BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017950
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J1Z|P Chain P, Inward-facing Conformation Of The Zinc Transporter Yiip
Revealed By Cryo-electron Microscopy
pdb|3J1Z|Q Chain Q, Inward-facing Conformation Of The Zinc Transporter Yiip
Revealed By Cryo-electron Microscopy
Length = 306
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 116/281 (41%), Gaps = 9/281 (3%)
Query: 73 RVAIYASNAANLVLFLAKVYASAESRSLAVIASTXXXXXXXXXGFILWFTAYAMKKPNQY 132
++A AS A L L K+ A S S +++AS I + P +
Sbjct: 12 KLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADH 71
Query: 133 QYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVT 192
+ G + +P+ + ++ + +LF G L + E + + V
Sbjct: 72 DHRYGHGKAEPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVE----NATLGVVVSVVAI 127
Query: 193 VVKLALMMYCRR----FKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAIL 248
V+ LAL++ +R + +V A + + D+ N+ L +L+ +WW D + A+L
Sbjct: 128 VLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQYGWWWADGLFAVL 187
Query: 249 IALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYF 308
IA Y + ++ +L+ R + ++ LI + + +R G F
Sbjct: 188 IACYIGQQAFDLGYRSIQALLDRELDEDTRQRIK-LIAKEDPRVLGLHDLRTRQAGKTVF 246
Query: 309 VEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVD 349
++ + L +SL+EAH+I ++ +++ E +H D
Sbjct: 247 IQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQD 287
>pdb|2QFI|A Chain A, Structure Of The Zinc Transporter Yiip
pdb|2QFI|B Chain B, Structure Of The Zinc Transporter Yiip
Length = 300
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 22/200 (11%)
Query: 161 LFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMM--------YCRRFKNEIVRA 212
LF +G + P DP G+ V VT+V L + RR +++ VRA
Sbjct: 97 LFLTGIQHLISPTPMTDP-------GVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRA 149
Query: 213 YAQDHFFDVITNSIGLATALLAIKFYWW--IDPIGAILIALYTMGNWGNTVMENVWSLIG 270
+ DV+ N G L + +Y W D + A+ I +Y + + E V SL+
Sbjct: 150 DMLHYQSDVMMN--GAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLD 207
Query: 271 RTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGES 330
R P E ++ ++ + +R G F++ + + + L +AH + +
Sbjct: 208 RALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQ 266
Query: 331 LQEK-LEQLPEVERAFVHVD 349
+++ L + P + +H D
Sbjct: 267 VEQAILRRFPGSD-VIIHQD 285
>pdb|3H90|A Chain A, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|B Chain B, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|C Chain C, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|D Chain D, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
Length = 283
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 85/198 (42%), Gaps = 18/198 (9%)
Query: 161 LFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMY------CRRFKNEIVRAYA 214
LF +G + P DP +G++V++ + +++ RR +++ VRA
Sbjct: 90 LFLTGIQHLISPTPMTDPG-----VGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADM 144
Query: 215 QDHFFDVITNSIGLATALLAIKFYWW--IDPIGAILIALYTMGNWGNTVMENVWSLIGRT 272
+ DV+ N G L + +Y W D + A+ I +Y + + E V SL+ R
Sbjct: 145 LHYQSDVMMN--GAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRA 202
Query: 273 APAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQ 332
P E ++ ++ + +R G F++ + + + L +AH + + ++
Sbjct: 203 LPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVE 261
Query: 333 EK-LEQLPEVERAFVHVD 349
+ L + P + +H D
Sbjct: 262 QAILRRFPGSD-VIIHQD 278
>pdb|2ZZT|A Chain A, Crystal Structure Of The Cytosolic Domain Of The Cation
Diffusion Facilitator Family Protein
Length = 107
Score = 33.5 bits (75), Expect = 0.21, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 298 VRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESL-QEKLEQLPEVERAFVHVD 349
VR G +YF+E D+ + + S+ +AH + + +E L++ ++E +HV+
Sbjct: 31 VRIRRVGTKYFIEXDIEVDGKXSVKDAHELTVKIRKEXLKRRDDIEDVTIHVE 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,096,498
Number of Sequences: 62578
Number of extensions: 386997
Number of successful extensions: 815
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 11
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)