Query 017950
Match_columns 363
No_of_seqs 229 out of 1756
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 07:31:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1z_P YIIP, cation efflux fam 100.0 3.4E-54 1.2E-58 406.9 17.0 279 70-354 9-292 (306)
2 3h90_A Ferrous-iron efflux pum 100.0 5.5E-53 1.9E-57 394.9 18.5 275 73-354 3-283 (283)
3 3byp_A CZRB protein; membrane 99.5 3.4E-14 1.2E-18 109.9 10.9 84 267-352 1-87 (94)
4 2zzt_A Putative uncharacterize 99.5 1.9E-13 6.5E-18 108.3 10.0 84 269-353 1-87 (107)
5 3h90_A Ferrous-iron efflux pum 97.4 8E-05 2.7E-09 68.6 4.3 93 74-174 112-204 (283)
6 3j1z_P YIIP, cation efflux fam 97.4 8.4E-05 2.9E-09 69.3 4.4 93 74-174 121-213 (306)
7 3cq1_A Putative uncharacterize 69.7 19 0.00064 27.0 7.5 47 309-357 43-90 (103)
8 2cvi_A 75AA long hypothetical 69.5 11 0.00038 26.8 5.9 67 278-357 15-82 (83)
9 1uwd_A Hypothetical protein TM 54.8 20 0.00068 26.8 5.1 34 324-357 58-91 (103)
10 3lno_A Putative uncharacterize 48.8 24 0.00081 26.7 4.7 48 307-357 46-94 (108)
11 1ib8_A Conserved protein SP14. 48.2 65 0.0022 26.3 7.6 44 293-336 26-69 (164)
12 2dbb_A Putative HTH-type trans 45.5 77 0.0026 24.8 7.7 66 272-349 76-142 (151)
13 2kjw_A TS9, 30S ribosomal prot 39.3 87 0.003 23.2 6.4 67 267-337 8-74 (96)
14 2zbc_A 83AA long hypothetical 36.9 56 0.0019 22.6 4.9 60 278-350 15-75 (83)
15 1rwu_A Hypothetical UPF0250 pr 36.1 1.2E+02 0.0041 22.9 6.9 62 274-343 46-107 (109)
16 3zzp_A TS9, ribosomal protein 35.2 1.1E+02 0.0037 21.6 6.1 66 268-337 9-74 (77)
17 4dx5_A Acriflavine resistance 35.2 2E+02 0.007 30.6 11.1 96 243-339 9-119 (1057)
18 2jsx_A Protein NAPD; TAT, proo 34.4 1.2E+02 0.004 22.3 6.4 66 274-352 15-80 (95)
19 1mli_A Muconolactone isomerase 31.1 1.6E+02 0.0055 21.8 7.6 22 307-328 3-24 (96)
20 2cg4_A Regulatory protein ASNC 30.6 1.2E+02 0.0042 23.6 6.6 60 277-349 81-141 (152)
21 2f1f_A Acetolactate synthase i 29.9 1.8E+02 0.0062 23.6 7.5 63 274-345 13-75 (164)
22 3abf_A 4-oxalocrotonate tautom 27.4 80 0.0027 20.5 4.2 43 311-353 4-48 (64)
23 2jp3_A FXYD domain-containing 27.2 1.1E+02 0.0038 21.0 4.6 30 133-163 9-38 (67)
24 2djw_A Probable transcriptiona 25.6 49 0.0017 23.7 3.0 64 274-350 11-75 (92)
25 2yy3_A Elongation factor 1-bet 24.3 2.1E+02 0.0071 20.9 7.4 63 278-347 21-86 (91)
26 2i52_A Hypothetical protein; s 24.1 58 0.002 25.2 3.1 30 322-352 41-70 (121)
27 2c5k_P Vacuolar protein sortin 23.8 22 0.00076 19.5 0.5 15 25-39 11-25 (26)
28 1gh8_A Translation elongation 22.5 1.9E+02 0.0064 21.0 5.5 63 279-347 20-83 (89)
29 2pc6_A Probable acetolactate s 21.4 1.9E+02 0.0064 23.6 6.0 63 274-345 14-76 (165)
30 2cyy_A Putative HTH-type trans 21.1 1.9E+02 0.0065 22.5 6.0 65 273-351 75-140 (151)
31 2ogf_A Hypothetical protein MJ 20.5 76 0.0026 24.5 3.1 28 322-349 46-73 (122)
32 2dt7_A Splicing factor 3A subu 20.1 58 0.002 19.7 1.9 21 13-36 8-28 (38)
No 1
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=100.00 E-value=3.4e-54 Score=406.87 Aligned_cols=279 Identities=22% Similarity=0.285 Sum_probs=255.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHH
Q 017950 70 KNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVF 149 (363)
Q Consensus 70 ~~~~~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~ 149 (363)
...|++.++++++|++++++|+++|++|||+||+||++||++|+++.++++++.+.++||++.+|||||+|+|++++++.
T Consensus 9 ~~vr~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~ 88 (306)
T 3j1z_P 9 FWVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQ 88 (306)
T ss_dssp CCSSTTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHhHHHhhHHHHHHH
Q 017950 150 ASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRR----FKNEIVRAYAQDHFFDVITNS 225 (363)
Q Consensus 150 ~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~----~~s~~l~a~~~~~~~D~~~~~ 225 (363)
|++++++++++++||++++++|++++ ...+++++++++++++..+++++++ .+|+.+++++.|+++|+++|
T Consensus 89 ~~~l~~~~~~i~~eai~~l~~p~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s- 163 (306)
T 3j1z_P 89 SAFIMGSAFLLLFYGGERLLNPSPVE----NATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLN- 163 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCCGG----GTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHhhhheecCCCcc----ccccchhhhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhh-
Confidence 99999999999999999999987642 2355677888889999999888865 46899999999999999997
Q ss_pred HHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCccccceeEEEEec
Q 017950 226 IGLATALLAIKF-YWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFG 304 (363)
Q Consensus 226 ~~v~~~~~~~~~-~~~~D~i~aiii~~~i~~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G 304 (363)
++++++.++.++ +||+||++++++++++++.++++++++...|+|+++|++..++|++.+. ..|+|.++|++|+|+.|
T Consensus 164 ~~vli~~~~~~~g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~~~~~~~~I~~~i~-~~~~V~~vh~l~~~~~G 242 (306)
T 3j1z_P 164 AAVLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAK-EDPRVLGLHDLRTRQAG 242 (306)
T ss_dssp TTCCCTTSSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HSTTBCCCCCBCCEEET
T ss_pred hHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHh-cCCCcceeeeEEEEEEC
Confidence 566556555544 6899999999999999999999999999999999999999999999996 58999999999999999
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEeeCCCC
Q 017950 305 CQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNATH 354 (363)
Q Consensus 305 ~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~~~~ 354 (363)
+++++++||++|+++|++|+|+|++++|++|++.+++.+++||+||....
T Consensus 243 ~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~~~v~IhveP~~~e 292 (306)
T 3j1z_P 243 KTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQVE 292 (306)
T ss_dssp TEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTTCEEEECCEETTSC
T ss_pred CcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCCCCC
Confidence 99999999999999999999999999999998766778999999998654
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=100.00 E-value=5.5e-53 Score=394.90 Aligned_cols=275 Identities=17% Similarity=0.224 Sum_probs=252.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHH
Q 017950 73 RVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASI 152 (363)
Q Consensus 73 ~~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~ 152 (363)
||++++++++|++++++|+++|+.|||.||+||++||+.|+++.++++++.+.++||++.+|||||+|+|++++++.|++
T Consensus 3 ~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~ 82 (283)
T 3h90_A 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMF 82 (283)
T ss_dssp CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHhHHHhhHHHHHHHHHH
Q 017950 153 MATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRR----FKNEIVRAYAQDHFFDVITNSIGL 228 (363)
Q Consensus 153 ~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~----~~s~~l~a~~~~~~~D~~~~~~~v 228 (363)
++++++++++||++++++|++++. ..++++++++++++|.++++++++ .+|+.+++++.|+++|.++| +++
T Consensus 83 l~~~~~~i~~eai~~l~~~~~~~~----~~~~l~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s-~~v 157 (283)
T 3h90_A 83 ISGSALFLFLTGIQHLISPTPMTD----PGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMN-GAI 157 (283)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCCCC----CCCCTHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCC-SCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HHH
Confidence 999999999999999999876432 345678889999999999998865 47999999999999999996 666
Q ss_pred HHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCccccceeEEEEecCeE
Q 017950 229 ATALLAIKF-YWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQY 307 (363)
Q Consensus 229 ~~~~~~~~~-~~~~D~i~aiii~~~i~~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~ 307 (363)
+++.++.++ ++|+||++++++++++++.++++++++...|+|+++|++..++|++.+.+ .|+|.++|++|+|+.|+++
T Consensus 158 li~~~~~~~g~~~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll~~~~~~~~~~~i~~~i~~-~~~V~~v~~l~~~~~G~~~ 236 (283)
T 3h90_A 158 LLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTS-WPGVSGAHDLRTRQSGPTR 236 (283)
T ss_dssp CSSSCSCSTTSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-SSSCSEEEEEEEEEETTEE
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc-CCCcccceeeEEEEECCcE
Confidence 666555444 57999999999999999999999999999999999999999999999975 8999999999999999999
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHHHh-cCCCccEEEEEEeeCCCC
Q 017950 308 FVEADVVLPAEMSLSEAHNIGESLQEKLE-QLPEVERAFVHVDFNATH 354 (363)
Q Consensus 308 ~v~v~I~~~~~~~l~~~h~i~~~l~~~l~-~~~~v~~v~Vhid~~~~~ 354 (363)
++++||++|++++++|+|++++++|++|+ ++|. .+++||+||+.++
T Consensus 237 ~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~-~~v~ih~ep~~~~ 283 (283)
T 3h90_A 237 FIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCSVV 283 (283)
T ss_dssp EEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT-CEEEEEEECSCCC
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC-CeEEEEeccCCCC
Confidence 99999999999999999999999999997 4665 7899999998653
No 3
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.54 E-value=3.4e-14 Score=109.89 Aligned_cols=84 Identities=19% Similarity=0.384 Sum_probs=73.2
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcC--CCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh-cCCCccE
Q 017950 267 SLIGRTAPAEYLAKLTYLIWNHH--EEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLE-QLPEVER 343 (363)
Q Consensus 267 ~L~g~s~~~e~~~~I~~~~~~~~--~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~-~~~~v~~ 343 (363)
.|+|.+++++..++|++.+.+ . |+|.++|++|+|+.|+++++++||++++++++.++|++.+++++.|+ ++|.+ +
T Consensus 1 ~Lld~~~~~~~~~~I~~~l~~-~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~-~ 78 (94)
T 3byp_A 1 GLMDEGLPPEEVERIRAFLQE-RIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-Q 78 (94)
T ss_dssp -----CCCHHHHHHHHHHHHH-HHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE-E
T ss_pred CCcCCCCCHHHHHHHHHHHHh-cCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCC-E
Confidence 478989999999999999964 7 99999999999999999999999999999999999999999999996 57665 9
Q ss_pred EEEEEeeCC
Q 017950 344 AFVHVDFNA 352 (363)
Q Consensus 344 v~Vhid~~~ 352 (363)
++||+||+.
T Consensus 79 vtIh~ep~~ 87 (94)
T 3byp_A 79 ATIHVEPEG 87 (94)
T ss_dssp EEEEEEECC
T ss_pred EEEEeCCCC
Confidence 999999953
No 4
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.47 E-value=1.9e-13 Score=108.30 Aligned_cols=84 Identities=18% Similarity=0.352 Sum_probs=74.3
Q ss_pred cCCCCCHH--HHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh-cCCCccEEE
Q 017950 269 IGRTAPAE--YLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLE-QLPEVERAF 345 (363)
Q Consensus 269 ~g~s~~~e--~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~-~~~~v~~v~ 345 (363)
||.+++++ ..++|++.+. ..|+|.+++++|+|+.|+.+++++||++++++++.++|++++++++.|+ ++|++.+++
T Consensus 1 md~~~~~~~~~~~~I~~~l~-~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vt 79 (107)
T 2zzt_A 1 MDGMKRTELDMYDDIFAVLE-RFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVT 79 (107)
T ss_dssp ---CCHHHHHHHHHHHHHHT-TCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred CCCCCCccHHHHHHHHHHHH-cCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 46678888 8999999996 5899999999999999999999999999999999999999999999997 577799999
Q ss_pred EEEeeCCC
Q 017950 346 VHVDFNAT 353 (363)
Q Consensus 346 Vhid~~~~ 353 (363)
||+||...
T Consensus 80 IhvEp~~~ 87 (107)
T 2zzt_A 80 IHVEPLGN 87 (107)
T ss_dssp EEEEETTC
T ss_pred EEEecCCC
Confidence 99999764
No 5
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=97.44 E-value=8e-05 Score=68.58 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHHH
Q 017950 74 VAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIM 153 (363)
Q Consensus 74 ~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~~ 153 (363)
.+..+++++|.+++....-.+-..+|.++.||+.|...|+++++.++++.... .+|+..++++++++.++++
T Consensus 112 ~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~--------~~g~~~~D~i~~i~ia~~i 183 (283)
T 3h90_A 112 IVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLS--------WYGWHRADALFALGIGIYI 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSC--------STTSCCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCchHHHHHHHHHHHHHH
Confidence 45677889999998888888889999999999999999999998776664321 2588889999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCC
Q 017950 154 ATLGLQILFESGRELFTEAQP 174 (363)
Q Consensus 154 ~~~~~~i~~esi~~l~~~~~~ 174 (363)
+..++.++.+++..|++..++
T Consensus 184 ~~~~~~l~~~s~~~Ll~~~~~ 204 (283)
T 3h90_A 184 LYSALRMGYEAVQSLLDRALP 204 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999976543
No 6
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=97.44 E-value=8.4e-05 Score=69.27 Aligned_cols=93 Identities=18% Similarity=0.124 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHHH
Q 017950 74 VAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIM 153 (363)
Q Consensus 74 ~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~~ 153 (363)
.+...+++.|.++.......+-..+|.++.||+.|...|+++++.++++.-... +|+..++++++++.++++
T Consensus 121 ~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~--------~g~~~~Dpi~ai~Ia~~I 192 (306)
T 3j1z_P 121 VVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQ--------YGWWWADGLFAVLIACYI 192 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCC--------SSSCCCHHHHHHHHHHHH
T ss_pred hhhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhhHHHHHHHHHH--------hCcchhhhHHHHHHHHHH
Confidence 456677788888888888888889999999999999999999988777654321 588889999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCC
Q 017950 154 ATLGLQILFESGRELFTEAQP 174 (363)
Q Consensus 154 ~~~~~~i~~esi~~l~~~~~~ 174 (363)
+..++.++++++..|++..++
T Consensus 193 ~~~~~~l~~~s~~~Ll~~~~~ 213 (306)
T 3j1z_P 193 GQQAFDLGYRSIQALLDRELD 213 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHhCcccc
Confidence 999999999999999976643
No 7
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=69.69 E-value=19 Score=26.95 Aligned_cols=47 Identities=28% Similarity=0.456 Sum_probs=33.3
Q ss_pred EEEEEEeCC-CCCHHHHHHHHHHHHHHHhcCCCccEEEEEEeeCCCCCCC
Q 017950 309 VEADVVLPA-EMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNATHQLE 357 (363)
Q Consensus 309 v~v~I~~~~-~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~~~~~~~ 357 (363)
|.+.+.++. ..+. ...+.+.+++.++++|++..+.|.+..+..=.|+
T Consensus 43 V~v~l~lt~~~cp~--~~~l~~~i~~al~~l~gv~~V~V~l~~~p~W~~~ 90 (103)
T 3cq1_A 43 AYVRMTLTTPGCPL--HDSLGEAVRQALSRLPGVEEVEVEVTFEPPWTLA 90 (103)
T ss_dssp EEEEECCSSSSCCS--SCHHHHHHHHHHHTSTTCCEEEEEECCSSCCCGG
T ss_pred EEEEEEECCCCCcH--HHHHHHHHHHHHHhCCCceeEEEEEecCCCCChH
Confidence 444444432 3343 5678899999999999999999998877655443
No 8
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=69.48 E-value=11 Score=26.76 Aligned_cols=67 Identities=16% Similarity=0.290 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCCccccceeEEEEecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEeeCCCCCC
Q 017950 278 LAKLTYLIWNHHEEIKYIETVRAYNFGCQ-YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNATHQL 356 (363)
Q Consensus 278 ~~~I~~~~~~~~~~V~~v~~v~~~~~G~~-~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~~~~~~ 356 (363)
.+++.+.+. ..|+|.+++.+ .|+. +.+.+.. ++ .+ ++.+-+.++|.++|+|.++...+-....|+.
T Consensus 15 ~~~~~~~l~-~~peV~e~~~v----tG~~D~ll~v~~---~d--~~---~l~~~i~~~l~~~~gV~~~~T~ivl~~~~~~ 81 (83)
T 2cvi_A 15 EREVMEKLL-AMPEVKEAYVV----YGEYDLIVKVET---DT--LK---DLDQFITEKIRKMPEIQMTSTMIAILEHHHH 81 (83)
T ss_dssp HHHHHHHHH-TSTTEEEEEEC----BSSCSEEEEEEE---SS--HH---HHHHHHHTTGGGCTTEEEEEEEEEEEETTTT
T ss_pred HHHHHHHHh-CCCCeeEEEEE----cccCCEEEEEEE---CC--HH---HHHHHHHHHhccCCCEeEEEEEEEEehhccc
Confidence 456777775 47888766443 3665 6666555 32 23 3444455678889999988888777655544
Q ss_pred C
Q 017950 357 E 357 (363)
Q Consensus 357 ~ 357 (363)
.
T Consensus 82 ~ 82 (83)
T 2cvi_A 82 H 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 9
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=54.81 E-value=20 Score=26.75 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEEEeeCCCCCCC
Q 017950 324 AHNIGESLQEKLEQLPEVERAFVHVDFNATHQLE 357 (363)
Q Consensus 324 ~h~i~~~l~~~l~~~~~v~~v~Vhid~~~~~~~~ 357 (363)
...+.+.+++.++++|++..+.|.+..+..=.|+
T Consensus 58 ~~~l~~~i~~al~~l~gv~~v~V~l~~~p~W~~~ 91 (103)
T 1uwd_A 58 AGMILSDAEEAIKKIEGVNNVEVELTFDPPWTPE 91 (103)
T ss_dssp HHHHHHHHHHHHHTSSSCCEEEEEECCSSCCCGG
T ss_pred HHHHHHHHHHHHHhCCCcceEEEEEecCCCCChH
Confidence 5788999999999999999999998777654444
No 10
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=48.85 E-value=24 Score=26.68 Aligned_cols=48 Identities=21% Similarity=0.260 Sum_probs=34.8
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHH-hcCCCccEEEEEEeeCCCCCCC
Q 017950 307 YFVEADVVLPAEMSLSEAHNIGESLQEKL-EQLPEVERAFVHVDFNATHQLE 357 (363)
Q Consensus 307 ~~v~v~I~~~~~~~l~~~h~i~~~l~~~l-~~~~~v~~v~Vhid~~~~~~~~ 357 (363)
+.+++.+..+. .+. ...+.+.+++++ +++|++..+.|.+..++.=.|+
T Consensus 46 V~V~ltlt~p~-cp~--~~~i~~~i~~al~~~l~Gv~~V~V~l~~~p~W~~~ 94 (108)
T 3lno_A 46 AVITMTMTSIG-CPM--AGQIVSDVKKVLSTNVPEVNEIEVNVVWNPPWSKE 94 (108)
T ss_dssp EEEEECCSCTT-CTT--HHHHHHHHHHHHHHHCTTCCCEEEEECCSSCCCGG
T ss_pred EEEEEEECCCC-CcH--HHHHHHHHHHHHHHhCCCCceEEEEEEecCCCChH
Confidence 55544444433 443 468899999999 8899999999999887765554
No 11
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=48.23 E-value=65 Score=26.31 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=38.4
Q ss_pred cccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh
Q 017950 293 KYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLE 336 (363)
Q Consensus 293 ~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~ 336 (363)
..+.++....-|.+..+.+.|.=+..++++++.++++.+...|.
T Consensus 26 ~eLvdve~~~~g~~~~LrV~ID~~~gi~lddC~~vSr~is~~LD 69 (164)
T 1ib8_A 26 FELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLD 69 (164)
T ss_dssp SEEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTT
T ss_pred cEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 46778888888888888888887888999999999999999998
No 12
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=45.52 E-value=77 Score=24.83 Aligned_cols=66 Identities=17% Similarity=0.106 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCccccceeEEEEecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEe
Q 017950 272 TAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQ-YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVD 349 (363)
Q Consensus 272 s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~-~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid 349 (363)
..+++..+++.+.+. ..|+|..++.+ .|+. +.+.+... + +. .++.+-+.++|.+.|+|.++..++-
T Consensus 76 ~~~~~~~~~~~~~l~-~~peV~~~~~v----tG~~d~~~~v~~~--~--d~---~~l~~~~~~~l~~~~gV~~~~t~iv 142 (151)
T 2dbb_A 76 SKVPSDADKVISEIS-DIEYVKSVEKG----VGRYNIIVRLLLP--K--DI---KDAENLISEFLQRIKNAENVEVILI 142 (151)
T ss_dssp ESSHHHHHHHHHHHT-TCTTEEEEEEE----ESSCSEEEEEEEE--S--SH---HHHHHHHHHHHHTCCSEEEEEEEEE
T ss_pred EeCCCCHHHHHHHHH-cCCCeEEEeEe----cCCCCEEEEEEEc--C--CH---HHHHHHHHHHhhcCCCeeEEEEEEE
Confidence 456666678888774 47887776644 4665 55555442 2 22 3344445577788999987665553
No 13
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=39.31 E-value=87 Score=23.17 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=52.3
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 017950 267 SLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQ 337 (363)
Q Consensus 267 ~L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~ 337 (363)
.++.-.+|++..+++.+.+. ..+.|..+-.+++-. --.-|+-+.++|+++-++...+.++++..|.+
T Consensus 8 ~~~~~~a~~~~v~eler~~r-~~e~vlR~l~v~~e~---Mr~YE~m~Il~P~l~ee~~~~~ve~~~~iI~~ 74 (96)
T 2kjw_A 8 LWYQVEMPEDRVNDLARELR-IRDNVRRVMVVASTT---PGRYEVNIVLNPNLDQSQLALEKEIIQRALEN 74 (96)
T ss_dssp EEECCCCCHHHHHHHHHHHH-HCTTCSEEEEEECSS---SSCEEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecChhHHHHHHHHhc-cchhhhhhhheehhh---hhhhheeeeeCCCCCHHHHHHHHHHHHHHHHh
Confidence 35667889999999999994 678887776666542 12345667789999999999999999999975
No 14
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=36.93 E-value=56 Score=22.59 Aligned_cols=60 Identities=13% Similarity=0.275 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCCccccceeEEEEecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEee
Q 017950 278 LAKLTYLIWNHHEEIKYIETVRAYNFGCQ-YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDF 350 (363)
Q Consensus 278 ~~~I~~~~~~~~~~V~~v~~v~~~~~G~~-~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~ 350 (363)
.+++.+.+. ..|+|.+++.+ .|+. +.+.+. ++ +.+ ++.+-+.+.|.+.|+|.++..++--
T Consensus 15 ~~~~~~~l~-~~peV~~~~~v----tG~~d~l~~v~--~~---d~~---~l~~~~~~~l~~~~gV~~~~t~ivl 75 (83)
T 2zbc_A 15 EDEVFERLK-SMSEVTEVHVV----YGVYDIVVKVE--AD---SMD---KLKDFVTNTIRKLPKVRSTLTMIIV 75 (83)
T ss_dssp HHHHHHHHT-TCTTEEEEEEC----SSSCSEEEEEE--CS---SHH---HHHHHHHHTGGGSTTEEEEEEEECC
T ss_pred HHHHHHHHh-CCCCeEEEEEE----eccCCEEEEEE--EC---CHH---HHHHHHHHHhcCCCCEeEEEEEEEE
Confidence 466777674 47877666433 2554 555444 32 223 3344455678889999887776643
No 15
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=36.12 E-value=1.2e+02 Score=22.93 Aligned_cols=62 Identities=18% Similarity=0.089 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccE
Q 017950 274 PAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVER 343 (363)
Q Consensus 274 ~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~ 343 (363)
.+++.+.|..++.++.|+-..+ ..|.-+-|....+.+.|.+.. .+-.+.+.+.|.+.|+|..
T Consensus 46 ~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~S-------~eQv~aiY~~L~~~~~Vkm 107 (109)
T 1rwu_A 46 LPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINATH-------IEQVETLYEELGKIDIVRM 107 (109)
T ss_dssp CTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCSS-------HHHHHHHHHHHSCSSSCEE
T ss_pred cHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEECC-------HHHHHHHHHHHhcCCCEEE
Confidence 5678889999998887741222 444444455566777766542 2345677788888887753
No 16
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=35.22 E-value=1.1e+02 Score=21.58 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=47.7
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 017950 268 LIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQ 337 (363)
Q Consensus 268 L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~ 337 (363)
|+.-.++++..+++.+.+. ..+.|...-.+| ....-.-|+-+.++|+++-++.....++++..|++
T Consensus 9 l~~~~a~~~~i~Eler~~r-ine~VlR~l~vr---~d~~r~YE~m~Il~P~l~ee~~~~~vek~~~~i~~ 74 (77)
T 3zzp_A 9 WYQVEMPEDRVNDLARELR-IRDNVRRVMVVA---STTPGRYEVNIVLNPNLDQSQLQNEKEIIQRALEN 74 (77)
T ss_dssp EEEEECCHHHHHHHHHHHH-TSTTEEEEEEEE---CSSTTEEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHhHHHHHHHHhC-CCHHHHHHHHHh---ccCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 4455678999999999994 577775443333 23333456677889999988889999999988864
No 17
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=35.20 E-value=2e+02 Score=30.56 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc--------------CCCCCHHHHHHHHHHHHhcCCCccccceeEEEEecCeEE
Q 017950 243 PIGAILIALYTMGNWGNTVMENVWSLI--------------GRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYF 308 (363)
Q Consensus 243 ~i~aiii~~~i~~~~~~~~~e~~~~L~--------------g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~ 308 (363)
|+..+++++.++..++..+..--..+. ..+.+++..+++.+-+++...++.++++++.....++..
T Consensus 9 ~~~~~~~~~~l~~~g~~~~~~l~~~~~P~~~~~~v~V~~~~pgas~~~ve~~vt~~iE~~l~~~~~v~~i~s~s~~~g~~ 88 (1057)
T 4dx5_A 9 PIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTV 88 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCBCSSCCCSCCEEEEEEECTTCCHHHHHHHTHHHHHHTCCSCTTEEEEEEEEETTSEE
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCHhhCCCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHcCCCCcEEEEEEecCCCeE
Q ss_pred EEEEEEeCCCCCHHHH-HHHHHHHHHHHhcCC
Q 017950 309 VEADVVLPAEMSLSEA-HNIGESLQEKLEQLP 339 (363)
Q Consensus 309 v~v~I~~~~~~~l~~~-h~i~~~l~~~l~~~~ 339 (363)
.+.+.++.+.+...+ .++.+++++...++|
T Consensus 89 -~i~v~~~~~~d~~~a~~~v~~~~~~~~~~lP 119 (1057)
T 4dx5_A 89 -QITLTFESGTDADIAQVQVQNKLQLAMPLLP 119 (1057)
T ss_dssp -EEEEEECTTCCHHHHHHHHHHHHHHHGGGSC
T ss_pred -EEEEEEeCCCCHHHHHHHHHHHHHHHHhhCC
No 18
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=34.35 E-value=1.2e+02 Score=22.30 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEeeCC
Q 017950 274 PAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNA 352 (363)
Q Consensus 274 ~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~~ 352 (363)
.|+..+++...+. ..|++ ++ +... |... ++-+++..+ ...++.+.+ ++|+++|+|..+.....+..
T Consensus 15 ~p~~~~~V~~~L~-~ipgv-Ei---~~~~-~~~G--kiVV~iEa~----~~~~l~~~i-~~I~~i~GVlst~lvy~~~e 80 (95)
T 2jsx_A 15 KSERISDISTQLN-AFPGC-EV---AVSD-APSG--QLIVVVEAE----DSETLIQTI-ESVRNVEGVLAVSLVYHQQE 80 (95)
T ss_dssp CTTSHHHHHHHHT-TSTTE-EE---EEEE-TTTT--EEEEEEEES----SHHHHHHHH-HHHTTSTTEEEEEESSCCCC
T ss_pred CCCCHHHHHHHHH-CCCCe-EE---EEec-CCCC--CEEEEEEeC----CHHHHHHHH-HHHhcCCCccEEeEEEEEec
Confidence 4566788888885 46776 33 2221 2111 333344333 245667777 88999999999887776544
No 19
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=31.12 E-value=1.6e+02 Score=21.77 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=12.4
Q ss_pred EEEEEEEEeCCCCCHHHHHHHH
Q 017950 307 YFVEADVVLPAEMSLSEAHNIG 328 (363)
Q Consensus 307 ~~v~v~I~~~~~~~l~~~h~i~ 328 (363)
+.|+++|.+|++|+.+++.++.
T Consensus 3 FlV~m~V~~P~~~~~~~~~~~~ 24 (96)
T 1mli_A 3 FHVKMTVKLPVDMDPAKATQLK 24 (96)
T ss_pred EEEEEEeeCCCCCCHHHHHHHH
Confidence 4455666666666655555443
No 20
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=30.59 E-value=1.2e+02 Score=23.62 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCCccccceeEEEEecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEe
Q 017950 277 YLAKLTYLIWNHHEEIKYIETVRAYNFGCQ-YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVD 349 (363)
Q Consensus 277 ~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~-~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid 349 (363)
..+++.+.+. ..|+|..++.+ .|+. +.+.+.. + +.+ ++.+-+.+.|.+.|+|.+...++-
T Consensus 81 ~~~~~~~~l~-~~peV~~~~~v----tG~~d~~~~v~~---~--d~~---~l~~~l~~~l~~~~gV~~~~t~iv 141 (152)
T 2cg4_A 81 DYPSALAKLE-SLDEVTEAYYT----TGHYSIFIKVMC---R--SID---ALQHVLINKIQTIDEIQSTETLIV 141 (152)
T ss_dssp GHHHHHHHHH-TCTTEEEEEEE----SSSCSEEEEEEE---S--CHH---HHHHHHHHTTTTSTTEEEEEEEEC
T ss_pred CHHHHHHHHh-CCcCeEEEEEE----ecccCEEEEEEE---C--CHH---HHHHHHHHHhhcCCCeeEEEEEEE
Confidence 4667777775 47888777644 4665 6666655 2 223 344455567778899987766553
No 21
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=29.91 E-value=1.8e+02 Score=23.60 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEE
Q 017950 274 PAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAF 345 (363)
Q Consensus 274 ~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~ 345 (363)
.|..+++|...+.+ .+ ..|..+.+......-...+.++++.+ .+..+++.+.|+++++|.+|.
T Consensus 13 rpGvLarIt~lfs~--rg-~NI~Sl~v~~t~d~~~sriti~V~~d------~~~leqI~kqL~Kl~dV~~V~ 75 (164)
T 2f1f_A 13 ESGALSRVIGLFSQ--RG-YNIESLTVAPTDDPTLSRMTIQTVGD------EKVLEQIEKQLHKLVDVLRVS 75 (164)
T ss_dssp CTTHHHHHHHHHHT--TT-CCCSEEEEEECSCSSEEEEEEEEESC------HHHHHHHHHHHHHSTTEEEEE
T ss_pred CCcHHHHHHHHHHH--CC-CCeeeceeeecCCCCEEEEEEEEecc------HHHHHHHHHHHcCCCCEEEEE
Confidence 45778999998854 34 36777777665532234445555543 456678888888888887654
No 22
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=27.41 E-value=80 Score=20.48 Aligned_cols=43 Identities=16% Similarity=0.027 Sum_probs=28.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHhcCC--CccEEEEEEeeCCC
Q 017950 311 ADVVLPAEMSLSEAHNIGESLQEKLEQLP--EVERAFVHVDFNAT 353 (363)
Q Consensus 311 v~I~~~~~~~l~~~h~i~~~l~~~l~~~~--~v~~v~Vhid~~~~ 353 (363)
++|.+.+..+.++-.++.+++-+.+.+.. .-+++.|.++....
T Consensus 4 i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~~ 48 (64)
T 3abf_A 4 LKVTLLEGRPPEKKRELVRRLTEMASRLLGEPYEEVRVILYEVRR 48 (64)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECG
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCH
Confidence 34444445677777888888888886422 23578888876653
No 23
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=27.15 E-value=1.1e+02 Score=20.96 Aligned_cols=30 Identities=13% Similarity=0.422 Sum_probs=18.6
Q ss_pred CCCCcchhHhhhHHHHHHHHHHHHHHHHHHH
Q 017950 133 QYPIGKNRMQPVGIVVFASIMATLGLQILFE 163 (363)
Q Consensus 133 ~~P~G~~r~E~l~~li~~~~~~~~~~~i~~e 163 (363)
.|-|-|..+. +++|+++.+++++|+.++..
T Consensus 9 pF~YDY~tLR-igGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 9 PFYYDWESLQ-LGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp GGGGGGHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred CcccchHHhe-ecchhhHHHHHHHHHHHHHc
Confidence 3444555554 46677777777777776544
No 24
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=25.60 E-value=49 Score=23.67 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcCCCccccceeEEEEecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEee
Q 017950 274 PAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQ-YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDF 350 (363)
Q Consensus 274 ~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~-~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~ 350 (363)
++...+++.+.+. ..|+|.+++.+ .|+. +.+.+.. +++ ++ +.+-+.++|.+.|+|.+...++--
T Consensus 11 ~~~~~~~~~~~l~-~~peV~~~~~v----tG~~D~ll~v~~---~d~--~~---l~~~l~~~l~~~~gV~~~~T~ivl 75 (92)
T 2djw_A 11 RGNRVQALGEAIA-ELPQVAEVYSV----TGPYDLVALVRL---KDV--EE---LDDVVTQGILSLEGVERTETLLAF 75 (92)
T ss_dssp CGGGHHHHHHHHT-TSTTEEEEEEE----SSSSSEEEEEEE---SSG--GG---HHHHCCCCCTTSTTEEEEEEEEEE
T ss_pred cCCCHHHHHHHHh-cCCCeEEEEEe----ecCCCEEEEEEE---CCH--HH---HHHHHHHhcccCCCEeEEEEEEEE
Confidence 3344567777774 47887766443 2665 6666555 333 22 222334456678999876655543
No 25
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=24.30 E-value=2.1e+02 Score=20.85 Aligned_cols=63 Identities=22% Similarity=0.098 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCCccccceeEEEEecCe-EEEEEEEEeCCC-C-CHHHHHHHHHHHHHHHhcCCCccEEEEE
Q 017950 278 LAKLTYLIWNHHEEIKYIETVRAYNFGCQ-YFVEADVVLPAE-M-SLSEAHNIGESLQEKLEQLPEVERAFVH 347 (363)
Q Consensus 278 ~~~I~~~~~~~~~~V~~v~~v~~~~~G~~-~~v~v~I~~~~~-~-~l~~~h~i~~~l~~~l~~~~~v~~v~Vh 347 (363)
++++.+.+.+..+.-......+.--.|-+ ..+.+.++++.+ - + .+.+++.++++++|+.+.|.
T Consensus 21 l~~L~~~vk~~~~~gl~w~~~k~~pIafGlk~L~i~~vveD~~~~~-------tD~lee~i~~~e~VqSvdV~ 86 (91)
T 2yy3_A 21 LDELEEKLKKVIPEKYGLAKVEREPIAFGLVALKFYVLGRDEEGYS-------FDEVAEKFEEVENVESAEVE 86 (91)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEEEECTTSCEEEEEEEEECSSTTCC-------HHHHHHHHHHSTTEEEEEEE
T ss_pred HHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEECCCccc-------cHHHHHHHhcCCCceEEEEE
Confidence 33444444333455567788888888999 788899988654 2 2 35677778777788877653
No 26
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 2.08A {Picrophilus torridus} SCOP: d.316.1.1
Probab=24.13 E-value=58 Score=25.21 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhcCCCccEEEEEEeeCC
Q 017950 322 SEAHNIGESLQEKLEQLPEVERAFVHVDFNA 352 (363)
Q Consensus 322 ~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~~ 352 (363)
+.++-+.+.+++.++..|.++++.|+++ +.
T Consensus 41 eta~sLE~AIE~si~~QP~v~~v~V~I~-d~ 70 (121)
T 2i52_A 41 ENASMAEEFIERSTMIQPFVENVRISIN-NV 70 (121)
T ss_dssp TTHHHHHHHHHHHHTTSTTEEEEEEEEC-CC
T ss_pred ccHHHHHHHHHHHHhcCCceEEEEEEEe-hh
Confidence 3466677888899988999999999998 54
No 27
>2c5k_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae}
Probab=23.80 E-value=22 Score=19.54 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=9.1
Q ss_pred hhhchhHHHHHHHHH
Q 017950 25 RRHRKIAGYYKRQEK 39 (363)
Q Consensus 25 ~~~~~~~~~y~~q~~ 39 (363)
.|.+.+++||+-+++
T Consensus 11 dKR~lLkeyY~L~~~ 25 (26)
T 2c5k_P 11 DRRLLLREFYNLENX 25 (26)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhhhcc
Confidence 345688999987654
No 28
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=22.47 E-value=1.9e+02 Score=21.03 Aligned_cols=63 Identities=16% Similarity=0.027 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCCccccceeEEEEecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEE
Q 017950 279 AKLTYLIWNHHEEIKYIETVRAYNFGCQ-YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVH 347 (363)
Q Consensus 279 ~~I~~~~~~~~~~V~~v~~v~~~~~G~~-~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vh 347 (363)
+++.+.+.+..+.-......+.--.|-+ ..+.+.++++.+- . -.+.+++.++++++|+.+.|.
T Consensus 20 ~~L~~~vk~~~~~gl~w~~~k~~piafGlk~L~i~~vveD~~-~-----~td~lee~i~~~e~Vqsvdv~ 83 (89)
T 1gh8_A 20 EALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAE-G-----GTEAAEESLSGIEGVSNIEVT 83 (89)
T ss_dssp HHHHHHHHHHSCTTSEECCCCEEECSSSCEEEEEEEEESSSC-G-----GGGHHHHHHTTSCSSEEEEEE
T ss_pred HHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEEcCC-c-----ChHHHHHHHhccCCccEEEEE
Confidence 3333333333344456777888888888 7888889885532 1 136778888888888877653
No 29
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=21.44 E-value=1.9e+02 Score=23.57 Aligned_cols=63 Identities=19% Similarity=0.174 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEE
Q 017950 274 PAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAF 345 (363)
Q Consensus 274 ~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~ 345 (363)
.|..+++|...+.+. + ..|..+.+......-...+.+.++.+ .+..+++.+.++++++|.+|.
T Consensus 14 rpGvL~rI~~lfs~r--g-~NI~Sl~v~~t~d~g~sritivV~~d------~~~leql~kQL~Kl~dV~~V~ 76 (165)
T 2pc6_A 14 EAGALSRVAGLFSAR--G-YNIESLSVAPTEDPTLSRMTLVTNGP------DEIVEQITKQLNKLIEVVKLI 76 (165)
T ss_dssp STTHHHHHHHHHHHH--T-CCCCEEEEEECSSTTEEEEEEEEEEC------HHHHHHHHHHHHHSTTEEEEE
T ss_pred CCcHHHHHHHHHHHC--C-CcEEEEEEEecCCCCEEEEEEEEecc------HHHHHHHHHHhcCCCCEEEEE
Confidence 456789999988653 3 35777777655432233444555433 456788888888899987654
No 30
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.14 E-value=1.9e+02 Score=22.50 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHhcCCCccccceeEEEEecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEeeC
Q 017950 273 APAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQ-YFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFN 351 (363)
Q Consensus 273 ~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~-~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~ 351 (363)
.+++..+++.+.+. ..|+|..++.+ .|+. +.+.++. + +.++ +.+-+ ++|.+.|+|.++..++--.
T Consensus 75 ~~~~~~~~~~~~l~-~~p~V~~~~~~----tG~~d~~~~v~~---~--d~~~---l~~~~-~~l~~~~gV~~~~t~ivl~ 140 (151)
T 2cyy_A 75 VKAGKYSEVASNLA-KYPEIVEVYET----TGDYDMVVKIRT---K--NSEE---LNNFL-DLIGSIPGVEGTHTMIVLK 140 (151)
T ss_dssp ECTTCHHHHHHHHH-TCTTEEEEEEC----SSSSSEEEEEEE---S--SHHH---HHHHH-HHHHTSTTEEEEEEEECCC
T ss_pred ECcccHHHHHHHHh-cCCCeeEeeEe----cCCCCEEEEEEE---C--CHHH---HHHHH-HHHhCCCCEeEEEEEEEEE
Confidence 34555678888775 47888766543 3655 6666555 2 3333 33444 6778889998877766543
No 31
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, prote structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=20.46 E-value=76 Score=24.54 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhcCCCccEEEEEEe
Q 017950 322 SEAHNIGESLQEKLEQLPEVERAFVHVD 349 (363)
Q Consensus 322 ~~~h~i~~~l~~~l~~~~~v~~v~Vhid 349 (363)
+.++-+.+.+++.++..|.++++.|+++
T Consensus 46 eta~sLE~AIE~si~~QP~v~~v~V~I~ 73 (122)
T 2ogf_A 46 YNKESLERAIEEAMKNQPCVYDIKVKIR 73 (122)
T ss_dssp TTHHHHHHHHHHHHHTSTTEEEEEEEEC
T ss_pred ccHHHHHHHHHHHHhcCCceEEEEEEEe
Confidence 3466777889999998999999999998
No 32
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.07 E-value=58 Score=19.72 Aligned_cols=21 Identities=10% Similarity=0.313 Sum_probs=11.8
Q ss_pred CCchhhHHHHhhhhhchhHHHHHH
Q 017950 13 SHLSIGYYIKTLRRHRKIAGYYKR 36 (363)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~y~~ 36 (363)
++-.|..|-+++ |++++||++
T Consensus 8 g~~~f~~FY~rl---k~Ike~Hrr 28 (38)
T 2dt7_A 8 GPNEFAEFYNRL---KQIKEFHRK 28 (38)
T ss_dssp SCCHHHHHHHHH---HHHHHHHHS
T ss_pred CCcHHHHHHHHH---HHHHHHHHh
Confidence 344555566555 555666654
Done!