BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>017952
MEIPLASLTSSRATTTTSLKLNGGLGRELCVSKKGTVKSGPNQMRSRSNEDIKNSDNSRF
TGSVMEVTTFDRGFGQPAASDFPVWDKIGAIVRLSYGIGIYGAMALAGRFICSITGVDSM
GGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFYGMSPW
QFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGVLPPFVPFAQAFA
AVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSPLLE
GLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKIHDHRRRLHQRIQRLELEGNDS
DRK

High Scoring Gene Products

Symbol, full name Information P value
AT2G35260 protein from Arabidopsis thaliana 9.0e-109
AT4G17840 protein from Arabidopsis thaliana 1.2e-99

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  017952
        (363 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2063484 - symbol:AT2G35260 "AT2G35260" species...  1075  9.0e-109  1
TAIR|locus:2141000 - symbol:AT4G17840 "AT4G17840" species...   989  1.2e-99   1


>TAIR|locus:2063484 [details] [associations]
            symbol:AT2G35260 "AT2G35260" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0010155 "regulation of proton transport"
            evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
            evidence=RCA] [GO:0046777 "protein autophosphorylation"
            evidence=RCA] InterPro:IPR003675 Pfam:PF02517 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0016020 EMBL:AC004667 EMBL:AF361619
            EMBL:AY081832 IPI:IPI00545114 PIR:D84766 RefSeq:NP_565802.1
            UniGene:At.24777 STRING:O82167 PaxDb:O82167 PRIDE:O82167
            EnsemblPlants:AT2G35260.1 GeneID:818093 KEGG:ath:AT2G35260
            TAIR:At2g35260 eggNOG:NOG279687 HOGENOM:HOG000005905
            InParanoid:O82167 OMA:RFICSVT PhylomeDB:O82167
            ProtClustDB:CLSN2688697 ArrayExpress:O82167 Genevestigator:O82167
            Uniprot:O82167
        Length = 382

 Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
 Identities = 202/280 (72%), Positives = 229/280 (81%)

Query:    59 RFTGSVMEVTTFDRGFGQPAASDFPVWDKIGAIVRLSYGIGIYGAMALAGRFICSITGVD 118
             RF G+ MEVTT DRGF      DFP+WDKIGA+VRL+YGIGIYGAMA+AGRFICS+TG+D
Sbjct:    81 RFAGTAMEVTTLDRGFANSTTVDFPIWDKIGAVVRLTYGIGIYGAMAVAGRFICSVTGID 140

Query:   119 SMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFYGMS 178
             S GGF PSLDA++ GLGYA PPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFF+GMS
Sbjct:   141 SSGGFDPSLDALLAGLGYATPPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFFGMS 200

Query:   179 PWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGXXXXXXXXXXX 238
             PWQF+LIVAASS+GEELFYR AVQGAL+DIFL+GT  +TD++GMASLTG           
Sbjct:   201 PWQFILIVAASSIGEELFYRVAVQGALSDIFLKGTQLMTDSRGMASLTGVFPPFVPFAEV 260

Query:   239 XXXXXXXXLTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSPX 298
                     LTGSLY++A SPKDPTY+VAPVLRSR  R+D KKL +AWYE+RQMKKIYSP 
Sbjct:   261 FAAVITATLTGSLYFLAASPKDPTYIVAPVLRSR--RDDFKKLLSAWYEKRQMKKIYSPL 318

Query:   299 XXXXXXXXXGFEWIQTNNILAPIITHGIYSAVILGHGLWK 338
                      G EW+QT+NILAP++THGIYSAVILGHGLWK
Sbjct:   319 LEGLLALYLGIEWVQTDNILAPMMTHGIYSAVILGHGLWK 358


>TAIR|locus:2141000 [details] [associations]
            symbol:AT4G17840 "AT4G17840" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0016020 "membrane" evidence=IEA]
            InterPro:IPR003675 Pfam:PF02517 EMBL:CP002687 GO:GO:0016020
            ProtClustDB:CLSN2688697 EMBL:BT026482 EMBL:AK229659 IPI:IPI00538542
            RefSeq:NP_567542.1 UniGene:At.48873 UniGene:At.63702 STRING:Q0WMZ7
            EnsemblPlants:AT4G17840.1 GeneID:827507 KEGG:ath:AT4G17840
            TAIR:At4g17840 eggNOG:NOG270359 InParanoid:Q0WMZ7 OMA:PIITHGI
            PhylomeDB:Q0WMZ7 Genevestigator:Q0WMZ7 Uniprot:Q0WMZ7
        Length = 422

 Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
 Identities = 195/303 (64%), Positives = 226/303 (74%)

Query:    37 VKSGP-NQMRSRSNEDIKNSDNSRFTGSVMEVTTFDRGFGQPAASDFPVWDKIGAIVRLS 95
             V SG    + S S+ +   + +    G   EVT+     G  +  DF  WDKIGAIVRLS
Sbjct:    97 VTSGDVTSVGSFSSGEFVGAGSGGLAGPSGEVTSVGEFVGG-SGGDFKDWDKIGAIVRLS 155

Query:    96 YGIGIYGAMALAGRFICSITGVDSMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKL 155
             YGIGIY  MA+AGRFIC + G+D  GGF+ SLD I+ GLGYA+PPIMALLFILDDEVVKL
Sbjct:   156 YGIGIYCGMAVAGRFICEVAGIDYTGGFNASLDTIIAGLGYASPPIMALLFILDDEVVKL 215

Query:   156 SPHARAIRDVEDEELRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDF 215
             SPHARAIRDVED+ELR FF GMS WQF+L+V ASSVGEELFYRAA QGALADIFLRGTD 
Sbjct:   216 SPHARAIRDVEDDELRGFFQGMSAWQFILVVTASSVGEELFYRAAFQGALADIFLRGTDL 275

Query:   216 LTDAQGMASLTGXXXXXXXXXXXXXXXXXXXLTGSLYYVATSPKDPTYVVAPVLRSRSGR 275
             ++D++GM +LTG                   LTGSLYY+A SPKDPTY++APVL++RS R
Sbjct:   276 ISDSRGMVALTGLLPPFVPFAQVFAATITAALTGSLYYIAASPKDPTYIMAPVLKTRSAR 335

Query:   276 EDLKKLFAAWYERRQMKKIYSPXXXXXXXXXXGFEWIQTNNILAPIITHGIYSAVILGHG 335
             ++LKKLFAAWYERRQMKKIYSP          GFEWIQTNN+LAPIITHGIYSAV+LG+G
Sbjct:   336 DELKKLFAAWYERRQMKKIYSPLLEGLLGLYLGFEWIQTNNLLAPIITHGIYSAVVLGNG 395

Query:   336 LWK 338
             LWK
Sbjct:   396 LWK 398


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      363       299   0.00095  115 3  11 22  0.38    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  204 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.43u 0.11s 20.54t   Elapsed:  00:00:02
  Total cpu time:  20.43u 0.11s 20.54t   Elapsed:  00:00:02
  Start:  Fri May 10 07:39:35 2013   End:  Fri May 10 07:39:37 2013

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