Query 017950
Match_columns 363
No_of_seqs 229 out of 1756
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:51:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1485 Mitochondrial Fe2+ tra 100.0 2.4E-62 5.1E-67 460.7 32.4 344 18-361 59-410 (412)
2 COG0053 MMT1 Predicted Co/Zn/C 100.0 1.1E-51 2.3E-56 388.2 39.0 283 69-357 8-296 (304)
3 PRK09509 fieF ferrous iron eff 100.0 9.9E-51 2.1E-55 383.3 39.9 275 71-352 8-288 (299)
4 PRK03557 zinc transporter ZitB 100.0 1.5E-49 3.3E-54 376.7 35.1 276 73-357 18-298 (312)
5 TIGR01297 CDF cation diffusion 100.0 8.8E-47 1.9E-51 351.6 32.2 260 86-351 2-268 (268)
6 COG1230 CzcD Co/Zn/Cd efflux s 100.0 1.2E-43 2.7E-48 326.3 32.2 272 71-352 19-295 (296)
7 PF01545 Cation_efflux: Cation 100.0 4.7E-44 1E-48 335.8 16.0 272 76-353 1-283 (284)
8 KOG1482 Zn2+ transporter [Inor 100.0 1.9E-30 4E-35 240.8 20.4 276 72-356 71-371 (379)
9 KOG1484 Putative Zn2+ transpor 100.0 7.5E-29 1.6E-33 226.9 25.5 269 73-352 34-348 (354)
10 KOG1483 Zn2+ transporter ZNT1 100.0 3.3E-29 7.1E-34 233.3 14.2 268 75-352 10-371 (404)
11 COG3965 Predicted Co/Zn/Cd cat 100.0 2.2E-26 4.7E-31 202.9 22.5 276 70-351 16-309 (314)
12 KOG2802 Membrane protein HUEL 99.9 3.7E-23 7.9E-28 190.4 13.1 207 70-319 203-435 (503)
13 COG0053 MMT1 Predicted Co/Zn/C 98.3 5.9E-06 1.3E-10 78.2 12.5 93 73-173 120-212 (304)
14 TIGR01297 CDF cation diffusion 98.2 1.4E-05 2.9E-10 74.4 11.1 92 74-173 98-189 (268)
15 PRK09509 fieF ferrous iron eff 98.2 2.3E-05 5E-10 74.2 12.5 93 74-174 119-211 (299)
16 PRK03557 zinc transporter ZitB 97.4 0.0012 2.6E-08 63.0 11.0 90 77-174 129-218 (312)
17 KOG1485 Mitochondrial Fe2+ tra 96.6 0.0073 1.6E-07 58.5 8.0 92 74-173 231-322 (412)
18 PF01545 Cation_efflux: Cation 95.2 0.035 7.5E-07 51.9 5.4 90 76-172 109-201 (284)
19 COG1230 CzcD Co/Zn/Cd efflux s 93.8 0.54 1.2E-05 44.2 9.9 92 75-175 130-221 (296)
20 PF03780 Asp23: Asp23 family; 89.7 4.6 9.9E-05 31.7 9.7 52 298-349 50-105 (108)
21 PF07444 Ycf66_N: Ycf66 protei 89.5 4.3 9.4E-05 30.7 8.6 44 218-261 35-81 (84)
22 COG4956 Integral membrane prot 86.8 20 0.00044 33.8 12.9 53 218-270 78-139 (356)
23 COG1183 PssA Phosphatidylserin 85.3 12 0.00027 34.0 10.8 86 182-269 36-121 (234)
24 PF00873 ACR_tran: AcrB/AcrD/A 85.2 69 0.0015 35.8 21.6 44 307-350 559-602 (1021)
25 TIGR02898 spore_YhcN_YlaJ spor 82.1 9.8 0.00021 32.4 8.3 69 278-352 56-125 (158)
26 PF14535 AMP-binding_C_2: AMP- 81.5 17 0.00036 28.0 8.9 73 279-353 7-81 (96)
27 KOG1484 Putative Zn2+ transpor 80.2 26 0.00057 33.4 11.1 87 184-270 37-131 (354)
28 PF09580 Spore_YhcN_YlaJ: Spor 77.5 9.5 0.0002 32.9 7.0 68 276-351 75-143 (177)
29 TIGR02945 SUF_assoc FeS assemb 73.2 40 0.00086 25.9 9.2 51 305-358 37-87 (99)
30 TIGR00473 pssA CDP-diacylglyce 72.4 58 0.0013 27.5 12.3 82 182-266 21-102 (151)
31 COG4858 Uncharacterized membra 67.9 85 0.0018 27.5 12.0 103 153-258 102-210 (226)
32 TIGR03406 FeS_long_SufT probab 66.5 31 0.00067 29.9 7.5 79 276-357 73-162 (174)
33 PF10934 DUF2634: Protein of u 66.0 33 0.00072 27.3 7.1 51 264-315 52-107 (112)
34 PF01883 DUF59: Domain of unkn 62.6 15 0.00033 26.3 4.3 46 298-346 26-72 (72)
35 PRK14856 nhaA pH-dependent sod 62.0 1.6E+02 0.0035 29.5 12.3 102 143-249 67-178 (438)
36 PF11712 Vma12: Endoplasmic re 60.7 97 0.0021 25.7 9.8 23 78-100 79-101 (142)
37 PF13710 ACT_5: ACT domain; PD 59.3 47 0.001 23.4 6.1 61 275-344 3-63 (63)
38 PRK00907 hypothetical protein; 57.0 81 0.0018 24.3 7.5 66 268-342 22-89 (92)
39 PRK10503 multidrug efflux syst 54.9 1.2E+02 0.0027 33.9 11.6 67 274-341 65-132 (1040)
40 COG2921 Uncharacterized conser 52.6 1E+02 0.0022 23.5 7.3 67 269-342 21-87 (90)
41 TIGR03221 muco_delta muconolac 52.6 1E+02 0.0023 23.6 7.4 22 307-328 2-23 (90)
42 COG0841 AcrB Cation/multidrug 49.8 1.4E+02 0.003 33.4 10.7 66 274-340 55-120 (1009)
43 cd04900 ACT_UUR-like_1 ACT dom 49.5 82 0.0018 22.5 6.3 60 274-336 11-70 (73)
44 PRK02047 hypothetical protein; 49.3 1.2E+02 0.0025 23.2 7.5 62 273-342 25-88 (91)
45 PF01037 AsnC_trans_reg: AsnC 48.4 93 0.002 21.8 6.5 60 277-349 11-71 (74)
46 TIGR00915 2A0602 The (Largely 48.4 1.5E+02 0.0033 33.2 11.0 65 274-339 54-119 (1044)
47 PRK04998 hypothetical protein; 46.4 1.3E+02 0.0028 22.8 7.1 60 273-342 24-85 (88)
48 PRK14646 hypothetical protein; 46.2 1.2E+02 0.0025 25.8 7.6 45 293-337 22-68 (155)
49 PRK09560 nhaA pH-dependent sod 45.9 2.7E+02 0.0058 27.4 10.8 85 143-230 58-142 (389)
50 COG2151 PaaD Predicted metal-s 45.7 1.5E+02 0.0033 23.6 7.6 76 275-356 11-97 (111)
51 COG2098 Uncharacterized protei 44.2 37 0.00079 26.9 3.8 34 320-353 35-68 (116)
52 PF06570 DUF1129: Protein of u 43.9 2.3E+02 0.0049 25.0 14.5 16 190-205 186-201 (206)
53 PF09685 Tic20: Tic20-like pro 43.7 1.5E+02 0.0032 22.8 8.0 24 113-136 81-104 (109)
54 PRK15127 multidrug efflux syst 43.3 1.8E+02 0.004 32.6 10.6 68 273-342 53-123 (1049)
55 PRK09577 multidrug efflux prot 43.1 2.1E+02 0.0045 32.1 11.0 65 273-339 53-118 (1032)
56 PRK10555 aminoglycoside/multid 42.6 2.1E+02 0.0045 32.2 10.9 68 273-342 53-123 (1037)
57 COG0581 PstA ABC-type phosphat 42.4 3E+02 0.0065 26.0 11.0 69 198-266 94-168 (292)
58 PRK14855 nhaA pH-dependent sod 41.6 3.7E+02 0.0081 26.8 11.3 83 143-229 62-144 (423)
59 PRK14634 hypothetical protein; 40.9 2E+02 0.0043 24.3 8.2 59 277-338 9-69 (155)
60 TIGR00489 aEF-1_beta translati 40.4 1.6E+02 0.0036 22.4 7.4 64 278-347 19-83 (88)
61 PRK14640 hypothetical protein; 39.9 2.3E+02 0.0049 23.9 8.5 46 293-338 21-66 (152)
62 COG1302 Uncharacterized protei 39.3 2.2E+02 0.0047 23.5 9.5 86 260-351 25-114 (131)
63 PRK00341 hypothetical protein; 39.2 1.7E+02 0.0038 22.3 7.1 64 269-342 23-88 (91)
64 PLN02601 beta-carotene hydroxy 38.2 2.3E+02 0.005 26.4 8.5 13 216-228 178-190 (303)
65 PRK14647 hypothetical protein; 38.1 2.5E+02 0.0054 23.8 8.7 46 293-338 23-68 (159)
66 TIGR00439 ftsX putative protei 36.2 3.8E+02 0.0082 25.4 10.9 70 270-344 73-161 (309)
67 PRK09579 multidrug efflux prot 35.8 2.7E+02 0.0058 31.2 10.4 66 273-340 55-121 (1017)
68 PRK14637 hypothetical protein; 35.8 2.5E+02 0.0054 23.6 8.0 70 277-349 10-79 (151)
69 PRK10614 multidrug efflux syst 35.6 2.7E+02 0.0058 31.2 10.4 65 273-339 55-120 (1025)
70 COG0779 Uncharacterized protei 35.4 2.8E+02 0.006 23.5 8.7 57 293-349 23-80 (153)
71 PRK11152 ilvM acetolactate syn 34.3 1.9E+02 0.0041 21.3 7.3 63 274-346 13-75 (76)
72 PRK14854 nhaA pH-dependent sod 34.2 4.6E+02 0.01 25.7 11.2 86 144-234 56-141 (383)
73 COG3978 Acetolactate synthase 34.0 1.7E+02 0.0037 21.9 5.7 65 272-346 11-75 (86)
74 PRK00435 ef1B elongation facto 33.9 2.1E+02 0.0046 21.8 6.8 64 278-347 19-83 (88)
75 KOG1482 Zn2+ transporter [Inor 33.7 1.4E+02 0.003 29.1 6.7 70 100-175 224-293 (379)
76 TIGR02159 PA_CoA_Oxy4 phenylac 33.5 2.3E+02 0.0049 23.8 7.3 45 304-352 24-68 (146)
77 PRK14632 hypothetical protein; 33.0 2.6E+02 0.0056 24.1 7.8 45 293-338 23-67 (172)
78 PF11654 DUF2665: Protein of u 32.7 41 0.0009 22.4 2.1 20 238-257 4-23 (47)
79 PF09877 DUF2104: Predicted me 32.6 72 0.0016 24.8 3.7 20 137-156 78-97 (99)
80 TIGR00773 NhaA Na+/H+ antiport 32.2 5E+02 0.011 25.5 10.5 103 143-249 51-163 (373)
81 COG3062 NapD Uncharacterized p 31.2 2.5E+02 0.0053 21.7 7.7 72 273-358 15-89 (94)
82 TIGR03341 YhgI_GntY IscR-regul 30.8 3.7E+02 0.008 23.6 8.9 80 275-356 104-188 (190)
83 PRK00106 hypothetical protein; 30.1 1.2E+02 0.0027 31.1 6.1 63 278-348 460-526 (535)
84 PRK00092 ribosome maturation p 30.1 3.3E+02 0.0072 22.8 8.5 59 277-338 9-67 (154)
85 PF11381 DUF3185: Protein of u 29.7 2E+02 0.0043 20.2 6.2 46 145-194 6-54 (59)
86 TIGR00334 5S_RNA_mat_M5 ribonu 29.6 1.7E+02 0.0037 25.3 6.0 55 270-352 30-85 (174)
87 cd04888 ACT_PheB-BS C-terminal 29.5 2E+02 0.0044 20.1 6.4 63 275-346 11-74 (76)
88 PRK14639 hypothetical protein; 29.2 2.2E+02 0.0047 23.7 6.4 46 293-338 12-57 (140)
89 cd00491 4Oxalocrotonate_Tautom 28.8 1.8E+02 0.0039 19.3 5.5 43 311-353 3-47 (58)
90 PRK09561 nhaA pH-dependent sod 28.6 2.6E+02 0.0057 27.5 7.7 103 143-249 58-170 (388)
91 TIGR03319 YmdA_YtgF conserved 28.1 1.9E+02 0.0041 29.6 7.1 64 278-348 439-505 (514)
92 PRK14635 hypothetical protein; 27.1 3.9E+02 0.0085 22.7 9.6 45 293-337 20-68 (162)
93 PRK02220 4-oxalocrotonate taut 26.9 1.8E+02 0.0038 19.7 4.8 42 311-352 4-47 (61)
94 PRK14638 hypothetical protein; 26.7 3.8E+02 0.0083 22.5 8.5 45 293-337 23-68 (150)
95 COG3518 Predicted component of 26.6 76 0.0017 27.0 3.3 34 321-354 83-117 (157)
96 PRK14633 hypothetical protein; 26.3 3.9E+02 0.0085 22.4 8.5 59 276-338 5-63 (150)
97 PRK10503 multidrug efflux syst 26.2 1.6E+02 0.0034 33.1 6.6 43 307-349 568-610 (1040)
98 cd04871 ACT_PSP_2 ACT domains 26.2 1.9E+02 0.0042 21.4 5.2 66 268-337 4-75 (84)
99 COG4035 Predicted membrane pro 26.1 59 0.0013 24.9 2.2 43 107-156 61-104 (108)
100 PRK12704 phosphodiesterase; Pr 25.9 1.6E+02 0.0036 30.1 6.2 63 278-348 445-511 (520)
101 PRK09577 multidrug efflux prot 25.1 1.6E+02 0.0036 32.9 6.5 40 308-347 568-607 (1032)
102 COG4331 Predicted membrane pro 24.5 3.9E+02 0.0084 22.5 6.8 51 74-127 107-157 (167)
103 PHA02692 hypothetical protein; 24.5 2.8E+02 0.0061 20.1 6.2 61 143-203 3-68 (70)
104 cd04928 ACT_TyrKc Uncharacteri 24.4 2.7E+02 0.006 20.0 6.9 57 274-335 11-67 (68)
105 PF01390 SEA: SEA domain; Int 24.3 2.2E+02 0.0047 21.6 5.4 44 293-337 51-95 (107)
106 PF12108 SF3a60_bindingd: Spli 23.8 61 0.0013 19.1 1.6 21 13-36 5-25 (28)
107 TIGR00914 2A0601 heavy metal e 23.6 4.4E+02 0.0096 29.6 9.5 65 273-339 57-122 (1051)
108 COG1183 PssA Phosphatidylserin 23.6 5.6E+02 0.012 23.3 14.8 68 85-164 47-116 (234)
109 cd04870 ACT_PSP_1 CT domains f 23.5 2.8E+02 0.0061 19.7 7.2 58 274-337 9-66 (75)
110 PRK11589 gcvR glycine cleavage 23.3 4.6E+02 0.01 23.0 7.7 71 274-354 105-181 (190)
111 PRK01964 4-oxalocrotonate taut 23.1 2.1E+02 0.0045 19.8 4.6 43 311-353 4-48 (64)
112 PF13273 DUF4064: Protein of u 22.9 3.5E+02 0.0075 20.6 10.2 29 70-98 3-31 (100)
113 PHA03054 IMV membrane protein; 22.8 3.1E+02 0.0066 20.0 6.8 61 143-203 3-70 (72)
114 TIGR00013 taut 4-oxalocrotonat 22.8 2.6E+02 0.0055 19.0 5.4 43 309-352 3-47 (63)
115 COG3696 Putative silver efflux 22.7 2E+02 0.0042 31.7 6.1 100 239-340 13-123 (1027)
116 cd02411 archeal_30S_S3_KH K ho 22.5 3.1E+02 0.0067 20.3 5.7 56 293-349 26-81 (85)
117 MTH00140 COX2 cytochrome c oxi 22.5 4.2E+02 0.0092 23.8 7.6 28 132-159 52-79 (228)
118 PF05977 MFS_3: Transmembrane 22.4 8.5E+02 0.018 24.9 18.6 24 307-331 425-448 (524)
119 PF13291 ACT_4: ACT domain; PD 22.4 3E+02 0.0065 19.7 7.9 60 275-344 17-78 (80)
120 PF02790 COX2_TM: Cytochrome C 22.3 3.1E+02 0.0067 19.9 7.5 33 129-161 50-82 (84)
121 PF02426 MIase: Muconolactone 22.0 1.9E+02 0.0041 22.2 4.4 27 307-333 3-29 (91)
122 TIGR00907 2A0304 amino acid pe 21.9 8E+02 0.017 24.4 12.1 19 178-196 450-468 (482)
123 TIGR02610 PHA_gran_rgn putativ 21.9 1.9E+02 0.0041 22.1 4.4 32 310-341 3-34 (91)
124 PRK11179 DNA-binding transcrip 21.8 3.7E+02 0.008 22.3 6.7 64 275-351 80-144 (153)
125 PF04456 DUF503: Protein of un 21.7 3.3E+02 0.0072 20.7 5.8 42 308-351 4-45 (90)
126 PRK15082 glutathione ABC trans 21.7 6.7E+02 0.015 23.5 10.5 14 128-141 74-87 (301)
127 PF00873 ACR_tran: AcrB/AcrD/A 21.7 3.6E+02 0.0077 30.2 8.3 57 274-335 54-110 (1021)
128 PF12327 FtsZ_C: FtsZ family, 21.6 1.2E+02 0.0026 23.2 3.4 30 308-337 38-67 (95)
129 PRK06937 type III secretion sy 21.2 5.6E+02 0.012 22.4 8.7 38 311-352 133-170 (204)
130 PF13965 SID-1_RNA_chan: dsRNA 21.1 9.5E+02 0.021 25.0 12.2 56 154-212 317-372 (570)
131 PF05105 Phage_holin_4: Holin 20.9 4.3E+02 0.0092 20.9 13.3 41 242-285 74-114 (118)
132 PRK11023 outer membrane lipopr 20.8 2E+02 0.0042 25.2 4.9 71 266-351 79-152 (191)
133 PRK15034 nitrate/nitrite trans 20.8 8.7E+02 0.019 24.5 10.1 43 60-102 16-58 (462)
No 1
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-62 Score=460.69 Aligned_cols=344 Identities=44% Similarity=0.697 Sum_probs=310.5
Q ss_pred hHHHHhhhhhchhHHHHHHHHHHHHhhhccchhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017950 18 GYYIKTLRRHRKIAGYYKRQEKLLKGYNEVDTFTELGILPGSLTQEEMKQLAKNERVAIYASNAANLVLFLAKVYASAES 97 (363)
Q Consensus 18 ~~~~~~~~~~~~~~~~y~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sl~~n~~l~v~k~~~~~~s 97 (363)
...++...+.++..+||..|.++.+.+.+..+..+++......++++.+..+..++++.|+++++|++++++|+++++.+
T Consensus 59 ~~~~~~~~~e~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~l~~Nigl~vaK~~as~~s 138 (412)
T KOG1485|consen 59 HKSLRSPEKEDNVSEFYSSQKSLLQKFVEHSHTHEHGFVSEALELEKLQILKNAERRAAWIGLAANIGLAVAKVVASYLS 138 (412)
T ss_pred ccccccchhhhccchHHHHHHHHhcccccccccccCCCCccccchhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555566677999999999999988888877766555444554444455678999999999999999999999999
Q ss_pred chHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--
Q 017950 98 RSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPE-- 175 (363)
Q Consensus 98 ~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~~~~~~~~i~~esi~~l~~~~~~~-- 175 (363)
||+|++||++||+.|+++++++|++.+..+|+|+++||||++|+|+++.+.++++|..+|+++++++++++..|....
T Consensus 139 gS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S~iMa~agv~ii~sSl~~i~~~~~~~~~ 218 (412)
T KOG1485|consen 139 GSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVSVIMAMAGVQIIWSSLRLIVGPHAIGHH 218 (412)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhcccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998722111
Q ss_pred CCCc-----chHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 017950 176 RDPE-----KEKWMIGIMVSVTVVKLALMMYCRRFKN-EIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAILI 249 (363)
Q Consensus 176 ~~~~-----~~~~~~~i~~~~~~v~~~l~~~~~~~~s-~~l~a~~~~~~~D~~~~~~~v~~~~~~~~~~~~~D~i~aiii 249 (363)
.++. ...|++++++....+++.++++|++.++ ..++|+|+|||+|+++|+++++++.++.+++||+||+||+++
T Consensus 219 ~~~~q~~~~~a~~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~~~~~lDP~gailV 298 (412)
T KOG1485|consen 219 HNPSQLIFINALWLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAYYYNYWLDPIGAILV 298 (412)
T ss_pred cCchhhcccchhhhheehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhcccchhhhhh
Confidence 1111 1227889999999999999999988765 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHH
Q 017950 250 ALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGE 329 (363)
Q Consensus 250 ~~~i~~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~ 329 (363)
+.++++.|.++..+++..|+|+++|||.++++.+.+.++.+.++.++.+++|+.|..++|++|+++|++++++++|++.+
T Consensus 299 S~~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~~idtv~~y~~g~~~~Vev~ivl~~~~~l~~ah~i~E 378 (412)
T KOG1485|consen 299 STYIIYTGGRTGLENIKELVGRSAPPEYLEIITYLILQHGKLIKHIDTVRAYTFGSHYFVEVHIVLDEDLSLSVAHDIGE 378 (412)
T ss_pred heehhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCccccceeeeeecccceEEEEEeeecCCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCccEEEEEEeeCCCCCCCCCCC
Q 017950 330 SLQEKLEQLPEVERAFVHVDFNATHQLEHKPK 361 (363)
Q Consensus 330 ~l~~~l~~~~~v~~v~Vhid~~~~~~~~h~~~ 361 (363)
.+|++||.+|+|+|+|||+|++..|+|+|+.+
T Consensus 379 ~lq~~ie~l~ever~fvh~d~e~~hr~~~~~~ 410 (412)
T KOG1485|consen 379 TLQKKIELLPEVERAFVHIDYEFLHRPHHEHL 410 (412)
T ss_pred HHHHHHhhcchheeeeeecCccccCCchHhhc
Confidence 99999999999999999999999999999864
No 2
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-51 Score=388.16 Aligned_cols=283 Identities=26% Similarity=0.408 Sum_probs=263.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHH
Q 017950 69 AKNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVV 148 (363)
Q Consensus 69 ~~~~~~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li 148 (363)
.+..+++.+++++.|++++++|+++|+++||.||+||++||+.|++++++.+++.+.++||||.+|||||+|+|++++++
T Consensus 8 ~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~sl~ 87 (304)
T COG0053 8 LKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLASLI 87 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHhHHHhhHHHHHH
Q 017950 149 FASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRR----FKNEIVRAYAQDHFFDVITN 224 (363)
Q Consensus 149 ~~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~----~~s~~l~a~~~~~~~D~~~~ 224 (363)
.+++++++|+.++++++.+++++.+++ +..+++++++++++++.++++|.++ .+|+.+.|++.|+++|++++
T Consensus 88 ~~~~i~~~g~~i~~~a~~~~~~~~~~~----~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts 163 (304)
T COG0053 88 VSILIFAAGFEILLEAIKRLISPQPVE----PPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTS 163 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999966543 3577999999999999999999854 68999999999999999995
Q ss_pred HHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCccccceeEEEEe
Q 017950 225 SIGLATALLAIKF-YWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNF 303 (363)
Q Consensus 225 ~~~v~~~~~~~~~-~~~~D~i~aiii~~~i~~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~ 303 (363)
+++++++++.++ +||+||++|++|+++|++.+++++++++..|+|+++|++..+++++++. ..|+|.++|++|+|+.
T Consensus 164 -~~~lvgl~~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i~-~~~~V~~v~~lr~R~~ 241 (304)
T COG0053 164 -LAVLVGLLGSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIIL-SVPGVKGVHDLRTRKS 241 (304)
T ss_pred -HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHh-cCCcceeeecceeeee
Confidence 777777776665 5899999999999999999999999999999999999999999999997 5899999999999999
Q ss_pred cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CCCccEEEEEEeeCCCCCCC
Q 017950 304 GCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQ-LPEVERAFVHVDFNATHQLE 357 (363)
Q Consensus 304 G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~-~~~v~~v~Vhid~~~~~~~~ 357 (363)
|+.+++++|+++|++|++.|+|+|++++++++++ .|++.+++||+||......+
T Consensus 242 G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~~~ 296 (304)
T COG0053 242 GSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKEEE 296 (304)
T ss_pred CCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCcccccc
Confidence 9999999999999999999999999999999986 56699999999998765443
No 3
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=9.9e-51 Score=383.34 Aligned_cols=275 Identities=19% Similarity=0.233 Sum_probs=251.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHH
Q 017950 71 NERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFA 150 (363)
Q Consensus 71 ~~~~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~ 150 (363)
..+|+.++++++|++++++|+++|+.+||++|+||++||+.|++++++++++.+.++||++.+|||||+|+|++++++.|
T Consensus 8 ~~~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~ 87 (299)
T PRK09509 8 LVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQS 87 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH----HhCCHHHHHhHHHhhHHHHHHHH
Q 017950 151 SIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCR----RFKNEIVRAYAQDHFFDVITNSI 226 (363)
Q Consensus 151 ~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~----~~~s~~l~a~~~~~~~D~~~~~~ 226 (363)
+++++.++++++||++++++|++.+ ...++++++++++++|.+++++++ +.+|+.+++++.|+++|+++| +
T Consensus 88 ~~l~~~~~~~~~esi~~l~~~~~~~----~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s-~ 162 (299)
T PRK09509 88 MFISGSALFLFLTGIQHLISPTPMN----DPGVGIIVTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMN-G 162 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCC----cchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-H
Confidence 9999999999999999999876542 234567788888899998887775 457899999999999999996 5
Q ss_pred HHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCccccceeEEEEecC
Q 017950 227 GLATALLAIKF-YWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGC 305 (363)
Q Consensus 227 ~v~~~~~~~~~-~~~~D~i~aiii~~~i~~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~ 305 (363)
++++++++.++ ++|+||++++++++++++.++++++++...|+|+++|++..++|++.+. ..|+|.++|++|+|+.|+
T Consensus 163 ~vl~~~~~~~~g~~~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~i~-~~~~v~~v~~l~~~~~G~ 241 (299)
T PRK09509 163 AILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVT-SWPGVSGAHDLRTRQSGP 241 (299)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-hCCCCcCceeeeeEeeCC
Confidence 66666666555 6799999999999999999999999999999999999999999999996 479999999999999999
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CCCccEEEEEEeeCC
Q 017950 306 QYFVEADVVLPAEMSLSEAHNIGESLQEKLEQ-LPEVERAFVHVDFNA 352 (363)
Q Consensus 306 ~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~-~~~v~~v~Vhid~~~ 352 (363)
++++++||++|++++++|+|++++++|++|++ +|++ +++||+||+.
T Consensus 242 ~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~-~v~ihveP~~ 288 (299)
T PRK09509 242 TRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPGS-DVIIHQDPCS 288 (299)
T ss_pred eEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCC-EEEEEeCCCC
Confidence 99999999999999999999999999999975 6655 6999999975
No 4
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=1.5e-49 Score=376.68 Aligned_cols=276 Identities=18% Similarity=0.205 Sum_probs=245.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHH
Q 017950 73 RVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASI 152 (363)
Q Consensus 73 ~~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~ 152 (363)
+|.+++++++|++++++|+++|+++||.+|+||++||+.|++++++++++.+.++||+|.+|||||+|+|++++++.|++
T Consensus 18 ~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~~ 97 (312)
T PRK03557 18 ARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIA 97 (312)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHhHHHhhHHHHHHHHHHH
Q 017950 153 MATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRR---FKNEIVRAYAQDHFFDVITNSIGLA 229 (363)
Q Consensus 153 ~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~---~~s~~l~a~~~~~~~D~~~~~~~v~ 229 (363)
|+++++++++||++++++|.+.+ ..+++++++.++++|.+++++.++ .+|..++++++|+++|+++| ++++
T Consensus 98 l~~~~~~i~~eai~~l~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s-~~vl 171 (312)
T PRK03557 98 LVVITILIVWEAIERFRTPRPVA-----GGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHVLGDLLGS-VGAI 171 (312)
T ss_pred HHHHHHHHHHHHHHHHcCCcccc-----chHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999765432 355677778888999988877654 35788999999999999996 5555
Q ss_pred HHHHHHHh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCccccceeEEEEecCeE
Q 017950 230 TALLAIKF--YWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQY 307 (363)
Q Consensus 230 ~~~~~~~~--~~~~D~i~aiii~~~i~~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~ 307 (363)
++.++..+ ++|+||++++++++++++.+++++++++..|+|.++|++..+++++.+.+..|+|+++|++|+|+.|+++
T Consensus 172 v~~~~~~~~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~~~~~~i~~~i~~~~~gV~~vh~l~~~~~G~~~ 251 (312)
T PRK03557 172 IAALIIIWTGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRLCREIPEVRNVHHVHVWMVGEKP 251 (312)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHhcCCCceeEEEEEEEEeCCeE
Confidence 55444333 5789999999999999999999999999999998887777889988775568999999999999999999
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEeeCCCCCCC
Q 017950 308 FVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNATHQLE 357 (363)
Q Consensus 308 ~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~~~~~~~ 357 (363)
++++|+++++++ ++|++++++|++|++.+++.+++||+||+.+++++
T Consensus 252 ~v~~hv~v~~~~---~~~~i~~~i~~~l~~~~~i~~vtIh~e~~~~~~~~ 298 (312)
T PRK03557 252 VMTLHVQVIPPH---DHDALLDRIQDYLMHHYQIEHATIQMEYQPCHGPD 298 (312)
T ss_pred EEEEEEEECCCC---CHHHHHHHHHHHHHHhCCCCEEEEEeccCcCCCcc
Confidence 999999999886 67999999999998777899999999999776653
No 5
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=8.8e-47 Score=351.59 Aligned_cols=260 Identities=23% Similarity=0.378 Sum_probs=238.6
Q ss_pred HHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 017950 86 LFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESG 165 (363)
Q Consensus 86 l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~~~~~~~~i~~esi 165 (363)
++++|+++|+.+||.+|+||++||+.|++++++++++.+.++|||+.+|||||+|+|++++++.|+++++.++.++++++
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si 81 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAI 81 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHhHHHhhHHHHHHHHHHHHHHHHHHh-hhh
Q 017950 166 RELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRR----FKNEIVRAYAQDHFFDVITNSIGLATALLAIKF-YWW 240 (363)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~----~~s~~l~a~~~~~~~D~~~~~~~v~~~~~~~~~-~~~ 240 (363)
+++++|++++ +..+++.+++.++++|.++++++++ .+|+.+++++.|+++|++++ ++++++..+..+ ++|
T Consensus 82 ~~l~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s-~~vli~~~~~~~~~~~ 156 (268)
T TIGR01297 82 ERLINPEPEI----DGGTMLIVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSS-VGVLIGALLIYFGWHW 156 (268)
T ss_pred HHHhCCCCcc----cchhHHHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999876432 2466778888999999999998876 46899999999999999996 666666555555 679
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCccccceeEEEEecC-eEEEEEEEEeCCCC
Q 017950 241 IDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGC-QYFVEADVVLPAEM 319 (363)
Q Consensus 241 ~D~i~aiii~~~i~~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~-~~~v~v~I~~~~~~ 319 (363)
+||++++++++++++.++++++++...|+|.+++++..+++++.+. +.|+|.++|++|+|+.|+ ++.+++||++|+++
T Consensus 157 ~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~~~~~i~~~i~-~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~ 235 (268)
T TIGR01297 157 ADPIAALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAIL-SIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDL 235 (268)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHh-cCCCcccceEeEEEEcCCCCEEEEEEEEECCCC
Confidence 9999999999999999999999999999999988899999999996 689999999999999999 79999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-cCCCccEEEEEEeeC
Q 017950 320 SLSEAHNIGESLQEKLE-QLPEVERAFVHVDFN 351 (363)
Q Consensus 320 ~l~~~h~i~~~l~~~l~-~~~~v~~v~Vhid~~ 351 (363)
+++|+|++++++|++++ +.|++++++||+||+
T Consensus 236 ~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep~ 268 (268)
T TIGR01297 236 DLKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268 (268)
T ss_pred ChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 99999999999999996 579999999999994
No 6
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-43 Score=326.28 Aligned_cols=272 Identities=17% Similarity=0.248 Sum_probs=244.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHH
Q 017950 71 NERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFA 150 (363)
Q Consensus 71 ~~~~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~ 150 (363)
+.+|.+++++.+|++++++|+++|+.|||+||+||++|++.|+++.++.+++.+.++|+++.+|||||.|+|.+++++++
T Consensus 19 ~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~na 98 (296)
T COG1230 19 RNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNA 98 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHH
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHh--CCHHHHHhHHHhhHHHHHHHHHH
Q 017950 151 SIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRRF--KNEIVRAYAQDHFFDVITNSIGL 228 (363)
Q Consensus 151 ~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~~--~s~~l~a~~~~~~~D~~~~~~~v 228 (363)
++++..++++++|+++||++|++.+ ...|++++++++++|+++.+..++. ++.++++...|.++|.+.| +|+
T Consensus 99 v~Li~~s~~I~~EAi~R~~~P~~i~-----~~~ml~va~~GL~vN~~~a~ll~~~~~~~lN~r~a~LHvl~D~Lgs-v~v 172 (296)
T COG1230 99 LLLIVVSLLILWEAIQRLLAPPPIH-----YSGMLVVAIIGLVVNLVSALLLHKGHEENLNMRGAYLHVLGDALGS-VGV 172 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCC-----ccchHHHHHHHHHHHHHHHHHhhCCCcccchHHHHHHHHHHHHHHH-HHH
Confidence 9999999999999999999988653 3678999999999999999998775 4688999999999999996 666
Q ss_pred HHHHHHHHh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCccccceeEEEEecCe
Q 017950 229 ATALLAIKF--YWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQ 306 (363)
Q Consensus 229 ~~~~~~~~~--~~~~D~i~aiii~~~i~~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~ 306 (363)
+++.+..++ |.|+||+.+++++++++..++++++++.+.|++..|+....+++++.+. ..|+|.++|++|+|+.+++
T Consensus 173 Iia~i~i~~~~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~-~~~~v~~vhdlHvWsi~~~ 251 (296)
T COG1230 173 IIAAIVIRFTGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALL-RIPGVASVHDLHVWSITGG 251 (296)
T ss_pred HHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHh-cCCCccceeecccCCCCCC
Confidence 666666655 4699999999999999999999999999999998776666889998886 6899999999999999777
Q ss_pred -EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEeeCC
Q 017950 307 -YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNA 352 (363)
Q Consensus 307 -~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~~ 352 (363)
...++|+++++..+ .+++.+++++++.+.++++++|||+|+..
T Consensus 252 ~~~~t~Hv~v~~~~~---~~~~~~~~~~~l~~~~~I~hvTiQ~e~~~ 295 (296)
T COG1230 252 EHALTLHVVVDEVAD---ADAALDQIVRRLLEKYGIEHVTIQLETEG 295 (296)
T ss_pred ceeEEEEEEecCccc---hHHHHHHHHHHHhhhcCcceEEEEecCCC
Confidence 89999999994432 23388999999988889999999999864
No 7
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=100.00 E-value=4.7e-44 Score=335.84 Aligned_cols=272 Identities=26% Similarity=0.470 Sum_probs=237.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHHHHH
Q 017950 76 IYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMAT 155 (363)
Q Consensus 76 l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~~~~ 155 (363)
+++++++|++++++|+++|+++||.++++|++|+++|+++.++.+++.+.++||++.+||||++|+|++++++.++++++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH----hC--CHHHHHhHHHhhHHHHHHHHHHH
Q 017950 156 LGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRR----FK--NEIVRAYAQDHFFDVITNSIGLA 229 (363)
Q Consensus 156 ~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~----~~--s~~l~a~~~~~~~D~~~~~~~v~ 229 (363)
.++.++++++++++++.+++ ...+++.++++++++|..++++.++ .+ |+.+++.+.++++|.+.+ ++++
T Consensus 81 ~~~~~~~~si~~~~~~~~~~----~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s-~~v~ 155 (284)
T PF01545_consen 81 LGLFLIVESIQRLISPHEPS----PPGIVLIVALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSS-LAVL 155 (284)
T ss_dssp HHHHHHHHHTTTSSSSSSSS----TTTS-THHHHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-S-STS-
T ss_pred hHHHHHHHHhhcccccccch----hhhhhhhhhhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHH-HHHH
Confidence 99999999999999986543 2344555588889999999888876 44 899999999999999996 6666
Q ss_pred HHHHHHHh--h-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCccccceeEEEEecC-
Q 017950 230 TALLAIKF--Y-WWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGC- 305 (363)
Q Consensus 230 ~~~~~~~~--~-~~~D~i~aiii~~~i~~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~- 305 (363)
++.++..+ + ||+||++++++++++++.+++.++++...|+|++++++..+++++.+++ .|++.+++++|+|+.|+
T Consensus 156 i~~~~~~~~~~~~~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~-~~~v~~v~~~~~~~~g~~ 234 (284)
T PF01545_consen 156 ISLLLAYLGPWFWYADPVASLLIALFILYSGYPLIKESIRILLDASPDPELVEKIRRIIES-VPGVIEVHDLRVWQVGRN 234 (284)
T ss_dssp SSSTSSSTT-STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHH-TSS-SEEEEEEEEEETT-
T ss_pred HHHHHHHHHhcccccchhhhhHHHHHHhhhhhhchhhhhcccccccccccchhHHHHhhcc-CCceEeccceEEEEecCC
Confidence 66555554 2 3599999999999999999999999999999999888989999999965 89999999999999999
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CCCccEEEEEEeeCCC
Q 017950 306 QYFVEADVVLPAEMSLSEAHNIGESLQEKLEQ-LPEVERAFVHVDFNAT 353 (363)
Q Consensus 306 ~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~-~~~v~~v~Vhid~~~~ 353 (363)
++.+++++.+|++++++|+|++++++++.+++ +|++.+++||+||+.+
T Consensus 235 ~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~~~ 283 (284)
T PF01545_consen 235 KYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPDEE 283 (284)
T ss_dssp EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEECGG
T ss_pred cEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence 79999999999999999999999999999974 8999999999999864
No 8
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.9e-30 Score=240.80 Aligned_cols=276 Identities=16% Similarity=0.197 Sum_probs=247.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHH
Q 017950 72 ERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFAS 151 (363)
Q Consensus 72 ~~~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~ 151 (363)
.+|.++.+.++.+.+++.|++.|+.+||+|+++|+.|.+.|..+-.+++++.+.+++|++.+..||+.|.|.++++++-.
T Consensus 71 ~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~ 150 (379)
T KOG1482|consen 71 AERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVL 150 (379)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHh------C---------------CHHH
Q 017950 152 IMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRRF------K---------------NEIV 210 (363)
Q Consensus 152 ~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~~------~---------------s~~l 210 (363)
.+..+...+++++++|+++++. ++ ....|+++...++++|.++....... + +.++
T Consensus 151 ~IW~~tgvLV~~Ai~Rl~s~~~-ev---~g~~m~i~a~~gv~vNiim~~vL~~~~h~h~H~~~~s~g~~h~~~~~~n~nv 226 (379)
T KOG1482|consen 151 LIWVVTGVLVYEAIQRLLSGDY-EV---NGGIMLITAAVGVAVNIIMGFVLHQSGHGHSHGGSHSHGHSHDHGEELNLNV 226 (379)
T ss_pred HHHHhhhhhHHHHHhhhhcCce-ee---cceEEEEEeehhhhhhhhhhhhhcccCCCCCCCCCCCcCcccccccccchHH
Confidence 9999999999999999999884 33 34567778888888888876665321 1 2789
Q ss_pred HHhHHHhhHHHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 017950 211 RAYAQDHFFDVITNSIGLATALLAIKFY---WWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWN 287 (363)
Q Consensus 211 ~a~~~~~~~D~~~~~~~v~~~~~~~~~~---~~~D~i~aiii~~~i~~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~ 287 (363)
+|...|.+.|.+. ++|++.+....++. .+.||+..++.+.+++.+-.+++|+.+..|++.+|..-....+++.+.
T Consensus 227 raAyiHVlGDliQ-SvGV~iaa~Ii~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~l~- 304 (379)
T KOG1482|consen 227 RAAFVHVLGDLIQ-SVGVLIAALIIYFKPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKGLL- 304 (379)
T ss_pred HHHHHHHHHHHHH-HHHHHhhheeEEecccceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHh-
Confidence 9999999999998 59999998888884 489999999999999999999999999999997765555788888886
Q ss_pred cCCCccccceeEEEEecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEeeCCCCCC
Q 017950 288 HHEEIKYIETVRAYNFGCQ-YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNATHQL 356 (363)
Q Consensus 288 ~~~~V~~v~~v~~~~~G~~-~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~~~~~~ 356 (363)
..++|+.||++|+|.++-+ ..+.+||..+++. +++++.+++.+.|++.+++.++|+++||.....+
T Consensus 305 ~iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~a---d~~~vL~~~~~~i~~~~~~~~vTiQie~~~~~~~ 371 (379)
T KOG1482|consen 305 SIEGVKAVHDLHIWSITVGKVALSVHLAIDSEA---DAEEVLDEARSLIKRRYGISHVTIQIEPYTEEMD 371 (379)
T ss_pred hhcceeEEEEEEEEEEecCceEEEEEEeecCCC---CHHHHHHHHHHHHHhhcceEEEEEEecCCccchh
Confidence 4899999999999999888 8999999999876 7888999999999988899999999999987654
No 9
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.5e-29 Score=226.86 Aligned_cols=269 Identities=17% Similarity=0.220 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHH
Q 017950 73 RVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASI 152 (363)
Q Consensus 73 ~~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~ 152 (363)
+|-+...+.+|+.++.++++.+..|+|+++++|+.|++.|..+..+.+++..++++|++.+||||+.|+|.+++++.+++
T Consensus 34 sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vf 113 (354)
T KOG1484|consen 34 SRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVF 113 (354)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHH
Confidence 45577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH-----hC---------------------
Q 017950 153 MATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRR-----FK--------------------- 206 (363)
Q Consensus 153 ~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~-----~~--------------------- 206 (363)
+.+.++.++.|+++|+++|+... ..-..++..++.++|++-.+..+. .+
T Consensus 114 lvl~a~fi~~Es~eRl~~ppei~-----t~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~~~~ 188 (354)
T KOG1484|consen 114 LVLIAFFIFSESVERLFDPPEIH-----TNRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGHLALLFHSLLGV 188 (354)
T ss_pred HHHHHHHHhHHHHHHhcCchhcC-----CceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccchhccccccccc
Confidence 99999999999999999986432 222345566677777654333321 00
Q ss_pred ---------------CHHHHHhHHHhhHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017950 207 ---------------NEIVRAYAQDHFFDVITNSIGLATALLAIKF--YWWIDPIGAILIALYTMGNWGNTVMENVWSLI 269 (363)
Q Consensus 207 ---------------s~~l~a~~~~~~~D~~~~~~~v~~~~~~~~~--~~~~D~i~aiii~~~i~~~~~~~~~e~~~~L~ 269 (363)
+..+.....|...|.+. ++|++++.....+ |.++||+.+++|+++|+.+.+++++++...|+
T Consensus 189 ~~~~~~~~~~i~g~~~~~m~gifLHVLaDtlg-SvGviist~Li~~~gw~~aDpicsllIailIf~sv~PL~k~s~~iLL 267 (354)
T KOG1484|consen 189 WDLHHHAHGHIHGHSHENMPGIFLHVLADTLG-SVGVIISTLLIKLFGWMIADPICSLLIAILIFLSVLPLLKYSGKILL 267 (354)
T ss_pred cccccccccccCCcccccccchhHHHHHHHhc-chHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11133556777899998 5888877766653 56999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh--cCCCccccceeEEEEecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 017950 270 GRTAPAEYLAKLTYLIWN--HHEEIKYIETVRAYNFGCQ-YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFV 346 (363)
Q Consensus 270 g~s~~~e~~~~I~~~~~~--~~~~V~~v~~v~~~~~G~~-~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~V 346 (363)
.++ ||+..+.+.+.+.+ ..++|.++.+-|.|..+++ +...+|+.+.++. +.+.+...+.+++++. +|.+.+|
T Consensus 268 q~t-Pp~~~~~l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~da---de~~vl~~V~~~~~~~-gV~~ltv 342 (354)
T KOG1484|consen 268 QRT-PPHLENSLKQCLRQISTLDGVTSVQNPHFWTLESGSVVGTLHLQVSSDA---DEQSVLAHVTRKLEDA-GVKDLTV 342 (354)
T ss_pred hcC-ChhhhhHHHHHHHHhhccccceeeccCceeeccCCceEEEEEEEEecCc---chhHHHHHHHHHHHhc-ceeEEEE
Confidence 875 55554444432221 3699999999999999999 9999999999887 5677888999999876 7999999
Q ss_pred EEeeCC
Q 017950 347 HVDFNA 352 (363)
Q Consensus 347 hid~~~ 352 (363)
|+|.+.
T Consensus 343 Qv~~~~ 348 (354)
T KOG1484|consen 343 QVEKEN 348 (354)
T ss_pred EEeccc
Confidence 988764
No 10
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.3e-29 Score=233.30 Aligned_cols=268 Identities=14% Similarity=0.217 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHHHH
Q 017950 75 AIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMA 154 (363)
Q Consensus 75 ~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~~~ 154 (363)
-++.-++++++++++|++.++.++|++|+||++|+++|+++.++++++.+.+++.+..+|||||.|.|.+++++.++++.
T Consensus 10 rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~ 89 (404)
T KOG1483|consen 10 RLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLT 89 (404)
T ss_pred ceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999878889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Q 017950 155 TLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCR------------------------------- 203 (363)
Q Consensus 155 ~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~------------------------------- 203 (363)
.+.+.++.|+++|++++...+ .+...+.+.+++++.|.+-+....
T Consensus 90 alc~~I~~EA~~R~I~p~~i~----~P~~vL~vgi~gLi~Nvlg~~lfhdhg~~h~~~~H~h~hg~~~~~~~~~~~~~~~ 165 (404)
T KOG1483|consen 90 ALCVSILIEAIERIIEPHHIE----NPILVLYVGIIGLISNVLGLFLFHDHGHDHGHGVHGHSHGGMKGFIGLNLTHLHS 165 (404)
T ss_pred HHHHHHHHHHHHhhcCCcccc----CceeeehhhHHHHHHHHHHhheeeccCcccCCcCCCCCCCccccchhhhccCCch
Confidence 999999999999999887653 223345555666666654221110
Q ss_pred ---------H-------------------h-----------------------------CCHHHHHhHHHhhHHHHHHHH
Q 017950 204 ---------R-------------------F-----------------------------KNEIVRAYAQDHFFDVITNSI 226 (363)
Q Consensus 204 ---------~-------------------~-----------------------------~s~~l~a~~~~~~~D~~~~~~ 226 (363)
+ . ++.+++..+.+.+.|++.| +
T Consensus 166 ~~~G~~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~-I 244 (404)
T KOG1483|consen 166 HAIGCNTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGS-I 244 (404)
T ss_pred hccCCcchhhccccCCCCcchhhhccccccCCCCCCCccccCCcccccchhhhhhhhhhccccccceeeeeecccccc-e
Confidence 0 0 0011222344556677776 4
Q ss_pred HHHHHHHHHHh----h-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCccccceeEEE
Q 017950 227 GLATALLAIKF----Y-WWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAY 301 (363)
Q Consensus 227 ~v~~~~~~~~~----~-~~~D~i~aiii~~~i~~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~ 301 (363)
+++.+++..|+ | .|+||+.+++++++++.+++++.+++...|++.+|..-..+++.+.+.+ .|||.+||++++|
T Consensus 245 ~Vi~~A~~v~~t~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~~-~~gv~~vh~lhvW 323 (404)
T KOG1483|consen 245 IVIVSALFVYKTEYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLLT-VPGVISVHDLHVW 323 (404)
T ss_pred EEEEEEEEEEecceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHhc-Ccceeeeeeeeee
Confidence 44444444443 2 4999999999999999999999999999999876655558889988875 9999999999999
Q ss_pred Ee-cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEeeCC
Q 017950 302 NF-GCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNA 352 (363)
Q Consensus 302 ~~-G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~~ 352 (363)
++ |..+.+.+||.++.. .+--+++++++..+.+. +|..+|++.|+.+
T Consensus 324 qL~~~r~IAt~Hi~~~~p---~~~~~~a~~ir~~fh~~-GIhs~TiqPeF~~ 371 (404)
T KOG1483|consen 324 QLAGSRIIATIHIQIQNP---KEYMKIAEKIRSYFHDQ-GIHSTTIQPEFAP 371 (404)
T ss_pred eeccceEEEEEEEEecCc---HHHHHHHHHHHHHHHhc-CCcceeeccchhh
Confidence 99 555999999999643 24458999999999885 9999999999887
No 11
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.2e-26 Score=202.91 Aligned_cols=276 Identities=17% Similarity=0.200 Sum_probs=232.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhc-CCCCCCCCCcchhHhhhHHHH
Q 017950 70 KNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMK-KPNQYQYPIGKNRMQPVGIVV 148 (363)
Q Consensus 70 ~~~~~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~-r~~~~~~P~G~~r~E~l~~li 148 (363)
..+++.+..|++.+++++...+++|+.+||.+++-|++.|+.|+.-..+++...|... +|.+.|||||++-+||+...+
T Consensus 16 ~~eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~i 95 (314)
T COG3965 16 SNEQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLAI 95 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhhh
Confidence 4566889999999999999999999999999999999999999999999999888776 666679999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHhHHHhhHHHHHH
Q 017950 149 FASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRR----FKNEIVRAYAQDHFFDVITN 224 (363)
Q Consensus 149 ~~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~----~~s~~l~a~~~~~~~D~~~~ 224 (363)
.|.+++.++++.++.|+..+++|..+ + .+.+++++.+.+...+...++..+| .+|+-+.++...|..|...+
T Consensus 96 ng~ll~ll~lyAlinAl~~l~dGGR~-v---~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS 171 (314)
T COG3965 96 NGTLLALLCLYALINALGSLLDGGRE-V---EPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLS 171 (314)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCcc-c---cccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHH
Confidence 99999999999999999999999875 3 3578899999999999999988866 45788899999999999985
Q ss_pred HHHHHHHHHHHHh---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCccc-
Q 017950 225 SIGLATALLAIKF---------YWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKY- 294 (363)
Q Consensus 225 ~~~v~~~~~~~~~---------~~~~D~i~aiii~~~i~~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~~V~~- 294 (363)
.+++.+++..+. .+|+||+.-.+++++++..+.++++.+.++.+.-+ |.|..+++...+.+..+....
T Consensus 172 -~al~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmt-P~el~q~ies~~~~~v~k~~f~ 249 (314)
T COG3965 172 -AALFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSALREILLMT-PNELQQSIESHAHEIVEKYGFP 249 (314)
T ss_pred -HHHHHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHhcCc
Confidence 667767666554 35999999999999999999999999999999865 558777777666432222111
Q ss_pred cceeEEEEecCeEEEEEEEEeCCCCC---HHHHHHHHHHHHHHHhcCCCccEEEEEEeeC
Q 017950 295 IETVRAYNFGCQYFVEADVVLPAEMS---LSEAHNIGESLQEKLEQLPEVERAFVHVDFN 351 (363)
Q Consensus 295 v~~v~~~~~G~~~~v~v~I~~~~~~~---l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~ 351 (363)
=+++++-+.|+..++|+|+.+|++.+ +++-++|.+++++.|.++|.-...||.+..+
T Consensus 250 ~~~~yvArVGr~l~IEi~fiip~~~~ar~Ved~d~Irdei~~slg~~g~~rwltvsfT~D 309 (314)
T COG3965 250 SYHVYVARVGRGLFIEIHFIIPRESDARNVEDWDDIRDEIGQSLGSLGYERWLTVSFTRD 309 (314)
T ss_pred hHHHHHHHhccceEEEEEEEeCCccCCccchhHHHHHHHHHHHhhcCCcCceEEEEEecc
Confidence 12344667899999999999988755 8899999999999999888777788776544
No 12
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=99.90 E-value=3.7e-23 Score=190.44 Aligned_cols=207 Identities=16% Similarity=0.141 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHH
Q 017950 70 KNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVF 149 (363)
Q Consensus 70 ~~~~~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~ 149 (363)
+...|++.+++++|++-+.+|+.++++|||.+|+|+++||++|..++++++++++.+.+.||..|||||+++.++..||.
T Consensus 203 k~s~rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLIS 282 (503)
T KOG2802|consen 203 KGSGRVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLIS 282 (503)
T ss_pred cCCCceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHh
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHH-------------------HHHHhCCHH
Q 017950 150 ASIMATLGLQ-ILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMM-------------------YCRRFKNEI 209 (363)
Q Consensus 150 ~~~~~~~~~~-i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~-------------------~~~~~~s~~ 209 (363)
|+.+++.|.. .++.+++.|++|++++ +..|+..+...+++......+ |.++.++|.
T Consensus 283 gvGIfc~G~GlSiyhGv~gLlhpePi~----~l~~ay~il~gSl~~eGasllvAi~evkr~Ak~~gmSi~dYV~~~~DPs 358 (503)
T KOG2802|consen 283 GVGIFCMGCGLSIYHGVMGLLHPEPIE----SLLWAYCILAGSLVSEGASLLVAINEVKRNAKAKGMSIYDYVMESRDPS 358 (503)
T ss_pred ccceeeecccchhhhccccccCCCCCc----chHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHcCCCHHHHHhhcCCCc
Confidence 9999888877 5899999999998763 467888777777776554332 223345565
Q ss_pred HHHhHHHhhHHHHHHHHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 017950 210 VRAYAQDHFFDVITNSIGLATALLAIKF-----YWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYL 284 (363)
Q Consensus 210 l~a~~~~~~~D~~~~~~~v~~~~~~~~~-----~~~~D~i~aiii~~~i~~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~ 284 (363)
..+.. ..|... ..|+++++...-+ .|..|++|+++|+.++...
T Consensus 359 ~nvVl---~EDtAA-VtGv~IAaa~m~lss~tgnPIyD~~GSivvGaLLGmV---------------------------- 406 (503)
T KOG2802|consen 359 TNVVL---LEDTAA-VTGVIIAAACMGLSSITGNPIYDSLGSIVVGALLGMV---------------------------- 406 (503)
T ss_pred ceEEE---ecchHH-HHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHH----------------------------
Confidence 55432 334443 3444444433322 5899999999998876543
Q ss_pred HHhcCCCccccceeEEEEecCe-EEEEEEEEeCCCC
Q 017950 285 IWNHHEEIKYIETVRAYNFGCQ-YFVEADVVLPAEM 319 (363)
Q Consensus 285 ~~~~~~~V~~v~~v~~~~~G~~-~~v~v~I~~~~~~ 319 (363)
+.+++|++..-+|+. +....+|.+|+.+
T Consensus 407 -------e~diyDvK~~diG~g~vRfKAE~DFdGr~ 435 (503)
T KOG2802|consen 407 -------ENDIYDVKATDIGLGKVRFKAEVDFDGRV 435 (503)
T ss_pred -------HHhhhhccceeeccceeEEEEEeccCchh
Confidence 123888999999999 8899999998764
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.35 E-value=5.9e-06 Score=78.25 Aligned_cols=93 Identities=18% Similarity=0.206 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHH
Q 017950 73 RVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASI 152 (363)
Q Consensus 73 ~~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~ 152 (363)
-.+...++++|..+...+...+..+||.+|.||+.|+..|+++++..++++-... +|+..++++++++.+++
T Consensus 120 ~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~~~~--------~g~~~lD~i~a~~I~~~ 191 (304)
T COG0053 120 LGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLGSL--------LGWPWLDPLAALLISLY 191 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------hCcHHHHHHHHHHHHHH
Confidence 3677788899999999999999999999999999999999999999999987322 58999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCC
Q 017950 153 MATLGLQILFESGRELFTEAQ 173 (363)
Q Consensus 153 ~~~~~~~i~~esi~~l~~~~~ 173 (363)
++..++.++++++..|++...
T Consensus 192 Il~~~~~~~~~s~~~L~d~~~ 212 (304)
T COG0053 192 ILKTGFRLFKESVNELMDAAL 212 (304)
T ss_pred HHHHHHHHHHHHHHHHhCcCC
Confidence 999999999999999998554
No 14
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=98.19 E-value=1.4e-05 Score=74.38 Aligned_cols=92 Identities=23% Similarity=0.233 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHHH
Q 017950 74 VAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIM 153 (363)
Q Consensus 74 ~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~~ 153 (363)
.+...++++|.+++..+...+..++|.++.||+.|++.|+++++..+++...+. ||+.++|++++++.++++
T Consensus 98 ~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~--------~~~~~~D~l~~i~i~~~i 169 (268)
T TIGR01297 98 IVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIY--------FGWHWADPIAALLISLLI 169 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHH
Confidence 456678889999999999889999999999999999999999999988887654 568899999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCC
Q 017950 154 ATLGLQILFESGRELFTEAQ 173 (363)
Q Consensus 154 ~~~~~~i~~esi~~l~~~~~ 173 (363)
+..++.++++++..+++..+
T Consensus 170 ~~~~~~l~~~~~~~Ll~~~~ 189 (268)
T TIGR01297 170 LYTAFRLLKESINVLLDAAP 189 (268)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999998764
No 15
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=98.18 E-value=2.3e-05 Score=74.23 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHHH
Q 017950 74 VAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIM 153 (363)
Q Consensus 74 ~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~~ 153 (363)
.+...++++|.++...+...+..++|.++.||+.|+..|+++++.++.+...+. +|+..+|++++++.++++
T Consensus 119 ~~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~--------~g~~~~D~i~aiii~~~i 190 (299)
T PRK09509 119 IVTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIYI 190 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hChHHHHHHHHHHHHHHH
Confidence 345677788888888888888899999999999999999999998888876643 478889999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCC
Q 017950 154 ATLGLQILFESGRELFTEAQP 174 (363)
Q Consensus 154 ~~~~~~i~~esi~~l~~~~~~ 174 (363)
+..++.++++++..|++..++
T Consensus 191 l~~~~~i~~~~~~~Ll~~~~~ 211 (299)
T PRK09509 191 LYSALRMGYEAVQSLLDRALP 211 (299)
T ss_pred HHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999986543
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=97.45 E-value=0.0012 Score=62.97 Aligned_cols=90 Identities=24% Similarity=0.234 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHHHHHH
Q 017950 77 YASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATL 156 (363)
Q Consensus 77 ~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~~~~~ 156 (363)
..++++|.+.+... .-+-..+|.++.||+.|...|+++++.++++...... .|+..++++++++++++++..
T Consensus 129 ~~~~~~~~~~~~~~-~~~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~-------~g~~~~Dpi~~ilis~~i~~~ 200 (312)
T PRK03557 129 VAGLLANILSFWLL-HHGSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIW-------TGWTPADPILSILVSVLVLRS 200 (312)
T ss_pred HHHHHHHHHHHHHH-hcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcchhHHHHHHHHHHHHHH
Confidence 34555665443322 2233468899999999999999999988777754431 245569999999999999999
Q ss_pred HHHHHHHHHHHhhccCCC
Q 017950 157 GLQILFESGRELFTEAQP 174 (363)
Q Consensus 157 ~~~i~~esi~~l~~~~~~ 174 (363)
++.++++++..|++..++
T Consensus 201 ~~~l~~~~~~~Lld~~p~ 218 (312)
T PRK03557 201 AWRLLKESVNELLEGAPV 218 (312)
T ss_pred HHHHHHHHHHHHHccCCC
Confidence 999999999999986654
No 17
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=96.63 E-value=0.0073 Score=58.49 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHHH
Q 017950 74 VAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIM 153 (363)
Q Consensus 74 ~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~~ 153 (363)
+.+.+++....+.+.+-.+++..++|-.+.|-|.|-..|++++.+.+++...+. |++.-++|+|+++++.++
T Consensus 231 ~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~--------~~~~~lDP~gailVS~~i 302 (412)
T KOG1485|consen 231 WLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAY--------YYNYWLDPIGAILVSTYI 302 (412)
T ss_pred hhheehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------hhhhcccchhhhhhheeh
Confidence 344455566666677777888999999999999999999999999999998865 344779999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCC
Q 017950 154 ATLGLQILFESGRELFTEAQ 173 (363)
Q Consensus 154 ~~~~~~i~~esi~~l~~~~~ 173 (363)
+..++....+++..|++...
T Consensus 303 i~t~~~t~~~~i~~Lvg~~a 322 (412)
T KOG1485|consen 303 IYTGGRTGLENIKELVGRSA 322 (412)
T ss_pred hhhhhHHHHHHHHHHhCCCC
Confidence 99999999999999997643
No 18
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=95.15 E-value=0.035 Score=51.85 Aligned_cols=90 Identities=23% Similarity=0.188 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc--hHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcch-hHhhhHHHHHHHH
Q 017950 76 IYASNAANLVLFLAKVYASAESR--SLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKN-RMQPVGIVVFASI 152 (363)
Q Consensus 76 l~~sl~~n~~l~v~k~~~~~~s~--S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~-r~E~l~~li~~~~ 152 (363)
..+++++|.++.....-.+--.+ |..+.+++.|+..|.+.++.++++.....-. ++. -+|++++++.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~-------~~~~~~D~v~~l~i~~~ 181 (284)
T PF01545_consen 109 ALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLG-------PWFWYADPVASLLIALF 181 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT--------STS-SSHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHHHH-------hcccccchhhhhHHHHH
Confidence 55677778777777776666677 9999999999999999998888776654332 233 4899999999999
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q 017950 153 MATLGLQILFESGRELFTEA 172 (363)
Q Consensus 153 ~~~~~~~i~~esi~~l~~~~ 172 (363)
++..++.++.+++..|+...
T Consensus 182 i~~~~~~~~~~~~~~Ll~~~ 201 (284)
T PF01545_consen 182 ILYSGYPLIKESIRILLDAS 201 (284)
T ss_dssp HHHHHHHHHHHHHHHHTT-S
T ss_pred Hhhhhhhchhhhhccccccc
Confidence 99999999999999999765
No 19
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=93.81 E-value=0.54 Score=44.19 Aligned_cols=92 Identities=20% Similarity=0.158 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHHHH
Q 017950 75 AIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMA 154 (363)
Q Consensus 75 ~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~~~ 154 (363)
+-.+++++|++.+..-.-. -..+.-+-+-.+|.+.|++.++...++.-.... +||...+|+.+++.+++++
T Consensus 130 va~~GL~vN~~~a~ll~~~--~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~-------~~w~~~Dpi~si~i~~lil 200 (296)
T COG1230 130 VAIIGLVVNLVSALLLHKG--HEENLNMRGAYLHVLGDALGSVGVIIAAIVIRF-------TGWSWLDPILSIVIALLIL 200 (296)
T ss_pred HHHHHHHHHHHHHHHhhCC--CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCccchHHHHHHHHHHH
Confidence 3445566665554442211 122788999999999999999887776544331 4677799999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCC
Q 017950 155 TLGLQILFESGRELFTEAQPE 175 (363)
Q Consensus 155 ~~~~~i~~esi~~l~~~~~~~ 175 (363)
..+..++.++..-++.+.+..
T Consensus 201 ~~a~~l~k~s~~iLle~~P~~ 221 (296)
T COG1230 201 SSAWPLLKESLNILLEGVPEG 221 (296)
T ss_pred HHHHHHHHHHHHHHhhcCCCc
Confidence 999999999999999877643
No 20
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=89.74 E-value=4.6 Score=31.66 Aligned_cols=52 Identities=27% Similarity=0.319 Sum_probs=38.0
Q ss_pred eEEEEe-cCeEEEEEEEEeCCCCCHH-HHHHHHHHHHHHHhcC--CCccEEEEEEe
Q 017950 298 VRAYNF-GCQYFVEADVVLPAEMSLS-EAHNIGESLQEKLEQL--PEVERAFVHVD 349 (363)
Q Consensus 298 v~~~~~-G~~~~v~v~I~~~~~~~l~-~~h~i~~~l~~~l~~~--~~v~~v~Vhid 349 (363)
+++... +..+.+++++.+....++. -+.++.+++++.+++. ..+.++.|+++
T Consensus 50 v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~ 105 (108)
T PF03780_consen 50 VKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE 105 (108)
T ss_pred eEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence 566655 6669999999998887754 5666777788888753 35667777775
No 21
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=89.47 E-value=4.3 Score=30.65 Aligned_cols=44 Identities=27% Similarity=0.378 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHH---HHHHHHHHHHHHHHHHH
Q 017950 218 FFDVITNSIGLATALLAIKFYWWIDPI---GAILIALYTMGNWGNTV 261 (363)
Q Consensus 218 ~~D~~~~~~~v~~~~~~~~~~~~~D~i---~aiii~~~i~~~~~~~~ 261 (363)
..|.+.+++|++.+.+.....|-+||+ +-++.+...+..+++.+
T Consensus 35 d~D~~fs~vgLl~g~IL~~~gwRldp~ll~~Q~l~~~~~i~f~~e~i 81 (84)
T PF07444_consen 35 DYDIFFSSVGLLYGLILWFQGWRLDPILLFGQMLLVGLLIFFGWETI 81 (84)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 468998889998888877778999999 55556666655555544
No 22
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=86.79 E-value=20 Score=33.81 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHh---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 017950 218 FFDVITNSIGLATALLAIKF---------YWWIDPIGAILIALYTMGNWGNTVMENVWSLIG 270 (363)
Q Consensus 218 ~~D~~~~~~~v~~~~~~~~~---------~~~~D~i~aiii~~~i~~~~~~~~~e~~~~L~g 270 (363)
..+++++++|++.+++...+ .+++-++.++++++++.+.++...-.....++-
T Consensus 78 ~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k~~de~~~ 139 (356)
T COG4956 78 VTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADKKRDEFLR 139 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhhhhHHHHH
Confidence 45667767777666554433 368999999999999999999988776666653
No 23
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=85.28 E-value=12 Score=33.97 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 017950 182 KWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAILIALYTMGNWGNTV 261 (363)
Q Consensus 182 ~~~~~i~~~~~~v~~~l~~~~~~~~s~~l~a~~~~~~~D~~~~~~~v~~~~~~~~~~~~~D~i~aiii~~~i~~~~~~~~ 261 (363)
..+......+.++...=....|+.+..+.-..-.|...|.++ +|+.-+.+.+.+...-.+.+-++..++++..+.|+.
T Consensus 36 ~~a~~~i~lA~i~DglDG~VAR~~~~~s~~G~~lDSLaD~Vs--FgVaPA~l~y~~~~~~~~~~~~~a~~~~~~~alRLA 113 (234)
T COG1183 36 EAALLLILLALILDGLDGRVARKLNAKSAFGAELDSLADLVS--FGVAPALLLYSSGLNTGPLGLLAALLYVLCGALRLA 113 (234)
T ss_pred HHHHHHHHHHHHHcccchHHHHhcCCcchHHHHHhHHHHHHH--hhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 446666777778888878888888776666778899999995 899877777665433378888888899999999999
Q ss_pred HHHHHhhc
Q 017950 262 MENVWSLI 269 (363)
Q Consensus 262 ~e~~~~L~ 269 (363)
|=|...--
T Consensus 114 rFN~~~~~ 121 (234)
T COG1183 114 RFNVKTND 121 (234)
T ss_pred HccCcccC
Confidence 98877554
No 24
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=85.16 E-value=69 Score=35.75 Aligned_cols=44 Identities=27% Similarity=0.265 Sum_probs=39.4
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEee
Q 017950 307 YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDF 350 (363)
Q Consensus 307 ~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~ 350 (363)
-.+.+++.+|++.+++++.++.+++++.+++.|+|++++..+-.
T Consensus 559 ~~~~v~v~lp~Gtsle~t~~~~~~ve~~L~~~p~V~~v~s~vG~ 602 (1021)
T PF00873_consen 559 GEFYVSVELPPGTSLEETDAIVKQVEDILKEDPEVKSVSSRVGR 602 (1021)
T ss_dssp SEEEEEEEESTTC-HHHHHHHHHHHHHHHHTTTTEEEEEEEESE
T ss_pred CceEEEEeeccCchHHHHHHHHHHHHHHHHhhhhhhccceEecc
Confidence 56889999999999999999999999999999999998887754
No 25
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=82.15 E-value=9.8 Score=32.43 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CCCccEEEEEEeeCC
Q 017950 278 LAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQ-LPEVERAFVHVDFNA 352 (363)
Q Consensus 278 ~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~-~~~v~~v~Vhid~~~ 352 (363)
-++|...+ ..+.+|++..+.-.|...+|-+++.= +..-..+.++.+++.+.+++ .|.+.+|+|.-||+.
T Consensus 56 A~~Ia~~v----~~v~~V~dA~vvVtg~~A~Vgv~~~~--~~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVsaDpd~ 125 (158)
T TIGR02898 56 ADEIASEA----AKVKGVKDATVVITGNYAYVGVDLTN--GLEGSVTDELKEKVAETVKSTDNRIANVYVSADPDT 125 (158)
T ss_pred HHHHHHHH----hcCCCCceEEEEEECCEEEEEEEcCC--CcchhhHHHHHHHHHHHHHhhCCCcceEEEEcCHHH
Confidence 34455444 44566778888889999888775543 33345678899999999987 899999999998863
No 26
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=81.55 E-value=17 Score=27.95 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCC--HHHHHHHHHHHHHHHhcCCCccEEEEEEeeCCC
Q 017950 279 AKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMS--LSEAHNIGESLQEKLEQLPEVERAFVHVDFNAT 353 (363)
Q Consensus 279 ~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~--l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~~~ 353 (363)
.+|..++. ..|++..-..+.+.+-|..=.+.+.|+..++.+ ..+..++++++++.|++.-++ ++.|++-+..+
T Consensus 7 ~~Ie~vl~-~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv-~~~V~lv~~gt 81 (96)
T PF14535_consen 7 SQIEEVLR-EFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGV-RPEVELVPPGT 81 (96)
T ss_dssp HHHHHHHC-TSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEEEE-TT-
T ss_pred HHHHHHHH-hCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCc-eEEEEEECCCC
Confidence 46777775 479988677888888887777888888888763 567888999999999864466 46677766644
No 27
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=80.22 E-value=26 Score=33.44 Aligned_cols=87 Identities=14% Similarity=0.075 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHhHHHhhHHHHHHHHHHHHHHHHHHh--------hhhhhHHHHHHHHHHHHH
Q 017950 184 MIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKF--------YWWIDPIGAILIALYTMG 255 (363)
Q Consensus 184 ~~~i~~~~~~v~~~l~~~~~~~~s~~l~a~~~~~~~D~~~~~~~v~~~~~~~~~--------~~~~D~i~aiii~~~i~~ 255 (363)
.+...+..+...++..+|+...+|..+-+++.+...|+.+..+|+.++.+.-+- ...+...++..=+++...
T Consensus 37 if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl 116 (354)
T KOG1484|consen 37 IFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVL 116 (354)
T ss_pred hHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHHHHH
Confidence 455566666777777788888888999999999999999876666655544332 125666777778888889
Q ss_pred HHHHHHHHHHHhhcC
Q 017950 256 NWGNTVMENVWSLIG 270 (363)
Q Consensus 256 ~~~~~~~e~~~~L~g 270 (363)
.++.+..|++..|++
T Consensus 117 ~a~fi~~Es~eRl~~ 131 (354)
T KOG1484|consen 117 IAFFIFSESVERLFD 131 (354)
T ss_pred HHHHHhHHHHHHhcC
Confidence 999999999999986
No 28
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=77.51 E-value=9.5 Score=32.86 Aligned_cols=68 Identities=10% Similarity=0.199 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CCCccEEEEEEeeC
Q 017950 276 EYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQ-LPEVERAFVHVDFN 351 (363)
Q Consensus 276 e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~-~~~v~~v~Vhid~~ 351 (363)
+.-++|...+. .+.+|.+..+.-.|...+|-+.+..+ . ....++.+++++++++ .|.+.+|+|.-||.
T Consensus 75 ~~a~~i~~~v~----~~~~V~~A~vvv~~~~a~Vav~~~~~-~---~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~~ 143 (177)
T PF09580_consen 75 QLADRIANRVK----KVPGVEDATVVVTDDNAYVAVDLDFN-R---FNTKKIKKKVEKAVKSADPRIYNVYVSTDPD 143 (177)
T ss_pred HHHHHHHHHHh----cCCCceEEEEEEECCEEEEEEEeccc-c---cchhHHHHHHHHHHHHhCCCccEEEEEcCHH
Confidence 34556666664 35567788888889999999998833 2 3567899999999986 79999999988875
No 29
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=73.22 E-value=40 Score=25.90 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=36.6
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEeeCCCCCCCC
Q 017950 305 CQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNATHQLEH 358 (363)
Q Consensus 305 ~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~~~~~~~h 358 (363)
..+.+.+.+-.+.. + ....+.+.+++.++.+++++.+.|.++......++|
T Consensus 37 ~~v~i~l~l~~p~~-~--~~~~l~~~i~~al~~l~gv~~v~v~i~~~~~~~~~~ 87 (99)
T TIGR02945 37 GHVDIQMTLTAPNC-P--VAGSMPGEVENAVRAVPGVGSVTVELVWDPPWTPER 87 (99)
T ss_pred CeEEEEEEECCCCC-C--hHHHHHHHHHHHHHhCCCCceEEEEEEeeCCCChHH
Confidence 44555555544433 3 445688999999999999999999998877666654
No 30
>TIGR00473 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase. This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding E.coli protein.
Probab=72.43 E-value=58 Score=27.47 Aligned_cols=82 Identities=18% Similarity=0.113 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 017950 182 KWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAILIALYTMGNWGNTV 261 (363)
Q Consensus 182 ~~~~~i~~~~~~v~~~l~~~~~~~~s~~l~a~~~~~~~D~~~~~~~v~~~~~~~~~~~~~D~i~aiii~~~i~~~~~~~~ 261 (363)
.++......+.+....=....|+.+..+-...-.|...|.++ +|+.-+.+...+. ...+.+.++..++++..++|+.
T Consensus 21 ~~a~~~l~~a~~~D~~DG~vAR~~~~~s~~G~~lDsl~D~vs--fgvaPa~l~~~~~-~~~~~~~~~~~~~~l~~a~RLA 97 (151)
T TIGR00473 21 VRACFLILLSMFFDFLDGRVARKTNRVSDFGKELDSLADVVS--FGVAPAALAYSIG-NFQTIGILVAALFFLCGILRLA 97 (151)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHcCCCChHHHHHHHHHHHHH--HHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHH
Confidence 455555666777777777777887755666677888999995 6777666655431 1233344445678889999999
Q ss_pred HHHHH
Q 017950 262 MENVW 266 (363)
Q Consensus 262 ~e~~~ 266 (363)
+-|..
T Consensus 98 rFN~~ 102 (151)
T TIGR00473 98 RFNVL 102 (151)
T ss_pred Hhccc
Confidence 98875
No 31
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=67.87 E-value=85 Score=27.51 Aligned_cols=103 Identities=14% Similarity=0.088 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHhHHHhhHHHHHH---HHHH
Q 017950 153 MATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRRF-KNEIVRAYAQDHFFDVITN---SIGL 228 (363)
Q Consensus 153 ~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~~-~s~~l~a~~~~~~~D~~~~---~~~v 228 (363)
+++.|+..+..++..++....... .....++.++++......++.|..|. .|.+.+...+....-...+ -+.+
T Consensus 102 Ll~lg~~aLlsgitaff~~nA~~~---GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v 178 (226)
T COG4858 102 LLFLGAMALLSGITAFFQKNAQVY---GLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAV 178 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcch---hHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHH
Confidence 344555566777788887664321 11112333444444455555555443 2222222221111111111 0111
Q ss_pred HHHH--HHHHhhhhhhHHHHHHHHHHHHHHHH
Q 017950 229 ATAL--LAIKFYWWIDPIGAILIALYTMGNWG 258 (363)
Q Consensus 229 ~~~~--~~~~~~~~~D~i~aiii~~~i~~~~~ 258 (363)
.++- +-.-+.+-+||+.-.+++..++..-+
T Consensus 179 ~i~t~~lPtslN~~L~pi~l~IiGav~lalRf 210 (226)
T COG4858 179 MIATVFLPTSLNPQLPPIALTIIGAVILALRF 210 (226)
T ss_pred HHHHhhCCCcCCcCCchHHHHHHHHHHHHHHH
Confidence 1000 00011468999988888887775444
No 32
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=66.47 E-value=31 Score=29.89 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcC-CCcc-------ccceeEEEEec-C--eEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEE
Q 017950 276 EYLAKLTYLIWNHH-EEIK-------YIETVRAYNFG-C--QYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERA 344 (363)
Q Consensus 276 e~~~~I~~~~~~~~-~~V~-------~v~~v~~~~~G-~--~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v 344 (363)
...++|.+.+.+.. |++. -|+++.+...+ . ++.+.+.+-.+. .+ ....+.+.++++++++|++..+
T Consensus 73 ~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~-c~--~~~~L~~dV~~aL~~l~gV~~V 149 (174)
T TIGR03406 73 DNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPG-CG--MGPVLVEDVEDKVLAVPNVDEV 149 (174)
T ss_pred ccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCC-Cc--HHHHHHHHHHHHHHhCCCceeE
Confidence 33466776664322 3321 24455554411 2 344444443332 22 4567889999999999999999
Q ss_pred EEEEeeCCCCCCC
Q 017950 345 FVHVDFNATHQLE 357 (363)
Q Consensus 345 ~Vhid~~~~~~~~ 357 (363)
.|.+..++.=+++
T Consensus 150 ~V~l~~dp~W~~~ 162 (174)
T TIGR03406 150 EVELVFDPPWSRE 162 (174)
T ss_pred EEEEEecCCCChH
Confidence 9999888765543
No 33
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=66.02 E-value=33 Score=27.32 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=39.0
Q ss_pred HHHhhcCCCCCHHH-----HHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEe
Q 017950 264 NVWSLIGRTAPAEY-----LAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVL 315 (363)
Q Consensus 264 ~~~~L~g~s~~~e~-----~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~ 315 (363)
.+..|+|+..|++. ...|++.++ .+|.|.+|+++.+-..|+.+.+.+.|..
T Consensus 52 ele~lig~~~~~~~~~sEi~r~I~EaL~-~d~rI~~V~~f~f~~~~~~l~v~f~V~t 107 (112)
T PF10934_consen 52 ELEDLIGKNYPREYVESEIEREIEEALL-QDPRITSVENFSFEWEGDSLYVSFTVTT 107 (112)
T ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHh-cCCCcceEEEEEEEEECCEEEEEEEEEE
Confidence 45678887555443 445666665 5899999999999999999988888864
No 34
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=62.63 E-value=15 Score=26.34 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=28.0
Q ss_pred eEEEEecC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 017950 298 VRAYNFGC-QYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFV 346 (363)
Q Consensus 298 v~~~~~G~-~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~V 346 (363)
++--...+ ++.+.+.+.. +..+ ....+.+++++.|+++|++..|.|
T Consensus 26 V~~i~i~~~~V~v~l~l~~-~~~~--~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 26 VRDISIEGGKVSVSLELPT-PACP--AAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEECTCEEEEEE--SS-TTHT--THHHHHHHHHHHHHTSTT-SEEEE
T ss_pred eeEEEEECCEEEEEEEECC-CCch--HHHHHHHHHHHHHHhCCCCceEeC
Confidence 34344433 3555444432 2333 567899999999999999988765
No 35
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=62.02 E-value=1.6e+02 Score=29.47 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhHHHhhHHHH
Q 017950 143 PVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVI 222 (363)
Q Consensus 143 ~l~~li~~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~~~s~~l~a~~~~~~~D~~ 222 (363)
++--.++-.+|.+.-+.+..|-=++++.++-.+ +......++.++.+.++...+|..... +++..+..+.-.-+|+.
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~--~rka~lPi~AAlGGmivPAlIY~~~n~-~~~~~~GWgIPmATDIA 143 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSS--FKKASFPVIAALGGMIAPGLIYFFLNA-DTPSQHGFGIPMATDIA 143 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC--hHHHHHHHHHHHhccHHHHHHHhheec-CCCccCccccccHHHHH
Confidence 455567777777777777777777787766432 233344566777778888888877654 33446666666778888
Q ss_pred HHHHHHHHHHHHHHh----------hhhhhHHHHHHH
Q 017950 223 TNSIGLATALLAIKF----------YWWIDPIGAILI 249 (363)
Q Consensus 223 ~~~~~v~~~~~~~~~----------~~~~D~i~aiii 249 (363)
. ++|++ +.++... --.+|-+++++|
T Consensus 144 F-AlgvL-allG~rvP~~LrvFLlaLAIvDDlgAI~V 178 (438)
T PRK14856 144 F-ALGVI-MLLGKRVPTALKVFLITLAVADDLGAIVV 178 (438)
T ss_pred H-HHHHH-HHhcCCCCHHHHHHHHHHHHHHHhhhHhh
Confidence 8 46665 4444322 135666666554
No 36
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=60.66 E-value=97 Score=25.68 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcchH
Q 017950 78 ASNAANLVLFLAKVYASAESRSL 100 (363)
Q Consensus 78 ~sl~~n~~l~v~k~~~~~~s~S~ 100 (363)
+++++|+++.++-..++.+.++.
T Consensus 79 ls~v~Nilvsv~~~~~~~~~~~~ 101 (142)
T PF11712_consen 79 LSTVFNILVSVFAVFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888887776665543333
No 37
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=59.26 E-value=47 Score=23.38 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEE
Q 017950 275 AEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERA 344 (363)
Q Consensus 275 ~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v 344 (363)
|..+++|.....+ .+ -.++.+.+......-...+.++++.+- +..+.+.+.|+++++|.+|
T Consensus 3 ~GvL~Ri~~vf~r--Rg-~nI~sl~v~~~~~~~~~riti~v~~~~------~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 3 PGVLNRITGVFRR--RG-FNIESLSVGPTEDPGISRITIVVSGDD------REIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp TTHHHHHHHHHHT--TT--EECEEEEEE-SSTTEEEEEEEEES-C------CHHHHHHHHHHCSTTEEEE
T ss_pred cHHHHHHHHHHhc--CC-eEEeeEEeeecCCCCEEEEEEEEeeCc------hhHHHHHHHHhccCCeEeC
Confidence 4678899988853 44 478888888865554555566665521 2345688888888888654
No 38
>PRK00907 hypothetical protein; Provisional
Probab=57.00 E-value=81 Score=24.26 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=43.7
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCCccccceeEEEEe--cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCcc
Q 017950 268 LIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNF--GCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVE 342 (363)
Q Consensus 268 L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~--G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~ 342 (363)
.+|. ..+++.+.|..++.+|.|+.. -.++..+.. |....+.+.|.+.. .+-.+.|.+.|.+.|.|.
T Consensus 22 VmG~-a~~~l~~~V~~vv~~h~p~~~-~~~i~~r~Ss~GkY~Svtv~i~ats-------~eQld~iY~~L~~~~~Vk 89 (92)
T PRK00907 22 AMGT-AERGLETELPRLLAATGVELL-QERISWKHSSSGKYVSVRIGFRAES-------REQYDAAHQALRDHPEVK 89 (92)
T ss_pred EEEc-CchhHHHHHHHHHHHhCCCCC-cCcEEeccCCCCEEEEEEEEEEECC-------HHHHHHHHHHHhhCCCEE
Confidence 3564 578899999999988877643 335555555 44456666666543 233577888888888874
No 39
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=54.95 E-value=1.2e+02 Score=33.90 Aligned_cols=67 Identities=9% Similarity=0.204 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCC-Cc
Q 017950 274 PAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLP-EV 341 (363)
Q Consensus 274 ~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~-~v 341 (363)
|+++.+.|.+-+++...++.++++++.......-.+.++...+.++.. ...++.+++.+.-.++| ++
T Consensus 65 ~~~vE~~Vt~piE~~l~~v~gv~~i~S~S~~G~s~i~v~f~~g~d~~~-a~~ev~~~i~~~~~~LP~~~ 132 (1040)
T PRK10503 65 PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDV-AEQEVQAAINAATNLLPSDL 132 (1040)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccEEEEEecCCeEEEEEEEECCCChHH-HHHHHHHHHHHHHHhCCCcc
Confidence 456677788888888888899999998777554556666655444322 12345555544333577 44
No 40
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=52.63 E-value=1e+02 Score=23.49 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=40.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCcc
Q 017950 269 IGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVE 342 (363)
Q Consensus 269 ~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~ 342 (363)
+| .+.+++.+++.+.+.++.|+ .....+-.+....+.+..+.|.+.. .+.++ .|.+.+.|.+.+.|.
T Consensus 21 mG-~a~~~l~~~vv~vvqr~ap~-~~~~~~~~k~SSkGnY~svsI~i~A-~~~EQ----~e~ly~eL~~~~~Vk 87 (90)
T COG2921 21 MG-AAGPELEDQVVEVVQRHAPG-DYTPRVSWKPSSKGNYLSVSITIRA-TNIEQ----VEALYRELRKHEIVK 87 (90)
T ss_pred hc-ccchhHHHHHHHHHHHHCCc-ccCceeeeccCCCCceEEEEEEEEE-CCHHH----HHHHHHHHhhCCceE
Confidence 45 46889999999999888777 3455554455544444444444433 23443 456667777777664
No 41
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=52.56 E-value=1e+02 Score=23.57 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=16.0
Q ss_pred EEEEEEEEeCCCCCHHHHHHHH
Q 017950 307 YFVEADVVLPAEMSLSEAHNIG 328 (363)
Q Consensus 307 ~~v~v~I~~~~~~~l~~~h~i~ 328 (363)
+.|+++|.+|++|+.+++.++.
T Consensus 2 flV~m~V~~P~~~~~~~~~~i~ 23 (90)
T TIGR03221 2 FHVRMDVNLPVDMPAEKAAAIK 23 (90)
T ss_pred eEEEEEeeCCCCCCHHHHHHHH
Confidence 4577777888888877777664
No 42
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=49.83 E-value=1.4e+02 Score=33.38 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCC
Q 017950 274 PAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPE 340 (363)
Q Consensus 274 ~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~ 340 (363)
++++.+++.+-+++...++.+++++..........+.+....+.+.+.. ..++.+++++.-.++|.
T Consensus 55 ae~ve~~Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~~d~d~A-~~~V~~kv~~~~~~LP~ 120 (1009)
T COG0841 55 AETVEDSVTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELGTDPDTA-AVQVQNKIQQAESRLPS 120 (1009)
T ss_pred HHHHHHHHhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCCCChHHH-HHHHHHHHHHHHhcCCC
Confidence 4556778999888888899999999988887555555555554443222 22555555554445664
No 43
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.49 E-value=82 Score=22.48 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh
Q 017950 274 PAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLE 336 (363)
Q Consensus 274 ~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~ 336 (363)
-|....++...+.+ -+ .+|++.++...+.++.+++-.+.+++-......+..+++++.|+
T Consensus 11 r~gLl~~i~~~l~~--~~-l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~ 70 (73)
T cd04900 11 RPGLFARIAGALDQ--LG-LNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALE 70 (73)
T ss_pred CCCHHHHHHHHHHH--CC-CCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHH
Confidence 34677888888854 23 57999999989877788877776664321112233344555543
No 44
>PRK02047 hypothetical protein; Provisional
Probab=49.28 E-value=1.2e+02 Score=23.21 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHhcCCCccccceeEEEEe--cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCcc
Q 017950 273 APAEYLAKLTYLIWNHHEEIKYIETVRAYNF--GCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVE 342 (363)
Q Consensus 273 ~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~--G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~ 342 (363)
..+++.+.|.+++.++.|+.. -.++..+.. |....+.+.+.+.. .+-.+.+-+.|.+.|.|.
T Consensus 25 ~~~~~~~~v~~iv~~~~~~~~-~~~i~~k~Ss~GkY~Svtv~v~v~s-------~eq~~~iY~~L~~~~~Vk 88 (91)
T PRK02047 25 AHPEFADTIFKVVSVHDPEFD-LEKIEERPSSGGNYTGLTITVRATS-------REQLDNIYRALTGHPMVK 88 (91)
T ss_pred CcHhHHHHHHHHHHHhCCCCc-cCceEEccCCCCeEEEEEEEEEECC-------HHHHHHHHHHHhhCCCEE
Confidence 466788899999987766543 345555555 44456666666643 234577788888888774
No 45
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=48.42 E-value=93 Score=21.81 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCCccccceeEEEEecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEe
Q 017950 277 YLAKLTYLIWNHHEEIKYIETVRAYNFGCQ-YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVD 349 (363)
Q Consensus 277 ~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~-~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid 349 (363)
..+++.+.+. ..|+|..++.+- |+. +.+.+.. ++ . .++.+-+.+.|.+.|+|.+...++-
T Consensus 11 ~~~~~~~~l~-~~p~V~~~~~vt----G~~d~~~~v~~---~d--~---~~l~~~i~~~l~~~~gV~~~~t~iv 71 (74)
T PF01037_consen 11 AYDEFAEALA-EIPEVVECYSVT----GEYDLILKVRA---RD--M---EELEEFIREKLRSIPGVRRTETSIV 71 (74)
T ss_dssp HHHHHHHHHH-TSTTEEEEEEES----SSSSEEEEEEE---SS--H---HHHHHHHHHTHHTSTTEEEEEEEEE
T ss_pred hHHHHHHHHH-cCCCEEEEEEEe----CCCCEEEEEEE---CC--H---HHHHHHHHHHhhcCCCEEEEEEEEE
Confidence 4677777775 478887664442 554 5555554 32 2 3444555555888999998776653
No 46
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=48.39 E-value=1.5e+02 Score=33.19 Aligned_cols=65 Identities=12% Similarity=0.041 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHH-HHHHHHHHHHHhcCC
Q 017950 274 PAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEA-HNIGESLQEKLEQLP 339 (363)
Q Consensus 274 ~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~-h~i~~~l~~~l~~~~ 339 (363)
|.+..+++.+-+++...++.++++++.+..+++ ...+.+.++++.+..++ .++.+++.+...++|
T Consensus 54 ~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~~g-~s~i~v~f~~~~d~~~a~~~v~~~l~~~~~~LP 119 (1044)
T TIGR00915 54 AQTVQDTVTQVIEQQMNGIDGLRYMSSESDSDG-SMTITLTFEQGTDPDIAQVQVQNKLQLATPLLP 119 (1044)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEEcCCC-eEEEEEEEECCCChHHHHHHHHHHHHHHHhhCC
Confidence 456667788887766777888888887764333 33555555555555443 456666665555677
No 47
>PRK04998 hypothetical protein; Provisional
Probab=46.39 E-value=1.3e+02 Score=22.78 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHhcCCCccccceeEEEEe--cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCcc
Q 017950 273 APAEYLAKLTYLIWNHHEEIKYIETVRAYNF--GCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVE 342 (363)
Q Consensus 273 ~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~--G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~ 342 (363)
..+++.+.|..++.++.|+-. .++.+.. |....+.+.+.+.. .+-.+.+-+.|.+.|+|.
T Consensus 24 ~~~~~~~~v~~v~~~~~~~~~---~~~~r~S~~GkY~Svtv~v~v~s-------~eq~~~iY~~L~~~~~V~ 85 (88)
T PRK04998 24 ARPELVDQVVEVVQRHAPGDY---TPTVKPSSKGNYHSVSITITATS-------IEQVETLYEELAKIEGVR 85 (88)
T ss_pred CcHhHHHHHHHHHHHhCCCCC---CceEccCCCCEEEEEEEEEEECC-------HHHHHHHHHHHhcCCCEE
Confidence 367889999999987766532 2444444 55466777766653 234577788888888874
No 48
>PRK14646 hypothetical protein; Provisional
Probab=46.21 E-value=1.2e+02 Score=25.77 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=37.0
Q ss_pred cccceeEEEEecCeEEEEEEEEeCC--CCCHHHHHHHHHHHHHHHhc
Q 017950 293 KYIETVRAYNFGCQYFVEADVVLPA--EMSLSEAHNIGESLQEKLEQ 337 (363)
Q Consensus 293 ~~v~~v~~~~~G~~~~v~v~I~~~~--~~~l~~~h~i~~~l~~~l~~ 337 (363)
..+.++....-|....+.+.|.=+. .++++++..+++.+-..|..
T Consensus 22 ~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~ 68 (155)
T PRK14646 22 LKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIEN 68 (155)
T ss_pred CEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCc
Confidence 4677888888888888888887653 49999999999999999974
No 49
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=45.87 E-value=2.7e+02 Score=27.43 Aligned_cols=85 Identities=18% Similarity=0.100 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhHHHhhHHHH
Q 017950 143 PVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVI 222 (363)
Q Consensus 143 ~l~~li~~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~~~s~~l~a~~~~~~~D~~ 222 (363)
++--.++-.+|.+.-+.+..|-=+++..++-.+ +......+..++.+.++....|......++...+..+.-.-+|+.
T Consensus 58 sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~--~r~a~lPi~AAlGGmivPAlIy~~~n~g~~~~~~GWgIPmATDIA 135 (389)
T PRK09560 58 SLLHWINDGLMAVFFLLVGLEIKRELLEGQLSS--WQQRILPAIAAVGGMVVPALIYAAFNYNNPETLRGWAIPAATDIA 135 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHhchHHHHHHHheeecCCCcccCccccccHHHHH
Confidence 455556666677666667777777777766432 233344566677778888888777644222335666666677888
Q ss_pred HHHHHHHH
Q 017950 223 TNSIGLAT 230 (363)
Q Consensus 223 ~~~~~v~~ 230 (363)
. ++|++.
T Consensus 136 F-AlgvL~ 142 (389)
T PRK09560 136 F-ALGVLA 142 (389)
T ss_pred H-HHHHHH
Confidence 7 466653
No 50
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=45.73 E-value=1.5e+02 Score=23.64 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhc-CCCccccceeEEEEecCeEEEE-------EEEEeC---CCCCHHHHHHHHHHHHHHHhcCCCccE
Q 017950 275 AEYLAKLTYLIWNH-HEEIKYIETVRAYNFGCQYFVE-------ADVVLP---AEMSLSEAHNIGESLQEKLEQLPEVER 343 (363)
Q Consensus 275 ~e~~~~I~~~~~~~-~~~V~~v~~v~~~~~G~~~~v~-------v~I~~~---~~~~l~~~h~i~~~l~~~l~~~~~v~~ 343 (363)
.+..++|...+.+- +|++ .++ ++.+|--+.++ ++|.+. +..+ -+..+.+++++.+++.++++.
T Consensus 11 ~~~~~~i~~aL~~V~DPEi-~id---IvdLGLVy~v~i~~~~~~v~v~mtlT~~gCP--~~~~i~~~v~~al~~~~~v~~ 84 (111)
T COG2151 11 KVTLEDILEALKTVIDPEI-GID---IVDLGLVYEVDIDDVDGLVKVKMTLTSPGCP--LAEVIADQVEAALEEIPGVED 84 (111)
T ss_pred hhhHHHHHHHhhcCCCccc-cee---eEeeccEEEEEEecCCceEEEEEecCCCCCC--ccHHHHHHHHHHHHhcCCcce
Confidence 44566777766432 1332 222 44444443332 233332 3344 357899999999999999999
Q ss_pred EEEEEeeCCCCCC
Q 017950 344 AFVHVDFNATHQL 356 (363)
Q Consensus 344 v~Vhid~~~~~~~ 356 (363)
+.|.+..++.-.|
T Consensus 85 v~V~l~~~p~Wt~ 97 (111)
T COG2151 85 VEVELTLSPPWTP 97 (111)
T ss_pred EEEEEEEcCCCch
Confidence 9999888764443
No 51
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.25 E-value=37 Score=26.87 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCccEEEEEEeeCCC
Q 017950 320 SLSEAHNIGESLQEKLEQLPEVERAFVHVDFNAT 353 (363)
Q Consensus 320 ~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~~~ 353 (363)
+..-+..+...|++.+...|.|+++-|++|++..
T Consensus 35 s~~~a~~le~aI~esi~~QP~v~daeV~Id~~~~ 68 (116)
T COG2098 35 SPGTAESLEKAIEESIKVQPFVEDAEVKIDRDKE 68 (116)
T ss_pred CccchHHHHHHHHHHHhcCCceeeEEEEeccccc
Confidence 3445667778888888888999999999999843
No 52
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=43.86 E-value=2.3e+02 Score=25.00 Aligned_cols=16 Identities=0% Similarity=-0.012 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 017950 190 SVTVVKLALMMYCRRF 205 (363)
Q Consensus 190 ~~~~v~~~l~~~~~~~ 205 (363)
++++.-.+.+++.||.
T Consensus 186 ig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 186 IGVIAFALRFYLKKKY 201 (206)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333333344444444
No 53
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=43.72 E-value=1.5e+02 Score=22.79 Aligned_cols=24 Identities=33% Similarity=0.474 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCC
Q 017950 113 LLSGFILWFTAYAMKKPNQYQYPI 136 (363)
Q Consensus 113 ~~s~~i~l~~~~~~~r~~~~~~P~ 136 (363)
+...+...++...+.+....+||+
T Consensus 81 l~~~v~~I~~~~~a~~g~~~~~P~ 104 (109)
T PF09685_consen 81 LLSLVLSIIGAIKANKGEPYRYPF 104 (109)
T ss_pred HHHHHHHHHHHHHHHCCCeeecCe
Confidence 444555566666777777788886
No 54
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=43.34 E-value=1.8e+02 Score=32.60 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHhcCCCccccceeEEEEecCe-EEEEEEEEeCCCCCHHHH-HHHHHHHHHHHhcCC-Ccc
Q 017950 273 APAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQ-YFVEADVVLPAEMSLSEA-HNIGESLQEKLEQLP-EVE 342 (363)
Q Consensus 273 ~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~-~~v~v~I~~~~~~~l~~~-h~i~~~l~~~l~~~~-~v~ 342 (363)
.|+|+.+.|.+-+++...+|.++++++......+ -.+.++... +.+..++ .++.+++.+.-.++| +++
T Consensus 53 sp~~vE~~Vt~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~f~~--g~d~~~a~~~V~~~i~~~~~~LP~~~~ 123 (1049)
T PRK15127 53 DAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFES--GTDADIAQVQVQNKLQLAMPLLPQEVQ 123 (1049)
T ss_pred CHHHHHHHhhHHHHHHhcCCCCceEEEEEecCCceEEEEEEEEC--CCChHHHHHHHHHHHHHHHhhCCCccc
Confidence 4667788899989888888888888888775332 344444443 3333333 355566654434577 443
No 55
>PRK09577 multidrug efflux protein; Reviewed
Probab=43.05 E-value=2.1e+02 Score=32.13 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHH-HHHHHHHHHHHhcCC
Q 017950 273 APAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEA-HNIGESLQEKLEQLP 339 (363)
Q Consensus 273 ~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~-h~i~~~l~~~l~~~~ 339 (363)
.|+++.+.|.+-+++...++.++++++....-.. ..+.+.++.+.+.+.+ .++.+++.+.-.++|
T Consensus 53 sp~~VE~~Vt~plE~~L~~v~gv~~i~S~S~~G~--s~I~v~f~~g~d~~~a~~~V~~~v~~~~~~LP 118 (1032)
T PRK09577 53 SAQVVEESVTALIEREMNGAPGLLYTSATSSAGQ--ASLSLTFKQGVNADLAAVEVQNRLKTVEARLP 118 (1032)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCe--EEEEEEEECCCChHHHHHHHHHHHHHHHHhCC
Confidence 3566677788888887788888888887765443 4455555555554433 345555554334577
No 56
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=42.57 E-value=2.1e+02 Score=32.18 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHhcCCCccccceeEEEEecCe-EEEEEEEEeCCCCCHHH-HHHHHHHHHHHHhcCC-Ccc
Q 017950 273 APAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQ-YFVEADVVLPAEMSLSE-AHNIGESLQEKLEQLP-EVE 342 (363)
Q Consensus 273 ~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~-~~v~v~I~~~~~~~l~~-~h~i~~~l~~~l~~~~-~v~ 342 (363)
.|+++.+.|.+-+++...++.++++++.....++ -.+.++.. .+.+.++ ..++.+++++.-.++| +++
T Consensus 53 sp~~vE~~Vt~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~--~g~d~~~a~~~V~~~v~~~~~~LP~~v~ 123 (1037)
T PRK10555 53 SAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFK--AGTDPDEAVQQVQNQLQSAMRKLPQAVQ 123 (1037)
T ss_pred CHHHHHHHHhHHHHHHhcCCCCceEEEEEecCCCeEEEEEEEE--CCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 3566777888888888888888888888765233 44444444 3333333 3445556655444577 543
No 57
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=42.40 E-value=3e+02 Score=25.97 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=41.9
Q ss_pred HHHHHHHhCCHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017950 198 LMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFY------WWIDPIGAILIALYTMGNWGNTVMENVW 266 (363)
Q Consensus 198 l~~~~~~~~s~~l~a~~~~~~~D~~~~~~~v~~~~~~~~~~------~~~D~i~aiii~~~i~~~~~~~~~e~~~ 266 (363)
...|...+...+--+.......|.+.+.=+++.+..+..++ .+-=-.|++.++++++..-.+...|+.+
T Consensus 94 aaIYL~EYa~~~~~t~~ir~~i~~La~vPSIV~GLFg~~~fV~~~g~~~S~laGaLaLall~LP~iirtteeaL~ 168 (292)
T COG0581 94 AGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGLFGLGFFVVTLGFGFSALAGALALALLMLPVVIRTTEEALR 168 (292)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444322233334445677777654555555555431 2444568888999999888888888776
No 58
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=41.57 E-value=3.7e+02 Score=26.80 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhHHHhhHHHH
Q 017950 143 PVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVI 222 (363)
Q Consensus 143 ~l~~li~~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~~~s~~l~a~~~~~~~D~~ 222 (363)
++--.++-.+|.+.-+.+..|-=++++.++-.+ +......++.++.+.++...+|..... +++..+..+.-.-+|+.
T Consensus 62 sl~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~--~r~a~lPiiAAlGGmivPAlIy~~~n~-~~~~~~GWgIPmATDIA 138 (423)
T PRK14855 62 SLEHWVNDGLMAVFFLLVGLEIKRELLIGELSS--PRQAALAVVAALGGMLVPAALYTALNA-GGPGASGWGVPMATDIA 138 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC--hHHHHHHHHHHHhchHHHHHHHheeec-CCCccCccccccHHHHH
Confidence 455566777777777777777777787766432 233344566677778888888877643 33445566666677888
Q ss_pred HHHHHHH
Q 017950 223 TNSIGLA 229 (363)
Q Consensus 223 ~~~~~v~ 229 (363)
. ++|++
T Consensus 139 F-AlgvL 144 (423)
T PRK14855 139 F-ALGVL 144 (423)
T ss_pred H-HHHHH
Confidence 7 46664
No 59
>PRK14634 hypothetical protein; Provisional
Probab=40.91 E-value=2e+02 Score=24.33 Aligned_cols=59 Identities=8% Similarity=0.034 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHhcC
Q 017950 277 YLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAE--MSLSEAHNIGESLQEKLEQL 338 (363)
Q Consensus 277 ~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~--~~l~~~h~i~~~l~~~l~~~ 338 (363)
+.+.+...+.. .| ..+.++.....|....+.|.|.=+.. .+++++.++++.+...|...
T Consensus 9 i~~l~~~~~~~--~G-~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~ 69 (155)
T PRK14634 9 LETLASATAAD--KG-FELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEAS 69 (155)
T ss_pred HHHHHHHHHHH--cC-CEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhccc
Confidence 33444444432 23 35778888888888888888877666 99999999999999999754
No 60
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=40.44 E-value=1.6e+02 Score=22.37 Aligned_cols=64 Identities=20% Similarity=0.097 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCCccccceeEEEEecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEE
Q 017950 278 LAKLTYLIWNHHEEIKYIETVRAYNFGCQ-YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVH 347 (363)
Q Consensus 278 ~~~I~~~~~~~~~~V~~v~~v~~~~~G~~-~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vh 347 (363)
++++.+.+.+..+.-..+.+.+.--++-+ ..+.+.+.++.+. --.+.+++.+++.++|+.+.|.
T Consensus 19 le~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~------g~td~lee~i~~ve~V~svev~ 83 (88)
T TIGR00489 19 LEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDAE------GGTEAAEESLSGIEGVESVEVT 83 (88)
T ss_pred HHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecCC------cChHHHHHHHhcCCCccEEEEE
Confidence 44555555444555567788888888888 6788888886542 1137788889888899887653
No 61
>PRK14640 hypothetical protein; Provisional
Probab=39.90 E-value=2.3e+02 Score=23.86 Aligned_cols=46 Identities=4% Similarity=-0.028 Sum_probs=38.2
Q ss_pred cccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 017950 293 KYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQL 338 (363)
Q Consensus 293 ~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~ 338 (363)
..+.++.....|....+.+.|.=+...+++++..+++.+...|...
T Consensus 21 ~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~~ 66 (152)
T PRK14640 21 FELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVE 66 (152)
T ss_pred CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 3577888888888877888887666799999999999999999753
No 62
>COG1302 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.31 E-value=2.2e+02 Score=23.47 Aligned_cols=86 Identities=21% Similarity=0.239 Sum_probs=53.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCccccceeEEEEe-cCeEEEEEEEEeCCCCCH-HHHHHHHHHHHHHHhc
Q 017950 260 TVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNF-GCQYFVEADVVLPAEMSL-SEAHNIGESLQEKLEQ 337 (363)
Q Consensus 260 ~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~-G~~~~v~v~I~~~~~~~l-~~~h~i~~~l~~~l~~ 337 (363)
+..+.+..+.|-.. .+.+.+.+.+ +. +++ =+.+.+..- +..+.+++++.+.-..++ +-++.|.+.++..++.
T Consensus 25 ~a~~ev~Gv~~m~~--~~~~~~~e~l-~~-~n~--~kGV~Ve~~~~~~v~VDvyi~v~YGv~IpeVa~~Iq~~V~~~v~~ 98 (131)
T COG1302 25 IAAEEVEGVVGMAG--GFKDGLTEKL-GK-ENV--TKGVKVEVGEDQSVAVDVYIIVEYGVKIPEVAENIQERVKEEVEN 98 (131)
T ss_pred HHHHHcCCeeeccc--hhhhhHHHHh-Cc-ccc--CCCeEEEecCCCcEEEEEEEEEecCCchHHHHHHHHHHHHHHHHH
Confidence 34455666665322 2555566555 21 222 134566663 444999999999887664 4677788888888875
Q ss_pred CC--CccEEEEEEeeC
Q 017950 338 LP--EVERAFVHVDFN 351 (363)
Q Consensus 338 ~~--~v~~v~Vhid~~ 351 (363)
.- .+..+.||+.--
T Consensus 99 mtgl~v~~VNV~V~gV 114 (131)
T COG1302 99 MTGLKVVEVNVHVVGV 114 (131)
T ss_pred hhCCceEEEEEEEEEe
Confidence 33 566788887644
No 63
>PRK00341 hypothetical protein; Provisional
Probab=39.23 E-value=1.7e+02 Score=22.30 Aligned_cols=64 Identities=13% Similarity=0.172 Sum_probs=40.6
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCccccceeEEEEecCe--EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCcc
Q 017950 269 IGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQ--YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVE 342 (363)
Q Consensus 269 ~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~--~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~ 342 (363)
+|. +.+++.+.|.+++.++. .. ....+..+....+ ..+.+.+.+.. .+-.+.+-+.|.+.|.|.
T Consensus 23 iG~-~~~~~~~~V~~iv~~~~-~~-~~~~~~~k~Ss~GkY~S~tv~i~~~s-------~~q~~~iy~~L~~~~~V~ 88 (91)
T PRK00341 23 IGD-TGVGFKDLVIEILQKHA-DV-DLSTLAERQSSNGKYTTVQLHIVATD-------EDQLQDINSALRATGRVH 88 (91)
T ss_pred EEc-CchhHHHHHHHHHHHhC-CC-cccceeeccCCCCEEEEEEEEEEECC-------HHHHHHHHHHHhhCCCEE
Confidence 453 47788899999997665 32 2445555555444 55666666543 234577788888888874
No 64
>PLN02601 beta-carotene hydroxylase
Probab=38.17 E-value=2.3e+02 Score=26.39 Aligned_cols=13 Identities=15% Similarity=0.008 Sum_probs=8.0
Q ss_pred HhhHHHHHHHHHH
Q 017950 216 DHFFDVITNSIGL 228 (363)
Q Consensus 216 ~~~~D~~~~~~~v 228 (363)
.-+||++.-.+++
T Consensus 178 FE~NDlFaVifAv 190 (303)
T PLN02601 178 FELNDVFAIVNAV 190 (303)
T ss_pred cccccchhhhhHH
Confidence 3479988743444
No 65
>PRK14647 hypothetical protein; Provisional
Probab=38.12 E-value=2.5e+02 Score=23.80 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=38.4
Q ss_pred cccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 017950 293 KYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQL 338 (363)
Q Consensus 293 ~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~ 338 (363)
..+.++.....|....+.+.|.=+...+++++..+++.+...|...
T Consensus 23 ~~L~dv~~~~~~~~~~lrV~ID~~~gvslddC~~vSr~is~~LD~~ 68 (159)
T PRK14647 23 LELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDVE 68 (159)
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHccc
Confidence 3577888888888777888887777899999999999999999743
No 66
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=36.24 E-value=3.8e+02 Score=25.37 Aligned_cols=70 Identities=11% Similarity=0.167 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCcccccee---------EEEEecC---------e-EEEEEEEEeCCCCCHHHHHHHHHH
Q 017950 270 GRTAPAEYLAKLTYLIWNHHEEIKYIETV---------RAYNFGC---------Q-YFVEADVVLPAEMSLSEAHNIGES 330 (363)
Q Consensus 270 g~s~~~e~~~~I~~~~~~~~~~V~~v~~v---------~~~~~G~---------~-~~v~v~I~~~~~~~l~~~h~i~~~ 330 (363)
+...+++..+++.+.+. ..|+|.+++-+ +- ..|. + +--.+.|.++++. +..+..++
T Consensus 73 ~~~~~~~~~~~l~~~l~-~~~~V~~v~~iskeeAl~~l~~-~~g~~~~l~~l~~nPLP~si~V~l~~~~---~~~~~~~~ 147 (309)
T TIGR00439 73 EKALAQSDADTVVSLLT-RDKGVENINYISREDGLAEFQS-WSGFGNLLSMLDGNPLPAVFIVTPDPAF---TPAEMQAI 147 (309)
T ss_pred CCCCCHHHHHHHHHHHh-CCCCccEEEEECHHHHHHHHHH-hcCCchhhhhcccCCCCCeEEEEeCCCC---ChHHHHHH
Confidence 44567777888888885 58998876543 21 1222 1 2222444444332 23346677
Q ss_pred HHHHHhcCCCccEE
Q 017950 331 LQEKLEQLPEVERA 344 (363)
Q Consensus 331 l~~~l~~~~~v~~v 344 (363)
+++++++.|+|+++
T Consensus 148 l~~~l~~~~gV~~v 161 (309)
T TIGR00439 148 LRDNITKIPGVEEV 161 (309)
T ss_pred HHHHHhcCCCCCcc
Confidence 88888889999875
No 67
>PRK09579 multidrug efflux protein; Reviewed
Probab=35.79 E-value=2.7e+02 Score=31.21 Aligned_cols=66 Identities=9% Similarity=0.000 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHH-HHHHHHHHHHHHhcCCC
Q 017950 273 APAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSE-AHNIGESLQEKLEQLPE 340 (363)
Q Consensus 273 ~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~-~h~i~~~l~~~l~~~~~ 340 (363)
.|+++.+.|.+-+++...++.++++++....-..-.+.+ +++.+.+.++ ..++.+++.+.-.++|+
T Consensus 55 spe~vE~~Vt~plE~~L~~v~gi~~i~S~S~~G~s~I~v--~f~~g~d~~~a~~~v~~~v~~v~~~LP~ 121 (1017)
T PRK09579 55 NAETIQGYITQPLQQSLASAEGIDYMTSVSRQNFSIISI--YARIGADSDRLFTELLAKANEVKNQLPQ 121 (1017)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEE--EEECCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 355667778888888888888888888776544344444 4444444443 34455555443334663
No 68
>PRK14637 hypothetical protein; Provisional
Probab=35.78 E-value=2.5e+02 Score=23.65 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEe
Q 017950 277 YLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVD 349 (363)
Q Consensus 277 ~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid 349 (363)
..+.+...+.+ -+ ..+.++.....|....+.+.|.=+..+++.++.++++.|-..|+.......-+.++-
T Consensus 10 ~~~~v~p~~~~--~g-~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVS 79 (151)
T PRK14637 10 YFSECEPVVEG--LG-CKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEALGGVRDVFLEVS 79 (151)
T ss_pred HHHHHHHHHHh--cC-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccccCcEEEEe
Confidence 34556666643 23 467788888888888888888777779999999999999998875322333344443
No 69
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=35.64 E-value=2.7e+02 Score=31.23 Aligned_cols=65 Identities=8% Similarity=0.081 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHH-HHHHHHHHHHHhcCC
Q 017950 273 APAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEA-HNIGESLQEKLEQLP 339 (363)
Q Consensus 273 ~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~-h~i~~~l~~~l~~~~ 339 (363)
.|++..+.|.+-+++...++.++++++.........+.+....+. +..++ .++.+++.+...++|
T Consensus 55 s~~~ve~~vt~piE~~l~~i~gv~~i~S~s~~G~s~i~l~f~~~~--d~~~a~~~v~~~v~~~~~~LP 120 (1025)
T PRK10614 55 SPETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILQFDFDR--DINGAARDVQAAINAAQSLLP 120 (1025)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCC--ChHHHHHHHHHHHHHHHhhCC
Confidence 355667778787877777888888888766544455555554444 33333 445555544333466
No 70
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.43 E-value=2.8e+02 Score=23.52 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=43.9
Q ss_pred cccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCcc-EEEEEEe
Q 017950 293 KYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVE-RAFVHVD 349 (363)
Q Consensus 293 ~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~-~v~Vhid 349 (363)
.++.++.....|++..+.+.|.=+..++++++.++++.+...|.....+. .-+.++-
T Consensus 23 ~ELv~ve~~~~~~~~~lrI~id~~g~v~lddC~~vSr~is~~LD~edpi~~~Y~LEVS 80 (153)
T COG0779 23 FELVDVEFVKEGRDSVLRIYIDKEGGVTLDDCADVSRAISALLDVEDPIEGAYFLEVS 80 (153)
T ss_pred cEEEEEEEEEcCCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHhccCCcccccEEEEee
Confidence 35678888888988888888887788999999999999999998433333 3334443
No 71
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=34.26 E-value=1.9e+02 Score=21.30 Aligned_cols=63 Identities=10% Similarity=0.114 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 017950 274 PAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFV 346 (363)
Q Consensus 274 ~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~V 346 (363)
.|+.++++.....+ .| -.|+.+.+-.....-...+.+++.. ++..+.+.+.|+++++|.++.+
T Consensus 13 ~pGVL~Ri~~lf~r--RG-fnI~sl~v~~t~~~~~sriti~v~~-------~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 13 RPEVLERVLRVVRH--RG-FQVCSMNMTQNTDAQNINIELTVAS-------ERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CccHHHHHHHHHhc--CC-eeeeeEEeeecCCCCEEEEEEEECC-------CchHHHHHHHHhcCcCeEEEEE
Confidence 46788999998853 44 3677777766644445556666643 2346788888999999977654
No 72
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=34.16 E-value=4.6e+02 Score=25.75 Aligned_cols=86 Identities=16% Similarity=0.122 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhHHHhhHHHHH
Q 017950 144 VGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVIT 223 (363)
Q Consensus 144 l~~li~~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~~~s~~l~a~~~~~~~D~~~ 223 (363)
+---++-.+|.+.-+.+..|-=+++..++-.+ +......+..++.+.++....|...... ....+..+.-.-+|+..
T Consensus 56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~--~r~a~lP~~AAlGGmivPAlIy~~~n~~-~~~~~GW~IP~ATDIAF 132 (383)
T PRK14854 56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSK--PSNIITPAIAAFAGLAMPSLIYLSINHD-IKVINGWAIPSATDIAF 132 (383)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHhchHHHHHHHHhhccC-CcccCccccccHHHHHH
Confidence 33345555565555556666667777666432 1233445666777788888888776532 33356666666778887
Q ss_pred HHHHHHHHHHH
Q 017950 224 NSIGLATALLA 234 (363)
Q Consensus 224 ~~~~v~~~~~~ 234 (363)
++|++ +.++
T Consensus 133 -AlgvL-allG 141 (383)
T PRK14854 133 -TLGIL-ALLG 141 (383)
T ss_pred -HHHHH-HHhc
Confidence 46663 4443
No 73
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=33.97 E-value=1.7e+02 Score=21.88 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 017950 272 TAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFV 346 (363)
Q Consensus 272 s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~V 346 (363)
...||.++++.+..+ | .|- .+-.++.-..-..-.+.+++.++.+-|+ +-+...|+++++|..+.+
T Consensus 11 r~~pe~leRVLrvtr-h-RGF-~vcamnmt~~~da~~~nie~tV~s~R~~-------~lL~~QLeKl~Dv~~V~i 75 (86)
T COG3978 11 RFNPETLERVLRVTR-H-RGF-RVCAMNMTAAVDAGNANIELTVDSDRSV-------DLLTSQLEKLYDVAHVEI 75 (86)
T ss_pred cCChHHHHHHHHHhh-h-cCe-EEEEeecccccccccceEEEEEcCCCCh-------HHHHHHHHHHccceeEEE
Confidence 457899999999885 3 332 1222222222112234555666666553 456777888888876544
No 74
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=33.88 E-value=2.1e+02 Score=21.75 Aligned_cols=64 Identities=20% Similarity=0.147 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCCccccceeEEEEecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEE
Q 017950 278 LAKLTYLIWNHHEEIKYIETVRAYNFGCQ-YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVH 347 (363)
Q Consensus 278 ~~~I~~~~~~~~~~V~~v~~v~~~~~G~~-~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vh 347 (363)
++++.+.+.+..+.-..+...+.--+|-+ ..+.+.++++.+- --.+.+++.+++.++|+.+.|.
T Consensus 19 l~~L~~~ik~~~~~g~~~~~~~~ePIaFGLkaL~i~~vv~D~~------~~td~lee~i~~~e~Vqsvei~ 83 (88)
T PRK00435 19 LDELKEKIKEVLPEGYKINGIEEEPIAFGLKALKLYVIMPDEE------GGTEPVEEAFANVEGVESVEVE 83 (88)
T ss_pred HHHHHHHHHHhCcCCcEEeEeEEEEeeccceeEEEEEEEEcCC------cCcHHHHHHHhccCCCcEEEEE
Confidence 44444444444455566778888888888 6778888775541 1137788888888899887654
No 75
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=33.74 E-value=1.4e+02 Score=29.08 Aligned_cols=70 Identities=20% Similarity=0.166 Sum_probs=59.2
Q ss_pred HHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 017950 100 LAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPE 175 (363)
Q Consensus 100 ~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~~~~~~~~i~~esi~~l~~~~~~~ 175 (363)
..+-|--+|-+.|++=+.-.+++....+-.| +|.-.+++-.++++++-+...+.++.+.+..|+++.+.+
T Consensus 224 ~nvraAyiHVlGDliQSvGV~iaa~Ii~f~P------~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~ 293 (379)
T KOG1482|consen 224 LNVRAAFVHVLGDLIQSVGVLIAALIIYFKP------EYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPRN 293 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhheeEEecc------cceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCcc
Confidence 7888999999999998887777766655444 455589999999999999999999999999999887654
No 76
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=33.53 E-value=2.3e+02 Score=23.78 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=29.6
Q ss_pred cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEeeCC
Q 017950 304 GCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNA 352 (363)
Q Consensus 304 G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~~ 352 (363)
|..+.|.+.+..+. .+ ....+.+.+++.|++. ++..+.|.+...+
T Consensus 24 gd~V~VtIt~Ty~g-cp--a~e~L~~~I~~aL~~~-Gv~~V~V~i~~~p 68 (146)
T TIGR02159 24 GGGVVVKFTPTYSG-CP--ALEVIRQDIRDAVRAL-GVEVVEVSTSLDP 68 (146)
T ss_pred CCEEEEEEEeCCCC-Cc--hHHHHHHHHHHHHHhc-CCCeEEEeEeeCC
Confidence 45455554444332 23 4457889999999876 8888888877665
No 77
>PRK14632 hypothetical protein; Provisional
Probab=33.05 E-value=2.6e+02 Score=24.12 Aligned_cols=45 Identities=13% Similarity=0.078 Sum_probs=35.2
Q ss_pred cccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 017950 293 KYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQL 338 (363)
Q Consensus 293 ~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~ 338 (363)
..+.++.... |....+.+.|.=+..++++++..+++.+...|...
T Consensus 23 ~eLvdve~~~-~~~~~lrV~ID~~~GV~ldDC~~vSr~is~~LD~~ 67 (172)
T PRK14632 23 LELWGIELSY-GGRTVVRLFVDGPEGVTIDQCAEVSRHVGLALEVE 67 (172)
T ss_pred CEEEEEEEEe-CCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 3566777554 55577888887667799999999999999999743
No 78
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=32.74 E-value=41 Score=22.40 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=15.2
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 017950 238 YWWIDPIGAILIALYTMGNW 257 (363)
Q Consensus 238 ~~~~D~i~aiii~~~i~~~~ 257 (363)
..++||+.|+++++.-.+.-
T Consensus 4 sr~lDP~~av~iG~~ayyl~ 23 (47)
T PF11654_consen 4 SRFLDPLFAVFIGTSAYYLY 23 (47)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 46899999999887655443
No 79
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=32.64 E-value=72 Score=24.76 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=16.8
Q ss_pred cchhHhhhHHHHHHHHHHHH
Q 017950 137 GKNRMQPVGIVVFASIMATL 156 (363)
Q Consensus 137 G~~r~E~l~~li~~~~~~~~ 156 (363)
||+|.|....++.+++..+.
T Consensus 78 GYGr~E~~iG~iiA~l~~~l 97 (99)
T PF09877_consen 78 GYGRIETVIGLIIALLIYLL 97 (99)
T ss_pred CCCeehhhhhHHHHHHHHHH
Confidence 99999999998888876654
No 80
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=32.18 E-value=5e+02 Score=25.48 Aligned_cols=103 Identities=20% Similarity=0.197 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhHHHhhHHHH
Q 017950 143 PVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVI 222 (363)
Q Consensus 143 ~l~~li~~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~~~s~~l~a~~~~~~~D~~ 222 (363)
++--.++-.+|.+.-+.+..|-=+++..++-.+ +......+..++.+.++....|......+....+..+.-.-+|+.
T Consensus 51 ~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~--~~~a~lP~~aA~GGm~vPa~iy~~~n~~~~~~~~GW~IP~ATDiA 128 (373)
T TIGR00773 51 SLLHWINDGLMAVFFLLIGLEVKRELLEGALSS--LRQAIFPVIAAIGGMIAPALIYLAFNANDPITREGWAIPAATDIA 128 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHhchHHHHHHHhheecCCCcccCccccccHHHHH
Confidence 455556666676666667777777777766432 233344566677778888888777654222336666777778888
Q ss_pred HHHHHHHHHHHHHHh----------hhhhhHHHHHHH
Q 017950 223 TNSIGLATALLAIKF----------YWWIDPIGAILI 249 (363)
Q Consensus 223 ~~~~~v~~~~~~~~~----------~~~~D~i~aiii 249 (363)
. ++|+ .+.++... --.+|-++++++
T Consensus 129 F-algv-lallG~~vP~~lr~FLl~LAIvDDlgaI~v 163 (373)
T TIGR00773 129 F-ALGV-MALLGKRVPLALKIFLLALAIIDDLGAIVI 163 (373)
T ss_pred H-HHHH-HHHhcCCCCHHHHHHHHHHHHHHHHhhHhh
Confidence 8 4776 34444332 136677776654
No 81
>COG3062 NapD Uncharacterized protein involved in formation of periplasmic nitrate reductase [Inorganic ion transport and metabolism]
Probab=31.22 E-value=2.5e+02 Score=21.66 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEE---EEEEe
Q 017950 273 APAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERA---FVHVD 349 (363)
Q Consensus 273 ~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v---~Vhid 349 (363)
+-|+.+..|...+.. .|+ +.++..++. ..+-|++..+ +.+.+.+.+ +.++++|+|-.+ |-|.|
T Consensus 15 ~~pe~l~av~~~L~~-ip~------~EV~~~d~~--GKlVVVie~~----~~~~l~~ti-e~i~nl~gVlav~lVyhqqd 80 (94)
T COG3062 15 AKPERLSAVKTALLA-IPG------CEVYGEDAE--GKLVVVIEAE----DSETLLETI-ESIRNLPGVLAVSLVYHQQD 80 (94)
T ss_pred cCHHHHHHHHHHHhc-CCC------cEeeccCCC--ceEEEEEEcC----chHHHHHHH-HHHhcCCceeEEEEEEEEEe
Confidence 356778888877753 454 455555554 5666777665 356677777 457788888764 44555
Q ss_pred eCCCCCCCC
Q 017950 350 FNATHQLEH 358 (363)
Q Consensus 350 ~~~~~~~~h 358 (363)
...+..|.|
T Consensus 81 ~q~e~~~~~ 89 (94)
T COG3062 81 EQGEEGPAI 89 (94)
T ss_pred ccCcccccc
Confidence 555444444
No 82
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=30.82 E-value=3.7e+02 Score=23.56 Aligned_cols=80 Identities=10% Similarity=0.066 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcCCCccccc--eeEEEEecCeEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHh-cCCCccEEEEEEe
Q 017950 275 AEYLAKLTYLIWNHHEEIKYIE--TVRAYNFGCQYFVEADVVLPAE--MSLSEAHNIGESLQEKLE-QLPEVERAFVHVD 349 (363)
Q Consensus 275 ~e~~~~I~~~~~~~~~~V~~v~--~v~~~~~G~~~~v~v~I~~~~~--~~l~~~h~i~~~l~~~l~-~~~~v~~v~Vhid 349 (363)
++..++|.+++.+...-...-| ++.+...-.+-. +.|.+... --..-.-.+.+.+|+.|+ ..|++.+|.---|
T Consensus 104 ~~~~~~i~~~l~~~irP~l~~dGGdielv~v~~~~~--v~v~l~GaC~gC~~s~~Tl~~~ie~~l~~~~p~v~~V~~~~~ 181 (190)
T TIGR03341 104 APLEERINYVLQSEINPQLASHGGKVTLVEITDDGV--AVLQFGGGCNGCSMVDVTLKDGVEKTLLERFPELKGVRDATD 181 (190)
T ss_pred hHHHHHHHHHHHhccCHHHHhcCCceEEEEEcCCCE--EEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCcceEEEecC
Confidence 3467888888853332222222 455555422112 23333222 112234556788999996 5899987766666
Q ss_pred eCCCCCC
Q 017950 350 FNATHQL 356 (363)
Q Consensus 350 ~~~~~~~ 356 (363)
.....+|
T Consensus 182 ~~~~~~~ 188 (190)
T TIGR03341 182 HTRGEHS 188 (190)
T ss_pred ccccCCC
Confidence 5555544
No 83
>PRK00106 hypothetical protein; Provisional
Probab=30.13 E-value=1.2e+02 Score=31.14 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHh---cCCCccEEEEEE
Q 017950 278 LAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAE-MSLSEAHNIGESLQEKLE---QLPEVERAFVHV 348 (363)
Q Consensus 278 ~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~-~~l~~~h~i~~~l~~~l~---~~~~v~~v~Vhi 348 (363)
++++.+++. ..|||.+. .+.+.|+.+.| .|+|+ .+=.++..++.+|.++|+ .+||--.|||-=
T Consensus 460 l~~lE~ia~-~~~gV~~~---yaiqaGREiRv----iV~p~~v~D~~~~~la~~ia~~Ie~~~~yPG~ikvtviR 526 (535)
T PRK00106 460 LRDLEEIAN-SFDGVQNS---FALQAGREIRI----MVQPEKISDDQVTILAHKVREKIENNLDYPGNIKVTVIR 526 (535)
T ss_pred HHHHHHHHh-cCCcHHHH---HHHhcCCeEEE----EecCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEEe
Confidence 567778885 46776554 44556886554 44444 666788888888888886 367766666643
No 84
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=30.11 E-value=3.3e+02 Score=22.81 Aligned_cols=59 Identities=7% Similarity=0.021 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 017950 277 YLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQL 338 (363)
Q Consensus 277 ~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~ 338 (363)
+.+.+...+.. -| ..+.++.....|++-.+.+.|.-+...+++++.++++.+...|+..
T Consensus 9 i~~~~~~~~~~--~g-~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~ 67 (154)
T PRK00092 9 LTELIEPVVEA--LG-YELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVE 67 (154)
T ss_pred HHHHHHHHHHH--CC-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 33444555532 23 3578888888888888888887777799999999999999999743
No 85
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=29.74 E-value=2e+02 Score=20.17 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHH
Q 017950 145 GIVVFASIMATLGLQ---ILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVV 194 (363)
Q Consensus 145 ~~li~~~~~~~~~~~---i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v 194 (363)
+-++.|+.++..+.+ .+.+.+.+.+++++++ ...|.++...++.++
T Consensus 6 ~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~----~t~~~ligG~va~iv 54 (59)
T PF11381_consen 6 ALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPTD----KTIWYLIGGAVAVIV 54 (59)
T ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCc----hhHHHHHhHHHHHHH
Confidence 445666666666665 3555677888777642 234444444444443
No 86
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=29.56 E-value=1.7e+02 Score=25.34 Aligned_cols=55 Identities=20% Similarity=0.373 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CCCccEEEEEE
Q 017950 270 GRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQ-LPEVERAFVHV 348 (363)
Q Consensus 270 g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~-~~~v~~v~Vhi 348 (363)
|...+++.+++|.....+ .+| .|..|||.+ +++|++.|.+ +|++.|+|+.-
T Consensus 30 Gs~i~~~~i~~i~~~~~~--rgV-------------------IIfTDpD~~-------GekIRk~i~~~vp~~khafi~~ 81 (174)
T TIGR00334 30 GSALKDETINLIKKAQKK--QGV-------------------IILTDPDFP-------GEKIRKKIEQHLPGYENCFIPK 81 (174)
T ss_pred CCccCHHHHHHHHHHhhc--CCE-------------------EEEeCCCCc-------hHHHHHHHHHHCCCCeEEeeeH
Confidence 444577778888776632 333 367788874 6788888864 89999999987
Q ss_pred eeCC
Q 017950 349 DFNA 352 (363)
Q Consensus 349 d~~~ 352 (363)
+...
T Consensus 82 ~~a~ 85 (174)
T TIGR00334 82 HLAK 85 (174)
T ss_pred HhcC
Confidence 7654
No 87
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.49 E-value=2e+02 Score=20.12 Aligned_cols=63 Identities=16% Similarity=0.055 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCccccceeEEEEec-CeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 017950 275 AEYLAKLTYLIWNHHEEIKYIETVRAYNFG-CQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFV 346 (363)
Q Consensus 275 ~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G-~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~V 346 (363)
+..+.+|...+.+. + ..+..+...... ....+.+.+.+.. ..+-.+++-++|+++|+|.+|.+
T Consensus 11 ~g~l~~I~~~la~~--~-inI~~i~~~~~~~~~~~i~~~v~v~~------~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 11 PGVLSKVLNTIAQV--R-GNVLTINQNIPIHGRANVTISIDTST------MNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred CchHHHHHHHHHHc--C-CCEEEEEeCCCCCCeEEEEEEEEcCc------hHHHHHHHHHHHhcCCCeEEEEE
Confidence 46788888888653 2 245555432211 2244555554432 22345677788888999988754
No 88
>PRK14639 hypothetical protein; Provisional
Probab=29.23 E-value=2.2e+02 Score=23.68 Aligned_cols=46 Identities=7% Similarity=0.003 Sum_probs=38.4
Q ss_pred cccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 017950 293 KYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQL 338 (363)
Q Consensus 293 ~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~ 338 (363)
..+.++.....|....+.+.|.=+...+++++.++++.|...|...
T Consensus 12 ~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~~ 57 (140)
T PRK14639 12 VSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVE 57 (140)
T ss_pred CEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 3567888877788788888887777799999999999999999743
No 89
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=28.83 E-value=1.8e+02 Score=19.35 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=30.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHhc-C-CCccEEEEEEeeCCC
Q 017950 311 ADVVLPAEMSLSEAHNIGESLQEKLEQ-L-PEVERAFVHVDFNAT 353 (363)
Q Consensus 311 v~I~~~~~~~l~~~h~i~~~l~~~l~~-~-~~v~~v~Vhid~~~~ 353 (363)
++|.+.+..+.++-+++.+.+.+.+.+ + ..-++++|.++....
T Consensus 3 i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~~ 47 (58)
T cd00491 3 VQIYILEGRTDEQKRELIERVTEAVSEILGAPEATIVVIIDEMPK 47 (58)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCc
Confidence 455555566788899999999999964 2 234578888876543
No 90
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=28.57 E-value=2.6e+02 Score=27.48 Aligned_cols=103 Identities=21% Similarity=0.242 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhHHHhhHHHH
Q 017950 143 PVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVI 222 (363)
Q Consensus 143 ~l~~li~~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~~~s~~l~a~~~~~~~D~~ 222 (363)
++--.++-.+|.+.-+.+..|-=+++..++-.+ +......+..++.+.++....|......++...+..+.-.-+|+.
T Consensus 58 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~--~r~a~lPi~AAlGGmivPAliy~~~n~~~~~~~~GWaIP~ATDIA 135 (388)
T PRK09561 58 PLLLWINDGLMAVFFLLIGLEVKRELLEGSLAS--RRQAALPVIAAIGGMLVPALIYLLFNYADPVTREGWAIPAATDIA 135 (388)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhchHHHHHHHhheecCCCcccCccccccHHHHH
Confidence 344456666666666666677777777666432 233344566677778888888777654222335666777778888
Q ss_pred HHHHHHHHHHHHHHh----------hhhhhHHHHHHH
Q 017950 223 TNSIGLATALLAIKF----------YWWIDPIGAILI 249 (363)
Q Consensus 223 ~~~~~v~~~~~~~~~----------~~~~D~i~aiii 249 (363)
. ++|++ +.++... --.+|-++++++
T Consensus 136 F-algvl-allG~rvP~~LrvFLlaLAIvDDlgAI~V 170 (388)
T PRK09561 136 F-ALGVL-ALLGSRVPVALKIFLLALAIIDDLGAIVI 170 (388)
T ss_pred H-HHHHH-HHhcCCCCHHHHHHHHHHHHHHHhhhHhh
Confidence 8 47775 4444332 135677666654
No 91
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=28.13 E-value=1.9e+02 Score=29.65 Aligned_cols=64 Identities=22% Similarity=0.234 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh---cCCCccEEEEEE
Q 017950 278 LAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLE---QLPEVERAFVHV 348 (363)
Q Consensus 278 ~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~---~~~~v~~v~Vhi 348 (363)
++.+..++. ..+||.+ ..+.+.|+.+.|-|. |...+=.++..++.+|.++|+ ++||--.|||-=
T Consensus 439 l~~le~i~~-~~~gv~~---~~aiqaGreirv~v~---~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtvir 505 (514)
T TIGR03319 439 LEKLEEIAN-SFEGVEK---SYAIQAGREIRVMVK---PEKISDDQAVVLARDIAKKIEEELEYPGQIKVTVIR 505 (514)
T ss_pred HHHHHHHHH-hCCCchh---hhhhhcCcEEEEEec---CCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEEe
Confidence 345677774 4666654 445567986554333 334677788888888888886 378776666643
No 92
>PRK14635 hypothetical protein; Provisional
Probab=27.06 E-value=3.9e+02 Score=22.68 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=36.4
Q ss_pred cccceeEEEEecCeEEEEEEEEe----CCCCCHHHHHHHHHHHHHHHhc
Q 017950 293 KYIETVRAYNFGCQYFVEADVVL----PAEMSLSEAHNIGESLQEKLEQ 337 (363)
Q Consensus 293 ~~v~~v~~~~~G~~~~v~v~I~~----~~~~~l~~~h~i~~~l~~~l~~ 337 (363)
..+.++.+...|....+.+.|.= ++..++.++.++++.+...|..
T Consensus 20 ~el~dve~~~~~~~~~lrV~ID~~~~~~~gv~lddC~~vSr~is~~LD~ 68 (162)
T PRK14635 20 VKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELER 68 (162)
T ss_pred CEEEEEEEEecCCCcEEEEEEecCCCCCCCcCHHHHHHHHHHHHHHhCC
Confidence 46778888888888788888764 2359999999999999999974
No 93
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=26.91 E-value=1.8e+02 Score=19.75 Aligned_cols=42 Identities=7% Similarity=0.064 Sum_probs=30.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHhcCCC--ccEEEEEEeeCC
Q 017950 311 ADVVLPAEMSLSEAHNIGESLQEKLEQLPE--VERAFVHVDFNA 352 (363)
Q Consensus 311 v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~--v~~v~Vhid~~~ 352 (363)
++|.+-+..|.++-.++.+.+.+.+.+..+ .++++|-++...
T Consensus 4 i~i~~~~Grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~ 47 (61)
T PRK02220 4 VHIKLIEGRTEEQLKALVKDVTAAVSKNTGAPAEHIHVIINEMS 47 (61)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEeC
Confidence 456666667889999999999999975322 356777776544
No 94
>PRK14638 hypothetical protein; Provisional
Probab=26.73 E-value=3.8e+02 Score=22.45 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=37.0
Q ss_pred cccceeEEEEecCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHhc
Q 017950 293 KYIETVRAYNFGCQYFVEADVVLPAE-MSLSEAHNIGESLQEKLEQ 337 (363)
Q Consensus 293 ~~v~~v~~~~~G~~~~v~v~I~~~~~-~~l~~~h~i~~~l~~~l~~ 337 (363)
..+.++.....|....+.+.|.=+.. ++++++..+++.|...|..
T Consensus 23 ~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~ 68 (150)
T PRK14638 23 LEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDR 68 (150)
T ss_pred CEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhcc
Confidence 45778888888888788888876544 9999999999999999974
No 95
>COG3518 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.60 E-value=76 Score=26.99 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhc-CCCccEEEEEEeeCCCC
Q 017950 321 LSEAHNIGESLQEKLEQ-LPEVERAFVHVDFNATH 354 (363)
Q Consensus 321 l~~~h~i~~~l~~~l~~-~~~v~~v~Vhid~~~~~ 354 (363)
..+.|.|+..|++.|+. .|.+.+|.|++++....
T Consensus 83 ~~~~~~i~r~I~~~Ie~fEPRL~~V~v~~~~~~~~ 117 (157)
T COG3518 83 FRDSHQIARAIRAAIERFEPRLSRVEVQLLPGRGD 117 (157)
T ss_pred cccHHHHHHHHHHHHHHhCchhhheeeeeccCCCC
Confidence 45789999999999997 68999999999988765
No 96
>PRK14633 hypothetical protein; Provisional
Probab=26.26 E-value=3.9e+02 Score=22.39 Aligned_cols=59 Identities=3% Similarity=0.013 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 017950 276 EYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQL 338 (363)
Q Consensus 276 e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~ 338 (363)
++.+.+...+.+ .| ..+.++.....|. ..+.+.|.-+..++++++..+++.|...|+..
T Consensus 5 ~i~~lv~p~~~~--~G-~eL~dve~~~~~~-~~lrV~ID~~~Gv~lddC~~vSr~i~~~LD~~ 63 (150)
T PRK14633 5 DLYEIVEPITAD--LG-YILWGIEVVGSGK-LTIRIFIDHENGVSVDDCQIVSKEISAVFDVE 63 (150)
T ss_pred HHHHHHHHHHHH--CC-CEEEEEEEEeCCC-cEEEEEEeCCCCCCHHHHHHHHHHHHHHhccC
Confidence 334445555532 34 3566777766665 47777777677799999999999999999743
No 97
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=26.17 E-value=1.6e+02 Score=33.14 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=37.1
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEe
Q 017950 307 YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVD 349 (363)
Q Consensus 307 ~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid 349 (363)
-.+.+++.++++.+++++.++.+++++.+++.|+|+.++..+-
T Consensus 568 ~~i~v~~~~p~gt~l~~t~~~~~~ve~~l~~~~~v~~~~~~~G 610 (1040)
T PRK10503 568 GIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVG 610 (1040)
T ss_pred cEEEEEEECCCCCCHHHHHHHHHHHHHHHhhCCCeEEEEEEec
Confidence 3467889999999999999999999999988899988776654
No 98
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=26.17 E-value=1.9e+02 Score=21.45 Aligned_cols=66 Identities=23% Similarity=0.195 Sum_probs=42.9
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCCccccceeEEEE------ecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 017950 268 LIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYN------FGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQ 337 (363)
Q Consensus 268 L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~------~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~ 337 (363)
++|+....+...++...+.++--.|..++.+.-|. ..+.+.+++++..++ . +..++.+++...-++
T Consensus 4 vlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~-~---~~~~lr~~L~~la~e 75 (84)
T cd04871 4 LLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP-A---DLEALRAALLELASE 75 (84)
T ss_pred EEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC-C---CHHHHHHHHHHHhcc
Confidence 57887788999999999987766667776653331 123577888888554 3 445556666543333
No 99
>COG4035 Predicted membrane protein [Function unknown]
Probab=26.10 E-value=59 Score=24.88 Aligned_cols=43 Identities=16% Similarity=0.072 Sum_probs=25.6
Q ss_pred HHhHhhHHHHH-HHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHHHHHH
Q 017950 107 LDSLLDLLSGF-ILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATL 156 (363)
Q Consensus 107 ~~s~~D~~s~~-i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~~~~~ 156 (363)
..++-|.+=.. ..+++...--|| ||+|+|++..-+.++++..-
T Consensus 61 ~~~v~~~~~~ag~flig~v~gMRP-------GYGR~Etv~Gt~LA~l~wL~ 104 (108)
T COG4035 61 MRSVPVPLYMAGCFLIGFVLGMRP-------GYGRVETVVGTFLAVLLWLY 104 (108)
T ss_pred ccCCchHHHHHHHHHHHHhhccCC-------CCceeehhHHHHHHHHHHHh
Confidence 44444444443 345555554454 89999998876666555443
No 100
>PRK12704 phosphodiesterase; Provisional
Probab=25.90 E-value=1.6e+02 Score=30.14 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHh---cCCCccEEEEEE
Q 017950 278 LAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAE-MSLSEAHNIGESLQEKLE---QLPEVERAFVHV 348 (363)
Q Consensus 278 ~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~-~~l~~~h~i~~~l~~~l~---~~~~v~~v~Vhi 348 (363)
++++..++. ..+||.+.+- .+.|+.+. |.|+|+ .+=.++..++.+|.++|+ ++||--.|||-=
T Consensus 445 l~~le~i~~-~~~gv~~~ya---iqaGreir----v~v~~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtvir 511 (520)
T PRK12704 445 LEKLEEIAN-SFEGVEKAYA---IQAGREIR----VIVKPDKVDDLQAVRLARDIAKKIEEELQYPGQIKVTVIR 511 (520)
T ss_pred HHHHHHHHH-hCCcHHHHHH---HhcCceEE----EEeCCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEEe
Confidence 456777775 4677765554 45688554 444444 666788888888888886 378876776643
No 101
>PRK09577 multidrug efflux protein; Reviewed
Probab=25.08 E-value=1.6e+02 Score=32.93 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=34.8
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEE
Q 017950 308 FVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVH 347 (363)
Q Consensus 308 ~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vh 347 (363)
.+.+++.+|+..++++.+++.+++++.+++.|++.++...
T Consensus 568 ~~~v~~~~p~gtsl~~t~~~~~~ve~~l~~~~~v~~~~~~ 607 (1032)
T PRK09577 568 NFMVMVIRPQGTPLAETMQSVREVESYLRRHEPVAYTFAL 607 (1032)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHHHHHhhCCCceEEEEE
Confidence 4578889999999999999999999999888888877644
No 102
>COG4331 Predicted membrane protein [Function unknown]
Probab=24.51 E-value=3.9e+02 Score=22.45 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhc
Q 017950 74 VAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMK 127 (363)
Q Consensus 74 ~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~ 127 (363)
|+-=.++++-..+.+.|++=...+||.+++ +-+..|++..++.|.-.|..+
T Consensus 107 waYPlsi~vl~lFI~YQlyr~~~t~Si~li---vlti~Dv~viiLtllEYR~lk 157 (167)
T COG4331 107 WAYPLSILVLVLFILYQLYRFFNTGSISLI---VLTIFDVFVIILTLLEYRLLK 157 (167)
T ss_pred hhccHHHHHHHHHHHHHHHHHHhcccHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 333356677777888899999999999998 467789999988888887654
No 103
>PHA02692 hypothetical protein; Provisional
Probab=24.47 E-value=2.8e+02 Score=20.12 Aligned_cols=61 Identities=16% Similarity=0.282 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHH--HHHHHHHHHHhhccCCCCCCCcchHH--HHHH-HHHHHHHHHHHHHHHH
Q 017950 143 PVGIVVFASIMATLG--LQILFESGRELFTEAQPERDPEKEKW--MIGI-MVSVTVVKLALMMYCR 203 (363)
Q Consensus 143 ~l~~li~~~~~~~~~--~~i~~esi~~l~~~~~~~~~~~~~~~--~~~i-~~~~~~v~~~l~~~~~ 203 (363)
-+.+-++|++|-..- +.-+.+.++..++..++.-......| .+++ .+.++++-+.+++|.+
T Consensus 3 KLyaaifGVFmss~DdDF~~Fi~vVksVLtDk~~~~~~~~~~~~~~ii~~~~~~~~~vll~flYLK 68 (70)
T PHA02692 3 KLYAGVFGSFLSNSDEDFEEFLNIVRTVMTEKPACDRSKGVPWTTVFLIGLIAAAIGVLLCFHYLK 68 (70)
T ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555544321 23456777887776543211112233 2222 3334444555666654
No 104
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.37 E-value=2.7e+02 Score=19.97 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 017950 274 PAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKL 335 (363)
Q Consensus 274 ~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l 335 (363)
.|....++...+.. .+ .+|.+.+++...+++.++.-.+.+.+- ++..++.+++|+.|
T Consensus 11 r~gLFa~iag~L~~--~~-LnI~~A~i~tt~dG~~LDtF~V~d~~~--~~~~~~~~~~~~~~ 67 (68)
T cd04928 11 KPKLLSQLSSLLGD--LG-LNIAEAHAFSTDDGLALDIFVVTGWKR--GETAALGHALQKEI 67 (68)
T ss_pred CcchHHHHHHHHHH--CC-CceEEEEEEEcCCCeEEEEEEEecCCc--cchHHHHHHHHHhh
Confidence 34567788877743 33 589999999998899999988888754 46677777777765
No 105
>PF01390 SEA: SEA domain; InterPro: IPR000082 SEA is an extracellular domain associated with O-glycosylation []. Proteins found to contain SEA-modules include, agrin, enterokinase, 63 kDa Strongylocentrotus purpuratus (Purple sea urchin) sperm protein, perlecan (heparan sulphate proteoglycan core, mucin 1 and the cell surface antigen, 114/A10, and two functionally uncharacterised, probably extracellular, Caenorhabditis elegans proteins. Despite the functional diversity of these adhesive proteins, a common denominator seems to be their existence in heavily glycosylated environments. In addition, the better characterised proteins all contain O-glycosidic-linked carbohydrates such as heparan sulphate that contribute considerably to their molecular masses. The common module might regulate or assist binding to neighbouring carbohydrate moieties. Enterokinase, the initiator of intestinal digestion, is a mosaic protease composed of a distinctive assortment of domains []. ; PDB: 2ACM_B 1IVZ_A 2E7V_A.
Probab=24.29 E-value=2.2e+02 Score=21.64 Aligned_cols=44 Identities=25% Similarity=0.267 Sum_probs=29.9
Q ss_pred cccceeEEEEecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 017950 293 KYIETVRAYNFGCQ-YFVEADVVLPAEMSLSEAHNIGESLQEKLEQ 337 (363)
Q Consensus 293 ~~v~~v~~~~~G~~-~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~ 337 (363)
.....++++.+.++ +.++..+.+.++. ......+.+.++..+.+
T Consensus 51 ~~~~~~~I~~f~~gsViv~~~~~f~~~~-~~~~~~~~~~l~~~l~~ 95 (107)
T PF01390_consen 51 PGFVGVTITSFRPGSVIVDFDVIFDPPS-SAPPADIEEALQNALQQ 95 (107)
T ss_dssp TTEEEEEEEEEEETEEEEEEEEEEETTT--S-HHHHHHHHHHHHCC
T ss_pred CCcceEEEEEEECCCEEEEEEEEEeCCC-CCCHHHHHHHHHHHHHh
Confidence 56777888888766 9999999885542 23455666777777755
No 106
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=23.84 E-value=61 Score=19.08 Aligned_cols=21 Identities=19% Similarity=0.369 Sum_probs=11.5
Q ss_pred CCchhhHHHHhhhhhchhHHHHHH
Q 017950 13 SHLSIGYYIKTLRRHRKIAGYYKR 36 (363)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~y~~ 36 (363)
++-.|..|-+++ |++++||++
T Consensus 5 ~~d~f~eFY~rl---k~Ike~Hrr 25 (28)
T PF12108_consen 5 GGDPFSEFYERL---KEIKEYHRR 25 (28)
T ss_dssp S--HHHHHHHHH---HHHHHHHHS
T ss_pred CCChHHHHHHHH---HHHHHHHHh
Confidence 344555566665 566677764
No 107
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=23.59 E-value=4.4e+02 Score=29.62 Aligned_cols=65 Identities=25% Similarity=0.296 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHH-HHHHHHHHHHHhcCC
Q 017950 273 APAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEA-HNIGESLQEKLEQLP 339 (363)
Q Consensus 273 ~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~-h~i~~~l~~~l~~~~ 339 (363)
.|.+..+++.+-+++...++.++++++.+..-. ...+.+.++.+.+..++ .++.+++.+.-.++|
T Consensus 57 s~~~ve~~vt~piE~~l~~v~gv~~v~S~s~~g--~s~i~v~f~~~~d~~~a~~~v~~~v~~~~~~LP 122 (1051)
T TIGR00914 57 SPLEVEQRVTYPIETAMAGLPGLETTRSLSRYG--LSQVTVIFKDGTDLYFARQLVNERLQQARDNLP 122 (1051)
T ss_pred CHHHHHHHcCHHHHHHhcCCCCeeEEEEEccCc--eEEEEEEEeCCCCHHHHHHHHHHHHHHHHhhCC
Confidence 355666667777766667777777776654322 33444555555544433 445555554333577
No 108
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=23.56 E-value=5.6e+02 Score=23.29 Aligned_cols=68 Identities=18% Similarity=0.092 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHH--HHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHHHHHHHHHHHH
Q 017950 85 VLFLAKVYASAESRSLAVIASTLDSLLDLLSGFIL--WFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILF 162 (363)
Q Consensus 85 ~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~--l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~~~~~~~~i~~ 162 (363)
++=.+-..++-.++..+.+-.-+||++|.++.++. ++.+...- .. |+++.++..++..+.++.+..
T Consensus 47 i~DglDG~VAR~~~~~s~~G~~lDSLaD~VsFgVaPA~l~y~~~~-----------~~-~~~~~~~a~~~~~~~alRLAr 114 (234)
T COG1183 47 ILDGLDGRVARKLNAKSAFGAELDSLADLVSFGVAPALLLYSSGL-----------NT-GPLGLLAALLYVLCGALRLAR 114 (234)
T ss_pred HHcccchHHHHhcCCcchHHHHHhHHHHHHHhhHHHHHHHHHHhc-----------cC-CcHHHHHHHHHHHHHHHHHHH
Confidence 33344566778899999999999999999999885 33332221 11 556666666666666665544
Q ss_pred HH
Q 017950 163 ES 164 (363)
Q Consensus 163 es 164 (363)
-.
T Consensus 115 FN 116 (234)
T COG1183 115 FN 116 (234)
T ss_pred cc
Confidence 43
No 109
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.47 E-value=2.8e+02 Score=19.73 Aligned_cols=58 Identities=16% Similarity=0.051 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 017950 274 PAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQ 337 (363)
Q Consensus 274 ~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~ 337 (363)
.|.+.+++.+.+.++ + -.+.+++....+..+...+.+.+|++.++ .++.+.++..-++
T Consensus 9 rpGiv~~vt~~la~~--~-~nI~dl~~~~~~~~f~~~~~v~~p~~~~~---~~l~~~l~~l~~~ 66 (75)
T cd04870 9 RPGLTSALTEVLAAH--G-VRILDVGQAVIHGRLSLGILVQIPDSADS---EALLKDLLFKAHE 66 (75)
T ss_pred CCCHHHHHHHHHHHC--C-CCEEecccEEEcCeeEEEEEEEcCCCCCH---HHHHHHHHHHHHH
Confidence 457789999999653 3 35677766666777778888888877544 3445555544443
No 110
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=23.25 E-value=4.6e+02 Score=22.95 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHhcCCCccccceeEEEEec-----Ce-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEE
Q 017950 274 PAEYLAKLTYLIWNHHEEIKYIETVRAYNFG-----CQ-YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVH 347 (363)
Q Consensus 274 ~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G-----~~-~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vh 347 (363)
-|.+..++.+.+.+ .+ ..|.++++...+ .. +.+.+.+.+|++..+. ++.+++++.-.++ + +...
T Consensus 105 rPGIV~~vT~~la~--~~-iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~---~L~~~l~~l~~eL-~---vd~~ 174 (190)
T PRK11589 105 SPHLIERFTALFDS--HH-MNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAA---NIEQAFKALCTEL-N---AQGS 174 (190)
T ss_pred CCCHHHHHHHHHHH--cC-CChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHH---HHHHHHHHHHHHh-C---ceEE
Confidence 35788999998864 33 357777666443 33 8899999999998654 4444554444443 2 3445
Q ss_pred EeeCCCC
Q 017950 348 VDFNATH 354 (363)
Q Consensus 348 id~~~~~ 354 (363)
+||...+
T Consensus 175 l~~~~~~ 181 (190)
T PRK11589 175 INVVNYS 181 (190)
T ss_pred EEEeecc
Confidence 5665433
No 111
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=23.08 E-value=2.1e+02 Score=19.75 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=30.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHhc-C-CCccEEEEEEeeCCC
Q 017950 311 ADVVLPAEMSLSEAHNIGESLQEKLEQ-L-PEVERAFVHVDFNAT 353 (363)
Q Consensus 311 v~I~~~~~~~l~~~h~i~~~l~~~l~~-~-~~v~~v~Vhid~~~~ 353 (363)
++|.+.+..+.++-.++.+.+.+.+.+ + -.-++++|.++....
T Consensus 4 v~i~l~~grt~eqk~~l~~~it~~l~~~lg~p~~~v~V~i~e~~~ 48 (64)
T PRK01964 4 VQIQLLEGRPEEKIKNLIREVTEAISATLDVPKERVRVIVNEVPS 48 (64)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEcCh
Confidence 456665567888999999999998864 2 123467787776543
No 112
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=22.89 E-value=3.5e+02 Score=20.61 Aligned_cols=29 Identities=3% Similarity=0.024 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017950 70 KNERVAIYASNAANLVLFLAKVYASAESR 98 (363)
Q Consensus 70 ~~~~~~l~~sl~~n~~l~v~k~~~~~~s~ 98 (363)
+.|+..-|++....+++.++-+..+..++
T Consensus 3 ~~E~iL~~Ig~il~il~~~~~l~~~~~~~ 31 (100)
T PF13273_consen 3 TAEKILGWIGGILGILFGFFGLLIGFFGN 31 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 45677778888888777777777666644
No 113
>PHA03054 IMV membrane protein; Provisional
Probab=22.81 E-value=3.1e+02 Score=19.96 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHH--HHHHHHHHHHHhhccCCCCCC---CcchHH--HHHHHHHHHHHHHHHHHHHH
Q 017950 143 PVGIVVFASIMATL--GLQILFESGRELFTEAQPERD---PEKEKW--MIGIMVSVTVVKLALMMYCR 203 (363)
Q Consensus 143 ~l~~li~~~~~~~~--~~~i~~esi~~l~~~~~~~~~---~~~~~~--~~~i~~~~~~v~~~l~~~~~ 203 (363)
.+.+-++|++|-.. -+.-+.+.++..+.+..+... .....| .+++.+..+++-+.+++|.+
T Consensus 3 kLya~ifGvF~ss~d~Df~~Fi~vV~sVl~dk~~~~~~~~~~~~~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 3 KLYAAIFGVFMGSPEDDLTDFIEIVKSVLSDEKTVTSTNNTGCWGWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred hHHHHHHHHhhCCchHHHHHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555554432 123456777777766532111 112233 23333334444555666654
No 114
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=22.78 E-value=2.6e+02 Score=19.03 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=29.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHhc-C-CCccEEEEEEeeCC
Q 017950 309 VEADVVLPAEMSLSEAHNIGESLQEKLEQ-L-PEVERAFVHVDFNA 352 (363)
Q Consensus 309 v~v~I~~~~~~~l~~~h~i~~~l~~~l~~-~-~~v~~v~Vhid~~~ 352 (363)
+++++. ++..+.++-.++.+.+.+.+.+ + ...+.++|.++...
T Consensus 3 i~i~i~-~~grt~eqK~~l~~~it~~l~~~lg~~~~~v~V~i~e~~ 47 (63)
T TIGR00013 3 VNIYIL-KEGRTDEQKRQLIEGVTEAMAETLGANLESIVVIIDEMP 47 (63)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcC
Confidence 344443 3667899999999999999964 3 23457788877654
No 115
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=22.69 E-value=2e+02 Score=31.66 Aligned_cols=100 Identities=22% Similarity=0.227 Sum_probs=70.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----------CCCHHHHHHHHHHHHhcCCCccccceeEEEEecCeEE
Q 017950 239 WWIDPIGAILIALYTMGNWGNTVMENVWSLIGR----------TAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYF 308 (363)
Q Consensus 239 ~~~D~i~aiii~~~i~~~~~~~~~e~~~~L~g~----------s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~ 308 (363)
.|+=.+++++++++=.+++.++=.++++.+.+. .+|+|.+++|++=++...-++.+++.+|-.+. .=.
T Consensus 13 R~lVll~~~~~~~~G~~s~~~lplDA~PD~s~~QV~I~Te~PG~sPeeVE~~iT~Plet~m~G~pg~~tvRs~S~--~g~ 90 (1027)
T COG3696 13 RLLVLLGALLLAFYGTYSLKKLPLDAFPDLSPVQVQIQTEAPGQSPEEVENQVTYPLETAMMGLPGVKTVRSISK--YGL 90 (1027)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccccCCCCCCceEEEEecCCCCCHHHHHhhceeeehHhhcCCCCceeeecccc--CCc
Confidence 466677788888888888888989999988843 23678888888777666666666777665433 123
Q ss_pred EEEEEEeCCCCCHHHHHH-HHHHHHHHHhcCCC
Q 017950 309 VEADVVLPAEMSLSEAHN-IGESLQEKLEQLPE 340 (363)
Q Consensus 309 v~v~I~~~~~~~l~~~h~-i~~~l~~~l~~~~~ 340 (363)
-.+.|.++..+++.-|.+ +.|++++.=+++|.
T Consensus 91 S~VtViF~dgtDiY~ARq~V~ErL~~v~~~LP~ 123 (1027)
T COG3696 91 SLVTVIFKDGTDLYWARQRVLERLSQVQSQLPE 123 (1027)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHHHHHHhCCC
Confidence 456788888887776655 45666665566774
No 116
>cd02411 archeal_30S_S3_KH K homology RNA-binding domain (KH) of the archaeal 30S small ribosomal subunit S3 protein. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=22.51 E-value=3.1e+02 Score=20.34 Aligned_cols=56 Identities=13% Similarity=0.010 Sum_probs=31.1
Q ss_pred cccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEe
Q 017950 293 KYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVD 349 (363)
Q Consensus 293 ~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid 349 (363)
.++.++.+...+....+.+|..-|+-. +...-.-.++++..|++..+...+.+.+.
T Consensus 26 agIs~IeI~r~~~~i~V~I~t~~pg~i-IGk~G~~I~~l~~~l~k~~~~~~v~I~v~ 81 (85)
T cd02411 26 AGYGGMEILRTPLGTQITIYAERPGMV-IGRGGKNIRELTEILETKFGLENPQIDVQ 81 (85)
T ss_pred CcccEEEEEEcCCcEEEEEEECCCCce-ECCCchhHHHHHHHHHHHhCCCCceEEEE
Confidence 367777887777778888888544422 22222223555555554344434555553
No 117
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.47 E-value=4.2e+02 Score=23.82 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=20.5
Q ss_pred CCCCCcchhHhhhHHHHHHHHHHHHHHH
Q 017950 132 YQYPIGKNRMQPVGIVVFASIMATLGLQ 159 (363)
Q Consensus 132 ~~~P~G~~r~E~l~~li~~~~~~~~~~~ 159 (363)
.++..|-.++|.+..++-+++++++++.
T Consensus 52 ~~~~~~~~~lE~~WtviP~iil~~l~~~ 79 (228)
T MTH00140 52 CRTILEAQKLETIWTIVPALILVFLALP 79 (228)
T ss_pred CccccccchhhhhhhhHHHHHHHHHHHH
Confidence 3566788899998888887776666554
No 118
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=22.43 E-value=8.5e+02 Score=24.93 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=14.4
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHH
Q 017950 307 YFVEADVVLPAEMSLSEAHNIGESL 331 (363)
Q Consensus 307 ~~v~v~I~~~~~~~l~~~h~i~~~l 331 (363)
+.|+++=.++++ ...+-++.-+++
T Consensus 425 v~v~~~y~i~~~-~~~~f~~~~~~~ 448 (524)
T PF05977_consen 425 VMVTIEYRIAPE-DAAAFLAAMREL 448 (524)
T ss_pred EEEEEEEEECcc-cHHHHHHHHHHH
Confidence 777777777776 344444444444
No 119
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=22.39 E-value=3e+02 Score=19.69 Aligned_cols=60 Identities=22% Similarity=0.208 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhcCCCccccceeEEEEec--CeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEE
Q 017950 275 AEYLAKLTYLIWNHHEEIKYIETVRAYNFG--CQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERA 344 (363)
Q Consensus 275 ~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G--~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v 344 (363)
+..+.+|...+.+ .+ ..+.++.+.... ....+.+.+.++ +.++ .+.+-++|+++|+|.+|
T Consensus 17 ~GlL~dI~~~i~~--~~-~nI~~i~~~~~~~~~~~~~~l~v~V~---d~~~----L~~ii~~L~~i~~V~~V 78 (80)
T PF13291_consen 17 PGLLADITSVISE--NG-VNIRSINARTNKDDGTARITLTVEVK---DLEH----LNQIIRKLRQIPGVISV 78 (80)
T ss_dssp TTHHHHHHHHHHC--SS-SEEEEEEEEE--ETTEEEEEEEEEES---SHHH----HHHHHHHHCTSTTEEEE
T ss_pred CCHHHHHHHHHHH--CC-CCeEEEEeEEeccCCEEEEEEEEEEC---CHHH----HHHHHHHHHCCCCeeEE
Confidence 4678889998854 33 478888888863 448888889885 2333 34555677779998765
No 120
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=22.33 E-value=3.1e+02 Score=19.85 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=22.6
Q ss_pred CCCCCCCCcchhHhhhHHHHHHHHHHHHHHHHH
Q 017950 129 PNQYQYPIGKNRMQPVGIVVFASIMATLGLQIL 161 (363)
Q Consensus 129 ~~~~~~P~G~~r~E~l~~li~~~~~~~~~~~i~ 161 (363)
+...+++.+..++|.+..++-++++++.++-.+
T Consensus 50 ~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~pSl 82 (84)
T PF02790_consen 50 KFPNKFFNHNNKLEIIWTIIPAIILLFLAFPSL 82 (84)
T ss_dssp SSS--S---SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhhHHHHHHHHHHHhhhc
Confidence 444466778889999999999999888887543
No 121
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=21.99 E-value=1.9e+02 Score=22.19 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=21.7
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 017950 307 YFVEADVVLPAEMSLSEAHNIGESLQE 333 (363)
Q Consensus 307 ~~v~v~I~~~~~~~l~~~h~i~~~l~~ 333 (363)
+.|++++.+|++++.++..++..+=++
T Consensus 3 flv~m~v~~P~~~~~~~~~~~~a~E~~ 29 (91)
T PF02426_consen 3 FLVRMTVNVPPDMPPEEVDRLKAREKA 29 (91)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 678999999999999988887654333
No 122
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=21.93 E-value=8e+02 Score=24.43 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=8.3
Q ss_pred CcchHHHHHHHHHHHHHHH
Q 017950 178 PEKEKWMIGIMVSVTVVKL 196 (363)
Q Consensus 178 ~~~~~~~~~i~~~~~~v~~ 196 (363)
+....+...+....+++-.
T Consensus 450 ~~~~ny~~~~~~~~~~~~~ 468 (482)
T TIGR00907 450 PENMNYAVVVFAGVLAISL 468 (482)
T ss_pred cccCChHhHHHHHHHHHHH
Confidence 3444555544433333333
No 123
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=21.89 E-value=1.9e+02 Score=22.13 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=28.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 017950 310 EADVVLPAEMSLSEAHNIGESLQEKLEQLPEV 341 (363)
Q Consensus 310 ~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v 341 (363)
+++|..|..+...+|.+.++++-+.+++.+++
T Consensus 3 ~I~I~r~H~Lg~~eAr~~~e~~a~~l~~~~~~ 34 (91)
T TIGR02610 3 SISVERDHSLGPAAARAKAEDLARKLTDRYGL 34 (91)
T ss_pred ceEEEecCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 57899999999999999999999999876665
No 124
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=21.83 E-value=3.7e+02 Score=22.31 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCCccccceeEEEEecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEeeC
Q 017950 275 AEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQ-YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFN 351 (363)
Q Consensus 275 ~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~-~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~ 351 (363)
++..+++...+. ..|+|..++.+- |+. +.+.++ .+ + . .++.+-+.+.+...|+|.++..++--.
T Consensus 80 ~~~~~~~~~~l~-~~p~V~~~~~~t----G~~dl~~~v~--~~-d--~---~~l~~~~~~~l~~~~gV~~~~t~ivl~ 144 (153)
T PRK11179 80 AKDYPSALAKLE-SLDEVVEAYYTT----GHYSIFIKVM--CR-S--I---DALQHVLINKIQTIDEIQSTETLISLQ 144 (153)
T ss_pred cccHHHHHHHHh-CCCCEEEEEEcc----cCCCEEEEEE--EC-C--H---HHHHHHHHHHhhcCCCeeeEEEEEEEe
Confidence 344566666664 478877665442 443 555544 43 2 2 344455667777899999777666543
No 125
>PF04456 DUF503: Protein of unknown function (DUF503); InterPro: IPR007546 This is a family of conserved hypothetical bacterial proteins, including TT1725 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579), which has a ferredoxin-like alpha+beta-sandwich fold [].; PDB: 1J27_A.
Probab=21.74 E-value=3.3e+02 Score=20.67 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=29.1
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEeeC
Q 017950 308 FVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFN 351 (363)
Q Consensus 308 ~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~ 351 (363)
.+.+++.+|.--||++=-.+.+.+..++++.++|. ..++++.
T Consensus 4 ~l~l~l~lp~~~SLKeKR~vvksl~~klr~rfnvS--vaEv~~~ 45 (90)
T PF04456_consen 4 VLRLELRLPGAHSLKEKRQVVKSLIDKLRNRFNVS--VAEVGHQ 45 (90)
T ss_dssp EEEEEEE----SSHHHHHHHHHHHHHHHHHHSS-E--EEEEE-T
T ss_pred EEEEEEEeccccchhHhHHHHHHHHHHHHhhCCeE--EEEecCC
Confidence 46788888888999999999999999999777884 3455554
No 126
>PRK15082 glutathione ABC transporter permease GsiD; Provisional
Probab=21.72 E-value=6.7e+02 Score=23.48 Aligned_cols=14 Identities=14% Similarity=0.085 Sum_probs=10.8
Q ss_pred CCCCCCCCCcchhH
Q 017950 128 KPNQYQYPIGKNRM 141 (363)
Q Consensus 128 r~~~~~~P~G~~r~ 141 (363)
.+|+..||+|-.+.
T Consensus 74 ~~Ps~~h~lGTD~~ 87 (301)
T PRK15082 74 AGPSLQHWFGVDSL 87 (301)
T ss_pred CCCCCCCCCCCCCC
Confidence 56778899998653
No 127
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=21.71 E-value=3.6e+02 Score=30.17 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 017950 274 PAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKL 335 (363)
Q Consensus 274 ~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l 335 (363)
|+++.+.+.+-+++...++.++++++...... ...+.++++.+.+.+++ .+++++++
T Consensus 54 ~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~g--~s~i~v~f~~~~d~~~a---~~~v~~~i 110 (1021)
T PF00873_consen 54 PEEVEQLVTKPLEEALSSVEGVKEIRSTSREG--SSSITVEFDDGTDIDEA---LQEVREKI 110 (1021)
T ss_dssp HHHHHHHTHHHHHHTHCSSTTEEEEEEEETTS--EEEEEEEESTTS-HHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEEEEecCC--cEEEEEEeccccCHHHH---HHHHHHHH
Confidence 55667778888887777888888888776433 44556666666655553 33444444
No 128
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=21.60 E-value=1.2e+02 Score=23.22 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=23.3
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 017950 308 FVEADVVLPAEMSLSEAHNIGESLQEKLEQ 337 (363)
Q Consensus 308 ~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~ 337 (363)
-+=++|...+++++.|.+++.+.+++.+..
T Consensus 38 ~vLvni~~~~d~~l~ev~~~~~~i~~~~~~ 67 (95)
T PF12327_consen 38 GVLVNITGGPDLSLSEVNEAMEIIREKADP 67 (95)
T ss_dssp EEEEEEEE-TTS-HHHHHHHHHHHHHHSST
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHHHHhhc
Confidence 344566788999999999999999999863
No 129
>PRK06937 type III secretion system protein; Reviewed
Probab=21.25 E-value=5.6e+02 Score=22.42 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=26.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEeeCC
Q 017950 311 ADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNA 352 (363)
Q Consensus 311 v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~~ 352 (363)
+.|.++|+ +...+.+.+...++..+++.++.|..||.-
T Consensus 133 v~I~V~P~----D~~~v~~~~~~~~~~~~~~~~l~i~~D~~L 170 (204)
T PRK06937 133 VVVRVNPD----QAAAVREQIAKVLKDFPEVGYLEVVADARL 170 (204)
T ss_pred EEEEECHH----HHHHHHHHHHHHHHhCCCCccEEEEeCCCC
Confidence 34555553 667777777777777888888888888764
No 130
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=21.08 E-value=9.5e+02 Score=25.02 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Q 017950 154 ATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRRFKNEIVRA 212 (363)
Q Consensus 154 ~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~~~s~~l~a 212 (363)
...|+.++.|++..-.-.--|....-........++.++ ..++.|.+|..+...+|
T Consensus 317 ~~~g~~li~egi~sa~yh~CPn~~~fqfdt~fmyvi~~L---~~lkiyq~RH~di~a~a 372 (570)
T PF13965_consen 317 YAMGLALIMEGILSACYHICPNRSNFQFDTSFMYVIAGL---CMLKIYQKRHPDINASA 372 (570)
T ss_pred HHHHHHHHHHHHHHHHhhcCcCchhhHHHHHHHHHHHHH---HHHHHHHhhCCCCchhH
Confidence 344555666666554433333221122222222222221 23577777776654444
No 131
>PF05105 Phage_holin_4: Holin family ; InterPro: IPR006480 This group of sequences describe one of the many mutually dissimilar families of holins, phage proteins that act together with lytic enzymes in bacterial lysis. This family includes, besides phage holins, the protein TcdE/UtxA involved in toxin secretion in Clostridium difficile and related species []. This entry is represented by the Bacteriophage phi-29, Gp14 (holin). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.89 E-value=4.3e+02 Score=20.89 Aligned_cols=41 Identities=22% Similarity=0.442 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 017950 242 DPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLI 285 (363)
Q Consensus 242 D~i~aiii~~~i~~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~ 285 (363)
.++...++..++..+...++ ||...+ |...| +.+.+..+.+
T Consensus 74 ~~~~~~~~~~~i~~E~~SI~-EN~~~~-G~~iP-~~l~~~l~~l 114 (118)
T PF05105_consen 74 LPFRTLVIIFYILNELISIL-ENLAEM-GVPIP-KWLKKFLKQL 114 (118)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHh-CCCch-HHHHHHHHHH
Confidence 46666778888888877666 888776 75545 4444444344
No 132
>PRK11023 outer membrane lipoprotein; Provisional
Probab=20.85 E-value=2e+02 Score=25.19 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=44.0
Q ss_pred HhhcCCCCCHHHHHHHHHHHHhcCCCccccce-eEEEEecCeEEEEEEEEeCCCCCHHHHHH--HHHHHHHHHhcCCCcc
Q 017950 266 WSLIGRTAPAEYLAKLTYLIWNHHEEIKYIET-VRAYNFGCQYFVEADVVLPAEMSLSEAHN--IGESLQEKLEQLPEVE 342 (363)
Q Consensus 266 ~~L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~-v~~~~~G~~~~v~v~I~~~~~~~l~~~h~--i~~~l~~~l~~~~~v~ 342 (363)
-.|.|..+.++..++..+++. ..+||++|++ +++. + +.+ .-...+| |..+++..|..-+.+.
T Consensus 79 V~L~G~V~~~~~k~~A~~ia~-~v~GV~~V~N~l~V~---~----------~~~-~~~~~~D~~It~kik~~L~~~~~v~ 143 (191)
T PRK11023 79 VLLTGQSPNAELSERAKQIAM-GVEGVNEVYNEIRQG---Q----------PIG-LGTASKDTWITTKVRSQLLTSDSVK 143 (191)
T ss_pred EEEEEEeCCHHHHHHHHHHHh-cCCCceeecceeeec---c----------ccc-cccccCcHHHHHHHHHHHhcCCCCC
Confidence 346787777777888888886 5899988864 3321 1 111 1112233 8889999997655666
Q ss_pred EEEEEEeeC
Q 017950 343 RAFVHVDFN 351 (363)
Q Consensus 343 ~v~Vhid~~ 351 (363)
...|+++.+
T Consensus 144 ~~~I~V~t~ 152 (191)
T PRK11023 144 SSNVKVTTE 152 (191)
T ss_pred cceEEEEEE
Confidence 555555544
No 133
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=20.76 E-value=8.7e+02 Score=24.47 Aligned_cols=43 Identities=7% Similarity=-0.075 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q 017950 60 LTQEEMKQLAKNERVAIYASNAANLVLFLAKVYASAESRSLAV 102 (363)
Q Consensus 60 ~~~~~~~~~~~~~~~~l~~sl~~n~~l~v~k~~~~~~s~S~al 102 (363)
.+||+.+.-+++.|++.+-++....+-+.+.+.++..-+-++.
T Consensus 16 w~pe~~~~w~~~~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~ 58 (462)
T PRK15034 16 WKPENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAVTV 58 (462)
T ss_pred CCCCChHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555444445555555555555555555555666555555444
Done!