BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017955
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 284 CAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFEL 328
C +CK+ +GE+ +LPC H++H CIVPWL+ ++CPVCR L
Sbjct: 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 260 PRAAKSAVLELPTVEILSEQ----ETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWL 315
P A+K ++ LP + + + + + C IC G+ AT+LPC H +H C+ WL
Sbjct: 15 PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWL 74
Query: 316 DSRNTCPVCRFELP 329
TCPVCR P
Sbjct: 75 QKSGTCPVCRCMFP 88
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 284 CAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFELPTDDP 333
C IC + GE +LPC H++H C+ WL + CP+CR ++ P
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 284 CAICKDTVNVGETATKLP-CGHVYHGDCIVPWLDSRNTCPVCRFEL 328
CA+C + GE A LP CGH +H +C+ WL S +TCP+CR +
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 283 VCAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVC 324
+CA+C + + PC H +H C++ WL+ R CP+C
Sbjct: 17 LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 278 EQETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCR 325
+ E +C +C + LPC H +H C+ WL + TCP+CR
Sbjct: 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 281 TIVCAICKD----TVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCR 325
T+ C IC D V G CGHV+ C+ L + NTCP CR
Sbjct: 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 281 TIVCAICKD----TVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCR 325
T+ C IC D V G CGHV+ C+ L + NTCP CR
Sbjct: 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 282 IVCAICKD----TVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCR 325
+ C IC D V G CGHV+ C+ L + NTCP CR
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 51
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 273 VEILSEQETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFEL 328
V+ L+++E C IC D G LPC H + CI W D CP+CR ++
Sbjct: 9 VKQLTDEEE--CCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 281 TIVCAICKD----TVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFEL 328
T+ C IC D V G CGHV+ C+ L + NTCP CR ++
Sbjct: 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 281 TIVCAICKD----TVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFEL 328
T+ C IC D V G CGHV+ C+ L + NTCP CR ++
Sbjct: 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 259 APRAAKSAVLELPTVEILSEQETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSR 318
P+ A + LE+ V S ++C IC D + T T C H + DCI+ L S
Sbjct: 33 TPQEAITDGLEI-VVSPRSLHSELMCPICLDMLK--NTMTTKECLHRFCADCIITALRSG 89
Query: 319 NT-CPVCRFEL 328
N CP CR +L
Sbjct: 90 NKECPTCRKKL 100
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 230 IGNPADYMDAAGYEALLQNLAESDGGRRGAPRAAKSAVLELPTVEILSEQETIVCAICKD 289
+G+ + + G + L + S + P+ A + LE+ V S ++C IC D
Sbjct: 3 LGSMSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEI-VVSPRSLHSELMCPICLD 61
Query: 290 TVNVGETATKLPCGHVYHGDCIVPWLDSRNT-CPVCRFEL 328
+ T T C H + DCI+ L S N CP CR +L
Sbjct: 62 MLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 99
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 297 ATKLPCGHVYHGDCIVPWLDSRNTCPVCRFELPT 330
A L C H + CI W+ + CP+CR ++ +
Sbjct: 66 AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 273 VEILSEQETIVC------AICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNT-CPVCR 325
+++ EQ + C +CK + PCGH+ C+ W +S CP CR
Sbjct: 315 IKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
Query: 326 FELPTDDP 333
E+ +P
Sbjct: 375 CEIKGTEP 382
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 273 VEILSEQETIVC------AICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNT-CPVCR 325
+++ EQ + C +CK + PCGH+ C+ W +S CP CR
Sbjct: 7 IKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 66
Query: 326 FELPTDDP 333
E+ +P
Sbjct: 67 CEIKGTEP 74
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 273 VEILSEQETIVC------AICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNT-CPVCR 325
+++ EQ + C +CK + PCGH+ C+ W +S CP CR
Sbjct: 315 IKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
Query: 326 FELPTDDP 333
E+ +P
Sbjct: 375 CEIKGTEP 382
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 297 ATKLPCGHVYHGDCIVPWLDSRNTCPVCRFELPT 330
A L C H + CI W+ + CP+CR ++ +
Sbjct: 66 AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 273 VEILSEQETIVC------AICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNT-CPVCR 325
+++ EQ + C +CK + PCGH+ C+ W +S CP CR
Sbjct: 317 IKVTQEQYELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
Query: 326 FELPTDDP 333
E+ +P
Sbjct: 377 CEIKGTEP 384
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 33.5 bits (75), Expect = 0.17, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 273 VEILSEQETIVC------AICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNT-CPVCR 325
+++ EQ + C +CK + PCGH+ C+ W +S CP CR
Sbjct: 9 IKVTQEQYELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 68
Query: 326 FELPTDDP 333
E+ +P
Sbjct: 69 CEIKGTEP 76
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 273 VEILSEQETIVC------AICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNT-CPVCR 325
+++ EQ + C +CK + PCGH+ C+ W +S CP CR
Sbjct: 321 IKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 380
Query: 326 FELPTDDP 333
E+ +P
Sbjct: 381 CEIKGTEP 388
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 259 APRAAKSAVLELPTVEILSEQETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSR 318
P+ A + LE+ V S ++C IC D + T T C H + DCI+ L S
Sbjct: 13 TPQEAITDGLEI-VVSPRSLHSELMCPICLDMLK--NTMTTKECLHRFCADCIITALRSG 69
Query: 319 NT-CPVCRFEL 328
N CP CR +L
Sbjct: 70 NKECPTCRKKL 80
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 284 CAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFELPT 330
C IC + A L C H + CI W+ + CP+CR ++ +
Sbjct: 67 CIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 110
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 273 VEILSEQETIVC------AICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNT-CPVCR 325
+++ EQ + C +CK + PCGH+ C+ W +S CP CR
Sbjct: 317 IKVTQEQFELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
Query: 326 FELPTDDP 333
E+ +P
Sbjct: 377 CEIKGTEP 384
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 33.1 bits (74), Expect = 0.24, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 273 VEILSEQETIVC------AICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNT-CPVCR 325
+++ EQ + C +CK + PCGH+ C+ W +S CP CR
Sbjct: 10 IKVTQEQFELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 69
Query: 326 FELPTDDP 333
E+ +P
Sbjct: 70 CEIKGTEP 77
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 33.1 bits (74), Expect = 0.27, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 284 CAICKDTVNVGET-ATKLPCGHVYHGDCIVPWLDSRNTCPVC 324
C IC + ++ A LPCGH+ H C L CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 32.0 bits (71), Expect = 0.57, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 302 CGHVYHGDCIVPWLDSRNTCPVCRFELPTDDPEYEEER 339
C H +H CI WL +R CP+ D+ E+E ++
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL-------DNREWEFQK 114
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 31.6 bits (70), Expect = 0.65, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 302 CGHVYHGDCIVPWLDSRNTCPVCRFELPTDDPEYEEER 339
C H +H CI WL +R CP+ D+ E+E ++
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL-------DNREWEFQK 95
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 31.6 bits (70), Expect = 0.68, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 302 CGHVYHGDCIVPWLDSRNTCPVCRFELPTDDPEYEEER 339
C H +H CI WL +R CP+ D+ E+E ++
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL-------DNREWEFQK 105
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 31.6 bits (70), Expect = 0.69, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 302 CGHVYHGDCIVPWLDSRNTCPVCRFELPTDDPEYEEER 339
C H +H CI WL +R CP+ D+ E+E ++
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL-------DNREWEFQK 103
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 31.2 bits (69), Expect = 0.86, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 302 CGHVYHGDCIVPWLDSRNTCPVCRFELPTDDPEYEEER 339
C H +H CI WL +R CP+ D+ E+E ++
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL-------DNREWEFQK 87
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 31.2 bits (69), Expect = 0.91, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 302 CGHVYHGDCIVPWLDSRNTCPVCRFELPTDDPEYEEER 339
C H +H CI WL +R CP+ D+ E+E ++
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL-------DNREWEFQK 97
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 282 IVCAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFELPTDDP 333
I+C+ICK + T T+ C H + CIV N CP C + P
Sbjct: 16 ILCSICKGYLIDATTITE--CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 302 CGHVYHGDCIVPWLDSRNTCPVCRFELPTDDPEYEEER 339
C H +H CI WL +R CP+ D+ E+E ++
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL-------DNREWEFQK 103
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 284 CAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFEL 328
C IC + + + LPC H + CI W+ TCP+C+ +
Sbjct: 8 CPICLE--DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 273 VEILSEQETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFELPTDD 332
++I ++C +C + T + C H + CIV +L++ CP+C ++
Sbjct: 3 IKITELNPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTR 60
Query: 333 P 333
P
Sbjct: 61 P 61
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 302 CGHVYHGDCIVPWLDSRNTCPVCR 325
C H +H C+ W+ N CP+C+
Sbjct: 48 CNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 273 VEILSEQETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFELPTDD 332
++I ++C +C + T + C H + CIV +L++ CP+C ++
Sbjct: 7 IKITELNPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTR 64
Query: 333 P 333
P
Sbjct: 65 P 65
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 273 VEILSEQETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFELPTDD 332
++I ++C +C + T + C H + CIV +L++ CP+C ++
Sbjct: 7 IKITELNPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTR 64
Query: 333 P 333
P
Sbjct: 65 P 65
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 284 CAICKDTVNVGET-ATKLPCGHVYHGDCIVPWLDSRNTCPVC 324
C IC + ++ A LPCGH+ H C L CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 29.3 bits (64), Expect = 3.8, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 284 CAICKDTVNVGETATKLP-CGHVYHGDCIVPWLDSRNTCPVC 324
C IC + N+ A +P C H Y CI +L + CP C
Sbjct: 25 CGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,824,432
Number of Sequences: 62578
Number of extensions: 271413
Number of successful extensions: 586
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 44
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)