Query 017954
Match_columns 363
No_of_seqs 373 out of 1714
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:53:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1778 CREB binding protein/P 100.0 5E-38 1.1E-42 296.7 8.8 290 35-336 27-318 (319)
2 PHA02713 hypothetical protein; 99.9 1.4E-26 3E-31 238.6 18.8 165 21-192 10-177 (557)
3 PHA02790 Kelch-like protein; P 99.9 5.8E-26 1.3E-30 230.4 15.9 141 34-180 23-167 (480)
4 PHA03098 kelch-like protein; P 99.9 3.5E-25 7.7E-30 227.5 18.5 149 34-192 10-159 (534)
5 KOG4441 Proteins containing BT 99.9 5.1E-25 1.1E-29 226.8 17.3 145 34-182 37-181 (571)
6 KOG4350 Uncharacterized conser 99.9 2E-24 4.3E-29 204.4 10.3 166 22-192 30-199 (620)
7 smart00551 ZnF_TAZ TAZ zinc fi 99.8 6.6E-20 1.4E-24 139.6 7.4 77 211-305 1-79 (79)
8 KOG2075 Topoisomerase TOP1-int 99.8 1.3E-18 2.8E-23 168.6 17.9 164 16-182 94-265 (521)
9 KOG4591 Uncharacterized conser 99.8 1.5E-19 3.1E-24 157.2 8.6 190 20-219 50-244 (280)
10 PF00651 BTB: BTB/POZ domain; 99.7 4.8E-17 1E-21 132.0 10.9 100 33-134 10-110 (111)
11 KOG0783 Uncharacterized conser 99.7 1.6E-16 3.5E-21 161.6 9.2 161 35-196 712-876 (1267)
12 smart00225 BTB Broad-Complex, 99.6 8.9E-16 1.9E-20 118.2 9.6 90 35-128 1-90 (90)
13 KOG4682 Uncharacterized conser 99.6 4.8E-15 1E-19 141.1 10.6 160 28-199 61-227 (488)
14 PF02135 zf-TAZ: TAZ zinc fing 99.2 9.1E-12 2E-16 94.6 4.1 72 216-304 2-75 (75)
15 KOG0511 Ankyrin repeat protein 98.8 2.9E-08 6.4E-13 94.5 9.7 133 44-179 301-442 (516)
16 KOG2838 Uncharacterized conser 98.5 1.6E-07 3.4E-12 86.1 5.1 122 22-143 221-396 (401)
17 KOG0783 Uncharacterized conser 98.5 1.5E-07 3.3E-12 97.1 4.9 79 20-99 538-634 (1267)
18 KOG1987 Speckle-type POZ prote 98.1 3.4E-06 7.4E-11 80.5 5.0 144 43-190 109-257 (297)
19 KOG2716 Polymerase delta-inter 98.1 2.6E-05 5.7E-10 71.1 10.4 97 36-134 7-104 (230)
20 KOG2838 Uncharacterized conser 97.9 3.6E-05 7.7E-10 70.9 7.8 103 18-122 112-220 (401)
21 KOG3473 RNA polymerase II tran 97.9 9.3E-05 2E-09 57.7 8.2 83 36-119 19-111 (112)
22 smart00512 Skp1 Found in Skp1 97.7 0.00029 6.4E-09 56.6 8.7 62 35-97 3-64 (104)
23 PF07707 BACK: BTB And C-termi 97.4 0.00032 7E-09 55.6 6.1 43 140-182 1-43 (103)
24 PF11822 DUF3342: Domain of un 97.4 0.00028 6.1E-09 67.1 5.5 89 44-134 14-103 (317)
25 PF03931 Skp1_POZ: Skp1 family 97.3 0.0015 3.3E-08 47.4 7.6 57 36-96 3-59 (62)
26 PF02214 BTB_2: BTB/POZ domain 97.2 0.00022 4.8E-09 56.1 2.9 89 36-127 1-94 (94)
27 smart00875 BACK BTB And C-term 97.0 0.002 4.2E-08 50.5 6.0 43 140-182 1-43 (101)
28 KOG1724 SCF ubiquitin ligase, 96.8 0.013 2.9E-07 50.8 9.9 99 36-136 7-128 (162)
29 KOG0511 Ankyrin repeat protein 96.3 0.0051 1.1E-07 59.4 4.7 88 34-126 150-237 (516)
30 COG5201 SKP1 SCF ubiquitin lig 95.7 0.13 2.9E-06 42.4 9.6 99 35-137 3-124 (158)
31 KOG2714 SETA binding protein S 95.0 0.094 2E-06 51.7 7.9 88 36-125 13-102 (465)
32 KOG1665 AFH1-interacting prote 94.8 0.093 2E-06 47.5 6.7 92 35-129 10-105 (302)
33 KOG2715 Uncharacterized conser 89.0 2.4 5.1E-05 36.9 7.8 96 36-134 23-121 (210)
34 PF02135 zf-TAZ: TAZ zinc fing 87.7 0.84 1.8E-05 34.2 3.9 53 258-312 6-60 (75)
35 PF01466 Skp1: Skp1 family, di 83.6 2.1 4.5E-05 32.4 4.3 43 106-148 14-59 (78)
36 KOG2075 Topoisomerase TOP1-int 77.9 4.7 0.0001 40.7 5.7 58 135-195 185-247 (521)
37 PF11822 DUF3342: Domain of un 76.4 3.1 6.7E-05 40.0 3.8 74 121-198 59-133 (317)
38 smart00551 ZnF_TAZ TAZ zinc fi 76.0 3.8 8.3E-05 31.2 3.6 51 258-311 10-62 (79)
39 KOG2723 Uncharacterized conser 72.3 11 0.00024 34.4 6.3 91 36-129 11-104 (221)
40 PF00651 BTB: BTB/POZ domain; 62.2 14 0.00029 28.9 4.3 30 137-166 81-110 (111)
41 KOG3840 Uncharaterized conserv 61.8 11 0.00023 36.1 4.0 85 35-121 97-185 (438)
42 PF07707 BACK: BTB And C-termi 55.6 23 0.0005 27.3 4.5 26 109-134 2-27 (103)
43 PF03000 NPH3: NPH3 family; I 53.0 67 0.0015 30.1 7.8 64 82-147 68-132 (258)
44 PHA03098 kelch-like protein; P 35.2 64 0.0014 33.2 5.2 33 135-167 73-105 (534)
45 PHA02713 hypothetical protein; 31.6 79 0.0017 33.0 5.2 34 134-167 90-123 (557)
46 TIGR02425 decarb_PcaC 4-carbox 31.2 3E+02 0.0064 22.6 10.7 80 78-157 27-110 (123)
47 PF02519 Auxin_inducible: Auxi 27.8 1.7E+02 0.0037 23.2 5.4 59 33-94 38-99 (100)
48 TIGR02183 GRXA Glutaredoxin, G 26.7 42 0.00091 25.4 1.6 17 274-290 8-24 (86)
49 PHA02790 Kelch-like protein; P 26.0 81 0.0018 32.2 4.1 32 135-166 88-119 (480)
50 PF01466 Skp1: Skp1 family, di 25.8 1.4E+02 0.0031 22.2 4.4 34 134-167 10-43 (78)
51 smart00875 BACK BTB And C-term 22.6 96 0.0021 23.3 3.1 26 109-134 2-27 (101)
52 PF00462 Glutaredoxin: Glutare 20.3 75 0.0016 21.8 1.8 14 274-287 7-20 (60)
No 1
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=100.00 E-value=5e-38 Score=296.67 Aligned_cols=290 Identities=42% Similarity=0.673 Sum_probs=254.2
Q ss_pred CEEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeCCCCHHHHHHHHHhhhCCCcCccchHHHHHHHHHH
Q 017954 35 DVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLAL 114 (363)
Q Consensus 35 DV~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~~~L~flYt~~~~~~~~~~~~~~Ll~l 114 (363)
|+..+..++..+.+|+.+|+..|+.|..+.... ...+..+.+.+.+++..++..+.+++|.+ ++..++.....+++.+
T Consensus 27 ~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~ 104 (319)
T KOG1778|consen 27 DVEIVTDVKDLIPAHSLVLGPASPVFKKVLKQP-CRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLAL 104 (319)
T ss_pred chhhhhhhhhhhHHHHhcccccchHHHHHHhhh-cchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhh
Confidence 455554466789999999999999999887766 33244556888899999999999999998 6655556889999999
Q ss_pred HhhcCchhHHHHHHHHHHh-cCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcchhhhhccccChHHHHHHHHH
Q 017954 115 SHVYSVPQLKQRCTKGLGE-RLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQF 193 (363)
Q Consensus 115 Ad~y~v~~Lk~~ce~~L~~-~l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~nf~~v~~~e~f~~L~~~~p~l~~ell~~ 193 (363)
.+.|.++.++..|...+.. .++..+++.++..+..|+.+.|...+...+...|....+++.|..+....+.+.+ ...
T Consensus 105 ~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c~~c~~~~--~~~ 182 (319)
T KOG1778|consen 105 SHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTCPICKLEV--LTA 182 (319)
T ss_pred hhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeecCcccccc--ccc
Confidence 9999999999999888877 4789999999999999999999999999999999999999999888877666654 555
Q ss_pred HHhhhhhhhhhhhhhhhhhHHHhhhhhHHHHHHHhhhcCCCCCCCcCCCCCCCCCCCCCcchhhhhHhhhhhcccccccC
Q 017954 194 MDEAESRIKRTRRRRQEQGLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRVN 273 (363)
Q Consensus 194 ~~~~~~~~~~~~r~~~e~~vy~~l~~~~~~l~h~~~~~~~~~~p~~~~~~~~~~~c~~~~~c~~l~~l~~H~~~c~~r~~ 273 (363)
+...........+...++..|.|+.+++.+ |++||.++||+.+..+.++++|+ |+.|.++++|++|++.|++|
T Consensus 183 ~~c~~~~d~d~~~~~~~k~~h~h~~~~~~~----~~~~~~~~~~~~~~i~~~~~~C~-~~~C~~~k~lirH~~~Ck~R-- 255 (319)
T KOG1778|consen 183 WHCEVCPDYDRCRACEEKPLHPHLYEAMES----CTDGCATIGPRNKSINRRDANCS-YPSCNGLKRLIRHFRGCKLR-- 255 (319)
T ss_pred cccccCCchhhhhcccCCCCCCcchhcccc----cccccccccchhhhhccCCCCCC-CchhHHHHHHHHHHHHHHhc--
Confidence 555566666777777888889999999888 89999999999999987789999 99999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhcCCCCCCcCCcchHhHHHHhhhhcC-chhHHHHHHHHHHhhhhcc
Q 017954 274 GGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLKAQLEKKG-DDGRWRLLVKKVVSAKTIS 336 (363)
Q Consensus 274 ~gc~~c~r~~~l~~~h~~~c~~~~~c~vp~c~~~k~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 336 (363)
|||++|++||||++|||++|++++ |+||+|+++|+++++++++ ++.+|++++++|..++.++
T Consensus 256 ~gC~iCk~m~~L~~lha~~c~~~~-C~vP~c~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T KOG1778|consen 256 GGCPICKRLWQLLELHARHCDDSK-CKVPLCRNLKQKLEKQQKQADERRWKLLVRRVAGTKADG 318 (319)
T ss_pred cCCchHHHHHHHHHHHHHHccccc-CCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHhhhccc
Confidence 999999999999999999999998 9999999999999999776 9999999999998877654
No 2
>PHA02713 hypothetical protein; Provisional
Probab=99.94 E-value=1.4e-26 Score=238.59 Aligned_cols=165 Identities=15% Similarity=0.174 Sum_probs=147.5
Q ss_pred chhHHhHhhccCC---CCEEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeCCCCHHHHHHHHHhhhCC
Q 017954 21 TTLTKENAPAFYE---PDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTS 97 (363)
Q Consensus 21 s~l~~dl~~L~~~---~DV~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~~~L~flYt~ 97 (363)
..+...+.+|..+ +||+|.+++|++|+|||.|||++|+||++||.++++|.+.+..|.|.++++++|+.+|+|+||+
T Consensus 10 ~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~ 89 (557)
T PHA02713 10 RRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNR 89 (557)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCC
Confidence 4566778887775 6999999448999999999999999999999999987545778999999999999999999999
Q ss_pred CcCccchHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcchhhh
Q 017954 98 RCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWK 177 (363)
Q Consensus 98 ~~~~~~~~~~~~~Ll~lAd~y~v~~Lk~~ce~~L~~~l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~nf~~v~~~e~f~ 177 (363)
.+ + .+++.+||.+|++|+++.|++.|++||.+.++++||++++.+|..+.+..|.+.|.+||.+||.++.++++|.
T Consensus 90 ~i--~--~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~ 165 (557)
T PHA02713 90 HI--S--SMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFK 165 (557)
T ss_pred CC--C--HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhh
Confidence 74 3 3789999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred hccccChHHHHHHHH
Q 017954 178 FLQDHDPWLELQILQ 192 (363)
Q Consensus 178 ~L~~~~p~l~~ell~ 192 (363)
.|+.+ .+.++|.
T Consensus 166 ~L~~~---~l~~lL~ 177 (557)
T PHA02713 166 KTVFE---ILFDIIS 177 (557)
T ss_pred hCCHH---HHHHHhc
Confidence 88755 4444444
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=5.8e-26 Score=230.38 Aligned_cols=141 Identities=17% Similarity=0.241 Sum_probs=131.1
Q ss_pred CCEEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEe--CCCCHHHHHHHHHhhhCCCcCccchHHHHHHH
Q 017954 34 PDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPI--LGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHL 111 (363)
Q Consensus 34 ~DV~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l--~~v~~~~f~~~L~flYt~~~~~~~~~~~~~~L 111 (363)
+||++.+ |++|+|||+|||+.||||++||.++++|. .. .|.+ .++++++|+.+|+|+|||++.++. +++.++
T Consensus 23 ~~~~~~~--~~~~~~HR~VLAa~S~YFraMF~~~~~Es-~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~--~nV~~l 96 (480)
T PHA02790 23 KTIIEAI--GGNIIVNSTILKKLSPYFRTHLRQKYTKN-KD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDS--HNVVNL 96 (480)
T ss_pred ceEEEEc--CcEEeeehhhhhhcCHHHHHHhcCCcccc-cc-ceEEEecCcCHHHHHHHHHhheeeeEEEec--ccHHHH
Confidence 6999877 56999999999999999999999999984 33 4554 499999999999999999999986 899999
Q ss_pred HHHHhhcCchhHHHHHHHHHHhcCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc--hhhhhcc
Q 017954 112 LALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKT--EGWKFLQ 180 (363)
Q Consensus 112 l~lAd~y~v~~Lk~~ce~~L~~~l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~nf~~v~~~--e~f~~L~ 180 (363)
+.+|++|+++.+++.|.+||.+.|+++||++++.+|+.|++.+|.+.+.+||.+||.++.++ ++|..|+
T Consensus 97 l~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~ 167 (480)
T PHA02790 97 LRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLS 167 (480)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999986 8898876
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.93 E-value=3.5e-25 Score=227.48 Aligned_cols=149 Identities=17% Similarity=0.276 Sum_probs=137.5
Q ss_pred CCEEEEec-CCeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeCCCCHHHHHHHHHhhhCCCcCccchHHHHHHHH
Q 017954 34 PDVQILTS-GGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLL 112 (363)
Q Consensus 34 ~DV~~~v~-~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~~~L~flYt~~~~~~~~~~~~~~Ll 112 (363)
+||+|.+. +|++|+|||.||+++|+||++||.++++ +..|.|.+ ++++|+.+|+|+|||.+.++. +++.+|+
T Consensus 10 ~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~----~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~--~~~~~ll 82 (534)
T PHA03098 10 CDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK----ENEINLNI-DYDSFNEVIKYIYTGKINITS--NNVKDIL 82 (534)
T ss_pred CCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC----CceEEecC-CHHHHHHHHHHhcCCceEEcH--HHHHHHH
Confidence 79999873 7899999999999999999999999876 45699999 999999999999999998885 8899999
Q ss_pred HHHhhcCchhHHHHHHHHHHhcCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcchhhhhccccChHHHHHHHH
Q 017954 113 ALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQ 192 (363)
Q Consensus 113 ~lAd~y~v~~Lk~~ce~~L~~~l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~nf~~v~~~e~f~~L~~~~p~l~~ell~ 192 (363)
.+|++|+++.|+..|+++|...++.+||+.++.+|..|++..|.+.|.+||..||.++.++++|..|+.+ .+.++|.
T Consensus 83 ~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~---~l~~ll~ 159 (534)
T PHA03098 83 SIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKN---ELIKILS 159 (534)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHH---HHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999854 4444443
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.93 E-value=5.1e-25 Score=226.77 Aligned_cols=145 Identities=23% Similarity=0.362 Sum_probs=140.6
Q ss_pred CCEEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeCCCCHHHHHHHHHhhhCCCcCccchHHHHHHHHH
Q 017954 34 PDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLA 113 (363)
Q Consensus 34 ~DV~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~~~L~flYt~~~~~~~~~~~~~~Ll~ 113 (363)
+||++.+ ++++|+|||.|||+.||||++||.++++| +.+..|.+.+++++++..+++|+||+.+.++. +++.+|+.
T Consensus 37 cDv~L~v-~~~~~~aHR~VLAa~S~YFraMFt~~l~e-~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~--~nVq~ll~ 112 (571)
T KOG4441|consen 37 CDVTLLV-GDREFPAHRVVLAACSPYFRAMFTSGLKE-SKQKEINLEGVDPETLELLLDYAYTGKLEISE--DNVQELLE 112 (571)
T ss_pred ceEEEEE-CCeeechHHHHHHhccHHHHHHhcCCccc-ccceEEEEecCCHHHHHHHHHHhhcceEEech--HhHHHHHH
Confidence 7999999 77999999999999999999999999999 68899999999999999999999999999986 99999999
Q ss_pred HHhhcCchhHHHHHHHHHHhcCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcchhhhhcccc
Q 017954 114 LSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDH 182 (363)
Q Consensus 114 lAd~y~v~~Lk~~ce~~L~~~l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~nf~~v~~~e~f~~L~~~ 182 (363)
+|+.|+++.+.+.|.+||...++++||+.+..+|+.|++.+|.+.+..||..||.++..+++|..|+.+
T Consensus 113 aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~ 181 (571)
T KOG4441|consen 113 AASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLE 181 (571)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998865
No 6
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.91 E-value=2e-24 Score=204.43 Aligned_cols=166 Identities=21% Similarity=0.318 Sum_probs=151.3
Q ss_pred hhHHhHhhccCC---CCEEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeCCCCHHHHHHHHHhhhCCC
Q 017954 22 TLTKENAPAFYE---PDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSR 98 (363)
Q Consensus 22 ~l~~dl~~L~~~---~DV~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~~~L~flYt~~ 98 (363)
.+++++..+|-+ +||+|++ +++.|+|||.|||+||.||++|+.++|.| +.+..|.+.+-..++|+.+|+|||||+
T Consensus 30 ~fS~~~~~l~~~e~y~DVtfvv-e~~rfpAHRvILAaRs~yFRAlLYgGm~E-s~q~~ipLq~t~~eAF~~lLrYiYtg~ 107 (620)
T KOG4350|consen 30 NFSQSFDELFTSEDYSDVTFVV-EDTRFPAHRVILAARSSYFRALLYGGMQE-SHQQLIPLQETNSEAFRALLRYIYTGK 107 (620)
T ss_pred chhHHHHHHhhcCcccceEEEE-eccccchhhhhHHHHHHHHHHHHhhhhhh-hhhcccccccccHHHHHHHHHHHhhcc
Confidence 456777777764 7999999 78999999999999999999999999999 578899999999999999999999999
Q ss_pred cCccch-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcchhhh
Q 017954 99 CTEEEM-EKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWK 177 (363)
Q Consensus 99 ~~~~~~-~~~~~~Ll~lAd~y~v~~Lk~~ce~~L~~~l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~nf~~v~~~e~f~ 177 (363)
+..... ++.+++.|.+|++|+++.|.....+||.+.+..+|++.++..|..|+.++|.+.|+.|+-+|..+++..++|.
T Consensus 108 ~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn 187 (620)
T KOG4350|consen 108 IDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFN 187 (620)
T ss_pred eecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchh
Confidence 986533 4789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccChHHHHHHHH
Q 017954 178 FLQDHDPWLELQILQ 192 (363)
Q Consensus 178 ~L~~~~p~l~~ell~ 192 (363)
.|+.+ -+.|++.
T Consensus 188 ~LSk~---sL~e~l~ 199 (620)
T KOG4350|consen 188 RLSKD---SLKELLA 199 (620)
T ss_pred hhhHH---HHHHHHh
Confidence 99877 5555554
No 7
>smart00551 ZnF_TAZ TAZ zinc finger, present in p300 and CBP.
Probab=99.81 E-value=6.6e-20 Score=139.61 Aligned_cols=77 Identities=38% Similarity=0.809 Sum_probs=71.2
Q ss_pred hhHHHhhhhhHHHHHHHhhhcCCCCCCCcCCCCCCCCCCCCCcchhhhhHhhhhhcccccc--cCCCChhhHHHHHHHHH
Q 017954 211 QGLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKR--VNGGCLRCKRMWQLLRL 288 (363)
Q Consensus 211 ~~vy~~l~~~~~~l~h~~~~~~~~~~p~~~~~~~~~~~c~~~~~c~~l~~l~~H~~~c~~r--~~~gc~~c~r~~~l~~~ 288 (363)
+.+|.+|+++|++|+||++ |+..| ++|. +++|.+||.|++|+++|+.| ..|||..||+||+
T Consensus 1 ~~~~~~lq~~l~~L~Ha~~--C~~~~----------~~C~-~~~C~~~k~L~~H~~~C~~~~C~~~~C~~ck~~~~---- 63 (79)
T smart00551 1 QTRYKQLQRWLELLVHARR--CKARE----------AKCQ-YPNCKTMKKLLRHMDSCKVRKCKYGYCASCKQLWQ---- 63 (79)
T ss_pred CcHHHHHHHHHHHHHHHHh--CCCCC----------CCCC-CchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH----
Confidence 3579999999999999998 97553 6899 99999999999999999999 8899999999999
Q ss_pred HHhhcCCCCCCcCCcch
Q 017954 289 HSSMCEQSDSCRVPLCR 305 (363)
Q Consensus 289 h~~~c~~~~~c~vp~c~ 305 (363)
|++.|++++ |+||+|+
T Consensus 64 H~k~C~~~~-C~Vc~c~ 79 (79)
T smart00551 64 HSKHCKDSN-CPVCKCV 79 (79)
T ss_pred HHHhcCCCC-CCCCCCC
Confidence 999999988 9999984
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.80 E-value=1.3e-18 Score=168.62 Aligned_cols=164 Identities=25% Similarity=0.369 Sum_probs=143.3
Q ss_pred CCCCcchhHHhHhhccCC---CCEEEEecC----CeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeCCCCHHHHH
Q 017954 16 VHSPVTTLTKENAPAFYE---PDVQILTSG----GLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVS 88 (363)
Q Consensus 16 i~~p~s~l~~dl~~L~~~---~DV~~~v~~----g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~ 88 (363)
-..+.+++..-...++++ +||.|+|++ -+.|+|||.|||..|.+|.+||++++.+. ...+|.++|+.+.+|.
T Consensus 94 wq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~-~s~ei~lpdvepaaFl 172 (521)
T KOG2075|consen 94 WQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAED-ASLEIRLPDVEPAAFL 172 (521)
T ss_pred cccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccc-cCceeecCCcChhHhH
Confidence 334445555555566664 699999963 27899999999999999999999998884 5678999999999999
Q ss_pred HHHHhhhCCCcCccchHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCChhhHHHHHHH-HHHCCCHHHHHHHHHHHHHHH
Q 017954 89 SFVGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQL-ARLCDAPDLYLRCMKLAASRF 167 (363)
Q Consensus 89 ~~L~flYt~~~~~~~~~~~~~~Ll~lAd~y~v~~Lk~~ce~~L~~~l~~~n~~~il~l-A~~~~~~~L~~~c~~~i~~nf 167 (363)
.+|+|||++.+.... ++++.++.+|++|.++.|.+.|.++|...+.+.|.+..+-- |..++-++|...|++-|..+|
T Consensus 173 ~~L~flYsdev~~~~--dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~ 250 (521)
T KOG2075|consen 173 AFLRFLYSDEVKLAA--DTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSF 250 (521)
T ss_pred HHHHHHhcchhhhhH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHH
Confidence 999999999888885 99999999999999999999999999999888887666555 999999999999999999999
Q ss_pred HHHhcchhhhhcccc
Q 017954 168 KAVEKTEGWKFLQDH 182 (363)
Q Consensus 168 ~~v~~~e~f~~L~~~ 182 (363)
+.....|+|.++...
T Consensus 251 ~~al~~EGf~did~~ 265 (521)
T KOG2075|consen 251 EDALTPEGFCDIDST 265 (521)
T ss_pred HhhhCccceeehhhH
Confidence 999999999988743
No 9
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.80 E-value=1.5e-19 Score=157.21 Aligned_cols=190 Identities=19% Similarity=0.300 Sum_probs=151.8
Q ss_pred cchhHHhHhhccCC---CCEEEEecC--CeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeCCCCHHHHHHHHHhh
Q 017954 20 VTTLTKENAPAFYE---PDVQILTSG--GLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFL 94 (363)
Q Consensus 20 ~s~l~~dl~~L~~~---~DV~~~v~~--g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~~~L~fl 94 (363)
+|.+..-..+|++. +|++|.+++ ++.++|||.|||+||++++- .++..| ......++|.++++|...++||
T Consensus 50 ~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wkf--aN~~de--kse~~~~dDad~Ea~~t~iRWI 125 (280)
T KOG4591|consen 50 ISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKF--ANGGDE--KSEELDLDDADFEAFHTAIRWI 125 (280)
T ss_pred HHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhh--ccCCCc--chhhhcccccCHHHHHHhheee
Confidence 44444444566663 799999953 47899999999999999874 333223 3456788899999999999999
Q ss_pred hCCCcCccchHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcch
Q 017954 95 YTSRCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTE 174 (363)
Q Consensus 95 Yt~~~~~~~~~~~~~~Ll~lAd~y~v~~Lk~~ce~~L~~~l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~nf~~v~~~e 174 (363)
||+.++....++.+.++..+|+.|+++.|+..|+..+...++++||+.+|++|+..++..|...|...|+.+|..+ ..+
T Consensus 126 YTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL-~~a 204 (280)
T KOG4591|consen 126 YTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDL-GKA 204 (280)
T ss_pred eccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-ChH
Confidence 9999998766789999999999999999999999999999999999999999999999999999999999999987 667
Q ss_pred hhhhccccChHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHhhhh
Q 017954 175 GWKFLQDHDPWLELQILQFMDEAESRIKRTRRRRQEQGLYLQLSE 219 (363)
Q Consensus 175 ~f~~L~~~~p~l~~ell~~~~~~~~~~~~~~r~~~e~~vy~~l~~ 219 (363)
+|.+|+.. ++..++..-.+...++.- +-.+|+.+|+.+-+
T Consensus 205 ~FaqMs~a---LLYklId~kTe~~LHk~i--ki~REDVl~LYfie 244 (280)
T KOG4591|consen 205 DFAQMSAA---LLYKLIDGKTENPLHKAI--KIEREDVLFLYFIE 244 (280)
T ss_pred HHHhccHH---HHHHHHcCCCcchhHHhh--hccccceeeehhhh
Confidence 88888754 666666655444444332 23457777655544
No 10
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.72 E-value=4.8e-17 Score=131.97 Aligned_cols=100 Identities=29% Similarity=0.416 Sum_probs=85.9
Q ss_pred CCCEEEEecCCeEEeecHHHHHhccHHHHHhhcCC-CCCCCCCCeEEeCCCCHHHHHHHHHhhhCCCcCccchHHHHHHH
Q 017954 33 EPDVQILTSGGLRIPVHASILVSASPVLENIIDRP-RKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHL 111 (363)
Q Consensus 33 ~~DV~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~-~~e~s~~~~I~l~~v~~~~f~~~L~flYt~~~~~~~~~~~~~~L 111 (363)
.+|++|.+++|..|+|||.||+++|+||+.||.++ +.+ .....|.++++++++|..+++|+|++.+..+ ..+++.++
T Consensus 10 ~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~-~~~~~~~l 87 (111)
T PF00651_consen 10 FSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKE-STVPEISLPDVSPEAFEAFLEYMYTGEIEIN-SDENVEEL 87 (111)
T ss_dssp S--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTT-SSEEEEEETTSCHHHHHHHHHHHHHSEEEEE--TTTHHHH
T ss_pred CCCEEEEECCCEEEeechhhhhccchhhhhccccccccc-ccccccccccccccccccccccccCCcccCC-HHHHHHHH
Confidence 57999999448999999999999999999999998 444 3445789999999999999999999999887 13889999
Q ss_pred HHHHhhcCchhHHHHHHHHHHhc
Q 017954 112 LALSHVYSVPQLKQRCTKGLGER 134 (363)
Q Consensus 112 l~lAd~y~v~~Lk~~ce~~L~~~ 134 (363)
+.+|++|+++.|+..|+.+|.+.
T Consensus 88 l~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 88 LELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHhC
Confidence 99999999999999999998764
No 11
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.66 E-value=1.6e-16 Score=161.58 Aligned_cols=161 Identities=15% Similarity=0.232 Sum_probs=131.0
Q ss_pred CEEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeCCCCHHHHHHHHHhhhCC-CcCc---cchHHHHHH
Q 017954 35 DVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTS-RCTE---EEMEKYGIH 110 (363)
Q Consensus 35 DV~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~~~L~flYt~-~~~~---~~~~~~~~~ 110 (363)
|+.|+..||+.++||+++|++|++||..||..-+.|. +.-.+....+..+.+..+|+|+|+. .... ....++..+
T Consensus 712 d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~-sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~ 790 (1267)
T KOG0783|consen 712 DTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMES-SSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFE 790 (1267)
T ss_pred eEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhh-ccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhHH
Confidence 8888888999999999999999999999999988884 4433333344599999999999954 3321 112478999
Q ss_pred HHHHHhhcCchhHHHHHHHHHHhcCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcchhhhhccccChHHHHHH
Q 017954 111 LLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQI 190 (363)
Q Consensus 111 Ll~lAd~y~v~~Lk~~ce~~L~~~l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~nf~~v~~~e~f~~L~~~~p~l~~el 190 (363)
++..||.|.+.+|+.+|+..|...++..++..++++|..|++..|+..|++||..|+..++......++......-+.+.
T Consensus 791 il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~dg~~LK~l~~~ 870 (1267)
T KOG0783|consen 791 ILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEWDGFHLKKLAQR 870 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887665555554444444445
Q ss_pred HHHHHh
Q 017954 191 LQFMDE 196 (363)
Q Consensus 191 l~~~~~ 196 (363)
++.+..
T Consensus 871 yrkm~~ 876 (1267)
T KOG0783|consen 871 YRKMLS 876 (1267)
T ss_pred HHHHhh
Confidence 555444
No 12
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.65 E-value=8.9e-16 Score=118.25 Aligned_cols=90 Identities=26% Similarity=0.427 Sum_probs=82.2
Q ss_pred CEEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeCCCCHHHHHHHHHhhhCCCcCccchHHHHHHHHHH
Q 017954 35 DVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLAL 114 (363)
Q Consensus 35 DV~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~~~L~flYt~~~~~~~~~~~~~~Ll~l 114 (363)
||+|.+ +|+.|++||.+|+++|+||+.||.+++.+ +....+.+++.++++|+.+|+|+|++.+..+. .++.+++.+
T Consensus 1 dv~i~v-~~~~~~~h~~iL~~~s~~f~~~~~~~~~~-~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~--~~~~~l~~~ 76 (90)
T smart00225 1 DVTLVV-GGKKFKAHKAVLAACSPYFKALFSGDFKE-SKKSEIYLDDVSPEDFRALLEFLYTGKLDLPE--ENVEELLEL 76 (90)
T ss_pred CeEEEE-CCEEEehHHHHHhhcCHHHHHHHcCCCcc-CCCCEEEecCCCHHHHHHHHHeecCceeecCH--HHHHHHHHH
Confidence 789988 88999999999999999999999988765 35678999999999999999999999988875 689999999
Q ss_pred HhhcCchhHHHHHH
Q 017954 115 SHVYSVPQLKQRCT 128 (363)
Q Consensus 115 Ad~y~v~~Lk~~ce 128 (363)
|++|+++.|+..|+
T Consensus 77 a~~~~~~~l~~~c~ 90 (90)
T smart00225 77 ADYLQIPGLVELCE 90 (90)
T ss_pred HHHHCcHHHHhhhC
Confidence 99999999999884
No 13
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.59 E-value=4.8e-15 Score=141.08 Aligned_cols=160 Identities=16% Similarity=0.211 Sum_probs=140.0
Q ss_pred hhccC---CCCEEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeC----CCCHHHHHHHHHhhhCCCcC
Q 017954 28 APAFY---EPDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPIL----GVPCGAVSSFVGFLYTSRCT 100 (363)
Q Consensus 28 ~~L~~---~~DV~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~----~v~~~~f~~~L~flYt~~~~ 100 (363)
..||. ++||.+.+ =|.+.+.||.-| ..|+||++||.|.++| ++...|.++ .++.+++..++.-+|.+++.
T Consensus 61 q~lf~q~enSDv~l~a-lg~eWrlHk~yL-~QS~yf~smf~Gtw~e-s~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve 137 (488)
T KOG4682|consen 61 QNLFLQGENSDVILEA-LGFEWRLHKPYL-FQSEYFKSMFSGTWKE-SSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE 137 (488)
T ss_pred HHHHhcCCCcceehhh-ccceeeeeeeee-eccHHHHHHhccccCh-hhCceEEEEcCCCcccHHHHHHHHhhhhhhhee
Confidence 34554 58999998 899999999999 7899999999999988 577666653 68999999999999999999
Q ss_pred ccchHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcchhhhhcc
Q 017954 101 EEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQ 180 (363)
Q Consensus 101 ~~~~~~~~~~Ll~lAd~y~v~~Lk~~ce~~L~~~l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~nf~~v~~~e~f~~L~ 180 (363)
++. +.+..++++|..+++++|.+.|.+.+...|+++|++.+|..|..|+...+.+.|++++..|+-.+....-+.+++
T Consensus 138 I~l--~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~ 215 (488)
T KOG4682|consen 138 IKL--SDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEIS 215 (488)
T ss_pred ccH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcC
Confidence 985 889999999999999999999999999999999999999999999999999999999999999988777665665
Q ss_pred ccChHHHHHHHHHHHhhhh
Q 017954 181 DHDPWLELQILQFMDEAES 199 (363)
Q Consensus 181 ~~~p~l~~ell~~~~~~~~ 199 (363)
.+ ++..+..++.
T Consensus 216 ~~-------Lm~~ll~Spn 227 (488)
T KOG4682|consen 216 IN-------LMKQLLGSPN 227 (488)
T ss_pred HH-------HHHHHhCCCC
Confidence 44 5555555443
No 14
>PF02135 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. TAZ (Transcription Adaptor putative Zinc finger) domains are zinc-containing domains found in the homologous transcriptional co-activators CREB-binding protein (CBP) and the P300. CBP and P300 are histone acetyltransferases (2.3.1.48 from EC) that catalyse the reversible acetylation of all four histones in nucleosomes, acting to regulate transcription via chromatin remodelling. These large nuclear proteins interact with numerous transcription factors and viral oncoproteins, including p53 tumour suppressor protein, E1A oncoprotein, MyoD, and GATA-1, and are involved in cell growth, differentiation and apoptosis []. Both CBP and P300 have two copies of the TAZ domain, one in the N-terminal region, the other in the C-terminal region. The TAZ1 domain of CBP and P300 forms a complex with CITED2 (CBP/P300-interacting transactivator with ED-rich tail), inhibiting the activity of the hypoxia inducible factor (HIF-1alpha) and thereby attenuating the cellular response to low tissue oxygen concentration []. Adaptation to hypoxia is mediated by transactivation of hypoxia-responsive genes by hypoxia-inducible factor-1 (HIF-1) in complex with the CBP and p300 transcriptional coactivators []. The TAZ domain adopts an all-alpha fold with zinc-binding sites in the loops connecting the helices. The TAZ1 domain in P300 and the TAZ2 (CH3) domain in CBP have each been shown to have four amphipathic helices, organised by three zinc-binding clusters with HCCC-type coordination [, , ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003712 transcription cofactor activity, 0004402 histone acetyltransferase activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1P4Q_B 1L3E_B 2KJE_A 1WO3_A 1WO4_A 1WO5_A 1LIQ_A 3P57_P 2K8F_A 3IO2_A ....
Probab=99.22 E-value=9.1e-12 Score=94.55 Aligned_cols=72 Identities=36% Similarity=0.806 Sum_probs=62.4
Q ss_pred hhhhhHHHHHHHhhhcCCCCCCCcCCCCCCCCCCCCCcchhhhhHhhhhhccccccc--CCCChhhHHHHHHHHHHHhhc
Q 017954 216 QLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRV--NGGCLRCKRMWQLLRLHSSMC 293 (363)
Q Consensus 216 ~l~~~~~~l~h~~~~~~~~~~p~~~~~~~~~~~c~~~~~c~~l~~l~~H~~~c~~r~--~~gc~~c~r~~~l~~~h~~~c 293 (363)
++++.+.+|.|+.. |+..+ .+.|. ++.|.+||.|+.|+.+|..+. .++|..|+++|+ |++.|
T Consensus 2 ~~~~~L~~L~Ha~~--C~~~~---------~~~C~-~~~C~~~K~ll~H~~~C~~~~C~~~~C~~~k~ll~----H~~~C 65 (75)
T PF02135_consen 2 QLQRWLELLLHASS--CRDPE---------HPNCS-LPHCRKMKKLLKHMRTCRNRDCPVPGCQSCKRLLS----HARSC 65 (75)
T ss_dssp HHHHHHHHHHHHHH--HHHHH---------CTT-S-STTHHHHHHHHHHHCCSSSCCSSCCTHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHhH--CcCCC---------CCCCC-CcccHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH----HHhcC
Confidence 57888999999987 87321 27898 899999999999999999887 789999999999 99999
Q ss_pred CCCCCCcCCcc
Q 017954 294 EQSDSCRVPLC 304 (363)
Q Consensus 294 ~~~~~c~vp~c 304 (363)
.+++ |+||.|
T Consensus 66 ~~~~-C~vc~C 75 (75)
T PF02135_consen 66 KDSD-CPVCFC 75 (75)
T ss_dssp TSTT-SSSHHH
T ss_pred CCCC-CCCCCC
Confidence 9987 999987
No 15
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.78 E-value=2.9e-08 Score=94.51 Aligned_cols=133 Identities=12% Similarity=0.036 Sum_probs=110.7
Q ss_pred eEEeecHHHHHhccHHHHHhhcCCCCCCCCC---CeEEeCCCCHHHHHHHHHhhhCCCcCccchHHHHHHHHHHHhhcCc
Q 017954 44 LRIPVHASILVSASPVLENIIDRPRKHRSSE---KVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLALSHVYSV 120 (363)
Q Consensus 44 ~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~---~~I~l~~v~~~~f~~~L~flYt~~~~~~~~~~~~~~Ll~lAd~y~v 120 (363)
..++||..++ .|.+||+.||.|++.|.+.. ....+++....+++..++|+|++..++.. +.+.+++.+|+++.+
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~--~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIF--DVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchH--HHHhhHHHHhhHhhh
Confidence 3699999999 57789999999999884322 23456677889999999999999888774 889999999999876
Q ss_pred h---hHHHHHHHHHHhc---CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcchhhhhc
Q 017954 121 P---QLKQRCTKGLGER---LTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFL 179 (363)
Q Consensus 121 ~---~Lk~~ce~~L~~~---l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~nf~~v~~~e~f~~L 179 (363)
. .|+.++..-|.+. ++.-++.+++.++....+.+|...+..|++.|+..+...+++...
T Consensus 378 ~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~ 442 (516)
T KOG0511|consen 378 ADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSS 442 (516)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHH
Confidence 6 2667766666664 567789999999999999999999999999999999988888753
No 16
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.48 E-value=1.6e-07 Score=86.14 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=81.1
Q ss_pred hhHHhHhhccCC----CCEEEEecCCe--------------EEeecHHHHHhccHHHHHhhcCCCCCC--------CCCC
Q 017954 22 TLTKENAPAFYE----PDVQILTSGGL--------------RIPVHASILVSASPVLENIIDRPRKHR--------SSEK 75 (363)
Q Consensus 22 ~l~~dl~~L~~~----~DV~~~v~~g~--------------~~~aHk~ILaa~S~yF~~mf~~~~~e~--------s~~~ 75 (363)
.+..|+..||+. .|+.+.++||+ +++||++|.++||++|++++.....+. ....
T Consensus 221 kLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~Pk 300 (401)
T KOG2838|consen 221 KLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPK 300 (401)
T ss_pred hhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCc
Confidence 556677777762 57777776654 688999999999999999986542221 2234
Q ss_pred eEEeCC-CCHHHH-HHHHHhhhCCCcCccc--------------------------hHHHHHHHHHHHhhcCchhHHHHH
Q 017954 76 VIPILG-VPCGAV-SSFVGFLYTSRCTEEE--------------------------MEKYGIHLLALSHVYSVPQLKQRC 127 (363)
Q Consensus 76 ~I~l~~-v~~~~f-~~~L~flYt~~~~~~~--------------------------~~~~~~~Ll~lAd~y~v~~Lk~~c 127 (363)
.|.+.+ +=|.+| -.||.++||+.++.+. ....+++|+.+|-+|.+..|.+.|
T Consensus 301 RIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~ 380 (401)
T KOG2838|consen 301 RIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQAC 380 (401)
T ss_pred eeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566654 344444 4788999999876321 024566677777777777777777
Q ss_pred HHHHHhcCChhhHHHH
Q 017954 128 TKGLGERLTIDNVVDV 143 (363)
Q Consensus 128 e~~L~~~l~~~n~~~i 143 (363)
+..+......+++..+
T Consensus 381 e~Vir~acaadlsn~c 396 (401)
T KOG2838|consen 381 EDVIRKACAADLSNGC 396 (401)
T ss_pred HHHHHhhhhhhccccc
Confidence 7777666555554443
No 17
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.46 E-value=1.5e-07 Score=97.15 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=61.3
Q ss_pred cchhHHhHhhccCC-------CCEEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCC-----------CCCCCeEEeCC
Q 017954 20 VTTLTKENAPAFYE-------PDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKH-----------RSSEKVIPILG 81 (363)
Q Consensus 20 ~s~l~~dl~~L~~~-------~DV~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e-----------~s~~~~I~l~~ 81 (363)
.+.+...|..|+.. .||+|.| |++.|+|||.||++||++|+.+|-..... .+....|.+++
T Consensus 538 ss~fe~sf~kLl~e~~~~ds~hDVtf~v-g~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~ 616 (1267)
T KOG0783|consen 538 SSNFEGSFPKLLSEENYKDSFHDVTFYV-GTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVED 616 (1267)
T ss_pred cccchhhhHHHhhccccccccceEEEEe-cCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeecc
Confidence 34455566666663 3999999 89999999999999999999998654211 12234566889
Q ss_pred CCHHHHHHHHHhhhCCCc
Q 017954 82 VPCGAVSSFVGFLYTSRC 99 (363)
Q Consensus 82 v~~~~f~~~L~flYt~~~ 99 (363)
+++..|+.+|.||||+..
T Consensus 617 i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 617 IPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred CCHHHHHHHHHHHhcccc
Confidence 999999999999999843
No 18
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.09 E-value=3.4e-06 Score=80.46 Aligned_cols=144 Identities=21% Similarity=0.112 Sum_probs=115.9
Q ss_pred CeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeCCCCHHHHHHHHHhhhCCCcCccchHHHHH---HHHHHHhhcC
Q 017954 43 GLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGI---HLLALSHVYS 119 (363)
Q Consensus 43 g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~~~L~flYt~~~~~~~~~~~~~---~Ll~lAd~y~ 119 (363)
|..+.+|+.+++++|++|+.|+.....+ .....+.+.+.+++.++.+..|.|+..-.... +... .++..++.|+
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~-~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~--~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFK-ESSKLITLLEEKPEVLEALNGFQVLPSQVSSV--ERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccch-hccccccccccchhhHhhhceEEEeccchHHH--HHhhcCChhhhhccccc
Confidence 5579999999999999999999887544 23445688899999999999999996544331 3333 7888999999
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHHhcchhhhhccccChHHHHHH
Q 017954 120 VPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAAS--RFKAVEKTEGWKFLQDHDPWLELQI 190 (363)
Q Consensus 120 v~~Lk~~ce~~L~~~l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~--nf~~v~~~e~f~~L~~~~p~l~~el 190 (363)
.+.|+..|+..+...+...++...++.+..++...+...+..++.. ++..+....++...... +++..+.
T Consensus 186 ~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~~k~~-~~~~~~~ 257 (297)
T KOG1987|consen 186 NRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVKEKKK-KDLWYEI 257 (297)
T ss_pred cHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhhh-HHHHHHH
Confidence 9999999999999999999999999999999999999999999997 77777766666544443 3344333
No 19
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.09 E-value=2.6e-05 Score=71.08 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=83.7
Q ss_pred EEEEecCCeEEeecHHHHHhccHHHHHhhcCCCC-CCCCCCeEEeCCCCHHHHHHHHHhhhCCCcCccchHHHHHHHHHH
Q 017954 36 VQILTSGGLRIPVHASILVSASPVLENIIDRPRK-HRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLAL 114 (363)
Q Consensus 36 V~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~-e~s~~~~I~l~~v~~~~f~~~L~flYt~~~~~~~~~~~~~~Ll~l 114 (363)
|.+.| +|..|...+.-|.-...+|+.|+..... +...++.|-| |=+|.-|..+|.|+-.|....++....+.+|+.=
T Consensus 7 vkLnv-GG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~E 84 (230)
T KOG2716|consen 7 VKLNV-GGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKELLRE 84 (230)
T ss_pred EEEec-CCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHHHHH
Confidence 56788 8999999999999999999999998853 3233455666 6799999999999999888877767899999999
Q ss_pred HhhcCchhHHHHHHHHHHhc
Q 017954 115 SHVYSVPQLKQRCTKGLGER 134 (363)
Q Consensus 115 Ad~y~v~~Lk~~ce~~L~~~ 134 (363)
|.+|.++.|.+.|...+...
T Consensus 85 A~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 85 AEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHHhhHHHHHHHHHHHhhhc
Confidence 99999999999999987765
No 20
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.91 E-value=3.6e-05 Score=70.95 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=74.3
Q ss_pred CCcchhHHhHhhccC---CCCEEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCCCCCC--CeEEeCCCCHHHHHHHHH
Q 017954 18 SPVTTLTKENAPAFY---EPDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSE--KVIPILGVPCGAVSSFVG 92 (363)
Q Consensus 18 ~p~s~l~~dl~~L~~---~~DV~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~--~~I~l~~v~~~~f~~~L~ 92 (363)
.|..++..||.+.++ .+|+-|+. ....|+|||++|++|+|+|+...+..... ... -.|..-+++-++|+.||.
T Consensus 112 ~ea~sf~kD~ad~ye~k~c~dldiiF-keTcfpahRA~laaRCpffK~l~nsd~e~-~ae~i~dik~ag~dm~~feafLh 189 (401)
T KOG2838|consen 112 KEANSFLKDFADGYERKVCGDLDIIF-KETCFPAHRAFLAARCPFFKILANSDEEP-EAEDICDIKFAGFDMDAFEAFLH 189 (401)
T ss_pred cchhHHHHHHhhhhheeeeccceeee-eeccchHHHHHHHhhCcchhhhccCCCCc-chhhhhhhhhhccChHHHHHHHH
Confidence 344578889998877 36777777 55789999999999999999988765221 122 235556899999999999
Q ss_pred hhhCCCcCccch-HHHHHHHHHHHhhcCchh
Q 017954 93 FLYTSRCTEEEM-EKYGIHLLALSHVYSVPQ 122 (363)
Q Consensus 93 flYt~~~~~~~~-~~~~~~Ll~lAd~y~v~~ 122 (363)
|+|||....++. .+++.-|-.++.-|+.+.
T Consensus 190 ~l~tgEfgmEd~~fqn~diL~QL~edFG~~k 220 (401)
T KOG2838|consen 190 SLITGEFGMEDLGFQNSDILEQLCEDFGCFK 220 (401)
T ss_pred HHHhcccchhhcCCchHHHHHHHHHhhCCch
Confidence 999998865532 244555555666666554
No 21
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.87 E-value=9.3e-05 Score=57.66 Aligned_cols=83 Identities=12% Similarity=0.238 Sum_probs=64.8
Q ss_pred EEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCCC-CCCCeEEeCCCCHHHHHHHHHhh-----hCCC-cC---ccchH
Q 017954 36 VQILTSGGLRIPVHASILVSASPVLENIIDRPRKHR-SSEKVIPILGVPCGAVSSFVGFL-----YTSR-CT---EEEME 105 (363)
Q Consensus 36 V~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~-s~~~~I~l~~v~~~~f~~~L~fl-----Yt~~-~~---~~~~~ 105 (363)
|+++.+||.+|-.-|.+ |.-|+-.++||.|+.... +..++|.+.+++..+++.+.+|+ |++. .. ++...
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp 97 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP 97 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence 67777788888888876 688999999999884331 45678999999999999999998 5554 11 12224
Q ss_pred HHHHHHHHHHhhcC
Q 017954 106 KYGIHLLALSHVYS 119 (363)
Q Consensus 106 ~~~~~Ll~lAd~y~ 119 (363)
+.+++||.+|+++.
T Consensus 98 emaleLL~aAn~Le 111 (112)
T KOG3473|consen 98 EMALELLMAANYLE 111 (112)
T ss_pred HHHHHHHHHhhhhc
Confidence 89999999999875
No 22
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.67 E-value=0.00029 Score=56.64 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=50.6
Q ss_pred CEEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeCCCCHHHHHHHHHhhhCC
Q 017954 35 DVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTS 97 (363)
Q Consensus 35 DV~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~~~L~flYt~ 97 (363)
.|+++..||..|.+.+.+. ..|..++.|+.+...+......|.+++++..+++.+++|++..
T Consensus 3 ~v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h 64 (104)
T smart00512 3 YIKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHH 64 (104)
T ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHc
Confidence 4788888999999999986 7999999999765332222357999999999999999999753
No 23
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.45 E-value=0.00032 Score=55.59 Aligned_cols=43 Identities=21% Similarity=0.365 Sum_probs=39.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcchhhhhcccc
Q 017954 140 VVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDH 182 (363)
Q Consensus 140 ~~~il~lA~~~~~~~L~~~c~~~i~~nf~~v~~~e~f~~L~~~ 182 (363)
|++++.+|..|+...|...|.+||..||.++..+++|..|+.+
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~ 43 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFD 43 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHH
Confidence 6889999999999999999999999999999999999999866
No 24
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.36 E-value=0.00028 Score=67.09 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=70.3
Q ss_pred eEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeC-CCCHHHHHHHHHhhhCCCcCccchHHHHHHHHHHHhhcCchh
Q 017954 44 LRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPIL-GVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQ 122 (363)
Q Consensus 44 ~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~-~v~~~~f~~~L~flYt~~~~~~~~~~~~~~Ll~lAd~y~v~~ 122 (363)
+.|.+.+.+|...-.||+..+.....+......|+|. .-+-.+|+-+++|+......++. +++..++.-|++++|++
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~--~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTP--SNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCc--CcEEEeEehhhhhccHH
Confidence 6799999999999999999996522222223345654 56789999999999996666664 88999999999999999
Q ss_pred HHHHHHHHHHhc
Q 017954 123 LKQRCTKGLGER 134 (363)
Q Consensus 123 Lk~~ce~~L~~~ 134 (363)
|.+.|..|+..+
T Consensus 92 Lve~cl~y~~~~ 103 (317)
T PF11822_consen 92 LVEECLQYCHDH 103 (317)
T ss_pred HHHHHHHHHHHh
Confidence 999998888654
No 25
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=97.29 E-value=0.0015 Score=47.39 Aligned_cols=57 Identities=16% Similarity=0.299 Sum_probs=47.7
Q ss_pred EEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeCCCCHHHHHHHHHhhhC
Q 017954 36 VQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYT 96 (363)
Q Consensus 36 V~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~~~L~flYt 96 (363)
|+|+.+||+.|.+.+.+. ..|..++.|+.+...+. . .|.+++++..++..+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~-~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDED-E--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCG-T--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhcccc-c--ccccCccCHHHHHHHHHHHHh
Confidence 678888999999999986 79999999998753332 2 799999999999999999874
No 26
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.24 E-value=0.00022 Score=56.08 Aligned_cols=89 Identities=17% Similarity=0.217 Sum_probs=64.3
Q ss_pred EEEEecCCeEEeecHHHHH-hccHHHHHhhcCC-C-CCCCCCCeEEeCCCCHHHHHHHHHhhhC-CCcCccchHHHHHHH
Q 017954 36 VQILTSGGLRIPVHASILV-SASPVLENIIDRP-R-KHRSSEKVIPILGVPCGAVSSFVGFLYT-SRCTEEEMEKYGIHL 111 (363)
Q Consensus 36 V~~~v~~g~~~~aHk~ILa-a~S~yF~~mf~~~-~-~e~s~~~~I~l~~v~~~~f~~~L~flYt-~~~~~~~~~~~~~~L 111 (363)
|+|.| +|+.|.+-+..|. ....+|..|+.+. . ........+-| |=+++.|+.+|+|+.+ +.++... ......+
T Consensus 1 V~lNV-GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~-~~~~~~l 77 (94)
T PF02214_consen 1 VRLNV-GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPD-EICLEEL 77 (94)
T ss_dssp EEEEE-TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---T-TS-HHHH
T ss_pred CEEEE-CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCC-chhHHHH
Confidence 68899 9999999999998 4556899999864 1 11123455666 6799999999999999 6666542 3567889
Q ss_pred HHHHhhcCchhH-HHHH
Q 017954 112 LALSHVYSVPQL-KQRC 127 (363)
Q Consensus 112 l~lAd~y~v~~L-k~~c 127 (363)
+.-|.+|+++.| .+.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999998 5544
No 27
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=96.98 E-value=0.002 Score=50.50 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=39.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcchhhhhcccc
Q 017954 140 VVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDH 182 (363)
Q Consensus 140 ~~~il~lA~~~~~~~L~~~c~~~i~~nf~~v~~~e~f~~L~~~ 182 (363)
|++++.+|..|+.+.|.+.|.+||..||..+.++++|..|+..
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~ 43 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLE 43 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHH
Confidence 4678899999999999999999999999999999999988755
No 28
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.013 Score=50.80 Aligned_cols=99 Identities=11% Similarity=0.146 Sum_probs=72.1
Q ss_pred EEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeCCCCHHHHHHHHHhhhCCCcCc--------------
Q 017954 36 VQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTE-------------- 101 (363)
Q Consensus 36 V~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~~~L~flYt~~~~~-------------- 101 (363)
+.+..+||+.|.+-..+. ..|..+.+++....-. .....|+|+++...+|..+|.|+|...-+.
T Consensus 7 ikL~SsDG~~f~ve~~~a-~~s~~i~~~~~~~~~~-~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~ 84 (162)
T KOG1724|consen 7 IKLESSDGEIFEVEEEVA-RQSQTISAHMIEDGCA-DENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETD 84 (162)
T ss_pred EEEEccCCceeehhHHHH-HHhHHHHHHHHHcCCC-ccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCC
Confidence 556667999999998875 7889988888654211 111469999999999999999998743210
Q ss_pred -cc--------hHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCC
Q 017954 102 -EE--------MEKYGIHLLALSHVYSVPQLKQRCTKGLGERLT 136 (363)
Q Consensus 102 -~~--------~~~~~~~Ll~lAd~y~v~~Lk~~ce~~L~~~l~ 136 (363)
.. ....+.+|+.+|+++++++|..+|...+...+.
T Consensus 85 i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mik 128 (162)
T KOG1724|consen 85 IPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIK 128 (162)
T ss_pred ccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHc
Confidence 00 024788888888888888888888877766543
No 29
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.30 E-value=0.0051 Score=59.43 Aligned_cols=88 Identities=20% Similarity=0.124 Sum_probs=63.5
Q ss_pred CCEEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeCCCCHHHHHHHHHhhhCCCcCccchHHHHHHHHH
Q 017954 34 PDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLA 113 (363)
Q Consensus 34 ~DV~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~~~L~flYt~~~~~~~~~~~~~~Ll~ 113 (363)
.|++|...+|+.|.||+..|++||.+|..-+..-+ .....|+-..+-+.+|..|++|+|-..-.+. .+..-.|+.
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~---~~~heI~~~~v~~~~f~~flk~lyl~~na~~--~~qynalls 224 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY---VQGHEIEAHRVILSAFSPFLKQLYLNTNAEW--KDQYNALLS 224 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCchhhhhc---cccCchhhhhhhHhhhhHHHHHHHHhhhhhh--hhHHHHHHh
Confidence 49999988899999999999999988865433221 1233455556778999999999998732222 234477888
Q ss_pred HHhhcCchhHHHH
Q 017954 114 LSHVYSVPQLKQR 126 (363)
Q Consensus 114 lAd~y~v~~Lk~~ 126 (363)
+..+|+++.|...
T Consensus 225 i~~kF~~e~l~~~ 237 (516)
T KOG0511|consen 225 IEVKFSKEKLSLE 237 (516)
T ss_pred hhhhccHHHhHHH
Confidence 8888887776544
No 30
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.13 Score=42.44 Aligned_cols=99 Identities=12% Similarity=0.131 Sum_probs=69.9
Q ss_pred CEEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeCCCCHHHHHHHHHhhhCCCcC--cc----------
Q 017954 35 DVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCT--EE---------- 102 (363)
Q Consensus 35 DV~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~~~L~flYt~~~~--~~---------- 102 (363)
-|.+..+||..|.+.+.+ |-+|-..++|+.... ...-.|..+++...+|..+++|+-...-. .+
T Consensus 3 ~i~l~s~dge~F~vd~~i-AerSiLikN~l~d~~---~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~ 78 (158)
T COG5201 3 MIELESIDGEIFRVDENI-AERSILIKNMLCDST---ACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSK 78 (158)
T ss_pred ceEEEecCCcEEEehHHH-HHHHHHHHHHhcccc---ccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccC
Confidence 467777799999999876 789999999987542 22334778899999999999998543221 11
Q ss_pred ---c--------hHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCh
Q 017954 103 ---E--------MEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTI 137 (363)
Q Consensus 103 ---~--------~~~~~~~Ll~lAd~y~v~~Lk~~ce~~L~~~l~~ 137 (363)
. ..+.+.++..+|+++.++.|.+.|...+...+..
T Consensus 79 p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirg 124 (158)
T COG5201 79 PSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRG 124 (158)
T ss_pred CccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHcc
Confidence 0 0256777777788888888887777666554443
No 31
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=94.99 E-value=0.094 Score=51.73 Aligned_cols=88 Identities=13% Similarity=0.078 Sum_probs=64.6
Q ss_pred EEEEecCCeEEeecHHHHHhcc--HHHHHhhcCCCCCCCCCCeEEeCCCCHHHHHHHHHhhhCCCcCccchHHHHHHHHH
Q 017954 36 VQILTSGGLRIPVHASILVSAS--PVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLA 113 (363)
Q Consensus 36 V~~~v~~g~~~~aHk~ILaa~S--~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~~~L~flYt~~~~~~~~~~~~~~Ll~ 113 (363)
|.|.| +|+.|.-.+.-|+..- .+|.+++.+.+.......-..+-|=+|+.|..+|+|+-|+.++... ......++.
T Consensus 13 V~lNV-GGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g-~~~~~llhd 90 (465)
T KOG2714|consen 13 VKLNV-GGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASG-VFPERLLHD 90 (465)
T ss_pred EEEec-CceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCcc-Cchhhhhhh
Confidence 66888 8999998888886544 6999999876543222222333477999999999999999999854 122333444
Q ss_pred HHhhcCchhHHH
Q 017954 114 LSHVYSVPQLKQ 125 (363)
Q Consensus 114 lAd~y~v~~Lk~ 125 (363)
-|.+|++..|.+
T Consensus 91 EA~fYGl~~llr 102 (465)
T KOG2714|consen 91 EAMFYGLTPLLR 102 (465)
T ss_pred hhhhcCcHHHHH
Confidence 899999999887
No 32
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=94.76 E-value=0.093 Score=47.52 Aligned_cols=92 Identities=12% Similarity=0.165 Sum_probs=69.1
Q ss_pred CEEEEecCCeEEeecHHHHHhcc--HHHHHhhcCC--CCCCCCCCeEEeCCCCHHHHHHHHHhhhCCCcCccchHHHHHH
Q 017954 35 DVQILTSGGLRIPVHASILVSAS--PVLENIIDRP--RKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIH 110 (363)
Q Consensus 35 DV~~~v~~g~~~~aHk~ILaa~S--~yF~~mf~~~--~~e~s~~~~I~l~~v~~~~f~~~L~flYt~~~~~~~~~~~~~~ 110 (363)
=|.+.+ +|+.|.--..-|..+- ..+.+||.+. +-+++...-+-| |-++.-|+.+|.|+-.|.++... .-++..
T Consensus 10 ~vrlni-gGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DRsp~yFepIlNyLr~Gq~~~~s-~i~~lg 86 (302)
T KOG1665|consen 10 MVRLNI-GGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DRSPKYFEPILNYLRDGQIPSLS-DIDCLG 86 (302)
T ss_pred hheeec-CCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-ccCchhhHHHHHHHhcCceeecC-CccHHH
Confidence 366777 7877776555555543 3677888765 223234444555 77999999999999999998664 357999
Q ss_pred HHHHHhhcCchhHHHHHHH
Q 017954 111 LLALSHVYSVPQLKQRCTK 129 (363)
Q Consensus 111 Ll~lAd~y~v~~Lk~~ce~ 129 (363)
++..|++|++-+|++..++
T Consensus 87 vLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 87 VLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHhhHHhhHhHHhHHhh
Confidence 9999999999999998887
No 33
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=88.96 E-value=2.4 Score=36.92 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=69.1
Q ss_pred EEEEecCCeEEeecHHHHHhccHHHHHhh-cCCCCCC--CCCCeEEeCCCCHHHHHHHHHhhhCCCcCccchHHHHHHHH
Q 017954 36 VQILTSGGLRIPVHASILVSASPVLENII-DRPRKHR--SSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLL 112 (363)
Q Consensus 36 V~~~v~~g~~~~aHk~ILaa~S~yF~~mf-~~~~~e~--s~~~~I~l~~v~~~~f~~~L~flYt~~~~~~~~~~~~~~Ll 112 (363)
|.+.| +|..|.--|.-|..-+.-|-.-| .....-. ....--.+-|=+|.-|..+|.|+-.|++.++. -.-..+|
T Consensus 23 VRlNV-GGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~--l~eeGvL 99 (210)
T KOG2715|consen 23 VRLNV-GGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK--LSEEGVL 99 (210)
T ss_pred EEEec-CCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh--hhhhccc
Confidence 67788 88899999999988775554444 3331110 01111334467899999999999999988775 3345678
Q ss_pred HHHhhcCchhHHHHHHHHHHhc
Q 017954 113 ALSHVYSVPQLKQRCTKGLGER 134 (363)
Q Consensus 113 ~lAd~y~v~~Lk~~ce~~L~~~ 134 (363)
.-|++|.+++|..+..+.|...
T Consensus 100 ~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 100 EEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred hhhhccCChHHHHHHHHHHHHH
Confidence 8899999999999988887765
No 34
>PF02135 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. TAZ (Transcription Adaptor putative Zinc finger) domains are zinc-containing domains found in the homologous transcriptional co-activators CREB-binding protein (CBP) and the P300. CBP and P300 are histone acetyltransferases (2.3.1.48 from EC) that catalyse the reversible acetylation of all four histones in nucleosomes, acting to regulate transcription via chromatin remodelling. These large nuclear proteins interact with numerous transcription factors and viral oncoproteins, including p53 tumour suppressor protein, E1A oncoprotein, MyoD, and GATA-1, and are involved in cell growth, differentiation and apoptosis []. Both CBP and P300 have two copies of the TAZ domain, one in the N-terminal region, the other in the C-terminal region. The TAZ1 domain of CBP and P300 forms a complex with CITED2 (CBP/P300-interacting transactivator with ED-rich tail), inhibiting the activity of the hypoxia inducible factor (HIF-1alpha) and thereby attenuating the cellular response to low tissue oxygen concentration []. Adaptation to hypoxia is mediated by transactivation of hypoxia-responsive genes by hypoxia-inducible factor-1 (HIF-1) in complex with the CBP and p300 transcriptional coactivators []. The TAZ domain adopts an all-alpha fold with zinc-binding sites in the loops connecting the helices. The TAZ1 domain in P300 and the TAZ2 (CH3) domain in CBP have each been shown to have four amphipathic helices, organised by three zinc-binding clusters with HCCC-type coordination [, , ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003712 transcription cofactor activity, 0004402 histone acetyltransferase activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1P4Q_B 1L3E_B 2KJE_A 1WO3_A 1WO4_A 1WO5_A 1LIQ_A 3P57_P 2K8F_A 3IO2_A ....
Probab=87.75 E-value=0.84 Score=34.19 Aligned_cols=53 Identities=28% Similarity=0.597 Sum_probs=37.4
Q ss_pred hhHhhhhhcccccccCCCC--hhhHHHHHHHHHHHhhcCCCCCCcCCcchHhHHHHh
Q 017954 258 LQLLIRHFATCKKRVNGGC--LRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLKAQ 312 (363)
Q Consensus 258 l~~l~~H~~~c~~r~~~gc--~~c~r~~~l~~~h~~~c~~~~~c~vp~c~~~k~~~~ 312 (363)
.-.++.|...|..+..+.| +.|..|-.| -.|...|...+ |.+|.|..-|.-+.
T Consensus 6 ~L~~L~Ha~~C~~~~~~~C~~~~C~~~K~l-l~H~~~C~~~~-C~~~~C~~~k~ll~ 60 (75)
T PF02135_consen 6 WLELLLHASSCRDPEHPNCSLPHCRKMKKL-LKHMRTCRNRD-CPVPGCQSCKRLLS 60 (75)
T ss_dssp HHHHHHHHHHHHHHHCTT-SSTTHHHHHHH-HHHHCCSSSCC-SSCCTHHHHHHHHH
T ss_pred HHHHHHHHhHCcCCCCCCCCCcccHHHHHH-HHHHHHcCCCC-CCCCCCHHHHHHHH
Confidence 4457788888876544667 478888655 46888998877 88998876665443
No 35
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=83.56 E-value=2.1 Score=32.35 Aligned_cols=43 Identities=12% Similarity=0.206 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHhcCC---hhhHHHHHHHHH
Q 017954 106 KYGIHLLALSHVYSVPQLKQRCTKGLGERLT---IDNVVDVLQLAR 148 (363)
Q Consensus 106 ~~~~~Ll~lAd~y~v~~Lk~~ce~~L~~~l~---~~n~~~il~lA~ 148 (363)
+.+.+|+.+|++++++.|...|...+...+. ++.+..++.+..
T Consensus 14 ~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~ 59 (78)
T PF01466_consen 14 DELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIEN 59 (78)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCC
Confidence 6799999999999999999999988877654 444444444443
No 36
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=77.91 E-value=4.7 Score=40.73 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=46.4
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcchhhhhccc-----cChHHHHHHHHHHH
Q 017954 135 LTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQD-----HDPWLELQILQFMD 195 (363)
Q Consensus 135 l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~nf~~v~~~e~f~~L~~-----~~p~l~~ell~~~~ 195 (363)
+..+|++.++..|..|..+.|...|.+||..|. +...+|..|.+ +.|+++.-+++.+.
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l---~~~naf~~L~q~A~lf~ep~Li~~c~e~id 247 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLRKNL---MADNAFLELFQRAKLFDEPSLISICLEVID 247 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---CChHHHHHHHHHHHhhcCHHHHHHHHHHhh
Confidence 678999999999999999999999999999874 34456666665 56777777766543
No 37
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=76.40 E-value=3.1 Score=40.02 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcch-hhhhccccChHHHHHHHHHHHhhh
Q 017954 121 PQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTE-GWKFLQDHDPWLELQILQFMDEAE 198 (363)
Q Consensus 121 ~~Lk~~ce~~L~~~l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~nf~~v~~~e-~f~~L~~~~p~l~~ell~~~~~~~ 198 (363)
+.|+..+.. -...++++||+.|+--+.....+.|.+.|+.|+..|+.+|+.++ ++.-|+.+ ++.-|...+...+
T Consensus 59 ~WLm~yv~~-~~p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~---Ll~RLa~~~t~~e 133 (317)
T PF11822_consen 59 EWLMRYVKG-EPPSLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDN---LLTRLADMFTHEE 133 (317)
T ss_pred HHHHHHhhc-CCCcCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHH---HHHHHHHhcCccc
Confidence 344444443 12248999999999999999999999999999999999998765 34444443 5555544443333
No 38
>smart00551 ZnF_TAZ TAZ zinc finger, present in p300 and CBP.
Probab=76.04 E-value=3.8 Score=31.18 Aligned_cols=51 Identities=33% Similarity=0.595 Sum_probs=34.3
Q ss_pred hhHhhhhhcccccccCCCC--hhhHHHHHHHHHHHhhcCCCCCCcCCcchHhHHHH
Q 017954 258 LQLLIRHFATCKKRVNGGC--LRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLKA 311 (363)
Q Consensus 258 l~~l~~H~~~c~~r~~~gc--~~c~r~~~l~~~h~~~c~~~~~c~vp~c~~~k~~~ 311 (363)
.-.++.|..+|..+. +.| +.|..|-.|++ |-..|...+ |..|-|..=|.-+
T Consensus 10 ~l~~L~Ha~~C~~~~-~~C~~~~C~~~k~L~~-H~~~C~~~~-C~~~~C~~ck~~~ 62 (79)
T smart00551 10 WLELLVHARRCKARE-AKCQYPNCKTMKKLLR-HMDSCKVRK-CKYGYCASCKQLW 62 (79)
T ss_pred HHHHHHHHHhCCCCC-CCCCCchhHHHHHHHH-HHHHcCCCC-CCCCCCHHHHHHH
Confidence 345677888886643 456 67877766654 788888864 8888886555443
No 39
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=72.32 E-value=11 Score=34.40 Aligned_cols=91 Identities=13% Similarity=0.020 Sum_probs=57.9
Q ss_pred EEEEecCCeEEeecHH--HHHhccHHHHHhhcCCCC-CCCCCCeEEeCCCCHHHHHHHHHhhhCCCcCccchHHHHHHHH
Q 017954 36 VQILTSGGLRIPVHAS--ILVSASPVLENIIDRPRK-HRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLL 112 (363)
Q Consensus 36 V~~~v~~g~~~~aHk~--ILaa~S~yF~~mf~~~~~-e~s~~~~I~l~~v~~~~f~~~L~flYt~~~~~~~~~~~~~~Ll 112 (363)
|.+.| +|. ++.|+. +..-.-..+.+||++... ..+......| |=+-..|+.+|.|+-+......+....+..|+
T Consensus 11 v~lnv-GG~-~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~ 87 (221)
T KOG2723|consen 11 VELNV-GGA-IYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVERLV 87 (221)
T ss_pred eeecc-CCe-EEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHHHHH
Confidence 45566 664 444432 223333456677765321 1122333444 45678999999999996666665457789999
Q ss_pred HHHhhcCchhHHHHHHH
Q 017954 113 ALSHVYSVPQLKQRCTK 129 (363)
Q Consensus 113 ~lAd~y~v~~Lk~~ce~ 129 (363)
..|++|+++.+.....+
T Consensus 88 rEA~f~~l~~~~~~l~~ 104 (221)
T KOG2723|consen 88 REAEFFQLEAPVTYLLN 104 (221)
T ss_pred HHHHHHccccHHHHHhc
Confidence 99999999987765544
No 40
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=62.25 E-value=14 Score=28.87 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 017954 137 IDNVVDVLQLARLCDAPDLYLRCMKLAASR 166 (363)
Q Consensus 137 ~~n~~~il~lA~~~~~~~L~~~c~~~i~~n 166 (363)
.+++.+++.+|..++.+.|...|.+++.+|
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 789999999999999999999999999876
No 41
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=61.81 E-value=11 Score=36.11 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=54.7
Q ss_pred CEEEEecCCeEEeecHHHHHhcc-HHHHHhhcCCC--CCCCCCCeEEe-CCCCHHHHHHHHHhhhCCCcCccchHHHHHH
Q 017954 35 DVQILTSGGLRIPVHASILVSAS-PVLENIIDRPR--KHRSSEKVIPI-LGVPCGAVSSFVGFLYTSRCTEEEMEKYGIH 110 (363)
Q Consensus 35 DV~~~v~~g~~~~aHk~ILaa~S-~yF~~mf~~~~--~e~s~~~~I~l-~~v~~~~f~~~L~flYt~~~~~~~~~~~~~~ 110 (363)
-++..+ ++..|.+-+.+|.+.- ...-.||.+++ ...+...+.++ ++++..+|+++|+|.-+|.+.-.+ .-.+.+
T Consensus 97 ~~t~lv-d~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~-~vSvpE 174 (438)
T KOG3840|consen 97 KVCLLV-DQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPS-SVSVSE 174 (438)
T ss_pred ceEEEe-eeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCC-CCchHH
Confidence 466777 8888888888885432 23445666552 11122334555 479999999999999999776543 234666
Q ss_pred HHHHHhhcCch
Q 017954 111 LLALSHVYSVP 121 (363)
Q Consensus 111 Ll~lAd~y~v~ 121 (363)
|-.+.|++.|+
T Consensus 175 LrEACDYLlip 185 (438)
T KOG3840|consen 175 LREACDYLLVP 185 (438)
T ss_pred HHhhcceEEee
Confidence 66666666554
No 42
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=55.63 E-value=23 Score=27.26 Aligned_cols=26 Identities=15% Similarity=0.475 Sum_probs=22.8
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHhc
Q 017954 109 IHLLALSHVYSVPQLKQRCTKGLGER 134 (363)
Q Consensus 109 ~~Ll~lAd~y~v~~Lk~~ce~~L~~~ 134 (363)
.+++.+|+.|+.+.|...|.+++..+
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~n 27 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKN 27 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHH
Confidence 57899999999999999999999875
No 43
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=52.97 E-value=67 Score=30.15 Aligned_cols=64 Identities=13% Similarity=0.184 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHhhhCCCcCccchHHHHHHHHHHHhhcCchh-HHHHHHHHHHhcCChhhHHHHHHHH
Q 017954 82 VPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQ-LKQRCTKGLGERLTIDNVVDVLQLA 147 (363)
Q Consensus 82 v~~~~f~~~L~flYt~~~~~~~~~~~~~~Ll~lAd~y~v~~-Lk~~ce~~L~~~l~~~n~~~il~lA 147 (363)
.....++.++.-+...+-.++ -.+++.||..|..++... .+...|..+...++..++-+++.-+
T Consensus 68 ~~r~llEtiV~lLP~e~~svs--c~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~ 132 (258)
T PF03000_consen 68 EQRELLETIVSLLPPEKGSVS--CSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS 132 (258)
T ss_pred HHHHHHHHHHHhCCCCCCccc--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC
Confidence 355678888888887665555 489999999999998765 4455666666677777777777655
No 44
>PHA03098 kelch-like protein; Provisional
Probab=35.16 E-value=64 Score=33.16 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=30.6
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 017954 135 LTIDNVVDVLQLARLCDAPDLYLRCMKLAASRF 167 (363)
Q Consensus 135 l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~nf 167 (363)
++.+|+.+++..|..+..+.|...|.+|+..++
T Consensus 73 i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l 105 (534)
T PHA03098 73 ITSNNVKDILSIANYLIIDFLINLCINYIIKII 105 (534)
T ss_pred EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 788999999999999999999999999999753
No 45
>PHA02713 hypothetical protein; Provisional
Probab=31.62 E-value=79 Score=33.01 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=31.3
Q ss_pred cCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 017954 134 RLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRF 167 (363)
Q Consensus 134 ~l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~nf 167 (363)
.++.+|+.+++..|..+..+.|.+.|.+|+..++
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l 123 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIKDYT 123 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence 3889999999999999999999999999999654
No 46
>TIGR02425 decarb_PcaC 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus.
Probab=31.16 E-value=3e+02 Score=22.59 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=55.2
Q ss_pred EeCCCCHHHHHHHHHhhhCCCcCcc---chHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCChhhHHHHHHHHHHC-CCH
Q 017954 78 PILGVPCGAVSSFVGFLYTSRCTEE---EMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLC-DAP 153 (363)
Q Consensus 78 ~l~~v~~~~f~~~L~flYt~~~~~~---~~~~~~~~Ll~lAd~y~v~~Lk~~ce~~L~~~l~~~n~~~il~lA~~~-~~~ 153 (363)
.+.+++|+..+.+.+|.|.+-+..+ .....+..|-.++-.-..+.|+......|...++++.+.+++..+..| +.+
T Consensus 27 ~~~~~~p~~~~~~~~~~fgdv~~r~~Ld~k~R~Litla~laa~g~~~~l~~h~~~Al~~G~T~~ei~Evl~q~~~y~G~P 106 (123)
T TIGR02425 27 ATTDFDQPFQELITEYAWGTVWTRPGLTKRERSLVTIALLAALGRDEELAMHVRATANTGVTEDDIKEVLLHVAIYAGVP 106 (123)
T ss_pred cccccCHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH
Confidence 3567889988999999988655433 223445555555555566788888888888899999988876665554 555
Q ss_pred HHHH
Q 017954 154 DLYL 157 (363)
Q Consensus 154 ~L~~ 157 (363)
....
T Consensus 107 ~a~~ 110 (123)
T TIGR02425 107 AANH 110 (123)
T ss_pred HHHH
Confidence 4433
No 47
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=27.78 E-value=1.7e+02 Score=23.17 Aligned_cols=59 Identities=12% Similarity=0.224 Sum_probs=42.5
Q ss_pred CCCEEEEecC-CeEEeecHHHHHhccHHHHHhhcCCCCCC--CCCCeEEeCCCCHHHHHHHHHhh
Q 017954 33 EPDVQILTSG-GLRIPVHASILVSASPVLENIIDRPRKHR--SSEKVIPILGVPCGAVSSFVGFL 94 (363)
Q Consensus 33 ~~DV~~~v~~-g~~~~aHk~ILaa~S~yF~~mf~~~~~e~--s~~~~I~l~~v~~~~f~~~L~fl 94 (363)
.+-+.+.||+ .+.|-+....| ..|.|+.++...-.|- ...+.|.|+ .+...|+.+|..|
T Consensus 38 ~G~~~VyVG~~~~Rfvvp~~~L--~hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 38 KGHFAVYVGEERRRFVVPVSYL--NHPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred CCeEEEEeCccceEEEechHHc--CchhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 3567888865 57888998888 5789999997653321 234567775 6788888888765
No 48
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=26.67 E-value=42 Score=25.42 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=14.2
Q ss_pred CCChhhHHHHHHHHHHH
Q 017954 274 GGCLRCKRMWQLLRLHS 290 (363)
Q Consensus 274 ~gc~~c~r~~~l~~~h~ 290 (363)
-+|+.|++.+++|.-+.
T Consensus 8 ~~Cp~C~~ak~~L~~~~ 24 (86)
T TIGR02183 8 PGCPYCVRAKQLAEKLA 24 (86)
T ss_pred CCCccHHHHHHHHHHhC
Confidence 48999999999987653
No 49
>PHA02790 Kelch-like protein; Provisional
Probab=25.99 E-value=81 Score=32.19 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=30.2
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 017954 135 LTIDNVVDVLQLARLCDAPDLYLRCMKLAASR 166 (363)
Q Consensus 135 l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~n 166 (363)
++.+|+.+++..|.....+.+.+.|.+|+..+
T Consensus 88 it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~ 119 (480)
T PHA02790 88 IDSHNVVNLLRASILTSVEFIIYTCINFILRD 119 (480)
T ss_pred EecccHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999964
No 50
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=25.83 E-value=1.4e+02 Score=22.18 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=28.0
Q ss_pred cCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 017954 134 RLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRF 167 (363)
Q Consensus 134 ~l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~nf 167 (363)
.++.+..++++..|...+...|.+.|.++|+..+
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i 43 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMI 43 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHh
Confidence 5677889999999999999999999999998754
No 51
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=22.59 E-value=96 Score=23.27 Aligned_cols=26 Identities=8% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHhc
Q 017954 109 IHLLALSHVYSVPQLKQRCTKGLGER 134 (363)
Q Consensus 109 ~~Ll~lAd~y~v~~Lk~~ce~~L~~~ 134 (363)
.+++.+|+.|+.+.|...|..++..+
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 35778899999999999999998764
No 52
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=20.32 E-value=75 Score=21.85 Aligned_cols=14 Identities=36% Similarity=0.786 Sum_probs=12.1
Q ss_pred CCChhhHHHHHHHH
Q 017954 274 GGCLRCKRMWQLLR 287 (363)
Q Consensus 274 ~gc~~c~r~~~l~~ 287 (363)
-+|+.|++...+|.
T Consensus 7 ~~C~~C~~~~~~L~ 20 (60)
T PF00462_consen 7 PGCPYCKKAKEFLD 20 (60)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHH
Confidence 48999999999984
Done!