Query 017952
Match_columns 363
No_of_seqs 16 out of 18
Neff 1.7
Searched_HMMs 29240
Date Mon Mar 25 07:33:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d9j_A RNA-binding protein 16; 43.2 18 0.0006 29.4 3.2 43 234-297 83-125 (145)
2 4fjo_A DNA repair protein REV1 37.6 21 0.00072 27.7 2.7 87 266-360 2-92 (97)
3 3b09_A Peptidyl-prolyl CIS-tra 37.2 8.4 0.00029 29.7 0.4 30 94-134 32-61 (88)
4 2km4_A Regulator of TY1 transp 37.1 9.3 0.00032 30.7 0.7 44 234-297 78-121 (142)
5 4dnd_A Syntaxin-10, SYN10; str 32.6 5.6 0.00019 32.7 -1.3 42 248-291 15-56 (130)
6 3m3g_A EPL1 protein; fungal, p 29.8 34 0.0012 28.4 2.9 34 88-132 60-94 (120)
7 2kqa_A Cerato-platanin; elicit 28.3 35 0.0012 28.9 2.7 35 87-131 65-100 (129)
8 4flb_A Regulation of nuclear P 27.7 57 0.002 25.1 3.8 41 234-297 78-118 (132)
9 3vu7_H DNA repair protein REV1 27.3 38 0.0013 27.8 2.7 88 266-361 29-120 (124)
10 3ezq_A Tumor necrosis factor r 25.5 61 0.0021 26.5 3.6 36 272-307 46-81 (115)
11 3oq9_A Tumor necrosis factor r 22.6 51 0.0018 25.4 2.6 37 271-307 37-73 (86)
12 3sum_A Cerato-platanin-like pr 20.7 61 0.0021 27.7 2.8 34 88-132 60-96 (136)
No 1
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=43.18 E-value=18 Score=29.40 Aligned_cols=43 Identities=19% Similarity=0.561 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHhcceeeeecCCCCCceEEeecccCccchHHHHHHHHHHHHHHhhhHhhhH
Q 017952 234 PFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSP 297 (363)
Q Consensus 234 PFAq~fAavltaaLTGSlYyva~spkDPtYvvaPv~~sr~~r~dlkklf~aWyErRqmkKIYSP 297 (363)
||+..|+.+|..++. .+| ..| ...|..|+|++.-|-|| ++|+|
T Consensus 83 ~f~~~F~~~L~~~f~-~~~---~~~-------------~~~r~kl~rLl~iW~~r----~vF~~ 125 (145)
T 3d9j_A 83 VFAPRFSNNIISTFQ-NLY---RCP-------------GDDKSKIVRVLNLWQKN----NVFKS 125 (145)
T ss_dssp SHHHHHHHHHHHHHH-HHT---SSC-------------GGGHHHHHHHHHHHHHT----TSSCH
T ss_pred cHHHHHHHHHHHHHH-HHH---hCC-------------HHHHHHHHHHHHHhcCC----CCCCH
Confidence 578889999998885 444 111 34589999999999986 56655
No 2
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=37.64 E-value=21 Score=27.66 Aligned_cols=87 Identities=16% Similarity=0.219 Sum_probs=49.7
Q ss_pred eecccCccchHHHHHHHHHHHHHHhhhHhhhHHHHH--HHHHHhcceeeeeCcch-hhHHHhhhhhhhh-hccccchhch
Q 017952 266 APVLRSRSGREDLKKLFAAWYERRQMKKIYSPLLEG--LLALYLGFEWIQTNNIL-APIITHGIYSAVI-LGHGLWKIHD 341 (363)
Q Consensus 266 aPv~~sr~~r~dlkklf~aWyErRqmkKIYSPLlEg--lLalYLGfEWiqT~NIL-APiiTHgiYS~Vv-lghGLwkihd 341 (363)
+|-++|++...|+|.+.++|++... .|--+- +|+-||.= =++..|+= +..+-.-+|-.|= -||--| |.
T Consensus 2 ~P~~~g~t~l~dvr~~l~~Wv~~~~-----~P~~~DV~~l~~yL~~-lv~~~~lek~~~vlk~l~rlv~~~~~~~W--~~ 73 (97)
T 4fjo_A 2 APNLAGAVEFSDVKTLLKEWITTIS-----DPMEEDILQVVRYCTD-LIEEKDLEKLDLVIKYMKRLMQQSVESVW--NM 73 (97)
T ss_dssp CCCBTTBCSHHHHHHHHHHHHHHCS-----SCCHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHCSCHHH--HH
T ss_pred CCcccCCcCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHH-HhhccCHHHHHHHHHHHHHHHhcccccHH--HH
Confidence 5889999999999999999998643 355443 34555532 23444420 1111111111110 144444 45
Q ss_pred hhHHHHHHHHHHhhccCcC
Q 017952 342 HRRRLHQRIQRLELEGNDS 360 (363)
Q Consensus 342 hr~rlRqRiq~i~~~~~~~ 360 (363)
--+++...||....+.-++
T Consensus 74 A~~~I~~~VQ~~v~~~yG~ 92 (97)
T 4fjo_A 74 AFDFILDNVQVVLQQTYGS 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 5567777888877665544
No 3
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=37.25 E-value=8.4 Score=29.69 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=21.7
Q ss_pred EeehhhhhhHhhhhcceeeeeeecccCCCCCCCHHHHHhcc
Q 017952 94 LSYGIGIYGAMALAGRFICSITGVDSMGGFHPSLDAIVEGL 134 (363)
Q Consensus 94 lsygigiYg~mA~aG~fIC~~tGiD~~GGF~~Sldai~~Gl 134 (363)
+||+||+--|--+... |++ ++.+|++++|+
T Consensus 32 ~SYaIG~~mG~~L~~~------g~~-----~lD~dav~~Gl 61 (88)
T 3b09_A 32 ASYGVGRQMGEQLAAN------SFE-----GIDIPAVQAGL 61 (88)
T ss_dssp HHHHHHHHHHHHHHHS------CCT-----TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC------Ccc-----ccCHHHHHHHH
Confidence 8999998766665443 222 37999999996
No 4
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=37.10 E-value=9.3 Score=30.70 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHhcceeeeecCCCCCceEEeecccCccchHHHHHHHHHHHHHHhhhHhhhH
Q 017952 234 PFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSP 297 (363)
Q Consensus 234 PFAq~fAavltaaLTGSlYyva~spkDPtYvvaPv~~sr~~r~dlkklf~aWyErRqmkKIYSP 297 (363)
+|.++|+.+|..++.-. |- .. || ..++.+.+++..|.|| +||++
T Consensus 78 ~f~~~F~~~L~~~~~~~-~~-~~---~~-----------~~~~kv~rvl~iWeer----~vf~~ 121 (142)
T 2km4_A 78 QFQDSFGKVAAEVLGRI-NQ-EF---PR-----------DLKKKLSRVVNILKER----NIFSK 121 (142)
T ss_dssp HHHHHHHHTHHHHHHHH-HH-HS---CH-----------HHHHHHHHHHHHHHHH----TCSCH
T ss_pred HHHHHHHHHHHHHHHHH-HH-cC---CH-----------HHHHHHHHHHHHhhcc----CCcCH
Confidence 57888888888777543 21 11 22 2478899999999998 46654
No 5
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=32.65 E-value=5.6 Score=32.67 Aligned_cols=42 Identities=29% Similarity=0.498 Sum_probs=20.8
Q ss_pred hcceeeeecCCCCCceEEeecccCccchHHHHHHHHHHHHHHhh
Q 017952 248 TGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQM 291 (363)
Q Consensus 248 TGSlYyva~spkDPtYvvaPv~~sr~~r~dlkklf~aWyErRqm 291 (363)
|--||+...|-+||-|+|.==++. .-+.++.+|..|.+-++.
T Consensus 15 ~~~~~~~~ms~~DPF~~Vk~EVq~--sl~~l~~l~~~w~~l~~~ 56 (130)
T 4dnd_A 15 TENLYFQSMSLEDPFFVVRGEVQK--AVNTARGLYQRWCELLQE 56 (130)
T ss_dssp ------------CCHHHHHHHHHH--HHHHHHHHHHHHHHC---
T ss_pred ccceeeecCCCCCCcHHHHHHHHH--HHHHHHHHHHHHHHhhcc
Confidence 456899999999999998754443 367788999999865544
No 6
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens}
Probab=29.75 E-value=34 Score=28.41 Aligned_cols=34 Identities=35% Similarity=0.581 Sum_probs=26.2
Q ss_pred ccceEEEeehhhhhhHhhhhcceeeeeeecccC-CCCCCCHHHHHh
Q 017952 88 IGAIVRLSYGIGIYGAMALAGRFICSITGVDSM-GGFHPSLDAIVE 132 (363)
Q Consensus 88 igavvrlsygigiYg~mA~aG~fIC~~tGiD~~-GGF~~Sldai~~ 132 (363)
-|.-++|+|. ||-| -++.||.. +||++|++|.-+
T Consensus 60 CGtC~~lty~----------g~si-~vlaID~a~~Gfnis~~A~n~ 94 (120)
T 3m3g_A 60 CGTCWKLQYS----------GHTI-YVLAVDHAASGFNIALDAMNA 94 (120)
T ss_dssp TTCEEEEEET----------TEEE-EEEEEEECSSSEEECHHHHHH
T ss_pred CCceEEEEEC----------CeEE-EEEEEecCCCceeecHHHHHH
Confidence 4677899996 4654 58899955 589999999743
No 7
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani}
Probab=28.29 E-value=35 Score=28.87 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=28.1
Q ss_pred hccceEEEeehhhhhhHhhhhcceeeeeeecccCC-CCCCCHHHHH
Q 017952 87 KIGAIVRLSYGIGIYGAMALAGRFICSITGVDSMG-GFHPSLDAIV 131 (363)
Q Consensus 87 kigavvrlsygigiYg~mA~aG~fIC~~tGiD~~G-GF~~Sldai~ 131 (363)
.-|.-++|+|- .||-| -++.||..+ ||+++++|.-
T Consensus 65 ~CGtC~~lty~---------ng~sI-~vlaID~A~~gFnIs~~Amn 100 (129)
T 2kqa_A 65 SCGTCWKVTIP---------NGNSI-FIRGVDSGRGGFNVNPTAFT 100 (129)
T ss_dssp TCSCEEEEEET---------TTEEE-EEEEEEECSSSEEECHHHHH
T ss_pred CCCceEEEEEc---------CCCEE-EEEEEccCCCceeehHHHHH
Confidence 45677889995 27777 689999988 9999999863
No 8
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=27.73 E-value=57 Score=25.11 Aligned_cols=41 Identities=32% Similarity=0.643 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHhcceeeeecCCCCCceEEeecccCccchHHHHHHHHHHHHHHhhhHhhhH
Q 017952 234 PFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSP 297 (363)
Q Consensus 234 PFAq~fAavltaaLTGSlYyva~spkDPtYvvaPv~~sr~~r~dlkklf~aWyErRqmkKIYSP 297 (363)
.|.+.|..++..++.-. .|| ..++.+.|++..|.|| +||+|
T Consensus 78 ~f~~~f~~~l~~~~~~~--------~~~-----------~~~~kl~~ll~iW~~r----~vf~~ 118 (132)
T 4flb_A 78 IFRESFADVLPEAAALV--------KDP-----------SVSKSVERIFKIWEDR----NVYPE 118 (132)
T ss_dssp HHHHHHHTTHHHHHHTT--------CST-----------TTHHHHHHHHHHHHHH----TSSCH
T ss_pred HHHHHHHHHHHHHHHHh--------CCH-----------HHHHHHHHHHHHhccC----CCcCH
Confidence 36666766666665321 122 3578899999999986 46765
No 9
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=27.26 E-value=38 Score=27.80 Aligned_cols=88 Identities=16% Similarity=0.219 Sum_probs=50.1
Q ss_pred eecccCccchHHHHHHHHHHHHHHhhhHhhhHHHHH--HHHHHhcceeeeeCcch-hhHHHhhhhhhh-hhccccchhch
Q 017952 266 APVLRSRSGREDLKKLFAAWYERRQMKKIYSPLLEG--LLALYLGFEWIQTNNIL-APIITHGIYSAV-ILGHGLWKIHD 341 (363)
Q Consensus 266 aPv~~sr~~r~dlkklf~aWyErRqmkKIYSPLlEg--lLalYLGfEWiqT~NIL-APiiTHgiYS~V-vlghGLwkihd 341 (363)
.|-+.+.+...|+|.++++|++... .|--+- +|+-||.= -++..|+= +..+-.-+|-.| =.|+.-| |.
T Consensus 29 ~P~f~g~t~l~evK~lL~~Wv~s~~-----~P~~~DV~~l~~yL~~-lVeek~Lek~~~vlk~l~rlv~~~~~~~W--~~ 100 (124)
T 3vu7_H 29 APNLAGAVEFNDVKTLLREWITTIS-----DPMEEDILQVVKYCTD-LIEEKDLEKLDLVIKYMKRLMQQSVESVW--NM 100 (124)
T ss_dssp -CCCSSSCSHHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHSCSTTHH--HH
T ss_pred CCccCCCcCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHH-HhhcccHHHHHHHHHHHHHHHhcccccHH--HH
Confidence 4668999999999999999998653 365443 34445432 23344420 011111111111 0255555 45
Q ss_pred hhHHHHHHHHHHhhccCcCC
Q 017952 342 HRRRLHQRIQRLELEGNDSD 361 (363)
Q Consensus 342 hr~rlRqRiq~i~~~~~~~~ 361 (363)
--+++...||....+.-+++
T Consensus 101 Ay~~I~~~VQ~~m~~~yG~~ 120 (124)
T 3vu7_H 101 AFDFILDNVQVVLQQTYGST 120 (124)
T ss_dssp HHHHHHHHHHHHHHHHTSCB
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 56778888888887766554
No 10
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=25.51 E-value=61 Score=26.47 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=31.3
Q ss_pred ccchHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHh
Q 017952 272 RSGREDLKKLFAAWYERRQMKKIYSPLLEGLLALYL 307 (363)
Q Consensus 272 r~~r~dlkklf~aWyErRqmkKIYSPLlEglLalYL 307 (363)
|..++...+++.+||++.-.+--|.-|+++|-..-|
T Consensus 46 ~d~~Eq~~qlLr~W~~~~G~~aa~~~Li~aLr~~~l 81 (115)
T 3ezq_A 46 QDTAEQKVQLLRNWHQLHGKKEAYDTLIKDLKKANL 81 (115)
T ss_dssp SCHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhCcccHHHHHHHHHHHccc
Confidence 556788899999999999999999999999987654
No 11
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=22.65 E-value=51 Score=25.40 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=30.5
Q ss_pred CccchHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHh
Q 017952 271 SRSGREDLKKLFAAWYERRQMKKIYSPLLEGLLALYL 307 (363)
Q Consensus 271 sr~~r~dlkklf~aWyErRqmkKIYSPLlEglLalYL 307 (363)
.|..+|...+++.+||++--.+--|.=|+++|-..-|
T Consensus 37 ~~d~~Eq~~qmL~~W~~~~g~~a~~~~Li~~Lr~~~l 73 (86)
T 3oq9_A 37 IQDTAEQKVQLLLCWYQSHGKSDAYQDLIKGLKKAEC 73 (86)
T ss_dssp TTCCTTHHHHHHHHHHHHSCSSSHHHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHHHhCcchHHHHHHHHHHHccc
Confidence 3556788999999999998888899999999876543
No 12
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa}
Probab=20.70 E-value=61 Score=27.66 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=26.8
Q ss_pred ccceEEEeehhhhhhHhhhhcceeeeeeecccCC-C--CCCCHHHHHh
Q 017952 88 IGAIVRLSYGIGIYGAMALAGRFICSITGVDSMG-G--FHPSLDAIVE 132 (363)
Q Consensus 88 igavvrlsygigiYg~mA~aG~fIC~~tGiD~~G-G--F~~Sldai~~ 132 (363)
-|.-++|+|. ||-| -++.||..+ | |++|.||.-+
T Consensus 60 CGtCwkLtY~----------G~sI-~vlaID~a~~g~~FnIs~~Amn~ 96 (136)
T 3sum_A 60 CGSCWKLRYK----------GNHA-FVTVVDRVEEANLFVGGTDLVKN 96 (136)
T ss_dssp TTCEEEEEET----------TEEE-EEEEEECCCSTTEEEECHHHHHH
T ss_pred CCceEEEEEC----------CeEE-EEEEEecCCCcceEeehHHHHHH
Confidence 4778999997 5654 588999665 6 9999999754
Done!