BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017952
         (363 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q30R95|DDL_SULDN D-alanine--D-alanine ligase OS=Sulfurimonas denitrificans (strain
           ATCC 33889 / DSM 1251) GN=ddl PE=3 SV=1
          Length = 345

 Score = 37.7 bits (86), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 102/254 (40%), Gaps = 32/254 (12%)

Query: 61  TGSVMEVTTFDRGFGQPAASDFPVWDKI----GAIVRLSYGIGIYGAMALAGRFICSITG 116
             S M  TTF RG       ++    K+    G+ V+ S    ++G++ ++G  +  I G
Sbjct: 48  NASKMRATTFSRG-------EYKKMPKLTLSHGSFVQKS----LFGSVDISGTVLNLIHG 96

Query: 117 VDSMGGFHPSLDAIVE--GLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFF 174
            D   G   ++ AI++   + Y  P + A +F  D    K   HAR ++ VE +EL S  
Sbjct: 97  GDGEDG---TIAAILDFFSIKYIGPRVDASVFSYDKRYTKWLCHARGVKCVESQELSSSE 153

Query: 175 YGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGVLPPFVP 234
           +      + +IV  S +G  +        +         D+  D+      T ++ PF+ 
Sbjct: 154 HSNIKIAYPIIVKPSRLGSSIGVSIVKDES-------KLDYALDSAFEFDNTVIVEPFLE 206

Query: 235 FAQAFAAVITAALTGSLYYVATSPKDPTYV---VAPVLRSRSGREDLKKLFAAWYE--RR 289
             + +     +A     + +   P+   ++      +  SRSG  D  ++        R 
Sbjct: 207 GVKEYNLAGFSAGKKFYFSIIEEPQKEEFLDFEKKYMDFSRSGNVDSAEISKELESKLRA 266

Query: 290 QMKKIYSPLLEGLL 303
             +K+Y  L EG L
Sbjct: 267 SFEKVYKNLFEGAL 280


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,415,012
Number of Sequences: 539616
Number of extensions: 5655293
Number of successful extensions: 13013
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13011
Number of HSP's gapped (non-prelim): 4
length of query: 363
length of database: 191,569,459
effective HSP length: 119
effective length of query: 244
effective length of database: 127,355,155
effective search space: 31074657820
effective search space used: 31074657820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)