Query 017953
Match_columns 363
No_of_seqs 125 out of 715
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 04:52:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02405 hexokinase 100.0 6E-114 1E-118 875.6 36.1 362 1-362 136-497 (497)
2 PLN02914 hexokinase 100.0 1E-111 3E-116 856.0 35.5 355 1-357 136-490 (490)
3 PLN02362 hexokinase 100.0 1E-110 2E-115 853.7 35.3 358 1-359 136-503 (509)
4 PLN02596 hexokinase-like 100.0 2E-110 4E-115 847.9 35.2 351 1-357 137-487 (490)
5 PTZ00107 hexokinase; Provision 100.0 4E-103 9E-108 792.9 33.7 331 4-358 125-464 (464)
6 KOG1369 Hexokinase [Carbohydra 100.0 7E-103 2E-107 781.9 29.4 345 1-360 126-473 (474)
7 COG5026 Hexokinase [Carbohydra 100.0 1.5E-88 3.3E-93 662.9 28.7 344 4-359 118-464 (466)
8 PF03727 Hexokinase_2: Hexokin 100.0 1.2E-73 2.6E-78 537.5 20.4 241 109-356 1-243 (243)
9 PF00349 Hexokinase_1: Hexokin 100.0 6.1E-35 1.3E-39 268.1 9.6 104 1-107 102-206 (206)
10 TIGR00744 ROK_glcA_fam ROK fam 98.4 9.1E-05 2E-09 71.9 22.9 267 4-351 32-308 (318)
11 PRK09698 D-allose kinase; Prov 98.2 0.00035 7.5E-09 67.5 20.9 246 7-351 42-294 (302)
12 PRK13310 N-acetyl-D-glucosamin 98.0 0.0017 3.7E-08 62.7 22.6 258 4-351 35-300 (303)
13 KOG1794 N-Acetylglucosamine ki 98.0 0.0013 2.9E-08 63.1 19.4 271 11-354 44-317 (336)
14 PRK05082 N-acetylmannosamine k 97.8 0.0042 9.1E-08 59.6 21.1 244 4-351 37-286 (291)
15 PRK09557 fructokinase; Reviewe 97.8 0.016 3.4E-07 56.0 24.1 251 4-351 35-299 (301)
16 PF01869 BcrAD_BadFG: BadF/Bad 97.1 0.0023 4.9E-08 60.9 8.9 79 262-351 193-271 (271)
17 COG1940 NagC Transcriptional r 96.7 0.2 4.2E-06 48.6 19.0 256 6-353 44-307 (314)
18 PRK12408 glucokinase; Provisio 96.4 0.45 9.7E-06 47.0 19.5 256 9-351 56-331 (336)
19 PRK14101 bifunctional glucokin 95.8 0.51 1.1E-05 50.7 17.9 254 9-351 52-328 (638)
20 PRK00292 glk glucokinase; Prov 95.7 0.98 2.1E-05 43.9 18.0 203 86-351 91-313 (316)
21 PRK13311 N-acetyl-D-glucosamin 93.9 0.64 1.4E-05 43.9 10.9 102 5-127 36-141 (256)
22 PTZ00288 glucokinase 1; Provis 93.2 11 0.00024 38.4 21.4 271 4-358 66-395 (405)
23 TIGR00749 glk glucokinase, pro 92.6 7.7 0.00017 37.7 16.5 258 8-348 32-316 (316)
24 PF00480 ROK: ROK family; Int 91.0 2 4.4E-05 37.6 9.6 100 4-127 31-136 (179)
25 PF02782 FGGY_C: FGGY family o 90.4 2.6 5.5E-05 37.6 9.8 47 300-355 152-198 (198)
26 PF02685 Glucokinase: Glucokin 80.5 46 0.001 32.7 13.6 150 10-195 36-202 (316)
27 PRK00976 hypothetical protein; 77.1 25 0.00055 34.8 10.5 72 263-352 239-310 (326)
28 COG1069 AraB Ribulose kinase [ 68.6 1.6E+02 0.0036 31.1 17.1 66 276-355 415-480 (544)
29 COG2971 Predicted N-acetylgluc 68.1 1.3E+02 0.0027 29.6 19.0 186 82-351 91-289 (301)
30 KOG2517 Ribulose kinase and re 63.1 25 0.00053 37.0 7.3 83 252-357 383-465 (516)
31 PRK04123 ribulokinase; Provisi 61.4 38 0.00083 35.5 8.6 48 300-355 441-488 (548)
32 TIGR01314 gntK_FGGY gluconate 58.5 56 0.0012 33.9 9.2 46 301-355 405-450 (505)
33 PRK10939 autoinducer-2 (AI-2) 55.7 69 0.0015 33.4 9.4 46 301-355 413-458 (520)
34 TIGR01234 L-ribulokinase L-rib 54.9 71 0.0015 33.5 9.3 49 300-356 438-486 (536)
35 TIGR01312 XylB D-xylulose kina 54.5 78 0.0017 32.3 9.4 48 300-356 393-440 (481)
36 PRK13317 pantothenate kinase; 53.1 1E+02 0.0022 29.7 9.4 51 259-323 198-248 (277)
37 PRK00047 glpK glycerol kinase; 49.0 91 0.002 32.3 8.9 46 301-355 407-452 (498)
38 TIGR02628 fuculo_kin_coli L-fu 48.7 99 0.0021 31.7 9.1 46 301-355 397-442 (465)
39 PRK00753 psbL photosystem II r 48.3 23 0.0005 23.7 2.8 29 171-199 4-32 (39)
40 PTZ00294 glycerol kinase-like 48.1 1E+02 0.0022 32.0 9.2 46 301-355 410-455 (504)
41 PF02419 PsbL: PsbL protein; 47.7 19 0.00042 23.9 2.3 29 171-199 2-30 (37)
42 PRK15027 xylulokinase; Provisi 46.8 1.2E+02 0.0025 31.4 9.3 47 300-355 389-436 (484)
43 TIGR01311 glycerol_kin glycero 44.8 1.2E+02 0.0026 31.3 9.1 47 300-355 402-448 (493)
44 KOG3127 Deoxycytidylate deamin 44.0 14 0.00031 34.4 1.8 18 97-114 73-90 (230)
45 COG4071 Uncharacterized protei 43.5 23 0.0005 33.0 3.0 52 70-122 143-197 (278)
46 TIGR01315 5C_CHO_kinase FGGY-f 43.1 1.3E+02 0.0028 31.6 9.1 47 300-355 446-492 (541)
47 CHL00038 psbL photosystem II p 41.8 30 0.00065 23.1 2.5 29 171-199 3-31 (38)
48 TIGR03192 benz_CoA_bzdQ benzoy 41.5 86 0.0019 30.7 6.8 112 173-322 148-263 (293)
49 PRK10331 L-fuculokinase; Provi 40.8 1.5E+02 0.0032 30.5 8.9 46 301-355 393-438 (470)
50 PLN02295 glycerol kinase 35.5 1.9E+02 0.004 30.2 8.8 48 300-356 415-462 (512)
51 COG1070 XylB Sugar (pentulose 31.9 6E+02 0.013 26.4 16.4 76 263-355 375-450 (502)
52 PRK03011 butyrate kinase; Prov 29.6 5.2E+02 0.011 25.9 10.4 69 264-347 270-338 (358)
53 PRK10640 rhaB rhamnulokinase; 28.1 3.1E+02 0.0068 28.2 8.9 45 301-355 379-423 (471)
54 TIGR02627 rhamnulo_kin rhamnul 27.9 3E+02 0.0065 28.1 8.7 46 301-356 391-436 (454)
55 COG0497 RecN ATPase involved i 27.7 25 0.00055 37.3 0.7 31 164-197 411-443 (557)
56 PLN02544 phosphoribosylaminoim 25.6 2.3E+02 0.005 28.7 7.0 94 177-277 154-252 (370)
57 TIGR03286 methan_mark_15 putat 25.4 2.4E+02 0.0052 28.9 7.2 112 175-322 265-379 (404)
58 smart00732 YqgFc Likely ribonu 23.5 79 0.0017 24.5 2.8 13 90-102 87-99 (99)
59 TIGR02261 benz_CoA_red_D benzo 22.0 3.3E+02 0.0072 26.1 7.1 112 174-322 121-235 (262)
60 PF00022 Actin: Actin; InterP 22.0 1.1E+02 0.0024 30.2 4.1 51 301-354 314-368 (393)
61 TIGR00555 panK_eukar pantothen 21.5 4.6E+02 0.01 25.4 8.0 26 300-325 233-258 (279)
62 cd01817 RGS12_RBD Ubiquitin do 20.6 1.1E+02 0.0023 23.7 2.8 22 68-89 18-39 (73)
63 PF04459 DUF512: Protein of un 20.1 60 0.0013 29.9 1.6 29 67-95 103-135 (204)
No 1
>PLN02405 hexokinase
Probab=100.00 E-value=5.8e-114 Score=875.59 Aligned_cols=362 Identities=88% Similarity=1.324 Sum_probs=339.6
Q ss_pred CCCChhhhHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecceecccCCceEEEecccceecCCCCCCcHHHHHHHHH
Q 017953 1 MTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAM 80 (363)
Q Consensus 1 ~~g~~~~lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al 80 (363)
|+|++++||||||+||++|+++++.+....+++.+||||||||||+|+++++|+|++|||||++++++|+||+++|++||
T Consensus 136 ~~gt~~~LFdfIA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al 215 (497)
T PLN02405 136 MTGSSDALFDFIAAALAKFVATEGEDFHLPPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAM 215 (497)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcccccccCcccccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHH
Confidence 57999999999999999999998754433345679999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceEEEEEeccHHhhhcccccCCCceEEEEeeccceeeeEcccCCCCcccCCCCCCCceEEEeeccCccCCCCCC
Q 017953 81 ERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPL 160 (363)
Q Consensus 81 ~r~~~~v~v~aivNDTVaTlla~ay~~~~~~iGlIlGTGtNacy~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~l~~ 160 (363)
+|++++|+|+||||||||||++++|.+|+|.||+|+|||||+||+|++++|+|+++..+..++||||||||+|+.+++|+
T Consensus 216 ~r~~l~v~v~AlvNDTVGTL~a~aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~ 295 (497)
T PLN02405 216 ERVGLDMRVSALVNDTIGTLAGGRYYNPDVVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFRSSHLPL 295 (497)
T ss_pred HHcCCCceEEEEEecCHHHHHHhhcCCCCceEEEEEeCCeeeEEEeecccCccccccCCCCCeEEEEeccccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999976555667899999999999888999
Q ss_pred cccchhhhccCCCCCcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCCCCChHHHH
Q 017953 161 TEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVG 240 (363)
Q Consensus 161 T~~D~~~D~~s~~pg~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~ 240 (363)
|+||+++|+.|.|||+|+||||+||||||||+|++|++|++++.||++..|+.|.+||+|+|++||.|+.|++++++.++
T Consensus 296 T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvLl~l~~~~~lF~g~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~~ 375 (497)
T PLN02405 296 TEYDHALDVESLNPGEQIFEKIISGMYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMSAMHHDTSPDLKVVG 375 (497)
T ss_pred chHHHHHhhcCCCCCcchhhHHHhhccHHHHHHHHHHHHHHhccccCCCCcHhhcCCCCcccHHHHHHhcCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHH
Q 017953 241 KKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQS 320 (363)
Q Consensus 241 ~il~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~ 320 (363)
++|++.|+++..+.+|+.++|+||++|++|||||+||+|+||++|+++........++++||||||+|+|||.|++++++
T Consensus 376 ~~l~~~l~~~~~~~~~~~~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGsvye~yp~f~~~~~~ 455 (497)
T PLN02405 376 SKLKDILEIPNTSLKMRKVVVELCNIVATRGARLSAAGIYGILKKLGRDTVKDGEKQKSVIAMDGGLFEHYTEFSKCMES 455 (497)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcceEEEEeCchhhcCcCHHHHHHH
Confidence 99999999987788999999999999999999999999999999998743211112468999999999999999999999
Q ss_pred HHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcchhhhcc
Q 017953 321 TVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQYLEVEE 362 (363)
Q Consensus 321 ~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~~~~~~~~ 362 (363)
++++|++++..++|++++++||||+||||+||+++++.+|||
T Consensus 456 ~l~ell~~~~~~~v~l~~a~DGSGvGAAl~AA~~~~~~~~~~ 497 (497)
T PLN02405 456 TLKELLGEEVSESIEVEHSNDGSGIGAALLAASHSLYLEVEE 497 (497)
T ss_pred HHHHHhCcccCceEEEEEecCchHHHHHHHHHHHhhhhcccC
Confidence 999999887678999999999999999999999999999987
No 2
>PLN02914 hexokinase
Probab=100.00 E-value=1.4e-111 Score=856.02 Aligned_cols=355 Identities=60% Similarity=0.982 Sum_probs=331.4
Q ss_pred CCCChhhhHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecceecccCCceEEEecccceecCCCCCCcHHHHHHHHH
Q 017953 1 MTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAM 80 (363)
Q Consensus 1 ~~g~~~~lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al 80 (363)
|+|++++||||||+||++|+++++.+.++..++.+||||||||||+|+++++|+|++|||||++++++|+||+++|++||
T Consensus 136 ~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~WTKGF~~~gv~G~DVv~lL~~Al 215 (490)
T PLN02914 136 MFGTSEELFDFIASGLANFVAKEGGKFHLPEGRKREIGFTFSFPVKQTSIDSGILMKWTKGFAVSGTAGKDVVACLNEAM 215 (490)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhccccccCCccccccceeeEeeeeecCCCCceEEEEeccccccCCccCchHHHHHHHHH
Confidence 57899999999999999999998754433334679999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceEEEEEeccHHhhhcccccCCCceEEEEeeccceeeeEcccCCCCcccCCCCCCCceEEEeeccCccCCCCCC
Q 017953 81 ERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPL 160 (363)
Q Consensus 81 ~r~~~~v~v~aivNDTVaTlla~ay~~~~~~iGlIlGTGtNacy~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~l~~ 160 (363)
+|++++|+|+||||||||||+|++|.+|+|.||+|+|||||+||+|++++|||+++..+..++|+||||||+|+ +.+|+
T Consensus 216 ~r~~l~v~v~AivNDTVGTL~a~aY~~~~~~iGlIlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~-~~lp~ 294 (490)
T PLN02914 216 ERQGLDMRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDAIPKLQGQKSSSGRTIINTEWGAFS-DGLPL 294 (490)
T ss_pred HHcCCCceEEEEEEcCHHHHHhhhcCCCCceEEEEEECCeeeEEEeecccccccccCCCCCceEEEeccccccC-CCCCC
Confidence 99999999999999999999999999999999999999999999999999999986555567899999999996 57999
Q ss_pred cccchhhhccCCCCCcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCCCCChHHHH
Q 017953 161 TEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVG 240 (363)
Q Consensus 161 T~~D~~~D~~s~~pg~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~ 240 (363)
|+||+++|+.|.|||+|+||||+||||||||+|+||++|++++.||++..|+.|.+||+|+|++||.|++|+++++..++
T Consensus 295 T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvLl~l~~~~~lF~~~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~~ 374 (490)
T PLN02914 295 TEFDREMDAASINPGEQIFEKTISGMYLGEIVRRVLLKMAETSDLFGHFVPEKLSTPFALRTPHLCAMQQDNSDDLQAVG 374 (490)
T ss_pred ChHHHHHhhCCCCCCcchhhhHHhhhhHHHHHHHHHHHHHHhcccccCCCcHhhcCCCccccHHHHHHhcCCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHH
Q 017953 241 KKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQS 320 (363)
Q Consensus 241 ~il~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~ 320 (363)
++|++.+++. ++.+|++++|+||++|.+|||||+||+|+||++|+++........++++||||||+|+|||.|++++++
T Consensus 375 ~~l~~~~~~~-~~~~d~~~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGSv~~~~p~f~~~l~~ 453 (490)
T PLN02914 375 SILYDVLGVE-ASLSARRRVVEVCDTIVKRGGRLAGAGIVGILEKMEEDSKGMIFGKRTVVAMDGGLYEKYPQYRRYMQD 453 (490)
T ss_pred HHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCceEEEEEeCchhhcCccHHHHHHH
Confidence 9999999995 899999999999999999999999999999999998642110122469999999999999999999999
Q ss_pred HHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcch
Q 017953 321 TVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQY 357 (363)
Q Consensus 321 ~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~~~ 357 (363)
+++++++++..++|++++++||||+||||+||+++++
T Consensus 454 ~l~ellg~~~~~~i~i~~a~DGSGvGAAl~AA~~s~~ 490 (490)
T PLN02914 454 AVTELLGLELSKNIAIEHTKDGSGIGAALLAATNSKY 490 (490)
T ss_pred HHHHHhCcccCCcEEEEEccCchHHHHHHHHHHhhcC
Confidence 9999998877779999999999999999999999875
No 3
>PLN02362 hexokinase
Probab=100.00 E-value=1.1e-110 Score=853.69 Aligned_cols=358 Identities=59% Similarity=0.946 Sum_probs=332.9
Q ss_pred CCCChhhhHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecceecccCCceEEEecccceecCCCCCCcHHHHHHHHH
Q 017953 1 MTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAM 80 (363)
Q Consensus 1 ~~g~~~~lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al 80 (363)
|+|++++||||||+||.+|+++++.+.+....+++||||||||||+|+++++|+|++|||||++++++|+||+++|++||
T Consensus 136 ~~~~~~eLFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al 215 (509)
T PLN02362 136 MNSTSEVLFDFIASSLKQFVEKEENGSEFSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGAL 215 (509)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCccccccccccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHH
Confidence 57899999999999999999998754333234579999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceEEEEEeccHHhhhcccccCCCceEEEEeeccceeeeEcccCCCCcccCCCCCCCceEEEeeccCccCCCCCC
Q 017953 81 ERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPL 160 (363)
Q Consensus 81 ~r~~~~v~v~aivNDTVaTlla~ay~~~~~~iGlIlGTGtNacy~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~l~~ 160 (363)
+|++++|+|+||||||||||+|++|.+|+|.||+|+|||||+||+|++++|+|+++..+..++||||||||+|+++++|+
T Consensus 216 ~r~~l~v~v~AlvNDTVgTL~a~aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~ 295 (509)
T PLN02362 216 NRRGLDMRVAALVNDTVGTLALGHYHDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGNFWSSHLPR 295 (509)
T ss_pred HHcCCCcEEEEEEEcCHHHHHhhhcCCCCceEEEEEECCccceEeeehhhcccccccCCCCCcEEEEeeccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999976555667899999999999888999
Q ss_pred cccchhhhccCCCCCcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCCCCChHHHH
Q 017953 161 TEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVG 240 (363)
Q Consensus 161 T~~D~~~D~~s~~pg~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~ 240 (363)
|+||+++|..|.|||+|+|||||||||||||+|+||+++++++.||++ .|+.|.+||+|+|++||.|+.|+++++..++
T Consensus 296 T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvL~~l~~~~~lF~~-~~~~L~~~~~l~T~~ls~i~~d~s~~l~~~~ 374 (509)
T PLN02362 296 TSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRVILRMSQESDIFGP-VSSRLSTPFVLRTPSVAAMHEDDSPELQEVA 374 (509)
T ss_pred chHHHHHhcCCCCcCcchHHHHHhhccHHHHHHHHHHHHHhccccccC-CcHhhcCCCccccHHHHHHhcCCChhHHHHH
Confidence 999999999999999999999999999999999999999999999984 7889999999999999999999999999999
Q ss_pred HHHhhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCC----------CCCceEEEEEeceeecc
Q 017953 241 KKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRD----------GEKQKSVIALDGGLFEH 310 (363)
Q Consensus 241 ~il~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~----------~~~~~v~V~vdGS~~~~ 310 (363)
++|++.++++.++.+|+.++|+||++|.+|||||+||+|+||++|+++..... .+.++++||||||+|+|
T Consensus 375 ~~l~~~~~~~~~~~~~~~~v~~i~~~V~~RaArL~Aa~iaail~k~~~~~~~~~~~~~~~~~~~~~~~~~VavDGsvye~ 454 (509)
T PLN02362 375 RILKETLGISEVPLKVRKLVVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGITSGRSRSDIQIMRRTVVAVEGGLYTN 454 (509)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccCCCceEEEEEeCchhhc
Confidence 99999999987889999999999999999999999999999999998532100 01246899999999999
Q ss_pred cHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcchhh
Q 017953 311 YTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQYLE 359 (363)
Q Consensus 311 ~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~~~~~ 359 (363)
||.|+++++++++++++++...+|++.+++||||+||||+||+++++.+
T Consensus 455 yp~f~~~~~~~l~ell~~~~~~~v~i~~a~DGSgvGAAl~AA~~~~~~~ 503 (509)
T PLN02362 455 YTMFREYLHEALNEILGEDVAQHVILKATEDGSGIGSALLAASYSSYSV 503 (509)
T ss_pred CcCHHHHHHHHHHHHhCcccCceEEEEEccCchHHHHHHHHHHHHhhhh
Confidence 9999999999999999887778999999999999999999999999865
No 4
>PLN02596 hexokinase-like
Probab=100.00 E-value=1.8e-110 Score=847.91 Aligned_cols=351 Identities=59% Similarity=0.972 Sum_probs=331.4
Q ss_pred CCCChhhhHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecceecccCCceEEEecccceecCCCCCCcHHHHHHHHH
Q 017953 1 MTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAM 80 (363)
Q Consensus 1 ~~g~~~~lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al 80 (363)
|+|++++||||||+||++|+++++.+.....++.+||||||||||+|+++++|+|++| |||++++++|+||+++|++||
T Consensus 137 ~~~t~~eLFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSFP~~Q~si~~G~Li~W-KgF~~~~~vG~Dvv~lL~~Al 215 (490)
T PLN02596 137 LNGTSQELFDYIALELAKFVAEHPGDEADTPERVKKLGFTVSYPVDQAAASSGSAIKW-KSFSADDTVGKALVNDINRAL 215 (490)
T ss_pred hcCCHHHHHHHHHHHHHHHHHhhccccccCcccccccceEEeeeeeecCCCCEEEEEe-ccccCCCccCcHHHHHHHHHH
Confidence 5789999999999999999999875443333457999999999999999999999999 999999999999999999999
Q ss_pred HHhCCCceEEEEEeccHHhhhcccccCCCceEEEEeeccceeeeEcccCCCCcccCCCCCCCceEEEeeccCccCCCCCC
Q 017953 81 ERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPL 160 (363)
Q Consensus 81 ~r~~~~v~v~aivNDTVaTlla~ay~~~~~~iGlIlGTGtNacy~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~l~~ 160 (363)
+|++++|+|+||||||||||+|++|.+|+|+||+|+|||||+||+|++++|+|+++..+..++||||||||+|+...+|+
T Consensus 216 ~r~~l~v~v~AivNDTVgTL~a~aY~~~~~~iG~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~ 295 (490)
T PLN02596 216 EKHGLKIRVFALVDDTIGNLAGGRYYNKDTVAAVTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFNSCHLPI 295 (490)
T ss_pred HhcCCCceEEEEEEcCHHHHHhhhcCCCCeEEEEEEecccceEEEEEccccccccCCCCCCCeEEEEeccccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999977555668999999999998777999
Q ss_pred cccchhhhccCCCCCcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCCCCChHHHH
Q 017953 161 TEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVG 240 (363)
Q Consensus 161 T~~D~~~D~~s~~pg~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~ 240 (363)
|+||+++|+.|.|||+|+||||+||||||||+|+||++|++++.||++.+|+.|.+||+|+|++||.|+.|+++++..++
T Consensus 296 T~~D~~lD~~S~nPG~Q~fEKMiSG~YLGElvRlvl~~l~~~~~lF~~~~~~~L~~~~~l~T~~lS~i~~d~s~~~~~~~ 375 (490)
T PLN02596 296 TEFDASLDAESSNPGSRIFEKLTSGMYLGEIVRRVLLKMAEETALFGDTLPPKLTTPYLLRSPDMAAMHQDTSEDHEVVN 375 (490)
T ss_pred ChHHHHHhccCCCCCcchHHHHHhhhhHHHHHHHHHHHHHHhccccCCCCcHhhcCCCccccHHHHHHhcCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHH
Q 017953 241 KKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQS 320 (363)
Q Consensus 241 ~il~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~ 320 (363)
++|++.|+++.++.+|+.++|+||++|.+|||+|+||+|+||++|+++. ..++++||||||+|+|||.|++++++
T Consensus 376 ~~l~~~l~~~~~~~~d~~~lr~i~~~V~~RAArL~Aa~iaail~k~g~~-----~~~~~~VavDGSvye~~p~f~~~l~~ 450 (490)
T PLN02596 376 EKLKEIFGITDSTPMAREVVAEVCDIVAERGARLAGAGIVGIIKKLGRI-----ENKKSVVTVEGGLYEHYRVFRNYLHS 450 (490)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCceEEEEeCcceeeCcCHHHHHHH
Confidence 9999999998788999999999999999999999999999999999863 23579999999999999999999999
Q ss_pred HHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcch
Q 017953 321 TVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQY 357 (363)
Q Consensus 321 ~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~~~ 357 (363)
++++++|++...+|++.+++||||+||||+||+.++-
T Consensus 451 al~ellg~~~~~~i~~~~s~DGSG~GAAl~AA~~~~~ 487 (490)
T PLN02596 451 SVWEMLGSELSDNVVIEHSHGGSGAGALFLAACQTGE 487 (490)
T ss_pred HHHHHhCcccCCcEEEEEccCchhHHHHHHHHhhccC
Confidence 9999999877789999999999999999999998864
No 5
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=4e-103 Score=792.86 Aligned_cols=331 Identities=35% Similarity=0.541 Sum_probs=305.9
Q ss_pred ChhhhHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecceecccCCceEEEecccceec-----CCCCCCcHHHHHHH
Q 017953 4 SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSI-----EDTVGEDVVGELTK 78 (363)
Q Consensus 4 ~~~~lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP~~qt~~~~g~Li~wtKgF~~-----~~v~G~dv~~lL~~ 78 (363)
++++||||||+||.+|+++++.... ..+.+||||||||||+|+++++|+|++|||||++ ++++|+||+++|++
T Consensus 125 t~~~lFd~IA~~i~~fl~~~~~~~~--~~~~l~lGfTFSFP~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~ 202 (464)
T PTZ00107 125 TATDLFDHIAKSIKKMMEENGDPED--LNKPVPVGFTFSFPCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLND 202 (464)
T ss_pred CHHHHHHHHHHHHHHHHHhcccccc--ccccccceeEEeeeeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHH
Confidence 8999999999999999999862111 2357999999999999999999999999999999 88999999999999
Q ss_pred HHHHhCCCceEEEEEeccHHhhhcccccC----CCceEEEEeeccceeeeEcccCCCCcccCCCCCCCceEEEeeccCcc
Q 017953 79 AMERIGLDMRVAALVNDTIGTLAGGRYHN----KDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFR 154 (363)
Q Consensus 79 al~r~~~~v~v~aivNDTVaTlla~ay~~----~~~~iGlIlGTGtNacy~e~~~~i~k~~~~~~~~~~miINtEwG~fg 154 (363)
||+|++++|+|+||||||||||||++|.+ |+|+||+|+|||||+||+|+.... +..++|+||||||+||
T Consensus 203 Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~NacY~E~~~~~-------~~~~~~iINtEwG~F~ 275 (464)
T PTZ00107 203 AFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGSNACYFEPEVSA-------YGYAGTPINMECGNFD 275 (464)
T ss_pred HHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEeccccceeeehhhcc-------CCCCcEEEEeeccccC
Confidence 99999999999999999999999999999 999999999999999999964332 2345799999999997
Q ss_pred CCCCCCcccchhhhccCCCCCcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCCCC
Q 017953 155 SSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSP 234 (363)
Q Consensus 155 ~~~l~~T~~D~~~D~~s~~pg~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~ 234 (363)
+ .+|+|+||+++|+.|.|||+|+||||+||||||||+|+||+++++++ .|+.|.++|+|+|++||.|++|+++
T Consensus 276 ~-~lp~T~~D~~lD~~S~npg~Q~fEKmiSG~YLGEi~Rlvl~~l~~~~------~~~~l~~~~~~~t~~ls~i~~d~s~ 348 (464)
T PTZ00107 276 S-KLPITPYDLEMDWYTPNRGRQQFEKMISGAYLGEISRRLIVHLLQLK------APPKMWQSGSFESEDASMILNDQSP 348 (464)
T ss_pred C-CCCCChHHHHHhhcCCCCCcCchhhHHhhhhHHHHHHHHHHHHHhcC------CchhhcCCcccccHHHHhhhcCCCc
Confidence 4 59999999999999999999999999999999999999999998763 5778999999999999999999999
Q ss_pred ChHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhH
Q 017953 235 DLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKF 314 (363)
Q Consensus 235 ~~~~~~~il~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f 314 (363)
++..++++|++.+++. ++.+|+.++|+||++|++|||+|+||+|+||++|++.. .++++||||||+|+|||.|
T Consensus 349 ~l~~~~~~l~~~~~~~-~~~~d~~~lr~i~~~V~~RAA~L~Aa~iaail~k~~~~------~~~~~VgvDGSv~~~~p~f 421 (464)
T PTZ00107 349 DLQFSRQVIKEAWDVD-LTDEDLYTIRKICELVRGRAAQLAAAFIAAPAKKTRTV------QGKATVAIDGSVYVKNPWF 421 (464)
T ss_pred hHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CCceEEEEeCcceecCccH
Confidence 9999999999989986 78899999999999999999999999999999999863 2579999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcchh
Q 017953 315 SACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQYL 358 (363)
Q Consensus 315 ~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~~~~ 358 (363)
+++++++++++++++ .++|+|++++||||+||||+||++++.|
T Consensus 422 ~~~~~~~l~~ll~~~-~~~v~l~~a~DGSg~GAAl~AA~~~~~~ 464 (464)
T PTZ00107 422 RRLLQEYINSILGPD-AGNVVFYLADDGSGKGAAIIAAMVANDK 464 (464)
T ss_pred HHHHHHHHHHHhCCC-CCcEEEEEccCchHHHHHHHHHHhccCC
Confidence 999999999999876 5699999999999999999999997653
No 6
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.1e-103 Score=781.89 Aligned_cols=345 Identities=48% Similarity=0.736 Sum_probs=324.2
Q ss_pred CCCChhhhHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecceecccCCceEEEecccceecCCCCCCcHHHHHHHHH
Q 017953 1 MTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAM 80 (363)
Q Consensus 1 ~~g~~~~lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al 80 (363)
|.|++++||||||+|+++|+.+++... . .++|+||||||||+|+++++|+|++|||||++++++|+||+++|+++|
T Consensus 126 m~gt~~~Lfd~Ia~~l~~F~~~~~~~~-~---~~l~lgFTFSfP~~Q~si~~g~L~~wTkGf~~~~~~g~Dvv~~L~eal 201 (474)
T KOG1369|consen 126 MQGTGEELFDFIARCLADFLDKMGLKG-A---SKLPLGFTFSFPCRQTSIDKGTLIRWTKGFKATDCEGEDVVRLLREAI 201 (474)
T ss_pred HcCchHHHHHHHHHHHHHHHHHhcccc-c---cccccceEEeeeeeecccccceEEEecccccchhhhcchHHHHHHHHH
Confidence 578999999999999999999988642 1 129999999999999999999999999999999999999999999999
Q ss_pred HHhCCC-ceEEEEEeccHHhhhcccccCCCceEEEEeeccceeeeEcccCCCCcccCCCCCCCceEEEeeccCccC--CC
Q 017953 81 ERIGLD-MRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRS--SH 157 (363)
Q Consensus 81 ~r~~~~-v~v~aivNDTVaTlla~ay~~~~~~iGlIlGTGtNacy~e~~~~i~k~~~~~~~~~~miINtEwG~fg~--~~ 157 (363)
+|++++ ++|+|++|||||||++|+|.+|+|.||+|+|||||+||+|+.++|+|+++..... +||||||||+||+ ..
T Consensus 202 ~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~igvI~GTGtNacY~e~~~~i~k~~~~~~~~-~miIN~EWG~F~~~~~~ 280 (474)
T KOG1369|consen 202 KRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIGVIFGTGTNACYMEDMRNIEKVEGDAGRG-PMCINTEWGAFGDNSLD 280 (474)
T ss_pred HHcCCcceEEEEEEecCHHhHhhceecCCCcEEEEEECCCccceeeeeccchhhcccccCCC-ceEEEccccCCCccccc
Confidence 999997 9999999999999999999999999999999999999999999999999854333 8999999999995 45
Q ss_pred CCCcccchhhhccCCCCCcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCCCCChH
Q 017953 158 LPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLR 237 (363)
Q Consensus 158 l~~T~~D~~~D~~s~~pg~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~ 237 (363)
+|+|+||..+|.+|+|||+|.||||+||||||||+|++|+++.+++.||+++. +.+ +|+.|+|+++|+|++|+++++.
T Consensus 281 l~~T~yD~~vD~eS~npG~~~~EKmisGmYLGEivR~vLl~m~~~~~lf~~~~-~~l-~p~~~~T~~~S~i~~D~~~~l~ 358 (474)
T KOG1369|consen 281 LPRTEYDVVVDEESLNPGKQLFEKMISGMYLGEIVRLVLLDLLEEGLLFGGQS-TKL-TPFIFETKYVSAIEEDDTGALQ 358 (474)
T ss_pred cchhhHHHHHhhhcCCcchhHHHHHhccccHHHHHHHHHHHHhHhhhhhcccc-ccc-CcceeccchHHhHhcCCchHHH
Confidence 89999999999999999999999999999999999999999999999999988 667 9999999999999999999999
Q ss_pred HHHHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHH
Q 017953 238 VVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSAC 317 (363)
Q Consensus 238 ~~~~il~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~ 317 (363)
.+.. +.+.++++..+.+|+..|+++|+.|++|||+|+||+|+||++++++. ....++||+|||+|++||.|+++
T Consensus 359 ~~~~-~~~~l~~~~~~~~~r~~V~~vc~~v~~RaA~L~aagIaail~k~~~~-----~~~~~~VgvdGsly~~yP~f~~~ 432 (474)
T KOG1369|consen 359 ETEK-ILDLLGLETTTTEDRKLVREVCDVVSRRAARLAAAGIAAILNKTGEL-----SRKRVTVGVDGSLYKNHPFFREY 432 (474)
T ss_pred HHHH-HHHhhCCCcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc-----ccCceEEEeccchhHcCchHHHH
Confidence 9998 77779998889999999999999999999999999999999999962 34689999999999999999999
Q ss_pred HHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcchhhh
Q 017953 318 MQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQYLEV 360 (363)
Q Consensus 318 ~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~~~~~~ 360 (363)
|++++++|+|+ .++|.+.+++||||+|||++||++++.++.
T Consensus 433 m~~~l~eLlg~--~~~v~i~~s~dgSg~GAAL~Aav~~~~~~~ 473 (474)
T KOG1369|consen 433 LKEALRELLGP--SIHVKLVLSEDGSGRGAALIAAVASRLKQE 473 (474)
T ss_pred HHHHHHHHhCC--CceEEEEECCCCccccHHHHHHHHhhhhcc
Confidence 99999999984 479999999999999999999999999875
No 7
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-88 Score=662.88 Aligned_cols=344 Identities=41% Similarity=0.660 Sum_probs=324.1
Q ss_pred ChhhhHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecceecccCCceEEEecccceecCCCCCCcHHHHHHHHHHHh
Q 017953 4 SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERI 83 (363)
Q Consensus 4 ~~~~lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~ 83 (363)
+.++||+|||++++.|+++++... ...++++|||||||+.|+++++|.|++|||||++++++|+||+++|+++|++|
T Consensus 118 ~~~~l~~~iadrl~~fi~~~~~~~---~~~~l~~gfTFSYP~~q~sin~g~l~rwTKgf~i~e~ig~dvv~~l~e~l~~r 194 (466)
T COG5026 118 SRDELFGFIADRLAAFIKEQHPSG---YGSKLPIGFTFSYPLNQTSINEGQLIRWTKGFDIPEVIGTDVVRLLQEALSAR 194 (466)
T ss_pred ChHHHHHHHHHHHHHHHHHhCchh---ccCcceeeEEEeccccccccCceeeEeecccCcchhhhhhhHHHHHHHHHHhc
Confidence 679999999999999999998754 24589999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeccHHhhhcccccCCCceEEEEeeccceeeeEcccCCCCcccCC-CCCCCceEEEeeccCccCCC--CCC
Q 017953 84 GLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGL-LPKSGEMVINMEWGNFRSSH--LPL 160 (363)
Q Consensus 84 ~~~v~v~aivNDTVaTlla~ay~~~~~~iGlIlGTGtNacy~e~~~~i~k~~~~-~~~~~~miINtEwG~fg~~~--l~~ 160 (363)
++|++|+||+|||||||||+.|+++++.||+|+|||||+||+|+.+.|||+... .+.+.+|+||+|||+|++.. +|+
T Consensus 195 ~~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~~d~~~~~~pm~iN~EwGsfdn~~~~Lp~ 274 (466)
T COG5026 195 NLPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLPRDDLPETGPMLINCEWGSFDNELSVLPR 274 (466)
T ss_pred CCceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCccccccccCCeEEEecccccCcceeeccc
Confidence 999999999999999999999999999999999999999999999999999843 34567899999999998655 899
Q ss_pred cccchhhhccCCCCCcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCCCCChHHHH
Q 017953 161 TEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVG 240 (363)
Q Consensus 161 T~~D~~~D~~s~~pg~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~ 240 (363)
|+||..+|..|++||.|.||||+||+|||||+|++|+++..++.+|.++.|+++..|+.++|+.+|.|+.|++.+++.+.
T Consensus 275 t~ydv~idq~s~~pg~~~~Ek~~sG~yLGellr~~L~~l~~qg~~~~~q~~~~~~~p~~l~t~~~s~i~~D~~~nl~~t~ 354 (466)
T COG5026 275 TKYDVLIDQESPNPGHQIFEKMSSGMYLGELLRLILRNLYEQGLIFNGQDPEKLTDPFALSTSVLSRIEEDPFENLRNTL 354 (466)
T ss_pred cceeeeeccCCCCcchHHHhhhhcceeHHHHHHHHHHHHHHHHhhccccchhhcccceeeecchhhhhccccccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHH
Q 017953 241 KKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQS 320 (363)
Q Consensus 241 ~il~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~ 320 (363)
..+++.|+.+ .+.++++.|+.+|++|.+|||||+|+.++|++.+++.. .+..|+.|||+|++||.|++++.+
T Consensus 355 ~~f~~~~~~~-tt~eer~lI~~l~~~i~~RAArlaa~~iaAi~~ktG~~-------k~~~v~~dGsv~e~yp~f~~~~~~ 426 (466)
T COG5026 355 TTFLNDFRAP-TTKEERKLIRRLVELIGRRAARLAAVPIAAIVIKTGAY-------KAYHVGADGSVIERYPGFRSMLRE 426 (466)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHHHHhhhHHHhhhhcCCC-------ccceeeeecchhhhchhHHHHHHH
Confidence 9999999996 88999999999999999999999999999999999962 345699999999999999999999
Q ss_pred HHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcchhh
Q 017953 321 TVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQYLE 359 (363)
Q Consensus 321 ~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~~~~~ 359 (363)
++++++|.... +|++++++||||+|||++|+++.+-+.
T Consensus 427 ~l~~~~g~~~~-~i~i~~a~dgsglGAAl~a~~~~k~~~ 464 (466)
T COG5026 427 ALKALLGEEGE-KIKIKPAEDGSGLGAALCALLAQKPKA 464 (466)
T ss_pred HHHHhhcccCc-eeeEEecccCcchHHHHHHHHhccccc
Confidence 99999996554 999999999999999999998877554
No 8
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=100.00 E-value=1.2e-73 Score=537.54 Aligned_cols=241 Identities=43% Similarity=0.718 Sum_probs=216.1
Q ss_pred CceEEEEeeccceeeeEcccCCCCcccCCCCCCCceEEEeeccCccCC--CCCCcccchhhhccCCCCCcceeeeecccc
Q 017953 109 DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSS--HLPLTEYDEALDTESLNPGEQIFEKIISGM 186 (363)
Q Consensus 109 ~~~iGlIlGTGtNacy~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~--~l~~T~~D~~~D~~s~~pg~q~~EkmvsG~ 186 (363)
+|+||+|+|||||+||+|+.++|+|+++ ..++||||||||+|++. .+|+|+||+.+|+.|+|||+|+||||+|||
T Consensus 1 ~~~iGlIlGTG~Na~Y~e~~~~i~~~~~---~~~~~iINtEwg~f~~~~~~~~~t~~D~~lD~~s~~pg~q~~EKmvsG~ 77 (243)
T PF03727_consen 1 ECRIGLILGTGTNACYMEKTSNIPKLKG---KDGKMIINTEWGNFDNGLLDLPRTEYDKQLDAESPNPGFQPFEKMVSGM 77 (243)
T ss_dssp TEEEEEEESSSEEEEEEEEGGG-TTSST---SSSEEEEEE-GGGTTTTTTTTTS-HHHHHHHHTSSSTTSSTTHHHTSHH
T ss_pred CcEEEEEEeCCeeEEEeeecccCccccc---cCCeEEEEeecCCCCCCCccCCCCcccHHHhhhhhccCceEEeeEecee
Confidence 4899999999999999999999999987 56789999999999653 379999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCCCCChHHHHHHHhhhhCCCCCCHHHHHHHHHHHHH
Q 017953 187 YLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDI 266 (363)
Q Consensus 187 YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~i~~~ 266 (363)
|||||+|++|+++++++.||++..|+.|.++|+|+|++||.|++|+++++..++.+|++.++++ ++.+|+.++|+||++
T Consensus 78 YLGEl~Rlvl~~l~~~~~lf~~~~~~~l~~~~~~~t~~~s~i~~d~~~~~~~~~~~l~~~~~~~-~t~~d~~~lr~I~~a 156 (243)
T PF03727_consen 78 YLGELVRLVLLDLIKEGLLFGGQDPEKLNTPYSFDTKFLSEIEEDPSDDLSETREILQEFFGLP-PTEEDRQILRRICEA 156 (243)
T ss_dssp HHHHHHHHHHHHHHHTTSSGGGS--TTTTSTTSS-HHHHHHHTCT-TTCHHHHHHHHHHCTTSS-S-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCccCCcchHHhcCCCcccHHHHhhhhhhcccchHHHHHHHhhccCCC-CCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 899999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHH
Q 017953 267 VATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIG 346 (363)
Q Consensus 267 V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~G 346 (363)
|++|||+|+|++|+||+.|+++... .+..+++||||||+|+|||.|++++++++++|+++. .++|+|++++||||+|
T Consensus 157 V~~RAA~L~Aa~iaail~~~~~~~~--~~~~~v~VavDGSv~~~~p~f~~~l~~~l~~L~~~~-~~~v~~~~~~dgsg~G 233 (243)
T PF03727_consen 157 VSTRAARLVAAAIAAILNKIRENKG--RPRREVTVAVDGSVYEKYPNFRERLQEALDELLPEE-GCKVEFVLSEDGSGVG 233 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCT--CSSEEEEEEEESHHHHHSTTHHHHHHHHHHHHSTT--CEEEEEEE-SSTHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhhhcccc--ccCCceEEEEeCcceeeCHHHHHHHHHHHHHhcccc-cceEEEEEecCchHHH
Confidence 9999999999999999999753221 234689999999999999999999999999999876 5789999999999999
Q ss_pred HHHHHHHhcc
Q 017953 347 AALLAASHSQ 356 (363)
Q Consensus 347 AAi~aa~~~~ 356 (363)
|||+||+++|
T Consensus 234 AAi~AA~a~r 243 (243)
T PF03727_consen 234 AAIAAAVACR 243 (243)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 9999999876
No 9
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=100.00 E-value=6.1e-35 Score=268.10 Aligned_cols=104 Identities=53% Similarity=0.883 Sum_probs=88.7
Q ss_pred CCCChhhhHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecceecccCCceEEEecccceecCCCCCCcHHHHHHHHH
Q 017953 1 MTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAM 80 (363)
Q Consensus 1 ~~g~~~~lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al 80 (363)
+.|++++||||||+||.+|+++++.. ..++++||||||||||+|+++++|+|++|||||++++++|+|++++|+++|
T Consensus 102 ~~~~~~~lFd~ia~~i~~f~~~~~~~---~~~~~l~lGfTFSFP~~q~~~~~g~li~wtKgf~~~~~~G~dv~~lL~~al 178 (206)
T PF00349_consen 102 MNGSGEELFDFIADCIAEFLKEHNLE---SRDEKLPLGFTFSFPVEQTSLNSGTLIRWTKGFDISGVVGKDVVELLQDAL 178 (206)
T ss_dssp HTSBHHHHHHHHHHHHHHHHHHTTTT---STTSEEEEEEEEESSEEESSTTEEEE----TT---BTGTTSBHHHHHHHHH
T ss_pred hcCCcccHHHHHHHHHHHHHHHhccc---ccccccceEEEEEEEEEeccCCCeEEEEeeccccccCCCCCccchhHHHHH
Confidence 36889999999999999999998753 135789999999999999999999999999999999999999999999999
Q ss_pred HHhCCC-ceEEEEEeccHHhhhcccccC
Q 017953 81 ERIGLD-MRVAALVNDTIGTLAGGRYHN 107 (363)
Q Consensus 81 ~r~~~~-v~v~aivNDTVaTlla~ay~~ 107 (363)
+|++++ |+|+||+|||||||||++|.|
T Consensus 179 ~r~~~~~v~v~aivNDTVgTLla~~Y~~ 206 (206)
T PF00349_consen 179 KRRGLPNVKVVAIVNDTVGTLLAGAYQD 206 (206)
T ss_dssp HHHTSSEEEEEEEE-HHHHHHHHHHTT-
T ss_pred HHhcccCcceEEEEECCHHHhhhhhcCC
Confidence 999997 999999999999999999975
No 10
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=98.41 E-value=9.1e-05 Score=71.89 Aligned_cols=267 Identities=18% Similarity=0.176 Sum_probs=147.8
Q ss_pred ChhhhHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecc--eecccCCceEEEecccceecCCCCCCcHHHHHHHHHH
Q 017953 4 SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFP--VRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAME 81 (363)
Q Consensus 4 ~~~~lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP--~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~ 81 (363)
+.+++++.|.+.|.+|+++.+.. ..-.+|+.+++| ++. ++|.+ .|+--+.. .+.++.+.|++.+
T Consensus 32 ~~~~~~~~l~~~i~~~~~~~~~~------~~~i~gIgva~pG~vd~---~~g~~-~~~~~~~w---~~~~l~~~l~~~~- 97 (318)
T TIGR00744 32 TPETIVDAIASAVDSFIQHIAKV------GHEIVAIGIGAPGPVNR---QRGTV-YFAVNLDW---KQEPLKEKVEARV- 97 (318)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCC------ccceEEEEEeccccccC---CCCEE-EecCCCCC---CCCCHHHHHHHHH-
Confidence 46788999999999999876522 123467777776 443 34553 33333332 3456777766544
Q ss_pred HhCCCceEEEEEeccHHhhhcccc----cCCCceEEEEeeccceeeeEcccCCCCcccCCCCCCCceEEEeeccCccCCC
Q 017953 82 RIGLDMRVAALVNDTIGTLAGGRY----HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSH 157 (363)
Q Consensus 82 r~~~~v~v~aivNDTVaTlla~ay----~~~~~~iGlIlGTGtNacy~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~ 157 (363)
++| +.+.||+-+..++-.+ .+.+.-+-+.+|||..++++.+-.-+.-..+....-++|.++-
T Consensus 98 --~~p---v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGiG~giv~~G~~~~G~~g~agEiGh~~v~~--------- 163 (318)
T TIGR00744 98 --GLP---VVVENDANAAALGEYKKGAGKGARDVICITLGTGLGGGIIINGEIRHGHNGVGAEIGHIRMVP--------- 163 (318)
T ss_pred --CCC---EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCccEEEEEECCEEeecCCCCCcccCceEeCC---------
Confidence 444 5688999988665444 3557789999999999999864111110000000112222211
Q ss_pred CCCcccchhhhccCCC-CCcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCCCCCh
Q 017953 158 LPLTEYDEALDTESLN-PGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDL 236 (363)
Q Consensus 158 l~~T~~D~~~D~~s~~-pg~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~ 236 (363)
|- ...-. -....+|.++|+.-|-+..+.. . ... ..++.+ ...........
T Consensus 164 ------~g---~~~C~cG~~gclE~~~s~~al~~~~~~~---~----~~~--~~~~~~-----------~~~~~~~~~~~ 214 (318)
T TIGR00744 164 ------DG---RLLCNCGKQGCIETYASATGLVRYAKRA---N----AKP--ERAEVL-----------LALGDGDGISA 214 (318)
T ss_pred ------CC---CcccCCCCcchHHHHhCHHHHHHHHHHH---h----ccc--cccchh-----------hcccccCCCCH
Confidence 00 00001 1235788888887664332221 0 000 000000 00000000122
Q ss_pred HHHHHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHH
Q 017953 237 RVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSA 316 (363)
Q Consensus 237 ~~~~~il~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~ 316 (363)
..+.+..++ - | ..|..+.+|+++.++.+|+.++...+. + .|-+.|++.+..+.|.+
T Consensus 215 ~~i~~~~~~------g---D-----~~a~~i~~~~~~~L~~~i~~~~~~~dP--------~--~IvlgG~~~~~~~~~~~ 270 (318)
T TIGR00744 215 KHVFVAARQ------G---D-----PVAVDSYREVARWAGAGLADLASLFNP--------S--AIVLGGGLSDAGDLLLD 270 (318)
T ss_pred HHHHHHHHC------C---C-----HHHHHHHHHHHHHHHHHHHHHHHHhCC--------C--EEEECChhhhCcHHHHH
Confidence 222222221 0 1 346678899999999999999887653 1 36679999988899999
Q ss_pred HHHHHHHHHhCCCCcccEEEEE---cCCchHHHHHHHH
Q 017953 317 CMQSTVKELLGEEVSETVVIEH---SNDGSGIGAALLA 351 (363)
Q Consensus 317 ~~~~~l~~l~~~~~~~~v~l~~---~~DgS~~GAAi~a 351 (363)
.+++.+++..-+.....+.+.. .++...+|||..+
T Consensus 271 ~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~ 308 (318)
T TIGR00744 271 PIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLA 308 (318)
T ss_pred HHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHH
Confidence 9999998754321122333433 3556788988665
No 11
>PRK09698 D-allose kinase; Provisional
Probab=98.18 E-value=0.00035 Score=67.45 Aligned_cols=246 Identities=16% Similarity=0.118 Sum_probs=136.8
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecceecccCCceEEEecccceecCCCCCCcHHHHHHHHHHHhCCC
Q 017953 7 ELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLD 86 (363)
Q Consensus 7 ~lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~~~ 86 (363)
+.++.+++.|.+++.+... +..-+|+.+.-|++. +.+.++ ++..+..++..+.++.+.|++.+ ++|
T Consensus 42 ~~~~~l~~~i~~~~~~~~~-------~i~gigia~pG~vd~---~~g~i~-~~~~~~~~~~~~~~l~~~l~~~~---~~p 107 (302)
T PRK09698 42 DLVSGLGEMIDEYLRRFNA-------RCHGIVMGFPALVSK---DRRTVI-STPNLPLTALDLYDLADKLENTL---NCP 107 (302)
T ss_pred HHHHHHHHHHHHHHHHcCC-------CeeEEEEeCCcceeC---CCCEEE-ecCCCCccccccCCHHHHHHHHh---CCC
Confidence 3489999999999987531 223455555555654 345444 34334333456778888887664 444
Q ss_pred ceEEEEEeccHHhhhccccc---CCCceEEEEeeccceeeeEcccCCCCcccCCCCCCCceEEEeeccCccCCCCCCccc
Q 017953 87 MRVAALVNDTIGTLAGGRYH---NKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEY 163 (363)
Q Consensus 87 v~v~aivNDTVaTlla~ay~---~~~~~iGlIlGTGtNacy~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~l~~T~~ 163 (363)
+.+.||..+..++-.+. .++..+.+-+|||.-++++.+=.-+.-..+....-++|.++-...
T Consensus 108 ---v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtGIG~giv~~G~~~~G~~g~agEiGh~~v~~~~~------------ 172 (302)
T PRK09698 108 ---VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDMTQ------------ 172 (302)
T ss_pred ---EEEcchHhHHHHHHHHhcCCCCceEEEEEecCceEEEEEECCEEeeCCCCCccccCceEeeCCCc------------
Confidence 66889999876654332 345789999999999999874211111110000112333321000
Q ss_pred chhhhccCCCCCcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCCCCChHHHHHHH
Q 017953 164 DEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKL 243 (363)
Q Consensus 164 D~~~D~~s~~pg~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il 243 (363)
.-.-.+ .-.+|.++|+.-|-+..+. . + ++ . + ...++
T Consensus 173 ----~C~CG~--~gclE~~~S~~al~~~~~~-------~---~----~~-------~--------------~---~~~l~ 208 (302)
T PRK09698 173 ----HCGCGN--PGCLETNCSGMALRRWYEQ-------Q---P----RD-------Y--------------P---LSDLF 208 (302)
T ss_pred ----ccCCCC--ccchHhhcCHHHHHHHHHH-------h---c----CC-------C--------------C---HHHHH
Confidence 000111 3568999998754222111 0 0 00 0 0 11122
Q ss_pred hhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHHHHH
Q 017953 244 KDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVK 323 (363)
Q Consensus 244 ~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~~l~ 323 (363)
+. .+ + + .+.++.++.+|.+|+.++...+. + .|-+.|.+.+..+.|.+.+++.++
T Consensus 209 ~~-~~----~--~---------~~~~~~~~~la~~l~~li~~ldP--------~--~IvlgG~~~~~~~~~~~~l~~~~~ 262 (302)
T PRK09698 209 VH-AG----D--H---------PFIQSLLENLARAIATSINLFDP--------D--AIILGGGVMDMPAFPRETLIAMIQ 262 (302)
T ss_pred HH-cC----C--H---------HHHHHHHHHHHHHHHHHHHHhCC--------C--EEEEcCccccCchhHHHHHHHHHH
Confidence 21 11 0 0 13456667788888888777653 2 355688888877778888888888
Q ss_pred HHhC-CCCcccEEEEE---cCCchHHHHHHHH
Q 017953 324 ELLG-EEVSETVVIEH---SNDGSGIGAALLA 351 (363)
Q Consensus 324 ~l~~-~~~~~~v~l~~---~~DgS~~GAAi~a 351 (363)
+.+- +.....+.+.. .+|...+|||..+
T Consensus 263 ~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~ 294 (302)
T PRK09698 263 KYLRKPLPYEVVRFIYASSSDFNGAQGAAILA 294 (302)
T ss_pred HHccCccccCCcEEEECCcCCcccHHhHHHHH
Confidence 7653 21112344444 3556688998775
No 12
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.03 E-value=0.0017 Score=62.72 Aligned_cols=258 Identities=18% Similarity=0.196 Sum_probs=140.9
Q ss_pred ChhhhHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecceecccCCceEEEecccceecCCCCCCcHHHHHHHHHHHh
Q 017953 4 SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERI 83 (363)
Q Consensus 4 ~~~~lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~ 83 (363)
+.+++.+.|++.+.++..... ....+|+.+.=|++. +.|.+. ++ ..++..+-++.+.|++.+
T Consensus 35 ~~~~~~~~i~~~i~~~~~~~~--------~~~~igia~pG~vd~---~~g~~~-~~---~~~~w~~~~l~~~l~~~~--- 96 (303)
T PRK13310 35 SYDAFLDAVCELVAEADQRFG--------CKGSVGIGIPGMPET---EDGTLY-AA---NVPAASGKPLRADLSARL--- 96 (303)
T ss_pred CHHHHHHHHHHHHHHHHhhcC--------CcceEEEeCCCcccC---CCCEEe-cc---CcccccCCcHHHHHHHHH---
Confidence 456777777777777654422 012355555556653 345543 32 223345667777776654
Q ss_pred CCCceEEEEEeccHHhhhccccc----CCCceEEEEeeccceeeeEcccCCCCcccCCCCCCCceEEEee-ccCccCCCC
Q 017953 84 GLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINME-WGNFRSSHL 158 (363)
Q Consensus 84 ~~~v~v~aivNDTVaTlla~ay~----~~~~~iGlIlGTGtNacy~e~~~~i~k~~~~~~~~~~miINtE-wG~fg~~~l 158 (363)
++| +.+-||.-+-.++-.+. +.+..+.+.+|||.-++++.+=.-+.-..+....-++|.|+-. ...+|...
T Consensus 97 ~~p---V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGiG~giv~~G~l~~G~~g~aGEiGH~~v~~~~~~~~g~~~- 172 (303)
T PRK13310 97 GRD---VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVFNGKPISGRSYITGEFGHMRLPVDALTLLGWDA- 172 (303)
T ss_pred CCC---eEEeccHhHHHHHHhhhccccCCCcEEEEEecCceEEEEEECCEEeeCCCCccccccceeecccccccccccC-
Confidence 454 56789998776665543 4578899999999999998752111111110011233443211 00000000
Q ss_pred CCcccchhhhccCCCCCcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCCCCChHH
Q 017953 159 PLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRV 238 (363)
Q Consensus 159 ~~T~~D~~~D~~s~~pg~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~ 238 (363)
| . ..-.-.....+|..+||.-+-+..|.. . + . + + +...
T Consensus 173 ~------~--~~C~CG~~gclE~~~S~~al~~~~~~~----------~-~--~-----~--~--------------~~~~ 210 (303)
T PRK13310 173 P------L--RRCGCGQKGCIENYLSGRGFEWLYQHY----------Y-G--E-----P--L--------------QAPE 210 (303)
T ss_pred C------C--ccCCCCCcchHHHhhcHHHHHHHHHHh----------c-c--C-----C--C--------------CHHH
Confidence 0 0 000011246889999987654333310 0 0 0 0 0 1111
Q ss_pred HHHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHH
Q 017953 239 VGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACM 318 (363)
Q Consensus 239 ~~~il~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~ 318 (363)
+.+...+ - | ..+..+.+|+++..|.+|+.++..++. + .|-+.|.+.+ .|.|.+.+
T Consensus 211 l~~~~~~------g---d-----~~a~~~~~~~~~~la~~l~n~~~~ldP--------~--~IvlgG~~~~-~~~~~~~l 265 (303)
T PRK13310 211 IIALYYQ------G---D-----EQAVAHVERYLDLLAICLGNILTIVDP--------H--LVVLGGGLSN-FDAIYEQL 265 (303)
T ss_pred HHHHHHc------C---C-----HHHHHHHHHHHHHHHHHHHHHHHHcCC--------C--EEEECCcccC-hHHHHHHH
Confidence 1111111 0 1 345568899999999999999998864 2 3445777776 78888999
Q ss_pred HHHHHHHhCCCCcccEEEEE---cCCchHHHHHHHH
Q 017953 319 QSTVKELLGEEVSETVVIEH---SNDGSGIGAALLA 351 (363)
Q Consensus 319 ~~~l~~l~~~~~~~~v~l~~---~~DgS~~GAAi~a 351 (363)
++.+++..-+.. ..+.+.. .+|...+|||..+
T Consensus 266 ~~~~~~~~~~~~-~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 266 PKRLPRHLLPVA-RVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HHHHHHHhcccc-cCceEEEcccCchHHHHhHHHHh
Confidence 999986542211 2344443 4466778988765
No 13
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=97.95 E-value=0.0013 Score=63.06 Aligned_cols=271 Identities=17% Similarity=0.182 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCccc-cceeeeecceecccCCceEEEecccceecCCCCCCcHHHHHHHHHHHhCC-Cce
Q 017953 11 YIAAALAKFVATEGEGFHVSPGRQR-ELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGL-DMR 88 (363)
Q Consensus 11 ~iA~~i~~fl~~~~~~~~~~~~~~l-~lGftFSFP~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~~-~v~ 88 (363)
-+++.|++++.+...+....+..++ .||+-|| ++.-.|-++-|.+.|+.+-. .++
T Consensus 44 ~~~~rie~~i~~A~~k~g~d~~~~lr~lgL~lS-----------------------g~d~e~~~~~lv~~~R~~fps~ae 100 (336)
T KOG1794|consen 44 TCASRIEDMIREAKEKAGWDKKGPLRSLGLGLS-----------------------GTDQEDKNRKLVTEFRDKFPSVAE 100 (336)
T ss_pred HHHHHHHHHHHHHHhhcCCCccCccceeeeecc-----------------------cCCchhHHHHHHHHHHHhccchhh
Confidence 4678888888776543322221111 2344333 34446666777777765433 345
Q ss_pred EEEEEeccHHhhhcccccCCCceEEEEeeccceeeeEcccCCCCcccCCCCCCCceEEEeecc-CccCCCCCCcccchhh
Q 017953 89 VAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWG-NFRSSHLPLTEYDEAL 167 (363)
Q Consensus 89 v~aivNDTVaTlla~ay~~~~~~iGlIlGTGtNacy~e~~~~i~k~~~~~~~~~~miINtEwG-~fg~~~l~~T~~D~~~ 167 (363)
=..|.||++++|.|+-- ...--|-||-|||+||=-..+-....+.. .-++|+= .|| .|. .-+|-+---+
T Consensus 101 ~~~v~sDa~~sl~a~t~-g~~~GiVLiaGTgs~crl~~~DGs~~~~g----gwg~~iG--d~GSayw---ia~~Avq~vf 170 (336)
T KOG1794|consen 101 NFYVTSDADGSLAAATP-GGEGGIVLIAGTGSNCRLVNPDGSEKGAG----GWGHMIG--DGGSAYW---IARQAVQMVF 170 (336)
T ss_pred eeeeehhHHHHHhhcCC-CCCCcEEEEecCCceeEEECCCCCccCCC----CCCCccC--CCcchhh---hhhhhhhhee
Confidence 57889999999998743 33455889999999975554432222211 1122321 122 121 2233332223
Q ss_pred hccCCCCCcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCCCCChHHHHHHHhhhh
Q 017953 168 DTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDIL 247 (363)
Q Consensus 168 D~~s~~pg~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~ 247 (363)
|.. .+-+.|+ --...+..+++.++ + +++.+. .+...-+| .+..++.....+ +
T Consensus 171 da~-dg~e~~~-------~~i~~v~~tif~~~-------~--l~d~l~--------ml~~~Ys~--f~k~riA~f~~k-l 222 (336)
T KOG1794|consen 171 DAE-DGFENMM-------DKIKDVKQTIFKHF-------N--LRDRLQ--------MLEHLYSD--FDKHRIALFTEK-L 222 (336)
T ss_pred ehh-cCccccc-------chHHHHHHHHHHHc-------C--CCCHHH--------HHHHHHhc--chHHHHHHHHHH-H
Confidence 221 1222222 11233333433332 1 221110 01011111 122222222221 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHHHHHHHhC
Q 017953 248 EISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLG 327 (363)
Q Consensus 248 ~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~~l~~l~~ 327 (363)
.+..++=-.+++-|.++|+-..+-.+.|++..+..... +.....|-+.|+++..+...++-....+..
T Consensus 223 ------a~~ae~Gd~~~~~ifr~Ag~~Lg~~V~aVl~~l~~~~k---~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~--- 290 (336)
T KOG1794|consen 223 ------AEHAEIGDPLSAEIFRNAGETLGRHVVAVLPQLPPTLK---KGKTLPIVCVGGVFDSWDLLQEGFLDSLSD--- 290 (336)
T ss_pred ------HhhhhccCHHHHHHHHHHHHHHHHHHHHHHhhcCchhc---ccCcceEEEEcchhhHHHHHHHHHHHHhhc---
Confidence 01111112456678899999999999999999875322 112456888999998777666655555443
Q ss_pred CCCcccEEEEEcCCchHHHHHHHHHHh
Q 017953 328 EEVSETVVIEHSNDGSGIGAALLAASH 354 (363)
Q Consensus 328 ~~~~~~v~l~~~~DgS~~GAAi~aa~~ 354 (363)
...-..+++..-+++|.+|||+.||-.
T Consensus 291 ~~~f~~~~l~~~k~ssAvgAA~laa~~ 317 (336)
T KOG1794|consen 291 TRGFERVELYRPKESSAVGAAILAASL 317 (336)
T ss_pred ccCccceEEEeecccchHHHHHHhhhh
Confidence 222246899999999999999999743
No 14
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=97.83 E-value=0.0042 Score=59.65 Aligned_cols=244 Identities=16% Similarity=0.124 Sum_probs=135.1
Q ss_pred ChhhhHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecceecccCCceEEEecccceecCCCCCCcHHHHHHHHHHHh
Q 017953 4 SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERI 83 (363)
Q Consensus 4 ~~~~lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~ 83 (363)
+.+++.+.|++.+.++..+ ...+|+++.-|++. +....+. .....+..+.|+.+.|++.+
T Consensus 37 ~~~~~~~~i~~~i~~~~~~-----------~~~igi~~pG~vd~-----~~~~~~~-~~~~~~w~~~~l~~~l~~~~--- 96 (291)
T PRK05082 37 TPEALRQALSALVSPLQAQ-----------ADRVAVASTGIIND-----GILTALN-PHNLGGLLHFPLVQTLEQLT--- 96 (291)
T ss_pred CHHHHHHHHHHHHHHhhhc-----------CcEEEEeCcccccC-----CeeEEec-CCCCccccCCChHHHHHHHh---
Confidence 4566777777777776421 13466666666652 2222111 11122335678877776543
Q ss_pred CCCceEEEEEeccHHhhhcccc---cCCCceEEEEeeccceeeeEcccCCCCcccCCCCCCCceEEEeeccCccCCCCCC
Q 017953 84 GLDMRVAALVNDTIGTLAGGRY---HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPL 160 (363)
Q Consensus 84 ~~~v~v~aivNDTVaTlla~ay---~~~~~~iGlIlGTGtNacy~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~l~~ 160 (363)
++| +.|.||..+..++-.+ .+.+..+-+-+|||.-++++.+-.-..-. |-..|-+| +++
T Consensus 97 ~~p---v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~GiG~giv~~G~~~~G~------------~g~AGEiG--h~~- 158 (291)
T PRK05082 97 DLP---TIALNDAQAAAWAEYQALPDDIRNMVFITVSTGVGGGIVLNGKLLTGP------------GGLAGHIG--HTL- 158 (291)
T ss_pred CCC---EEEECcHHHHHHHHHHhcCCCCCCEEEEEECCCcceEEEECCEEeeCC------------CCcccccc--ceE-
Confidence 444 5688999998777644 25567889999999999998742111100 11122222 111
Q ss_pred cccchhhhccCCCCCcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCCCCChHHHH
Q 017953 161 TEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVG 240 (363)
Q Consensus 161 T~~D~~~D~~s~~pg~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~ 240 (363)
+|.. ...-.--....+|.++|+..| .|. .+. ++ ++ .+...+.
T Consensus 159 --v~~~-g~~c~CG~~GclE~~~S~~al---~~~-----~~~--~~----~~---------------------~~~~~i~ 200 (291)
T PRK05082 159 --ADPH-GPVCGCGRRGCVEAIASGRAI---AAA-----AQG--WL----AG---------------------CDAKTIF 200 (291)
T ss_pred --ecCC-CCCCCCCCcCchhhhcCHHHH---HHH-----HHH--hh----cC---------------------CCHHHHH
Confidence 1110 000001123488999998766 222 111 00 00 0111122
Q ss_pred HHHhhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHH
Q 017953 241 KKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQS 320 (363)
Q Consensus 241 ~il~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~ 320 (363)
+...+ - | ..|..+.+++++..|.+|+.++..++. + .|-+.|.+. ..+.|.+.+++
T Consensus 201 ~~~~~------g---d-----~~a~~~~~~~~~~la~~l~~l~~~~dp--------e--~IvlgG~~~-~~~~~~~~i~~ 255 (291)
T PRK05082 201 ERAGQ------G---D-----EQAQALINRSAQAIARLIADLKATLDC--------Q--CVVLGGSVG-LAEGYLELVQA 255 (291)
T ss_pred HHHHc------C---C-----HHHHHHHHHHHHHHHHHHHHHHHHhCC--------C--EEEEcCccc-cHHHHHHHHHH
Confidence 22211 0 1 235568899999999999999998864 2 355577765 46778888999
Q ss_pred HHHHHhCCCCcccEEEEEc---CCchHHHHHHHH
Q 017953 321 TVKELLGEEVSETVVIEHS---NDGSGIGAALLA 351 (363)
Q Consensus 321 ~l~~l~~~~~~~~v~l~~~---~DgS~~GAAi~a 351 (363)
+++++... ..+.+..+ +|.+.+|||..+
T Consensus 256 ~l~~~~~~---~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 256 YLAQEPAI---YHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred HHHhcccc---cCCeEEECccCCchhhhhHHHHh
Confidence 99875221 13445544 456778888764
No 15
>PRK09557 fructokinase; Reviewed
Probab=97.76 E-value=0.016 Score=55.99 Aligned_cols=251 Identities=20% Similarity=0.240 Sum_probs=136.3
Q ss_pred ChhhhHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecc--eecccCCceEEEecccceecCCCCCCcHHHHHHHHHH
Q 017953 4 SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFP--VRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAME 81 (363)
Q Consensus 4 ~~~~lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP--~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~ 81 (363)
+.+++.+.|++.+.+++.... ...|+..+.| ++. ++|.+......+ ..+.++.+.|++.+
T Consensus 35 ~~~~~~~~i~~~i~~~~~~~~----------~~~gIgi~~pG~vd~---~~g~i~~~~~~~----~~~~~l~~~l~~~~- 96 (301)
T PRK09557 35 DYQQTIEAIATLVDMAEQATG----------QRGTVGVGIPGSISP---YTGLVKNANSTW----LNGQPLDKDLSARL- 96 (301)
T ss_pred CHHHHHHHHHHHHHHHHhhcC----------CceEEEecCcccCcC---CCCeEEecCCcc----ccCCCHHHHHHHHH-
Confidence 345677777777777654421 1245555554 433 346555332221 13567777777766
Q ss_pred HhCCCceEEEEEeccHHhhhcccc----cCCCceEEEEeeccceeeeEcccCCCCcccCCCCCCCceEEEeeccCccCCC
Q 017953 82 RIGLDMRVAALVNDTIGTLAGGRY----HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSH 157 (363)
Q Consensus 82 r~~~~v~v~aivNDTVaTlla~ay----~~~~~~iGlIlGTGtNacy~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~ 157 (363)
++| +.+.||..+..++-.+ .+++..+-+.+|||.-++.+.+-.-+ .+ ..-.-.|.|.
T Consensus 97 --~~p---v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtGiG~giv~~G~l~---~G------~~g~aGEiGH----- 157 (301)
T PRK09557 97 --NRE---VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTGCGAGVAINGRVH---IG------GNGIAGEWGH----- 157 (301)
T ss_pred --CCC---EEEccchhHHHHHHHHhcccCCCCcEEEEEEccceEEEEEECCEEE---ec------CCCCCcccCc-----
Confidence 444 5577999988776644 34567789999999999998641111 11 1111122222
Q ss_pred CCCcccch-hh---hccCCCC-CcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCC
Q 017953 158 LPLTEYDE-AL---DTESLNP-GEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDT 232 (363)
Q Consensus 158 l~~T~~D~-~~---D~~s~~p-g~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~ 232 (363)
++....|. .. +...-.- ..-.+|..+|+..|-+..+.. .+ . + +
T Consensus 158 ~~v~~~~~~~~~~~~g~~c~cG~~GclE~~~S~~al~~~~~~~-----------~~--~-----~--~------------ 205 (301)
T PRK09557 158 NPLPWMDEDELRYRNEVPCYCGKQGCIETFISGTGFATDYRRL-----------SG--K-----A--L------------ 205 (301)
T ss_pred eecccccccccccCCCCcCCCCCCCEEeEEEcHHHHHHHHHHh-----------cc--C-----C--C------------
Confidence 11111000 00 1000000 135799999998764433221 00 0 0 0
Q ss_pred CCChHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccH
Q 017953 233 SPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYT 312 (363)
Q Consensus 233 ~~~~~~~~~il~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p 312 (363)
+...+.+...+ - | ..++.+.+|+++.+|.+|+.++...+. + .|-+-|.+.. .+
T Consensus 206 --~~~~l~~~~~~------g---d-----~~a~~~l~~~~~~La~~l~~l~~~ldP--------~--~IvlgG~~~~-~~ 258 (301)
T PRK09557 206 --KGSEIIRLVEE------G---D-----PVAELAFRRYEDRLAKSLAHVINILDP--------D--VIVLGGGMSN-VD 258 (301)
T ss_pred --CHHHHHHHHHc------C---C-----HHHHHHHHHHHHHHHHHHHHHHHHhCC--------C--EEEEcCcccc-hH
Confidence 11111121111 0 1 345678899999999999999887764 2 3556787776 46
Q ss_pred hHHHHHHHHHHHHhCCCCcccEEEE---EcCCchHHHHHHHH
Q 017953 313 KFSACMQSTVKELLGEEVSETVVIE---HSNDGSGIGAALLA 351 (363)
Q Consensus 313 ~f~~~~~~~l~~l~~~~~~~~v~l~---~~~DgS~~GAAi~a 351 (363)
.|.+.+++.+++..-+.. ..+.+. +.++...+|||..+
T Consensus 259 ~~~~~l~~~~~~~~~~~~-~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 259 RLYPTLPALLKQYVFGGE-CETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred HHHHHHHHHHHHHhcccc-cCCeEEEcccCCchhhhhhhHhh
Confidence 777788888876543211 133333 34566788988653
No 16
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.10 E-value=0.0023 Score=60.93 Aligned_cols=79 Identities=27% Similarity=0.407 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCC
Q 017953 262 ELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSND 341 (363)
Q Consensus 262 ~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~D 341 (363)
.++..|.++++..++-.+.+++.+..... .+ |.+-||++++.+ |.+.+++.|++-++.. .-..+...+.
T Consensus 193 ~~a~~Il~~a~~~la~~i~~~~~~~~~~~------~~--v~l~GGv~~~~~-~~~~l~~~l~~~~~~~--~~~~~~~~~~ 261 (271)
T PF01869_consen 193 EVARDILAEAADELAELIKAVLKRLGPEK------EP--VVLSGGVFKNSP-LVKALRDALKEKLPKV--PIIIPVEPQY 261 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTCCC------CS--EEEESGGGGCHH-HHHHHGGGS-HHHHCC--TCECECCGSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCC------Ce--EEEECCccCchH-HHHHHHHHHHHhcCCC--ceEECCCCCc
Confidence 45667889999999999999988876531 12 889999997755 5555677776654431 1245667788
Q ss_pred chHHHHHHHH
Q 017953 342 GSGIGAALLA 351 (363)
Q Consensus 342 gS~~GAAi~a 351 (363)
-+..|||+.|
T Consensus 262 ~~a~GAallA 271 (271)
T PF01869_consen 262 DPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHhC
Confidence 8899999876
No 17
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.2 Score=48.58 Aligned_cols=256 Identities=21% Similarity=0.223 Sum_probs=145.9
Q ss_pred hhhHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecceecccCCceEEEecccceecCCCCCCcHHHHHHHHHHHhCC
Q 017953 6 HELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGL 85 (363)
Q Consensus 6 ~~lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~~ 85 (363)
+++.+-|++.+++++..+. . ..-.+|+.++-|..... +..+.+.--+. ...+-|+.+.|++.+. +
T Consensus 44 ~~~~~~i~~~i~~~~~~~~-~------~~~~iGIgi~~pg~~~~---~~~~~~~~~~~--~~~~~~l~~~L~~~~~---~ 108 (314)
T COG1940 44 EAILEAILALVAELLKQAQ-G------RVAIIGIGIPGPGDVDN---GTVIVPAPNLG--WWNGVDLAEELEARLG---L 108 (314)
T ss_pred hHHHHHHHHHHHHHHHhcC-C------cCceEEEEeccceeccC---CcEEeecCCCC--ccccccHHHHHHHHHC---C
Confidence 3778889999999988763 1 12457777777766643 22121111111 1224566677766554 4
Q ss_pred CceEEEEEeccHHhhhccccc----CCCceEEEEeeccceeeeEcccCCCCcccCCCCCCCceEEEeeccCccCCCCCCc
Q 017953 86 DMRVAALVNDTIGTLAGGRYH----NKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLT 161 (363)
Q Consensus 86 ~v~v~aivNDTVaTlla~ay~----~~~~~iGlIlGTGtNacy~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~l~~T 161 (363)
|| .|-||+.+.-++-++. +.+..+-+.+|||.-++++.+=.-..-..+....-++|+++-...
T Consensus 109 Pv---~veNDan~aalaE~~~g~~~~~~~~~~i~~gtGIG~giv~~g~l~~G~~g~age~Gh~~v~~~g~---------- 175 (314)
T COG1940 109 PV---FVENDANAAALAEAWFGAGRGIDDVVYITLGTGIGGGIIVNGKLLRGANGNAGEIGHMVVDPDGE---------- 175 (314)
T ss_pred CE---EEecHHHHHHHHHHHhCCCCCCCCEEEEEEccceeEEEEECCEEeecCCCccccccceEECCCCc----------
Confidence 54 4559999999998885 357899999999999999875211110000000112343333222
Q ss_pred ccchhhhccCCCCCcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCCCCChHHHHH
Q 017953 162 EYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGK 241 (363)
Q Consensus 162 ~~D~~~D~~s~~pg~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~ 241 (363)
-.-+..-.+|...|+..+-+.. .+. .+..... . +.+.+.+
T Consensus 176 ---------c~cG~~GclE~~as~~al~~~~-------~~~-------~~~~~~~---~--------------~~~~i~~ 215 (314)
T COG1940 176 ---------CGCGRRGCLETYASGRAILRRA-------AEA-------LESEAGE---L--------------TAKDIFE 215 (314)
T ss_pred ---------cCCCCCCchHHhccHHHHHHHH-------Hhh-------ccccccC---c--------------CHHHHHH
Confidence 0122345678888887764432 100 0100000 0 1111222
Q ss_pred HHhhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEec-eeecccHhHHHHHHH
Q 017953 242 KLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDG-GLFEHYTKFSACMQS 320 (363)
Q Consensus 242 il~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdG-S~~~~~p~f~~~~~~ 320 (363)
...+ - | ..+..+.++.+...|.+|+.++.-.+.. .|-+-| ++-...+.+.+.+++
T Consensus 216 ~a~~------g---d-----~~a~~~~~~~~~~la~~ianl~~~~~P~----------~IvigG~g~~~~~~~~~~~l~~ 271 (314)
T COG1940 216 LAAA------G---D-----PLAKEVIERAADYLARGLANLINLLDPE----------VIVIGGGGVSALGDLLLPRLRK 271 (314)
T ss_pred HHHc------C---C-----HHHHHHHHHHHHHHHHHHHHHHHhcCCC----------eEEEECcccccchhHHHHHHHH
Confidence 1111 0 0 3455688999999999999998887642 344667 777777888888888
Q ss_pred HHHHHhCCC-Cc-ccEEEEEc-CCchHHHHHHHHHH
Q 017953 321 TVKELLGEE-VS-ETVVIEHS-NDGSGIGAALLAAS 353 (363)
Q Consensus 321 ~l~~l~~~~-~~-~~v~l~~~-~DgS~~GAAi~aa~ 353 (363)
.+....... .. ..+.-.+. .+.+.+|||..+..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~ga~~~~~~ 307 (314)
T COG1940 272 LLAKYLFPPVLRPRIVEAALGGNDAGLIGAALLALL 307 (314)
T ss_pred HHHHhhcchhcccchhhhhcccccccchhHHHHHHH
Confidence 887654331 11 11222233 68889999887753
No 18
>PRK12408 glucokinase; Provisional
Probab=96.42 E-value=0.45 Score=47.01 Aligned_cols=256 Identities=15% Similarity=0.094 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecceecccCCceEEEecccceecCCCCCCcHHHHHHHHHHHhCCCce
Q 017953 9 FDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMR 88 (363)
Q Consensus 9 Fd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~~~v~ 88 (363)
|+-+.+-|.+|+++ .. -+.|+.+++|=- ..++|++. .+ ..... .+.+ .|+++ +.+.
T Consensus 56 ~~~~~~~i~~~~~~-~~---------~~~~igIg~pG~--~~~~g~v~-~~-nl~w~-----~~~~----~l~~~-~~~~ 111 (336)
T PRK12408 56 YPSLAAILADFLAE-CA---------PVRRGVIASAGY--ALDDGRVI-TA-NLPWT-----LSPE----QIRAQ-LGLQ 111 (336)
T ss_pred ccCHHHHHHHHHhc-CC---------CcCEEEEEecCC--ceECCEEE-ec-CCCCc-----cCHH----HHHHH-cCCC
Confidence 33344556677665 21 134666666654 13457765 22 11111 1223 33332 3454
Q ss_pred EEEEEeccHHhhhccccc-------------CC-CceEEEEeeccceeeeEcccCCCCcccCCCCCCCceEEEeeccCcc
Q 017953 89 VAALVNDTIGTLAGGRYH-------------NK-DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFR 154 (363)
Q Consensus 89 v~aivNDTVaTlla~ay~-------------~~-~~~iGlIlGTGtNacy~e~~~~i~k~~~~~~~~~~miINtEwG~fg 154 (363)
.+.+.||--+.-++-.+. .. ...+.+.+|||..++.+.+-. .+....=.|+|...
T Consensus 112 ~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTGiGggivi~g~-----------~g~~~~agE~GH~~ 180 (336)
T PRK12408 112 AVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTGLGAALWIPNG-----------GRPVVLPTEAGQAA 180 (336)
T ss_pred eEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCcceEEEEEcCC-----------CceeeecCcccccc
Confidence 578899999999987766 22 467888899999999986421 22345566777552
Q ss_pred CCCCCCcccchhh-hccCCCCCcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCCC
Q 017953 155 SSHLPLTEYDEAL-DTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTS 233 (363)
Q Consensus 155 ~~~l~~T~~D~~~-D~~s~~pg~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~ 233 (363)
- .|.++....+ ...-...+.-.+|...||.-|..+.|..... . +. + +..++.
T Consensus 181 ~--~~~~~~~~~l~~~~~~~~~~~~~E~~~Sg~gL~~~~~~~~~~---~-----~~-~-----~~~~~~----------- 233 (336)
T PRK12408 181 L--AAASELEMQLLQHLLRTRTHVPIEHVLSGPGLLNLYRALCAL---R-----GA-T-----PVHASP----------- 233 (336)
T ss_pred C--CCCCHHHHHHHHHHHhhCCceeHhheecHHHHHHHHHHHHhh---c-----CC-C-----cccCCH-----------
Confidence 1 1222111110 0111223334699999999998877654210 0 00 0 000111
Q ss_pred CChHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecc-cH
Q 017953 234 PDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEH-YT 312 (363)
Q Consensus 234 ~~~~~~~~il~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~-~p 312 (363)
..+++. ..- - .| .+|..+.++.++..|.+++-+....+. ..-|-+-|++-.. .+
T Consensus 234 ------~~v~~~-a~~--g--gD-----~~A~~~~~~~~~~La~~i~nl~~~ldP---------e~GIvIGGGIs~~~~~ 288 (336)
T PRK12408 234 ------AAITAA-ALA--G--DD-----ALAHEALQVFCGFLGSVVGDMALAYGA---------RGGVYLAGGILPQIAD 288 (336)
T ss_pred ------HHHHHH-HHh--C--CC-----HHHHHHHHHHHHHHHHHHHHHHHHHCC---------CceEEEECchhHhHHh
Confidence 122211 000 0 01 345567888899999999999888764 2225567888655 34
Q ss_pred hHHHH--HHHHHHHHh-C-CCCcccEEEEEcCCchHHHHHHHH
Q 017953 313 KFSAC--MQSTVKELL-G-EEVSETVVIEHSNDGSGIGAALLA 351 (363)
Q Consensus 313 ~f~~~--~~~~l~~l~-~-~~~~~~v~l~~~~DgS~~GAAi~a 351 (363)
.+.+. +++.++... . ......|.+....|...+|||..+
T Consensus 289 ~l~~~~f~~~~~~~~~~~~~~~~~~I~~~~~~~agl~GAa~~~ 331 (336)
T PRK12408 289 FLARSDFVERFLNKGPMRPALEQVPVKLVEHGQLGVLGAASWY 331 (336)
T ss_pred hhcCHHHHHHHhccCchhhHhcCCCEEEEeCCChHHHHHHHHH
Confidence 44443 566555421 1 001134666665688889987443
No 19
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=95.84 E-value=0.51 Score=50.69 Aligned_cols=254 Identities=15% Similarity=0.190 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecceecccCCceEEEecccceecCCCCCCcHHHHHHHHHHHhCCCce
Q 017953 9 FDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMR 88 (363)
Q Consensus 9 Fd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~~~v~ 88 (363)
|+.+.+.|.+|+++.+. .+.-.+|+..-=|++...+.... +.|. + ++ +. |.++ +.+.
T Consensus 52 ~~~~~~~i~~~l~~~~~------~~~~~igig~pGpVd~~~~~~~n-l~w~--~--------~~-~~----l~~~-~g~~ 108 (638)
T PRK14101 52 YPTLTDAIRKYLKDVKI------GRVNHAAIAIANPVDGDQVRMTN-HDWS--F--------SI-EA----TRRA-LGFD 108 (638)
T ss_pred CCCHHHHHHHHHHhcCC------CCcceEEEEEecCccCCeeeecC-CCcE--e--------cH-HH----HHHH-cCCC
Confidence 56677888888876531 11233555555556542111100 1231 1 22 33 3332 3456
Q ss_pred EEEEEeccHHhhhccc--------cc----CCCceEEEEeec--cceeeeEcccCCCCcccCCCCCCCceEEEeeccCcc
Q 017953 89 VAALVNDTIGTLAGGR--------YH----NKDAIAAVILGT--GTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFR 154 (363)
Q Consensus 89 v~aivNDTVaTlla~a--------y~----~~~~~iGlIlGT--GtNacy~e~~~~i~k~~~~~~~~~~miINtEwG~fg 154 (363)
++.|.||--+.-++-. +. ..+..+.+++|| |...|.+-.. +.+.++.-+|+|...
T Consensus 109 ~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~~~~~~~~~~lGtGTGlG~a~lv~~-----------~g~~~~~g~E~GH~~ 177 (638)
T PRK14101 109 TLLVVNDFTALAMALPGLTDAQRVQVGGGTRRQNSVIGLLGPGTGLGVSGLIPA-----------DDRWIALGSEGGHAS 177 (638)
T ss_pred eEEEEchHHHHHcCCccCCHHHeEEeCCCCCCCCCcEEEEECCccceeeEEEec-----------CCeeEECCCCccccC
Confidence 7899999999888831 11 223457788755 5665433211 112244556887663
Q ss_pred CCCCCCcccchhh-hccCCCCCcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCCC
Q 017953 155 SSHLPLTEYDEAL-DTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTS 233 (363)
Q Consensus 155 ~~~l~~T~~D~~~-D~~s~~pg~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~ 233 (363)
- .|.++-...+ .....+.|.-.+|..+||.-|..+.|..... .+ . + .+-.++.
T Consensus 178 ~--~~~~~~e~~~~~~~~~~~g~~~~E~~~Sg~gL~~~~~~~~~~---~~-----~-~----~~~~~~~----------- 231 (638)
T PRK14101 178 F--APQDEREDLVLQYARKKYPHVSFERVCAGPGMEIIYRALAAR---DK-----K-R----VAANVDT----------- 231 (638)
T ss_pred C--CCCCHHHHHHHHHHHHhcCcceeeeecchhhHHHHHHHHHhh---cC-----C-C----CcCcCCH-----------
Confidence 1 1222211111 0001123455799999999998888764321 00 0 0 0000111
Q ss_pred CChHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeeccc--
Q 017953 234 PDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHY-- 311 (363)
Q Consensus 234 ~~~~~~~~il~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~-- 311 (363)
.++++. .. .- | .+|..+.++.+++.|.+++-+....+.. .. |-+-|++-.+.
T Consensus 232 ------~~i~~~-a~--~g---d-----~~A~~~~~~~~~~lg~~~~nl~~~~~~p-------~~--vvigGGIs~~~~~ 285 (638)
T PRK14101 232 ------AEIVER-AH--AG---D-----ALALEAVECFCAILGTFAGNLALTLGAL-------GG--IYIGGGVVPKLGE 285 (638)
T ss_pred ------HHHHHH-HH--CC---C-----HHHHHHHHHHHHHHHHHHHHHHHHhCCC-------Cc--EEEeCcHHHHHHH
Confidence 122221 00 01 1 5566788899999999999998887621 22 44678886543
Q ss_pred ----HhHHHHHHHH--HHHHhCCCCcccEEEEEcCCchHHHHHHHH
Q 017953 312 ----TKFSACMQST--VKELLGEEVSETVVIEHSNDGSGIGAALLA 351 (363)
Q Consensus 312 ----p~f~~~~~~~--l~~l~~~~~~~~v~l~~~~DgS~~GAAi~a 351 (363)
+.|++.+++. ++.++. ...|.+...++-..+|||..+
T Consensus 286 ~l~~~~f~~~f~~kg~~~~~~~---~ipv~~i~~~~~~l~Gaa~~~ 328 (638)
T PRK14101 286 LFTRSSFRARFEAKGRFEAYLA---NIPTYLITAEYPAFLGVSAIL 328 (638)
T ss_pred HcChHHHHHHHHhCCChHHHHh---cCCEEEEeCCChhHHHHHHHH
Confidence 3344444331 111221 247999999999999996544
No 20
>PRK00292 glk glucokinase; Provisional
Probab=95.74 E-value=0.98 Score=43.91 Aligned_cols=203 Identities=17% Similarity=0.130 Sum_probs=109.7
Q ss_pred CceEEEEEeccHHhhhccccc------------C--CCceEEEEeeccceeeeEcccCCCCcccCCCCCCCceEEEeecc
Q 017953 86 DMRVAALVNDTIGTLAGGRYH------------N--KDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWG 151 (363)
Q Consensus 86 ~v~v~aivNDTVaTlla~ay~------------~--~~~~iGlIlGTGtNacy~e~~~~i~k~~~~~~~~~~miINtEwG 151 (363)
.+..+.|.||.-+.-++-.+. . .+..+.+-+|||..++.+.+- . .+....-.|+|
T Consensus 91 ~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGiG~giv~~g-----~------~g~~g~agE~G 159 (316)
T PRK00292 91 GLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGLGVAGLVPV-----D------GRWIVLPGEGG 159 (316)
T ss_pred CCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcceEEEEEec-----C------CceEEccCCcc
Confidence 444467889999988886541 1 256788899999999998642 1 12344566666
Q ss_pred CccCCCCCCcccchhhh-ccCCCCCcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhcccc
Q 017953 152 NFRSSHLPLTEYDEALD-TESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHH 230 (363)
Q Consensus 152 ~fg~~~l~~T~~D~~~D-~~s~~pg~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~ 230 (363)
...- .|..+-...+- ..-..-+.-.+|..+||.=|.++.|..... .+ . ++ ..+
T Consensus 160 H~~~--~~~~~~~~~~~~~~c~~~~~gclE~~~Sg~~L~~~~~~~~~~---~~-----~-~~-----~~~---------- 213 (316)
T PRK00292 160 HVDF--APRSEEEAQILQYLRAEFGHVSAERVLSGPGLVNLYRAICKA---DG-----R-EP-----ELL---------- 213 (316)
T ss_pred cccC--CCCChHHHHHHHHHHHhcCCceeEeeecHHhHHHHHHHHHhh---cC-----C-Cc-----ccC----------
Confidence 4421 11111000000 000112345799999999886655432110 00 0 00 000
Q ss_pred CCCCChHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeec-
Q 017953 231 DTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFE- 309 (363)
Q Consensus 231 d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~- 309 (363)
+...+.+...+ -+ | .+|..+.++++++.|.+++.++...+. +. .|-+-|++..
T Consensus 214 ----~~~~i~~~a~~------gd--d-----~~A~~~~~~~~~~lg~~i~~l~~~~~P--------~~-~vvi~Gg~~~~ 267 (316)
T PRK00292 214 ----TPADITERALA------GS--C-----PLCRRTLSLFCVILGRVAGNLALTLGA--------RG-GVYIAGGIVPR 267 (316)
T ss_pred ----CHHHHHHHHHh------CC--C-----hHHHHHHHHHHHHHHHHHHHHHHHhcC--------Cc-eEEEeCchHHh
Confidence 11111111111 00 0 456678999999999999999998864 21 2345666664
Q ss_pred ccHhHHH-HHHHHHHHH--hC-CCCcccEEEEEcCCchHHHHHHHH
Q 017953 310 HYTKFSA-CMQSTVKEL--LG-EEVSETVVIEHSNDGSGIGAALLA 351 (363)
Q Consensus 310 ~~p~f~~-~~~~~l~~l--~~-~~~~~~v~l~~~~DgS~~GAAi~a 351 (363)
..+.+.+ .+.+.+.+- .. .-....|.+...+|...+|||..+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~agl~GAa~~~ 313 (316)
T PRK00292 268 FLEFFKASGFRAAFEDKGRFSAYLADIPVYVITHPQPGLLGAGAYL 313 (316)
T ss_pred HHhhhccHHHHHHHhcCCChhhHHhcCCEEEEcCCChHHHHHHHHH
Confidence 3343333 333333321 11 001245677888899999998765
No 21
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=93.92 E-value=0.64 Score=43.85 Aligned_cols=102 Identities=13% Similarity=0.205 Sum_probs=66.4
Q ss_pred hhhhHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecceecccCCceEEEecccceecCCCCCCcHHHHHHHHHHHhC
Q 017953 5 SHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG 84 (363)
Q Consensus 5 ~~~lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~ 84 (363)
.+++.+.+.+.+.++..... ...|+.+|.|=-- +.+.|.+ .++ ..++-.+.++.+.|++.+ +
T Consensus 36 ~~~~~~~i~~~i~~~~~~~~----------~~~gIgv~~pG~v-d~~~g~i-~~~---~~~~w~~~~l~~~l~~~~---~ 97 (256)
T PRK13311 36 YPQLLQILRDLTEEADTYCG----------VQGSVGIGIPGLP-NADDGTV-FTA---NVPSAMGQPLQADLSRLI---Q 97 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcC----------CCceEEEEecCcE-ECCCCEE-Ecc---CCCcccCCChHHHHHHHH---C
Confidence 45677777777766643221 2347777777422 2234554 444 223334678888887766 4
Q ss_pred CCceEEEEEeccHHhhhccccc----CCCceEEEEeeccceeeeEcc
Q 017953 85 LDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILGTGTNAAYVER 127 (363)
Q Consensus 85 ~~v~v~aivNDTVaTlla~ay~----~~~~~iGlIlGTGtNacy~e~ 127 (363)
+| +.+-||.-+.-++-.+. +.+..+.+.+|||.-++.+.+
T Consensus 98 ~p---V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtGiG~giv~~ 141 (256)
T PRK13311 98 RE---VRIDNDANCFALSEAWDPEFRTYPTVLGLILGTGVGGGLIVN 141 (256)
T ss_pred CC---EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcCeEEEEEEC
Confidence 44 56889998877776553 457889999999999999875
No 22
>PTZ00288 glucokinase 1; Provisional
Probab=93.19 E-value=11 Score=38.44 Aligned_cols=271 Identities=16% Similarity=0.117 Sum_probs=142.4
Q ss_pred ChhhhHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecc--eecccCCceEEEecccceecCCCCCCcHHHHHHHHHH
Q 017953 4 SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFP--VRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAME 81 (363)
Q Consensus 4 ~~~~lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP--~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~ 81 (363)
+..++.+++++-+....+... .. +....+ +|+.| +..-. -.|...+|.--+++++. .-.+
T Consensus 66 ~~~~~~~~~~~~~~~l~~~~~-~~-----~~~~~a-~iAvAGPV~~~~-~~~~~~~~~~~~~lTNl-pw~i--------- 127 (405)
T PTZ00288 66 DIRELLEFFDEVLQKLKKNLS-FI-----QRVAAG-AISVPGPVTGGQ-LAGPFNNLKGIARLTDY-PVEL--------- 127 (405)
T ss_pred cHHHHHHHHHHHHHHHHhcCc-cc-----cCcCeE-EEEEeCceeCCE-eeccccccccccccCCC-Cchh---------
Confidence 456788888886666554321 00 122333 77765 43211 01344888877777763 1111
Q ss_pred HhCCCceEEEEEeccHHhhhcccccC--------------------------------CCceEEEEeeccceeeeEcccC
Q 017953 82 RIGLDMRVAALVNDTIGTLAGGRYHN--------------------------------KDAIAAVILGTGTNAAYVERAH 129 (363)
Q Consensus 82 r~~~~v~v~aivNDTVaTlla~ay~~--------------------------------~~~~iGlIlGTGtNacy~e~~~ 129 (363)
++.+-+.+|||=.|.=.+....+ ....+-+-.|||..+|++.+..
T Consensus 128 ---~~~~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~~~~g~~~~~~~~~Vlg~GTGLG~alli~~~ 204 (405)
T PTZ00288 128 ---FPPGRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGKPAGSVIGRGRCMVLAPGTGLGSSLIHYVG 204 (405)
T ss_pred ---cCCCeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCCCCCcccCCCCCEEEEEeccceeEEEEECCe
Confidence 56667889999666544433221 1234788999999999997432
Q ss_pred CCCcccCCCCCCCceEEEeeccCccCCCCCCc--ccchhhhccCCC-C--------CcceeeeeccccchHHHHHHHHHH
Q 017953 130 AIPKWHGLLPKSGEMVINMEWGNFRSSHLPLT--EYDEALDTESLN-P--------GEQIFEKIISGMYLGEIVRRVLCR 198 (363)
Q Consensus 130 ~i~k~~~~~~~~~~miINtEwG~fg~~~l~~T--~~D~~~D~~s~~-p--------g~q~~EkmvsG~YLGEl~R~il~~ 198 (363)
. -.+...+=+|.|...-+..|.+ .+...+=+.-.. - ..-.+|.++||+=|..+.|... +
T Consensus 205 l---------~~G~~~~agEgGHv~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~~~~~vs~E~v~SG~GL~~ly~~l~-~ 274 (405)
T PTZ00288 205 V---------SDQYIVIPLECGHLSISWPANEDSDYVQALAGYLASKALSKGIDSTVYPIYEDIVSGRGLEFNYAYEK-R 274 (405)
T ss_pred e---------cCCcccccccccceeeccCCCCccchhHHHHHHHHhhhccccccccCceeEeEEecHHHHHHHHHHHh-c
Confidence 1 1234567777776532111222 211211000000 0 1237899999999988777531 1
Q ss_pred HHhhcCCCCCCCCCCCCCCCccCchhhhccccCCCCChHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017953 199 MAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAG 278 (363)
Q Consensus 199 ~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~ 278 (363)
. ..++ +-.. + ..++.+... ...+ .+|..+.++.+++.+.+
T Consensus 275 ---~------~~~~----~~~~--------------~---~a~ia~~A~--~~gD--------~~A~~al~~f~~~LG~~ 314 (405)
T PTZ00288 275 ---G------NKPS----APLK--------------E---AAEVAKLAK--YGSD--------VAAVKAMKRHYKYLMRL 314 (405)
T ss_pred ---c------CCCc----cCcC--------------C---HHHHHHHHH--hCCC--------HHHHHHHHHHHHHHHHH
Confidence 0 0010 0000 0 112221100 0000 34667888899999999
Q ss_pred HHHHHHHhCCCCcCCCCCceEEEEEeceeecccHh---------HHHHHHH--HH--HHHhCCCCcccEEE-EEcCCchH
Q 017953 279 IVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTK---------FSACMQS--TV--KELLGEEVSETVVI-EHSNDGSG 344 (363)
Q Consensus 279 iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~---------f~~~~~~--~l--~~l~~~~~~~~v~l-~~~~DgS~ 344 (363)
+.-+...+.. .. |-+-|+...+... |.+.... .. .+++.. ..|.+ +..++-..
T Consensus 315 ~~nlal~l~P--------~~--VvIgGGi~~~~~~~l~~~~~~~f~~~f~~~~k~~r~~~l~~---ipv~~qv~~~~~gL 381 (405)
T PTZ00288 315 AAEISMQFLP--------LT--VVLMGDNIVYNSFFFDNPENVKQLQARITEHKMERLKFLSR---TTFLRQKKSVNLNL 381 (405)
T ss_pred HHHHHHHHCC--------CE--EEEECccHHhhHHHHhccchHHHHHHHHhcCccChHHHHhc---CceEEEEeCCCccH
Confidence 9888888764 22 4445644443322 2222211 10 233322 35655 77899999
Q ss_pred HHHHHHHHHhcchh
Q 017953 345 IGAALLAASHSQYL 358 (363)
Q Consensus 345 ~GAAi~aa~~~~~~ 358 (363)
+|||..|+..+..+
T Consensus 382 ~Gaa~~a~~~~~~~ 395 (405)
T PTZ00288 382 LGCLQFGSQLSHLK 395 (405)
T ss_pred HHHHHHHHHhhccC
Confidence 99998886554433
No 23
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=92.60 E-value=7.7 Score=37.74 Aligned_cols=258 Identities=17% Similarity=0.174 Sum_probs=131.2
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecceecccCCceEEEecccceecCCCCCCcHHHHHHHHHHHhCCCc
Q 017953 8 LFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDM 87 (363)
Q Consensus 8 lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~~~v 87 (363)
.|+-+.+.|.+|+.+..... ....-..|+..+-|++. +.+ ..+ .... ..++. .|++. +.+
T Consensus 32 ~~~~l~~~i~~~l~~~~~~~---~~~~~~~~Igi~Gpv~~-----~~v-~~~-nl~w----~~~~~-~l~~~-----~g~ 91 (316)
T TIGR00749 32 DFPSLEAVVRVYLEEHKVEL---KDPIAKGCFAIACPITG-----DWV-AMT-NHTW----AFSIA-ELKQN-----LGF 91 (316)
T ss_pred CCCCHHHHHHHHHHhccccc---CCCcCeEEEEEeCcccC-----CEE-Eec-CCCC----eeCHH-HHHHh-----cCC
Confidence 46667788888887643211 01122367777788733 222 222 1111 02332 33332 344
Q ss_pred eEEEEEeccHHhhhcc--------ccc----CCCceEEEEe--eccceeeeEcccCCCCcccCCCCCCCc-eEEEeeccC
Q 017953 88 RVAALVNDTIGTLAGG--------RYH----NKDAIAAVIL--GTGTNAAYVERAHAIPKWHGLLPKSGE-MVINMEWGN 152 (363)
Q Consensus 88 ~v~aivNDTVaTlla~--------ay~----~~~~~iGlIl--GTGtNacy~e~~~~i~k~~~~~~~~~~-miINtEwG~ 152 (363)
..+.|.||--+.-++- .+. ..+..+.+++ |||...+.+.+.. +++ ...-.|+|.
T Consensus 92 ~~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~~~~v~lGtGtG~G~~~vi~~~-----------~g~l~~~agE~GH 160 (316)
T TIGR00749 92 SHLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEGKPIAILGAGTGLGVAHLIHQV-----------DGRWVVLPGEGGH 160 (316)
T ss_pred CeEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCCCcEEEEecCCCceeeEEEEcC-----------CCCEEECCCCccc
Confidence 4578999999888885 332 2344588999 6666666454210 112 234456654
Q ss_pred ccCCCCCCcccchh----hhccCCCCCcceeeeeccccchHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhcc
Q 017953 153 FRSSHLPLTEYDEA----LDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAM 228 (363)
Q Consensus 153 fg~~~l~~T~~D~~----~D~~s~~pg~q~~EkmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i 228 (363)
.. .-|.++-+.. +.... +.-.+|..+||.-|..+.|...... +.. .... . ....+
T Consensus 161 ~~--~~~~~~~~~~~~~~l~~~~---~~g~~E~~~Sg~gl~~~~~~~~~~~---~~~---~~~~-~-~~~~~-------- 219 (316)
T TIGR00749 161 VD--FAPNSELEAIILEYLRAKI---GHVSAERVLSGPGLVNIYEALVKAD---PER---QFNK-L-PQENL-------- 219 (316)
T ss_pred cc--CCCCCHHHHHHHHHHHHhc---CCceeeeeecHHHHHHHHHHHHhhc---Ccc---cccc-c-ccccC--------
Confidence 41 1122211111 11222 3457999999999988888653211 000 0000 0 00001
Q ss_pred ccCCCCChHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceee
Q 017953 229 HHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLF 308 (363)
Q Consensus 229 ~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~ 308 (363)
+ .+.+++. ..- -+ | .+|..+.++.+++.|.+++-+....+.. . .|-+-|++.
T Consensus 220 ------~---~~~I~~a-a~~--Gd--d-----~~A~~~~~~~~~~lg~~i~nl~~~ldpe-------g--gv~v~GG~~ 271 (316)
T TIGR00749 220 ------K---PKDISER-ALA--GS--C-----TDCRRALSLFCVIYGRFAGNLALNLGTR-------G--GVYIAGGIV 271 (316)
T ss_pred ------C---HHHHHHH-HHc--CC--C-----HHHHHHHHHHHHHHHHHHHHHHHHhCCC-------C--cEEEECcHH
Confidence 1 1222221 100 00 0 4677788999999999999998888642 1 233566665
Q ss_pred ccc-H-----hHHHHHHHH--HHHHhCCCCcccEEEEEcCCchHHHHH
Q 017953 309 EHY-T-----KFSACMQST--VKELLGEEVSETVVIEHSNDGSGIGAA 348 (363)
Q Consensus 309 ~~~-p-----~f~~~~~~~--l~~l~~~~~~~~v~l~~~~DgS~~GAA 348 (363)
.+. + .|++.+.+. ++.++. ...|.+...++-...|||
T Consensus 272 ~~~~~~~~~~~f~~~~~~~~~~~~~~~---~~pv~~i~~~~~~l~G~~ 316 (316)
T TIGR00749 272 PRFIEFFKASGFRAAFEDKGRMKEYVH---DIPVYVVLHDNPGLLGAG 316 (316)
T ss_pred HhHHhhhCchHHHHHHhccCChhHHHh---hCCEEEEcCCCccccCCC
Confidence 322 2 233333221 111221 247999999999999885
No 24
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=91.00 E-value=2 Score=37.63 Aligned_cols=100 Identities=23% Similarity=0.350 Sum_probs=71.3
Q ss_pred ChhhhHHHHHHHHHHHHHhhCCCCCCCCCccccceeeeecc--eecccCCceEEEecccceecCCCCCCcHHHHHHHHHH
Q 017953 4 SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFP--VRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAME 81 (363)
Q Consensus 4 ~~~~lFd~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP--~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~ 81 (363)
+.+++.+.+.+.+.+++.+... . |+.+|+| ++. ++|.++.... .+..+.++.+.|++.+
T Consensus 31 ~~~~~~~~l~~~i~~~~~~~~~--------~---gIgi~~pG~v~~---~~g~i~~~~~----~~~~~~~l~~~l~~~~- 91 (179)
T PF00480_consen 31 SPEELLDALAELIERLLADYGR--------S---GIGISVPGIVDS---EKGRIISSPN----PGWENIPLKEELEERF- 91 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTC--------E---EEEEEESSEEET---TTTEEEECSS----GTGTTCEHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHhhccc--------c---cEEEeccccCcC---CCCeEEecCC----CCcccCCHHHHhhccc-
Confidence 5688999999999999988641 2 5555555 554 2355555444 3445688999888776
Q ss_pred HhCCCceEEEEEeccHHhhhccccc----CCCceEEEEeeccceeeeEcc
Q 017953 82 RIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILGTGTNAAYVER 127 (363)
Q Consensus 82 r~~~~v~v~aivNDTVaTlla~ay~----~~~~~iGlIlGTGtNacy~e~ 127 (363)
++ .+.+.||..+..++-.+. +.+..+-+-+|||.-++++.+
T Consensus 92 --~~---pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~GiG~~ii~~ 136 (179)
T PF00480_consen 92 --GV---PVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTGIGAGIIIN 136 (179)
T ss_dssp --TS---EEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSSEEEEEEET
T ss_pred --ce---EEEEecCCCcceeehhhcCccCCcceEEEEEeecCCCcceecc
Confidence 33 467889999887766552 346788899999999999863
No 25
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=90.39 E-value=2.6 Score=37.59 Aligned_cols=47 Identities=30% Similarity=0.388 Sum_probs=38.0
Q ss_pred EEEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 017953 300 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 355 (363)
Q Consensus 300 ~V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~ 355 (363)
.|-+.|+.. +.|.+.+++-..+ + ..|.....++++.+|||++|+++.
T Consensus 152 ~i~~~GG~~-~n~~~~q~~Advl----~----~~V~~~~~~e~~a~GaA~~A~~a~ 198 (198)
T PF02782_consen 152 RIRVSGGGA-KNPLWMQILADVL----G----RPVVRPEVEEASALGAALLAAVAV 198 (198)
T ss_dssp EEEEESGGG-GSHHHHHHHHHHH----T----SEEEEESSSTHHHHHHHHHHHHHT
T ss_pred eeEeccccc-cChHHHHHHHHHh----C----CceEeCCCCchHHHHHHHHHHhhC
Confidence 466788888 8999988876644 3 478888789999999999999863
No 26
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=80.46 E-value=46 Score=32.71 Aligned_cols=150 Identities=23% Similarity=0.256 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCccccceeeeecc--eecccCCceEEEecccceecCCCCCCcHHHHHHHHHHHhCCCc
Q 017953 10 DYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFP--VRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDM 87 (363)
Q Consensus 10 d~iA~~i~~fl~~~~~~~~~~~~~~l~lGftFSFP--~~qt~~~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~~~v 87 (363)
+-+.+.|.+|+.+... +..-|-.-||+.+ +.. ++.++.+|. +.++. +.|++ .+.+
T Consensus 36 ~s~~~~l~~~l~~~~~------~~~~p~~~~iavAGPV~~---~~~~lTN~~--W~i~~-----------~~l~~-~lg~ 92 (316)
T PF02685_consen 36 PSFEDALADYLAELDA------GGPEPDSACIAVAGPVRD---GKVRLTNLP--WTIDA-----------DELAQ-RLGI 92 (316)
T ss_dssp CHHHHHHHHHHHHTCH------HHTCEEEEEEEESS-EET---TCEE-SSSC--CEEEH-----------HHCHC-CCT-
T ss_pred CCHHHHHHHHHHhccc------CCCccceEEEEEecCccC---CEEEecCCC--ccccH-----------HHHHH-HhCC
Confidence 3345566667764311 0123445666665 554 566666663 44442 33332 2344
Q ss_pred eEEEEEeccHHhhhccccc-------------CCCceEEEE-eeccceeeeEcccCCCCcccCCCCCCCceEEEeeccCc
Q 017953 88 RVAALVNDTIGTLAGGRYH-------------NKDAIAAVI-LGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNF 153 (363)
Q Consensus 88 ~v~aivNDTVaTlla~ay~-------------~~~~~iGlI-lGTGtNacy~e~~~~i~k~~~~~~~~~~miINtEwG~f 153 (363)
+-+.+|||=.|.-.+.... ++...+.+| .|||.+.|++.+. ..+..++-||.|.-
T Consensus 93 ~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a~l~~~-----------~~~~~v~~sEgGH~ 161 (316)
T PF02685_consen 93 PRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVALLVPD-----------GDGYYVLPSEGGHV 161 (316)
T ss_dssp TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEEEEEEE-----------TTEEEEEEE-GGGS
T ss_pred ceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEEEEEec-----------CCceEeCCCccccc
Confidence 4678999966654443331 233333333 6999999999863 23456999999987
Q ss_pred cCCCCCCcccchhhhc-cCCCCCcceeeeeccccchHHHHHHH
Q 017953 154 RSSHLPLTEYDEALDT-ESLNPGEQIFEKIISGMYLGEIVRRV 195 (363)
Q Consensus 154 g~~~l~~T~~D~~~D~-~s~~pg~q~~EkmvsG~YLGEl~R~i 195 (363)
+ .-|+++.+..+=+ -...-+.=..|.++||+=|..|.+-.
T Consensus 162 ~--fap~~~~e~~l~~~l~~~~~~vs~E~vlSG~GL~~ly~~l 202 (316)
T PF02685_consen 162 D--FAPRTDEEAELLRFLRRRYGRVSVERVLSGRGLENLYRFL 202 (316)
T ss_dssp B-----SSHHHHHHHHHHHHHCTS-BHHHCSSHHHHHHHHHHH
T ss_pred c--CCCCCHHHHHHHHHHHHhcCCceeEeecchhhHHHHHHHH
Confidence 4 3467765544421 01111556889999998887766653
No 27
>PRK00976 hypothetical protein; Provisional
Probab=77.13 E-value=25 Score=34.83 Aligned_cols=72 Identities=24% Similarity=0.265 Sum_probs=50.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCc
Q 017953 263 LCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDG 342 (363)
Q Consensus 263 i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~Dg 342 (363)
.|..+.++.+..+|.+|+.++..+.. + .|.+-|++-+. +.+ .+.+.+++.+.+ . ...+-++.
T Consensus 239 ~A~~aid~~~~~LA~~IAnLi~llDP--------e--~IVLGGGVS~~-~e~--~L~~~I~e~l~~----~-~a~LG~dA 300 (326)
T PRK00976 239 KAKLAIDTLALFVAMEIASLLLLNPE--------D--NVVLAGSVGEM-DEP--DVSERIKELLDK----K-VLVLGKES 300 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--------C--EEEEcCccccC-chh--HHHHHHHHHhcc----c-ccccCCch
Confidence 46778889999999999999888753 1 47778998744 322 244444444432 1 45556799
Q ss_pred hHHHHHHHHH
Q 017953 343 SGIGAALLAA 352 (363)
Q Consensus 343 S~~GAAi~aa 352 (363)
..+|||.+|-
T Consensus 301 GaiGAA~iA~ 310 (326)
T PRK00976 301 AAIGLALIAR 310 (326)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 28
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=68.65 E-value=1.6e+02 Score=31.14 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 017953 276 AAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 355 (363)
Q Consensus 276 aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~ 355 (363)
|=+.-.|+.-+.+.. .+-=+|-+-|+. .|+|...+.+-..+ ++.|.+..+++-..+|+|+.+|+|+
T Consensus 415 A~GtR~Iie~~~~~g-----~~Id~l~~sGG~-~KN~llmql~aDvt--------g~~v~i~~s~~a~llGsAm~~avAa 480 (544)
T COG1069 415 AFGTRAIIETFEDQG-----IAIDTLFASGGI-RKNPLLMQLYADVT--------GRPVVIPASDQAVLLGAAMFAAVAA 480 (544)
T ss_pred HHhHHHHHHHHHHcC-----CeeeEEEecCCc-ccCHHHHHHHHHhc--------CCeEEeecccchhhhHHHHHHHHHh
Confidence 445556666665421 122267789999 89999888776644 3689999999999999999999887
No 29
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=68.06 E-value=1.3e+02 Score=29.61 Aligned_cols=186 Identities=20% Similarity=0.166 Sum_probs=103.0
Q ss_pred HhCCCce-EEEEEeccHHhhhcccccCCCceEEEEeeccceeeeEcccCCCCcccCCCCCCCceEEEeeccCccCCCCCC
Q 017953 82 RIGLDMR-VAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPL 160 (363)
Q Consensus 82 r~~~~v~-v~aivNDTVaTlla~ay~~~~~~iGlIlGTGtNacy~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~l~~ 160 (363)
.+.+++- -+-|.||....|+++-..++- +=+|+|||+ +|+-. ..++...-=-||.+=
T Consensus 91 ~~~l~~a~~v~v~~Dg~iAl~ga~~~~~G--ii~i~GTGS--i~~~~------------~gg~~~r~GG~Gf~I------ 148 (301)
T COG2971 91 ERLLPFAGKVDVENDGLIALRGALGDDDG--IIVIAGTGS--IGYGR------------KGGRRERVGGWGFPI------ 148 (301)
T ss_pred HHhcCccceEEEecChHHHHhhccCCCCC--EEEEecCCe--EEEEE------------eCCeeEEecCcCccc------
Confidence 3444544 677899999999988665433 346888984 44432 123444444566551
Q ss_pred cccchhhhccCCCCCcceeeeeccccchHH-HHHHHHHHHHhhcCCCCCCCCCCCCCCCccCchhhhccccCCCCChHHH
Q 017953 161 TEYDEALDTESLNPGEQIFEKIISGMYLGE-IVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVV 239 (363)
Q Consensus 161 T~~D~~~D~~s~~pg~q~~EkmvsG~YLGE-l~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~ 239 (363)
. |+ -||.|||. +++.+|+. |++..+. -.+..+.|..+.. |.+.+
T Consensus 149 g------De-------------gSga~ig~~~L~~~lra-------~DG~~~~-----t~L~d~v~~~f~~----d~edl 193 (301)
T COG2971 149 G------DE-------------GSGAWIGREALQEALRA-------FDGRREA-----TPLTDAVMAEFNL----DPEDL 193 (301)
T ss_pred c------cc-------------chHHHHHHHHHHHHHHH-------hcCCccC-----ChHHHHHHHHhCC----CHHHH
Confidence 1 11 37888884 33444432 3443331 1244555555542 34444
Q ss_pred HHHHhhhhCCCCCCHHHHHHH-----------HHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceee
Q 017953 240 GKKLKDILEISNTSLKMRKLV-----------VELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLF 308 (363)
Q Consensus 240 ~~il~~~~~~~~~~~~d~~~v-----------r~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~ 308 (363)
....... .++.++...+ -.++..|.+.||..+++.+-++..+. ....+.+-|+++
T Consensus 194 v~~~y~a----~~~~~~ia~lap~V~~~A~~GD~~A~~Il~~aa~~i~~~~~~l~~~~----------g~~~l~l~GG~~ 259 (301)
T COG2971 194 VAFIYKA----GPGDKKIAALAPAVFEAARKGDPVAIRILKEAAAYIATLLEALSIFN----------GSEKLSLLGGLA 259 (301)
T ss_pred HHHHHhc----CCchHHHHHhhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhccc----------CCceEEEecccc
Confidence 4444331 1223222211 12455677778766666655553222 234577899999
Q ss_pred cccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHH
Q 017953 309 EHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLA 351 (363)
Q Consensus 309 ~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~a 351 (363)
+.+|.|...+++.+ ..+ . .+....||.+.|
T Consensus 260 ~~~~~~~~~~~~~l---~~~-----~-----~~D~~~GA~~~A 289 (301)
T COG2971 260 PSYPYYLSLFRRAL---LVP-----P-----IGDALSGAVLLA 289 (301)
T ss_pred ccchhhHHHHHHHh---cCC-----c-----cccHHHHHHHHH
Confidence 99999999998854 222 1 455577777666
No 30
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=63.11 E-value=25 Score=37.03 Aligned_cols=83 Identities=24% Similarity=0.223 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHHHHHHHhCCCCc
Q 017953 252 TSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVS 331 (363)
Q Consensus 252 ~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~ 331 (363)
++.+++ .|.+|++|.-+...++.+. .++. ..+--++.++|++- ++|.|.+..... +|
T Consensus 383 ts~~hi--a~A~leai~fqtr~Il~am--------~~~~----~~~i~~L~~~GG~s-~N~ll~Q~~ADi----~g---- 439 (516)
T KOG2517|consen 383 TSKEHL--ARAALEAIAFQTREILEAM--------ERDG----GHPISTLRVCGGLS-KNPLLMQLQADI----LG---- 439 (516)
T ss_pred CCHHHH--HHHHHHHHHHHHHHHHHHH--------HHhc----CCCcceeeeccccc-cCHHHHHHHHHH----hC----
Confidence 344443 3477777777666554443 2221 01223588899986 788888777653 33
Q ss_pred ccEEEEEcCCchHHHHHHHHHHhcch
Q 017953 332 ETVVIEHSNDGSGIGAALLAASHSQY 357 (363)
Q Consensus 332 ~~v~l~~~~DgS~~GAAi~aa~~~~~ 357 (363)
..|.+...-|..++|||++|+++++.
T Consensus 440 ~pv~~p~~~e~~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 440 LPVVRPQDVEAVALGAAMLAGAASGK 465 (516)
T ss_pred CccccccchhHHHHHHHHHHHhhcCC
Confidence 46776666777999999999999876
No 31
>PRK04123 ribulokinase; Provisional
Probab=61.38 E-value=38 Score=35.54 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=36.4
Q ss_pred EEEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 017953 300 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 355 (363)
Q Consensus 300 ~V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~ 355 (363)
.|-+.|+..-+.+.+.+.+-+.+ + ..|......+++.+|||++|+++.
T Consensus 441 ~i~~~GGg~s~s~~w~Qi~ADv~----g----~pV~~~~~~e~~alGaA~lA~~~~ 488 (548)
T PRK04123 441 EVIAAGGIARKNPVLMQIYADVL----N----RPIQVVASDQCPALGAAIFAAVAA 488 (548)
T ss_pred eEEEeCCCcccCHHHHHHHHHhc----C----CceEecCccccchHHHHHHHHHHh
Confidence 46678888668888888776533 3 467666678899999999998764
No 32
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=58.47 E-value=56 Score=33.91 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=34.5
Q ss_pred EEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 017953 301 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 355 (363)
Q Consensus 301 V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~ 355 (363)
|-+.|+.- +.+.+++.+...+ + ..|......+++.+|||++|+++.
T Consensus 405 i~~~GGga-~s~~w~Qi~Adv~----g----~pv~~~~~~e~~a~GaA~la~~~~ 450 (505)
T TIGR01314 405 IQATGGFA-SSEVWRQMMSDIF----E----QEIVVPESYESSCLGACILGLKAL 450 (505)
T ss_pred EEEecCcc-cCHHHHHHHHHHc----C----CeeEecCCCCcchHHHHHHHHHhc
Confidence 44566644 7788888777644 3 468877788899999999998765
No 33
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=55.72 E-value=69 Score=33.41 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=34.1
Q ss_pred EEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 017953 301 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 355 (363)
Q Consensus 301 V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~ 355 (363)
|-+.|+. -+.+.+.+.+-+. ++ ..|+.....+++.+|||++|+++.
T Consensus 413 i~~~GGg-a~s~~w~Qi~ADv----lg----~pV~~~~~~e~~alGaA~lA~~~~ 458 (520)
T PRK10939 413 LVFAGGG-SKGKLWSQILADV----TG----LPVKVPVVKEATALGCAIAAGVGA 458 (520)
T ss_pred EEEeCCc-ccCHHHHHHHHHh----cC----CeeEEecccCchHHHHHHHHHHHh
Confidence 4456663 5788887777653 33 468777788999999999998774
No 34
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=54.87 E-value=71 Score=33.50 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=36.6
Q ss_pred EEEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcc
Q 017953 300 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 356 (363)
Q Consensus 300 ~V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~~ 356 (363)
.|-+.|+..-+.+.+.+.+-.. ++ ..|+.....+++.+|||++|+++.-
T Consensus 438 ~i~~~GGg~a~s~~w~Qi~Adv----~g----~pV~~~~~~e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 438 ELMAAGGIARKNPVIMQIYADV----TN----RPLQIVASDQAPALGAAIFAAVAAG 486 (536)
T ss_pred eEEEeCCccccCHHHHHHHHHh----hC----CeeEeccCCcchhHHHHHHHHHHcC
Confidence 4667888855788888766553 33 4687777788999999999987653
No 35
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=54.55 E-value=78 Score=32.32 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=35.7
Q ss_pred EEEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcc
Q 017953 300 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 356 (363)
Q Consensus 300 ~V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~~ 356 (363)
.|-+.|+.- +++.+.+.+.+.+ + ..|.....++++.+|||++|+++.-
T Consensus 393 ~i~~~GG~s-~s~~~~Q~~Adv~----g----~pv~~~~~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 393 SIRLIGGGA-KSPAWRQMLADIF----G----TPVDVPEGEEGPALGAAILAAWALG 440 (481)
T ss_pred eEEEecccc-CCHHHHHHHHHHh----C----CceeecCCCcchHHHHHHHHHHhcC
Confidence 355677764 7888877776643 3 3677767889999999999988764
No 36
>PRK13317 pantothenate kinase; Provisional
Probab=53.05 E-value=1e+02 Score=29.70 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHHHHH
Q 017953 259 LVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVK 323 (363)
Q Consensus 259 ~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~~l~ 323 (363)
+.+.|..+|.+|-+.|+. .+.+... .+ .|.+.|+.+.++|.+++.+.++++
T Consensus 198 Iaasl~~~v~~~I~~lA~-----~~ar~~~--------~~-~Ivf~G~gla~n~~l~~~l~~~l~ 248 (277)
T PRK13317 198 ILAGVIGLVGEVITTLSI-----QAAREKN--------IE-NIVYIGSTLTNNPLLQEIIESYTK 248 (277)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHhcC--------CC-eEEEECcccccCHHHHHHHHHHHh
Confidence 445666677666655432 2223222 12 588999988899999998887654
No 37
>PRK00047 glpK glycerol kinase; Provisional
Probab=49.05 E-value=91 Score=32.31 Aligned_cols=46 Identities=22% Similarity=0.246 Sum_probs=34.4
Q ss_pred EEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 017953 301 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 355 (363)
Q Consensus 301 V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~ 355 (363)
|-+.|+ .-+.|.+.+.+-+.+ + ..|.....++++.+|||++|+++.
T Consensus 407 i~~~GG-ga~s~~w~Qi~ADvl----g----~pV~~~~~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 407 LRVDGG-AVANNFLMQFQADIL----G----VPVERPVVAETTALGAAYLAGLAV 452 (498)
T ss_pred EEEecC-cccCHHHHHHHHHhh----C----CeeEecCcccchHHHHHHHHhhhc
Confidence 445666 358888888777644 3 467776778899999999998875
No 38
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=48.67 E-value=99 Score=31.74 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=33.5
Q ss_pred EEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 017953 301 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 355 (363)
Q Consensus 301 V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~ 355 (363)
|-+.|+- -++|.+.+.+... ++ ..|......+++.+|||++|+++.
T Consensus 397 i~~~GGg-a~s~~w~Qi~Adv----~g----~pV~~~~~~e~~~lGaA~~a~~a~ 442 (465)
T TIGR02628 397 LLLVGGG-SKNTLWNQIRANM----LD----IPVKVVDDAETTVAGAAMFGFYGV 442 (465)
T ss_pred EEEecCc-cCCHHHHHHhhhh----cC----CeeEeccCCcchHHHHHHHHHHhc
Confidence 4455664 3788887777653 33 467777778899999999999875
No 39
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=48.28 E-value=23 Score=23.67 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=25.0
Q ss_pred CCCCCcceeeeeccccchHHHHHHHHHHH
Q 017953 171 SLNPGEQIFEKIISGMYLGEIVRRVLCRM 199 (363)
Q Consensus 171 s~~pg~q~~EkmvsG~YLGEl~R~il~~~ 199 (363)
.+||.+|+-|-=-...|+|-|+=.++.-+
T Consensus 4 ~~NpN~q~VELNRTSLy~GlLlifvl~vL 32 (39)
T PRK00753 4 NPNPNKQPVELNRTSLYLGLLLVFVLGIL 32 (39)
T ss_pred CCCCCCCCceechhhHHHHHHHHHHHHHH
Confidence 57999999999999999999887776544
No 40
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=48.09 E-value=1e+02 Score=31.98 Aligned_cols=46 Identities=28% Similarity=0.462 Sum_probs=33.0
Q ss_pred EEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 017953 301 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 355 (363)
Q Consensus 301 V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~ 355 (363)
|-+.|..- +++.+.+.+.+. ++ ..|.....++++.+|||++||++.
T Consensus 410 i~~~GG~a-~s~~w~Qi~Adv----~g----~pV~~~~~~e~~alGaAl~aa~a~ 455 (504)
T PTZ00294 410 LRVDGGLT-KNKLLMQFQADI----LG----KDIVVPEMAETTALGAALLAGLAV 455 (504)
T ss_pred EEEecccc-cCHHHHHHHHHH----hC----CceEecCcccchHHHHHHHHHhhc
Confidence 44566555 677777666653 33 467777778899999999999775
No 41
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=47.67 E-value=19 Score=23.89 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=17.9
Q ss_pred CCCCCcceeeeeccccchHHHHHHHHHHH
Q 017953 171 SLNPGEQIFEKIISGMYLGEIVRRVLCRM 199 (363)
Q Consensus 171 s~~pg~q~~EkmvsG~YLGEl~R~il~~~ 199 (363)
++||.+|+-|-=-+..|+|-|+=.++.-+
T Consensus 2 ~~Npn~q~VELNRTSLY~GLllifvl~vL 30 (37)
T PF02419_consen 2 RPNPNKQPVELNRTSLYWGLLLIFVLAVL 30 (37)
T ss_dssp ---TT---BE--CCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccchhHHhHHHHHHHHHHHHHH
Confidence 57999999999999999999887776544
No 42
>PRK15027 xylulokinase; Provisional
Probab=46.82 E-value=1.2e+02 Score=31.37 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=32.0
Q ss_pred EEEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEE-EcCCchHHHHHHHHHHhc
Q 017953 300 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIE-HSNDGSGIGAALLAASHS 355 (363)
Q Consensus 300 ~V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~-~~~DgS~~GAAi~aa~~~ 355 (363)
.|-+.|+. -+.+.+.+.+.+.+ + ..|... ..++++.+|||++|+++.
T Consensus 389 ~i~~~GGg-a~s~~w~Qi~Adv~----g----~pv~~~~~~~~~~a~GaA~lA~~~~ 436 (484)
T PRK15027 389 SVTLIGGG-ARSEYWRQMLADIS----G----QQLDYRTGGDVGPALGAARLAQIAA 436 (484)
T ss_pred EEEEeCcc-cCCHHHHHHHHHHh----C----CeEEeecCCCcchHHHHHHHHHHhc
Confidence 35566664 47888877776644 3 456433 345588999999999875
No 43
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=44.80 E-value=1.2e+02 Score=31.30 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=34.6
Q ss_pred EEEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 017953 300 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 355 (363)
Q Consensus 300 ~V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~ 355 (363)
.|-+.|+.- +++.+.+.+.+.+ + ..|.....++++.+|||++|+++.
T Consensus 402 ~i~~~GGga-~s~~w~Qi~ADv~----g----~pv~~~~~~e~~alGaA~~a~~~~ 448 (493)
T TIGR01311 402 KLRVDGGMT-NNNLLMQFQADIL----G----VPVVRPKVTETTALGAAYAAGLAV 448 (493)
T ss_pred eEEEecccc-cCHHHHHHHHHhc----C----CeeEecCCCcchHHHHHHHHHhhc
Confidence 355566643 8888888777643 3 467766778899999999998775
No 44
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=44.01 E-value=14 Score=34.41 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=16.4
Q ss_pred HHhhhcccccCCCceEEE
Q 017953 97 IGTLAGGRYHNKDAIAAV 114 (363)
Q Consensus 97 VaTlla~ay~~~~~~iGl 114 (363)
+|.|.|-+-.||+++||-
T Consensus 73 iA~LsA~RSkDpntqVGa 90 (230)
T KOG3127|consen 73 IAFLSAKRSKDPNTQVGA 90 (230)
T ss_pred HHHHHHHhccCcccceee
Confidence 899999999999999994
No 45
>COG4071 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.48 E-value=23 Score=33.00 Aligned_cols=52 Identities=35% Similarity=0.407 Sum_probs=34.7
Q ss_pred CcHHHHHHHHHHHhCCCceEEEEEeccHHhhh--ccccc-CCCceEEEEeecccee
Q 017953 70 EDVVGELTKAMERIGLDMRVAALVNDTIGTLA--GGRYH-NKDAIAAVILGTGTNA 122 (363)
Q Consensus 70 ~dv~~lL~~al~r~~~~v~v~aivNDTVaTll--a~ay~-~~~~~iGlIlGTGtNa 122 (363)
+-+...|...++|+ +-++|+.|+-||=+|+= ...|+ -|-..=|+|-|||.-.
T Consensus 143 ~~vA~el~~Ei~rr-~GvDV~v~v~DTDaTY~iLg~yFT~lp~a~pgI~sgtGv~G 197 (278)
T COG4071 143 KKVAEELYKEIKRR-LGVDVVVMVADTDATYRILGFYFTALPYAIPGIISGTGVFG 197 (278)
T ss_pred HHHHHHHHHHHHHH-hCCceEEEEecCchHHHHHHHHHhhccccCCCeecccchHH
Confidence 34677788888765 33667788889988863 33333 2555568888888644
No 46
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=43.06 E-value=1.3e+02 Score=31.61 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=35.3
Q ss_pred EEEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 017953 300 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 355 (363)
Q Consensus 300 ~V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~ 355 (363)
.|-+.|+. -+.+.+.+.+-..+ + ..|+.....+++.+|||++|+++.
T Consensus 446 ~i~~~GGg-a~s~~w~Qi~ADvl----g----~pV~~~~~~e~~alGaA~lA~~~~ 492 (541)
T TIGR01315 446 SIFMSGGQ-CQNPLLMQLIADAC----D----MPVLIPYVNEAVLHGAAMLGAKAA 492 (541)
T ss_pred EEEEecCc-ccCHHHHHHHHHHH----C----CeeEecChhHHHHHHHHHHHHHhc
Confidence 46678875 47888877776543 3 467777788899999999998765
No 47
>CHL00038 psbL photosystem II protein L
Probab=41.77 E-value=30 Score=23.07 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=25.0
Q ss_pred CCCCCcceeeeeccccchHHHHHHHHHHH
Q 017953 171 SLNPGEQIFEKIISGMYLGEIVRRVLCRM 199 (363)
Q Consensus 171 s~~pg~q~~EkmvsG~YLGEl~R~il~~~ 199 (363)
.+||.+|+-|-=-...|+|-|+=.++.-+
T Consensus 3 ~~NPN~q~VELNRTSLy~GLLlifvl~vl 31 (38)
T CHL00038 3 QSNPNKQNVELNRTSLYWGLLLIFVLAVL 31 (38)
T ss_pred CCCCCCCccchhhhhHHHHHHHHHHHHHH
Confidence 57999999999999999999887776544
No 48
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=41.51 E-value=86 Score=30.66 Aligned_cols=112 Identities=15% Similarity=0.209 Sum_probs=58.5
Q ss_pred CCCcceeeeecc--ccchHHHHHHHHHHHHhhcCC-CCCC-CCCCCCCCCccCchhhhccccCCCCChHHHHHHHhhhhC
Q 017953 173 NPGEQIFEKIIS--GMYLGEIVRRVLCRMAEEANF-FGDT-VPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILE 248 (363)
Q Consensus 173 ~pg~q~~Ekmvs--G~YLGEl~R~il~~~~~~~~l-f~~~-~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~ 248 (363)
-+.++.=+|.-+ |+||-+..|..=+++-+-+.+ +... -|..+.. +|.+.. .+.+...+.+ |
T Consensus 148 v~dF~MNdkCAAGTGrFLE~~A~~Lgi~leel~~~a~~~~~~p~~Iss--------~CtVFA-----eSevi~l~~~--G 212 (293)
T TIGR03192 148 VTNFLMNDKCAAGTGRGMEVISDLMQIPIADLGPRSFDVETEPEAVSS--------ICVVFA-----KSEALGLLKA--G 212 (293)
T ss_pred EeeeeecCcccccccHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCcCC--------cceEec-----cHhHHHHHHC--C
Confidence 345666677765 588888887743333221111 1111 1222222 111111 1234444544 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHHHH
Q 017953 249 ISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTV 322 (363)
Q Consensus 249 ~~~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~~l 322 (363)
.+.+| ++.-||++|.+|. +.++.+.+.. ++ |...|.+- ++|.+++.+++.+
T Consensus 213 ---~~~ed--I~aGl~~sia~rv--------~~~~~~~~i~-------~~--v~~~GGva-~N~~l~~al~~~L 263 (293)
T TIGR03192 213 ---YTKNM--VIAAYCQAMAERV--------VSLLERIGVE-------EG--FFITGGIA-KNPGVVKRIERIL 263 (293)
T ss_pred ---CCHHH--HHHHHHHHHHHHH--------HHHhcccCCC-------CC--EEEECccc-ccHHHHHHHHHHh
Confidence 33444 6778999999993 3334444321 22 57788865 7788877777655
No 49
>PRK10331 L-fuculokinase; Provisional
Probab=40.84 E-value=1.5e+02 Score=30.51 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=33.9
Q ss_pred EEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 017953 301 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 355 (363)
Q Consensus 301 V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~ 355 (363)
|-+.|+. -+.|.+.+.+.+.+ + ..|+.....+++.+|||++|+++.
T Consensus 393 i~~~GGg-a~s~~w~Qi~Advl----g----~pV~~~~~~e~~a~GaA~la~~~~ 438 (470)
T PRK10331 393 LLLVGGG-SRNALWNQIKANML----D----IPIKVLDDAETTVAGAAMFGWYGV 438 (470)
T ss_pred EEEEccc-ccCHHHHHHHHHhc----C----CeeEecCcccchHHHHHHHHHHhc
Confidence 4456665 38888887776643 3 467777778899999999999875
No 50
>PLN02295 glycerol kinase
Probab=35.45 E-value=1.9e+02 Score=30.16 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=35.4
Q ss_pred EEEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcc
Q 017953 300 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 356 (363)
Q Consensus 300 ~V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~~ 356 (363)
.|-+.|+. -+.|.+.+.+-+.+ + ..|.....++++.+|||++|+++.-
T Consensus 415 ~i~~~GGg-a~s~~w~Qi~ADv~----g----~pV~~~~~~e~~alGaA~~A~~~~G 462 (512)
T PLN02295 415 LLRVDGGA-TANNLLMQIQADLL----G----SPVVRPADIETTALGAAYAAGLAVG 462 (512)
T ss_pred eEEEeccc-hhCHHHHHHHHHhc----C----CceEecCccccHHHHHHHHHHhhcC
Confidence 46567765 48888888776643 3 4677667788999999999988763
No 51
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=31.85 E-value=6e+02 Score=26.37 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=45.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCc
Q 017953 263 LCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDG 342 (363)
Q Consensus 263 i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~Dg 342 (363)
++++|.+=.|.-.+-.+-.+....+.. .. .|-+.|+-- +++.+.+.+.+.+ + ..|......+.
T Consensus 375 l~ravlEgva~~l~~~~~~l~~~~g~~-------~~-~i~~~GGga-rs~~w~Qi~Ad~~----g----~~v~~~~~~e~ 437 (502)
T COG1070 375 LARAVLEGVAFALADGLEALEELGGKP-------PS-RVRVVGGGA-RSPLWLQILADAL----G----LPVVVPEVEEA 437 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-------cc-EEEEECCcc-cCHHHHHHHHHHc----C----CeeEecCcccc
Confidence 344555544444454554444443432 11 466678776 5688888777644 3 46776767788
Q ss_pred hHHHHHHHHHHhc
Q 017953 343 SGIGAALLAASHS 355 (363)
Q Consensus 343 S~~GAAi~aa~~~ 355 (363)
+..|+|+.++.+.
T Consensus 438 ~a~g~A~~~~~~~ 450 (502)
T COG1070 438 GALGGAALAAAAL 450 (502)
T ss_pred hHHHHHHHHHHHh
Confidence 8777777776654
No 52
>PRK03011 butyrate kinase; Provisional
Probab=29.61 E-value=5.2e+02 Score=25.88 Aligned_cols=69 Identities=20% Similarity=0.164 Sum_probs=50.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCch
Q 017953 264 CDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGS 343 (363)
Q Consensus 264 ~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS 343 (363)
|+.+.++.++.+|-.|+++...++.+ +. .|.+.|++-+ .+.+++.+++.+..+ ..+.+.+++++.
T Consensus 270 A~~ald~~~~~lak~I~~l~~~L~gd-------pD-~IVlgGGI~~-~~~l~~~I~~~l~~~------~pv~i~p~~~e~ 334 (358)
T PRK03011 270 AKLVYEAMAYQIAKEIGAMAAVLKGK-------VD-AIVLTGGLAY-SKRLVERIKERVSFI------APVIVYPGEDEM 334 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-------CC-EEEEeCcccc-CHHHHHHHHHHHHhh------CCeEEEeCCCHH
Confidence 55677778888888888888888431 11 3567888876 789999999999876 258888888774
Q ss_pred HHHH
Q 017953 344 GIGA 347 (363)
Q Consensus 344 ~~GA 347 (363)
--+|
T Consensus 335 ~A~a 338 (358)
T PRK03011 335 EALA 338 (358)
T ss_pred HHHH
Confidence 4333
No 53
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=28.11 E-value=3.1e+02 Score=28.22 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=30.0
Q ss_pred EEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 017953 301 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 355 (363)
Q Consensus 301 V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~ 355 (363)
|-+.|+. -+.+.+.+.+-+.+ + ..|.... .+++.+|||++|+++.
T Consensus 379 i~~~GGg-a~s~~w~Qi~ADvl----g----~pV~~~~-~ea~alGaa~~a~~a~ 423 (471)
T PRK10640 379 LHIVGGG-CQNALLNQLCADAC----G----IRVIAGP-VEASTLGNIGIQLMTL 423 (471)
T ss_pred EEEECCh-hhhHHHHHHHHHHh----C----CCeeeCC-hhHHHHHHHHHHHHHc
Confidence 4456665 46777777666544 3 3554333 4799999999998865
No 54
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=27.92 E-value=3e+02 Score=28.05 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=30.7
Q ss_pred EEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcc
Q 017953 301 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 356 (363)
Q Consensus 301 V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~DgS~~GAAi~aa~~~~ 356 (363)
|-+.|+. -+.+.+.+.+-+.+ + ..|... .++++.+|||++|+++.-
T Consensus 391 i~~~GGg-a~s~~w~Qi~ADvl----g----~pV~~~-~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 391 LHIVGGG-SQNAFLNQLCADAC----G----IRVIAG-PVEASTLGNIGVQLMALD 436 (454)
T ss_pred EEEECCh-hhhHHHHHHHHHHh----C----CceEcC-CchHHHHHHHHHHHHhcC
Confidence 4456664 37777777665543 3 356533 366899999999998763
No 55
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.70 E-value=25 Score=37.30 Aligned_cols=31 Identities=42% Similarity=0.568 Sum_probs=24.3
Q ss_pred chhhhccCCCCCc--ceeeeeccccchHHHHHHHHH
Q 017953 164 DEALDTESLNPGE--QIFEKIISGMYLGEIVRRVLC 197 (363)
Q Consensus 164 D~~~D~~s~~pg~--q~~EkmvsG~YLGEl~R~il~ 197 (363)
|.....-|.|||. +|+.|..|| |||.|..|.
T Consensus 411 d~VeF~istNpG~~~~PL~KvASG---GELSRimLA 443 (557)
T COG0497 411 DKVEFLISTNPGEPLKPLAKVASG---GELSRIMLA 443 (557)
T ss_pred ceEEEEEeCCCCCCCccHHhhcch---hHHHHHHHH
Confidence 4444445789985 999999999 999998764
No 56
>PLN02544 phosphoribosylaminoimidazole-succinocarboxamide synthase
Probab=25.57 E-value=2.3e+02 Score=28.69 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=57.4
Q ss_pred ceeeeeccccchHHHHHHHHHHHHhhc-CCCCCCCCCCCCCCCccCchhhhcc----ccCCCCChHHHHHHHhhhhCCCC
Q 017953 177 QIFEKIISGMYLGEIVRRVLCRMAEEA-NFFGDTVPPKLKIPFILRTPHMSAM----HHDTSPDLRVVGKKLKDILEISN 251 (363)
Q Consensus 177 q~~EkmvsG~YLGEl~R~il~~~~~~~-~lf~~~~~~~l~~~~~~~t~~ls~i----~~d~~~~~~~~~~il~~~~~~~~ 251 (363)
-|+|-.+-|.--|-++|....+|.+.+ .+-+-.+|+.+..-..|+...+..- +.|+.-+.+.+ +. +++
T Consensus 154 iPlEvVvR~y~tGS~~~slw~~Y~~g~~~~~Gi~lpeGl~eg~kLp~PI~tpstK~d~hD~~Is~~~i---~~--~g~-- 226 (370)
T PLN02544 154 FPVEFVVRGYMTGSTSTSLWTVYNKGVRNYCGNDLPDGMVKNQKLPANILTPTTKAADHDVPISPEEI---VE--EGL-- 226 (370)
T ss_pred eeEEEEEEeeeeccchHHHHHHHhccCcccccccCCCCccccCCCCCCeEEEeeccccCCCCCCHHHH---HH--hcC--
Confidence 689999999888999999888887643 2222234544433333332221111 24443333222 22 344
Q ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHH
Q 017953 252 TSLKMRKLVVELCDIVATRGARLSAA 277 (363)
Q Consensus 252 ~~~~d~~~vr~i~~~V~~RAA~L~aa 277 (363)
.+.+++..++.++..|.++++.+.+.
T Consensus 227 ~~~ee~~~i~~~alki~~~l~~~~~~ 252 (370)
T PLN02544 227 MTQEDFDEVSSKALALFAFGQEVAAE 252 (370)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999988777653
No 57
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=25.42 E-value=2.4e+02 Score=28.89 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=56.9
Q ss_pred Ccceeeeec--cccchHHHHHHHHHHHHhhcCC-CCCCCCCCCCCCCccCchhhhccccCCCCChHHHHHHHhhhhCCCC
Q 017953 175 GEQIFEKII--SGMYLGEIVRRVLCRMAEEANF-FGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISN 251 (363)
Q Consensus 175 g~q~~Ekmv--sG~YLGEl~R~il~~~~~~~~l-f~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~ 251 (363)
.++.=+|.. +|+||-.+.|+.=+++-+-+.+ .++. ..|..+.+.-.-.. .+.+...+.+ |
T Consensus 265 dF~MNdkCAAGTGrFLE~~A~~Lgi~ieEl~~lA~~~~-----~~pv~IsS~CtVFa-------eSevIsll~~--G--- 327 (404)
T TIGR03286 265 NFTMGGICAGASGRFLEMTAKRLGVDITELGKLALKGM-----PEKVRMNSYCIVFG-------IQDLVTALAE--G--- 327 (404)
T ss_pred eEEEcCcccccCcHHHHHHHHHhCCCHHHHHHHHHhCC-----CCCCCccCcccccc-------cHhHHHHHHC--C---
Confidence 367778888 8999999998864444322221 1111 01122221111111 1223333432 3
Q ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHHHH
Q 017953 252 TSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTV 322 (363)
Q Consensus 252 ~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~~l 322 (363)
.+.+| ++.-+|++|.+|.+. .++++.+. +-.|.+.|++ -+++...+.+.+.+
T Consensus 328 ~~~eD--IaAGl~~SIa~rv~~-------~l~~~~~i---------~~~VvftGGv-a~N~gvv~ale~~L 379 (404)
T TIGR03286 328 ASPED--VAAAACHSVAEQVYE-------QQLQEIDV---------REPVILVGGT-SLIEGLVKALGDLL 379 (404)
T ss_pred CCHHH--HHHHHHHHHHHHHHH-------HHhhcCCC---------CCcEEEECCh-hhhHHHHHHHHHHh
Confidence 33444 566889999888764 22233322 1137788885 45566655555533
No 58
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=23.48 E-value=79 Score=24.47 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=9.9
Q ss_pred EEEEeccHHhhhc
Q 017953 90 AALVNDTIGTLAG 102 (363)
Q Consensus 90 ~aivNDTVaTlla 102 (363)
+.+.||.-+|..|
T Consensus 87 v~~~nDa~st~~a 99 (99)
T smart00732 87 VVLVDERLATVYA 99 (99)
T ss_pred EEEEeCCcccccC
Confidence 5688999887643
No 59
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=22.02 E-value=3.3e+02 Score=26.14 Aligned_cols=112 Identities=19% Similarity=0.189 Sum_probs=59.8
Q ss_pred CCcceeeeecc--ccchHHHHHHHHHHHHhhcCC-CCCCCCCCCCCCCccCchhhhccccCCCCChHHHHHHHhhhhCCC
Q 017953 174 PGEQIFEKIIS--GMYLGEIVRRVLCRMAEEANF-FGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEIS 250 (363)
Q Consensus 174 pg~q~~Ekmvs--G~YLGEl~R~il~~~~~~~~l-f~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~ 250 (363)
..++.=+|.-+ |+||-.+.|..=+++-+-+.+ +...-|..+.. +|.+.. .+.+...+.+ |
T Consensus 121 ~~f~MNdkCAAGTG~FLe~~A~~L~i~leel~~~a~~~~~~~~iss--------~CtVFa-----eSevi~~~~~--G-- 183 (262)
T TIGR02261 121 EAYKMTSQCASGSGQFLENIARYLGIAQDEIGSLSQQADNPEKVSG--------ICAVLA-----ETDVINMVSR--G-- 183 (262)
T ss_pred eeEEecCcccccccHHHHHHHHHhCCCHHHHHHHHhcCCCCCCcCC--------CceEEc-----hhhHHHHHHC--C--
Confidence 34566677765 589988888653333222211 11222222221 122111 1234444443 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceeecccHhHHHHHHHHH
Q 017953 251 NTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTV 322 (363)
Q Consensus 251 ~~~~~d~~~vr~i~~~V~~RAA~L~aa~iaai~~~~~~~~~~~~~~~~v~V~vdGS~~~~~p~f~~~~~~~l 322 (363)
.+.+| ++.-||++|.+|.+.++ ++++.. +-.|...|.+. +++.+.+.+++.+
T Consensus 184 -~~~ed--I~aGl~~sia~r~~~~~--------~~~~~~--------~~~v~~~GGva-~n~~~~~~le~~l 235 (262)
T TIGR02261 184 -ISAPN--ILKGIHESMADRLAKLL--------KSLGAL--------DGTVLCTGGLA-LDAGLLEALKDAI 235 (262)
T ss_pred -CCHHH--HHHHHHHHHHHHHHHHH--------hccCCC--------CCcEEEECccc-ccHHHHHHHHHHh
Confidence 33444 56788999999865443 344321 12377899965 7888888877766
No 60
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=21.98 E-value=1.1e+02 Score=30.18 Aligned_cols=51 Identities=25% Similarity=0.348 Sum_probs=36.9
Q ss_pred EEEeceeecccHhHHHHHHHHHHHHhCCCCcccEEEEE----cCCchHHHHHHHHHHh
Q 017953 301 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEH----SNDGSGIGAALLAASH 354 (363)
Q Consensus 301 V~vdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~----~~DgS~~GAAi~aa~~ 354 (363)
|-+.|+. -..|+|.+++++-|..+.++.. ++++.. ...++-+||++.|...
T Consensus 314 Ivl~GG~-S~i~G~~eRL~~eL~~~~~~~~--~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 314 IVLTGGS-SLIPGFKERLQQELRSLLPSST--KVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp EEEESGG-GGSTTHHHHHHHHHHHHSGTTS--TEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred eEEeccc-ccccchHHHHHHHhhhhhhccc--cceeccCchhhhhcccccceeeeccc
Confidence 4445554 4789999999999999866543 455554 4467899999999765
No 61
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=21.51 E-value=4.6e+02 Score=25.38 Aligned_cols=26 Identities=8% Similarity=0.098 Sum_probs=22.4
Q ss_pred EEEEeceeecccHhHHHHHHHHHHHH
Q 017953 300 VIALDGGLFEHYTKFSACMQSTVKEL 325 (363)
Q Consensus 300 ~V~vdGS~~~~~p~f~~~~~~~l~~l 325 (363)
.|.+-|+.+..+|..++.+.++++-.
T Consensus 233 ~IvF~Gg~L~~~~~l~~~~~~~~~~~ 258 (279)
T TIGR00555 233 RIVFIGSFLRNNQLLMKVLSYATNFW 258 (279)
T ss_pred eEEEECCcccCCHHHHHHHHHHHhhc
Confidence 48899999999999999999887633
No 62
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=20.60 E-value=1.1e+02 Score=23.69 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.7
Q ss_pred CCCcHHHHHHHHHHHhCCCceE
Q 017953 68 VGEDVVGELTKAMERIGLDMRV 89 (363)
Q Consensus 68 ~G~dv~~lL~~al~r~~~~v~v 89 (363)
-|..+.+.|..++++||++..-
T Consensus 18 pG~ti~d~L~kllekRgl~~~~ 39 (73)
T cd01817 18 PGESIRDLLSGLCEKRGINYAA 39 (73)
T ss_pred CCCCHHHHHHHHHHHcCCChhH
Confidence 3789999999999999987543
No 63
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=20.05 E-value=60 Score=29.94 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=23.6
Q ss_pred CCCCcHHHHHHHHHHHh----CCCceEEEEEec
Q 017953 67 TVGEDVVGELTKAMERI----GLDMRVAALVND 95 (363)
Q Consensus 67 v~G~dv~~lL~~al~r~----~~~v~v~aivND 95 (363)
+.|.-....|+..+++- |++++|++|-|+
T Consensus 103 vTG~la~~~l~~~~~~l~~~~~~~v~V~~V~N~ 135 (204)
T PF04459_consen 103 VTGVLAYPFLKPLVEKLNRIPGLEVEVVPVKNR 135 (204)
T ss_pred EeeHHHHHHHHHHHHHHhccCCCeEEEEEeecC
Confidence 46777777887777665 789999999999
Done!