RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017950
(363 letters)
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
cell inner membrane, cell membrane, ION transport, iron
transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Length = 283
Score = 152 bits (387), Expect = 4e-44
Identities = 48/282 (17%), Positives = 117/282 (41%), Gaps = 11/282 (3%)
Query: 73 RVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFI-LWFTAYAMKKPNQ 131
A A+ A +L L K++A + S++++A+ +DSL+D+ + L Y+++ +
Sbjct: 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADD 62
Query: 132 YQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSV 191
+ G + + + + + ++ L + + L + + + +
Sbjct: 63 -NHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPG----VGVIVTIVA 117
Query: 192 TVVKLALMMYC----RRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAI 247
+ + L+ + RR +++ VRA + DV+ N L L+ + D + A+
Sbjct: 118 LICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFAL 177
Query: 248 LIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQY 307
I +Y + + E V SL+ R P E ++ ++ + +R G
Sbjct: 178 GIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPTR 236
Query: 308 FVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVD 349
F++ + + + L +AH + + +++ + + +H D
Sbjct: 237 FIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQD 278
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator
(CDF), transporter, zinc, membrane protein, cytosolic
domain; 2.84A {Thermotoga maritima}
Length = 107
Score = 60.1 bits (146), Expect = 1e-11
Identities = 14/78 (17%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 273 APAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQ 332
+ + ++ + VR G +YF+E D+ + +MS+ +AH + ++
Sbjct: 7 TELDMYDDIFAVL-ERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIR 65
Query: 333 EKL-EQLPEVERAFVHVD 349
+++ ++ ++E +HV+
Sbjct: 66 KEMLKRRDDIEDVTIHVE 83
>3byp_A CZRB protein; membrane protein, zinc transporter, transport
protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1
PDB: 3byr_A
Length = 94
Score = 58.9 bits (143), Expect = 2e-11
Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 268 LIGRTAPAEYLAKLTYLIWNHHE-EIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHN 326
L+ P E + ++ + + ++ G + F+E +V+ + + EAH
Sbjct: 2 LMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHR 61
Query: 327 IGESLQEKLEQLPEVERAFVHVD 349
+ + L+ L Q +A +HV+
Sbjct: 62 LCDELERALAQAFPGLQATIHVE 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 9e-05
Identities = 52/403 (12%), Positives = 126/403 (31%), Gaps = 129/403 (32%)
Query: 5 HLPERRMDSHLSIGYYIKTLRRHRKIAGYYKRQEKLLKGYNEVDTFTELGILPGSLTQEE 64
H MD Y +++ I + ++ + ++ D + L++EE
Sbjct: 1 HHHHHHMDFETGEHQY-----QYKDILSVF--EDAFVDNFDCKDV---QDMPKSILSKEE 50
Query: 65 MKQLAKNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFIL--WFT 122
+ + + +A + L L + + S+ ++ ++ +L + F++ T
Sbjct: 51 IDHIIM-------SKDAVSGTLRL---FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 123 AYAMKKPNQYQYPIGKNRMQPVGIVVFASIMAT---LGLQILFESGRELFTEAQPERDPE 179
Y ++R+ VFA + L++ R+ E +P
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDN-QVFAKYNVSRLQPYLKL-----RQALLELRPA---- 150
Query: 180 KEKW-----MIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLA 234
K ++G + +AL ++ +Y D I
Sbjct: 151 --KNVLIDGVLGSGKTW----VAL---------DVCLSYKVQCKMD---FKI-------- 184
Query: 235 IKFYWWIDPIGAILIALYTMGNWG--NTVMENVWSLIGR-----TAPAEYLAKLTYLIWN 287
+W+ + N TV+E + L+ + T+ +++ + + I +
Sbjct: 185 ----FWL-----------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 288 HHEEIKYI-------------------ETVRAYNFGCQYFV------EADVVLPAEMS-- 320
E++ + + A+N C+ + D + A +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 321 LSEAHNIGESLQEKLEQLPEVERAFVHVDFNATHQLEHKPKKL 363
+ H++ + E L + L+ +P+ L
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKY--------------LDCRPQDL 318
Score = 37.5 bits (86), Expect = 0.007
Identities = 16/176 (9%), Positives = 47/176 (26%), Gaps = 43/176 (24%)
Query: 1 MDRFHLPERRMDSH-LSIGYYIKTLRRHRKIAGYYKR--QEKLLK----GYNEVDT---- 49
LP + ++ + +++R +K +KL N ++
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 50 --FTELGILP---------------GSLTQEEMKQLAKNERVAIYASNAANLVLFLAKVY 92
F L + P + + M + K + ++ + + +Y
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 93 --ASAESRSLAVIASTL-------------DSLLDLLSGFILWFTAYAMKKPNQYQ 133
+ + + ++ D + L + + +K +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.080
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 14/42 (33%)
Query: 64 EMKQLAKNERVAIYASNAANLVLFLAKVYASAESRSLAVIAS 105
E + L K + A+L K+YA + +LA+ A+
Sbjct: 18 EKQALKKLQ---------ASL-----KLYADDSAPALAIKAT 45
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 30.9 bits (71), Expect = 0.10
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFNAT 353
HN+ E E Q V F H FN +
Sbjct: 53 RHNLFE--NENTAQFFGVTADFPHPGFNLS 80
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.14
Identities = 42/243 (17%), Positives = 81/243 (33%), Gaps = 66/243 (27%)
Query: 37 QEKLLKGYNEVDTFTELGILPGSLTQEEMKQLAKNERVA-IY--ASNAANLV-------- 85
+ L+G N++ L QE L K + + Y A A
Sbjct: 92 ENCYLEG-NDIHALA------AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 86 LFLAKVYASAESRSLAVI-------ASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGK 138
LF A + L I + L DL + Y +
Sbjct: 145 LFRA---VGEGNAQLVAIFGGQGNTDDYFEELRDL-------YQTYH---------VLVG 185
Query: 139 NRMQPVGIVVFASIMATLGLQILFESGRELFT-EAQPERDPEKEKWMIGIMVS---VTVV 194
+ ++ + I TL + +F G + P P+K+ +++ I +S + V+
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD-YLLSIPISCPLIGVI 244
Query: 195 KLA-LMMYCRR--FKNEIVRAYAQ---DHFFDVITNSIGLATA----------LLAIKFY 238
+LA ++ + F +R+Y + H ++T ++ +A AI
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT-AVAIAETDSWESFFVSVRKAITVL 303
Query: 239 WWI 241
++I
Sbjct: 304 FFI 306
Score = 32.3 bits (73), Expect = 0.26
Identities = 35/181 (19%), Positives = 53/181 (29%), Gaps = 57/181 (31%)
Query: 60 LTQEEM--------KQLAKNERVAIYASNAA-NLVLFLAKVYASAESRSLAVIASTLDSL 110
LTQE++ L ++V I N A NLV+ S +SL
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV-------SGPPQSLY--------- 387
Query: 111 LDLLSGFILWF-TAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELF 169
G L A A +Q + P + R + F + + F S L
Sbjct: 388 -----GLNLTLRKAKAPSGLDQSRIPFSE-R-KLKFSNRFLPVASP------FHS--HLL 432
Query: 170 TEAQPERDPEKEKWMIGIMVSVTVVKLALMMYC-------RRFKNEIVRAYAQDHFFDVI 222
A + K ++ VS + + +Y R I D I
Sbjct: 433 VPASDLIN----KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV-----DCI 483
Query: 223 T 223
Sbjct: 484 I 484
Score = 29.2 bits (65), Expect = 2.6
Identities = 38/220 (17%), Positives = 56/220 (25%), Gaps = 85/220 (38%)
Query: 167 EL------FTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRRF--KNEIVRAYAQDHF 218
EL + + E + V+ L L + + N+I H
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQ--------FDQVLNLCLTEFENCYLEGNDI-------HA 103
Query: 219 FDV---ITNSIGLATALLAIKFYWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPA 275
N L IK Y I A ++A N S + R
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNY-----ITARIMAKRPFDKKSN-------SALFRAVGE 151
Query: 276 EYLAKLTYLIWNHHEEIKYIETVRAYNFGCQ-----YFVEADVVLPAEMSLSEAHNI--- 327
A+L I FG Q YF E L + +
Sbjct: 152 GN-AQL-VAI-----------------FGGQGNTDDYFEE----------LRDLYQTYHV 182
Query: 328 ---------GESLQEKLEQLPEVERAFVHVDFNATHQLEH 358
E+L E + + E+ F N LE+
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQG-LNILEWLEN 221
Score = 28.1 bits (62), Expect = 6.4
Identities = 34/189 (17%), Positives = 56/189 (29%), Gaps = 80/189 (42%)
Query: 5 HLPERRMDSHLSI------------GY------YIKTLRRHRKIAG-------YYKRQEK 39
HLP + I G TLR+ + +G + +R+ K
Sbjct: 359 HLPA---GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 40 ---------------LLKGYNEV----------------------DTFT--ELGILPGSL 60
LL +++ DTF +L +L GS+
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 61 TQEEMKQLAKNERV---AIYASNAANLVLF-------LAK-VYASAESRSLAVI-ASTLD 108
+ E + V A +++ F L + + + + VI A TLD
Sbjct: 476 S-ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLD 534
Query: 109 SLLDLLSGF 117
D GF
Sbjct: 535 INPDDDYGF 543
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 30.9 bits (71), Expect = 0.52
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFN 351
AHNI E +E Q EV + F H +N
Sbjct: 57 AHNITE--EEDTWQKLEVIKQFRHPKYN 82
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 30.6 bits (70), Expect = 0.55
Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFN 351
AH++ + +E +Q +VE+ +H +N
Sbjct: 57 AHDVRK--RESTQQKIKVEKQIIHESYN 82
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 30.6 bits (70), Expect = 0.61
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFN 351
AHNI +E +Q RA H +N
Sbjct: 56 AHNIQR--RENTQQHITARRAIRHPQYN 81
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 30.6 bits (70), Expect = 0.64
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFN 351
AHNI E +E+ +Q+ V R H D+N
Sbjct: 56 AHNIME--RERTQQVIPVRRPIPHPDYN 81
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 30.6 bits (70), Expect = 0.64
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFN 351
AHNI E QE +Q V+R H +N
Sbjct: 56 AHNIKE--QEPTQQFIPVKRPIPHPAYN 81
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 30.3 bits (69), Expect = 0.73
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFNATHQLEHKPK 361
HN+ S E Q +V +F+ F+ + + +
Sbjct: 53 RHNL--SKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLR 88
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 30.2 bits (69), Expect = 0.76
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFN 351
AHNI +E+ +Q+ V +A H D+N
Sbjct: 57 AHNIKA--KEETQQIIPVAKAIPHPDYN 82
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding,
chromatin regulator, cytoplasm, hydrolase,
metal-binding, nucleus, phosphoprotein; 1.55A {Homo
sapiens} PDB: 3gv4_A 3phd_A
Length = 109
Score = 29.2 bits (65), Expect = 0.78
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 288 HHEEIKY-----IETVRAYNFGCQYFVEADVVLPAEMSLSEAH 325
HH + + A+ + CQ +V +L + +
Sbjct: 58 HHGNSGHPLVLSYIDLSAWCYYCQAYVHHQALLDVKNIAHQNK 100
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices,
oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas
stutzeri}
Length = 311
Score = 30.0 bits (67), Expect = 0.99
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 3/99 (3%)
Query: 183 WMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWID 242
++ + + V L+ R+ ++ H FD I L F +I
Sbjct: 8 YIALLTLGTIVALFWLIFATRKGESAGTTDQTMGHAFDGIEE---YDNPLPRWWFLLFIG 64
Query: 243 PIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKL 281
+ ++ L GN G T ++ ++
Sbjct: 65 TLVFGILYLVLYPGLGNWKGVLPGYEGGWTQEKQWEREV 103
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 29.5 bits (67), Expect = 1.3
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 10/44 (22%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFNA-TH-------QLEHK 359
AH+I + +E +Q+ V++ F + ++ T QL K
Sbjct: 54 AHSI--TREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEK 95
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 28.7 bits (65), Expect = 2.2
Identities = 2/28 (7%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFN 351
A+++ +E+ + + ++
Sbjct: 57 AYDL--RRRERQSRQTFSISSMSENGYD 82
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 28.7 bits (65), Expect = 2.6
Identities = 7/35 (20%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFNATHQLEH 358
H++ +++ EQ +V ++ H +N ++ +H
Sbjct: 53 DHSLQS--RDQPEQEIQVAQSIQHPCYNNSNPEDH 85
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 28.6 bits (65), Expect = 2.7
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFNAT 353
H++ E+ QE Q+ E + H ++N
Sbjct: 53 LHSL-EADQEPGSQMVEASLSVRHPEYNRP 81
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 28.3 bits (64), Expect = 3.2
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFNATHQLEHKPKK 362
+N+ + E Q V ++F H D+ +
Sbjct: 51 RNNLFK--DEPFAQRRLVRQSFRHPDYIPLIVTNDTEQP 87
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 28.3 bits (64), Expect = 3.3
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFN 351
AH++ S E ++L +V RA H D
Sbjct: 57 AHSL--SQPEPSKRLYDVLRAVPHPDSQ 82
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 28.3 bits (64), Expect = 3.6
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFN 351
AH++ S E +Q E+++
Sbjct: 60 AHSL--SKNEASKQTLEIKKFIPFSRVT 85
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 28.3 bits (64), Expect = 3.7
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFN 351
HN+ E Q V +F H FN
Sbjct: 53 RHNL--FDDENTAQFVHVSESFPHPGFN 78
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A
3kso_A 3kss_A
Length = 1054
Score = 28.7 bits (65), Expect = 3.8
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 313 VVLPAEMSLSEAHNIGESLQEKLEQLPEVERAF 345
+S +EA ++ + + + +PEV R F
Sbjct: 581 PSTLPGISAAEAASMLQKTDKLIMSVPEVARVF 613
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 27.9 bits (63), Expect = 4.9
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFNAT 353
HN+ +E ++ V RA +H D++A
Sbjct: 53 KHNL--RQRESSQEQSSVVRAVIHPDYDAA 80
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 27.6 bits (62), Expect = 5.6
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFN 351
H++ E Q+ +V +F H ++
Sbjct: 53 RHSL--FHPEDTGQVFQVSHSFPHPLYD 78
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 27.5 bits (62), Expect = 5.7
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFN 351
AHN+ QE +Q V + F++ +++
Sbjct: 60 AHNVRT--QEPTQQHFSVAQVFLN-NYD 84
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 27.2 bits (61), Expect = 7.5
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFNATHQLEHKPK 361
+N E +Q V +A H DFN + EH P+
Sbjct: 56 KNNF--LEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQ 91
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 27.1 bits (61), Expect = 7.9
Identities = 3/30 (10%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 324 AHNIGESLQEKLEQLPEVERAFVHVDFNAT 353
+++ + E +Q+ + ++ H ++
Sbjct: 54 HYSLSP-VYESGQQMFQGVKSIPHPGYSHP 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.405
Gapped
Lambda K H
0.267 0.0826 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,690,921
Number of extensions: 343376
Number of successful extensions: 958
Number of sequences better than 10.0: 1
Number of HSP's gapped: 942
Number of HSP's successfully gapped: 37
Length of query: 363
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 268
Effective length of database: 4,049,298
Effective search space: 1085211864
Effective search space used: 1085211864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (25.9 bits)