BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017955
(363 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 261 bits (667), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 224/358 (62%), Gaps = 57/358 (15%)
Query: 1 MAESPSQAPTPTTPTASDTDPTQYWCHHCEKRVSIETLANLPDVICHECKNGFVESI--- 57
M+++PS +P T +WC+HC KRV +ETL + V+C EC GFVESI
Sbjct: 1 MSDAPSSSPDATA---------SHWCYHCNKRVVVETLDDF--VVCCECNKGFVESIQPT 49
Query: 58 PVTLTPPFSPPSLTPD-HVDDPSFGSQFLQVLRLIAQAARDEDAPQQLTQDPQYGHDFLR 116
P + P P L+PD +V+D S GS FLQ+LRL+A A P+ L Y DF R
Sbjct: 50 PAAYSSPAPPQPLSPDLNVEDSSIGSHFLQMLRLLAHAPSQRSPPRHLDV-LSYEDDFFR 108
Query: 117 IELDGWENDAREDENDENEENRNVDEEGDENENENEDDEENEGGEDRSDNENEENIENED 176
+EL+ +RN ++ ++ + ++ D+EE + E+ + N+ E+
Sbjct: 109 LELN----------------SRNEIDDDEDEDEDDGDEEEEDEEENLTVNDEEDE----- 147
Query: 177 EEDLRRRWRDVLPLRIRDFATRSRSGRNRILDWAEIL----NNSIEFRLEAPESDRYIGN 232
E+DLRRR R PL T+SR+GRNRILDWAEIL +NSIEFR+E SDRY GN
Sbjct: 148 EDDLRRRNR--FPLT----TTQSRTGRNRILDWAEILMGIEDNSIEFRME---SDRYAGN 198
Query: 233 PADYMD-AAGYEALLQNLAESDGGRRG----APRAAKSAVLELPTVEILSEQ--ETIVCA 285
PADY+D AAGYEALLQNLAE DGG G AP AAKSA+ L T E+ S + +VCA
Sbjct: 199 PADYIDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMVMVCA 258
Query: 286 ICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFELPTDDPEYEEERKKRV 343
+CKD + +GET KLPCGH YHGDCIVPWL +RN+CPVCRF+L TDD EYEEERKKR
Sbjct: 259 VCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEERKKRT 316
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 6/126 (4%)
Query: 217 IEFRLEAPESD---RYIGNPADYMDAAGYEALLQNLAESDGGRRGAPRAAKSAVLELPTV 273
EF +E SD R GN DY G E L+Q LAE+D R G P A+KSA+ LPTV
Sbjct: 143 FEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTV 202
Query: 274 EI---LSEQETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFELPT 330
++ + + E CA+C D G ++PC HV+H DC++PWL+ N+CPVCRFELPT
Sbjct: 203 KVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPT 262
Query: 331 DDPEYE 336
DDP+YE
Sbjct: 263 DDPDYE 268
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 84/149 (56%), Gaps = 16/149 (10%)
Query: 217 IEFRLEAPESD---RYIGNPADYMDAAGYEALLQNLAESDGGRRGAPRAAKSAVLELPTV 273
IEF ++ SD R N DY G E L+Q LAE+D R G P A+KSA+ LP V
Sbjct: 151 IEFVIQNNPSDQGFRLPANIGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPLV 210
Query: 274 EILSE---QETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFELPT 330
I E CA+C D G A ++PC H+YH DC++PWL+ N+CPVCR ELPT
Sbjct: 211 NITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPT 270
Query: 331 DDPEYEEERKKRVSAGASVGGASGSAGGN 359
DDP+YE V GA G++GGN
Sbjct: 271 DDPDYERR----------VRGAQGTSGGN 289
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 136/329 (41%), Gaps = 81/329 (24%)
Query: 21 PTQYWCHHCEKRVSIETLANLPDVICHECKNGFVESIPVTLTPPFSPPSLTPDHVDDPSF 80
P +Y+CH C S+E + LPD IC C++GF+E +P + + ++ PS
Sbjct: 8 PGRYFCHCC----SVEIVPRLPDYICPRCESGFIEELPEE--------TRSAENGSAPST 55
Query: 81 GSQFLQVLRLIAQAARD---EDAPQQLTQDPQ-YGHDFLRI-----ELDGWENDAREDEN 131
S A +R E+ Q L PQ YGH I E+ + A+ D++
Sbjct: 56 AS---------ADQSRQQPFENVDQPLFTLPQGYGHFAFGIFDDSFEIPTFPPGAQADDS 106
Query: 132 DENEENRNVDEEGDENENENEDDEENEGGEDRSDNENEENIENEDEEDLRRRWRDVLPLR 191
+ E R E E+ R R+ P R
Sbjct: 107 RDPESRR------------------------------------EREQHSRHRYGARQP-R 129
Query: 192 IRDFATRSRSGRNRILDWAEILNNSIEFRLEAPESDRYIG---------NPADYM-DAAG 241
R A R+ +GR+ + E + + + P + +G NP DY A G
Sbjct: 130 ARLTARRA-TGRHEGVPTLEGIIQQLVNGIITPATIPNLGLGPWGVLHSNPMDYAWGANG 188
Query: 242 YEALLQNLAESDGGRRGAPRAAKSAVLELPTVEILSEQ--ETIVCAICKDTVNVGETATK 299
+A++ L + G P A K + LPTV + E + C +CKD +GE +
Sbjct: 189 LDAIITQLL-NQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQ 247
Query: 300 LPCGHVYHGDCIVPWLDSRNTCPVCRFEL 328
LPC H++H CIVPWL+ ++CPVCR L
Sbjct: 248 LPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 127/321 (39%), Gaps = 68/321 (21%)
Query: 21 PTQYWCHHCEKRVSIETLANLPDVICHECKNGFVESIP--VTLTPPFSPPSLTPDHVDDP 78
P +Y+CH C S+E + LPD IC C++GF+E +P T S PS P P
Sbjct: 8 PGRYFCHCC----SVEIVPRLPDYICPRCESGFIEELPEETRSTENGSAPSTAPTDQSRP 63
Query: 79 SFGSQFLQVLRLIAQAARDEDAPQQLTQDPQ-YGHDFLRIELDGWENDAREDENDENEEN 137
E Q L PQ YG I D +E
Sbjct: 64 PL-----------------EHVDQHLFTLPQGYGQFAFGIFDDSFEIPTFPPGAQA---- 102
Query: 138 RNVDEEGDENENENEDDEENEGGEDRSDNENEENIENEDEEDLRRRWRDVLPLRIRDFAT 197
++G + E+ E D + R R+ P R R T
Sbjct: 103 ----DDGRDPESRRERDHPS-----------------------RHRYGARQP-RAR-LTT 133
Query: 198 RSRSGRNRILDWAEILNNSIEFRLEAPESDRYIG-------NPADYM-DAAGYEALLQNL 249
R +GR+ + E + + + P + +G NP DY A G +A++ L
Sbjct: 134 RRATGRHEGVPTLEGIIQQLVNGIITPATIPSLGPWGVLHSNPMDYAWGANGLDAIITQL 193
Query: 250 AESDGGRRGAPRAAKSAVLELPTVEILSEQ--ETIVCAICKDTVNVGETATKLPCGHVYH 307
+ G P A K + LPTV + E + C +CKD +GE +LPC H++H
Sbjct: 194 L-NQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFH 252
Query: 308 GDCIVPWLDSRNTCPVCRFEL 328
CIVPWL+ ++CPVCR L
Sbjct: 253 DGCIVPWLEQHDSCPVCRKSL 273
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 259 APRAAKSAVLELPTVEILSEQET--IVCAICKDTVNVGETATKLPCGHVYHGDCIVPWLD 316
P A+K A+LELP EI+ E + C++CK+ G+ LPC H +H +CI+ WL
Sbjct: 43 VPEASKRAILELPVHEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLK 102
Query: 317 SRNTCPVCRFELPTDDPEYEEERKKR 342
N+CP+CR+EL TDDP YEE R+ R
Sbjct: 103 KTNSCPLCRYELETDDPVYEELRRFR 128
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 55/98 (56%)
Query: 246 LQNLAESDGGRRGAPRAAKSAVLELPTVEILSEQETIVCAICKDTVNVGETATKLPCGHV 305
++L D P AAK+ V LP I S + + C +C ET ++PC H+
Sbjct: 50 FEDLGLVDWEHHLPPPAAKAVVESLPRTVISSAKADLKCPVCLLEFEAEETVIEMPCHHL 109
Query: 306 YHGDCIVPWLDSRNTCPVCRFELPTDDPEYEEERKKRV 343
+H +CI+PWL N+CP+CR ELPTDD YEE +K +
Sbjct: 110 FHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKA 147
>sp|Q9P0P0|RN181_HUMAN E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1
SV=1
Length = 153
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 52/90 (57%)
Query: 253 DGGRRGAPRAAKSAVLELPTVEILSEQETIVCAICKDTVNVGETATKLPCGHVYHGDCIV 312
D P AAK+ V LP I Q + C +C ETA ++PC H++H CI+
Sbjct: 45 DWDHHLPPPAAKTVVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCIL 104
Query: 313 PWLDSRNTCPVCRFELPTDDPEYEEERKKR 342
PWL N+CP+CR+ELPTDD YEE R+ +
Sbjct: 105 PWLSKTNSCPLCRYELPTDDDTYEEHRRDK 134
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Query: 252 SDGGRRGAPRAAKSAVLELPTVEILSEQ--ETIVCAICKDTVNVGETATKLPCGHVYHGD 309
SD +R P AAK+ V LP V I EQ + + C +C E+ ++PC H++H
Sbjct: 45 SDWDQRLPPPAAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTG 104
Query: 310 CIVPWLDSRNTCPVCRFELPTDDPEYEEERKKR 342
CI+PWL+ N+CP+CR ELPTD+ +YEE +K +
Sbjct: 105 CILPWLNKTNSCPLCRLELPTDNADYEEFKKDK 137
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 8/136 (5%)
Query: 230 IGNPADYMDAA--GYEALLQNLAESDGGRRGAPRAAKSAVLELPTVEILSEQETIV---- 283
IG A+ M G + ++ ++ + DGG AP A+K V +LP + E
Sbjct: 170 IGETANLMQELINGLDMIIPDILD-DGGPPRAPPASKEVVEKLPVIIFTEELLKKFGAEA 228
Query: 284 -CAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFELPTDDPEYEEERKKR 342
C ICK+ + +G+ +LPC H +H C+ PWLD N+CP+CR ELPTDD +YE +++
Sbjct: 229 ECCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDQKYENWKERE 288
Query: 343 VSAGASVGGASGSAGG 358
A GA + G
Sbjct: 289 KEAEEERKGAENAVRG 304
>sp|Q6AXU4|RN181_RAT E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181
PE=1 SV=1
Length = 165
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 55/97 (56%)
Query: 246 LQNLAESDGGRRGAPRAAKSAVLELPTVEILSEQETIVCAICKDTVNVGETATKLPCGHV 305
++L D P AAK+ V LP I S + + C +C ET ++PC H+
Sbjct: 50 FEDLGLVDWEHHLPPPAAKAVVESLPRTVIRSSKAELKCPVCLLEFEEEETVIEMPCHHL 109
Query: 306 YHGDCIVPWLDSRNTCPVCRFELPTDDPEYEEERKKR 342
+H +CI+PWL N+CP+CR ELPTDD YEE +K +
Sbjct: 110 FHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDK 146
>sp|Q3T0W3|RN181_BOVIN E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2
SV=1
Length = 153
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 53/90 (58%)
Query: 253 DGGRRGAPRAAKSAVLELPTVEILSEQETIVCAICKDTVNVGETATKLPCGHVYHGDCIV 312
D P AAK+AV LP I Q + C +C ETA ++PC H++H +CI+
Sbjct: 45 DWDHHLPPPAAKTAVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCIL 104
Query: 313 PWLDSRNTCPVCRFELPTDDPEYEEERKKR 342
PWL N+CP+CR ELPTDD YEE ++ +
Sbjct: 105 PWLSKTNSCPLCRHELPTDDDTYEEHKRDK 134
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 256 RRGAPRAAKSAVLELPTVEILSEQE--TIVCAICKDTVNVGETATKLPCGHVYHGDCIVP 313
+R P A+K V LP V + EQ + C +C GET +LPC H++H CI+P
Sbjct: 49 QRLPPPASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILP 108
Query: 314 WLDSRNTCPVCRFELPTDDPEYEEERKKR 342
WL N+CP+CR ELPTD P+YEE ++++
Sbjct: 109 WLGKTNSCPLCRHELPTDSPDYEEFKQEK 137
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 15/168 (8%)
Query: 173 ENEDEEDLRRRWRDVLPLRIRDFATRSRSGRNRILDWAEILNNSIEFRLEAPESDRYIG- 231
E+ E R+R+ P R R +TR +GRN + E + + + AP + +G
Sbjct: 107 ESRREHQSRQRYGARQP-RAR-LSTRRAAGRNEGVPTLEGIIQQLVNGIIAPTAMSNLGV 164
Query: 232 --------NPADYM-DAAGYEALLQNLAESDGGRRGAPRAAKSAVLELPTVEILSEQ--E 280
NP DY A G + ++ L + G P A + LPT++I E
Sbjct: 165 GPWGVLHSNPMDYAWGANGLDTIITQLL-NQFENTGPPPADTEKIQALPTIQITEEHVGS 223
Query: 281 TIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFEL 328
+ C +CK+ VGE+ +LPC H++H DCI+PWL+ +TCPVCR L
Sbjct: 224 GLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271
Score = 35.4 bits (80), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 23 QYWCHHCEKRVSIETLANLPDVICHECKNGFVESIPVT 60
+Y+CH C + E + LP+ C C +GF+E +P T
Sbjct: 10 RYFCHSC----TAEIIPRLPEYTCPRCDSGFIEELPET 43
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 15/168 (8%)
Query: 173 ENEDEEDLRRRWRDVLPLRIRDFATRSRSGRNRILDWAEILNNSIEFRLEAPESDRYIG- 231
E+ E R+R+ P R R +TR +GRN + E + + + AP + +G
Sbjct: 108 ESRREHQSRQRYGARQP-RAR-LSTRRAAGRNEGVPTLEGIIQQLVNGIIAPTAMSNLGV 165
Query: 232 --------NPADYM-DAAGYEALLQNLAESDGGRRGAPRAAKSAVLELPTVEILSEQ--E 280
NP DY A G + ++ L + G P A + LPT++I E
Sbjct: 166 GPWGVLHSNPMDYAWGANGLDTIITQLL-NQFENTGPPPADNEKIQALPTIQITEEHVGS 224
Query: 281 TIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFEL 328
+ C +CK+ VGE +LPC H++H DCI+PWL+ +TCPVCR L
Sbjct: 225 GLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 23 QYWCHHCEKRVSIETLANLPDVICHECKNGFVESIPVT 60
+Y+CH C + E LP+ C C +GF+E +P T
Sbjct: 10 RYFCHSC----TAEITPRLPEYTCPRCDSGFIEELPET 43
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 15/168 (8%)
Query: 173 ENEDEEDLRRRWRDVLPLRIRDFATRSRSGRNRILDWAEILNNSIEFRLEAPESDRYIG- 231
E+ E R+R+ P R R +TR +GRN + E + + + AP + +G
Sbjct: 108 ESRREHQSRQRYGARQP-RAR-MSTRRGAGRNEGVPTLEGIIQQLVNGIIAPTAMSNLGV 165
Query: 232 --------NPADYM-DAAGYEALLQNLAESDGGRRGAPRAAKSAVLELPTVEILSEQET- 281
NP DY A G + ++ L + G P A + LPT++I E
Sbjct: 166 GPWGVLHSNPMDYAWGANGLDTIITQLL-NQFENTGPPPADTDKIQALPTIQITEEHVGF 224
Query: 282 -IVCAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFEL 328
+ C +CK+ VGE+ +LPC H++H DCI+PWL+ +TCPVCR L
Sbjct: 225 GLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 23 QYWCHHCEKRVSIETLANLPDVICHECKNGFVESIPVT 60
+Y+CH C ++ LP+ C C +GF+E +P T
Sbjct: 10 RYFCHSCTAEIT----PRLPEYTCPRCDSGFIEELPET 43
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 240 AGYEALLQNLAESDGGRRGAPRAAKSAVLELPTVEILSEQE--TIVCAICKDTVNVGETA 297
+G + L L ++ +R P AAK V LP V + EQ + C +C GET
Sbjct: 33 SGMDIDLGALDFTEWDQRLPPPAAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETV 92
Query: 298 TKLPCGHVYHGDCIVPWLDSRNTCPVCRFELPTDDP 333
+LPC H++H CI+PWL N+CP+CR ELPTD P
Sbjct: 93 RQLPCEHLFHSSCILPWLGKTNSCPLCRHELPTDSP 128
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 232 NPADY-MDAAGYEALLQNLAESDGGRRGAPRAAKSAVLELPTVEILSEQ--ETIVCAICK 288
NP DY G +A++ L G P A K + LPTV + EQ + C +CK
Sbjct: 175 NPGDYAWGQTGLDAIVTQLL-GQLENTGPPPADKEKITSLPTVTVTQEQVNTGLECPVCK 233
Query: 289 DTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFELPTDD 332
+ V E +LPC H +H CIVPWL+ +TCPVCR L +D
Sbjct: 234 EDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGED 277
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 23 QYWCHHCEKRVSIETLANLPDVICHECKNGFVESI 57
+++CH C+ V+ LP+ IC C +GF+E +
Sbjct: 19 RFFCHFCKGEVN----PKLPEYICPRCDSGFIEEV 49
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query: 195 FATRSRSGRNRILDWAEILNNSIEFRLEAPESDRYIGNPADY-MDAAGYEALLQNLAESD 253
FA + G W+ +L++ NP DY G +A++ L
Sbjct: 153 FANSAIPGSPHPFSWSGMLHS----------------NPGDYAWGQTGLDAIVTQLL-GQ 195
Query: 254 GGRRGAPRAAKSAVLELPTVEILSEQ--ETIVCAICKDTVNVGETATKLPCGHVYHGDCI 311
G P A K + LPTV + EQ + C +CK+ V E +LPC H +H CI
Sbjct: 196 LENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCI 255
Query: 312 VPWLDSRNTCPVCRFELPTDD 332
VPWL+ +TCPVCR L +D
Sbjct: 256 VPWLELHDTCPVCRKSLNGED 276
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 23 QYWCHHCEKRVSIETLANLPDVICHECKNGFVESI 57
+++CH C+ VS LP+ IC C++GF+E +
Sbjct: 19 RFFCHFCKGEVS----PKLPEYICPRCESGFIEEV 49
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 232 NPADYM-DAAGYEALLQNLAESDGGRRGAPRAAKSAVLELPTVEILSEQ--ETIVCAICK 288
NP DY A G + ++ L + G P A K + LPTV + E + C +CK
Sbjct: 177 NPMDYAWGANGLDTIITQLL-NQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCK 235
Query: 289 DTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFEL 328
+ +GE+ +LPC H++H CIVPWL+ ++CPVCR L
Sbjct: 236 EDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 21 PTQYWCHHCEKRVSIETLANLPDVICHECKNGFVESIP 58
P +Y+CH C S+E + LPD IC C++GF+E +P
Sbjct: 8 PGRYFCHCC----SVEIVPRLPDYICPRCESGFIEELP 41
>sp|O43085|DSC1_SCHPO DSC E3 ubiquitin ligase complex subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dsc1 PE=1 SV=2
Length = 695
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 39/165 (23%)
Query: 200 RSGRNRILDWAEILNNSIEFRLEAP-----ESDRYIGNPADYMDAAG------YEALLQN 248
+ G +R W IL S+ RL P +S+ +G P Y A G ++ L+
Sbjct: 533 KQGTSRSFTWTYILGASV-LRLYLPLAIFIDSELILGFPPKYFFALGLVLWMLFQVLVLL 591
Query: 249 LAESDGGRRGAPRAAKSAVLELPTVEI--LSEQETI--------VCAICKDTVNVGETAT 298
+ ++ G R P K L P + + +Q+ + VC IC + + T +
Sbjct: 592 VQDTLGPRFFLP---KKFFLSSPVYDYHPVIQQDDLEAFMRDANVCPICMQPIELVSTGS 648
Query: 299 KL--------------PCGHVYHGDCIVPWLDSRNTCPVCRFELP 329
L PC H+YH C++ W+++R+ CPVCR LP
Sbjct: 649 TLNPASMMVRRNYMLTPCHHLYHRQCLLQWMETRSICPVCRCHLP 693
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 282 IVCAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRF 326
+ C++C + V VGE LPC H +H CI PWL + TCPVC+F
Sbjct: 209 LTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVCKF 253
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 231 GNPADYM-DAAGYEALLQNLAESDGGRRGAPRAAKSAVLEL----PTVEILSEQETIVCA 285
GNP DY A G + ++ L E G A + + ++ P E++ E+ C
Sbjct: 340 GNPGDYAWGARGLDDIISQLMEQAQGHNAPAPAPEDVIAKMKVQKPPKELIDEEGE--CT 397
Query: 286 ICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCR 325
IC + + + +LPC H +H +CI PWL TC +CR
Sbjct: 398 ICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICR 437
>sp|Q8NG27|PJA1_HUMAN E3 ubiquitin-protein ligase Praja-1 OS=Homo sapiens GN=PJA1 PE=1
SV=2
Length = 643
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 260 PRAAKSAVLELPTVEILSEQ----ETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWL 315
P A+K ++ LP + + + + + C IC GE AT+LPC H +H C+ WL
Sbjct: 567 PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWL 626
Query: 316 DSRNTCPVCRFELP 329
TCPVCR P
Sbjct: 627 QKSGTCPVCRCMFP 640
>sp|O55176|PJA1_MOUSE E3 ubiquitin-protein ligase Praja-1 OS=Mus musculus GN=Pja1 PE=1
SV=3
Length = 578
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 260 PRAAKSAVLELPTVEILSEQ----ETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWL 315
P A+K ++ LP + + + + + C IC GE AT+LPC H +H C+ WL
Sbjct: 502 PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWL 561
Query: 316 DSRNTCPVCRFELP 329
TCPVCR P
Sbjct: 562 QKSGTCPVCRCMFP 575
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 282 IVCAICKDTVNVG--ETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFELP 329
+ C IC D +N + ATK+PCGH++ +C+ WL++ TCP+CR E+P
Sbjct: 105 LTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVP 154
>sp|Q5R4R1|PJA2_PONAB E3 ubiquitin-protein ligase Praja-2 OS=Pongo abelii GN=PJA2 PE=2
SV=1
Length = 708
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 260 PRAAKSAVLELPTVEILSEQETI----VCAICKDTVNVGETATKLPCGHVYHGDCIVPWL 315
P A+K ++ LP +L + I C IC + AT+LPC H +H C+ WL
Sbjct: 606 PPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWL 665
Query: 316 DSRNTCPVCRFELP 329
TCPVCR P
Sbjct: 666 QKSGTCPVCRRHFP 679
>sp|O43164|PJA2_HUMAN E3 ubiquitin-protein ligase Praja-2 OS=Homo sapiens GN=PJA2 PE=1
SV=4
Length = 708
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 260 PRAAKSAVLELPTVEILSEQETI----VCAICKDTVNVGETATKLPCGHVYHGDCIVPWL 315
P A+K ++ LP +L + I C IC + AT+LPC H +H C+ WL
Sbjct: 606 PPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWL 665
Query: 316 DSRNTCPVCRFELP 329
TCPVCR P
Sbjct: 666 QKSGTCPVCRRHFP 679
>sp|Q80U04|PJA2_MOUSE E3 ubiquitin-protein ligase Praja-2 OS=Mus musculus GN=Pja2 PE=1
SV=2
Length = 707
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 260 PRAAKSAVLELPTVEILSEQETI----VCAICKDTVNVGETATKLPCGHVYHGDCIVPWL 315
P A+K ++ LP +L + I C IC + AT+LPC H +H C+ WL
Sbjct: 605 PPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWL 664
Query: 316 DSRNTCPVCRFELP 329
TCPVCR P
Sbjct: 665 QKSGTCPVCRRHFP 678
>sp|Q63364|PJA2_RAT E3 ubiquitin-protein ligase Praja-2 OS=Rattus norvegicus GN=Pja2
PE=2 SV=1
Length = 707
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 260 PRAAKSAVLELPTVEILSEQETI----VCAICKDTVNVGETATKLPCGHVYHGDCIVPWL 315
P A+K ++ LP +L + I C IC + AT+LPC H +H C+ WL
Sbjct: 605 PPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWL 664
Query: 316 DSRNTCPVCRFELP 329
TCPVCR P
Sbjct: 665 QKSGTCPVCRRHFP 678
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 261 RAAKSAVLELPTVEILSEQETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWL-DSRN 319
R K + ++PT + E VCAIC D G+ LPC H YH C+ PWL +R
Sbjct: 207 RLTKEQLKQIPTHDYQKGDEYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRK 266
Query: 320 TCPVCR 325
TCP+C+
Sbjct: 267 TCPICK 272
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 261 RAAKSAVLELPTVEILSEQETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWL-DSRN 319
R K + ++PT + E VCAIC D G+ LPC H YH C+ PWL +R
Sbjct: 207 RLTKEQLKQIPTHDYQKGDEYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRK 266
Query: 320 TCPVCR 325
TCP+C+
Sbjct: 267 TCPICK 272
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 284 CAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRF----------ELP-TDD 332
CA+C ++ + LPC HV+H C+ PWL TCP+C+ LP TD+
Sbjct: 264 CAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSEHCTCPMCKLNILKALGIVPNLPCTDN 323
Query: 333 PEYEEERKKRVSAGASVGGASGSAGGNLSLG 363
++ ER R A + A G G+ SLG
Sbjct: 324 VAFDMERLTRTQA-VNRRAALGDLAGDSSLG 353
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 261 RAAKSAVLELPTVEILSEQETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWL-DSRN 319
R K + ++PT + + VCAIC D G+ LPC H YH C+ PWL +R
Sbjct: 207 RLTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRK 266
Query: 320 TCPVCR 325
TCP+C+
Sbjct: 267 TCPICK 272
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 284 CAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFELPTDD 332
CAIC D++ + A KLPCGH++H C+ WL+ +CP CR L D
Sbjct: 341 CAICWDSM---QAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIAD 386
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 284 CAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFELPTDD 332
CAIC D++ + A KLPCGH++H C+ WL+ +CP CR L D
Sbjct: 341 CAICWDSM---QAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIAD 386
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 284 CAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFEL 328
C IC+ +GE LPC HVYH +CI WL CPVC E+
Sbjct: 197 CVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEV 241
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 234 ADYMDAAGYEALLQNLAESDGGRRGAPRAAKSAVLE-LPTVEI---LSEQETIVCAICKD 289
D ++ YEALL NLAE G + PR A +E LP+ + E +C +C
Sbjct: 304 VDDVEMENYEALL-NLAERLGDAK--PRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFS 360
Query: 290 TVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCR 325
V + LPC H +H C+ WL + TCP+CR
Sbjct: 361 DFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 396
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 234 ADYMDAAGYEALLQNLAESDGGRRGAPRAAKSAVLE-LPTVEI---LSEQETIVCAICKD 289
D ++ YEALL NLAE G + PR A +E LP+ + E +C +C
Sbjct: 247 VDDVEMENYEALL-NLAERLGDAK--PRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFS 303
Query: 290 TVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCR 325
V + LPC H +H C+ WL + TCP+CR
Sbjct: 304 DFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 339
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 284 CAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRF----------ELP-TDD 332
CA+C ++ + LPC HV+H C+ PWL TCP+C+ LP TD+
Sbjct: 264 CAVCIESYKQNDVVRILPCKHVFHKSCVDPWLSEHCTCPMCKLNILKALGIVPNLPCTDN 323
Query: 333 PEYEEERKKRVSAGASVGGASGSAGGNLSLG 363
++ ER R A + A G G+ SLG
Sbjct: 324 VAFDMERLTRTQA-VNRRSALGDLAGDNSLG 353
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 264 KSAVLELPTVEILSEQETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWL-DSRNTCP 322
K + +LP + E VCAIC D G+ LPC H YH C+ PWL ++ TCP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 323 VCR 325
VC+
Sbjct: 280 VCK 282
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 264 KSAVLELPTVEILSEQETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWL-DSRNTCP 322
K + +LP + E VCAIC D G+ LPC H YH C+ PWL ++ TCP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 323 VCR 325
VC+
Sbjct: 280 VCK 282
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 264 KSAVLELPTVEILSEQETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWL-DSRNTCP 322
K + +LP + E VCAIC D G+ LPC H YH C+ PWL ++ TCP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 323 VCR 325
VC+
Sbjct: 280 VCK 282
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 264 KSAVLELPTVEILSEQETIVCAICKDTVNVGETATKLPCGHVYHGDCIVPWL-DSRNTCP 322
K + +LP + E VCAIC D G+ LPC H YH C+ PWL ++ TCP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 323 VCR 325
VC+
Sbjct: 280 VCK 282
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 283 VCAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRFEL 328
VC IC++ + G A KLPC H++H C+ W + TCP CR ++
Sbjct: 290 VCIICREEMVTG--AKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDV 333
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 234 ADYMDAAGYEALLQNLAESDGGRRGAPRAAKSAVLE-LPTVEILSE---QETIVCAICKD 289
D ++ YEALL NLAE G PR A +E LP+ E E +C +C
Sbjct: 345 VDDVEMENYEALL-NLAERLG--EAKPRGLTKADIEQLPSYRFNLENHQSEQTLCVVCFS 401
Query: 290 TVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCR 325
+ LPC H +H C+ WL + TCP+CR
Sbjct: 402 DFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICR 437
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 242 YEALLQNLAESDGGRRGAPRAAKSAVLELPT-VEILSEQETI---VCAICKDTVNVGETA 297
Y + + D R K A++++PT S+++ + CAIC + +T
Sbjct: 257 YIQRFRYMQAKDQQSRNLCSVTKKAIMKIPTKTGKFSDEKDLDSDCCAICIEAYKPTDTI 316
Query: 298 TKLPCGHVYHGDCIVPWLDSRNTCPVCRFEL 328
LPC H +H +CI PWL TCP+C+ ++
Sbjct: 317 RILPCKHEFHKNCIDPWLIEHRTCPMCKLDV 347
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 284 CAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCR 325
C IC++ + V + +LPC HV+H C+ W + TCP CR
Sbjct: 292 CIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTCPTCR 333
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 284 CAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCRF----------ELP-TDD 332
CA+C ++ + LPC HV+H C+ PWL TCP+C+ LP TD+
Sbjct: 264 CAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSEHCTCPMCKLNILKALGIVPNLPCTDN 323
Query: 333 PEYEEERKKRVSA 345
++ ER R A
Sbjct: 324 VAFDMERLTRTQA 336
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 284 CAICKDTVNVGETATKLPCGHVYHGDCIVPWLDSRNTCPVCR 325
C IC++ + V + +LPC HV+H C+ W + TCP CR
Sbjct: 292 CIICREEMTVESSPKRLPCSHVFHAHCLRSWFQRQQTCPTCR 333
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,894,397
Number of Sequences: 539616
Number of extensions: 7653804
Number of successful extensions: 146750
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2387
Number of HSP's successfully gapped in prelim test: 1292
Number of HSP's that attempted gapping in prelim test: 55180
Number of HSP's gapped (non-prelim): 45593
length of query: 363
length of database: 191,569,459
effective HSP length: 119
effective length of query: 244
effective length of database: 127,355,155
effective search space: 31074657820
effective search space used: 31074657820
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)