RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 017950
(363 letters)
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
{Escherichia coli [TaxId: 562]}
Length = 204
Score = 114 bits (286), Expect = 6e-31
Identities = 37/203 (18%), Positives = 81/203 (39%)
Query: 69 AKNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKK 128
+ A A+ A +L L K++A + S++++A+ +DSL+D+ + +
Sbjct: 2 GRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQ 61
Query: 129 PNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIM 188
P + G + + + + + ++ L + + L + I +
Sbjct: 62 PADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVAL 121
Query: 189 VSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAIL 248
+ ++ RR +++ VRA + DV+ N L L+ + D + A+
Sbjct: 122 ICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFALG 181
Query: 249 IALYTMGNWGNTVMENVWSLIGR 271
I +Y + + E V SL+ R
Sbjct: 182 IGIYILYSALRMGYEAVQSLLDR 204
>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP)
{Escherichia coli [TaxId: 562]}
Length = 82
Score = 76.7 bits (189), Expect = 2e-18
Identities = 10/77 (12%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 273 APAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQ 332
P E ++ ++ + +R G F++ + + + L +AH + + ++
Sbjct: 2 LPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVE 60
Query: 333 EKLEQLPEVERAFVHVD 349
+ + + +H D
Sbjct: 61 QAILRRFPGSDVIIHQD 77
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus
thermophilus [TaxId: 274]}
Length = 82
Score = 66.7 bits (163), Expect = 8e-15
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 274 PAEYLAKLTYLIWNHHE-EIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQ 332
P E + ++ + + ++ G + F+E +V+ + + EAH + + L+
Sbjct: 3 PPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELE 62
Query: 333 EKLEQLPEVERAFVHVD 349
L Q +A +HV+
Sbjct: 63 RALAQAFPGLQATIHVE 79
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 29.1 bits (64), Expect = 0.88
Identities = 37/302 (12%), Positives = 78/302 (25%), Gaps = 33/302 (10%)
Query: 6 LPERRMDSHLSIGYYI-KTLRRH-RKIAGYYKRQEKLLKGYNEVDTFTELGILPGSLTQE 63
P MD L++ ++ + RK G T+ E+ +
Sbjct: 2 FPSTMMDEELNLWDFLERAAALFGRKEVVSRLHT-----GEVHRTTYAEV--------YQ 48
Query: 64 EMKQLA---------KNERVAIYASNAAN-LVLFLAKVYASAESRSLAVIASTLDSLLDL 113
++L +RVA N L + A A + T + L
Sbjct: 49 RARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGA-------VLHTANPRLSP 101
Query: 114 LS-GFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEA 172
+IL + + P+ + + V +M + L EA
Sbjct: 102 KEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEA 161
Query: 173 QPERDPEKEKWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATAL 232
P R PE+ + T + ++ R + A D + + +
Sbjct: 162 DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPM 221
Query: 233 LAIKFYWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEI 292
+ + + G + + + + ++ E
Sbjct: 222 FHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST 281
Query: 293 KY 294
+
Sbjct: 282 GH 283
>d2fug32 c.81.1.1 (3:247-685) NADH-quinone oxidoreductase chain 3,
Nqo3 {Thermus thermophilus [TaxId: 274]}
Length = 439
Score = 27.7 bits (60), Expect = 2.3
Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 3/125 (2%)
Query: 196 LALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAILIALYTMG 255
L + A+ + +I + L + A + + GA ++A+
Sbjct: 234 LLGDKEGSEMVAKAKEAWEKAKNPVLILGAGVLQDTVAAERARLLAERKGAKVLAMTPAA 293
Query: 256 NWGNTVMENV---WSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEAD 312
N V P A ++ + K + + A
Sbjct: 294 NARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVVMHLSHLHPLAERYAH 353
Query: 313 VVLPA 317
VVLPA
Sbjct: 354 VVLPA 358
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Length = 509
Score = 27.8 bits (61), Expect = 2.3
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 113 LLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMA 154
L ++W Y K + + + R +G+ +F + +
Sbjct: 456 LAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLV 497
>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 99
Score = 25.1 bits (55), Expect = 6.0
Identities = 6/39 (15%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 323 EAHNIGESLQEKLEQLPEVERAFVHVDFNATHQLEHKPK 361
+ + +L E++ + +V+ A ++ H + P+
Sbjct: 22 YDNTLLRTLVEEILKDDQVDEARYYIK----HPVIDNPQ 56
>d1twfk_ d.74.3.2 (K:) RPB11 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 114
Score = 25.1 bits (55), Expect = 7.7
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 323 EAHNIGESLQEKLEQLPEVERAFVHVDFNATHQLEHKPK 361
E H +G ++ +L +V A V+ H + K
Sbjct: 38 EDHTLGNLIRAELLNDRKVLFAAYKVE----HPFFARFK 72
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 25.9 bits (56), Expect = 9.7
Identities = 38/237 (16%), Positives = 73/237 (30%), Gaps = 40/237 (16%)
Query: 39 KLLKGYNEVDTFTELGILPGSLTQEEMKQLAKNERVAIYASNAANLVLFLAKVYASAESR 98
+LL+ Y + G L L K + + SNA N VLF A
Sbjct: 255 RLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS 314
Query: 99 SLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGL 158
++ + L L + ++ + + ++ ++
Sbjct: 315 EPNLLVRACNQLGQFLQH--------------------RETNLRYLALESMCTLASSEFS 354
Query: 159 QILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRRFKNEIVR---AYAQ 215
++ E A K + V V L M R +IV +Y +
Sbjct: 355 HEAVKTHIETVINAL--------KTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLE 406
Query: 216 D---HFFDVITNSIGLATALLAIKFYWWIDPIGAILIALYTMGNWGNTVMENVWSLI 269
+ I + + A+ + W++D ++ L + G+ V E VW +
Sbjct: 407 TADYSIREEIVLKVAILAEKYAVDYTWYVD----TILNLIRIA--GDYVSEEVWYRV 457
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.405
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,367,609
Number of extensions: 62975
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 12
Length of query: 363
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,226,816
Effective search space: 339828032
Effective search space used: 339828032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)