BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017949
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 178/340 (52%), Gaps = 29/340 (8%)
Query: 27 VKGLSEMGLKSLPKQFHQPLEER------FSEKKILDQVSIPLIDMSKWESPE------V 74
V+ L++ G+ S+PK++ +P EE F E+K D +P ID+ ES +
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 75 AKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYG 134
+ + + +WG ++NHG+P +++ERVK+A FF+L EEK KY+ + + YG
Sbjct: 67 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 135 SSFVPHVERALEWKD-FLSLFYVSEEETSAFWPPVCKDEM---LEYMRSSEVLIRRLMHV 190
S + LEW+D F L Y E+ + WP D + EY + +L ++
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 191 LVKGLNV------KRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILL 244
L GL + K + + E +L ++ +NYYP CP PEL +GV H+D+S T +L
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLL----QMKINYYPKCPQPELALGVEAHTDVSALTFIL 242
Query: 245 QDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRIS 304
+ + GL + + +W+ + S+++++GD L+I+SNG+YKS+ H + N + RIS
Sbjct: 243 HNMVPGLQLFYEG--KWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
Query: 305 VPLFVN-PKPEAILCPFPEVLANGEKPLYKPVLCADYSRH 343
+F PK + +L P PE+++ + P A + H
Sbjct: 301 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH 340
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 178/340 (52%), Gaps = 29/340 (8%)
Query: 27 VKGLSEMGLKSLPKQFHQPLEER------FSEKKILDQVSIPLIDMSKWESPE------V 74
V+ L++ G+ S+PK++ +P EE F E+K D +P ID+ ES +
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 65
Query: 75 AKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYG 134
+ + + +WG ++NHG+P +++ERVK+A FF+L EEK KY+ + + YG
Sbjct: 66 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 125
Query: 135 SSFVPHVERALEWKD-FLSLFYVSEEETSAFWPPVCKDEM---LEYMRSSEVLIRRLMHV 190
S + LEW+D F L Y E+ + WP D + EY + +L ++
Sbjct: 126 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 185
Query: 191 LVKGLNV------KRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILL 244
L GL + K + + E +L ++ +NYYP CP PEL +GV H+D+S T +L
Sbjct: 186 LSVGLGLEPDRLEKEVGGLEELLL----QMKINYYPKCPQPELALGVEAHTDVSALTFIL 241
Query: 245 QDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRIS 304
+ + GL + + +W+ + S+++++GD L+I+SNG+YKS+ H + N + RIS
Sbjct: 242 HNMVPGLQLFYEG--KWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 299
Query: 305 VPLFVN-PKPEAILCPFPEVLANGEKPLYKPVLCADYSRH 343
+F PK + +L P PE+++ + P A + H
Sbjct: 300 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH 339
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 174/340 (51%), Gaps = 29/340 (8%)
Query: 27 VKGLSEMGLKSLPKQFHQPLEER------FSEKKILDQVSIPLIDMSKWESPE------V 74
V+ L++ G+ S+PK++ +P EE F E+K D +P ID+ ES +
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 75 AKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYG 134
+ + + +WG ++NHG+P ++ ERVK+A FF+L EEK KY+ + + YG
Sbjct: 67 IEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 135 SSFVPHVERALEWKD-FLSLFYVSEEETSAFWPPVCKDEM---LEYMRSSEVLIRRLMHV 190
S + LEW+D F L Y E+ + WP D + EY + +L ++
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 191 LVKGLNV------KRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILL 244
L GL + K + + E +L + +NYYP CP PEL +GV H+D+S T +L
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLL----QXKINYYPKCPQPELALGVEAHTDVSALTFIL 242
Query: 245 QDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRIS 304
+ + GL + + +W+ + S++ ++GD L+I+SNG+YKS+ H + N + RIS
Sbjct: 243 HNXVPGLQLFYEG--KWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
Query: 305 VPLFVN-PKPEAILCPFPEVLANGEKPLYKPVLCADYSRH 343
+F PK + +L P PE ++ + P A + H
Sbjct: 301 WAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEH 340
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 148/301 (49%), Gaps = 30/301 (9%)
Query: 60 SIPLIDMSKWESPEVAKS---ICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAE 116
+ P+I + K E A + I D ENWGFF++VNHG+P EV + V++ T + E
Sbjct: 3 NFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXE 62
Query: 117 EKRKYSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWP-PVCKDEMLE 175
++ K S + V+ + D+ S F++ S P +E E
Sbjct: 63 QRFKE----------LVASKALEGVQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYRE 112
Query: 176 ----YMRSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVN----LNYYPMCPNPEL 227
+ + E L L+ +L + L +++ + GS+ N ++ YP CP P+L
Sbjct: 113 VXRDFAKRLEKLAEELLDLLCENLGLEK--GYLKNAFYGSKGPNFGTKVSNYPPCPKPDL 170
Query: 228 TVGVGRHSDISTFTILLQDD-IGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGR 286
G+ H+D +L QDD + GL + KD +WI V P S+++N+GD L++++NG+
Sbjct: 171 IKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPXRHSIVVNLGDQLEVITNGK 228
Query: 287 YKSVEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVL---ANGEKPLYKPVLCADYSRH 343
YKSV H VIA R S+ F NP +A++ P P ++ A K +Y + DY +
Sbjct: 229 YKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKL 288
Query: 344 F 344
+
Sbjct: 289 Y 289
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 110/247 (44%), Gaps = 13/247 (5%)
Query: 75 AKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSK-ENSPINNVRY 133
A+ + + E +GF + ++ + ++ ++ FFALP E K++Y+ + + +
Sbjct: 23 AQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPF 82
Query: 134 G---SSFVPHVERALEW---KDFLSLFYVSEEETSAFWP---PVCKDEMLEYMRSSEVLI 184
G + H + W +D WP P K ++ S +
Sbjct: 83 GVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXG 142
Query: 185 RRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILL 244
+++ + L ++R D + + G+ + L +YP P V G H DI+T T+LL
Sbjct: 143 GKVLEAIATYLKLER-DFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLL 201
Query: 245 QDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRIS 304
+ GGL V +G +W+ + P G L+IN+GD L+ ++N S H V+ N R
Sbjct: 202 GAEEGGLEVLDRDG-QWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVV-NPPPERRG 259
Query: 305 VPLFVNP 311
VP + P
Sbjct: 260 VPRYSTP 266
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 118/268 (44%), Gaps = 33/268 (12%)
Query: 69 WESPEVAKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPI 128
+ + + AK ++ GF + NH + E++ER+ FF A+ + +++E
Sbjct: 9 YRAADSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRE---- 64
Query: 129 NNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFW---PPVCKDEMLEYMRSSEVLIR 185
+ + + + + KD ++V W P + +L Y + L
Sbjct: 65 THDGFFPASISETAKGHTVKDIKEYYHVYP------WGRIPDSLRANILAYYEKANTLAS 118
Query: 186 RLMHVLVKGLNVKRIDEIRE------PMLLGSRRVN----LNYYPMCPNPEL-TVGVGRH 234
L+ + + DEI+ P + + L+Y P + E + H
Sbjct: 119 ELL----EWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAH 174
Query: 235 SDISTFTILLQDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCV 294
DI+ T+L + GL V+ +G+ W+ V G++IIN+GD LQ S+G + S H V
Sbjct: 175 EDINLITVLPTANEPGLQVKAKDGS-WLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRV 233
Query: 295 I----ANGSQNRISVPLFVNPKPEAILC 318
I + +++RIS+PLF++P P +L
Sbjct: 234 INPEGTDKTKSRISLPLFLHPHPSVVLS 261
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 133/321 (41%), Gaps = 44/321 (13%)
Query: 56 LDQVSIPLIDMS------KWESPEVAKSICDTAENWGFFQIVNHGVPLEVLERVKEATHR 109
+ + ++P ID+S + VA+ I + + GFF VNHG+ ++ L + + H
Sbjct: 4 VSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH- 62
Query: 110 FFALPAEEK-----RKYSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEE----- 159
++ EEK R Y+KE+ + VR G ++A+E +L+ + +
Sbjct: 63 -MSITPEEKWDLAIRAYNKEHQ--DQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQA 119
Query: 160 ----ETSAFWP-----PVCKDEMLEYMRSSEVLIRRLM--HVLVKGLNVKRIDEIREPML 208
WP P +D +Y L L+ + L G +P
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 209 LGSRRVNLNYYPMCPNPELTVGVGR---------HSDISTFTILLQDDIGGLHVRKDNGT 259
+ V + Y + P PE + H D+S T+L Q ++ L V G
Sbjct: 180 TLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGY 239
Query: 260 EWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLFVNPKPEAILCP 319
+ I A +G L IN G + ++N YK+ H V ++ R S+P FVN ++++ P
Sbjct: 240 QDIE-ADDTGYL-INCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYDSVIDP 296
Query: 320 FPEVLANGEKPLYKPVLCADY 340
F NG K +P+ DY
Sbjct: 297 FDPREPNG-KSDREPLSYGDY 316
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 133/321 (41%), Gaps = 44/321 (13%)
Query: 56 LDQVSIPLIDMS------KWESPEVAKSICDTAENWGFFQIVNHGVPLEVLERVKEATHR 109
+ + ++P ID+S + VA+ I + + GFF VNHG+ ++ L + + H
Sbjct: 4 VSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH- 62
Query: 110 FFALPAEEK-----RKYSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEE----- 159
++ EEK R Y+KE+ + VR G ++A+E +L+ + +
Sbjct: 63 -MSITPEEKWDLAIRAYNKEHQ--DQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQA 119
Query: 160 ----ETSAFWP-----PVCKDEMLEYMRSSEVLIRRLM--HVLVKGLNVKRIDEIREPML 208
WP P +D +Y L L+ + L G +P
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 209 LGSRRVNLNYYPMCPNPELTVGVGR---------HSDISTFTILLQDDIGGLHVRKDNGT 259
+ V + Y + P PE + H D+S T+L Q ++ L V G
Sbjct: 180 TLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGY 239
Query: 260 EWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLFVNPKPEAILCP 319
+ I A +G L IN G + ++N YK+ H V ++ R S+P FVN ++++ P
Sbjct: 240 QDIE-ADDTGYL-INCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYDSVIDP 296
Query: 320 FPEVLANGEKPLYKPVLCADY 340
F NG K +P+ DY
Sbjct: 297 FDPREPNG-KSDREPLSYGDY 316
>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt
Length = 230
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 245 QDDIGGLHVRKDNGTEWIHVAPIS 268
Q D GG RKDN EWI V +S
Sbjct: 176 QGDSGGPMFRKDNADEWIQVGIVS 199
>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin
Length = 223
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 221 MCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTEWIHVAPIS 268
+ N E+ G + T Q D GG RKDN EWI V +S
Sbjct: 149 LVANEEICAGYPDTGGVDT----CQGDSGGPMFRKDNADEWIQVGIVS 192
>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin
Length = 222
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 245 QDDIGGLHVRKDNGTEWIHVAPIS 268
Q D GG RKDN EWI V +S
Sbjct: 168 QGDSGGPMFRKDNADEWIQVGIVS 191
>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin
At 1.7 Angstroms Resolution
Length = 223
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 221 MCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTEWIHVAPIS 268
+ N E+ G + T Q D GG RKDN EWI V +S
Sbjct: 149 LVANEEICAGYPDTGGVDT----CQGDSGGPMFRKDNADEWIQVGIVS 192
>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With
Benzamidine
Length = 223
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 244 LQDDIGGLHVRKDNGTEWIHVAPIS 268
Q D GG RKDN EWI V +S
Sbjct: 168 CQGDSGGPMFRKDNADEWIQVGIVS 192
>pdb|2XN0|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN0|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN1|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|C Chain C, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|D Chain D, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
Length = 732
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 31 SEMGLKSLPKQFHQPLEERFSEKKILDQVSIPLIDMSKWESP------EVAKSICDTAEN 84
S+ GL + + FH + ER K DQ+ L++ WE+ + K+I D A+
Sbjct: 304 SDQGLNKMSQAFHSLIHERIMRSKFKDQIRPVLVN--NWEATYFDFNEDKLKTIVDKAKK 361
Query: 85 WGFFQIV 91
G V
Sbjct: 362 LGLEMFV 368
>pdb|2XN2|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Galactose
Length = 732
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 31 SEMGLKSLPKQFHQPLEERFSEKKILDQVSIPLIDMSKWESP------EVAKSICDTAEN 84
S+ GL + + FH + ER K DQ+ L++ WE+ + K+I D A+
Sbjct: 304 SDQGLNKMSQAFHSLIHERIMRSKFKDQIRPVLVN--NWEATYFDFNEDKLKTIVDKAKK 361
Query: 85 WGFFQIV 91
G V
Sbjct: 362 LGLEMFV 368
>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
pdb|3BEU|B Chain B, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
Length = 224
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 245 QDDIGGLHVRKDNGTEWIHVAPIS 268
Q D GG RKDN EW+ V +S
Sbjct: 170 QGDSGGPMFRKDNADEWVQVGIVS 193
>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt
Length = 229
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 245 QDDIGGLHVRKDNGTEWIHVAPIS 268
Q D GG RKDN EW+ V +S
Sbjct: 175 QGDSGGPMFRKDNADEWVQVGIVS 198
>pdb|1ESJ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESQ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate
Length = 284
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 260 EWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLFVNP 311
E +A I+G+L++N+G + +SVE +IA S N VP+ ++P
Sbjct: 63 EVADMAKIAGALVLNIGTLSK-------ESVEAMIIAGKSANEHGVPVILDP 107
>pdb|1EKK|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKK|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKQ|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
pdb|1EKQ|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
Length = 272
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 260 EWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLFVNP 311
E +A I+G+L++N+G + +SVE +IA S N VP+ ++P
Sbjct: 51 EVADMAKIAGALVLNIGTLSK-------ESVEAMIIAGKSANEHGVPVILDP 95
>pdb|1C3Q|A Chain A, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|B Chain B, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|C Chain C, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
Length = 284
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 260 EWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLFVNP 311
E +A I+G+L++N+G + +SVE +IA S N VP+ ++P
Sbjct: 63 EVADMAKIAGALVLNIGTLSK-------ESVEAMIIAGKSANEHGVPVILDP 107
>pdb|3DLS|A Chain A, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|B Chain B, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|C Chain C, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|D Chain D, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|E Chain E, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|F Chain F, Crystal Structure Of Human Pas Kinase Bound To Adp
Length = 335
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 46 LEERFSEKKILDQVSIPLIDMSKWESPEVAKSICDTAENWGFFQIV--NHGVPLEVL 100
LE+ + E L +V++ + +S+ E + K + D EN GFFQ+V HG L++
Sbjct: 63 LEDCWIEDPKLGKVTLEIAILSRVEHANIIK-VLDIFENQGFFQLVMEKHGSGLDLF 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,438,942
Number of Sequences: 62578
Number of extensions: 480894
Number of successful extensions: 1160
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1124
Number of HSP's gapped (non-prelim): 26
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)