Query 017952
Match_columns 363
No_of_seqs 16 out of 18
Neff 1.7
Searched_HMMs 13730
Date Mon Mar 25 07:33:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017952.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017952hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jhfa1 a.4.5.2 (A:2-72) LexA 32.0 14 0.00099 25.3 2.6 47 122-168 22-71 (71)
2 d1h3na1 a.27.1.1 (A:687-814) L 30.0 14 0.00099 26.0 2.4 18 316-335 91-111 (128)
3 d2msta_ d.58.7.1 (A:) Neural R 28.9 12 0.0009 23.8 1.8 19 163-181 9-27 (75)
4 d2gexa1 d.17.4.9 (A:2-139) Nog 26.4 9.8 0.00072 26.5 1.0 25 273-297 4-30 (138)
5 d1agga_ g.3.6.2 (A:) omega-Aga 26.2 3.5 0.00025 28.4 -1.5 24 110-137 25-48 (48)
6 d1fd9a_ d.26.1.1 (A:) Macropha 25.7 7.7 0.00056 30.6 0.3 29 93-133 5-33 (204)
7 d1ucva_ a.60.1.2 (A:) Ephrin t 25.2 20 0.0015 24.5 2.5 20 341-360 54-73 (81)
8 d5ruba1 c.1.14.1 (A:138-457) R 25.0 75 0.0055 27.0 6.7 118 175-317 32-188 (320)
9 d2pfxa1 a.152.1.3 (A:1-190) Un 24.5 78 0.0057 23.8 6.1 89 256-348 2-98 (190)
10 d1wg5a_ d.58.7.1 (A:) Heteroge 24.1 15 0.0011 25.3 1.7 17 163-179 25-41 (104)
11 d1bwva1 c.1.14.1 (A:150-478) R 23.3 35 0.0025 29.4 4.2 102 210-317 45-181 (328)
12 d1wela1 d.58.7.1 (A:412-523) R 21.3 17 0.0012 25.5 1.5 17 164-180 29-45 (112)
13 d1z05a2 c.55.1.10 (A:209-405) 21.3 60 0.0044 23.7 4.7 66 276-353 86-153 (197)
14 d1x4ea1 d.58.7.1 (A:8-79) RNA- 21.1 15 0.0011 23.5 1.0 17 163-179 8-24 (72)
No 1
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=32.05 E-value=14 Score=25.27 Aligned_cols=47 Identities=28% Similarity=0.491 Sum_probs=32.7
Q ss_pred CCCCCHHHHHhccCCChhh-HHHHHhhccc-chhccCc-ccccccccchH
Q 017952 122 GFHPSLDAIVEGLGYAAPP-IMALLFILDD-EVVKLSP-HARAIRDVEDE 168 (363)
Q Consensus 122 GF~~Sldai~~GlGYA~pP-imaLLFIldD-eVVk~sp-~ARAIRDVEDe 168 (363)
|+-||...|.+++|+.+|- +-..|=-|.+ -.++-.| .+|+|+=++||
T Consensus 22 G~~Ps~rei~~~~g~~S~stv~~~l~~Le~kG~I~r~~~~~R~i~i~~~~ 71 (71)
T d1jhfa1 22 GMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIRLLQEE 71 (71)
T ss_dssp SSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECSSSSSCEEECCCC
T ss_pred CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHCcCeecCCCCCceeEecCCC
Confidence 8899999999999998775 4444433333 2333334 58999888775
No 2
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}
Probab=29.99 E-value=14 Score=26.05 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=11.8
Q ss_pred cchhhHHHhh---hhhhhhhccc
Q 017952 316 NILAPIITHG---IYSAVILGHG 335 (363)
Q Consensus 316 NILAPiiTHg---iYS~VvlghG 335 (363)
.+|+|++||. +|+. ||++
T Consensus 91 ~ll~P~~P~itEeiw~~--l~~~ 111 (128)
T d1h3na1 91 QMLFPFAPHLAEELWHW--FWPD 111 (128)
T ss_dssp HHHTTTSHHHHHHHHTT--TCSS
T ss_pred HHHHHHHHHHHHHHHHH--hCCC
Confidence 5688888885 5654 3554
No 3
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.93 E-value=12 Score=23.81 Aligned_cols=19 Identities=11% Similarity=0.281 Sum_probs=15.5
Q ss_pred cccchHHHHHHhhcCCchh
Q 017952 163 RDVEDEELRSFFYGMSPWQ 181 (363)
Q Consensus 163 RDVEDeEL~~fF~GMspwQ 181 (363)
.|+.+|||++||...++-+
T Consensus 9 ~~~te~~l~~~F~~~G~i~ 27 (75)
T d2msta_ 9 VNTTVEDVKHYFEQFGKVD 27 (75)
T ss_dssp SSCCHHHHHHHHHTTSCCS
T ss_pred CCCCHHHHHHHHHHhCCcc
Confidence 3789999999999876543
No 4
>d2gexa1 d.17.4.9 (A:2-139) Nogalamycin biosynthesis protein SnoL {Streptomyces nogalater [TaxId: 38314]}
Probab=26.43 E-value=9.8 Score=26.50 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=19.4
Q ss_pred cchHHHHHHHHHHHHH--HhhhHhhhH
Q 017952 273 SGREDLKKLFAAWYER--RQMKKIYSP 297 (363)
Q Consensus 273 ~~r~dlkklf~aWyEr--RqmkKIYSP 297 (363)
+++|-++|+++||.++ -.|+++|+|
T Consensus 4 an~e~~~~~~~a~~~~D~~~~~~~~a~ 30 (138)
T d2gexa1 4 ANKERCLEMVAAWNRWDVSGVVAHWAP 30 (138)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHhCc
Confidence 4678899999999775 356777776
No 5
>d1agga_ g.3.6.2 (A:) omega-Agatoxin IV, IVa, IVb {Funnel web spider (Agelenopsis aperta) [TaxId: 6908]}
Probab=26.20 E-value=3.5 Score=28.44 Aligned_cols=24 Identities=33% Similarity=0.611 Sum_probs=18.7
Q ss_pred eeeeeeecccCCCCCCCHHHHHhccCCC
Q 017952 110 FICSITGVDSMGGFHPSLDAIVEGLGYA 137 (363)
Q Consensus 110 fIC~~tGiD~~GGF~~Sldai~~GlGYA 137 (363)
-||||.|-.| +-.|.-|.||||+|
T Consensus 25 c~cs~~gtnc----ec~prlimegl~~a 48 (48)
T d1agga_ 25 CRCSMIGTNC----ECTPRLIMEGLSFA 48 (48)
T ss_dssp EEECSSSSSE----EECSCCTTTTCSCC
T ss_pred cEEEEecCCc----ccchhhhhhccccC
Confidence 5899998876 45666789999986
No 6
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}
Probab=25.73 E-value=7.7 Score=30.57 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=23.6
Q ss_pred EEeehhhhhhHhhhhcceeeeeeecccCCCCCCCHHHHHhc
Q 017952 93 RLSYGIGIYGAMALAGRFICSITGVDSMGGFHPSLDAIVEG 133 (363)
Q Consensus 93 rlsygigiYg~mA~aG~fIC~~tGiD~~GGF~~Sldai~~G 133 (363)
++||+||.--|.-+..+ |+++.++++++|
T Consensus 5 k~SYaiG~~iG~~l~~~------------~~eld~e~~~~G 33 (204)
T d1fd9a_ 5 KLSYSIGADLGKNFKNQ------------GIDVNPEAMAKG 33 (204)
T ss_dssp HHHHHHHHHHHHHHHHH------------TCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc------------cCccCHHHHHHH
Confidence 37999998877777653 678999999998
No 7
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.20 E-value=20 Score=24.48 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHhhccCcC
Q 017952 341 DHRRRLHQRIQRLELEGNDS 360 (363)
Q Consensus 341 dhr~rlRqRiq~i~~~~~~~ 360 (363)
-||+|+...|++|+.+..+.
T Consensus 54 ghr~kIl~~i~~Lk~~~~~~ 73 (81)
T d1ucva_ 54 GHQKKILGSIQTMRAQLTST 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 59999999999998875544
No 8
>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}
Probab=25.04 E-value=75 Score=26.99 Aligned_cols=118 Identities=23% Similarity=0.367 Sum_probs=79.3
Q ss_pred hcCCchhhhHHhhhccchhHHHHHHHHhhhhHHHHhhCCCcccccccchhhcccCCCcchHHHHHHHHHHHHH-----hc
Q 017952 175 YGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGVLPPFVPFAQAFAAVITAAL-----TG 249 (363)
Q Consensus 175 ~GMspwQFiliVaAssvgEElFyR~AvQGaladiflrgt~l~~d~~GmasLtgv~PpFvPFAq~fAavltaaL-----TG 249 (363)
.|+||-|+ -|++|..+. | | ++++|--++++ |||.||.+=+.++.-++= ||
T Consensus 32 ~GLsp~~~----------a~~~~e~~~-G--------G-D~IKDDE~lad-----~~~~p~~eRv~~~~~av~~a~~eTG 86 (320)
T d5ruba1 32 LGLRPKPF----------AEACHAFWL-G--------G-DFIKNDEPQGN-----QPFAPLRDTIALVADAMRRAQDETG 86 (320)
T ss_dssp SCCCHHHH----------HHHHHHHTT-T--------C-SEEECCTTCSC-----BTTBCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHH----------HHHHHHHHh-c--------C-ccccCCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 36676665 356665442 3 5 67777777765 799999998887776654 67
Q ss_pred c--eeeeecCCCCCc--------------------eEEeec-ccCccchHHHHHHHH-----------HHHHHHhhhHhh
Q 017952 250 S--LYYVATSPKDPT--------------------YVVAPV-LRSRSGREDLKKLFA-----------AWYERRQMKKIY 295 (363)
Q Consensus 250 S--lYyva~spkDPt--------------------YvvaPv-~~sr~~r~dlkklf~-----------aWyErRqmkKIY 295 (363)
- ||++..+-.||. .++.++ .-+-+..+++++.+. .++-+|+-.-.+
T Consensus 87 ~~~lYa~NiT~~~~~em~~ra~~~~e~gg~~~~~~~lmi~~~~~G~~~~~~lr~~~~~~~ih~H~a~~g~~~~~~~~~g~ 166 (320)
T d5ruba1 87 EAKLFSANITADDPFEIIARGEYVLETFGENASHVALLVDGYVAGAAAITTARRRFPDNFLHYHRAGHGAVTSPQSKRGY 166 (320)
T ss_dssp SCCEEEEECCCSSHHHHHHHHHHHHHHHGGGGGGEEEEEETTTSCHHHHHHHHHHCTTSCEEEECTTTHHHHSTTCCSEE
T ss_pred CcceeeecccCCCHHHHHHHHHHHHHhcCccccceeEeecccccHHHHHHHHHHhccccccccccccccccccCCcCCcc
Confidence 5 999997644552 333333 346667777877542 245566666666
Q ss_pred hHHHHHHHHHHhcceeeeeCcc
Q 017952 296 SPLLEGLLALYLGFEWIQTNNI 317 (363)
Q Consensus 296 SPLlEglLalYLGfEWiqT~NI 317 (363)
|.++=+-|.-..|-.-|+++|.
T Consensus 167 s~~vl~KL~RLaGaD~ih~~~~ 188 (320)
T d5ruba1 167 TAFVHCKMARLQGASGIHTGTM 188 (320)
T ss_dssp CHHHHHHHHHHHTCSEEECCC-
T ss_pred cHHHHHHHHHHhCcCeeeecCc
Confidence 6666677888889999998876
No 9
>d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465 {Silicibacter sp. tm1040 [TaxId: 292414]}
Probab=24.47 E-value=78 Score=23.84 Aligned_cols=89 Identities=21% Similarity=0.267 Sum_probs=56.2
Q ss_pred cCCCCCceEEeecccCccchHHHHHHHHHHHHHH----hhhHhhh---HHHHHHHHHHhcceeeeeCcchhhHHHhhhhh
Q 017952 256 TSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERR----QMKKIYS---PLLEGLLALYLGFEWIQTNNILAPIITHGIYS 328 (363)
Q Consensus 256 ~spkDPtYvvaPv~~sr~~r~dlkklf~aWyErR----qmkKIYS---PLlEglLalYLGfEWiqT~NILAPiiTHgiYS 328 (363)
+.|+-||.+=.|-.. .--+++|++|+..-++. .+-|.++ .++++.+++|-.+-+ .+..|.|-.-..|.-
T Consensus 2 ~~~~~pt~~~lp~~d--~~p~~~~~~~~~~~~~~G~vpN~~~~la~~P~~l~a~~~~~~~~~~--~~~~L~~~~rEli~l 77 (190)
T d2pfxa1 2 TKPKEPTALDLPMAD--PLPDETQKYFEICQEKLGMVPNVLKAYAFNVEKLNAFTAMYNDLML--GESQLSKLEREMIAV 77 (190)
T ss_dssp SCCCSSCSSCCCCCS--SCCHHHHHHHHHHHHHHSSCCHHHHHHTTSHHHHHHHHHHHHHHHH--SSCSSCHHHHHHHHH
T ss_pred CCCCCCcCCCCCCCC--CCCHHHHHHHHHHHHHhCCCcHHHHHHHcCHHHHHHHHHHHHHHHh--ccccccHHHHHHHHH
Confidence 689999997656443 34589999998887666 3555554 456777776655422 344578877777777
Q ss_pred hhhhccccch-hchhhHHHHH
Q 017952 329 AVILGHGLWK-IHDHRRRLHQ 348 (363)
Q Consensus 329 ~VvlghGLwk-ihdhr~rlRq 348 (363)
.|=--||-.- ...|...+++
T Consensus 78 ~vS~~n~C~YC~~~H~~~~~~ 98 (190)
T d2pfxa1 78 VVSSINKCFYCLVAHGAAVRQ 98 (190)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHH
Confidence 6665555422 2334444443
No 10
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.11 E-value=15 Score=25.30 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.6
Q ss_pred cccchHHHHHHhhcCCc
Q 017952 163 RDVEDEELRSFFYGMSP 179 (363)
Q Consensus 163 RDVEDeEL~~fF~GMsp 179 (363)
.|+.+|||++||.+..+
T Consensus 25 ~~~te~dI~~~F~~~g~ 41 (104)
T d1wg5a_ 25 FGCSKEEIVQFFSGLEI 41 (104)
T ss_dssp TTCCHHHHHHHTTTCCE
T ss_pred CCCCHHHHHHHHHhcCC
Confidence 37899999999988775
No 11
>d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=23.27 E-value=35 Score=29.41 Aligned_cols=102 Identities=17% Similarity=0.261 Sum_probs=67.5
Q ss_pred hhCCCcccccccchhhcccCCCcchHHHHHHHHHHHH-----Hhc--ceeeeecCCCCC---------------ceEEee
Q 017952 210 LRGTDFLTDAQGMASLTGVLPPFVPFAQAFAAVITAA-----LTG--SLYYVATSPKDP---------------TYVVAP 267 (363)
Q Consensus 210 lrgt~l~~d~~GmasLtgv~PpFvPFAq~fAavltaa-----LTG--SlYyva~spkDP---------------tYvvaP 267 (363)
+-|-++++|--++++ |||.||.+-+.++.-++ =|| .+||+..+-.++ ..++.+
T Consensus 45 ~GGvD~IKDDE~l~~-----q~~~p~~eRv~~~~~av~~a~~eTG~~~~ya~NiT~~~~~~m~~ra~~~~~~g~~~lm~~ 119 (328)
T d1bwva1 45 KGGLDFVKDDENINS-----QPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATMEEMYARANFAKELGSVIIMID 119 (328)
T ss_dssp HHTCSEEECCTTCSS-----BTTBCHHHHHHHHHHHHHHHHHHHTSCCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred hcCCCeeeCCccccC-----CCccchHHHHHHHHHHHHHHHHHhCCeeEEEEeccCCCHHHHHHHHHHHHhcCCeEEEEc
Confidence 456699999998876 79999999998887766 688 799998864443 456666
Q ss_pred cccCccchHHHHHHHH-------------HHHHHHhhhHhhhHHHHHHHHHHhcceeeeeCcc
Q 017952 268 VLRSRSGREDLKKLFA-------------AWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNI 317 (363)
Q Consensus 268 v~~sr~~r~dlkklf~-------------aWyErRqmkKIYSPLlEglLalYLGfEWiqT~NI 317 (363)
+.-+-.+.+.|.++-+ ..+-| +-.--+|..+=+-|.-..|..-++++|.
T Consensus 120 ~~~G~~~l~~la~~~~~~~l~iH~H~Ag~g~~t~-~~~~Gis~~vl~KL~RLaGaD~ih~~t~ 181 (328)
T d1bwva1 120 LVIGYTAIQTMAKWARDNDMILHLHRAGNSTYSR-QKNHGMNFRVICKWMRMAGVDHIHAGTV 181 (328)
T ss_dssp GGGCHHHHHHHHHHHHHTTCEEEEECTTTHHHHS-CTTSEECHHHHHHHHHHHTCSEEECCCS
T ss_pred cccchHHHHHHHHHhhhcCeeecccccccccccC-CCCCCcCHHHHHHHHHHcCCCccccCcc
Confidence 5556677777766421 12222 1122334333334446688888888875
No 12
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.34 E-value=17 Score=25.54 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=14.3
Q ss_pred ccchHHHHHHhhcCCch
Q 017952 164 DVEDEELRSFFYGMSPW 180 (363)
Q Consensus 164 DVEDeEL~~fF~GMspw 180 (363)
++.++||++||.+.++-
T Consensus 29 ~~t~~di~~~F~~~g~~ 45 (112)
T d1wela1 29 EAENKHVIDFFKKLDIV 45 (112)
T ss_dssp TCCHHHHHHHSCSSCBC
T ss_pred cCcHHHHhhHHhhcccc
Confidence 78999999999887643
No 13
>d1z05a2 c.55.1.10 (A:209-405) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}
Probab=21.26 E-value=60 Score=23.69 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHH-hhhHhhhHHHHHHHHHHhcceeeeeCcchhhHHHhhhhhhhhhccccchhch-hhHHHHHHHHHH
Q 017952 276 EDLKKLFAAWYERR-QMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKIHD-HRRRLHQRIQRL 353 (363)
Q Consensus 276 ~dlkklf~aWyErR-qmkKIYSPLlEglLalYLGfEWiqT~NILAPiiTHgiYS~VvlghGLwkihd-hr~rlRqRiq~i 353 (363)
.+.+++|++|.+.- ..++++.-. +-|||.--...-|+|.| ..||+|-|+.+..+ -..++|+++++.
T Consensus 86 ~~~~~l~~~a~~gd~~a~~~~~~~-----~~~la~~i~nl~~~ldP-------~~IviGG~~~~~~~~~~~~i~~~~~~~ 153 (197)
T d1z05a2 86 ISIEDICAAAADGDPLAVDVIQQL-----GRYLGAAIAIVINLFNP-------EKILIGGVINQAKSILYPSIEQCIREQ 153 (197)
T ss_dssp CCHHHHHHHHHTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHCC-------SEEEEESGGGGGHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCHHHHHHHHHH-----HHHHHHHHHhHHHhcCC-------CEEEEecchHHhhHHHHHHHHHHHHHh
Confidence 35778888887642 122232221 12222111112234444 47899999887654 366777777653
No 14
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.05 E-value=15 Score=23.47 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=14.6
Q ss_pred cccchHHHHHHhhcCCc
Q 017952 163 RDVEDEELRSFFYGMSP 179 (363)
Q Consensus 163 RDVEDeEL~~fF~GMsp 179 (363)
.|+.+|||+++|...++
T Consensus 8 ~~~te~~l~~~F~~~G~ 24 (72)
T d1x4ea1 8 PGTTDQDLVKLCQPYGK 24 (72)
T ss_dssp TTCCHHHHHTTSTTTSC
T ss_pred CcCCHHHHHHHHhhhcc
Confidence 47899999999987775
Done!