Citrus Sinensis ID: 017957

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
Protein Sequence
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITVCALLFLKIVIQFPKKEFSLPFSFFLFSFCVDHH
Secondary Structure (PSIPRED)
cccccccccccEEccHHHHHHHHccccEEEHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHccccEEEEccccHHHHHHHHHHcccccccccccEEEEEEcccccccccccccccEEEEEccccHHHcccccHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHccccEEEEccccccccccccccccEEEEccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccEEEEEcccEEEEcccccccHHHHHHHHHccccccEEEEEccccccccccccccHHHcHHHHHccEEEEEEEcccHHHHHHHccccccccEEEcccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccEEEccccHHHHHHccccEEEHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHccHHHccccEEEEEEccHHHHHHcccHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHcccEEEEEcccccccccEEEEccEEEEEEcccEEEEEHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccEEEEEEEEcccEEEEEccccccHHHHHHHHHHcccccEEEEEccccccccccccccHHHHHHHHHccEEEEEEcHHHHHHHHHHcccccccccEEEccHHHHcccc
Coil and Loop (DISEMBL)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAfvggnlgnplseaafhcialpsskpkfQVAVVEVSSyqmeipnkyfcpTVSVVlnltpdhlerhktmknyaltkCHLFShmvntklgllpfgnqHLNEAIKghrfnlawigafpgvkidteaktasfevpavgvvsQLQLHNmkvmgrhnyHNAAVAALSVLGLDIGVDVEALNSTIeilrtpphrmqivhrdiqgvtwvddskatnlEATCTglmdlkghkcVILLGGqakvlngqesngfeklieplnhhrcvITVCALLFLKIVIQfpkkefslpfsfFLFSFCVDHH
Flexible Loop (DISEMBL)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIeilrtpphrmqIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITVCALLFLKIVIQFPKKEFSLPFSFFLFSFCVDHH
Low Complexity Region (SEG)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITVCALLFLKIVIQfpkkefslpfsfflfsfCVDHH
Disordered region (IsUnstruct)
*WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITVCALLFLKIVIQFPKKEFSLPFSFFLFSFCV***
Disordered Region (DISOPRED)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITVCALLFLKIVIQFPKKEFSLPFSFFLFSFCVD**
Disordered Region (DISEMBL)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITVCALLFLKIVIQFPKKEFSLPFSFFLFSFCVDHH
Disordered Region (DISPRO)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITVCALLFLKIVIQFPKKEFSLPFSFFLFSFCVDH*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITVCALLFLKIVIQFPKKEFSLPFSFFLFSFCVDHH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	363	2.2.26 [Sep-21-2011]
Q6AJ52	456	UDP-N-acetylmuramoylalani	yes	no	0.749	0.596	0.340	3e-29
B8FBS0	450	UDP-N-acetylmuramoylalani	yes	no	0.732	0.591	0.332	4e-29
Q2IG29	462	UDP-N-acetylmuramoylalani	yes	no	0.741	0.582	0.328	1e-28
A8ZXW5	459	UDP-N-acetylmuramoylalani	yes	no	0.721	0.570	0.335	6e-27
Q7V0A5	473	UDP-N-acetylmuramoylalani	yes	no	0.730	0.560	0.302	2e-26
Q5X1S4	447	UDP-N-acetylmuramoylalani	yes	no	0.724	0.588	0.282	7e-26
Q1IKG8	453	UDP-N-acetylmuramoylalani	yes	no	0.732	0.587	0.301	1e-25
Q5ZSA3	447	UDP-N-acetylmuramoylalani	yes	no	0.724	0.588	0.279	2e-25
Q5WTI5	447	UDP-N-acetylmuramoylalani	yes	no	0.738	0.599	0.278	4e-25
Q2RK81	455	UDP-N-acetylmuramoylalani	yes	no	0.757	0.604	0.335	7e-25

>sp|Q6AJ52|MURD_DESPS UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=murD PE=3 SV=1

 Score =  129 bits (325), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 143/291 (49%), Gaps = 19/291 (6%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA L ++G +V+ EL  AA V+ R   ++A+TGTNGK+TV + VG +L   G   FVGGN
Sbjct: 91  LARLRRAGVQVLGELALAAPVLDR--PVVAITGTNGKTTVTSLVGDLLRASGKRVFVGGN 148

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           +G PL       + L SS  +  V V+EVSS+Q+E+    F P ++++LNL+PDHL+RH 
Sbjct: 149 IGVPL-------LDLLSSGDEVDVIVLEVSSFQLELAGD-FSPHIALLLNLSPDHLDRHG 200

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
            +  Y   K HLF     T + ++  G+  L     G      ++  F     D      
Sbjct: 201 DLAGYRAAKMHLFQKQGMTDIAIVS-GDDPLCLLSDGCGEASRYLFGFSAAS-DISVAAG 258

Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG-VDVEALNSTIEILRTPP 256
            FE    G      L +  +  R  + NAA AA     L     D+E     I       
Sbjct: 259 HFEFDFAGQREIYSLRDSALDNRTGWLNAAPAAFIARSLACAKADIE---RGIAAFTLDA 315

Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLN 307
           HRM+ V   I GV + +DSKATN  A  + L  L   + +++ GG+ K  N
Sbjct: 316 HRMEPVAS-IAGVQYYNDSKATNTGAVISALQQLV--RVILIAGGRDKGDN 363

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).
Desulfotalea psychrophila (strain LSv54 / DSM 12343) (taxid: 177439)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 9

>sp|B8FBS0|MURD_DESAA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=murD PE=3 SV=1

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 153/295 (51%), Gaps = 29/295 (9%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           L    + G  V+ E++ A++ I     I+AVTGTNGK+TV + +G+M+   GI AFVGGN
Sbjct: 85  LEAAREKGVPVIGEVELASRFI--QAPIIAVTGTNGKTTVTSLIGEMMEASGISAFVGGN 142

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           +GNPL       +     + K QV V E+SS+Q++   + F P V+++ N+T DH++R+ 
Sbjct: 143 IGNPL-------VNYAKGEDKAQVVVAEISSFQLDTI-ESFAPKVALLTNVTEDHMDRYD 194

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
            M+ YA +K  +F +       +L  G    + A+ G      W   F G + + EA  A
Sbjct: 195 GMEGYAASKARVFMNQTGADFAILN-GCDKWSRAMCGGIKASQWF--FTG-REEAEAGIA 250

Query: 198 SFEVPAVGVVSQLQLH------NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
                A+   +  Q H       M + G HN  NAA AAL+         VE +   I+ 
Sbjct: 251 -MNAGAMDFFTGAQKHWSLSLKKMTLSGEHNKENAAAAALAAYAAG--ASVEGIQGAIDA 307

Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI--LLGGQAK 304
            +  PHR++ V R++  V + DDSKATN++A    L  L+G    +  ++GG+ K
Sbjct: 308 FKGLPHRLEFV-REVMDVKYYDDSKATNVDAV---LRALEGFNAPVHLIMGGRDK 358

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Desulfatibacillum alkenivorans (strain AK-01) (taxid: 439235)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q2IG29|MURD_ANADE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=murD PE=3 SV=1

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 148/298 (49%), Gaps = 29/298 (9%)

Query: 22  LQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQML-NHLGIEAFVGG 76
           +Q+ +R    V  E++ AA+ +   + I+ +TGTNGKST     G +L  H     FVGG
Sbjct: 87  IQAARRRGVPVWGEVELAARFL-GGLPIVGITGTNGKSTTTALTGALLARHR--RTFVGG 143

Query: 77  NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
           NLG PLSE         S +P    AVVE+SS+Q+E   + F   V+ VLN+TPDHL+R+
Sbjct: 144 NLGTPLSELVL------SGEPA-AAAVVELSSFQLEGIER-FRARVAAVLNVTPDHLDRY 195

Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFPGVKID-- 191
             +  YA  K  LF+      + +    +     +  A +G      +    P    D  
Sbjct: 196 PDVDAYAAAKARLFATQEPDDVAVANARDPRALAMAGASRGDLHTFGFGAPVPASARDEG 255

Query: 192 ---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
                  TA +  P      + QLHN  + GRHN  NA  A L      +GV  EA+ + 
Sbjct: 256 GEPGPGGTAIWYTPRGRAPERYQLHNRALRGRHNRENAMAAVLCA--RLMGVPGEAVQAG 313

Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAK 304
           ++      HR+++V  + +GV WV+DSKATN+++T  GL        + V+++GG+ K
Sbjct: 314 LDAFPGLHHRLELVA-EGRGVEWVNDSKATNVDSTFVGLAAFPAGAPRVVLIMGGRGK 370

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Anaeromyxobacter dehalogenans (strain 2CP-C) (taxid: 290397)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|A8ZXW5|MURD_DESOH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=murD PE=3 SV=1

 Score =  122 bits (305), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 147/289 (50%), Gaps = 27/289 (9%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           + G  VM E++ AA+ + + +   AVTGTNGK+TV T +G ML   G + FVGGN+G PL
Sbjct: 93  EKGIPVMGEMELAARFVTKPVA--AVTGTNGKTTVTTLLGDMLKASGRQVFVGGNIGAPL 150

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  I          +AVVEVSS+Q++  ++ F P V+V+LN+  DHL R+     Y
Sbjct: 151 -------IGFADKGENADMAVVEVSSFQLDT-SETFRPHVAVLLNIAEDHLARYVDFNAY 202

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-----FNLAWIGAFPGVKIDT--EAK 195
             +K  +F +     + ++   + H+ +A KG R     FN         V  DT  E  
Sbjct: 203 VRSKGRIFENQEADDVAVINGADFHVLQASKGIRSRKLTFNAGKNTQDGAVIGDTAVEIV 262

Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
           TA  +   + V S L      +  RHN  N  +AA ++  L +G  VE + + ++  +  
Sbjct: 263 TAGTKTATISVTSPL------MRARHNMEN--IAAATLAALAMGATVEGIQAAVDGFQGL 314

Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
            HR++ V   I  V + DDSKATN +A    L +    + V+LLGG+ K
Sbjct: 315 RHRLEYVA-SIDDVHYFDDSKATNPDAVRRAL-EFFTSRVVLLLGGEDK 361

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Desulfococcus oleovorans (strain DSM 6200 / Hxd3) (taxid: 96561)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q7V0A5|MURD_PROMP UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=murD PE=3 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 144/291 (49%), Gaps = 26/291 (8%)

Query: 21  LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
           L + G  V+ E++ A + + ++I  + +TGTNGK+TV   +  +L    + A   GN+G 
Sbjct: 99  LKERGIVVIGEINIAWESL-KNINWIGITGTNGKTTVTHLLSHILRENNLFAPFAGNIGT 157

Query: 81  PLSEAAFHCIALPSSKPK-FQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
           PL E A+      S+K K     V E+SS+Q+EI      P + +    TPDHL+RHKT+
Sbjct: 158 PLCEIAY------STKSKNIDWIVAELSSFQIEIATHCIKPKIGIWTTFTPDHLDRHKTL 211

Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
            NY   K  L      ++  +  + +Q+L E  K    N  WI   P V   +++    +
Sbjct: 212 DNYFKIKNSLLKQ---SEFRIYNYDDQYLKENFKS-LLNGIWITTNPNV---SDSDHCDY 264

Query: 200 EVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
            +     + +     L L N K+ G HN  N  +A  +     IG+  E + + +     
Sbjct: 265 WINNENFIVERREKLLSLKNFKLKGNHNTQNLLLAVAA--ARKIGLSTERIKNALLSYEQ 322

Query: 255 PPHRMQ-IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
            PHRM+ I  RD   +  ++DSKATN +++  G+  +KG   +I+ GG+ K
Sbjct: 323 LPHRMETIFQRDELEI--INDSKATNFDSSVAGINAIKGSP-IIISGGRLK 370

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) (taxid: 59919)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q5X1S4|MURD_LEGPA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella pneumophila (strain Paris) GN=murD PE=3 SV=1

 Score =  118 bits (296), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 155/322 (48%), Gaps = 59/322 (18%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           Q+G  +  +++  A+ I  S  ++A+TGTNGKSTV T VG+M    G    V GN+G P+
Sbjct: 87  QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  + +   +  + + V+E+SS+Q+++      P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
              K                   Q +    K   FN   +   P     T+ K  SF  +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQTDIKCISFGKD 237

Query: 201 VPAV---GVVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
            P++   G++ Q             L + ++ + G HN+ NA  A         G+ ++ 
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALA--EAAGISMQH 295

Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
           + + ++     PHR Q V R++ GV W++DSK TN+ AT + +  + G    K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354

Query: 302 QAKVLNGQESNGFEKLIEPLNH 323
           Q K  +      F++L +P++ 
Sbjct: 355 QGKGAD------FQELAQPVSE 370

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Legionella pneumophila (strain Paris) (taxid: 297246)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q1IKG8|MURD_KORVE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Koribacter versatilis (strain Ellin345) GN=murD PE=3 SV=1

 Score =  117 bits (294), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 140/285 (49%), Gaps = 19/285 (6%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           + G  V+ E++ AAQ +P  +  +A+TG+NGK+T  +  G +L   G +  VGGN+G P 
Sbjct: 90  KQGIPVIGEIELAAQFVPGHV--IAITGSNGKTTTTSLCGDILQSGGKKTLVGGNIGTP- 146

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  I+          +V+E+SS+Q+E   + F P ++ +LN+TPDHL+RH T + Y
Sbjct: 147 ------AISFAQLANDDTWSVLEISSFQLETIER-FRPEIAAILNITPDHLDRHGTFEKY 199

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS--FE 200
           A  K  +F +       +L   N+   E  K  +  + W      VK  T  +     F 
Sbjct: 200 AAAKERIFENQREHDFAILNADNEPCVEIAKRVKSQVLWFSRQHEVKHGTFVREDKIYFR 259

Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
            P  G    + + +M + G HN  N  V A   +G+   V  E +   +   +   HR++
Sbjct: 260 DPK-GEREIMPVADMLLKGAHNVEN--VLAAVCVGVAASVAPEQIRKAVSQFKAVEHRLE 316

Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILLGGQAK 304
                ++GV + +DSKATN++AT   L    KG    ++LGG+ K
Sbjct: 317 YTA-TVKGVDYYNDSKATNVDATIKALESFSKG--VHLILGGKDK 358

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Koribacter versatilis (strain Ellin345) (taxid: 204669)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q5ZSA3|MURD_LEGPH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=murD PE=3 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 154/322 (47%), Gaps = 59/322 (18%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           Q+G  +  +++  A+ I  S  ++A+TGTNGKSTV T VG+M    G    V GN+G P+
Sbjct: 87  QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  + +   +  + + V+E+SS+Q+++      P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
              K                   Q +    K   FN   +   P      + K  SF  +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237

Query: 201 VPAV---GVVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
            P++   G++ Q             L + ++ + G HN+ NA  A         G+ ++ 
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALA--EAAGISMQH 295

Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
           + + ++     PHR Q V R++ GV W++DSK TN+ AT + +  + G    K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354

Query: 302 QAKVLNGQESNGFEKLIEPLNH 323
           Q K  +      F++L +P++ 
Sbjct: 355 QGKGAD------FQELAQPVSE 370

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) (taxid: 272624)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q5WTI5|MURD_LEGPL UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella pneumophila (strain Lens) GN=murD PE=3 SV=1

 Score =  115 bits (289), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 155/327 (47%), Gaps = 59/327 (18%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           L    Q+G  +  +++  A+ I  S  ++A+TGTNGKSTV T VG+M    G    V GN
Sbjct: 82  LESARQAGALIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGN 139

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           +G P+       + +   +  + + V+E+SS+Q+++      P V+ +LN+TPDHL+RH 
Sbjct: 140 IGTPV-------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHH 191

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
           TM+ Y   K                   Q +    K   FN   +   P      + K  
Sbjct: 192 TMEAYTQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCI 232

Query: 198 SF--EVPAV---GVVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239
           SF  + P++   G++ Q             L + ++ + G HN+ NA  A         G
Sbjct: 233 SFGKDAPSMGNWGLIEQENTIYLAKGMERLLPVESILIKGVHNWMNALAACALA--EAAG 290

Query: 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCV 296
           + ++ + + ++     PHR Q V R++ GV W++DSK TN+ AT + +  + G    K V
Sbjct: 291 ISMQHILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIV 349

Query: 297 ILLGGQAKVLNGQESNGFEKLIEPLNH 323
           ++ GGQ K  +      F++L +P++ 
Sbjct: 350 LIAGGQGKGAD------FQELAQPVSE 370

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Legionella pneumophila (strain Lens) (taxid: 297245)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q2RK81|MURD_MOOTA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Moorella thermoacetica (strain ATCC 39073) GN=murD PE=3 SV=1

 Score =  115 bits (287), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 149/289 (51%), Gaps = 14/289 (4%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA     G  V SEL+ A +++P  +K++A+TGTNGK+T  +  G++L   G  A VGGN
Sbjct: 83  LARARARGIPVWSELELAYRLLPPGVKVVAITGTNGKTTTTSLCGRILQEAGWPAVVGGN 142

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           +G PL +     IA P S       V EVSS+Q+E     F P V+ +LN+TPDHL+RH 
Sbjct: 143 IGIPLVK-ELQEIA-PGS-----YVVCEVSSFQLEAITS-FHPQVAAILNITPDHLDRHG 194

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG--AFPGVKIDTEAK 195
           +++NY   K  + ++       +L + + H      G R  + +      P +    E  
Sbjct: 195 SLENYIAAKARVMAYQEARDFAILNYDDPHTRSLAGGARSRVLFFSRRERPPLGAWLEDG 254

Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
               ++ A G V       + + G HN  N+  AAL    L +GVD E L  T++     
Sbjct: 255 VICCDLGAGGTVKLCHCEELSLKGSHNLENSMAAALVA--LALGVDPEQLTRTLKTFPAV 312

Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
           PHR++ V  +I GV +++DSK TN EAT   + +   +  V++ GG+ K
Sbjct: 313 PHRLEPVA-EINGVCYINDSKGTNPEATMKAI-NAYSNPLVLIAGGRNK 359

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Moorella thermoacetica (strain ATCC 39073) (taxid: 264732)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
297739715	479	unnamed protein product [Vitis vinifera]	0.873	0.661	0.739	1e-136
147779061	806	hypothetical protein VITISV_002512 [Viti	0.663	0.299	0.728	2e-99
302753318	492	hypothetical protein SELMODRAFT_229823 [	0.862	0.636	0.496	8e-85
302804608	492	hypothetical protein SELMODRAFT_119501 [	0.862	0.636	0.487	1e-83
168039117	521	predicted protein [Physcomitrella patens	0.853	0.595	0.492	2e-81
302804600	492	hypothetical protein SELMODRAFT_119124 [	0.862	0.636	0.5	2e-81
147774763	926	hypothetical protein VITISV_028258 [Viti	0.603	0.236	0.520	1e-73
225454866	307	PREDICTED: UDP-N-acetylmuramoylalanine--	0.655	0.775	0.516	1e-72
303273586	647	predicted protein [Micromonas pusilla CC	0.823	0.462	0.328	9e-36
253997371	452	UDP-N-acetylmuramoylalanine--D-glutamate	0.752	0.603	0.298	5e-28

>gi|297739715|emb|CBI29897.3| unnamed protein product [Vitis vinifera]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/319 (73%), Positives = 274/319 (85%), Gaps = 2/319 (0%)

Query: 13  LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
           L++ GL+ LLQSGKRV+SELDFAA+++PRSIKILAVTGTNGKSTV TF GQML+HLGIE 
Sbjct: 87  LESHGLSFLLQSGKRVLSELDFAAEILPRSIKILAVTGTNGKSTVATFSGQMLSHLGIEV 146

Query: 73  FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
           FVGGNLG PLSEAA  C+  PS KP FQVAVVEVSSYQ+E+PNK+FCP+V+VVLNLT DH
Sbjct: 147 FVGGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHFCPSVAVVLNLTSDH 206

Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--HRFNLAWIGAFPGVKI 190
           LERHKTMKNYA+TKC L SHM N+KLG+LPFGN+ LNEA++   +  NLAWIGAFPGVK+
Sbjct: 207 LERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLNEAMEELVNEVNLAWIGAFPGVKV 266

Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
           D E K AS  VPA+GVVS+L+L  + VMG HNY+NAAVAALSVLGLD+G+D EA++STIE
Sbjct: 267 DKEEKVASLRVPAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGLDMGIDTEAISSTIE 326

Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
            LR PPHRMQIVH+D  GVTW+DDSKATN+EAT TGL+ LK  K VILLGG AKV N QE
Sbjct: 327 KLRVPPHRMQIVHKDSYGVTWIDDSKATNVEATYTGLLGLKEQKSVILLGGLAKVSNSQE 386

Query: 311 SNGFEKLIEPLNHHRCVIT 329
           SNGFE+L+EPL +HRCVIT
Sbjct: 387 SNGFEQLVEPLKYHRCVIT 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779061|emb|CAN60311.1| hypothetical protein VITISV_002512 [Vitis vinifera]

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 177/243 (72%), Positives = 205/243 (84%), Gaps = 2/243 (0%)

Query: 64  MLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS 123
           ML+HLGIE FVGGNLG PLSEAA  C+  PS KP FQVAVVEVSSYQ+E+PNK+FCP+V+
Sbjct: 239 MLSHLGIEVFVGGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHFCPSVA 298

Query: 124 VVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--HRFNLAW 181
           VVLNLT DHLERHKTMKNYA+TKC L SHM N+KLG+LPFGN+ LNEA++   +  NLAW
Sbjct: 299 VVLNLTSDHLERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLNEAMEELVNEVNLAW 358

Query: 182 IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241
           IGAFPGVK+D E K AS  VPA+GVVS+L+L  + VMG HNY+NAAVAALSVLGLD+G+D
Sbjct: 359 IGAFPGVKVDKEEKVASLRVPAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGLDMGID 418

Query: 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
            EA++STIE LR PPHRMQIVH+D  GVTW+DDSKATN+EAT TGL+ LK  K VILLGG
Sbjct: 419 TEAISSTIEKLRVPPHRMQIVHKDSYGVTWIDDSKATNVEATYTGLLGLKEQKSVILLGG 478

Query: 302 QAK 304
            AK
Sbjct: 479 LAK 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302753318|ref|XP_002960083.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii] gi|300171022|gb|EFJ37622.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]

 Score =  320 bits (819), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 159/320 (49%), Positives = 213/320 (66%), Gaps = 7/320 (2%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA  + SG   +SEL FAA+  P+++KI AVTGTNGKSTV TF GQ+L   G+  FVGGN
Sbjct: 102 LAYAMDSGIPTISELGFAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGN 161

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           LG P S+AA  C   PS  P +Q AV+EVSSYQ+E+P   F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFKFPSDDPPYQAAVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNL----AWIGAFPGVKIDTE 193
           +M+NY  TKC LF  M ++KL ++P  ++ L +    +++N     AW+GA PGV++D++
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHADEFLRKV--AYKYNSGSTKAWLGALPGVQLDSQ 278

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
           A+ A   VP     ++L L  +K +G HN  NAA A+L  L LD+GVD   L + I  L 
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLT 338

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
             PHRMQIV +D +GV W++DSKATN++A  TG+  L   K VILLGG AKVL+   S G
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAKVLDEDGSLG 398

Query: 314 FEKLIEPLNHHRCVITVCAL 333
           F+KL + L +HR ++T  A 
Sbjct: 399 FKKLSDLLQNHRAIVTFGAF 418

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302804608|ref|XP_002984056.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii] gi|300148408|gb|EFJ15068.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 156/320 (48%), Positives = 212/320 (66%), Gaps = 7/320 (2%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA  + SG   +SEL  AA+  P+++KI AVTGTNGKSTV TF GQ+L   G+  F+GGN
Sbjct: 102 LAYAMDSGIPTISELGLAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFIGGN 161

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           LG P S+AA  C   PS  P +QV V+EVSSYQ+E+P   F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFKFPSDDPPYQVTVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNL----AWIGAFPGVKIDTE 193
           +M+NY  TKC LF  M ++KL ++P  ++ L +    +++N     AW+GA PG+++D++
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHADEFLRKV--AYKYNSGSTKAWLGALPGIQLDSQ 278

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
           A+ A   VP     ++L L  +K +G HN  NAA A+L  L LD+GVD   L + I  L 
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLT 338

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
             PHRMQIV +D +GV W++DSKATN++A  TG+  L   K VILLGG AKVL+   S G
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAKVLDQDGSLG 398

Query: 314 FEKLIEPLNHHRCVITVCAL 333
           F+KL + L +HR ++T  A 
Sbjct: 399 FKKLSDLLQNHRAIVTFGAF 418

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168039117|ref|XP_001772045.1| predicted protein [Physcomitrella patens subsp. patens] gi|76880192|dbj|BAE45867.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Physcomitrella patens] gi|162676646|gb|EDQ63126.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 154/313 (49%), Positives = 207/313 (66%), Gaps = 3/313 (0%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           +A  +Q+G    SEL FAA  +P +IK+ AVTGTNGKSTV TF  Q+L + G+  FVGGN
Sbjct: 134 IAAAIQAGVPAFSELGFAAAALPGNIKVAAVTGTNGKSTVTTFTSQILRNAGVRTFVGGN 193

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           LG PLS+    C+A P+  P F VAVVEVSSYQ+E+P   F P  +V+LNLTPDHLERHK
Sbjct: 194 LGTPLSDGVLQCLAFPAEDPPFSVAVVEVSSYQLELPGS-FHPKAAVILNLTPDHLERHK 252

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE--AIKGHRFNLAWIGAFPGVKIDTEAK 195
           +M+ Y   KC +FS M  + + ++P  +  L    A+ G +   AW+G  PGV++D +A+
Sbjct: 253 SMEAYGSIKCRVFSRMEASDVAIIPQSDVLLRRLAAMSGSQATRAWMGGLPGVQLDKDAR 312

Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
            A   VP  GV ++L L +++ +G HN HNA  AAL  L LD+G+  E + + I  L+ P
Sbjct: 313 RAIVVVPTTGVEARLYLSSLQAVGTHNAHNAGTAALLALSLDVGLQSEDIQAAIPHLKAP 372

Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
           PHRM+IVH+D QGV WV+DSKATN+++T  G+  + G K V+LLGGQAKV  G    GF 
Sbjct: 373 PHRMEIVHQDDQGVVWVNDSKATNVDSTSVGIRSIVGKKAVVLLGGQAKVGVGSGGLGFG 432

Query: 316 KLIEPLNHHRCVI 328
            L+E L  HR V+
Sbjct: 433 VLVESLQSHRAVV 445

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302804600|ref|XP_002984052.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii] gi|300148404|gb|EFJ15064.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 160/320 (50%), Positives = 213/320 (66%), Gaps = 7/320 (2%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA  + SG   +SEL FAA+  P+++KI AVTGTNGKSTV TF GQ+L   G+  FVGGN
Sbjct: 102 LAYAMDSGIPTISELGFAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGN 161

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           LG P S+AA  C   PS  P +QV V+EVSSYQ+E+P   F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFMFPSDDPPYQVTVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNL----AWIGAFPGVKIDTE 193
           +M+NY  TKC LF  M ++KL ++P G++ L +    +++N     AW+GA PGV++D +
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHGDEFLRKV--AYKYNSGSTKAWLGALPGVQLDNQ 278

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
           A+ A   VP     ++L L  +K +G HN  NAA A+L  L LD+GVD   L + I  L 
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDLGVDEHKLQAAIGQLT 338

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
             PHRMQIV +D +GV W++DSKATN++A  TG+  L   K VILLGG AKVL+   S G
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAKVLDQDGSLG 398

Query: 314 FEKLIEPLNHHRCVITVCAL 333
           F+KL + L +HR ++T  A 
Sbjct: 399 FKKLSDLLQNHRAIVTFGAF 418

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774763|emb|CAN60280.1| hypothetical protein VITISV_028258 [Vitis vinifera]

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 154/296 (52%), Positives = 184/296 (62%), Gaps = 77/296 (26%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
           + SGKR++S+LDFAA+++PRSIKILA TGTNGKST+ TF GQML+HLGIE          
Sbjct: 432 MHSGKRILSKLDFAAEILPRSIKILAATGTNGKSTIATFSGQMLSHLGIE---------- 481

Query: 82  LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
                              VAVVEVSSYQ+E+PNK+FCP++ V LNLT DHLERHKTMKN
Sbjct: 482 -------------------VAVVEVSSYQLEVPNKHFCPSIVVGLNLTSDHLERHKTMKN 522

Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
           YA+TK  L  +                                                V
Sbjct: 523 YAITKKRLPVY------------------------------------------------V 534

Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
           PA+GVVS+L+L  + VMGRHNY+N AVAALS LGLD+ +D EA++STIE LR PPHRMQI
Sbjct: 535 PAIGVVSKLKLGALNVMGRHNYYNVAVAALSDLGLDMXIDTEAISSTIEKLRVPPHRMQI 594

Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
           VH+D   VTW+DDSKATN+EAT  GL+ L   K VI LGG AKV N QES+GFE L
Sbjct: 595 VHKDSYEVTWIDDSKATNVEATYIGLLGLNEQKSVIPLGGLAKVSNSQESDGFEPL 650

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454866|ref|XP_002275450.1| PREDICTED: UDP-N-acetylmuramoylalanine--D-glutamate ligase-like [Vitis vinifera]

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 159/308 (51%), Positives = 191/308 (62%), Gaps = 70/308 (22%)

Query: 13  LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
           L++ GL+ LLQSGKR++S+LDFAA+++PRSIKILA TGTNGKST+ TF GQML+HLGIE 
Sbjct: 10  LESHGLSFLLQSGKRILSKLDFAAEILPRSIKILAATGTNGKSTIATFSGQMLSHLGIEV 69

Query: 73  FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
            V GNLG PLSEAA  C+  PS KP FQVAVVEVSSYQ+E+PNK+FCP+V V L+LT DH
Sbjct: 70  IVEGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHFCPSVVVGLDLTSDH 129

Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
           LERHKTMKNYA+TKC L SHM N+KLG+LPF               L+ +G   G  IDT
Sbjct: 130 LERHKTMKNYAITKCRLLSHMSNSKLGILPFVAA------------LSVLGLDMG--IDT 175

Query: 193 EAKTASFE---VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
           EA +++ E   VP          H M++                                
Sbjct: 176 EAISSTIEKLRVPP---------HRMQI-------------------------------- 194

Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
                       VH+D   VTW+DDSKATN+EAT  GL+ L   K VI LGG AKV N Q
Sbjct: 195 ------------VHKDSYEVTWIDDSKATNVEATYIGLLGLNEQKSVIPLGGLAKVSNSQ 242

Query: 310 ESNGFEKL 317
           ES+GFE L
Sbjct: 243 ESDGFEPL 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|303273586|ref|XP_003056153.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462237|gb|EEH59529.1| predicted protein [Micromonas pusilla CCMP1545]

 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 174/383 (45%), Gaps = 84/383 (21%)

Query: 20  CLLQSGKR--VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           C  + G +  V+SEL FA+Q +P+ + I+A++GTNGKSTV +F  Q+L       F+GGN
Sbjct: 199 CQTKQGSKCTVISELAFASQCLPKMLPIVAISGTNGKSTVCSFTAQLLASCDCRTFMGGN 258

Query: 78  LGNPLSEAAF----------HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLN 127
           +G PLS+ A           H   L    P +  AVVE SSYQ++ P        + +LN
Sbjct: 259 IGKPLSDCALEFILAEHICGHLADLGHHWP-YDAAVVECSSYQLDHPGTLRF-DAACILN 316

Query: 128 LTPDHLERHKTMKNYALTKCHLFSHMVNT-KLGLLP-----------------FGNQHL- 168
           LTPDHLERHK+M NYA  K  +F+ +  T  L +LP                     H+ 
Sbjct: 317 LTPDHLERHKSMANYATAKTQIFAGLRGTHTLAVLPKRESARGRHQSYQVESDSTTDHIV 376

Query: 169 -----------------------------NEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
                                        NE +      LA IG+ PGVK+D   K A  
Sbjct: 377 DLDYDGATLLEKCREAVIKTLMRRVSETPNERVACIGGRLAHIGSLPGVKVDLNTKIAIV 436

Query: 200 EVPAVGVV------SQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IGVDVEALNSTIEIL 252
            +P+          S + L  +  +G HN  NA++A L    L      V  L   ++ L
Sbjct: 437 HLPSNRSSSRQNSPSYVDLSAVSSLGTHNILNASIALLMAHSLSPKDFTVARLKVGLDRL 496

Query: 253 RTPPHRMQIVHR----DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
           +  PHRMQ+V +      +G+ WV+DSKATN+EA   GL            G +A    G
Sbjct: 497 KLLPHRMQLVAQTGNPSFRGIHWVNDSKATNIEAAIVGLQS---------YGRRALAKTG 547

Query: 309 QESN--GFEKLIEPLNHHRCVIT 329
             SN  GF  L+  L  H+ VIT
Sbjct: 548 TASNELGFAALVPALLKHQGVIT 570

Source: Micromonas pusilla CCMP1545

Species: Micromonas pusilla

Genus: Micromonas

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|253997371|ref|YP_003049435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylotenera mobilis JLW8] gi|253984050|gb|ACT48908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera mobilis JLW8]

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 159/325 (48%), Gaps = 52/325 (16%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
           +Q G  V+ +++  AQ  P S K++A+TG NGK+TV T VG+M    G++  V GN+G P
Sbjct: 90  IQRGIPVVGDVELFAQYRPTSAKLIAITGANGKTTVTTLVGEMCKSAGLKTIVAGNIGLP 149

Query: 82  LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
           + +       L    P   V V+E+SS+Q+E  N       + +LNL+ DH++R+ +M++
Sbjct: 150 VLD------TLSMETP--DVYVLELSSFQLETTNSLLA-DAATMLNLSEDHMDRYDSMQS 200

Query: 142 YALTKCHLFSH---------------MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP 186
           YA+ K H+F H               M   KL  + FG   L++ +    + +  +    
Sbjct: 201 YAVAKAHIFYHAKLQVLNRDDAWSLMMARAKLAQVTFG---LDDVVAEQDYGIKQVNGET 257

Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
            +              + G    + + ++K+ G HN  NA  A     G  IG+D   + 
Sbjct: 258 WL--------------SCGTHDLMNIRDLKIAGLHNASNALAAMALCRG--IGLDFAPII 301

Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
            T+   +  PHR++ V  +I  V + DDSK TN+ ATC  L  L   K V++ GG+ K  
Sbjct: 302 QTLYNFKGLPHRVEWV-ANIDDVDYYDDSKGTNVGATCAALSGLS-QKVVLIAGGEGK-- 357

Query: 307 NGQESNGFEKLIEPLN-HHRCVITV 330
            GQ+   F  L E ++ + R V+ +
Sbjct: 358 -GQD---FSPLKEAVSTNARAVVLI 378

Source: Methylotenera mobilis JLW8

Species: Methylotenera mobilis

Genus: Methylotenera

Family: Methylophilaceae

Order: Methylophilales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
TIGR_CMR|CHY_2071	451	CHY_2071 "UDP-N-acetylmuramoyl	0.790	0.636	0.289	1.5e-28
TIGR_CMR|GSU_3071	452	GSU_3071 "UDP-N-acetylmuramoyl	0.355	0.285	0.366	8.4e-25
UNIPROTKB|Q97RU8	450	murD "UDP-N-acetylmuramoylalan	0.721	0.582	0.298	9.9e-23
TIGR_CMR|CPS_4467	471	CPS_4467 "UDP-N-acetylmuramoyl	0.779	0.600	0.291	1.2e-22
TIGR_CMR|CJE_0482	402	CJE_0482 "UDP-N-acetylmuramoyl	0.377	0.340	0.309	4.9e-16
TIGR_CMR|SPO_1187	466	SPO_1187 "UDP-N-acetylmuramoyl	0.272	0.212	0.351	1.3e-15
TIGR_CMR|BA_4051	450	BA_4051 "UDP-N-acetylmuramoyla	0.768	0.62	0.248	8.3e-14
TIGR_CMR|SO_4221	439	SO_4221 "UDP-N-acetylmuramoyla	0.327	0.271	0.361	1.8e-13
UNIPROTKB|P14900	438	murD [Escherichia coli K-12 (t	0.581	0.481	0.269	5.7e-12
UNIPROTKB|Q9KPG5	440	murD "UDP-N-acetylmuramoylalan	0.625	0.515	0.255	1.3e-11

TIGR_CMR|CHY_2071 CHY_2071 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 88/304 (28%), Positives = 154/304 (50%)

Query:     2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV 61
             W L +      L    +A  L+ G  V+ E++ A + +     I+AVTGTNGK+T  +++
Sbjct:    69 WELLVVSPGVPLTEEPIAYSLKEGIPVLGEIELAYKEL--KAPIIAVTGTNGKTTTTSWI 126

Query:    62 GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
             G++L   G +  + GN+G PL EA          + ++    +EVSS+Q+E   K F P 
Sbjct:   127 GEVLKIAGFKTLIAGNIGYPLIEAV---------EEEWDAVSLEVSSFQLETI-KSFKPK 176

Query:   122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAW 181
             V+V+LNLTPDHL+RHKT++ Y   K  +F +   T + +L + +  +    +     + +
Sbjct:   177 VAVLLNLTPDHLDRHKTLEGYLEAKARIFINQDRTDVTVLNYDDPRIRSLGRKTPGRVFY 236

Query:   182 IGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
                   ++     K     V ++GV  ++  + N+ + G HN  NA +A ++      GV
Sbjct:   237 FSQKEELEEGVFVKKGKIVVRSLGVEEEIIDIENLPLPGPHNLENA-LATVAACW-SFGV 294

Query:   241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
               + +   +   +   HR++ V  +I GV +V+DSK TN ++T   L   +    V++ G
Sbjct:   295 SGKNIERGLRNFQGVAHRLEKV-AEINGVLYVNDSKGTNPDSTIKALNSYE-RPIVLIAG 352

Query:   301 GQAK 304
             G+ K
Sbjct:   353 GRNK 356

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|GSU_3071 GSU_3071 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 230 (86.0 bits), Expect = 8.4e-25, Sum P(2) = 8.4e-25
 Identities = 51/139 (36%), Positives = 82/139 (58%)

Query:    23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
             ++G+ V++E++ A++ I  +  ++A+TGTNGK+T  T  G++    G   FVGGN+GNPL
Sbjct:    90 RAGREVITEIELASRFI--TAPLVAITGTNGKTTTTTLTGELFAGCGFRTFVGGNIGNPL 147

Query:    83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
              E       L  +       VVE+SS+Q+E     F PTV+V+LN+T DHL+R+ T + Y
Sbjct:   148 IE-------LVETGAAVDRVVVEISSFQLEWIRS-FRPTVAVLLNITEDHLDRYATYQEY 199

Query:   143 ALTKCHLFSHMVNTKLGLL 161
                K  +F +   +   +L
Sbjct:   200 IDAKARIFKNQTASDWAVL 218

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

UNIPROTKB|Q97RU8 murD "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 267 (99.0 bits), Expect = 9.9e-23, P = 9.9e-23
 Identities = 84/281 (29%), Positives = 140/281 (49%)

Query:    22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
             L  G  V++E++ A  +      I+ +TG+NGK+T  T +G++L   G    + GN+G P
Sbjct:    93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150

Query:    82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
              S+ A     + S K      V+E+SS+Q+ +  + F P ++V+ NL P H++ H +   
Sbjct:   151 ASQVA----QIASDK---DTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202

Query:   142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFE 200
             Y   K ++ + M      +L F NQ L + +       A +  F  + K+D  A     +
Sbjct:   203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDG-AYLEDGQ 258

Query:   201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
             +   G V  +  + + V G HN  NA +A ++V  L   VD + +  T+       HR+Q
Sbjct:   259 LYFRGEVV-MAANEIGVPGSHNVENA-LATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQ 315

Query:   261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
              V  DI+GV + +DSK+TN+ AT   L      K V++ GG
Sbjct:   316 FVD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGG 355

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|CPS_4467 CPS_4467 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 267 (99.0 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 88/302 (29%), Positives = 146/302 (48%)

Query:    13 LKATGLACLLQSGKRVMSELDFAAQVIPRSI---KILAVTGTNGKSTVVTFVGQMLNHLG 69
             L + G+  L+     V+ +++    V    I   K+LAVTG+NGKSTVV+ +  +   +G
Sbjct:    87 LVSEGITALIPENCLVIGDVELFCLVNNSRISPMKMLAVTGSNGKSTVVSLLASLAKAIG 146

Query:    70 IEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ--VAVVEVSSYQMEIPNKYFCPTVSVVLN 127
             + A + GN+G P+     H   + +S+   Q  + +VE+SS+Q+E  +       SV LN
Sbjct:   147 VNAALAGNIGEPILNL-LHRENVYNSQLANQPDIVIVELSSFQLETLSSMHAIAASV-LN 204

Query:   128 LTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG 187
             L+ DHL+RHKT+ NY   K  ++      K+ ++   +Q  N  +         +     
Sbjct:   205 LSDDHLDRHKTLANYQAIKQSIYPQ---AKIAVVSREDQASNTLVAAQEIISFGLNKPEQ 261

Query:   188 VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
                  +A      V   G  + + +  + + G HN  N  +AAL+ LG   G  + A+  
Sbjct:   262 DCFGLQAIDNKM-VMMFGEQALISIDELPLAGMHNALNY-MAALA-LGYSAGWSLSAMTE 318

Query:   248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATC---TGLMD-LKG-HKCVILLGGQ 302
              +       HR Q V  +   + W++DSKATN+ AT    TGL+  L G +K +++ GG 
Sbjct:   319 NLAGFMGLAHRCQRVASE-DYIQWINDSKATNVGATLAAITGLVPTLTGQNKLILIAGGD 377

Query:   303 AK 304
              K
Sbjct:   378 GK 379

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|CJE_0482 CJE_0482 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 185 (70.2 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
 Identities = 48/155 (30%), Positives = 78/155 (50%)

Query:    21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
             L+Q  K + SE DF   ++P+S+ I   +GTNGK+T       +L+H+G  A +GGN+G 
Sbjct:    71 LIQKAKNLQSEYDFFYDIMPKSVWI---SGTNGKTTTTQMATHLLSHIG--AVMGGNVGT 125

Query:    81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
             PL+E            P  ++ ++E SS+ +   +K   P +  +L ++PDHL  H +  
Sbjct:   126 PLAEL----------NPYEKLWILETSSFTLHYTHKAK-PEIYALLPISPDHLSWHGSFD 174

Query:   141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH 175
             NY   K  +   M    + +LP    + N   K H
Sbjct:   175 NYVQDKLSVLKRMNECDVTILP--KIYANTPTKAH 207

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|SPO_1187 SPO_1187 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 156 (60.0 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
 Identities = 38/108 (35%), Positives = 59/108 (54%)

Query:    44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
             +++AVTG+NGKST    +  +L+  G    + GN+G  + +        P  +    V V
Sbjct:   121 RVVAVTGSNGKSTTSALIHHILSEAGRPVQLAGNIGRGVLDIE------PGEEGS--VVV 172

Query:   104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151
             +E+SSYQ ++  +   P V+V  NL+PDHL+RH  M  Y   K  LF+
Sbjct:   173 LELSSYQTDLA-RALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFA 219

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|BA_4051 BA_4051 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 203 (76.5 bits), Expect = 8.3e-14, P = 8.3e-14
 Identities = 75/302 (24%), Positives = 136/302 (45%)

Query:    28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
             +++E++ A ++       + +TG+NGK+T      +ML        + GN+G    E A 
Sbjct:    99 IVTEVELAYRI--SEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEVA- 155

Query:    88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
                    +K   +V V E+SS+Q+ +  + F P ++  LNL   HL+ H T K Y L K 
Sbjct:   156 -----QDAKEN-EVVVTELSSFQL-MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKA 208

Query:   148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
             ++F +       ++   +  +       +           ++     K  +    A  VV
Sbjct:   209 NIFKNQTENDYSVINADDADVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKAEKVV 268

Query:   208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
                ++ ++ + G+HN  N  +AA+S+  L +GV  EA+ + ++      HR++ V   I 
Sbjct:   269 ---EVDDIVLPGQHNLENI-LAAMSIAKL-LGVSNEAITAVLKRFTGVKHRLEYV-TTIN 322

Query:   268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCV 327
                + +DSKATN+ AT   L        V+L GG  +   G E   F+ LI    + + +
Sbjct:   323 NRKFYNDSKATNMLATEKALSAFT-QPTVLLAGGLDR---GNE---FDDLIPYFKNVKAI 375

Query:   328 IT 329
             +T
Sbjct:   376 VT 377

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|SO_4221 SO_4221 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 200 (75.5 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 47/130 (36%), Positives = 71/130 (54%)

Query:    22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
             L  G  V+ +++ FA ++  R   ++ +TG+NGK+TV T VG+ML   GI   VGGN+G 
Sbjct:    87 LDMGIEVIGDVELFAREIADRKPCVIGITGSNGKTTVTTLVGEMLREAGIAVAVGGNIGI 146

Query:    81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
             P         AL   K    + V+E+SS+Q+E  +   C   S  LN+T DH++R+  M 
Sbjct:   147 P---------ALDLLKENADIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196

Query:   141 NYALTKCHLF 150
              Y   K  L+
Sbjct:   197 AYRKAKLRLY 206

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

UNIPROTKB|P14900 murD [Escherichia coli K-12 (taxid:83333)]

 Score = 187 (70.9 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 63/234 (26%), Positives = 110/234 (47%)

Query:    18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
             L+    +G  ++ +++   +       I+A+TG+NGKSTV T VG+M    G+   VGGN
Sbjct:    82 LSAAADAGIEIVGDIELFCR--EAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN 139

Query:    78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
             +G P         AL     + ++ V+E+SS+Q+E  +       + +LN+T DH++R+ 
Sbjct:   140 IGLP---------ALMLLDDECELYVLELSSFQLETTSSLQA-VAATILNVTEDHMDRYP 189

Query:   138 T-MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAK 195
               ++ Y   K  ++    N K+ ++   +  L   I+G        G   G   ++ +  
Sbjct:   190 FGLQQYRAAKLRIYE---NAKVCVVN-ADDALTMPIRGADERCVSFGVNMGDYHLNHQQG 245

Query:   196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNS 247
                  V    V   L +  MK+ G+HNY NA  A+A     GL     ++AL +
Sbjct:   246 ETWLRVKGEKV---LNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTT 296

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0071555 "cell wall organization" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=IEA;IDA

GO:0009252 "peptidoglycan biosynthetic process" evidence=IEA

UNIPROTKB|Q9KPG5 murD "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 184 (69.8 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 66/258 (25%), Positives = 117/258 (45%)

Query:     2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
             W L WL   +  +   G+A        +L +G  V+ +++  A  +     ++A+TG+NG
Sbjct:    61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118

Query:    54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
             KSTV    G + N  G++A VGGN+G P         AL    P  ++ V+E+SS+Q+E 
Sbjct:   119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169

Query:   114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
              +       +  LNL+ DH++R++ M++Y   K  +F H     +      N    +   
Sbjct:   170 TSSLKLKAAAF-LNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV------NADDTQTFP 222

Query:   174 GHRFNLAWI--GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVA 229
              H  +L  +  G     +    A+    E       + +    + ++GRHN  N    +A
Sbjct:   223 DHAAHLQVVTFGVEQAAQFSL-AQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVLA 281

Query:   230 ALSVLGLDIGVDVEALNS 247
              L   G++  + ++AL S
Sbjct:   282 LLDSAGVNFRLALDALKS 299

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.9	LOW CONFIDENCE prediction!
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00025526001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (402 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037717001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (527 aa)	•		•			•	•		0.989
	GSVIVG00003087001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (510 aa)	•		•	•		•	•		0.983
	GSVIVG00017740001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (320 aa)	•		•	•			•		0.975
	GSVIVG00003447001	SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (374 aa)	•		•				•		0.975
	GSVIVG00038228001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (344 aa)	•		•				•		0.973
	GSVIVG00000431001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (510 aa)	•		•			•	•	•	0.954
	GSVIVG00027244001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (424 aa)	•						•		0.948
	GSVIVG00032399001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (228 aa)	•						•		0.946
	GSVIVG00021622001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (423 aa)	•						•		0.940
	GSVIVG00027807001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (471 aa)	•		•				•		0.919

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	363
COG0771	448	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-gluta	7e-58
TIGR01087	433	TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-gl	9e-55
PRK14106	450	PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	6e-40
PRK03803	448	PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	3e-38
PRK02472	447	PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	9e-38
PRK02705	459	PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	4e-37
PRK02006	498	PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	2e-36
PRK01390	460	PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	3e-34
pfam08245	178	pfam08245, Mur_ligase_M, Mur ligase middle domain	3e-28
PRK03815	401	PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	5e-28
PRK04308	445	PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	1e-27
PRK01438	480	PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	2e-27
PRK03806	438	PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	8e-27
PRK01368	454	PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	3e-26
PRK01710	458	PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	6e-25
PRK04663	438	PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	1e-24
PRK00141	473	PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	2e-24
PRK04690	468	PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	2e-24
COG0770	451	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide sy	5e-21
PRK00139	460	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-gluta	7e-21
TIGR01085	464	TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide sy	2e-20
COG0769	475	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synt	4e-19
PRK00683	418	PRK00683, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	4e-19
TIGR01143	417	TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--	4e-18
PRK03369	488	PRK03369, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	2e-17
PRK11929	958	PRK11929, PRK11929, putative bifunctional UDP-N-ac	1e-16
PRK11929	958	PRK11929, PRK11929, putative bifunctional UDP-N-ac	5e-14
TIGR01081	448	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamm	1e-09
COG0773	459	COG0773, MurC, UDP-N-acetylmuramate-alanine ligase	3e-09
PRK14022	481	PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-g	2e-08
TIGR01082	448	TIGR01082, murC, UDP-N-acetylmuramate--alanine lig	6e-08
PRK00421	461	PRK00421, murC, UDP-N-acetylmuramate--L-alanine li	1e-05
PRK14573	809	PRK14573, PRK14573, bifunctional D-alanyl-alanine	1e-04
PRK11930	822	PRK11930, PRK11930, putative bifunctional UDP-N-ac	6e-04
pfam02875	88	pfam02875, Mur_ligase_C, Mur ligase family, glutam	0.004

>gnl|CDD|223842 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

 Score =  194 bits (494), Expect = 7e-58
 Identities = 83/310 (26%), Positives = 141/310 (45%), Gaps = 39/310 (12%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
             +G  ++ +++   ++   +  I+A+TGTNGK+T  + +  +L   G++A +GGN+G P
Sbjct: 90  KAAGIEIIGDIELFYRLSGEA-PIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148

Query: 82  LSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMK 140
             E                V V+E+SS+Q+E   +    P ++V+LN++ DHL+RH +M+
Sbjct: 149 ALELL-------EQAEPADVYVLELSSFQLETTSS--LRPEIAVILNISEDHLDRHGSME 199

Query: 141 NYALTKCHLFSHMVNTKLGLLPFGN-QHLNEAIKGHRFNLAWIGAFP----GVKIDTEAK 195
           NYA  K  +      T++ ++   +      A +  +  + W         G  I     
Sbjct: 200 NYAAAKLRILEGQ--TEVAVINADDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKL 257

Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
               E              +K+ G HN  N  AA+A    LG+     +EAL+S      
Sbjct: 258 VFKGEKLLPAD-------ELKLPGAHNLENALAALALARALGVPPEAILEALSS----FT 306

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
             PHR++ V  +  GV +++DSKATN++AT   L    G   +++ GG  K         
Sbjct: 307 GLPHRLEFV-GEKDGVLFINDSKATNVDATLAALSGFDG-PVILIAGGDDK------GAD 358

Query: 314 FEKLIEPLNH 323
           F  L E L  
Sbjct: 359 FSPLAEILAK 368

Length = 448

>gnl|CDD|233266 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase

 Score =  185 bits (471), Expect = 9e-55
 Identities = 67/284 (23%), Positives = 132/284 (46%), Gaps = 22/284 (7%)

Query: 21  LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
             + G  V+ +++   +++P    ++A+TGTNGK+T  + +  +L   G++AF+GGN+G 
Sbjct: 82  AAKRGIPVVGDIELFLRLVPL--PVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGT 139

Query: 81  PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
           P  E               ++ V+E+SS+Q+E       P ++++LN++ DHL+ H + +
Sbjct: 140 PALEVLDQ--------EGAELYVLELSSFQLETTES-LRPEIALILNISEDHLDWHGSFE 190

Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
           +Y   K  +F+      + +L   +       +  +  + W           +       
Sbjct: 191 DYVAAKLKIFARQTEGDVAVLNADDPRFARLAQKSKAQVIWFS-------VEKDAERGLC 243

Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
           +   G+  +       ++G HN  N   A    L   +G+++EA+   +   +  PHR++
Sbjct: 244 IRDGGLYLKPNDLEGSLLGLHNAENILAAIA--LAKSLGLNLEAILEALRSFKGLPHRLE 301

Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
            V     GV + +DSKATN+ AT   L        ++++GG  K
Sbjct: 302 YVG-QKNGVHFYNDSKATNVHATLAALSAFDN-PVILIVGGDDK 343

[Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 433

>gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  146 bits (370), Expect = 6e-40
 Identities = 85/302 (28%), Positives = 139/302 (46%), Gaps = 38/302 (12%)

Query: 28  VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
           V+ E++ A +       I+A+TGTNGK+T  T +G++  + G +  V GN+G PL +A  
Sbjct: 95  VIGEVELAYRFSKA--PIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYPLIDAV- 151

Query: 88  HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
                        + V EVSS+Q+E   K F P V  +LN+TPDHL+RHKTM+NY   K 
Sbjct: 152 -----EEYGED-DIIVAEVSSFQLET-IKEFKPKVGCILNITPDHLDRHKTMENYIKAKA 204

Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP---------GVKIDTEAKTAS 198
            +F +   +   +L + +       K  +  +                GV +       S
Sbjct: 205 RIFENQRPSDYTVLNYDDPRTRSLAKKAKARV-----IFFSRKSLLEEGVFVKNGKIVIS 259

Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
                  V+    +  + + G HN  N  AA AA       +G+  + + +T++  +   
Sbjct: 260 LGGKEEEVID---IDEIFIPGEHNLENALAATAA----AYLLGISPDVIANTLKTFKGVE 312

Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
           HR++ V  +I GV +++DSK TN +A    L   +    V++ GG  K   G + + F K
Sbjct: 313 HRIEFV-AEINGVKFINDSKGTNPDAAIKALEAYET-PIVLIAGGYDK---GSDFDEFAK 367

Query: 317 LI 318
             
Sbjct: 368 AF 369

Length = 450

>gnl|CDD|235160 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  141 bits (358), Expect = 3e-38
 Identities = 94/306 (30%), Positives = 144/306 (47%), Gaps = 50/306 (16%)

Query: 41  RSIK--ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPK 98
           R  K  ++A+TG+NGKSTV T VG+M    G    VGGN+G P         AL      
Sbjct: 104 REAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP---------ALDLLSDD 154

Query: 99  FQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMV 154
            ++ V+E+SS+Q+E  +      V+ VLN++ DH++R+  ++ Y   K  ++      + 
Sbjct: 155 PELYVLELSSFQLETTHSLNA-EVATVLNISEDHMDRYSDLEAYHQAKHRIYRGAKQVVF 213

Query: 155 NTK----LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL 210
           N        L+P  NQ              W     G++        +     +  V +L
Sbjct: 214 NRDDALTRPLVPD-NQPCLSFGLNAPDFDEW-----GLREGDGETYLAHGFERLMPVREL 267

Query: 211 QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQIVHRDIQ 267
                K+ G HN  N A+AAL+ LG   G+  EA+   +E+LRT    PHR + V R++ 
Sbjct: 268 -----KLRGSHNLAN-ALAALA-LGEAAGLPKEAM---LEVLRTFTGLPHRCEWV-REVA 316

Query: 268 GVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
           GV + +DSK TN+ AT   +  L  H   K V++ GG  K   G +   F  L EP+  +
Sbjct: 317 GVDYYNDSKGTNVGATVAAIEGLGAHIQGKLVLIAGGDGK---GAD---FSPLREPVAKY 370

Query: 325 -RCVIT 329
            R V+ 
Sbjct: 371 VRAVVL 376

Length = 448

>gnl|CDD|235041 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  140 bits (355), Expect = 9e-38
 Identities = 89/312 (28%), Positives = 137/312 (43%), Gaps = 75/312 (24%)

Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+ +TG+NGK+T  T +G+ML   G  A + GN+G P SE A        +       V+
Sbjct: 110 IIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYPASEVA------QKATAD-DTLVM 162

Query: 105 EVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV--------- 154
           E+SS+Q M I    F P ++V+ N+ P HL+ H T +NY   K ++  +           
Sbjct: 163 ELSSFQLMGIET--FRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVINF 220

Query: 155 ----------NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
                      TK  ++PF      +   G       +  F G KI              
Sbjct: 221 DQEEVKELAKQTKATVVPFSTT--EKVEDGAYIKDGAL-YFKGEKI-------------- 263

Query: 205 GVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRM 259
                +   ++ + G HN  N  AA+AA  +L    GV  EA+    E+L T     HR+
Sbjct: 264 -----MAADDIVLPGSHNLENALAAIAAAKLL----GVSNEAI---REVLSTFSGVKHRL 311

Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQE-SNGFEKL 317
           Q V   I G  + +DSKATN+ AT      L G ++ V+LL G      G +  N F++L
Sbjct: 312 QYV-GTIDGRKFYNDSKATNILAT---QKALSGFNQPVVLLAG------GLDRGNEFDEL 361

Query: 318 IEPLNHHRCVIT 329
           +  L + + ++ 
Sbjct: 362 VPYLKNVKAMVV 373

Length = 447

>gnl|CDD|235059 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  138 bits (351), Expect = 4e-37
 Identities = 94/300 (31%), Positives = 141/300 (47%), Gaps = 47/300 (15%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           + G  V+ E++ A + + + I  + +TGTNGK+TV   +  +L   G+ A   GN+G   
Sbjct: 90  ERGIEVIGEIELAWRAL-KHIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNIGYAA 148

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
            E A   +       K    V E+SSYQ+E   +   P + +    TPDHLERH T++NY
Sbjct: 149 CELA---LLRSGKAQKPDWIVAELSSYQIESSPE-LAPKIGIWTTFTPDHLERHGTLENY 204

Query: 143 ALTKCHLFSHMVNTKLGLL----PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
              K  L      +++ +L    P+  QH +   KG+     W          T+ K AS
Sbjct: 205 FAIKASLLE---RSEIRILNGDDPYLRQHRSSWPKGY-----WTS--------TQGK-AS 247

Query: 199 FEVPAVGVVSQ-----------LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEAL 245
               A G + +             L  +K+ G HN  N   AVAA  + GL      EAL
Sbjct: 248 LLGQADGWILEEGWVVERGEPLFPLSALKMPGAHNLQNLLLAVAAARLAGLSAEAIAEAL 307

Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAK 304
            S   +    PHR++ +   I G+ +++DSKATN +A   GL  + G   VIL+ GG+AK
Sbjct: 308 RSFPGV----PHRLERI-GTINGIDFINDSKATNYDAAEVGLKAVPGP--VILIAGGEAK 360

Length = 459

>gnl|CDD|234995 PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  137 bits (348), Expect = 2e-36
 Identities = 98/349 (28%), Positives = 146/349 (41%), Gaps = 58/349 (16%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPR------SIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
           +A   + G  V  E++  AQ +        + K+LA+TGTNGK+T     G +    G +
Sbjct: 90  VAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK 149

Query: 72  AFVGGNLGNPLSEAAFHCI---ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNL 128
             V GN+     +     I   ALP       V V+E+SS+Q+E       P  + VLN+
Sbjct: 150 VAVAGNISPAALDKLMEAIDAGALP------DVWVLELSSFQLET-THTLAPDAATVLNI 202

Query: 129 TPDHLERHKTMKNYALTKCHLFS---------------HMV--NTKLGLLPFGNQHLNEA 171
           T DHL+ H +M  YA  K  +F                 M         + FG   L+E 
Sbjct: 203 TQDHLDWHGSMAAYAAAKARIFGPRTVRVLNRDDARVMAMAPPGGAADAVTFG---LDEP 259

Query: 172 IKGHRFNL------AWIGA-----FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
                + L      AW+                 K  +   P + +   +    +++ G 
Sbjct: 260 AADGDYGLLRDNGMAWLVEAEDRDAADPAPSRRRKKDAAPPPDIRLKRLMPADALRIRGL 319

Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
           HN  N A+AAL+ L   IG+    L   +   R  PHR+++V   I GV + DDSK TN+
Sbjct: 320 HNAAN-ALAALA-LARAIGLPAAPLLHGLREYRGEPHRVELV-ATIDGVDYYDDSKGTNV 376

Query: 281 EATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVI 328
            AT   L  L   + V++ GG  K   GQ+   F  L  P+  H R V+
Sbjct: 377 GATVAALDGL-AQRVVLIAGGDGK---GQD---FSPLAAPVARHARAVV 418

Length = 498

>gnl|CDD|234950 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  131 bits (331), Expect = 3e-34
 Identities = 79/260 (30%), Positives = 106/260 (40%), Gaps = 48/260 (18%)

Query: 44  KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
             +A+TGTNGKST    +  +L   G +  +GGN+G  +       + L       +V V
Sbjct: 115 PFIAITGTNGKSTTTALIAHILREAGRDVQMGGNIGTAV-------LTLEPPPAG-RVYV 166

Query: 104 VEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162
           +E+SSYQ++  P+    P V V+LNLTPDHL+RH TM+ YA  K  LF+           
Sbjct: 167 LELSSYQIDLAPS--LDPDVGVLLNLTPDHLDRHGTMEGYAAAKERLFA---GQGPDTAV 221

Query: 163 FG---------------NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
            G                      I   +     + A  G  +D             G+ 
Sbjct: 222 IGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYADGGKLVDARGGRQVEIADLRGIP 281

Query: 208 SQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTP--PHRMQIVH 263
           S    H        N  NA  A AA   LGL        L S       P   HRM+ V 
Sbjct: 282 SLPGAH--------NAQNAAAAYAAARALGLSPEEIAAGLAS------FPGLAHRMEQVG 327

Query: 264 RDIQGVTWVDDSKATNLEAT 283
           R   GV +V+DSKATN +A 
Sbjct: 328 R-RGGVLFVNDSKATNADAA 346

Length = 460

>gnl|CDD|219763 pfam08245, Mur_ligase_M, Mur ligase middle domain

 Score =  108 bits (271), Expect = 3e-28
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 31/192 (16%)

Query: 49  TGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSS-----KPKFQVAV 103
           TGTNGK+T    +  +L+  G     GGN  N         I LP       K     AV
Sbjct: 1   TGTNGKTTTTELIAAILSAAGGVVGTGGNTNNA--------IGLPLLLALMPKKGADYAV 52

Query: 104 VEVSSYQMEIPNKYFC--PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161
           +E+SS+ +          P ++V+ N++PDHL+ H TM+NYA  K  +F  +    + ++
Sbjct: 53  LELSSFGLGEGRLEGLAKPDIAVITNISPDHLDYHGTMENYAAAKAEIFEGLPEDGIAVI 112

Query: 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK---TASFEVPAVGVVSQLQLH----- 213
              +  L + +K     +   G      ++ EA     A+  V + G    L        
Sbjct: 113 NADDPELAKRLKNAGAKVITFG------LENEADDLRAANIYVSSEGGEIVLFTVPGGEL 166

Query: 214 --NMKVMGRHNY 223
             ++ + GRHN 
Sbjct: 167 EISLPLPGRHNV 178

Length = 178

>gnl|CDD|235162 PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  112 bits (283), Expect = 5e-28
 Identities = 86/293 (29%), Positives = 129/293 (44%), Gaps = 61/293 (20%)

Query: 21  LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHL--GIEAFVGGNL 78
           L+Q  K ++SE D+   V+P SI I   +GTNGK+T      QM  HL     A  GGN+
Sbjct: 70  LIQKAKNLISEYDYFYDVMPFSIWI---SGTNGKTTTT----QMTTHLLEDFGAVSGGNI 122

Query: 79  GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT 138
           G PL+E               ++ V+E SS+ +   NK   P + ++L +TPDHL  H +
Sbjct: 123 GTPLAEL----------DKNAKIWVLETSSFTLHYTNKAK-PNIYLLLPITPDHLSWHGS 171

Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
            +NY   K      M    + +LP   ++                        T+A+   
Sbjct: 172 FENYVKAKLKPLKRMNEGDVAILPKKFKNTP----------------------TKAQKIF 209

Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNA----AVAALSV--LGLDIGVDVEALNS-TIEI 251
           +E          +   +    + N+       A+ AL+V  +  D  +D E LN+  I  
Sbjct: 210 YE----DEEDLAEKFGID-SEKINFKGPFLLDALLALAVYKILFD-ELDYERLNAFKIG- 262

Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
                H+++   RD QG  WVDDSKATN++AT   L   K  K  ++LGG  K
Sbjct: 263 ----KHKLE-EFRDKQGRLWVDDSKATNVDATLQALKRYKDKKIHLILGGDDK 310

Length = 401

>gnl|CDD|167786 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  112 bits (281), Expect = 1e-27
 Identities = 91/318 (28%), Positives = 155/318 (48%), Gaps = 59/318 (18%)

Query: 13  LKATGLACLLQSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
            +   +    Q+G RV+ +++  A ++  R  K++A+TG+NGK+TV + VG +    G++
Sbjct: 79  ERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLD 138

Query: 72  AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPD 131
             + GN+G P+ EA    +     K    V V+E+SS+Q+E   +   PT + VLN++ D
Sbjct: 139 TVIAGNIGTPVLEAE---LQREGKKA--DVWVLELSSFQLE-NTESLRPTAATVLNISED 192

Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE------AIK--GHR---FNLA 180
           HL+R+  + +YA TK  +F             G Q LN       A+K  G     F+L 
Sbjct: 193 HLDRYDDLLDYAHTKAKIF----RGD------GVQVLNADDAFCRAMKRAGREVKWFSLE 242

Query: 181 -----WIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234
                W+    G +K   E   A+ ++P  G+                 HNAA   ++ +
Sbjct: 243 HEADFWLERETGRLKQGNEDLIATQDIPLQGL-----------------HNAA-NVMAAV 284

Query: 235 GL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG 292
            L   +G+  EAL   ++  +  PHR++ +  +  GV ++DDSK TN+ AT   +  L+ 
Sbjct: 285 ALCEAVGLPREALLEHVKTFQGLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ- 342

Query: 293 HKCVILLGGQAKVLNGQE 310
           +   ++LGG  K   GQ+
Sbjct: 343 NPLFVILGGMGK---GQD 357

Length = 445

>gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  112 bits (282), Expect = 2e-27
 Identities = 95/310 (30%), Positives = 141/310 (45%), Gaps = 49/310 (15%)

Query: 18  LACLLQSGKRVMSELDFAAQVIP--RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75
           LA    +G  V  E++ A ++    R    LAVTGTNGK+T V  +  ML   G+ A   
Sbjct: 95  LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAV 154

Query: 76  GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS----VVLNLTPD 131
           GN+G P+ +A             + V  VE+SS+Q+     ++ P+VS     VLNL PD
Sbjct: 155 GNIGTPVLDAVRD-------PEGYDVLAVELSSFQL-----HWSPSVSPHSAAVLNLAPD 202

Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLL--PFGNQHLNEA--IKGHR---FNLA---- 180
           HL+ H +M+ YA  K  ++       +  +  P     + EA  ++G R   F L     
Sbjct: 203 HLDWHGSMEAYAAAKARIYEGTTVACVYNVADPATEDLVEEADVVEGARAIGFTLGTPGP 262

Query: 181 -WIGAFPGVKID----TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235
             +G   G+ +D     + +T++ E+  +  +        +    HN  NA  AA   L 
Sbjct: 263 SQLGVVDGILVDRAFVEDRQTSALELATLEDL--------RPAAPHNIANALAAA--ALA 312

Query: 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKC 295
              GV   A+   +   R   HR++ V  D  GVTWVDDSKATN  A       L  +  
Sbjct: 313 RSFGVPPAAVRDGLRAFRPDAHRIEHVA-DADGVTWVDDSKATNPHAAAA---SLAAYPS 368

Query: 296 VILL-GGQAK 304
           V+ + GG AK
Sbjct: 369 VVWIAGGLAK 378

Length = 480

>gnl|CDD|179651 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  110 bits (276), Expect = 8e-27
 Identities = 96/318 (30%), Positives = 140/318 (44%), Gaps = 91/318 (28%)

Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G +  VGGN+G P         AL     + ++ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLP---------ALSLLDQECELYVL 157

Query: 105 EVSSYQMEIPNKYFCPTVS------VVLNLTPDHLERH-KTMKNYALTKCHLFSH----M 153
           E+SS+Q+E        T S       +LN+T DH++R+   ++ Y   K  ++ +    +
Sbjct: 158 ELSSFQLET-------TSSLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCV 210

Query: 154 VNTKLGL-LPF--------------GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
           VN    L +P               G+ HLN   +G      W+    G K+        
Sbjct: 211 VNADDALTMPIRGADKRCVSFGVNMGDYHLNRQ-QGE----TWLRV-KGEKV-------- 256

Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA-ALS-VLGLDIGVDVEALNSTIEILRT-- 254
                      L    MK+ G+HNY NA  A AL+  +G+          S+++ L T  
Sbjct: 257 -----------LNTKEMKLSGQHNYTNALAALALADAVGIP-------RASSLKALTTFT 298

Query: 255 -PPHRMQIVHRDIQGVTWVDDSKATNL---EATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
             PHR Q+V     GV W++DSKATN+   EA   GL  + G    +LLGG  K      
Sbjct: 299 GLPHRFQLVLEH-NGVRWINDSKATNVGSTEAALNGL-HVDG-TLHLLLGGDGK------ 349

Query: 311 SNGFEKLIEPLNHHRCVI 328
           S  F  L   LN     +
Sbjct: 350 SADFSPLARYLNGDNIRL 367

Length = 438

>gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  108 bits (271), Expect = 3e-26
 Identities = 73/259 (28%), Positives = 127/259 (49%), Gaps = 28/259 (10%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
           +++K +A+TGTNGKST    +  +LN  G++  V GN+G P  +A        +SK  + 
Sbjct: 102 KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVPALQAK-------ASKDGY- 153

Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
             V+E+SS+Q+++  K F   ++V+LN+TPDHL+RH+ M  Y   K  +F  M      +
Sbjct: 154 --VLELSSFQLDLV-KTFTAKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAV 210

Query: 161 LPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH--- 213
           +   N +  E      +  R  L     F   KI     +   +  +      +      
Sbjct: 211 INIDNDYCREIFIKLQQEQRIKLI---PFSVTKILENGISVVDDKISDNFFDDISFKLPF 267

Query: 214 NMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTW 271
           N  + G+HN  N  A+ A   ++G++    +E+++S     ++ PHRMQ +   I  +++
Sbjct: 268 NKNLQGKHNCENIAASYAVAKIIGVEPKKILESISS----FQSLPHRMQYIGS-INNISF 322

Query: 272 VDDSKATNLEATCTGLMDL 290
            +DSKATN  +    +  L
Sbjct: 323 YNDSKATNAISAVQSIKAL 341

Length = 454

>gnl|CDD|179323 PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  104 bits (262), Expect = 6e-25
 Identities = 84/297 (28%), Positives = 133/297 (44%), Gaps = 56/297 (18%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           + G  + SE++   +  P   K+  VTG++GK+T  T + +ML   G + +VGGN+G PL
Sbjct: 99  EEGAYITSEMEEFIKYCPA--KVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTPL 156

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
               F  I     + K    V+E+SS+Q+   +    P V+VV NL+P+HL+ HK M+ Y
Sbjct: 157 ----FSNIEEIKEEDK---VVLELSSFQLMTMDV--SPEVAVVTNLSPNHLDVHKDMEEY 207

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT-----A 197
              K ++F +     L +L   N+  N   K                   EAK      +
Sbjct: 208 IDAKKNIFKYQSENDLLVLNKDNEITNGMEK-------------------EAKGDVVKFS 248

Query: 198 SFEVPAVGVVSQ-----------LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEA 244
             E    G   +            +  ++K+ G HN  N  AA  A++    D  V +E+
Sbjct: 249 RKEKVYEGAYLKNGKLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVN---DD--VSIES 303

Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
           +           HR + V R+I GV + +DS A++   T  GL   +  K VIL+ G
Sbjct: 304 MKKVATTFSGVEHRCEFV-REINGVKYYNDSIASSPTRTLAGLKAFE--KPVILIAG 357

Length = 458

>gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  104 bits (260), Expect = 1e-24
 Identities = 81/300 (27%), Positives = 137/300 (45%), Gaps = 55/300 (18%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
           L +G  V+ +++  A  + + +  +A+TG+NGKSTV    G M    G++  VGGN+G P
Sbjct: 89  LAAGIPVVGDIELFAWAVDKPV--IAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVP 146

Query: 82  LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
                    AL   +   ++ V+E+SS+Q+E  +       +  LNL+ DH++R++ M++
Sbjct: 147 ---------ALDLLEQDAELYVLELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMED 196

Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
           Y   K  +F H    +L ++   ++                  +P    + +  T  F+ 
Sbjct: 197 YRQAKLRIFDH---AELAVVNRDDKQ----------------TYPDHA-ELQLVTFGFDQ 236

Query: 202 PAVGVVSQ-----LQLHNMKVM--------GRHNYHNAAVAALSVLGLDIGVDVEALNST 248
              G+        L  +   V+        GRHN  N     L VL L     V+     
Sbjct: 237 QDFGLAQHQGREWLADNGQPVLASAELKLVGRHNVAN----VLVVLALLDAAGVD-YRKA 291

Query: 249 IEILRT---PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAK 304
           ++ L++     HR Q+V  D  G+ WV+DSKATN+ +T   L  L+   K  +L+GG  K
Sbjct: 292 LDALKSYTGLTHRCQVV-ADNHGIKWVNDSKATNVASTLAALSGLEIEGKLYLLVGGVGK 350

Length = 438

>gnl|CDD|234662 PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  103 bits (258), Expect = 2e-24
 Identities = 82/280 (29%), Positives = 124/280 (44%), Gaps = 57/280 (20%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
           LAVTGTNGK+T    +  M+   G  A   GN+G P+S A         ++P+  V V E
Sbjct: 124 LAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNIGVPVSAAL-------VAQPRIDVLVAE 176

Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGN 165
           +SS+Q+   +    P V VVLNL  DH++ H +M++YA  K    + ++   + ++   +
Sbjct: 177 LSSFQLHW-SPTLTPDVGVVLNLAEDHIDWHGSMRDYAADK----AKVLRGPVAVIGADD 231

Query: 166 QHL------NEAIKGHRFNLA-----WIGAFPGVKIDTE---------AKTASFEVPAVG 205
           +++       +      F +       +G   G  +D           A+  S   PA G
Sbjct: 232 EYVVQLTSAADLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPA-G 290

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265
           V+  L               AA A     G+       AL S+ E+     HR Q+V   
Sbjct: 291 VLDAL---------------AAAAVARSQGVAPEAIARAL-SSFEV---AGHRGQVVAEH 331

Query: 266 IQGVTWVDDSKATNLEATCTGLMDLKGHKCVI-LLGGQAK 304
             GVTW+D+SKATN  A       L GH+ V+ + GGQ K
Sbjct: 332 -GGVTWIDNSKATNPHAADAA---LAGHESVVWVAGGQLK 367

Length = 473

>gnl|CDD|179872 PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  103 bits (258), Expect = 2e-24
 Identities = 76/279 (27%), Positives = 120/279 (43%), Gaps = 46/279 (16%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
           + VTGT GKST    +  +L   G    + GN+G PL E       + + +P  +   +E
Sbjct: 118 VCVTGTKGKSTTTALLAHLLRAAGHRTALVGNIGVPLLE-------VLAPQPAPEYWAIE 170

Query: 106 VSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH------MVNTKL 158
           +SSYQ  ++      P ++VVLNL P+HL+ H     Y   K  L +       ++N   
Sbjct: 171 LSSYQTGDVARSGARPELAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGRPRIALLNAAD 230

Query: 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA----KTASFEVPAVGVVSQLQLHN 214
             L      L ++       + W     G  +  +     + A F+   V +        
Sbjct: 231 PRL--AALQLPDS------EVVWFNHPDGWHVRGDVVYRGEQALFDTALVPLP------- 275

Query: 215 MKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ-IVHRDIQGVTW 271
               GRHN  N  A +AAL  L    G+D  AL       R  P+R+Q +  RD  G+T+
Sbjct: 276 ----GRHNRGNLCAVLAALEAL----GLDAVALAPAAAGFRPLPNRLQELGSRD--GITY 325

Query: 272 VDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
           V+DS +T   A+   L    G +  +L+GG  + L+  +
Sbjct: 326 VNDSISTTPHASLAALDCFAGRRVALLVGGHDRGLDWTD 364

Length = 468

>gnl|CDD|223841 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]

 Score = 93.5 bits (233), Expect = 5e-21
 Identities = 71/276 (25%), Positives = 124/276 (44%), Gaps = 30/276 (10%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSS----KP 97
           + K++A+TG+NGK+T    +  +L+  G      GN  N         I LP +      
Sbjct: 102 NAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNE--------IGLPLTLLRLPA 153

Query: 98  KFQVAVVEVS-SYQMEIPN--KYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV 154
             + AV+E+  ++  EI    +   P ++V+ N+   HLE   + +  A  K  + + + 
Sbjct: 154 DTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLR 213

Query: 155 NTKLGLLPFGNQHL-NEAIKG-----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVS 208
              + +L   N  L N A K        F L   G F    I  + + +SF +   G  +
Sbjct: 214 PEGIAILNADNPLLKNWAAKIGNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEA 273

Query: 209 QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG 268
           + +L    + GRHN  NA  AA   L L++G+D+E + + ++ L+    R++++     G
Sbjct: 274 EFEL---PLPGRHNVTNALAAAA--LALELGLDLEEIAAGLKELKPVKGRLEVILLAN-G 327

Query: 269 VTWVDDSKATNLEATCTG---LMDLKGHKCVILLGG 301
            T +DDS   N ++       L  L G K + +LG 
Sbjct: 328 KTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGD 363

Length = 451

>gnl|CDD|234660 PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional

 Score = 92.9 bits (232), Expect = 7e-21
 Identities = 66/274 (24%), Positives = 105/274 (38%), Gaps = 48/274 (17%)

Query: 26  KRVMSELDFAAQV---IPRSIKILAVTGTNGKSTVVTFVGQMLNHLG--------IEAFV 74
           ++ ++ L  AA         +K++ VTGTNGK+T    + Q+L  LG        +   +
Sbjct: 77  RKALALL--AAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNGI 134

Query: 75  GGNL---GN--PLSEAAFHCIALPSSKPKFQVAVVEVSS--------YQMEIPNKYFCPT 121
           GG L   G   P +      +A          A +EVSS          ++         
Sbjct: 135 GGELIPSGLTTPDALDLQRLLAELVDA-GVTYAAMEVSSHALDQGRVDGLKF-------D 186

Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLN-EAIKGHRFN-L 179
           V+V  NL+ DHL+ H TM++Y   K  LFS +    +         +N +   G R   L
Sbjct: 187 VAVFTNLSRDHLDYHGTMEDYLAAKARLFSELGLAAV---------INADDEVGRRLLAL 237

Query: 180 AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239
               A      D  A    +           ++    ++GR N  N   A  ++L L  G
Sbjct: 238 PDAYAVSMAGADLRATDVEYTDSGQTFTLVTEVE-SPLIGRFNVSNLLAALAALLAL--G 294

Query: 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
           V +E   + +  L+  P RM+ V      +  VD
Sbjct: 295 VPLEDALAALAKLQGVPGRMERVDAGQGPLVIVD 328

Length = 460

>gnl|CDD|233265 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 71/254 (27%), Positives = 111/254 (43%), Gaps = 36/254 (14%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLG--------IEAFVGGN--LGNPLSEAAFHCI 90
           + +K++ VTGTNGK+T  + + Q+L  LG        I   +GGN  + NP +      +
Sbjct: 83  KKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEAL 142

Query: 91  ALPSSKPKF-----QVAVVEVSSYQMEIPNKYFCPTVSVVL-NLTPDHLERHKTMKNYAL 144
            L S+  +      Q AV+EVSS+ +           + V  NL+ DHL+ H TM+NY  
Sbjct: 143 TLQSTLAEMVEAGAQYAVMEVSSHALAQGRVRGVRFDAAVFTNLSRDHLDFHGTMENYFA 202

Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK--------- 195
            K  LF     T+LGL  F   +L++   G +F            I   A          
Sbjct: 203 AKASLF-----TELGLKRFAVINLDDEY-GAQFVKRLPKDITVSAITQPADGRAQDIKIT 256

Query: 196 --TASFEVPAVGVVSQLQLHNMKV--MGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
               SFE       +     ++    +GR N +N   A  ++L L  G+D+E + + +E 
Sbjct: 257 DSGYSFEGQQFTFETPAGEGHLHTPLIGRFNVYNLLAALATLLHL-GGIDLEDIVAALEK 315

Query: 252 LRTPPHRMQIVHRD 265
            R  P RM++V   
Sbjct: 316 FRGVPGRMELVDGG 329

Most members of this family are EC 6.3.2.13, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase. An exception is Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is EC 6.3.2.7. The Mycobacteria, part of the closest neighboring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 464

>gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

 Score = 88.1 bits (219), Expect = 4e-19
 Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 40/252 (15%)

Query: 43  IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIAL--PSS----- 95
           +K++ VTGTNGK+T  + + Q+L  LG +  + G  G+ LS        L  P +     
Sbjct: 91  LKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQN 150

Query: 96  ------KPKFQVAVVEVSSYQMEIPNKYFCP-TVSVVLNLTPDHLERHKTMKNYALTKCH 148
                     ++AV+EVSS+ +           V V  NL+ DHL+ H TM+ Y   K  
Sbjct: 151 LLRDLLDRGAEIAVMEVSSHGLVQGRVEGVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAV 210

Query: 149 LFSHMVNTKLGLL----PFGNQHLNEA-----------IKGHRFNLAWIGAFPGVKIDTE 193
           LF  + ++   ++      G  +                   R +L + G      I+  
Sbjct: 211 LFESLPHSGEAVINPDDGHGLDYKERLKNALGDYITYGCDFKRPDLDYRG------IEES 264

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
           +  + F     G + +     + + G  N +NA  A  + L L  GVD+E + + +E L+
Sbjct: 265 SSGSDFVFEPSGGIGEY---ELPLPGLFNVYNALAAVAAALAL--GVDLEDILAGLETLK 319

Query: 254 TPPHRMQIVHRD 265
             P RM++V+  
Sbjct: 320 PVPGRMELVNIG 331

Length = 475

>gnl|CDD|179086 PRK00683, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score = 87.6 bits (217), Expect = 4e-19
 Identities = 68/265 (25%), Positives = 111/265 (41%), Gaps = 51/265 (19%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
           L +TG+ GK+T + F+  +L  LGI AF  GN+G P+ +                V VVE
Sbjct: 105 LGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIPILDGMQQP----------GVRVVE 154

Query: 106 VSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
           +SS+Q+ +    Y   +  ++LN++ +HL+ H  +  Y   K ++   + N         
Sbjct: 155 ISSFQLADQEKSYPVLSGGMILNISDNHLDYHGNLSAYFQAKQNIAKCLRNPD------- 207

Query: 165 NQHLNEAIKGHRFNLAWIG--AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
                           W+G     G       +     +     +  L LH+     R+N
Sbjct: 208 --------------DLWVGDERSYGHSYLEYVQEIMRLLDKGSALKPLYLHD-----RYN 248

Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDDSKATN 279
           Y  A   A  V  +       +  S +E + T   PPHRM+ +     GV +++DSKAT 
Sbjct: 249 YCAAYALANEVFPI-------SEESFLEAVATFEKPPHRMEYLGEK-DGVHYINDSKATT 300

Query: 280 LEATCTGLMDLKGHKCVILLGGQAK 304
           + A    L+ +     VI LGG+ K
Sbjct: 301 VSAVEKALLAVGNQVIVI-LGGRNK 324

Length = 418

>gnl|CDD|233291 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

 Score = 84.6 bits (210), Expect = 4e-18
 Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 46/268 (17%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN----PLSEAAFHCIALPSSKP 97
           S K++ +TG++GK+T    +  +L+H        GN  N    PL+        L  +  
Sbjct: 73  SGKVIGITGSSGKTTTKEMLAAILSHKYKVVATPGNFNNEIGLPLT--------LLRAPG 124

Query: 98  KFQVAVVEVS-SYQMEIPNKYFC----PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH 152
               AV+E+  S+  EI   Y      P ++V+ N+ P HLE   +++  A  K  +   
Sbjct: 125 DHDYAVLEMGASHPGEI--AYLAEIAKPDIAVITNIGPAHLEGFGSLEGIAEAKGEILQG 182

Query: 153 MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT------EAKTASFEVPAVGV 206
           +    + ++   +    +          +    P   I +      + + A     A+G 
Sbjct: 183 LKENGIAVINADDPAFLD----------FAKRLPNRNILSFGFEGGDFRAADISYSALGS 232

Query: 207 VS-QLQLHNMK------VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
            S  L     +      ++GRHN  NA  AA   L L++G+ +E +   +  L+    R 
Sbjct: 233 TSFTLVTPGGEFEVSLPLLGRHNVMNALAAA--ALALELGIPLEEIAEGLAELKLVKGRF 290

Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGL 287
           +I  R   G+T +DD+   N ++    L
Sbjct: 291 EIQTR--NGLTLIDDTYNANPDSMRAAL 316

This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 417

>gnl|CDD|179571 PRK03369, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score = 82.9 bits (205), Expect = 2e-17
 Identities = 80/261 (30%), Positives = 111/261 (42%), Gaps = 53/261 (20%)

Query: 40  PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKF 99
           PR  + L VTGTNGK+T  + +  ML   G  + + GN+G+P+         L       
Sbjct: 116 PR--RWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNIGSPV---------LDVLDEPA 164

Query: 100 QVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL 158
           ++  VE+SS+Q+   P+    P    VLN+  DHL+ H TM  YA  K    +  V   +
Sbjct: 165 ELLAVELSSFQLHWAPS--LRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALTGRVAV-V 221

Query: 159 GL-LPFGNQHLNEAIK----GHRFNLAWIGAFPGVK----ID-------TEAKTASFEVP 202
           GL        L+ A      G R      G   GV+    +D         A  AS  VP
Sbjct: 222 GLDDSRAAALLDTAPAPVRVGFRLGEPAAGEL-GVRDGHLVDRAFADDLRLAPVASIPVP 280

Query: 203 A-VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
             VGV+  L                A AAL+     +GV   A+   +   R   HR ++
Sbjct: 281 GPVGVLDAL----------------AAAALA---RAVGVPAGAIADALASFRVGRHRAEV 321

Query: 262 VHRDIQGVTWVDDSKATNLEA 282
           V     G+T+VDDSKATN  A
Sbjct: 322 VAV-ADGITYVDDSKATNPHA 341

Length = 488

>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 66/253 (26%), Positives = 93/253 (36%), Gaps = 49/253 (19%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKP---- 97
            + ++AVTGTNGK++    + Q+L  LG      G LG  L       I    + P    
Sbjct: 111 QLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGARLDG---RLIPGSLTTPDAII 167

Query: 98  -----------KFQVAVVEVSSYQMEIPNKYFCPTVSVVL--NLTPDHLERHKTMKNYAL 144
                            +E SS+ +E   +     ++V    NLT DHL+ H TM++Y  
Sbjct: 168 LHRILARMRAAGADAVAMEASSHGLEQ-GRLDGLRIAVAGFTNLTRDHLDYHGTMQDYEE 226

Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA------WIGAFPG-VKIDTEAKTA 197
            K  LFS        L   G   +N         LA       +G  P     D +A   
Sbjct: 227 AKAALFSK-------LPGLGAAVINADDPAAARLLAALPRGLKVGYSPQNAGADVQA--R 277

Query: 198 SFEVPAVGVVSQLQLHN------MKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTI 249
                A G V  L   +       +++GR N  N     AAL  LGL +     AL    
Sbjct: 278 DLRATAHGQVFTLATPDGSYQLVTRLLGRFNVSNLLLVAAALKKLGLPLAQIARAL---- 333

Query: 250 EILRTPPHRMQIV 262
             +   P RM+ V
Sbjct: 334 AAVSPVPGRMERV 346

Length = 958

>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 60/285 (21%), Positives = 104/285 (36%), Gaps = 42/285 (14%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV---GGNLGN----PLSEAAFHCIALPS 94
           S+ ++A+TG+NGK+T    +  +L     E  V    GN  N    PL+        L  
Sbjct: 602 SLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLT--------LLR 653

Query: 95  SKPKFQVAVVEV---SSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151
            + + + AV E+      ++        PTV++V N   +H E   +++  A  K  + +
Sbjct: 654 LRAQHRAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIA 713

Query: 152 HMVNTKLGLLPFGNQHLNEAIKGH------RFNLAWIGAFPGVKIDT-----EAKTASFE 200
            +    + ++   + +     K        RF L         KI       EA     +
Sbjct: 714 ALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADVYAEKIAKDISVGEAGGTRCQ 773

Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
           V      +++ L    ++G HN  N  AA+A     G  +      L       +    R
Sbjct: 774 VVTPAGSAEVYL---PLIGEHNLRNALAAIACALAAGASLKQIRAGLER----FQPVAGR 826

Query: 259 MQIVHRDIQGVTWVDDSKATN---LEATCTGLMDLKGHKCVILLG 300
           MQ       G   +DD+   N   + A    L +L      ++LG
Sbjct: 827 MQRRRLS-CGTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLG 870

Length = 958

>gnl|CDD|130153 TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 78/276 (28%), Positives = 119/276 (43%), Gaps = 49/276 (17%)

Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGNPLSEAAFHCIALPSSKPKFQVA 102
           +LAV GT+GK+T  + +  +L   G++    +GG  GN      F   A     P F   
Sbjct: 104 VLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGN------FGVSARLGESPFF--- 154

Query: 103 VVEVSSYQMEIPNK-----YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157
           V+E   Y     +K     ++ P   V+ NL  DH +    +K  A+ +   F H+V T 
Sbjct: 155 VIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLK--AIQR--QFHHLVRTV 210

Query: 158 LG----LLPFGNQHLNEAI-KGHRFNLAWIGA---FPGVKIDTEAKTASFEV----PAVG 205
            G    L P  +Q L + + KG      + G    +   KI  +   + F+V      VG
Sbjct: 211 PGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQGEWQAEKITADG--SHFDVLLDGEKVG 268

Query: 206 VVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
            V         ++GRHN HNA  A+AA   +G+ I    EAL S +   R    R+++  
Sbjct: 269 EV------KWSLVGRHNMHNALMAIAAARHVGVAIEDACEALGSFVNAKR----RLEL-K 317

Query: 264 RDIQGVTWVDD--SKATNLEATCTGLMDLKGHKCVI 297
            +  G+T  DD     T +EAT  GL    G   ++
Sbjct: 318 GEANGITVYDDFAHHPTAIEATLQGLRQKVGGARIL 353

Alternate name: murein tripeptide ligase [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 448

>gnl|CDD|223844 COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 52/251 (20%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
           +AV GT+GK+T  + +  +L   G++    +GG L N  + A      L S    F   V
Sbjct: 110 IAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKNFGTNAR-----LGSGDY-F---V 160

Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
            E           ++ P V++V N+  DHL+ +  ++         F H V      +PF
Sbjct: 161 AEADESDSSF--LHYNPRVAIVTNIEFDHLDYYGDLEAIK----QAFHHFVRN----VPF 210

Query: 164 GN--------QHLNEAIKG------HRFNLAWIGAFPGVKIDTEAKTASFEV----PAVG 205
                      +L E +          +       +    I  +    +F+V      +G
Sbjct: 211 YGRAVVCGDDPNLRELLSRGCWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGEELG 270

Query: 206 VVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
            V       + + GRHN  NA  A+A    LG+D     EAL S   + R    R ++  
Sbjct: 271 EV------KLPLPGRHNVLNALAAIAVARELGIDPEAIAEALASFQGVKR----RFELK- 319

Query: 264 RDIQGVTWVDD 274
            ++ GVT +DD
Sbjct: 320 GEVNGVTVIDD 330

Length = 459

>gnl|CDD|237588 PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 70/263 (26%), Positives = 107/263 (40%), Gaps = 46/263 (17%)

Query: 26  KRVMSELDFAAQVIPR-SIKILAVTGTNGKSTVVTFVGQMLNHLGI-------------E 71
           K+ MS +       P+  +K+LA TGT GK+T   F   +L  L               E
Sbjct: 92  KKAMSLIAMEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGE 151

Query: 72  AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY---FCPTVSVVLNL 128
            F    L  P S   F  +A  +        ++EVSS    +   Y   F   V V LN+
Sbjct: 152 TFFKSALTTPESLDLFKMMA-EAVDNGMTHLIMEVSSQAYLVGRVYGLTF--DVGVFLNI 208

Query: 129 TPDHLE--RHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE-----AIKGHRFNLAW 181
           TPDH+    H T ++Y   K  L     N+K  ++     H +E       + H F    
Sbjct: 209 TPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSELLEQVTPQEHDF---- 261

Query: 182 IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH-NMKVMGRHNYHNAAVAALSVLGLDIGV 240
            G     +I   +   SFE        +L    +++++G+ N  NA  A L+ L L  G 
Sbjct: 262 YGIDSENQI-MASNAFSFEATG-----KLAGTYDIQLIGKFNQENAMAAGLACLRL--GA 313

Query: 241 DVEALNSTIEILRTP-PHRMQIV 262
            +E +   I   +TP P RM+++
Sbjct: 314 SLEDIQKGIA--QTPVPGRMEVL 334

Length = 481

>gnl|CDD|233264 TIGR01082, murC, UDP-N-acetylmuramate--alanine ligase

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 50/240 (20%), Positives = 92/240 (38%), Gaps = 29/240 (12%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
           +AV GT+GK+T    +  +L   G++    VGG +       A     L S +      V
Sbjct: 102 IAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVK-----EAGTNARLGSGEY----LV 152

Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLP 162
            E         +    P V++V N+ PDHL+ +  + +           ++    L ++ 
Sbjct: 153 AEADESDASFLH--LQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGLAVIC 210

Query: 163 FGNQHLNEAIKGHRFNLAWIGAFPGVK-----IDTEAKTASFEVPAVGVVSQLQLHN--- 214
             +  L E +              G        + +   A  +     V  + +L+    
Sbjct: 211 ADDPVLRELVPK-ATEQVITYGGSGEDADYRAENIQQSGAEGK---FSVRGKGKLYLEFT 266

Query: 215 MKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDD 274
           + + GRHN  NA  A    + L++G+D EA+   +   +    R +I+  +  GV  +DD
Sbjct: 267 LNLPGRHNVLNALAAIA--VALELGIDFEAILRALANFQGVKRRFEIL-GEFGGVLLIDD 323

This model describes the MurC protein in bacterial peptidoglycan (murein) biosynthesis. In a few species (Mycobacterium leprae, the Chlamydia), the amino acid may be L-serine or glycine instead of L-alanine. A related protein, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase (murein tripeptide ligase) is described by model TIGR01081 [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 448

>gnl|CDD|234757 PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 48/220 (21%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
           +AV GT+GK+T  + +  +L   G++    +GG L    + A      L +S       V
Sbjct: 110 IAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILNAAGTNA-----RLGNSD----YFV 160

Query: 104 VEV----SSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG 159
            E      S+      K   P +++V N+  DHL+ +   ++        F    +    
Sbjct: 161 AEADESDRSF-----LKLH-PDIAIVTNIDADHLDYYGDFEDLKDA----FQEFAH---- 206

Query: 160 LLPFG--------NQHLNEAIKGHRFNLAWIG-----AFPGVKIDTEAKTASFEVPAVG- 205
            LPF         +  L E +      +   G      F    I  +     F+V   G 
Sbjct: 207 NLPFYGALVACGDDPELRELLPRVSRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGE 266

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
           V+    L    + GRHN  N A+AA++V  L++G+D EA+
Sbjct: 267 VLGDFTLP---LPGRHNVLN-ALAAIAV-ALELGIDDEAI 301

Length = 461

>gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 57/247 (23%), Positives = 100/247 (40%), Gaps = 30/247 (12%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-AFVGGNLGN 80
              G R++   +  A+++   I IL V+G++GK+TV + +  +      + ++  G L  
Sbjct: 84  KSRGNRLVHRAELLAELMQEQISIL-VSGSHGKTTVSSLITAIFQEAKKDPSYAIGGLNQ 142

Query: 81  PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
                    +   S   ++ VA  + S   +    K++ P  SV+ N+  +HL   +  +
Sbjct: 143 -------EGLNGYSGSSEYFVAEADESDGSL----KHYTPEFSVITNIDNEHLSNFEGDR 191

Query: 141 NYALTKCHLFSHMVNTKLGLLPFGN-QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
              L     F+  V         G+   L   ++GH +  +       +    E   + F
Sbjct: 192 ELLLASIQDFARKVQQINKCFYNGDCPRLKGCLQGHSYGFSSSCDLHILSYYQEGWRSYF 251

Query: 200 EVPAVGVVSQ---LQLHNMKVMGRHNYHNAAVA---ALSVLGLDIGVDVEALNSTIEILR 253
               +GVV Q   L L     +G HN  NAA A   AL+ LG+D G    AL     + R
Sbjct: 252 SAKFLGVVYQDIELNL-----VGMHNVANAAAAMGIALT-LGIDEGAIRNALKGFSGVQR 305

Query: 254 TPPHRMQ 260
               R++
Sbjct: 306 ----RLE 308

Length = 809

>gnl|CDD|237026 PRK11930, PRK11930, putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 43/131 (32%)

Query: 43  IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV--------GGNLGNPLS----------- 83
           I ++ +TG+NGK    T V + L  L    +            +G PLS           
Sbjct: 107 IPVIGITGSNGK----TIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQLNEEHELG 162

Query: 84  --EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
             EA         S+P            +ME   K   PT+ ++ N+   H E  +++K 
Sbjct: 163 IFEAGI-------SQPG-----------EMEALQKIIKPTIGILTNIGGAHQENFRSIKQ 204

Query: 142 YALTKCHLFSH 152
             + K  LF  
Sbjct: 205 KIMEKLKLFKD 215

Length = 822

>gnl|CDD|217262 pfam02875, Mur_ligase_C, Mur ligase family, glutamate ligase domain

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 255 PPHRMQIVHRDIQGVTWVDDSKATN---LEATCTGLMDLKGHKCVILLGG 301
            P R+++V     GV  +DD  A N   +EA    L +L     +IL+ G
Sbjct: 1   VPGRLEVVGEG-NGVLVIDD-YAHNPDAMEAALRALRNLFPQGRLILVFG 48

This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyze consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesised by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	363
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	100.0
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	100.0
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
TIGR01081	448	mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl	100.0
PRK10773	453	murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a	100.0
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	100.0
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	100.0
COG0770	451	MurF UDP-N-acetylmuramyl pentapeptide synthase [Ce	100.0
TIGR01143	417	murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a	100.0
COG0773	459	MurC UDP-N-acetylmuramate-alanine ligase [Cell env	100.0
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK14093	479	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminop	100.0
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	100.0
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK11929	958	putative bifunctional UDP-N-acetylmuramoylalanyl-D	100.0
PRK11930	822	putative bifunctional UDP-N-acetylmuramoyl-tripept	100.0
PRK00139	460	murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-d	100.0
TIGR01085	464	murE UDP-N-acetylmuramyl-tripeptide synthetase. A	100.0
PRK14022	481	UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine l	100.0
PRK11929	958	putative bifunctional UDP-N-acetylmuramoylalanyl-D	100.0
TIGR01499	397	folC folylpolyglutamate synthase/dihydrofolate syn	100.0
TIGR02068	864	cya_phycin_syn cyanophycin synthetase. Cyanophycin	100.0
PLN02913	510	dihydrofolate synthetase	100.0
COG0285	427	FolC Folylpolyglutamate synthase [Coenzyme metabol	100.0
COG0769	475	MurE UDP-N-acetylmuramyl tripeptide synthase [Cell	100.0
PRK10846	416	bifunctional folylpolyglutamate synthase/ dihydrof	100.0
PLN02881	530	tetrahydrofolylpolyglutamate synthase	100.0
PRK14016	727	cyanophycin synthetase; Provisional	100.0
PF08245	188	Mur_ligase_M: Mur ligase middle domain; InterPro:	100.0
KOG2525	496	consensus Folylpolyglutamate synthase [Coenzyme tr	99.97
PF02875	91	Mur_ligase_C: Mur ligase family, glutamate ligase	99.33
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.46
PRK09435	332	membrane ATPase/protein kinase; Provisional	94.25
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	92.7
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	92.63
PRK15453	290	phosphoribulokinase; Provisional	91.87
TIGR03172	232	probable selenium-dependent hydroxylase accessory	91.16
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	89.88
PRK06696	223	uridine kinase; Validated	89.85
PRK07667	193	uridine kinase; Provisional	89.14
PHA02519	387	plasmid partition protein SopA; Reviewed	89.05
PRK13869	405	plasmid-partitioning protein RepA; Provisional	88.8
COG0132	223	BioD Dethiobiotin synthetase [Coenzyme metabolism]	88.79
PRK00652	325	lpxK tetraacyldisaccharide 4'-kinase; Reviewed	88.69
PRK13705	388	plasmid-partitioning protein SopA; Provisional	88.51
PHA02518	211	ParA-like protein; Provisional	88.4
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	88.32
TIGR03029	274	EpsG chain length determinant protein tyrosine kin	88.3
cd02117	212	NifH_like This family contains the NifH (iron prot	87.76
cd03114	148	ArgK-like The function of this protein family is u	87.68
COG2894	272	MinD Septum formation inhibitor-activating ATPase	87.62
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	87.51
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	87.12
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	87.1
COG0769	475	MurE UDP-N-acetylmuramyl tripeptide synthase [Cell	86.88
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	86.74
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	86.59
PRK13232	273	nifH nitrogenase reductase; Reviewed	86.5
TIGR03453	387	partition_RepA plasmid partitioning protein RepA.	86.17
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	85.9
PRK05439	311	pantothenate kinase; Provisional	85.87
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	85.86
COG2403	449	Predicted GTPase [General function prediction only	85.54
cd03116	159	MobB Molybdenum is an essential trace element in t	85.53
TIGR03018	207	pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t	85.27
COG4240	300	Predicted kinase [General function prediction only	85.25
cd02040	270	NifH NifH gene encodes component II (iron protein)	85.03
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	84.51
TIGR00064	272	ftsY signal recognition particle-docking protein F	84.37
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	84.36
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	84.23
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	84.09
PRK13230	279	nitrogenase reductase-like protein; Reviewed	84.09
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	83.88
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	83.79
cd02032	267	Bchl_like This family of proteins contains bchL an	83.57
PRK14974	336	cell division protein FtsY; Provisional	83.47
PRK00784	488	cobyric acid synthase; Provisional	83.26
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	83.17
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	83.1
TIGR02016	296	BchX chlorophyllide reductase iron protein subunit	82.96
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	82.87
PRK13235	274	nifH nitrogenase reductase; Reviewed	82.82
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	82.74
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	82.23
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	82.19
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	81.97
PRK13233	275	nifH nitrogenase reductase; Reviewed	81.86
PRK03846	198	adenylylsulfate kinase; Provisional	81.81
PRK10416	318	signal recognition particle-docking protein FtsY;	81.62
cd03109	134	DTBS Dethiobiotin synthetase (DTBS) is the penulti	81.6
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	81.56
TIGR01287	275	nifH nitrogenase iron protein. This model describe	81.5
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	81.38
PRK12374	231	putative dithiobiotin synthetase; Provisional	81.21
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	80.98
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	80.9
PF13500	199	AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R	80.72
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	80.65
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	80.39
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	80.31
PRK05480	209	uridine/cytidine kinase; Provisional	80.27
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	80.17
PRK11670	369	antiporter inner membrane protein; Provisional	80.12

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.9e-61  Score=463.62  Aligned_cols=315  Identities=26%  Similarity=0.412  Sum_probs=267.7

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~   83 (363)
                      ++|.||.+|++||.+++|+..|+++++++|+++|.. ...|+|+|||||||||||+||++||++.|.++.++||||.|..
T Consensus        72 ~vV~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l  150 (448)
T COG0771          72 LVVKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPAL  150 (448)
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHH
Confidence            579999999999999999999999999999999986 3567999999999999999999999999999999999999998


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017957           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (363)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~  163 (363)
                      .....       ..+.|++|+|+||+||+.+.. ++|++++||||++||||||+|+|+|+.+|.+|++++.+  ++|+|.
T Consensus       151 ~~~~~-------~~~~d~~VlElSSfQL~~~~~-~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vin~  220 (448)
T COG0771         151 ELLEQ-------AEPADVYVLELSSFQLETTSS-LRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVINA  220 (448)
T ss_pred             Hhhcc-------cCCCCEEEEEccccccccCcc-CCccEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCcc--EEEEeC
Confidence            76542       456789999999999999887 99999999999999999999999999999999998665  999999


Q ss_pred             CChhHHHHHhc-CCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCH
Q 017957          164 GNQHLNEAIKG-HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV  242 (363)
Q Consensus       164 dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~  242 (363)
                      ||+++..+... ....+.+|+.................  ..+ ...+....++++|.||++|+++|+  |+|+.+|+++
T Consensus       221 dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~--~~~-~~i~~~~~l~l~G~hn~~N~lAa~--a~a~~~gv~~  295 (448)
T COG0771         221 DDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKLV--FKG-EKLLPADELKLPGAHNLENALAAL--ALARALGVPP  295 (448)
T ss_pred             CcHHHhhhhhhcccceeEEEEccccccccceeecchhc--ccc-ccccchhhcCCcchhhHHHHHHHH--HHHHHcCCCH
Confidence            99999888765 34456677654332100000000000  011 112223478999999999999999  8999999999


Q ss_pred             HHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhhcc
Q 017957          243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN  322 (363)
Q Consensus       243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~  322 (363)
                      +.|.++|.+|+++|||||.+. +.+|+.|||||+|+|++|+..||+.++ +|+++|+||.++.++      +..+.+.++
T Consensus       296 e~i~~~L~~F~gl~HR~e~v~-~~~gv~f~NDSKATN~~At~~AL~~~~-~~v~lI~GG~~Kg~d------f~~L~~~~~  367 (448)
T COG0771         296 EAILEALSSFTGLPHRLEFVG-EKDGVLFINDSKATNVDATLAALSGFD-GPVILIAGGDDKGAD------FSPLAEILA  367 (448)
T ss_pred             HHHHHHHHhCCCCCcceEEEE-ecCCEEEecCCCCCCHHHHHHHHHcCC-CCEEEEECCCCCCCC------hhHHHHHhh
Confidence            999999999999999999998 689999999999999999999999998 689999999999865      667999888


Q ss_pred             c-CcEEEEEcccchHHHHhhCC
Q 017957          323 H-HRCVITVCALLFLKIVIQFP  343 (363)
Q Consensus       323 ~-~~~vi~~G~~~~~~~~~~~~  343 (363)
                      + ...+|++|+.. .++.+.+.
T Consensus       368 ~~~~~~~~~G~~~-~~i~~~l~  388 (448)
T COG0771         368 KVIKKLVLIGEDA-EKIAAALK  388 (448)
T ss_pred             hcceEEEEeCCCH-HHHHHHHH
Confidence            6 67799999996 57777664

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=100.00  E-value=1.2e-57  Score=449.35  Aligned_cols=311  Identities=23%  Similarity=0.418  Sum_probs=260.5

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~   83 (363)
                      ++|+||+++++||++++|+++|+|+++++|++++.+  +.++|+||||||||||++||+++|+.+|.++.++||+|.|..
T Consensus        65 ~vv~sp~i~~~~p~~~~a~~~~i~i~~~~e~~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~~~  142 (433)
T TIGR01087        65 LVVKSPGIPPDHPLVQAAAKRGIPVVGDIELFLRLV--PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTPAL  142 (433)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHHHH
Confidence            689999999999999999999999999999998887  568999999999999999999999999999999999999954


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017957           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (363)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~  163 (363)
                      ....        ..+.|++|+|+|+++++.+.. ++|+++|||||++||+|+|||+|+|+++|.++++.+++++.+|+|.
T Consensus       143 ~~~~--------~~~~~~~V~E~~~~~l~~~~~-~~p~iaViTNI~~DHld~~gs~e~~~~~K~~i~~~~~~~~~~i~n~  213 (433)
T TIGR01087       143 EVLD--------QEGAELYVLELSSFQLETTES-LRPEIALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLNA  213 (433)
T ss_pred             HHHh--------ccCCCEEEEEcChhHhcCCcc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence            3321        145789999999999886655 8999999999999999999999999999999999988889999999


Q ss_pred             CChhHHHHHhcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHH
Q 017957          164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE  243 (363)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~  243 (363)
                      ||+.+..+......++++|+...+..       ..+.....+..+......++++|.||++|+++|+  +++..+|++++
T Consensus       214 dd~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi~~~  284 (433)
T TIGR01087       214 DDPRFARLAQKSKAQVIWFSVEKDAE-------RGLCIRDGGLYLKPNDLEGSLLGLHNAENILAAI--ALAKSLGLNLE  284 (433)
T ss_pred             CCHHHHHhhhhcCceEEEEeCCccCC-------CceEEECCEEEEeccccccCCCcHHHHHHHHHHH--HHHHHcCCCHH
Confidence            99987776655556788888542111       0111111111111112478999999999999999  89999999999


Q ss_pred             HHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhhccc
Q 017957          244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH  323 (363)
Q Consensus       244 ~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~~  323 (363)
                      +|+++|++|+++|||||++. ..+++++|||+++|||+|+.++++.++. ++++|+|++.+.++      ++++.+.+..
T Consensus       285 ~i~~~L~~f~g~~~R~e~v~-~~~g~~~idD~~atn~~a~~~al~~~~~-~ii~I~Gg~~~~~d------~~~~~~~l~~  356 (433)
T TIGR01087       285 AILEALRSFKGLPHRLEYVG-QKNGVHFYNDSKATNVHATLAALSAFDN-PVILIVGGDDKGAD------FSPLAPAAAG  356 (433)
T ss_pred             HHHHHHHhCCCCCCceEEEE-EECCEEEEEcCCCCCHHHHHHHHHhCCC-CEEEEEcCCCCCCC------HHHHHHHHHh
Confidence            99999999999999999996 4678999999999999999999999964 78999999887644      6678887764


Q ss_pred             -CcEEEEEcccchHHHHhhCC
Q 017957          324 -HRCVITVCALLFLKIVIQFP  343 (363)
Q Consensus       324 -~~~vi~~G~~~~~~~~~~~~  343 (363)
                       .+.++++|+.. ..+.+.+.
T Consensus       357 ~~~~v~~~G~~~-~~l~~~~~  376 (433)
T TIGR01087       357 KVKAVLAIGEDA-AKIAPLLK  376 (433)
T ss_pred             hCCEEEEECCCH-HHHHHHHH
Confidence             67899999986 56777664

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1.4e-57  Score=448.92  Aligned_cols=314  Identities=25%  Similarity=0.354  Sum_probs=257.6

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~   83 (363)
                      ++|.||+++++||++++|+++|+|+++++|++++.. ++.++|+||||||||||++||++||+.+|.++.++||+|.|..
T Consensus        66 ~vV~SPgI~~~~p~~~~a~~~gi~v~~e~el~~~~~-~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~p~l  144 (454)
T PRK01368         66 KIVLSPGIPLTHEIVKIAKNFNIPITSDIDLLFEKS-KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVPAL  144 (454)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCceecHHHHHHHHh-cCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCHHHh
Confidence            689999999999999999999999999999998876 3568999999999999999999999999999999999999975


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017957           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (363)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~  163 (363)
                      ..          ..+.+++|+|+|++|++.... ++|+++|||||++||+|||+|+|+|+.+|.+|++++++++.+|+|.
T Consensus       145 ~~----------~~~~~~~VlE~ss~ql~~~~~-~~P~iavitNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~  213 (454)
T PRK01368        145 QA----------KASKDGYVLELSSFQLDLVKT-FTAKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVINI  213 (454)
T ss_pred             cc----------cCCCCEEEEEcCchhhccccc-cCCCEEEEecCChhHhhccCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence            32          223588999999999987654 8999999999999999999999999999999999988889999999


Q ss_pred             CChhHHHHHhc----CCccEEEeccCCCce--eccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHH
Q 017957          164 GNQHLNEAIKG----HRFNLAWIGAFPGVK--IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD  237 (363)
Q Consensus       164 dd~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~  237 (363)
                      ||+.+..+...    ...++++|+......  +........+.+.. ..... ..+.++++|.||++|+++|+  +++..
T Consensus       214 Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~l~G~hn~~Na~aAi--a~~~~  289 (454)
T PRK01368        214 DNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFD-DISFK-LPFNKNLQGKHNCENIAASY--AVAKI  289 (454)
T ss_pred             CcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecC-CcceE-EEecCCCCchhhHHHHHHHH--HHHHH
Confidence            99988776532    223677887532110  00000001111100 10111 12357899999999999999  88999


Q ss_pred             cCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhh
Q 017957          238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL  317 (363)
Q Consensus       238 lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l  317 (363)
                      +|++.+.|+++|.+|+++|||||++. +.+++++||||+||||+|+++++++++  ++++|+|++++.+      +++.|
T Consensus       290 lgi~~~~i~~~L~~F~~~~~Rle~v~-~~~gv~~i~DS~atN~~a~~~al~~~~--~i~lI~Gg~dk~~------~~~~L  360 (454)
T PRK01368        290 IGVEPKKILESISSFQSLPHRMQYIG-SINNISFYNDSKATNAISAVQSIKALD--NIYWLAGGIPKEG------GIEEI  360 (454)
T ss_pred             cCCCHHHHHHHHHhCCCCCcceEEEE-EECCeEEEECCCCCCHHHHHHHHHhcC--CeEEEecccCCCC------CHHHH
Confidence            99999999999999999999999997 468899999999999999999999995  6899999997653      47788


Q ss_pred             hhhcccCcEEEEEcccchHHHHhhCC
Q 017957          318 IEPLNHHRCVITVCALLFLKIVIQFP  343 (363)
Q Consensus       318 ~~~l~~~~~vi~~G~~~~~~~~~~~~  343 (363)
                      .+.+.++..+++.|+.. ..+.+.+.
T Consensus       361 ~~~~~~v~~v~~~g~~~-~~l~~~~~  385 (454)
T PRK01368        361 KPYFSKIKKAYFYGQAK-EIFANTAK  385 (454)
T ss_pred             HHHHHhhcEEEEECcCH-HHHHHHhh
Confidence            88777788889999876 67777663

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=6.4e-57  Score=444.25  Aligned_cols=302  Identities=27%  Similarity=0.398  Sum_probs=249.8

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~   83 (363)
                      ++|+||+++++||++++|+++|+|+++++|++++..  +.++|+||||||||||++||+++|+..|.++.++||+|.|..
T Consensus        71 ~vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG~~~~  148 (438)
T PRK04663         71 LVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAV--DKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVPAL  148 (438)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccCHHHH
Confidence            589999999999999999999999999999998877  468999999999999999999999999999999999999974


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017957           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (363)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~  163 (363)
                      ...         ..+.|++|+|+|+++++.... ++|+++|||||++||+|+|||+|+|+++|.++++.   .+.+|+|.
T Consensus       149 ~~~---------~~~~~~~V~E~ss~~l~~~~~-~~p~iavitNi~~dHld~~gs~e~y~~aK~~i~~~---~~~~v~n~  215 (438)
T PRK04663        149 DLL---------EQDAELYVLELSSFQLETTSS-LKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH---AELAVVNR  215 (438)
T ss_pred             hhh---------cCCCCEEEEEcChhhhccCcc-cCCCEEEEecCChhhCcccCCHHHHHHHHHHHHhC---CCEEEEeC
Confidence            321         235689999999999875443 89999999999999999999999999999999985   47999999


Q ss_pred             CChhHHHHHhcCCccEEEeccCC-CceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCH
Q 017957          164 GNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV  242 (363)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~  242 (363)
                      ||+.......  ..++++||... ++.... .....+.+.. +.. .+....++++|.||++|+++|+  +++..+|+++
T Consensus       216 dd~~~~~~~~--~~~~~~~g~~~~~~~~~~-~~~~~~~~~~-~~~-~~~~~~l~l~G~hNv~NalaAi--a~a~~lGi~~  288 (438)
T PRK04663        216 DDKQTYPDHA--ELQLVTFGFDQQDFGLAQ-HQGREWLADN-GQP-VLASAELKLVGRHNVANVLVVL--ALLDAAGVDY  288 (438)
T ss_pred             CCHHHHhhhc--CCcEEEEecCCCCCCeEe-cCCeEEEEeC-Cce-eeehhhcCCcchhhHHHHHHHH--HHHHHcCCCH
Confidence            9998654432  34677887542 221111 0111222221 111 1223578999999999999999  8999999999


Q ss_pred             HHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc-CCcEEEEEcCCCCCCCCCCccchhhhhhhc
Q 017957          243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPL  321 (363)
Q Consensus       243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l  321 (363)
                      ++|+++|++|++++||||++. ..+++++|||+||+||+|+.+|++.+. ++|+++|+|+|.++++      ++++.+.+
T Consensus       289 ~~i~~~L~~f~g~~~R~e~v~-~~~g~~~idDs~~tn~~s~~~Al~~~~~~~~~i~IlGg~~~~~~------~~~l~~~~  361 (438)
T PRK04663        289 RKALDALKSYTGLTHRCQVVA-DNHGIKWVNDSKATNVASTLAALSGLEIEGKLYLLVGGVGKGAD------FSPLKPVL  361 (438)
T ss_pred             HHHHHHHHhCCCCCCceEEee-eeCCcEEEeCCCcCCHHHHHHHHHhcccCCcEEEEECCccCCCC------HHHHHHHH
Confidence            999999999999999999996 457899999999999999999999985 3579999999998875      56788877


Q ss_pred             cc-CcEEEEEcccc
Q 017957          322 NH-HRCVITVCALL  334 (363)
Q Consensus       322 ~~-~~~vi~~G~~~  334 (363)
                      +. .+.++++|+..
T Consensus       362 ~~~~~~vi~~G~~~  375 (438)
T PRK04663        362 ATLNLQLCCFGEDG  375 (438)
T ss_pred             HhhCcEEEEECCCH
Confidence            53 45899999986

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=7.8e-57  Score=448.20  Aligned_cols=318  Identities=23%  Similarity=0.317  Sum_probs=253.8

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCC-----CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeeccc
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-----RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL   78 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~-----~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gni   78 (363)
                      ++|.||++|++||++++|+++|+|+++++|++++...     .+.++|+||||||||||++||+++|+..|.++.+.||+
T Consensus        73 ~VV~SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gni  152 (488)
T PRK03369         73 LVVTSPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNI  152 (488)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCC
Confidence            6899999999999999999999999999999876541     13479999999999999999999999999999999999


Q ss_pred             chhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcE
Q 017957           79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL  158 (363)
Q Consensus        79 g~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~  158 (363)
                      |.|+....         ..+.|++|+|+|+++++.+. .++|+++|||||++||+|+|||+|+|+.+|++|++    ++.
T Consensus       153 G~p~~~~~---------~~~~~~~VlE~ss~ql~~~~-~~~P~vaVITNI~~DHLd~~gt~e~ya~aK~~I~~----~~~  218 (488)
T PRK03369        153 GSPVLDVL---------DEPAELLAVELSSFQLHWAP-SLRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALT----GRV  218 (488)
T ss_pred             chHHHHhc---------cCCCCEEEEECChHHhCccc-ccCCCEEEEcCCCHHHhhhcCCHHHHHHHHHHHhc----CCE
Confidence            99985421         34678999999999987654 48999999999999999999999999999999997    478


Q ss_pred             EEEeCCChhHHHHHhcCCcc-EEEeccCC----CceeccccccceEEEe--cCCeEEEEEeeccCCCchhHHHHHHHHHH
Q 017957          159 GLLPFGNQHLNEAIKGHRFN-LAWIGAFP----GVKIDTEAKTASFEVP--AVGVVSQLQLHNMKVMGRHNYHNAAVAAL  231 (363)
Q Consensus       159 ~v~n~dd~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~l~G~h~~~Nal~A~~  231 (363)
                      +|+|.||+....+....... ...++...    ++... +   ..+...  ..+.. ......++++|.||++|+++|+ 
T Consensus       219 ~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~-~~~~~~l~l~G~hnv~NalaAl-  292 (488)
T PRK03369        219 AVVGLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVR-D---GHLVDRAFADDLR-LAPVASIPVPGPVGVLDALAAA-  292 (488)
T ss_pred             EEEECCCHHHHHHHHhCCCcEEEEEeCCCCCcCCceEE-C---CEEEEeccCCccc-eechhhcCCCcHhHHHHHHHHH-
Confidence            99999999887765433222 23332211    11111 0   011000  00100 1112468899999999999999 


Q ss_pred             HHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCc
Q 017957          232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES  311 (363)
Q Consensus       232 ~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~  311 (363)
                       +++..+|+++++|+++|++|+++|||||++. ..+++.||||||||||+|++++++.++  ++++|+|++.+..     
T Consensus       293 -a~a~~lGi~~e~i~~~L~~f~~~~gR~E~v~-~~~gv~iIDDS~AhNp~s~~aal~~~~--~iilI~GG~~k~~-----  363 (488)
T PRK03369        293 -ALARAVGVPAGAIADALASFRVGRHRAEVVA-VADGITYVDDSKATNPHAARASILAYP--RVVWIAGGLLKGA-----  363 (488)
T ss_pred             -HHHHHcCCCHHHHHHHHHhCCCCCCccEEEE-cCCCEEEEECCCCCCHHHHHHHHHhCC--CeEEEecCcCCCC-----
Confidence             8999999999999999999999999999996 467899999999999999999999984  6899999998864     


Q ss_pred             cchhhhhhhcc-cCcEEEEEcccchHHHHhhCCCCCccccee
Q 017957          312 NGFEKLIEPLN-HHRCVITVCALLFLKIVIQFPKKEFSLPFS  352 (363)
Q Consensus       312 ~~~~~l~~~l~-~~~~vi~~G~~~~~~~~~~~~~~~~~~~~~  352 (363)
                       +++.+.+.++ +++.++++|+.. ..+.+.+.+.....|+.
T Consensus       364 -d~~~l~~~l~~~~~~vi~iG~~~-~~i~~~l~~~~~~~~~~  403 (488)
T PRK03369        364 -SVDALVAEMASRLVGAVLIGRDR-AVVAEALSRHAPDVPVV  403 (488)
T ss_pred             -CHHHHHHHHhhheeEEEEEcCCH-HHHHHHHHhcCCCCCEE
Confidence             4778888886 589999999997 57777774322334443

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=2.4e-56  Score=441.38  Aligned_cols=314  Identities=26%  Similarity=0.445  Sum_probs=256.9

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCC-CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL   82 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~   82 (363)
                      ++|+||+++|+||++++|+++|+|++++++++++... .+.++|+||||||||||++||+++|+..|.++.+.||+|.|+
T Consensus        70 ~vv~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~GniG~~~  149 (445)
T PRK04308         70 ILALSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV  149 (445)
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCccHHH
Confidence            6899999999999999999999999999999988752 135899999999999999999999999999999999999998


Q ss_pred             hhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEe
Q 017957           83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP  162 (363)
Q Consensus        83 ~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n  162 (363)
                      .......     ...+.|++|+|+|+++++.+.. ++|+++|||||++||+++|+|+|+|+.+|++|++   +++.+|+|
T Consensus       150 ~~~~~~~-----~~~~~d~~VlE~~~~~l~~~~~-~~p~iaviTNI~~DHld~~~t~e~~~~~K~~i~~---~~~~~i~n  220 (445)
T PRK04308        150 LEAELQR-----EGKKADVWVLELSSFQLENTES-LRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFR---GDGVQVLN  220 (445)
T ss_pred             HHHHHhh-----cCCCCcEEEEEeChHHhCcCcc-cCCCEEEEecCChHHhcccCCHHHHHHHHHHHhc---CCCEEEEe
Confidence            6544210     1235799999999999887655 8999999999999999999999999999999997   46899999


Q ss_pred             CCChhHHHHHhcCCccEEEeccCC--CceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCC
Q 017957          163 FGNQHLNEAIKGHRFNLAWIGAFP--GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV  240 (363)
Q Consensus       163 ~dd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi  240 (363)
                      .||+....+... ..++++|+...  ++.....  ...+.+.  +.. ......++++|.||++|+++|+  +++..+|+
T Consensus       221 ~dd~~~~~~~~~-~~~v~~~~~~~~~d~~~~~~--~~~~~~~--~~~-~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi  292 (445)
T PRK04308        221 ADDAFCRAMKRA-GREVKWFSLEHEADFWLERE--TGRLKQG--NED-LIATQDIPLQGLHNAANVMAAV--ALCEAVGL  292 (445)
T ss_pred             CCcHHHHHHhhc-CCcEEEecCCCCCceeEecc--CCEEEEc--Cce-eeehhccCCcChhhHHHHHHHH--HHHHHcCC
Confidence            999988776543 45677887532  2211110  1112221  111 1122468999999999999999  88999999


Q ss_pred             CHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhh
Q 017957          241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP  320 (363)
Q Consensus       241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~  320 (363)
                      ++++|+++|++|+++|||||++. ..+++.+|||+|+|||+|++++++.+. +++++|+|+|.+.++      |+++.+.
T Consensus       293 ~~~~i~~~L~~f~~~~~R~e~~~-~~~~~~~iDDs~~~n~~s~~~al~~~~-~~~i~IlGg~~~~~~------~~~~~~~  364 (445)
T PRK04308        293 PREALLEHVKTFQGLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGKGQD------FTPLRDA  364 (445)
T ss_pred             CHHHHHHHHhhCCCCCCceEEEE-eeCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEeCCCCCCCC------HHHHHHH
Confidence            99999999999999999999996 457889999999999999999999995 478999999988755      5566666


Q ss_pred             ccc-CcEEEEEcccchHHHHhhCC
Q 017957          321 LNH-HRCVITVCALLFLKIVIQFP  343 (363)
Q Consensus       321 l~~-~~~vi~~G~~~~~~~~~~~~  343 (363)
                      +.+ ++.++++|+.+ ..+.+.+.
T Consensus       365 l~~~~~~vil~G~~~-~~l~~~l~  387 (445)
T PRK04308        365 LAGKAKGVFLIGVDA-PQIRRDLD  387 (445)
T ss_pred             HHHhCcEEEEECCCH-HHHHHHHH
Confidence            654 79999999986 56666553

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=3.1e-56  Score=441.04  Aligned_cols=311  Identities=26%  Similarity=0.383  Sum_probs=256.4

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~   83 (363)
                      ++|+||+++++||++++|+++|+|+++++|++++..  +.++|+||||||||||++||+++|+..|.++.++||+|.|..
T Consensus        71 ~vV~sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~~  148 (448)
T PRK03803         71 EIIISPGLALDTPALRAAAAMGIEVIGDIELFAREA--KAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPAL  148 (448)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHHH
Confidence            689999999999999999999999999999998887  568999999999999999999999999999999999999985


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017957           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (363)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~  163 (363)
                      ...         ..+.|++|+|+|+++++.+.. ++|+++|||||++||+|+|||+|+|+++|.++++.   .+.+|+|.
T Consensus       149 ~~~---------~~~~~~~V~E~ss~~l~~~~~-~~P~iaVITNI~~DHld~~gs~e~~~~~K~~i~~~---~~~~V~n~  215 (448)
T PRK03803        149 DLL---------SDDPELYVLELSSFQLETTHS-LNAEVATVLNISEDHMDRYSDLEAYHQAKHRIYRG---AKQVVFNR  215 (448)
T ss_pred             HHh---------cCCCCEEEEEcChhhhCcCcc-cCccEEEEecCChhHcccCCCHHHHHHHHHHHHhC---CCeEEEeC
Confidence            422         224589999999999987766 89999999999999999999999999999999984   57899999


Q ss_pred             CChhHHHHHhcCCccEEEeccCC----CceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcC
Q 017957          164 GNQHLNEAIKGHRFNLAWIGAFP----GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG  239 (363)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lg  239 (363)
                      ||+....+... ..++++|+...    ++.+... ....+.+. .+ ...+....++++|.||++|+++|+  +++..+|
T Consensus       216 dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~~~~~~l~l~G~Hn~~NalaAi--a~a~~lg  289 (448)
T PRK03803        216 DDALTRPLVPD-NQPCLSFGLNAPDFDEWGLREG-DGETYLAH-GF-ERLMPVRELKLRGSHNLANALAAL--ALGEAAG  289 (448)
T ss_pred             CCHHHHHHhhc-CCcEEEEeCCCCCcCceEEEec-CCeEEEEe-CC-ceEEehhccCCCCHHHHHHHHHHH--HHHHHcC
Confidence            99988776542 24577787531    1111100 11112221 11 111123568999999999999999  8999999


Q ss_pred             CCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchhh
Q 017957          240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEK  316 (363)
Q Consensus       240 i~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~~  316 (363)
                      +++++|+++|++|+++|||||++. ..+++.+|||++||||+|+.+|++.++   ++|+++|+|++.+.+      ++++
T Consensus       290 i~~~~i~~~L~~f~g~~~R~e~v~-~~~gv~~idDs~atN~~a~~~al~~l~~~~~~~iilI~Gg~~k~~------d~~~  362 (448)
T PRK03803        290 LPKEAMLEVLRTFTGLPHRCEWVR-EVAGVDYYNDSKGTNVGATVAAIEGLGAHIQGKLVLIAGGDGKGA------DFSP  362 (448)
T ss_pred             CCHHHHHHHHhhCCCCCCceEEEE-EeCCeEEEEcCCcCCHHHHHHHHHhhhhcCCCCEEEEECCCCCCC------CHHH
Confidence            999999999999999999999997 467889999999999999999999985   257999999998754      4677


Q ss_pred             hhhhccc-CcEEEEEcccchHHHHhhCC
Q 017957          317 LIEPLNH-HRCVITVCALLFLKIVIQFP  343 (363)
Q Consensus       317 l~~~l~~-~~~vi~~G~~~~~~~~~~~~  343 (363)
                      +.+.+.+ ++.++++|+.. ..+.+.+.
T Consensus       363 l~~~l~~~~~~vil~G~~~-~~i~~~l~  389 (448)
T PRK03803        363 LREPVAKYVRAVVLIGRDA-DKIAAALG  389 (448)
T ss_pred             HHHHHHhhCCEEEEECCCH-HHHHHHHh
Confidence            8887764 78999999886 56776663

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=2.7e-56  Score=441.95  Aligned_cols=312  Identities=27%  Similarity=0.349  Sum_probs=256.7

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~   83 (363)
                      ++|.||+++++||++++|++.|+|++++++++++..  +.++|+||||||||||++||+++|+..|.++.++||+|.|+.
T Consensus        80 lVV~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~--~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gniG~p~~  157 (458)
T PRK01710         80 VIFKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYC--PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTPLF  157 (458)
T ss_pred             EEEECCCCCCCchHHHHHHHcCCcEEechHHhhhhc--CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCccChhHH
Confidence            689999999999999999999999999999888765  568999999999999999999999999999989999999987


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017957           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (363)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~  163 (363)
                      ....       ...+.|++|+|+|++++....  ++|+++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+|.
T Consensus       158 ~~~~-------~~~~~~~~VlE~~~~~~~~~~--~~PdiaViTNI~~dHld~~~s~e~~~~aK~~i~~~~~~~~~~v~n~  228 (458)
T PRK01710        158 SNIE-------EIKEEDKVVLELSSFQLMTMD--VSPEVAVVTNLSPNHLDVHKDMEEYIDAKKNIFKYQSENDLLVLNK  228 (458)
T ss_pred             HHHh-------hCCCCCEEEEEcCccccccCC--CCCCEEEEecCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence            4321       123568999999998877654  6999999999999999999999999999999999888899999999


Q ss_pred             CChhHHHHHhcCCccEEEeccCCCceecccc-ccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCH
Q 017957          164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA-KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV  242 (363)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~  242 (363)
                      ||+.+..+......++++||...+... ... ....+.+.  +... .....++++|.||++|+++|+  +++..+ +++
T Consensus       229 Dd~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~~--~~~~-~~~~~l~l~G~hnv~NalaA~--a~a~~~-i~~  301 (458)
T PRK01710        229 DNEITNGMEKEAKGDVVKFSRKEKVYE-GAYLKNGKLYIR--GKEV-CKKDDIKLKGMHNVENLLAAF--CAVNDD-VSI  301 (458)
T ss_pred             CcHHHHHHHhhcCCcEEEEeCCCCCCC-ceEEeCCEEEEc--CceE-EEhhhcCCccHhHHHHHHHHH--HHHHhC-CCH
Confidence            999887776444456788875321100 000 01112221  1111 113578999999999999999  777776 999


Q ss_pred             HHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhhcc
Q 017957          243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN  322 (363)
Q Consensus       243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~  322 (363)
                      ++|+++|++|++++||||.+. ..+|+++|||+|||||+|+.+|++.+++ ++++|+|+..+.      .+|+++++.+.
T Consensus       302 ~~i~~~L~~f~~~~~R~e~~~-~~~g~~~i~Dsy~~np~s~~~al~~~~~-~~i~IlGg~~~~------~~~~~l~~~~~  373 (458)
T PRK01710        302 ESMKKVATTFSGVEHRCEFVR-EINGVKYYNDSIASSPTRTLAGLKAFEK-PVILIAGGYDKK------IPFEPLAEEGY  373 (458)
T ss_pred             HHHHHHHHhCCCCCcceEEEE-EECCEEEecccccCCHHHHHHHHHhCCC-CEEEEeCCcCCC------CCHHHHHHHHH
Confidence            999999999999999999986 4688999999999999999999999965 689999975442      46899999775


Q ss_pred             -cCcEEEEEcccchHHHHhhC
Q 017957          323 -HHRCVITVCALLFLKIVIQF  342 (363)
Q Consensus       323 -~~~~vi~~G~~~~~~~~~~~  342 (363)
                       .++.+|++|+.+ ..+.+.+
T Consensus       374 ~~~~~vi~~G~~~-~~~~~~~  393 (458)
T PRK01710        374 EKIKTLILMGATK-NKIKEAF  393 (458)
T ss_pred             hhccEEEEECCCH-HHHHHHH
Confidence             589999999997 5666655

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=3.3e-55  Score=435.19  Aligned_cols=318  Identities=25%  Similarity=0.399  Sum_probs=254.9

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~   83 (363)
                      ++|+||+++++||++++|++.|++++++++++++.. ++.++|+||||||||||++||+++|+.+|.++...||+|.|.+
T Consensus        71 ~vv~s~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~-~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gniG~~~~  149 (459)
T PRK02705         71 LVVVSPGIPWDHPTLVELRERGIEVIGEIELAWRAL-KHIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNIGYAAC  149 (459)
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhh-cCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEecccChhHH
Confidence            578999999999999999999999999999988876 3678999999999999999999999999999999999999987


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017957           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (363)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~  163 (363)
                      ....  +. .....+.|++|+|+|+++++..+. ++|+++|||||++||+++|||+|+|+.+|++|++.   ++.+|+|.
T Consensus       150 ~~~~--~~-~~~~~~~d~~VlE~~s~~l~~~~~-~~p~iaVITNI~~DHld~~gt~e~~~~~K~~i~~~---~~~~Vln~  222 (459)
T PRK02705        150 ELAL--LR-SGKAQKPDWIVAELSSYQIESSPE-LAPKIGIWTTFTPDHLERHGTLENYFAIKASLLER---SEIRILNG  222 (459)
T ss_pred             HHHh--hh-hccCCCCCEEEEEccccccccCcc-cCCCEEEEecCChhhhcccCCHHHHHHHHHHHhcc---CCEEEEEC
Confidence            6432  00 011346799999999999998877 89999999999999999999999999999999984   68999999


Q ss_pred             CChhHHHHHhcCCccEEEeccCC-Cceeccc-c--ccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcC
Q 017957          164 GNQHLNEAIKGHRFNLAWIGAFP-GVKIDTE-A--KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG  239 (363)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lg  239 (363)
                      ||+.+..+..... ..++++... ....... .  ......+...+.  .+....++++|.||++|+++|+  +++..+|
T Consensus       223 dd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~l~G~hn~~NalaAi--a~a~~lg  297 (459)
T PRK02705        223 DDPYLRQHRSSWP-KGYWTSTQGKASLLGQADGWILEEGWVVERGEP--LFPLSALKMPGAHNLQNLLLAV--AAARLAG  297 (459)
T ss_pred             CCHHHHHHHhcCC-ceEEeccCCccccccccceeEecCCEEEECCcc--eeeHHHcCCccHHHHHHHHHHH--HHHHHcC
Confidence            9998877754332 345665421 1111000 0  000011111110  1112368999999999999999  8999999


Q ss_pred             CCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhh
Q 017957          240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE  319 (363)
Q Consensus       240 i~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~  319 (363)
                      ++++.|+++|++|+++|||||++. ..+++.+|||+|||||+|++++++.+++ ++++|+|+|.+.++      +.++.+
T Consensus       298 v~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~ii~Ds~a~N~~s~~~al~~l~~-~~i~IlGg~~~~~d------~~~~~~  369 (459)
T PRK02705        298 LSAEAIAEALRSFPGVPHRLERIG-TINGIDFINDSKATNYDAAEVGLKAVPG-PVILIAGGEAKQGD------DSAWLK  369 (459)
T ss_pred             CCHHHHHHHHHhCCCCCCceEEEE-eeCCcEEEEeCCCCCHHHHHHHHHhCCC-CeEEEecCccCCCC------HHHHHH
Confidence            999999999999999999999996 4568899999999999999999999964 78999999998875      445666


Q ss_pred             hcc-cCcEEEEEcccchHHHHhhCC
Q 017957          320 PLN-HHRCVITVCALLFLKIVIQFP  343 (363)
Q Consensus       320 ~l~-~~~~vi~~G~~~~~~~~~~~~  343 (363)
                      .+. .++.+|++|+.. ..+.+.+.
T Consensus       370 ~l~~~~~~vi~~g~~~-~~l~~~l~  393 (459)
T PRK02705        370 QIKAKAAAVLLFGEAA-PTLAQRLQ  393 (459)
T ss_pred             HHHhheeEEEEECCCH-HHHHHHHH
Confidence            664 489999999886 56666664

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=4.8e-55  Score=432.70  Aligned_cols=316  Identities=26%  Similarity=0.378  Sum_probs=258.4

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~   83 (363)
                      ++|.+|+++++||++++|+++|+|+++++|++++..  +.++|+||||||||||++||+++|+..|.++.+.||+|.|.+
T Consensus        71 ~vV~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~--~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gnig~p~~  148 (447)
T PRK02472         71 LMVKNPGIPYTNPMVEKALEKGIPIITEVELAYLIS--EAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYPAS  148 (447)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcccChhhH
Confidence            579999999999999999999999999999877765  568999999999999999999999999999999999999987


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017957           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (363)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~  163 (363)
                      ....       ...+.|++|+|+|++++..... ++|+++|||||++||+++|||+|+|+.+|++|++..++++.+|+|.
T Consensus       149 ~~~~-------~~~~~~~~V~E~ss~~~~~~~~-~~P~iaVITnI~~DHld~~gt~e~i~~~K~~i~~~~~~~~~~v~n~  220 (447)
T PRK02472        149 EVAQ-------KATADDTLVMELSSFQLMGIET-FRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVINF  220 (447)
T ss_pred             HHHh-------cCCCCCEEEEEcCchhhCcccc-cCCCEEEEeccChhhhcccCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence            5321       1235689999999988775444 8999999999999999999999999999999999888889999999


Q ss_pred             CChhHHHHHhcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHH
Q 017957          164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE  243 (363)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~  243 (363)
                      ||+.+..+......++++|+...+...........+.+.  +.. .+....++++|.||++|+++|+  +++..+|++++
T Consensus       221 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~l~G~hn~~Na~aAi--a~~~~lgi~~~  295 (447)
T PRK02472        221 DQEEVKELAKQTKATVVPFSTTEKVEDGAYIKDGALYFK--GEK-IMAADDIVLPGSHNLENALAAI--AAAKLLGVSNE  295 (447)
T ss_pred             CcHHHHHHHhhcCceEEEeecCCCCcCceEEECCEEEEC--Cce-EEehhhcCCCCHHHHHHHHHHH--HHHHHcCCCHH
Confidence            999887766555556778875422100000000112221  111 1122368999999999999999  88999999999


Q ss_pred             HHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhhccc
Q 017957          244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH  323 (363)
Q Consensus       244 ~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~~  323 (363)
                      +|+++|++|++++||||++. ..+++++|||+|||||+|+.++++.++ +++++|+|+..+.      .+|+++.+.+.+
T Consensus       296 ~i~~~L~~f~~~~~R~e~~~-~~~g~~vi~D~~a~N~~s~~~al~~~~-~~ii~I~g~~~~~------~~~~~l~~~l~~  367 (447)
T PRK02472        296 AIREVLSTFSGVKHRLQYVG-TIDGRKFYNDSKATNILATQKALSGFN-QPVVLLAGGLDRG------NEFDELVPYLKN  367 (447)
T ss_pred             HHHHHHHhCCCCCCcceEEE-EECCeEEEECCCCCCHHHHHHHHHhCC-CCEEEEECCCCCC------CCHHHHHHHHhc
Confidence            99999999999999999996 456889999999999999999999984 5789999975432      358889888877


Q ss_pred             CcEEEEEcccchHHHHhhCC
Q 017957          324 HRCVITVCALLFLKIVIQFP  343 (363)
Q Consensus       324 ~~~vi~~G~~~~~~~~~~~~  343 (363)
                      ++.++++|+.. ..+.+.+.
T Consensus       368 ~~~v~~~G~~~-~~l~~~~~  386 (447)
T PRK02472        368 VKAMVVFGETA-EKLARAAE  386 (447)
T ss_pred             cCEEEEECCCH-HHHHHHHH
Confidence            89999999986 56776653

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=2.6e-54  Score=426.22  Aligned_cols=310  Identities=25%  Similarity=0.378  Sum_probs=251.8

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~   83 (363)
                      ++|.||+++++||++++|+++|++++++.+++++..  +.++|+||||||||||++||+++|+..|.++.++||+|.|..
T Consensus        68 ~vv~spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gnig~p~~  145 (438)
T PRK03806         68 LIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLPAL  145 (438)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCcchhHH
Confidence            689999999999999999999999999999987766  568999999999999999999999999999999999999974


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEEEe
Q 017957           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLP  162 (363)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v~n  162 (363)
                      .. .        ..+.+++|+|+|+++++.+.. ++|+++|||||++||+|+| +|+|+|+.+|.+|++.   .+.+|+|
T Consensus       146 ~~-~--------~~~~~~~V~E~ss~~l~~~~~-~~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~---~~~~v~n  212 (438)
T PRK03806        146 SL-L--------DQECELYVLELSSFQLETTSS-LKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVN  212 (438)
T ss_pred             Hh-h--------ccCCCEEEEEccchhhccCcc-cCCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhC---CCeEEEe
Confidence            32 1        345689999999999887655 8999999999999999999 5999999999999984   5789999


Q ss_pred             CCChhHHHHHhcCCccEEEeccCC-CceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCC
Q 017957          163 FGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD  241 (363)
Q Consensus       163 ~dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~  241 (363)
                      .||+....+... ..++++|+... ++..... ....+.+...+ . .+..+.++++|.||++|+++|+  +++..+|++
T Consensus       213 ~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi~  286 (438)
T PRK03806        213 ADDALTMPIRGA-DKRCVSFGVNMGDYHLNRQ-QGETWLRVKGE-K-VLNTKEMKLSGQHNYTNALAAL--ALADAVGIP  286 (438)
T ss_pred             CCCHHHHHHhcC-CceEEEEecCCCceEEEec-CCeEEEEecCc-e-eeehhhcCCcccccHHHHHHHH--HHHHHcCCC
Confidence            999988775432 34567776431 2221110 11111211111 1 1123468999999999999999  899999999


Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc-CCcEEEEEcCCCCCCCCCCccchhhhhhh
Q 017957          242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEP  320 (363)
Q Consensus       242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~~~i~IlG~~~~~g~~~~~~~~~~l~~~  320 (363)
                      +++|+++|++|+++|||||++. ..+++.+|||+|||||+|++++++.+. ++|+++|+|++++.++      +.++.+.
T Consensus       287 ~~~i~~~L~~f~~~~gR~E~v~-~~~~~~~i~Ds~a~n~~a~~~al~~l~~~~~~i~IlG~~~k~~d------~~~l~~~  359 (438)
T PRK03806        287 RASSLKALTTFTGLPHRFQLVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSAD------FSPLARY  359 (438)
T ss_pred             HHHHHHHHHhCCCCCCeEEEEE-eeCCEEEEEcCCCCCHHHHHHHHHhCccCCcEEEEECCcCCCCC------HHHHHHH
Confidence            9999999999999999999996 457889999999999999999999996 3578999999888754      6678777


Q ss_pred             cc-cCcEEEEEcccchHHHHhhC
Q 017957          321 LN-HHRCVITVCALLFLKIVIQF  342 (363)
Q Consensus       321 l~-~~~~vi~~G~~~~~~~~~~~  342 (363)
                      ++ ....++++|+.. ..+.+.+
T Consensus       360 l~~~~~~v~~~g~~~-~~l~~~~  381 (438)
T PRK03806        360 LNGDNIRLYCFGRDG-AQLAALR  381 (438)
T ss_pred             HHhhCcEEEEECCCH-HHHHHHh
Confidence            75 345899999975 5555543

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=3.7e-54  Score=427.55  Aligned_cols=317  Identities=25%  Similarity=0.330  Sum_probs=253.3

Q ss_pred             eeeeccccCCCcH----HHHHHHhcCCceeeHHHHHHhhCC---CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeec
Q 017957            4 LWLFLLEFQLKAT----GLACLLQSGKRVMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus         4 ~~~~~~~~~~~~p----~l~~a~~~~~~~l~~~~~~~~~~~---~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      ++|+||+++++||    ++..+++.|+|++++++++++.+.   .+.++|+||||||||||++||+++|+..|.++.++|
T Consensus        68 ~vv~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~g  147 (460)
T PRK01390         68 ALVLSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQMGG  147 (460)
T ss_pred             EEEECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEcC
Confidence            6899999999988    999999999999999999887631   256899999999999999999999999999999999


Q ss_pred             ccchhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCC
Q 017957           77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT  156 (363)
Q Consensus        77 nig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~  156 (363)
                      |+|.|+.....        ..+.|++|+|+|+++++.++. ++|+++|||||++||+++|||+|+|+.+|++|++..++ 
T Consensus       148 nig~~~~~~~~--------~~~~~~~V~E~~~~~ld~t~~-i~P~iaVITNI~~DHld~lgsle~ia~~K~~ii~~~~~-  217 (460)
T PRK01390        148 NIGTAVLTLEP--------PPAGRVYVLELSSYQIDLAPS-LDPDVGVLLNLTPDHLDRHGTMEGYAAAKERLFAGQGP-  217 (460)
T ss_pred             ccchhhhhccc--------CCCCCEEEEEcCccccccccc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCC-
Confidence            99999865321        335789999999999987765 89999999999999999999999999999999998766 


Q ss_pred             cEEEEeCCChhHHHHHhcC---CccEEEeccCCCc--eeccccccceEEEecCCeEEEEEe-eccCCCchhHHHHHHHHH
Q 017957          157 KLGLLPFGNQHLNEAIKGH---RFNLAWIGAFPGV--KIDTEAKTASFEVPAVGVVSQLQL-HNMKVMGRHNYHNAAVAA  230 (363)
Q Consensus       157 ~~~v~n~dd~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~l~l~G~h~~~Nal~A~  230 (363)
                      +.+|+|.||+.+..+....   ..++++|+.....  ..... ....+..........+.. ..++++|.||++|+++|+
T Consensus       218 ~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAi  296 (460)
T PRK01390        218 DTAVIGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYAD-GGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAAAY  296 (460)
T ss_pred             CEEEEeCCCHHHHHHHHhccccCceEEEEeCCCCCcCceEEe-CCEEEEecCCCcceeeeHHhhccCCchhHHHHHHHHH
Confidence            8999999999877665432   3456677653210  00000 011122211100001110 025799999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCC
Q 017957          231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE  310 (363)
Q Consensus       231 ~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~  310 (363)
                        +++..+|++++.|+++|++|+++|||||++. ..+++.+|||+|||||+|++++|+.++  ++++|+|+++++.    
T Consensus       297 --aa~~~lgi~~~~i~~gL~~~~~~~gR~e~i~-~~~g~~vIdDs~ahNp~s~~~aL~~~~--~i~~I~G~~d~~~----  367 (460)
T PRK01390        297 --AAARALGLSPEEIAAGLASFPGLAHRMEQVG-RRGGVLFVNDSKATNADAAAKALSSFD--RIYWIAGGKPKEG----  367 (460)
T ss_pred             --HHHHHcCCCHHHHHHHHHhCCCCCCceEEEe-eeCCcEEEEcCCCCCHHHHHHHHHhCC--CeEEEecCccCCC----
Confidence              8899999999999999999998999999996 357789999999999999999999884  7899999877653    


Q ss_pred             ccchhhhhhhcccCcEEEEEcccchHHHHhhCC
Q 017957          311 SNGFEKLIEPLNHHRCVITVCALLFLKIVIQFP  343 (363)
Q Consensus       311 ~~~~~~l~~~l~~~~~vi~~G~~~~~~~~~~~~  343 (363)
                        .++.+.+.+..++.++++|... ..+.+.+.
T Consensus       368 --~~~~L~~~~~~v~~v~~~g~~~-~~l~~~~~  397 (460)
T PRK01390        368 --GIESLAPFFPRIAKAYLIGEAA-EAFAATLG  397 (460)
T ss_pred             --CHHHHHHHHHhhCEEEEECCCH-HHHHHHHh
Confidence              3666777666788899999886 67777664

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=5e-54  Score=425.99  Aligned_cols=313  Identities=23%  Similarity=0.291  Sum_probs=251.4

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHH-HHhhCCC---CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccc
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDF-AAQVIPR---SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG   79 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~-~~~~~~~---~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig   79 (363)
                      ++|.||++|++||++++|+++++|+++++|+ +++....   ..++|+||||||||||++||+++|+..|.++.+.||+|
T Consensus        72 ~vV~SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~GniG  151 (468)
T PRK04690         72 VVVKSPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNIG  151 (468)
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCCCC
Confidence            6899999999999999999999999999998 4443311   24799999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCc-cccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcE
Q 017957           80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL  158 (363)
Q Consensus        80 ~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~-~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~  158 (363)
                      .|+.....       ...+.|++|+|+|++++..... .++|+++|||||++||+|+|||+|+|..+|.+|++..++ +.
T Consensus       152 ~p~~~~~~-------~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~gs~e~y~~aK~~i~~~~~~-~~  223 (468)
T PRK04690        152 VPLLEVLA-------PQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGRP-RI  223 (468)
T ss_pred             cchHHHhc-------cCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccCCHHHHHHHHHHHHhCCCC-Ce
Confidence            99964322       1345689999999998876653 389999999999999999999999999999999987653 67


Q ss_pred             EEEeCCChhHHHHHhcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHc
Q 017957          159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI  238 (363)
Q Consensus       159 ~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~l  238 (363)
                      +|+|.||+....+.. ...++++|+...+....     ..+.+.. + ...+....++++|.||+.|+++|+  +++..+
T Consensus       224 ~v~n~dd~~~~~~~~-~~~~v~~~~~~~~~~~~-----~~~~~~~-~-~~~~~~~~~~l~G~h~~~Na~~A~--a~~~~l  293 (468)
T PRK04690        224 ALLNAADPRLAALQL-PDSEVVWFNHPDGWHVR-----GDVVYRG-E-QALFDTALVPLPGRHNRGNLCAVL--AALEAL  293 (468)
T ss_pred             EEEeCccHHHHHHhc-CCCeEEEeeCCccceec-----ceEEEcC-C-ceEEeeccccCccHhhHHHHHHHH--HHHHHc
Confidence            899999998766532 23466777653221111     1122221 1 112223578899999999999999  889999


Q ss_pred             CCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhh
Q 017957          239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI  318 (363)
Q Consensus       239 gi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~  318 (363)
                      |+++++|+++|++|+++|||||++. +.+|+.+||||+||||+|++++++.++++++++|+|++.++.      +++.+.
T Consensus       294 gi~~~~i~~~l~~~~~~~gR~e~~~-~~~g~~iidDs~ahNp~a~~~al~~~~~~~i~~i~Gg~~k~k------d~~~l~  366 (468)
T PRK04690        294 GLDAVALAPAAAGFRPLPNRLQELG-SRDGITYVNDSISTTPHASLAALDCFAGRRVALLVGGHDRGL------DWTDFA  366 (468)
T ss_pred             CCCHHHHHHHHHhCCCCCCCcEEEE-ccCCeEEEEeCCCCCHHHHHHHHHhccCCcEEEEEcCCCCCC------CHHHHH
Confidence            9999999999999998999999996 456899999999999999999999997668999999876643      477888


Q ss_pred             hhcc-c-CcEEEEEcccchHHHHhhC
Q 017957          319 EPLN-H-HRCVITVCALLFLKIVIQF  342 (363)
Q Consensus       319 ~~l~-~-~~~vi~~G~~~~~~~~~~~  342 (363)
                      +.+. . .+.++++|+... .+.+.+
T Consensus       367 ~~l~~~~~~~v~~~g~~~~-r~~~~l  391 (468)
T PRK04690        367 AHMAQRAPLEIVTMGANGP-RIHALL  391 (468)
T ss_pred             HHHHhccCeEEEEeCCCHH-HHHHHH
Confidence            8876 4 378899998863 344444

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=7.6e-54  Score=425.43  Aligned_cols=316  Identities=26%  Similarity=0.351  Sum_probs=249.8

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhh-----CCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeeccc
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQV-----IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL   78 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~-----~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gni   78 (363)
                      ++|+||+++++||++++|+++|++++++++++++.     +..+.++|+||||||||||++||+++|+..|.++.+.||+
T Consensus        77 ~vV~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni  156 (473)
T PRK00141         77 LVVTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNI  156 (473)
T ss_pred             EEEeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEeccC
Confidence            68999999999999999999999999999987664     2123479999999999999999999999999999999999


Q ss_pred             chhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcE
Q 017957           79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL  158 (363)
Q Consensus        79 g~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~  158 (363)
                      |.|++....       ...+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++++    .+.
T Consensus       157 g~p~~~~l~-------~~~~~~~~V~E~ss~~l~~~~-~~~pdiaViTNi~~dHLd~~~s~e~y~~aK~~l~~----~~~  224 (473)
T PRK00141        157 GVPVSAALV-------AQPRIDVLVAELSSFQLHWSP-TLTPDVGVVLNLAEDHIDWHGSMRDYAADKAKVLR----GPV  224 (473)
T ss_pred             ChhHHHHHh-------cCCCCCEEEEecCCcccccCc-ccCCCEEEEcCCChhhccccCCHHHHHHHHHHHhh----CCE
Confidence            999874332       134678999999999886554 48999999999999999999999999999999997    368


Q ss_pred             EEEeCCChhHHHHHhcC-CccEEEeccCCCceeccccccceEEEecCCeEEEE-EeeccCCCchhHHHHHHHHHHHHHHH
Q 017957          159 GLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGL  236 (363)
Q Consensus       159 ~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~G~h~~~Nal~A~~~a~~~  236 (363)
                      +|+|.||+....+.... ..++++|+...+...........+.....+..+.+ ....++++|.||++|+++|+  +++.
T Consensus       225 ~vln~Dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~--a~~~  302 (473)
T PRK00141        225 AVIGADDEYVVQLTSAADLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAA--AVAR  302 (473)
T ss_pred             EEEECCCHHHHHHHhhcCCCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHH--HHHH
Confidence            99999999988776433 23577887532100000000011211111212222 12468899999999999999  8899


Q ss_pred             HcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhh
Q 017957          237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK  316 (363)
Q Consensus       237 ~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~  316 (363)
                      .+|++.+.++++|++|++++||||++. ..++..+|||+|||||+|++++++.++  ++++|+|++.+..      +++.
T Consensus       303 ~lgi~~~~i~~~l~~~~~~~~R~e~~~-~~~~~~iiDdsyahNp~s~~~~l~~l~--~~~~i~gG~~kdk------d~~~  373 (473)
T PRK00141        303 SQGVAPEAIARALSSFEVAGHRGQVVA-EHGGVTWIDNSKATNPHAADAALAGHE--SVVWVAGGQLKGA------DIDD  373 (473)
T ss_pred             HcCCCHHHHHHHHhhCCCCCCceEEEE-EeCCEEEEEcCCCCCHHHHHHHHHhcC--CEEEEecCccCCC------ChHH
Confidence            999999999999999999888999996 356889999999999999999999995  5789998886643      4677


Q ss_pred             hhhhcc-cCcEEEEEcccchHHHHhhCC
Q 017957          317 LIEPLN-HHRCVITVCALLFLKIVIQFP  343 (363)
Q Consensus       317 l~~~l~-~~~~vi~~G~~~~~~~~~~~~  343 (363)
                      +.+.+. ..+.++++|+.. ..+.+++.
T Consensus       374 ~~~~l~~~~~~~~~~~~~r-~~~~~~l~  400 (473)
T PRK00141        374 LIRTHAPRIKAAVVLGVDR-AEIVAALA  400 (473)
T ss_pred             HHHHHHhhccEEEEECCCH-HHHHHHHH
Confidence            877775 578888898764 45555553

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=9.3e-54  Score=426.92  Aligned_cols=318  Identities=29%  Similarity=0.394  Sum_probs=252.1

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCC--CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP--RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~--~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p   81 (363)
                      ++|.+++++|++|++..|++.|+++++++|++++...  ++.++|+||||||||||++||+++|+..|.++.+.||+|.|
T Consensus        81 ~Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gnig~~  160 (480)
T PRK01438         81 LVVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNIGTP  160 (480)
T ss_pred             EEEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCccHH
Confidence            5789999999999999999999999999999877652  24579999999999999999999999999999999999999


Q ss_pred             hhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEE
Q 017957           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (363)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~  161 (363)
                      +.....       ...+.|++|+|+|+++++..+. ++|+++|||||++||+++|||+|+|+.+|++|++.  ..+.+|+
T Consensus       161 ~~~~~~-------~~~~~~~~V~E~ss~~l~~~~~-i~P~iaVITNI~~DHld~lgt~e~ia~~K~~I~~~--~~~~~v~  230 (480)
T PRK01438        161 VLDAVR-------DPEGYDVLAVELSSFQLHWSPS-VSPHSAAVLNLAPDHLDWHGSMEAYAAAKARIYEG--TTVACVY  230 (480)
T ss_pred             HHHHHh-------cCCCCCEEEEEcChHHhCcCcc-cCCCEEEEecCChhhccccCCHHHHHHHHHHHHhC--CCceEEE
Confidence            875322       2456799999999999876654 79999999999999999999999999999999995  2478999


Q ss_pred             eCCChhHHHHHhcC----CccEEEeccCC----Cceeccccc-cceEEEecCCeEEEEE-eeccCCCchhHHHHHHHHHH
Q 017957          162 PFGNQHLNEAIKGH----RFNLAWIGAFP----GVKIDTEAK-TASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAAL  231 (363)
Q Consensus       162 n~dd~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~l~l~G~h~~~Nal~A~~  231 (363)
                      |.||+....+....    ..++++|+.+.    ++....... ...+.....+..+.+. ...++++|.||++|+++|+ 
T Consensus       231 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAi-  309 (480)
T PRK01438        231 NVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNIANALAAA-  309 (480)
T ss_pred             eCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHHHHHHHHH-
Confidence            99999887765432    34566776421    111110000 0001111001011111 1258899999999999999 


Q ss_pred             HHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCc
Q 017957          232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES  311 (363)
Q Consensus       232 ~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~  311 (363)
                       +++..+|++.+.|+++|++|+++|||||++. ..+++.+|||+|||||+|++++++.++  ++++|+|++.+..     
T Consensus       310 -a~~~~lgi~~~~i~~~L~~~~~~~gR~E~i~-~~~~~~iiDDs~ahNp~a~~aaL~~l~--~i~~I~gG~~~~k-----  380 (480)
T PRK01438        310 -ALARSFGVPPAAVRDGLRAFRPDAHRIEHVA-DADGVTWVDDSKATNPHAAAASLAAYP--SVVWIAGGLAKGA-----  380 (480)
T ss_pred             -HHHHHcCCCHHHHHHHHHhCCCCCCceEEEE-EECCEEEEecCccCCHHHHHHHHHhCC--CEEEEEecccCCC-----
Confidence             8888999999999999999999999999996 456788999999999999999999993  7899998777653     


Q ss_pred             cchhhhhhhcc-cCcEEEEEcccchHHHHhhCC
Q 017957          312 NGFEKLIEPLN-HHRCVITVCALLFLKIVIQFP  343 (363)
Q Consensus       312 ~~~~~l~~~l~-~~~~vi~~G~~~~~~~~~~~~  343 (363)
                       ++..+.+.+. .++.+|++|+.. ..+.+.+.
T Consensus       381 -d~~~~~~~l~~~~~~vi~~g~~~-~~~~~~l~  411 (480)
T PRK01438        381 -DFDDLVRRAAGRLRGVVLIGADR-AEIAEALA  411 (480)
T ss_pred             -CHHHHHHHHHhhceEEEEECCCH-HHHHHHHH
Confidence             4677888775 489999999885 56666553

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1.7e-52  Score=414.76  Aligned_cols=319  Identities=26%  Similarity=0.431  Sum_probs=256.7

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~   83 (363)
                      ++|.++++++++|++.+|+++|++++++++.+++.. + .++|+||||||||||++||+++|+..|.++.+.||+|.|+.
T Consensus        71 ~vv~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~ig~~~~  148 (450)
T PRK14106         71 LVVVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYPLI  148 (450)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcccHHHH
Confidence            578899999999999999999999999999988876 3 78999999999999999999999999998999999999987


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017957           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (363)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~  163 (363)
                      .....       ..+.+++|+|+|++++.... .++|+++|||||+.||+++|||+|+|+.+|+++++..++.+.+++|.
T Consensus       149 ~~~~~-------~~~~~~~v~E~~~~~~~~~~-~~~P~i~VITnI~~dHl~~~gt~e~ia~~K~~i~~~~~~~~~~vln~  220 (450)
T PRK14106        149 DAVEE-------YGEDDIIVAEVSSFQLETIK-EFKPKVGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVLNY  220 (450)
T ss_pred             HHHhc-------CCCCCEEEEEcChhhhcccc-ccCCCEEEEecCCcchhcccCCHHHHHHHHHHHHhCCCCCCEEEEeC
Confidence            54221       23578999999987665443 38999999999999999999999999999999999888889999999


Q ss_pred             CChhHHHHHhcCCccEEEeccCCCceeccccccceEEEecCCeEEE-EEeeccCCCchhHHHHHHHHHHHHHHHHcCCCH
Q 017957          164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV  242 (363)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~  242 (363)
                      |++....+......++++|+.+.............+.+...+.... .....++++|.||++|+++|+  +++..+|+++
T Consensus       221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAi--a~~~~lgi~~  298 (450)
T PRK14106        221 DDPRTRSLAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAAT--AAAYLLGISP  298 (450)
T ss_pred             CcHHHHHHHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHH--HHHHHcCCCH
Confidence            9998877776666678888854211100000011222222221111 112368999999999999999  8899999999


Q ss_pred             HHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhhcc
Q 017957          243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN  322 (363)
Q Consensus       243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~  322 (363)
                      ++++++|++|+++|||||++. ..++..+|+|+|||||+|++++++.++. ++++|+|+|.+.      .+++++.+.+.
T Consensus       299 ~~i~~~L~~~~~~~gR~e~i~-~~~~~~vi~D~~ahNP~s~~~~l~~l~~-~~i~v~g~~~~~------k~~~~~~~~l~  370 (450)
T PRK14106        299 DVIANTLKTFKGVEHRIEFVA-EINGVKFINDSKGTNPDAAIKALEAYET-PIVLIAGGYDKG------SDFDEFAKAFK  370 (450)
T ss_pred             HHHHHHHHhCCCCCcceEEEe-eECCEEEEeCCCccCHHHHHHHHHhCCC-CeEEEeCCcCCC------CCHHHHHHHHH
Confidence            999999999999999999996 3467889999889999999999999964 678899877542      35677777765


Q ss_pred             -cCcEEEEEcccchHHHHhhCC
Q 017957          323 -HHRCVITVCALLFLKIVIQFP  343 (363)
Q Consensus       323 -~~~~vi~~G~~~~~~~~~~~~  343 (363)
                       .++.++++|+.. ..+.+.+.
T Consensus       371 ~~~~~vi~~g~~~-~~l~~~~~  391 (450)
T PRK14106        371 EKVKKLILLGETA-QEIAEAAR  391 (450)
T ss_pred             hhCCEEEEEcCCH-HHHHHHHh
Confidence             478999999875 56666553

>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase

Probab=100.00  E-value=1.1e-52  Score=415.44  Aligned_cols=310  Identities=21%  Similarity=0.258  Sum_probs=239.8

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCe-----Eeeccc
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-----FVGGNL   78 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~-----~~~gni   78 (363)
                      ++|+||+++++||++++|+++|+|+++++|++++...+..++|+||||||||||++||+++|+..|.++     ++.||+
T Consensus        63 ~vV~SpgI~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~gn~  142 (448)
T TIGR01081        63 LVVIGNAMKRGNPCVEAVLNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGNF  142 (448)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCcccccC
Confidence            689999999999999999999999999999988753123349999999999999999999999999876     367899


Q ss_pred             chhhhhhhhhcccCCCCCCCCcEEEEEeCccccccc---Cc--cccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccC
Q 017957           79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP---NK--YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM  153 (363)
Q Consensus        79 g~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~---~~--~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~  153 (363)
                      |.|..   .         .+.|++|+|+|++++...   ..  .++|+++|||||++||+|+|+|+|+|+.+|.+|++.+
T Consensus       143 G~~~~---~---------~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~t~e~~~~~K~~i~~~~  210 (448)
T TIGR01081       143 GVSAR---L---------GESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVRTV  210 (448)
T ss_pred             ccccc---c---------CCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccCCHHHHHHHHHHHHHhC
Confidence            98864   1         135899999999876642   22  2799999999999999999999999999999999987


Q ss_pred             CCCcEEEEeCCChhHHHHHh-cCCccEEEeccCCCceecc-ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHH
Q 017957          154 VNTKLGLLPFGNQHLNEAIK-GHRFNLAWIGAFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL  231 (363)
Q Consensus       154 ~~~~~~v~n~dd~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~  231 (363)
                      ++++.+|+|.||+.+..+.. ....++.+|+...++.... ......+.+...+..  ...+.++++|.||++|+++|+ 
T Consensus       211 ~~~~~~i~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~G~hn~~Na~~A~-  287 (448)
T TIGR01081       211 PGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQGEWQAEKITADGSHFDVLLDGEK--VGEVKWSLVGRHNMHNALMAI-  287 (448)
T ss_pred             CCCCEEEEeCCCHHHHHHHHhccCCCeEEECCCCCEEEEEEecCCcEEEEEECCce--eEEEEecCCcHHHHHHHHHHH-
Confidence            77789999999998876543 2223455665332221110 011112222212211  112367899999999999999 


Q ss_pred             HHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccC----CcEEEEEcCCCCCCC
Q 017957          232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG----HKCVILLGGQAKVLN  307 (363)
Q Consensus       232 ~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~----~~~i~IlG~~~~~g~  307 (363)
                       +++..+|++.+.++++|++|+++|||||++. ..+++.+|+|+ ||||+|++++++.++.    +|+++|+|+..+..+
T Consensus       288 -a~~~~lgi~~~~i~~~L~~~~~~~~R~e~~~-~~~g~~ii~D~-ahNp~s~~~~l~~l~~~~~~~~ii~I~g~~~~~~~  364 (448)
T TIGR01081       288 -AAARHVGVAIEDACEALGSFVNAKRRLELKG-EANGITVYDDF-AHHPTAIEATLQGLRQKVGGARILAVLEPRSNTMK  364 (448)
T ss_pred             -HHHHHcCCCHHHHHHHHHhCCCCCcceEEEE-ecCCeEEEEeC-CCCHHHHHHHHHHHHHhcCCCeEEEEECCCcchhh
Confidence             8899999999999999999999999999996 35678999998 9999999999998852    367899997654211


Q ss_pred             CCCccchhhhhhhcccCcEEEEEccc
Q 017957          308 GQESNGFEKLIEPLNHHRCVITVCAL  333 (363)
Q Consensus       308 ~~~~~~~~~l~~~l~~~~~vi~~G~~  333 (363)
                      .  +.++.++...++.+|.++++|..
T Consensus       365 l--g~~~~~l~~~~~~~d~vi~~~~~  388 (448)
T TIGR01081       365 L--GVHKDDLAPSLGRADQVFLYQPG  388 (448)
T ss_pred             h--hhHHHHHHHHHHhCCEEEEcCCC
Confidence            1  12344555555668999999865

Alternate name: murein tripeptide ligase

>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed

Probab=100.00  E-value=2e-53  Score=420.73  Aligned_cols=283  Identities=20%  Similarity=0.275  Sum_probs=226.6

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc----cchhhhhhhhhcccCCCCCCCCcEEEEEeCc---cccccc
Q 017957           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSS---YQMEIP  114 (363)
Q Consensus        42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn----ig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~---~~l~~~  114 (363)
                      +.++|+||||||||||++||+++|+..|.++.+.||    +|.|.+....        .++++++|+|+|+   ++++..
T Consensus        99 ~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~~t~gn~n~~~G~~~~~~~~--------~~~~~~~V~E~g~~~~gei~~~  170 (453)
T PRK10773         99 PARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNLNNDIGVPLTLLRL--------TPEHDYAVIELGANHQGEIAYT  170 (453)
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHHHhcCcccccCccccCCcccccHHhcC--------CCCCcEEEEEcCCCCcchhHHh
Confidence            468999999999999999999999999988888887    5777654332        4578999999995   344444


Q ss_pred             CccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCc-cEEEeccCC----Cce
Q 017957          115 NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF-NLAWIGAFP----GVK  189 (363)
Q Consensus       115 ~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~-~~~~~~~~~----~~~  189 (363)
                      ...++|+++|||||++||+|+|||+|+|+++|.+|++.+++++.+|+|.||+....+...... ++++||...    ++.
T Consensus       171 ~~~~~p~iaViTNI~~dHld~~gs~e~~~~aK~~l~~~~~~~g~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~d~~  250 (453)
T PRK10773        171 VSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADSNDWLNWQSVIGSKTVWRFSPNAANSVDFT  250 (453)
T ss_pred             cCccCCCEEEEeCCCHHHHhhcCCHHHHHHHHHHHHcccCCCCEEEEECCcHhHHHHHHHhcCCcEEEEeCCCCCcCcEE
Confidence            556899999999999999999999999999999999998888999999999987766543322 466787532    221


Q ss_pred             ec---cccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeec
Q 017957          190 ID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI  266 (363)
Q Consensus       190 ~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~  266 (363)
                      ..   ....+..+.+...+...   .+.++++|+||++|+++|+  +++..+|+++++|+++|++|++++||||.+. ..
T Consensus       251 ~~~i~~~~~~~~f~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~~~~~~gR~e~v~-~~  324 (453)
T PRK10773        251 ATNIHVTSHGTEFTLHTPTGSV---DVLLPLPGRHNIANALAAA--ALAMSVGATLDAVKAGLANLKAVPGRLFPIQ-LA  324 (453)
T ss_pred             EEEEEEeCCeeEEEEEecCceE---EEEecCCcHhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCceeEEE-CC
Confidence            11   11112223332211111   2578999999999999999  8999999999999999999999999999996 35


Q ss_pred             CCEEEEEcCCCCCHHHHHHHHhccc--CCcEEEEEcCCCCCCCCCCccchhhhhhhcc--cCcEEEEEcccchHHHHh
Q 017957          267 QGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITVCALLFLKIVI  340 (363)
Q Consensus       267 ~~~~iidD~~a~np~s~~~al~~~~--~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~--~~~~vi~~G~~~~~~~~~  340 (363)
                      ++.++|||+|||||+|++++++.++  ++|+++|+|+|.++|+.++ ..|+++++.+.  .+|.++++|+.+ +.+.+
T Consensus       325 ~g~~iIDDsYn~nP~s~~aaL~~l~~~~~r~i~VlG~m~elG~~~~-~~h~~~~~~~~~~~~d~v~~~G~~~-~~~~~  400 (453)
T PRK10773        325 EGQLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMAELGAESE-ACHRQVGEAAKAAGIDKVLSVGKLS-HAISE  400 (453)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEECChhhcchHHH-HHHHHHHHHHHHcCCCEEEEEChhH-HHHHH
Confidence            6789999999999999999999885  3567999999999999874 57899999886  479999999876 45554

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=4.1e-52  Score=416.35  Aligned_cols=320  Identities=27%  Similarity=0.382  Sum_probs=251.6

Q ss_pred             eeeeccccCCCc----HHHHHHHhcCCceeeHHHHHHhhCC------CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeE
Q 017957            4 LWLFLLEFQLKA----TGLACLLQSGKRVMSELDFAAQVIP------RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF   73 (363)
Q Consensus         4 ~~~~~~~~~~~~----p~l~~a~~~~~~~l~~~~~~~~~~~------~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~   73 (363)
                      ++|+||+++++|    |++++|++.++|++++++++++.+.      ...++|+||||||||||++||+++|+..|.+++
T Consensus        72 ~vv~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~  151 (498)
T PRK02006         72 LVALSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVA  151 (498)
T ss_pred             EEEECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEE
Confidence            689999999998    9999999999999999999877541      134899999999999999999999999999999


Q ss_pred             eecccchhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccC
Q 017957           74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM  153 (363)
Q Consensus        74 ~~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~  153 (363)
                      +.||+|.+..........   .....+++|+|+|+++++.... ++|+++|||||++||+|+|+|+|+|+.+|.++++  
T Consensus       152 ~~Gni~~~~~~~~~~~~~---~~~~~~~~V~E~ss~~l~~~~~-~~p~iaviTNI~~DHld~~gs~e~y~~aK~~i~~--  225 (498)
T PRK02006        152 VAGNISPAALDKLMEAID---AGALPDVWVLELSSFQLETTHT-LAPDAATVLNITQDHLDWHGSMAAYAAAKARIFG--  225 (498)
T ss_pred             EECCCCHHHHHHHHHhhc---cCCCCcEEEEEccHHHhCcccc-cCCCEEEEcCCChhhhcccCCHHHHHHHHHHHcC--
Confidence            999999775443211110   0112488999999998866554 8999999999999999999999999999999998  


Q ss_pred             CCCcEEEEeCCChhHHHHHhcC-CccEEEeccCC-----CceeccccccceEEEecCCeE-------------------E
Q 017957          154 VNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFP-----GVKIDTEAKTASFEVPAVGVV-------------------S  208 (363)
Q Consensus       154 ~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-------------------~  208 (363)
                       +++.+|+|.|||.+..+.... ..++++||...     ++...... ...+.+...+..                   +
T Consensus       226 -~~~~~Vln~dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (498)
T PRK02006        226 -PRTVRVLNRDDARVMAMAPPGGAADAVTFGLDEPAADGDYGLLRDN-GMAWLVEAEDRDAADPAPSRRRKKDAAPPPDI  303 (498)
T ss_pred             -CCCEEEEeCCCHHHHHHhhccCCccEEEEeCCCccccccceEEecC-CeEEEEecCccccccccccccccccccccccc
Confidence             478999999999988776432 23577887532     11111000 001111100000                   0


Q ss_pred             ---E-EEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHH
Q 017957          209 ---Q-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATC  284 (363)
Q Consensus       209 ---~-~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~  284 (363)
                         . .....++++|.||++|+++|+  +++..+|+++++|+++|++|++++||||++. ..+++.+|||+|+|||+|+.
T Consensus       304 ~~~~~~~~~~l~l~G~hn~~NalaAi--a~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~-~~~g~~~idDs~~tn~~s~~  380 (498)
T PRK02006        304 RLKRLMPADALRIRGLHNAANALAAL--ALARAIGLPAAPLLHGLREYRGEPHRVELVA-TIDGVDYYDDSKGTNVGATV  380 (498)
T ss_pred             chhceeeHhhcCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCceEEEE-EECCEEEEEcCCCCCHHHHH
Confidence               0 111368999999999999999  8999999999999999999999999999996 45789999999999999999


Q ss_pred             HHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhhcc-cCcEEEEEcccchHHHHhhC
Q 017957          285 TGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITVCALLFLKIVIQF  342 (363)
Q Consensus       285 ~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~-~~~~vi~~G~~~~~~~~~~~  342 (363)
                      +|++.++ +|+++|+|+|.+.++      ++++.+.+. .++.||++|+.. ..+.+.+
T Consensus       381 ~al~~~~-~~ii~IlGg~~~~~~------~~~~~~~l~~~~~~vi~~G~~~-~~i~~~~  431 (498)
T PRK02006        381 AALDGLA-QRVVLIAGGDGKGQD------FSPLAAPVARHARAVVLIGRDA-PAIRAAL  431 (498)
T ss_pred             HHHHhCC-CCEEEEEcCCCCCCC------HHHHHHHHHHhCCEEEEEcCCH-HHHHHHH
Confidence            9999985 578999999987543      566766665 589999999886 5676665

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=100.00  E-value=4.1e-52  Score=411.34  Aligned_cols=316  Identities=18%  Similarity=0.268  Sum_probs=250.8

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCC--CeEeecccchh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI--EAFVGGNLGNP   81 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~--~~~~~gnig~p   81 (363)
                      ++|.||+++++||++++|+++++|+++++|++++.. ++.++|+||||||||||++||+++|+..|.  ++..+||+|.|
T Consensus        61 ~vV~spgi~~~~p~~~~a~~~~i~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~~~  139 (448)
T TIGR01082        61 VVVVSAAIKDDNPEIVEAKERGIPVIRRAEMLAELM-RFRHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVKEA  139 (448)
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCceEeHHHHHHHHH-hcCcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECcccccC
Confidence            689999999999999999999999999999998876 345899999999999999999999999997  56678898887


Q ss_pred             hhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhc-cCCCHHHHHHHHHHhcccCCCCcEEE
Q 017957           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE-RHKTMKNYALTKCHLFSHMVNTKLGL  160 (363)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~-~~gt~e~~~~~K~~i~~~~~~~~~~v  160 (363)
                      ......         ...|++|+|+|++++..  ..++|+++|||||++||+| +|+|+|+|+++|.++++.+++++.+|
T Consensus       140 ~~~~~~---------~~~~~~V~E~s~~q~~~--~~~~p~vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~~~~~V  208 (448)
T TIGR01082       140 GTNARL---------GSGEYLVAEADESDASF--LHLQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGLAV  208 (448)
T ss_pred             Cccccc---------CCCCEEEEECCCccchH--hhccCCEEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCCCCEEE
Confidence            754321         23589999999998765  3489999999999999999 88899999999999999888889999


Q ss_pred             EeCCChhHHHHHhcCCccEEEeccCC---Cceec---cccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHH
Q 017957          161 LPFGNQHLNEAIKGHRFNLAWIGAFP---GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (363)
Q Consensus       161 ~n~dd~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~  234 (363)
                      +|.||+....+......++++|+...   ++...   .......+.+...+.  ......++++|.||++|+++|+  ++
T Consensus       209 ~n~dd~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~G~hn~~N~~aA~--a~  284 (448)
T TIGR01082       209 ICADDPVLRELVPKATEQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGK--LYLEFTLNLPGRHNVLNALAAI--AV  284 (448)
T ss_pred             EECCCHHHHHHHhhcCCCEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEecCccHhHHHHHHHHH--HH
Confidence            99999998877654445677887541   12111   011111222221111  1123467899999999999999  88


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcC--CCCCCCC
Q 017957          235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG--QAKVLNG  308 (363)
Q Consensus       235 ~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~--~~~~g~~  308 (363)
                      +..+|++++.|+++|++|++++||||++. ..+++++|||+ ||||.++.++++.++    ++|+++|+|+  +.+..  
T Consensus       285 ~~~lgi~~~~i~~~l~~f~~~~~R~e~~~-~~~gv~~i~D~-ahn~~~~~a~~~al~~~~~~~~ii~i~g~~~~~r~k--  360 (448)
T TIGR01082       285 ALELGIDFEAILRALANFQGVKRRFEILG-EFGGVLLIDDY-AHHPTEIKATLKAARQGYPDKRIVVVFQPHRYSRTR--  360 (448)
T ss_pred             HHHcCCCHHHHHHHHHhCCCCCccceEEE-EeCCeEEEEcC-CCCHHHHHHHHHHHHHhcCCCeEEEEECCCCCccHH--
Confidence            99999999999999999999999999996 46789999995 999999999888763    3478899985  44421  


Q ss_pred             CCccchhhhhhhcccCcEEEEE-----------cccchHHHHhhCC
Q 017957          309 QESNGFEKLIEPLNHHRCVITV-----------CALLFLKIVIQFP  343 (363)
Q Consensus       309 ~~~~~~~~l~~~l~~~~~vi~~-----------G~~~~~~~~~~~~  343 (363)
                         .++.++.+.++.+|.++++           |... ..+.+.+.
T Consensus       361 ---~~~~~~~~~l~~~d~v~l~~~~~~~~~~~~g~~~-~~i~~~~~  402 (448)
T TIGR01082       361 ---DLFDDFAKVLSDADELILLDIYAAGEEPINGIDG-KSLARKIT  402 (448)
T ss_pred             ---HHHHHHHHHHHhCCEEEEecccCCCCCCCCCCCH-HHHHHHHh
Confidence               2356788877778999988           4443 56677664

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=100.00  E-value=1.5e-51  Score=408.68  Aligned_cols=305  Identities=19%  Similarity=0.255  Sum_probs=238.7

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCC--eEeecccchh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNP   81 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~--~~~~gnig~p   81 (363)
                      ++|.||+++++||++++|+++|+|+++++|++++.. ++.++|+||||||||||++||+++|+.+|.+  +..+||++.+
T Consensus        69 ~vv~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~-~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~~~  147 (461)
T PRK00421         69 VVVYSSAIPDDNPELVAARELGIPVVRRAEMLAELM-RFRTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILNAA  147 (461)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHH-ccCcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECceeccC
Confidence            689999999999999999999999999999998876 2458999999999999999999999999964  4566765443


Q ss_pred             hhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEE
Q 017957           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (363)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~  161 (363)
                      -....         ..+.|++|+|+|+++...  ..++|+++|||||++||+|+|||+|+|+++|.+++..+++++.+|+
T Consensus       148 ~~~~~---------~~~~~~~V~E~ss~q~~~--~~~~p~vaViTNI~~DHld~~gt~e~y~~ak~k~~~~~~~~~~~V~  216 (461)
T PRK00421        148 GTNAR---------LGNSDYFVAEADESDRSF--LKLHPDIAIVTNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGALVA  216 (461)
T ss_pred             Ccccc---------cCCCCEEEEECCCccchH--hhcCCCEEEEccCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence            22111         235689999999988643  2379999999999999999999999999999999998888899999


Q ss_pred             eCCChhHHHHHhcCCccEEEeccCC--Cceecc---ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHH
Q 017957          162 PFGNQHLNEAIKGHRFNLAWIGAFP--GVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL  236 (363)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~  236 (363)
                      |.||+....+......++++|+...  ++....   ......+.+...+.  .+....++++|.||++|+++|+  +++.
T Consensus       217 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~l~l~G~h~~~N~~aA~--a~~~  292 (461)
T PRK00421        217 CGDDPELRELLPRVSRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGE--VLGDFTLPLPGRHNVLNALAAI--AVAL  292 (461)
T ss_pred             ECCCHHHHHHHHhcCCCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCc--eEEEEEecCCcHHHHHHHHHHH--HHHH
Confidence            9999988887665556778887532  222110   11112233222211  1223568899999999999999  8899


Q ss_pred             HcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEc--CCCCCCCCCC
Q 017957          237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLG--GQAKVLNGQE  310 (363)
Q Consensus       237 ~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG--~~~~~g~~~~  310 (363)
                      .+|+++++|+++|++|+++|||||++. ..+++.+|+|+ ||||+++.++++.++    ++|+++|+|  ++.+..+   
T Consensus       293 ~lgv~~~~i~~~l~~f~~~~~R~e~~~-~~~g~~~i~D~-aHnp~~~~a~~~al~~~~~~~~i~~v~gp~~~~r~kd---  367 (461)
T PRK00421        293 ELGIDDEAIREALATFKGVKRRFEEKG-EVGGVVLIDDY-AHHPTEIKATLKAARQGYPDKRIVAVFQPHRYSRTRD---  367 (461)
T ss_pred             HcCCCHHHHHHHHHhCCCCCcccEEEE-ecCCcEEEEeC-CCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCccHHH---
Confidence            999999999999999999999999996 45688999995 999999999888774    267889998  3333211   


Q ss_pred             ccchhhhhhhcccCcEEEEEc
Q 017957          311 SNGFEKLIEPLNHHRCVITVC  331 (363)
Q Consensus       311 ~~~~~~l~~~l~~~~~vi~~G  331 (363)
                        .+..+++.++.+|.++++.
T Consensus       368 --~~~~~~~~l~~~d~vi~~~  386 (461)
T PRK00421        368 --LLDEFAEALSDADEVILLD  386 (461)
T ss_pred             --HHHHHHHHHHHCCEEEEcC
Confidence              1334777675688888873

>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.9e-52  Score=405.08  Aligned_cols=289  Identities=24%  Similarity=0.301  Sum_probs=240.9

Q ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc----cchhhhhhhhhcccCCCCCCCCcEEEEEeCc---ccccc
Q 017957           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSS---YQMEI  113 (363)
Q Consensus        41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn----ig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~---~~l~~  113 (363)
                      .+.++|+||||+|||||++|++++|+..|.+..+.||    +|.|++....        ..++|++|+|+|.   |++..
T Consensus       101 ~~~kvIaITGS~GKTTTKe~la~iL~~~~~v~~t~gn~Nn~iGlPltll~~--------~~~~e~~VlEmG~~~~GeI~~  172 (451)
T COG0770         101 FNAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNEIGLPLTLLRL--------PADTEYAVLEMGMNHPGEIAE  172 (451)
T ss_pred             cCCcEEEEeCCCCcHHHHHHHHHHHhhcCeEecCCCccCccccchhHHHhC--------CCcccEEEEEcCCCCCCcHHH
Confidence            3788999999999999999999999999988888888    6889987765        5668999999995   47777


Q ss_pred             cCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcC-CccEEEeccC--CCcee
Q 017957          114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAF--PGVKI  190 (363)
Q Consensus       114 ~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~--~~~~~  190 (363)
                      +..+.+|+++|||||+.+|+++|||.|.++++|.+|+.++++++++|+|.|++......... ..++++||..  .++..
T Consensus       173 l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~~~~~~~~v~~fg~~~~~d~~~  252 (451)
T COG0770         173 LSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWAAKIGNAKVLSFGLNNGGDFRA  252 (451)
T ss_pred             HhcccCCCEEEEcChhHHHHHhcCCHHHHHHHHHHHHhccCCCcEEEEECccHHHHHHHhhcCCCcEEEEcCCCCCceee
Confidence            88889999999999999999999999999999999999999999999999999876666543 4678889864  12221


Q ss_pred             ---ccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecC
Q 017957          191 ---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ  267 (363)
Q Consensus       191 ---~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~  267 (363)
                         ..+..+..|.+...+.+.   .+.++++|+||+.|+++|+  ++|+.+|++.++|+++|+.+++++||+|.+. ..+
T Consensus       253 ~~i~~~~~~~~f~~~~~~~~~---~~~l~~~G~hn~~NalaA~--a~a~~lG~~~e~i~~~L~~~~~~~gR~~~~~-~~~  326 (451)
T COG0770         253 TNIHLDEEGSSFTLDIEGGEA---EFELPLPGRHNVTNALAAA--ALALELGLDLEEIAAGLKELKPVKGRLEVIL-LAN  326 (451)
T ss_pred             EEEEEcCCceEEEEEecCceE---EEEecCCcHhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCCccceeEe-cCC
Confidence               112222334333333222   2589999999999999999  8999999999999999999999999999553 578


Q ss_pred             CEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchhhhhhhcc--cCcEEEEEcccchHHHHhhC
Q 017957          268 GVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITVCALLFLKIVIQF  342 (363)
Q Consensus       268 ~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~--~~~~vi~~G~~~~~~~~~~~  342 (363)
                      |.++|||+||.||+||+++++.+.   +++.|+|+|+|.|+|+.++ +.|+++++.+.  .+|.++++|+.+ +.+.+.+
T Consensus       327 g~~iIdD~YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ELG~~s~-~~H~~v~~~~~~~~~d~v~~~G~~~-~~i~~~~  404 (451)
T COG0770         327 GKTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGDMLELGEESE-ELHEEVGEYAVEAGIDLVFLVGELS-KAIAEAL  404 (451)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHHhhCccCCcEEEeCChhhhCccHH-HHHHHHHHHHHhcCceEEEEEccch-HHHHHhc
Confidence            899999999999999999998763   4444999999999998774 57999999875  379999999976 7888887


Q ss_pred             CCC
Q 017957          343 PKK  345 (363)
Q Consensus       343 ~~~  345 (363)
                      +.+
T Consensus       405 ~~~  407 (451)
T COG0770         405 GNK  407 (451)
T ss_pred             CCC
Confidence            643

>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

Probab=100.00  E-value=1.1e-51  Score=404.82  Aligned_cols=284  Identities=23%  Similarity=0.271  Sum_probs=226.9

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc----cchhhhhhhhhcccCCCCCCCCcEEEEEeC-ccccc--cc
Q 017957           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQME--IP  114 (363)
Q Consensus        42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn----ig~p~~~~~~~~~~~~~~~~~~d~~VlE~g-~~~l~--~~  114 (363)
                      +.++|+||||||||||++||+++|+..|..+++.||    +|.|.+...        ...++|++|+|+| +++.+  ..
T Consensus        73 ~~~vI~VTGTnGKTTt~~ll~~iL~~~g~~~~t~gn~n~~ig~p~~~l~--------~~~~~~~~VlE~g~s~~g~~~~~  144 (417)
T TIGR01143        73 SGKVIGITGSSGKTTTKEMLAAILSHKYKVFATPGNFNNEIGLPLTLLR--------APGDHDYAVLEMGASHPGEIAYL  144 (417)
T ss_pred             CCCEEEEcCCCchhHHHHHHHHHHhccCcEecCCCcCCCccchhHHHhc--------CCCCCeEEEEEeCCCCCCcHHHH
Confidence            568999999999999999999999999987777787    677776432        2567899999998 44433  23


Q ss_pred             CccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCC-ccEEEeccCC-Ccee--
Q 017957          115 NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-FNLAWIGAFP-GVKI--  190 (363)
Q Consensus       115 ~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~-~~~~~~~~~~-~~~~--  190 (363)
                      ...++|+++|||||++||+|+|||+|+|+++|.++++.+++++.+|+|.|||....+..... .++++||... ++..  
T Consensus       145 ~~~~~p~vaviTNi~~dHld~~gs~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  224 (417)
T TIGR01143       145 AEIAKPDIAVITNIGPAHLEGFGSLEGIAEAKGEILQGLKENGIAVINADDPAFAKFAKRLPNKAILSFGFEGGDFSAAD  224 (417)
T ss_pred             hCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHHHHHhccCCcEEEECCCCCcEEEEE
Confidence            33489999999999999999999999999999999998888899999999998877765433 4577887542 2211  


Q ss_pred             -cccccc-ceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCC
Q 017957          191 -DTEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG  268 (363)
Q Consensus       191 -~~~~~~-~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~  268 (363)
                       .....+ ..+.+...+...   .+.++++|.||++|+++|+  +++..+|+++++|+++|++|+++|||||+.  ..++
T Consensus       225 i~~~~~~~~~~~~~~~~~~~---~~~~~l~G~hn~~N~laAi--a~~~~lGi~~~~i~~~l~~~~~~~gR~e~~--~~~~  297 (417)
T TIGR01143       225 ISYSALGSTGFTLVAPGGEF---EVSLPLLGRHNVMNALAAA--ALALELGIPLEEIAEGLAELKLVKGRFEIQ--TKNG  297 (417)
T ss_pred             EEEcCCCCEEEEEEeCCceE---EEEccCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCceeEE--cCCC
Confidence             011111 223332222111   2468999999999999999  899999999999999999999999999943  4678


Q ss_pred             EEEEEcCCCCCHHHHHHHHhcccC--CcEEEEEcCCCCCCCCCCccchhhhhhhcc-c-CcEEEEEcccchHHHHhhC
Q 017957          269 VTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAKVLNGQESNGFEKLIEPLN-H-HRCVITVCALLFLKIVIQF  342 (363)
Q Consensus       269 ~~iidD~~a~np~s~~~al~~~~~--~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~-~-~~~vi~~G~~~~~~~~~~~  342 (363)
                      +++|||+|||||+|++++|+.++.  +|+++|+|+|.|+|+++. ..|.++++.+. . +|.+|++|+.. ..+.+.+
T Consensus       298 ~~vidDsya~np~s~~~al~~l~~~~~r~i~VlG~~~e~G~~~~-~~~~~l~~~~~~~~~d~vi~~g~~~-~~~~~~~  373 (417)
T TIGR01143       298 LTLIDDTYNANPDSMRAALDALARFPGKKILVLGDMAELGEYSE-ELHAEVGRYANSLGIDLVFLVGEEA-AVIYDSL  373 (417)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEEcCchhcChHHH-HHHHHHHHHHHHcCCCEEEEECHHH-HHHHHhc
Confidence            999999999999999999999862  578999999999998874 46888999885 3 59999999997 5666655

This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.

>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=5.4e-50  Score=381.63  Aligned_cols=308  Identities=20%  Similarity=0.264  Sum_probs=251.4

Q ss_pred             eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeE--eecccch
Q 017957            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNLGN   80 (363)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~--~~gnig~   80 (363)
                      +.+|+|+|++.+||++++|+++++|++++.|++.+.+ +....|+|+||+||||||+||+++|.++|....  .+|.++.
T Consensus        68 ~~VV~s~Ai~~~NpEi~~A~e~~ipi~~r~e~Laelm-~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~~~~  146 (459)
T COG0773          68 DVVVVSNAIKEDNPEIVAALERGIPVISRAEMLAELM-RFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKN  146 (459)
T ss_pred             ceEEEecccCCCCHHHHHHHHcCCCeEcHHHHHHHHH-hCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECccccc
Confidence            4589999999999999999999999999999999998 467899999999999999999999999987652  3443222


Q ss_pred             hhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEE
Q 017957           81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL  160 (363)
Q Consensus        81 p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v  160 (363)
                      .-....         ....+++|+|.++++-.++.  ++|+++|||||..||+|+|++++++.++...+++.++..|.+|
T Consensus       147 ~g~na~---------~g~~~~fV~EADEsD~sFl~--~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~G~~v  215 (459)
T COG0773         147 FGTNAR---------LGSGDYFVAEADESDSSFLH--YNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFYGRAV  215 (459)
T ss_pred             CCcccc---------cCCCceEEEEeccccccccc--CCCCEEEEeCCCcchhhhhCCHHHHHHHHHHHHHhCCccceEE
Confidence            111111         23347899999987644443  7999999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHhc-CCccEEEeccCC--Cceec---cccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHH
Q 017957          161 LPFGNQHLNEAIKG-HRFNLAWIGAFP--GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (363)
Q Consensus       161 ~n~dd~~~~~~~~~-~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~  234 (363)
                      +|.|||.++++... +..++++||.++  ++...   .+..+..|.+...+.  .+..+.++++|+||+.|+++|+  ++
T Consensus       216 ~~~dd~~l~~l~~~~~~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~--~~~~~~l~~pG~HNvlNAlaai--a~  291 (459)
T COG0773         216 VCGDDPNLRELLSRGCWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGE--ELGEVKLPLPGRHNVLNALAAI--AV  291 (459)
T ss_pred             EECCCHHHHHHHhcccCCcEEeecCCCcCcEEEEEeEEeccccEEEEEEcCc--eeEEEEEcCCchhhHHHHHHHH--HH
Confidence            99999999997764 667789999875  44332   233334455555554  3345789999999999999999  89


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc-----CCcEEEEEcCCCCCCCCC
Q 017957          235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-----GHKCVILLGGQAKVLNGQ  309 (363)
Q Consensus       235 ~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-----~~~~i~IlG~~~~~g~~~  309 (363)
                      |..+|++.++|+++|++|+++.+|||+.+ +.+++++||| |+|+|..+++.|++.+     ++|+++|+-...-.  ..
T Consensus       292 a~~~Gi~~~~i~~aL~~F~GvkRRfe~~g-~~~~~~viDD-YaHHPtEI~aTL~aaR~~~~~~~rIvaifQPHryS--Rt  367 (459)
T COG0773         292 ARELGIDPEAIAEALASFQGVKRRFELKG-EVNGVTVIDD-YAHHPTEIKATLAAARQKVPGGKRIVAVFQPHRYS--RT  367 (459)
T ss_pred             HHHcCCCHHHHHHHHHhCCCcceeeEEee-eECCEEEEec-CCCCHHHHHHHHHHHHHhcCCCceEEEEECCCchH--hH
Confidence            99999999999999999999999999997 6889999999 5999999999888763     26889998743211  00


Q ss_pred             CccchhhhhhhcccCcEEEEEc
Q 017957          310 ESNGFEKLIEPLNHHRCVITVC  331 (363)
Q Consensus       310 ~~~~~~~l~~~l~~~~~vi~~G  331 (363)
                       ...++++++.++.+|.|+++.
T Consensus       368 -~~~~~dF~~~l~~AD~v~l~~  388 (459)
T COG0773         368 -RDLLDDFAKALSDADEVILLD  388 (459)
T ss_pred             -HHHHHHHHHHHhcCCEEEEec
Confidence             124677777788899999994

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1.4e-49  Score=385.59  Aligned_cols=285  Identities=25%  Similarity=0.349  Sum_probs=229.7

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~   83 (363)
                      ++|+||+++++||++++|++    +++++|++++..   .++|+||||||||||++||+++|+.+|..  .+||+|.|++
T Consensus        57 ~vv~sp~i~~~~~~~~~a~~----i~~~~e~~~~~~---~~~i~ITGT~GKTTTt~ml~~iL~~~g~~--~~gniG~p~~  127 (401)
T PRK03815         57 LEIPSPGIPPSHPLIQKAKN----LISEYDYFYDVM---PFSIWISGTNGKTTTTQMTTHLLEDFGAV--SGGNIGTPLA  127 (401)
T ss_pred             EEEECCCCCCCCHHHHHHHH----HhhHHHHHHHhc---CCEEEEECCCcHHHHHHHHHHHHHHCCCc--EEEEecHhHH
Confidence            57999999999999999998    799999988765   25999999999999999999999999843  5899999987


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017957           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (363)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~  163 (363)
                      .  .        ..+.|++|+|+|+++++.... ++|+++|||||++||+|+|+|+|+|+++|.+|++++++++.+|+|.
T Consensus       128 ~--~--------~~~~~~~V~E~ss~~~~~~~~-~~p~iavitNi~~dHld~~~s~e~~~~~k~~i~~~~~~~~~~v~n~  196 (401)
T PRK03815        128 E--L--------DKNAKIWVLETSSFTLHYTNK-AKPNIYLLLPITPDHLSWHGSFENYVKAKLKPLKRMNEGDVAILPK  196 (401)
T ss_pred             h--c--------CCCCCEEEEECChHHhhCCcc-CCCcEEEEcCCcccchhhcCCHHHHHHHHHHHHhCCCcCCEEEEec
Confidence            5  2        235589999999988665554 8999999999999999999999999999999999999899999999


Q ss_pred             CChhHHHHHhcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHH
Q 017957          164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE  243 (363)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~  243 (363)
                      ||+...     ...++++||...+..       ..+.+..         ..+.+.+.| ++|+++|+  +++..+|+  +
T Consensus       197 dd~~~~-----~~~~~~~fg~~~~~~-------~~~~~~~---------~~~~~~~~~-~~NalaA~--a~a~~~G~--~  250 (401)
T PRK03815        197 KFKNTP-----TKAQKIFYEDEEDLA-------EKFGIDS---------EKINFKGPF-LLDALLAL--AVYKILFD--E  250 (401)
T ss_pred             cccccc-----cCCcEEEEecCCccc-------cceeEeh---------HhcCCchHH-HHHHHHHH--HHHHHhCc--H
Confidence            998631     124566776321110       0111111         123344554 99999999  89999994  5


Q ss_pred             HHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhhccc
Q 017957          244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH  323 (363)
Q Consensus       244 ~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~~  323 (363)
                      .+.++|++|++++||||++. ..+|+++|||+||+||+|+.+|++.++++|+++|+|+..+.      .+|.++.+.++.
T Consensus       251 ~~~~~L~~f~~~~~R~e~~~-~~~gv~~idDs~~tn~~a~~~al~~~~~~~ii~IlGG~~k~------~~~~~l~~~~~~  323 (401)
T PRK03815        251 LDYERLNAFKIGKHKLEEFR-DKQGRLWVDDSKATNVDATLQALKRYKDKKIHLILGGDDKG------VDLTPLFEFMKN  323 (401)
T ss_pred             HHHHHHHhCCCCCceEEEEE-EECCEEEEECCCCCCHHHHHHHHHhCCCCCEEEEECCCCCC------CCHHHHHHHHHh
Confidence            56678999999999999996 46899999999999999999999999656789999985553      356789888864


Q ss_pred             -CcEEEEEcccchHHHHhhC
Q 017957          324 -HRCVITVCALLFLKIVIQF  342 (363)
Q Consensus       324 -~~~vi~~G~~~~~~~~~~~  342 (363)
                       ...++++|+.. ..+.+.+
T Consensus       324 ~~~~v~~~G~~~-~~~~~~~  342 (401)
T PRK03815        324 LNIELYAIGSNT-EKIQALA  342 (401)
T ss_pred             hCcEEEEECCCH-HHHHHHH
Confidence             33599999986 4555554

>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional

Probab=100.00  E-value=4.3e-50  Score=399.36  Aligned_cols=286  Identities=19%  Similarity=0.184  Sum_probs=225.3

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc----cchhhhhhhhhcccCCCCCCCCcEEEEEeCc-cccc--cc
Q 017957           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSS-YQME--IP  114 (363)
Q Consensus        42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn----ig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~-~~l~--~~  114 (363)
                      +.++|+||||||||||++||+++|+..|.++.+.||    +|.|.+....        ..+.+++|+|+|+ +..+  ..
T Consensus       107 ~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~~n~~iG~p~~l~~~--------~~~~~~~V~E~g~s~~~e~~~~  178 (479)
T PRK14093        107 EAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVASFNNHWGVPLSLARC--------PADARFAVFEIGMNHAGEIEPL  178 (479)
T ss_pred             CCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCccCCCccchhHHHHcC--------CCCCcEEEEEeCCCCCchHHHH
Confidence            568999999999999999999999999988877665    4666653322        3567999999994 4433  33


Q ss_pred             CccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCC----ccEEEeccCC--Cc
Q 017957          115 NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR----FNLAWIGAFP--GV  188 (363)
Q Consensus       115 ~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~----~~~~~~~~~~--~~  188 (363)
                      ...++|+++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+|.|||....+.....    .++++||.+.  ++
T Consensus       179 ~~~~~PdiaViTNI~~DHLd~~gt~e~~~~aK~~l~~~~~~~g~~VlN~Dd~~~~~l~~~~~~~~~~~vi~~g~~~~~~~  258 (479)
T PRK14093        179 VKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDRLAASARAAGIARIVSFGADEKADA  258 (479)
T ss_pred             hcccCCCEEEEcCCCHHHHhhcCCHHHHHHHHHHHHccCCCCCEEEEeCCcHHHHHHHHHhhhccCCcEEEEeCCCCccE
Confidence            44589999999999999999999999999999999998888899999999998877654321    2577888542  22


Q ss_pred             eecc---ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEee
Q 017957          189 KIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD  265 (363)
Q Consensus       189 ~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~  265 (363)
                      ....   ......+.+...+...   .+.++++|.||++|+++|+  +++..+|+++++|+++|++|+++|||+|.+..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~l~~~~~~~gR~~~~r~~  333 (479)
T PRK14093        259 RLLDVALHADCSAVHADILGHDV---TYKLGMPGRHIAMNSLAVL--AAAELAGADLALAALALSQVQPAAGRGVRHTLE  333 (479)
T ss_pred             EEEEEEEcCCceEEEEEECCceE---EEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCcCCcceEEEee
Confidence            1110   1111223332222112   2578999999999999999  899999999999999999999999999987422


Q ss_pred             --cCCEEEEEcCCCCCHHHHHHHHhccc------CCcEEEEEcCCCCCCCCCCccchhhhhhhcc--cCcEEEEEcccch
Q 017957          266 --IQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITVCALLF  335 (363)
Q Consensus       266 --~~~~~iidD~~a~np~s~~~al~~~~------~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~--~~~~vi~~G~~~~  335 (363)
                        .++.++|||+|||||+|++++|+.++      ++|+|+|+|+|.++|..+. ..|+++++.+.  .+|.|+++|+.+ 
T Consensus       334 ~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m~elg~~~~-~~h~~~~~~~~~~~~d~v~~~G~~~-  411 (479)
T PRK14093        334 VGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVLGDMLELGPRGP-ELHRGLAEAIRANAIDLVFCCGPLM-  411 (479)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEECChHHcCcHHH-HHHHHHHHHHHHcCCCEEEEEchhH-
Confidence              34589999999999999999999874      2578999999999998874 56899999986  579999999876 


Q ss_pred             HHHHhhC
Q 017957          336 LKIVIQF  342 (363)
Q Consensus       336 ~~~~~~~  342 (363)
                      +.+.+.+
T Consensus       412 ~~~~~~~  418 (479)
T PRK14093        412 RNLWDAL  418 (479)
T ss_pred             HHHHHhh
Confidence            5666654

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=100.00  E-value=1.5e-47  Score=402.72  Aligned_cols=301  Identities=15%  Similarity=0.178  Sum_probs=233.0

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCC--eEeecccchh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNP   81 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~--~~~~gnig~p   81 (363)
                      ++|+||+++++||++++|+++|+|+++++|++++.. +..++|+||||||||||++||+++|+.+|.+  +..+||+|.|
T Consensus        66 ~vV~SpgI~~~~p~~~~a~~~gi~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~gG~~g~~  144 (809)
T PRK14573         66 VVVYSSSISKDNVEYLSAKSRGNRLVHRAELLAELM-QEQISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIGGLNQEG  144 (809)
T ss_pred             EEEECCCcCCCCHHHHHHHHCCCcEEeHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCccccc
Confidence            689999999999999999999999999999998887 3458999999999999999999999999975  4678888887


Q ss_pred             hhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEE
Q 017957           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGL  160 (363)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v  160 (363)
                      +...          ..+.|++|+|+|+++ .... .++|+++|||||++||+|+| +|+|+|+++|..+++.+++++.+|
T Consensus       145 ~~~~----------~~~~d~~V~E~ss~~-~~~~-~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~V  212 (809)
T PRK14573        145 LNGY----------SGSSEYFVAEADESD-GSLK-HYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCF  212 (809)
T ss_pred             cccc----------cCCCCEEEEECCCCc-chhh-eeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEEE
Confidence            7642          234689999999986 3333 38999999999999999998 799999999999998887889999


Q ss_pred             EeCCChhHHHHHhcCCccEEEeccC--CCce---eccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHH
Q 017957          161 LPFGNQHLNEAIKGHRFNLAWIGAF--PGVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG  235 (363)
Q Consensus       161 ~n~dd~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~  235 (363)
                      +|.||+......     +..+|+..  .++.   +..+.....+.+...+.  .+....++++|.||++|+++|+  +++
T Consensus       213 ~N~Dd~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~--~~~~~~l~l~G~hn~~Na~aAi--a~~  283 (809)
T PRK14573        213 YNGDCPRLKGCL-----QGHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGV--VYQDIELNLVGMHNVANAAAAM--GIA  283 (809)
T ss_pred             EeCCCHHHHhhc-----ccEEEccCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEeccccHhhHHHHHHHH--HHH
Confidence            999999765422     12345432  1211   11111111233222221  1123578899999999999999  889


Q ss_pred             HHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCCCCCCCCCCc
Q 017957          236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQES  311 (363)
Q Consensus       236 ~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~~~~g~~~~~  311 (363)
                      ..+|++.+.|+++|.+|++++||||++. ..+++.+|+| |||||+|++++++.++    .+|+++|+++.....-   +
T Consensus       284 ~~lgi~~~~i~~~L~~f~~~~~R~e~~~-~~~~~~~i~D-~ahnP~~~~a~l~~l~~~~~~~rli~vf~~~~~~~~---~  358 (809)
T PRK14573        284 LTLGIDEGAIRNALKGFSGVQRRLERKN-SSETFLFLED-YAHHPSEISCTLRAVRDAVGLRRIIAICQPHRFSRL---R  358 (809)
T ss_pred             HHcCCCHHHHHHHHHhCCCCCCCCEEEe-ccCCcEEEEE-CCCCHHHHHHHHHHHHhhcCCCEEEEEEcCCcchhH---H
Confidence            9999999999999999999999999996 4567889999 5999999999999874    3578899974433211   1


Q ss_pred             cchhhhhhhcccCcEEEEEc
Q 017957          312 NGFEKLIEPLNHHRCVITVC  331 (363)
Q Consensus       312 ~~~~~l~~~l~~~~~vi~~G  331 (363)
                      .++.++...+..+|.++++.
T Consensus       359 ~~~~~~~~~l~~~d~vilt~  378 (809)
T PRK14573        359 ECLDSFPSAFQDADEVILTD  378 (809)
T ss_pred             HHHHHHHHHHHHCCEEEECC
Confidence            12344445555688888853

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=2.2e-47  Score=374.28  Aligned_cols=292  Identities=24%  Similarity=0.380  Sum_probs=229.0

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCC-CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL   82 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~   82 (363)
                      ++|.+++++++||.+++|+++|++++++.+++++... ++.++|+||||||||||++||+++|+..|.++.+.||+|.|+
T Consensus        62 lvV~s~gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG~p~  141 (418)
T PRK00683         62 LVVRSPGIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIPI  141 (418)
T ss_pred             EEEECCCCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcCHHH
Confidence            6899999999999999999999999999998765421 246799999999999999999999999999999999999998


Q ss_pred             hhhhhhcccCCCCCCCCcEEEEEeCcccccccCc-cccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEE
Q 017957           83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (363)
Q Consensus        83 ~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~-~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~  161 (363)
                      ...          ..+.+++|+|+|++++..... ..+|+++|||||++||+|+|+|+|+|+++|.+++..+...     
T Consensus       142 l~~----------~~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~s~e~y~~aK~~i~~~~~~~-----  206 (418)
T PRK00683        142 LDG----------MQQPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHGNLSAYFQAKQNIAKCLRNP-----  206 (418)
T ss_pred             HHH----------hhcCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCCCHHHHHHHHHHHHHhhhCc-----
Confidence            432          124688999999998775443 2344899999999999999999999999999999865322     


Q ss_pred             eCCChhHHHHHhcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHH-cCC
Q 017957          162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IGV  240 (363)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~-lgi  240 (363)
                        |+....        ...+|+..  +.  .... ..+.....+       ..++++|.||++|+++|+  +++.. +|+
T Consensus       207 --~~~~~~--------~~~~~~~~--~~--~~~~-~~~~~~~~~-------~~~~~~g~hn~~Na~aA~--a~~~~l~g~  262 (418)
T PRK00683        207 --DDLWVG--------DERSYGHS--YL--EYVQ-EIMRLLDKG-------SALKPLYLHDRYNYCAAY--ALANEVFPI  262 (418)
T ss_pred             --cccccc--------ccCCcCce--ee--cCcc-hhhhhhccc-------cccCCCccchHHHHHHHH--HHHHHhcCC
Confidence              221110        01122211  00  0000 000000011       246789999999999999  78888 699


Q ss_pred             CHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhh
Q 017957          241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP  320 (363)
Q Consensus       241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~  320 (363)
                      +.++|+++|++|++++||||++. ..++..+|||+||+||+|++++++.++ +|+++|+|+|.+.++      +.++++.
T Consensus       263 ~~~~i~~~l~~~~~~~~R~e~v~-~~~g~~~i~Ds~~t~~~s~~~al~~~~-~~~i~vlG~~~~~~d------~~~l~~~  334 (418)
T PRK00683        263 SEESFLEAVATFEKPPHRMEYLG-EKDGVHYINDSKATTVSAVEKALLAVG-NQVIVILGGRNKGCD------FSSLLPV  334 (418)
T ss_pred             CHHHHHHHHHhCCCCCCceEEEe-ecCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCCC------HHHHHHH
Confidence            99999999999999999999996 457899999999999999999999875 578999999988765      5578877


Q ss_pred             cc-cCcEEEEEcccchHHHHhhCC
Q 017957          321 LN-HHRCVITVCALLFLKIVIQFP  343 (363)
Q Consensus       321 l~-~~~~vi~~G~~~~~~~~~~~~  343 (363)
                      +. .++.++++|+.. ..+.+.+.
T Consensus       335 ~~~~~~~v~~~G~~~-~~i~~~l~  357 (418)
T PRK00683        335 LRQTAKHVVAMGECR-QEIAQALS  357 (418)
T ss_pred             HHHhCCEEEEECCCH-HHHHHHHh
Confidence            65 489999999886 56777664

>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional

Probab=100.00  E-value=2.3e-47  Score=408.92  Aligned_cols=286  Identities=20%  Similarity=0.233  Sum_probs=226.9

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHhc---CCCeEeecc----cchhhhhhhhhcccCCCCCCCCcEEEEEeCcc---cc
Q 017957           42 SIKILAVTGTNGKSTVVTFVGQMLNHL---GIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY---QM  111 (363)
Q Consensus        42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~---g~~~~~~gn----ig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~---~l  111 (363)
                      +.++|+||||||||||++||+++|+..   +....+.||    +|.|++....        ..+.|++|+|+|++   ++
T Consensus       602 ~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn~n~~~g~~~~l~~~--------~~~~~~~VlE~s~~~~g~~  673 (958)
T PRK11929        602 SLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLTLLRL--------RAQHRAAVFELGMNHPGEI  673 (958)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcccCCCcchHHHHhcC--------CCCCcEEEEEeCCCCCccH
Confidence            568999999999999999999999998   445567777    6777654322        45679999999964   66


Q ss_pred             cccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcC-CccEEEeccCCC--c
Q 017957          112 EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFPG--V  188 (363)
Q Consensus       112 ~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~--~  188 (363)
                      +.+..+++|+++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+|.||+....+.... ..++++||...+  +
T Consensus       674 ~~~~~~~~pdiaViTNI~~dHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~~~~~~~~~~~fg~~~~~~~  753 (958)
T PRK11929        674 AYLAAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADV  753 (958)
T ss_pred             HHHhCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHccCCCCCEEEEECCcHHHHHHHHhhcCCcEEEEeCCCCcce
Confidence            6655557999999999999999999999999999999999888889999999999887765433 335678875321  1


Q ss_pred             eec---c-----ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeE
Q 017957          189 KID---T-----EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ  260 (363)
Q Consensus       189 ~~~---~-----~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e  260 (363)
                      ...   .     ......+.+...+...   .+.++++|.||++|+++|+  +++..+|+++++|+++|++|+++|||||
T Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~f~~~~gR~e  828 (958)
T PRK11929        754 YAEKIAKDISVGEAGGTRCQVVTPAGSA---EVYLPLIGEHNLRNALAAI--ACALAAGASLKQIRAGLERFQPVAGRMQ  828 (958)
T ss_pred             EeeecccceeecCCCceEEEEEECCceE---EEEeCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCCce
Confidence            110   0     0011122222111111   2478999999999999999  8999999999999999999999999999


Q ss_pred             EEEeecCCEEEEEcCCCCCHHHHHHHHhcccC---CcEEEEEcCCCCCCCCCCccchhhhhhhcc--cCcEEEEEcccch
Q 017957          261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKG---HKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITVCALLF  335 (363)
Q Consensus       261 ~~~~~~~~~~iidD~~a~np~s~~~al~~~~~---~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~--~~~~vi~~G~~~~  335 (363)
                      ++. ..+++.+|||+|||||+|++++|+.++.   +|+++|+|+|.|+|+++. ..|.++++.+.  ..+.++++|+.+ 
T Consensus       829 ~~~-~~~~~~iidDsya~np~s~~aaL~~l~~~~~~~~i~VlG~~~e~g~~~~-~~h~~~g~~~~~~~~~~vi~~Ge~~-  905 (958)
T PRK11929        829 RRR-LSCGTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLGDMLELGDNGP-AMHREVGKYARQLGIDALITLGEAA-  905 (958)
T ss_pred             EEE-cCCCcEEEEcCCCCCHHHHHHHHHHHHhccCCCEEEEECCchhcCcHHH-HHHHHHHHHHHHcCCCEEEEECcCH-
Confidence            996 3578899999999999999999999852   578999999999998874 45788888764  478999999997 


Q ss_pred             HHHHhhCC
Q 017957          336 LKIVIQFP  343 (363)
Q Consensus       336 ~~~~~~~~  343 (363)
                      ..+.+.+.
T Consensus       906 ~~i~~~~~  913 (958)
T PRK11929        906 RDAAAAFG  913 (958)
T ss_pred             HHHHHhhh
Confidence            57777664

>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional

Probab=100.00  E-value=7.2e-47  Score=398.44  Aligned_cols=283  Identities=17%  Similarity=0.212  Sum_probs=222.6

Q ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeec----ccchhhhhhhhhcccCCCCCCCCcEEEEEeCcccc---cc
Q 017957           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG----NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQM---EI  113 (363)
Q Consensus        41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g----nig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l---~~  113 (363)
                      .+.++||||||||||||++||+++|+..|.++++.+    ++|+|.+....        ..+++++|+|+|+++.   +.
T Consensus       105 ~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~~~~~~n~~ig~p~~~~~~--------~~~~~~~V~E~s~s~~~~~~~  176 (822)
T PRK11930        105 FDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQL--------NEEHELGIFEAGISQPGEMEA  176 (822)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHhccCcEecCCcccCcchhHHHHHhcC--------CCCCcEEEEEeCCCCCChHHH
Confidence            467899999999999999999999999887766544    47888764332        4578999999996543   33


Q ss_pred             cCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcC--CccEEEeccCC---Cc
Q 017957          114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH--RFNLAWIGAFP---GV  188 (363)
Q Consensus       114 ~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~--~~~~~~~~~~~---~~  188 (363)
                      +..+++|+++|||||++||+|+|+|+|+|+++|.++++.   .+.+|+|.||+....+....  ..++++||...   ++
T Consensus       177 l~~~~~PdiaViTNI~~dHLd~~gt~e~y~~aK~~i~~~---~~~~vin~Dd~~~~~~~~~~~~~~~~~~~g~~~~~~d~  253 (822)
T PRK11930        177 LQKIIKPTIGILTNIGGAHQENFRSIKQKIMEKLKLFKD---CDVIIYNGDNELISSCITKSNLTLKLISWSRKDPEAPL  253 (822)
T ss_pred             HhhhhCCCEEEEcCccHHHHhhcCCHHHHHHHHHHHhcC---CCEEEEeCCCHHHHHHHHhhhcCCcEEEEcCCCCCCcE
Confidence            334589999999999999999999999999999999984   57899999999887655322  23567887531   22


Q ss_pred             eec---cccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEee
Q 017957          189 KID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD  265 (363)
Q Consensus       189 ~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~  265 (363)
                      ...   .......+.+...+...   .+.++++|+||++|+++|+  +++..+|+++++|+++|++|+++|||||++. .
T Consensus       254 ~~~~i~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~f~~~~gR~e~~~-~  327 (822)
T PRK11930        254 YIPFVEKKEDHTVISYTYKGEDF---HFEIPFIDDASIENLIHCI--AVLLYLGYSADQIQERMARLEPVAMRLEVKE-G  327 (822)
T ss_pred             EEEEEEEcCCceEEEEEeCCceE---EEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCeeEEEE-c
Confidence            111   11112233333222221   3578999999999999999  8899999999999999999999999999996 4


Q ss_pred             cCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCCCCCCCCCCccchhhhhhhcc--cCcEEEEEcccchHHHH
Q 017957          266 IQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITVCALLFLKIV  339 (363)
Q Consensus       266 ~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~--~~~~vi~~G~~~~~~~~  339 (363)
                      .+++.+|||+|||||+|++++|+.++    ++++++|+|+|.++|..+ ...|+++++.++  .++.+|++|+.+ ..+.
T Consensus       328 ~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~~~~~ilIlG~m~elG~~~-~~~~~~l~~~l~~~~i~~vi~~G~~~-~~~~  405 (822)
T PRK11930        328 INNCTLINDSYNSDLQSLDIALDFLNRRSQSKKKTLILSDILQSGQSP-EELYRKVAQLISKRGIDRLIGIGEEI-SSEA  405 (822)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEECChHhcCchH-HHHHHHHHHHHHHcCCCEEEEECHHH-HHHH
Confidence            57899999999999999999999985    247899999999988766 357889999886  389999999986 4555


Q ss_pred             hhC
Q 017957          340 IQF  342 (363)
Q Consensus       340 ~~~  342 (363)
                      +.+
T Consensus       406 ~~~  408 (822)
T PRK11930        406 SKF  408 (822)
T ss_pred             Hhc
Confidence            544

>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional

Probab=100.00  E-value=4.8e-46  Score=368.93  Aligned_cols=270  Identities=25%  Similarity=0.295  Sum_probs=205.5

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhh-cccCC-----------CCCCCCcEEEEEeCcc
Q 017957           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFH-CIALP-----------SSKPKFQVAVVEVSSY  109 (363)
Q Consensus        42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~-~~~~~-----------~~~~~~d~~VlE~g~~  109 (363)
                      +.++||||||||||||++||+++|++.|.++++.||++.++...... ..+++           ..+.++|++|+|+|++
T Consensus        94 ~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~~~i~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~  173 (460)
T PRK00139         94 KLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNGIGGELIPSGLTTPDALDLQRLLAELVDAGVTYAAMEVSSH  173 (460)
T ss_pred             ccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcccccCCeecccCCCCcCHHHHHHHHHHHHHCCCCEEEEEcchh
Confidence            56899999999999999999999999999999999987765432110 00010           0145789999999987


Q ss_pred             ccc--ccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCccEEEeccC--
Q 017957          110 QME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF--  185 (363)
Q Consensus       110 ~l~--~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~--  185 (363)
                      +++  .+.. ++|+++|||||++||+++|||+|+|+++|++|++...  +.+|+|.||+....+...    +.+|+..  
T Consensus       174 ~~~~~~l~~-~~p~iaViTnI~~dHl~~~gt~e~i~~~K~~i~~~~~--~~~v~n~dd~~~~~~~~~----~~~~~~~~~  246 (460)
T PRK00139        174 ALDQGRVDG-LKFDVAVFTNLSRDHLDYHGTMEDYLAAKARLFSELG--LAAVINADDEVGRRLLAL----PDAYAVSMA  246 (460)
T ss_pred             hHhhchhcC-CcCCEEEEcCCCcccCCcCCCHHHHHHHHHHHHhcCC--CeEEEEcCcHhHHHHHhh----cEEEEecCC
Confidence            654  3334 7999999999999999999999999999999998642  489999999987766541    3445432  


Q ss_pred             -CCceeccccccceEEEecCCeEEEEE-eeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEE
Q 017957          186 -PGVKIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH  263 (363)
Q Consensus       186 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~  263 (363)
                       .++..      ..+.....+..+.+. .+.++++|.||++|+++|+  +++..+|+++++|+++|++|+++|||||++.
T Consensus       247 ~~~~~~------~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~~~~i~~~L~~~~~~~gR~e~~~  318 (460)
T PRK00139        247 GADLRA------TDVEYTDSGQTFTLVTEVESPLIGRFNVSNLLAAL--AALLALGVPLEDALAALAKLQGVPGRMERVD  318 (460)
T ss_pred             CCcEEE------EEEEEecCceEEEEEEEEEecccchhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCCcEEEE
Confidence             11111      112222223233332 4578999999999999999  8999999999999999999999999999996


Q ss_pred             eecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchhhhhhhc-cc-CcEEEEEccc
Q 017957          264 RDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPL-NH-HRCVITVCAL  333 (363)
Q Consensus       264 ~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l-~~-~~~vi~~G~~  333 (363)
                       ..+++++|+| |||||+|++++++.++   ++|+++|+|+..++.     ..|+++...+ .. .|.++++++.
T Consensus       319 -~~~~~~iI~D-yahNP~s~~aal~~l~~~~~~r~i~VlG~g~~k~-----~~~~~~~~~~~~~~~d~vi~~~~~  386 (460)
T PRK00139        319 -AGQGPLVIVD-YAHTPDALEKVLEALRPHAKGRLICVFGCGGDRD-----KGKRPLMGAIAERLADVVIVTSDN  386 (460)
T ss_pred             -cCCCCEEEEE-CCCCHHHHHHHHHHHHhhcCCcEEEEECCCCCCc-----hhhhHHHHHHHHHcCCEEEEECCC
Confidence             3468899999 7999999999999985   357899999744432     2455555544 33 6888888865

>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase

Probab=100.00  E-value=1.7e-45  Score=365.86  Aligned_cols=280  Identities=24%  Similarity=0.322  Sum_probs=206.3

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhh----hcccCC-----------CCCCCCcEEEEEe
Q 017957           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF----HCIALP-----------SSKPKFQVAVVEV  106 (363)
Q Consensus        42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~----~~~~~~-----------~~~~~~d~~VlE~  106 (363)
                      +.++|+||||||||||++||+++|+..|.++++.|+.|.+......    ..++++           ..+.+.|++|+|+
T Consensus        84 ~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~n~~ig~p~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~  163 (464)
T TIGR01085        84 KLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTLQSTLAEMVEAGAQYAVMEV  163 (464)
T ss_pred             ccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECCeeeecCcccCCCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence            5689999999999999999999999999998777776655321100    000000           0135779999999


Q ss_pred             Cccccc--ccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCccEEEecc
Q 017957          107 SSYQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA  184 (363)
Q Consensus       107 g~~~l~--~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~  184 (363)
                      |+++++  .+.. ++|+++|||||++||+++|||+|+|+++|.++++.+++++.+|+|.||+....+.......+.+...
T Consensus       164 g~~~~~~~~l~~-~~p~iaviTnI~~dHl~~~gs~e~i~~~K~~i~~~~~~~g~~v~n~dd~~~~~~~~~~~~~~~~~~~  242 (464)
T TIGR01085       164 SSHALAQGRVRG-VRFDAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKRLPKDITVSAI  242 (464)
T ss_pred             cHHHHhhCCccC-ceeCEEEEccCCCCCCcccCCHHHHHHHHHHHhccccCCCeEEEEcCCHHHHHHHHhcCCCeEEEEe
Confidence            986554  4444 7999999999999999999999999999999999988788999999999887776443332222211


Q ss_pred             CC-------Cceecc---ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcC-CCHHHHHHHhhcCC
Q 017957          185 FP-------GVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG-VDVEALNSTIEILR  253 (363)
Q Consensus       185 ~~-------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lg-i~~~~i~~~l~~~~  253 (363)
                      ..       ++....   ...+..+.+...+...   .+.++++|.||++|+++|+  +++..+| +++++|+++|++|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a~a~~lg~i~~e~i~~~L~~~~  317 (464)
T TIGR01085       243 TQPADGRAQDIKITDSGYSFEGQQFTFETPAGEG---HLHTPLIGRFNVYNLLAAL--ATLLHLGGIDLEDIVAALEKFR  317 (464)
T ss_pred             cCCCccccccEEEEEEEEecCceEEEEEeCCceE---EEEecCccHhHHHHHHHHH--HHHHHcCCCCHHHHHHHHHhCC
Confidence            11       111100   0011122222211111   2468999999999999999  8899999 99999999999999


Q ss_pred             CCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchhhhhhhcc--cCcEEE
Q 017957          254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVI  328 (363)
Q Consensus       254 ~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~--~~~~vi  328 (363)
                      ++|||||++. ..+++.+|+| |||||+||+++++.++   ++|+++|+|...+.     ...|+++.+.+.  ..|.++
T Consensus       318 ~~~gR~e~~~-~~~g~~vi~D-y~~NP~s~~aal~~l~~~~~~r~i~VlGlg~~~-----~~~~~~~~~~~~~~~~d~vi  390 (464)
T TIGR01085       318 GVPGRMELVD-GGQKFLVIVD-YAHTPDALEKALRTLRKHKDGRLIVVFGCGGDR-----DRGKRPLMGAIAEQLADLVI  390 (464)
T ss_pred             CCCCCcEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCcEEEEECCCCCC-----CcchhHHHHHHHHhcCCEEE
Confidence            9999999996 3467899999 7999999999999984   35789999922222     134777777664  368999


Q ss_pred             EEcccc
Q 017957          329 TVCALL  334 (363)
Q Consensus       329 ~~G~~~  334 (363)
                      ++|+..
T Consensus       391 ~~g~~~  396 (464)
T TIGR01085       391 LTSDNP  396 (464)
T ss_pred             EeCCCc
Confidence            998864

A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.

>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional

Probab=100.00  E-value=4.8e-45  Score=363.68  Aligned_cols=284  Identities=23%  Similarity=0.269  Sum_probs=205.0

Q ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeeccc----c---------hhhhhhhhhcccCCCCCCCCcEEEEEeC
Q 017957           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL----G---------NPLSEAAFHCIALPSSKPKFQVAVVEVS  107 (363)
Q Consensus        41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gni----g---------~p~~~~~~~~~~~~~~~~~~d~~VlE~g  107 (363)
                      .+.++||||||||||||++||+++|+..|.++++.|+.    |         .|.....++.. ....+.+.+++|+|+|
T Consensus       108 ~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~ig~~~~~~~~~~p~~~~l~~~~-~~~~e~g~~~~v~Evs  186 (481)
T PRK14022        108 HKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGETFFKSALTTPESLDLFKMM-AEAVDNGMTHLIMEVS  186 (481)
T ss_pred             hccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeeeeccCCeeeeCCCCCchHHHHHHHH-HHHHHCCCCEEEEEec
Confidence            35689999999999999999999999999888766653    2         45221110000 0012346789999999


Q ss_pred             ccccc--ccCccccccEEEEeCCChhhhcc--CCCHHHHHHHHHHhcccCCCCcEEEEeCC-ChhHHHHHhcCCccEEEe
Q 017957          108 SYQME--IPNKYFCPTVSVVLNLTPDHLER--HKTMKNYALTKCHLFSHMVNTKLGLLPFG-NQHLNEAIKGHRFNLAWI  182 (363)
Q Consensus       108 ~~~l~--~~~~~~~p~i~viTnI~~dHl~~--~gt~e~~~~~K~~i~~~~~~~~~~v~n~d-d~~~~~~~~~~~~~~~~~  182 (363)
                      |+++.  .+.. ++|+++|||||++||+|+  |+|+|+|+.+|++|++   +++.+|+|.| ++...........++++|
T Consensus       187 S~~~~~~r~~~-~~pdiaViTNI~~DHld~L~~~t~e~~a~aK~~i~~---~~~~~Vln~d~d~~~~~~~~~~~~~~~~~  262 (481)
T PRK14022        187 SQAYLVGRVYG-LTFDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSELLEQVTPQEHDFY  262 (481)
T ss_pred             hhHHHhccccC-ccccEEEEcCCCcccCCCCCCCCHHHHHHHHHHHhc---CCCEEEEEcCCCHHHHHHHHhcCCCEEEE
Confidence            87532  2323 799999999999999999  8899999999999997   4789999998 554332222223356778


Q ss_pred             ccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEE
Q 017957          183 GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV  262 (363)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~  262 (363)
                      |......+...   ..+.+...+..  ...+.++++|.||++|+++|+  +++..+|+++++|+++|++ .++|||||++
T Consensus       263 g~~~~~~~~~~---~~~~~~~~~~~--~~~~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~i~~~L~~-~~~~gR~e~i  334 (481)
T PRK14022        263 GIDSENQIMAS---NAFSFEATGKL--AGTYDIQLIGKFNQENAMAAG--LACLRLGASLEDIQKGIAQ-TPVPGRMEVL  334 (481)
T ss_pred             ecCCccceEEE---EEEEEEEcccC--CceEEEEEechhhHHHHHHHH--HHHHHcCCCHHHHHHHhcc-CCCCCCeEEE
Confidence            75321111100   02333211110  011356799999999999999  8899999999999999999 8999999999


Q ss_pred             EeecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchhhhhhhcccC-c-EEEEEcccc---
Q 017957          263 HRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-R-CVITVCALL---  334 (363)
Q Consensus       263 ~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~~~-~-~vi~~G~~~---  334 (363)
                      . ..+++.+|+| |||||+|++++++.++   ++|+++|+|+|.++|...    +.++++.+... + .++++++..   
T Consensus       335 ~-~~~g~~vi~D-yahNP~s~~aal~~l~~~~~~r~i~V~G~~~e~g~~~----~~~~~~~~~~~~~~~vi~~~~~~r~e  408 (481)
T PRK14022        335 T-QSNGAKVFID-YAHNGDSLNKLIDVVEEHQKGKLILLLGAAGNKGESR----RPDFGRVANRHPYLQVILTADDPNNE  408 (481)
T ss_pred             E-CCCCCEEEEE-CCCCHHHHHHHHHHHhhhCCCCEEEEECCCCCCCcch----hHHHHHHHHhcCCceEEEccCCCCCC
Confidence            6 3467889999 7999999999999884   458999999999987643    56788877643 3 388887542   


Q ss_pred             -hHHHHhhCC
Q 017957          335 -FLKIVIQFP  343 (363)
Q Consensus       335 -~~~~~~~~~  343 (363)
                       ...+.+.+.
T Consensus       409 ~~~~i~~~i~  418 (481)
T PRK14022        409 DPKMITQEIA  418 (481)
T ss_pred             CHHHHHHHHH
Confidence             145666553

>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional

Probab=100.00  E-value=3.1e-43  Score=377.08  Aligned_cols=281  Identities=22%  Similarity=0.282  Sum_probs=210.5

Q ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhh-cccCC-----------CCCCCCcEEEEEeCc
Q 017957           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFH-CIALP-----------SSKPKFQVAVVEVSS  108 (363)
Q Consensus        41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~-~~~~~-----------~~~~~~d~~VlE~g~  108 (363)
                      ++.++||||||||||||++||+++|+..|.++++.||+|.++....+. .++++           ..+.++|++|+|+|+
T Consensus       110 ~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~i~~~~i~~~~t~~~~~~~~~~l~~~~~~~~~~~VlE~ss  189 (958)
T PRK11929        110 EQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGARLDGRLIPGSLTTPDAIILHRILARMRAAGADAVAMEASS  189 (958)
T ss_pred             hccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCccccCCCeeeecCCCCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            356899999999999999999999999999999999988765332111 01111           114578999999998


Q ss_pred             cccc--ccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCC--ccEEEecc
Q 017957          109 YQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR--FNLAWIGA  184 (363)
Q Consensus       109 ~~l~--~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~--~~~~~~~~  184 (363)
                      ++++  .+.. ++|+++|||||++||+++|||+|+|+++|++|++.+++++.+|+|.|||....+.....  ..+.+++.
T Consensus       190 ~~l~~~rl~~-~~p~iaviTnI~~dHl~~~gt~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~  268 (958)
T PRK11929        190 HGLEQGRLDG-LRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGLGAAVINADDPAAARLLAALPRGLKVGYSPQ  268 (958)
T ss_pred             chHhhCcccc-cccCEEEEeCCCccccccCCCHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHHHHHcCCCceEEEEee
Confidence            7664  3334 69999999999999999999999999999999998888899999999998877764332  23444543


Q ss_pred             C--CCceec---cccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCee
Q 017957          185 F--PGVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM  259 (363)
Q Consensus       185 ~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~  259 (363)
                      .  .++...   ....+..+.+...+....   +.++++|.||++|+++|+  +++..+|+++++|+++|++|+++||||
T Consensus       269 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~I~~~L~~~~~~~gR~  343 (958)
T PRK11929        269 NAGADVQARDLRATAHGQVFTLATPDGSYQ---LVTRLLGRFNVSNLLLVA--AALKKLGLPLAQIARALAAVSPVPGRM  343 (958)
T ss_pred             CCCccEEEEEEEEcCCceEEEEEeCCceEE---EEecCccHhhHHHHHHHH--HHHHHcCCCHHHHHHHHhcCCCCCCCc
Confidence            2  122211   111122333332222222   468999999999999999  889999999999999999999999999


Q ss_pred             EEEE--eecCCEEEEEcCCCCCHHHHHHHHhccc------CCcEEEEEcCCCCCCCCCCccchhhhhhhc-c-cCcEEEE
Q 017957          260 QIVH--RDIQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQAKVLNGQESNGFEKLIEPL-N-HHRCVIT  329 (363)
Q Consensus       260 e~~~--~~~~~~~iidD~~a~np~s~~~al~~~~------~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l-~-~~~~vi~  329 (363)
                      |++.  ...+++.+|+| |||||+|++++++.++      ++|+++|+|+..++.     ..++++...+ . .+|.+++
T Consensus       344 e~i~~~~~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~~~~r~i~V~g~g~~r~-----~~~~~~~~~~~~~~~d~vi~  417 (958)
T PRK11929        344 ERVGPTAGAQGPLVVVD-YAHTPDALAKALTALRPVAQARNGRLVCVFGCGGDRD-----KGKRPEMGRIAAELADRVVV  417 (958)
T ss_pred             EEeccccCCCCCEEEEE-CCCCHHHHHHHHHHHHHhcccCCCcEEEEECCCCCCC-----cchhHHHHHHHHHhCCEEEE
Confidence            9993  12467889999 6999999999999885      257899999765442     2466666655 3 3788887


Q ss_pred             Eccc
Q 017957          330 VCAL  333 (363)
Q Consensus       330 ~G~~  333 (363)
                      +.+.
T Consensus       418 t~~~  421 (958)
T PRK11929        418 TSDN  421 (958)
T ss_pred             cCCC
Confidence            6543

>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase

Probab=100.00  E-value=1.6e-42  Score=337.96  Aligned_cols=268  Identities=21%  Similarity=0.246  Sum_probs=199.0

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeeccc------------chhhhhhhhhc--------c-c---CC----
Q 017957           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFHC--------I-A---LP----   93 (363)
Q Consensus        42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gni------------g~p~~~~~~~~--------~-~---~~----   93 (363)
                      +.++||||||||||||+.||+++|++.|++++++++.            |.+++...+..        . +   ++    
T Consensus        17 ~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~fe   96 (397)
T TIGR01499        17 LYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQVRPILEKLSQQPTYFE   96 (397)
T ss_pred             hCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHHHHHHHHHHhccCCCCHHH
Confidence            5689999999999999999999999999999887762            55554422210        0 0   11    


Q ss_pred             ---------CCCCCCcEEEEEeCc-ccccccCccccccEEEEeCCChhhhccCC-CHHHHHHHHHHhcccCCCCcEEEEe
Q 017957           94 ---------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLP  162 (363)
Q Consensus        94 ---------~~~~~~d~~VlE~g~-~~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~~~v~n  162 (363)
                               ..+.++|++|+|+|. |++|.++. ++|+++|||||+.||+++|| |+|+|+.+|++|++   +++.+|+|
T Consensus        97 ~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~-i~p~vaViTnI~~DHl~~lG~t~e~ia~~Ka~I~k---~~~~~v~~  172 (397)
T TIGR01499        97 LLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNV-IEPLVSVITSIGLDHTEILGDTLEEIAWEKAGIIK---EGVPIVTG  172 (397)
T ss_pred             HHHHHHHHHHHHCCCCEEEEeecCCCCcccccc-cCCCeEEEccccHHHHHHhCccHHHHHHHHhCccC---CCCCEEEc
Confidence                     235789999999996 57887776 78999999999999999999 99999999999998   46789999


Q ss_pred             CCChhHHHHHh----cCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHc
Q 017957          163 FGNQHLNEAIK----GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI  238 (363)
Q Consensus       163 ~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~l  238 (363)
                      .|++....+..    ....++++++.+  +..... ....+.+.....  ....+.++++|.||++|+++|+  +++..+
T Consensus       173 ~d~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~--~~~~~~~~l~G~~~~~N~~~Ai--aa~~~l  245 (397)
T TIGR01499       173 PQEPEALNVLKKKAQEKGAPLFVVGRD--FNYSET-DENYLSFSGANL--FLEPLALSLLGDHQAENAALAL--AALEVL  245 (397)
T ss_pred             CCChHHHHHHHHHHHHcCCCEEEeccc--eeeccc-ccceEEeecccc--cccccCCCCCCHHHHHHHHHHH--HHHHHH
Confidence            99987765432    223455666532  211110 012233321110  1112467899999999999999  778887


Q ss_pred             CC-----CHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCCCCCCCCC
Q 017957          239 GV-----DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQ  309 (363)
Q Consensus       239 gi-----~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~~~~g~~~  309 (363)
                      |.     ++++|+++|+++. +|||||++.  .++..+|.|+ ||||+|++++++.++    ++++++|+|++.++    
T Consensus       246 g~~~~~i~~~~i~~~L~~~~-~pGR~e~i~--~~~~~viiD~-AHNp~a~~~~l~~l~~~~~~~~i~~V~G~~~dk----  317 (397)
T TIGR01499       246 GKQRPKLSEEAIRKGLANTI-WPGRLEILS--EDNPNILLDG-AHNPHSAEALAEWFKKRFNGRPIILLFGALADK----  317 (397)
T ss_pred             HhccCCCCHHHHHHHHHhCC-CCceEEEEe--cCCCEEEEEC-CCCHHHHHHHHHHHHHhcCCCCeEEEEEeeCCC----
Confidence            75     5899999999998 599999995  3456777885 999999999999884    34788999988654    


Q ss_pred             Cccchhhhhhhccc-CcE-EEEEc
Q 017957          310 ESNGFEKLIEPLNH-HRC-VITVC  331 (363)
Q Consensus       310 ~~~~~~~l~~~l~~-~~~-vi~~G  331 (363)
                         ++.++.+.+.+ ++. ++++.
T Consensus       318 ---d~~~~~~~l~~~~~~d~~~~~  338 (397)
T TIGR01499       318 ---DAAAMLAPLKPVVDKEVFVTP  338 (397)
T ss_pred             ---CHHHHHHHHhhccCcEEEEEC
Confidence               57788887654 555 66664

A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.

>TIGR02068 cya_phycin_syn cyanophycin synthetase

Probab=100.00  E-value=4.8e-40  Score=345.74  Aligned_cols=283  Identities=18%  Similarity=0.206  Sum_probs=209.2

Q ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhhc--------ccCCCCCCCCcEEEEEeCcccc-
Q 017957           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC--------IALPSSKPKFQVAVVEVSSYQM-  111 (363)
Q Consensus        41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~~--------~~~~~~~~~~d~~VlE~g~~~l-  111 (363)
                      .+.|+|+||||||||||++||+++|+..|+++++.++.|..+....+..        ...-..++++|++|+|+|++++ 
T Consensus       477 ~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~~i~~~~i~~g~~t~p~sa~~~l~~~~vd~aVlE~~~ggil  556 (864)
T TIGR02068       477 GRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARRILMDPTVDAAVLETARGGIL  556 (864)
T ss_pred             CceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCceEECCEEEecCCCCChHHHHHHhhCCCCCEEEEEccCCchh
Confidence            3568999999999999999999999999999987655443222111000        0000135678999999998765 


Q ss_pred             cccCccccccEEEEeCCChhhhccC--CCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCccEEEeccCCCce
Q 017957          112 EIPNKYFCPTVSVVLNLTPDHLERH--KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVK  189 (363)
Q Consensus       112 ~~~~~~~~p~i~viTnI~~dHl~~~--gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~  189 (363)
                      +....+.+|+++|||||+.||++++  +|+|+|+.+|+.+++.+++++.+|+|.|||.+..++..+..++++|+.+.+..
T Consensus       557 ~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~g~~VlNaDd~~~~~~a~~~~~~vi~f~~~~~~~  636 (864)
T TIGR02068       557 REGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPDGYAVLNADDPMVAAMAEKCKGKIAYFSMDPNNP  636 (864)
T ss_pred             hccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHhCCCCEEEEecCCCCh
Confidence            4445546899999999999999865  59999999999999988889999999999998888766667788888543211


Q ss_pred             -----eccccc-----cceEEEecCCeEE---EEEeeccCCCc--hhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 017957          190 -----IDTEAK-----TASFEVPAVGVVS---QLQLHNMKVMG--RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT  254 (363)
Q Consensus       190 -----~~~~~~-----~~~~~~~~~~~~~---~~~~~~l~l~G--~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~  254 (363)
                           +.....     ...+....++...   ......+++.|  .||++|+++|+  ++++.+|++++.|+++|++|++
T Consensus       637 ~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~lpl~~~G~g~~nv~NalaAi--aaa~~lgi~~e~I~~gL~~F~~  714 (864)
T TIGR02068       637 TVAAHIADGGRAVYYENGYIVIARGGDEVAIARIAAIPLTMGGRVAFQIENALAAV--AAAWALGVPIELIRAGIRTFDA  714 (864)
T ss_pred             HHHHHHHcCCcEEEEcCCEEEEEecCccccccceeeeccccCCcccchHHHHHHHH--HHHHHcCCCHHHHHHHHHhccc
Confidence                 110100     0011111111111   11123445555  89999999999  8899999999999999999986


Q ss_pred             ----CCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchhhhhhhccc-CcE
Q 017957          255 ----PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRC  326 (363)
Q Consensus       255 ----~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~~-~~~  326 (363)
                          +|||||++.  .+++.+|+| |||||+|++++++.++   .+|+++|+|++.++.+    .++.++++.+.+ +|.
T Consensus       715 ~~~~~pGR~e~~~--~~g~~vI~D-yAHNP~a~~all~~l~~~~~~r~i~Vig~~gdr~~----~~~~~lg~~l~~~~d~  787 (864)
T TIGR02068       715 DAAQAPGRFNLFN--LGGAHVLVD-YGHNPAAIEAVGAAIRNWPARRRIGVIGGPGDRRD----EDLVEQGELLGGAFDQ  787 (864)
T ss_pred             cccCCCCceEEEE--eCCcEEEEE-cCCCHHHHHHHHHHHHhcCCCCEEEEECCCCCCCh----hHHHHHHHHHHHhCCE
Confidence                899999984  467889999 5999999998777763   3578999999976543    357888888864 899


Q ss_pred             EEEEcc
Q 017957          327 VITVCA  332 (363)
Q Consensus       327 vi~~G~  332 (363)
                      +|++.+
T Consensus       788 vil~~~  793 (864)
T TIGR02068       788 IILKED  793 (864)
T ss_pred             EEEEeC
Confidence            998754

Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.

>PLN02913 dihydrofolate synthetase

Probab=100.00  E-value=7e-40  Score=326.47  Aligned_cols=288  Identities=16%  Similarity=0.168  Sum_probs=202.8

Q ss_pred             eeHHHHHHhhCC---CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc------------c--chhhhhhhhhcc-
Q 017957           29 MSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------L--GNPLSEAAFHCI-   90 (363)
Q Consensus        29 l~~~~~~~~~~~---~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn------------i--g~p~~~~~~~~~-   90 (363)
                      |.++..+.+.+.   ++.++|+||||||||||++||++||+++|++++++.+            .  |.|++...+..+ 
T Consensus        58 L~r~~~ll~~LG~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~  137 (510)
T PLN02913         58 LGRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLF  137 (510)
T ss_pred             HHHHHHHHHHcCCchhhCcEEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHH
Confidence            455555555432   3568999999999999999999999999999988766            3  667765543110 


Q ss_pred             -------c----------CC-----------CCCCCCcEEEEEeCc-ccccccCcc--ccccEEEEeCCChhhhccCC-C
Q 017957           91 -------A----------LP-----------SSKPKFQVAVVEVSS-YQMEIPNKY--FCPTVSVVLNLTPDHLERHK-T  138 (363)
Q Consensus        91 -------~----------~~-----------~~~~~~d~~VlE~g~-~~l~~~~~~--~~p~i~viTnI~~dHl~~~g-t  138 (363)
                             .          +.           +.+.++|++|+|+|. |++|.++.+  .+|+++|||||+.||++++| |
T Consensus       138 ~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~T  217 (510)
T PLN02913        138 HGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGS  217 (510)
T ss_pred             HHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhccc
Confidence                   0          00           235789999999996 578988873  23599999999999999999 9


Q ss_pred             HHHHHHHHHHhcccCCCCcEEEEeC-CChhHHHH----HhcCCccEEEeccC-CCceecc-c-cccceEEEec-----CC
Q 017957          139 MKNYALTKCHLFSHMVNTKLGLLPF-GNQHLNEA----IKGHRFNLAWIGAF-PGVKIDT-E-AKTASFEVPA-----VG  205 (363)
Q Consensus       139 ~e~~~~~K~~i~~~~~~~~~~v~n~-dd~~~~~~----~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~-----~~  205 (363)
                      +|+|+.+|++|++   ++.++|++. ..+....+    +.....+++.++.. .++.... . .....+.+..     .+
T Consensus       218 le~IA~eKagIik---~g~pvV~~~~~~~~~~~vi~~~a~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (510)
T PLN02913        218 LESIALAKSGIIK---QGRPVVLGGPFLPHIESILRDKASSMNSPVVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVEK  294 (510)
T ss_pred             HHHHHHHHhhhcc---CCCCEEECCCCCHHHHHHHHHHHHHhCCCEEEeccccccceeecccccCCceeEEecccccccc
Confidence            9999999999999   577888875 33443333    23334566655321 1111100 0 0111122210     00


Q ss_pred             ---eEEEEEeeccCCCchhHHHHHHHHHHHHHHHHc-----CCCHHHHHHHhhcCCCCCCeeEEEEeec-------CCEE
Q 017957          206 ---VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-----GVDVEALNSTIEILRTPPHRMQIVHRDI-------QGVT  270 (363)
Q Consensus       206 ---~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~l-----gi~~~~i~~~l~~~~~~~gR~e~~~~~~-------~~~~  270 (363)
                         .......+.++++|.||+.|+++|+  +++..+     +++.+.|+++|++++| |||||++. ..       .+..
T Consensus       295 ~~~~~~~~~~~~l~L~G~hq~~Naa~Al--aa~~~L~~~~~~i~~~~I~~gL~~~~~-pGR~E~i~-~~~~~~~~~~~~~  370 (510)
T PLN02913        295 DDPLFIELSDVNLRMLGSHQLQNAVTAA--CAALCLRDQGWRISDASIRAGLENTNL-LGRSQFLT-SKEAEVLGLPGAT  370 (510)
T ss_pred             ccccccccccccCCCCCHHHHHHHHHHH--HHHHHHHhcCCCCCHHHHHHHHHhCCC-CCceEEee-ccccccccCCCCE
Confidence               0001112468899999999999999  677776     6999999999999997 79999984 11       2457


Q ss_pred             EEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCCCCCCCCCCccchhhhhhhc-c--cCcEEEEEc
Q 017957          271 WVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPL-N--HHRCVITVC  331 (363)
Q Consensus       271 iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l-~--~~~~vi~~G  331 (363)
                      +|+|+ +|||+|++++++.++    .+++++|+|.+.++       +|.++.+.+ .  .+|.++++.
T Consensus       371 vIlDg-AHNp~s~~al~~~L~~~~~~~ki~~V~gml~DK-------d~~~~l~~l~~~~~~d~v~~~~  430 (510)
T PLN02913        371 VLLDG-AHTKESAKALVDTIKTAFPEARLALVVAMASDK-------DHLAFASEFLSGLKPEAVFLTE  430 (510)
T ss_pred             EEEEC-CCCHHHHHHHHHHHHHhcCCCCEEEEEEccCCC-------CHHHHHHHHhcccCCCEEEEEc
Confidence            99997 799999999998873    34677777777553       688888855 4  368888874

>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]

Probab=100.00  E-value=9.5e-40  Score=313.89  Aligned_cols=278  Identities=21%  Similarity=0.235  Sum_probs=205.9

Q ss_pred             eeHHHHHHhhCC---CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc------------cchhhhhhhhhcc---
Q 017957           29 MSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHCI---   90 (363)
Q Consensus        29 l~~~~~~~~~~~---~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn------------ig~p~~~~~~~~~---   90 (363)
                      +.++..+.+.+.   +..++|+|+|||||+||++|+.+||.++|++++.+++            .|.|+++..+...   
T Consensus        27 L~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~  106 (427)
T COG0285          27 LERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFER  106 (427)
T ss_pred             hHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHH
Confidence            667776666542   4678999999999999999999999999999987776            3666665443210   


Q ss_pred             ----cC----C---------------CCCCCCcEEEEEeCc-ccccccCccccccEEEEeCCChhhhccCC-CHHHHHHH
Q 017957           91 ----AL----P---------------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALT  145 (363)
Q Consensus        91 ----~~----~---------------~~~~~~d~~VlE~g~-~~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~  145 (363)
                          ..    .               +.+.++|++|+|+|. |++|++++ +.|+++|||||+.||++++| |+|+|+.+
T Consensus       107 ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGRlDATNV-i~p~vsvIT~I~lDH~~~LG~tie~IA~E  185 (427)
T COG0285         107 VEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRLDATNV-IEPDVSVITSIGLDHTAFLGDTLESIARE  185 (427)
T ss_pred             HHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEeccccccccchhc-cCCceEEEcccChhHHHHhCCcHHHHHHH
Confidence                00    0               235679999999995 68999998 88999999999999999999 99999999


Q ss_pred             HHHhcccCCCCcEEEEeC-CChhHHHHH----hcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCch
Q 017957          146 KCHLFSHMVNTKLGLLPF-GNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR  220 (363)
Q Consensus       146 K~~i~~~~~~~~~~v~n~-dd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~  220 (363)
                      |++|++   ++.++|+.. +.|......    .....++..++.+  +.....  +..+.+...+   ......+|+.|.
T Consensus       186 KAGI~k---~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~---~~~~~~lp~l~~  255 (427)
T COG0285         186 KAGIIK---AGKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPD--FQVLEE--GNGFSFQGGG---GLLDLPLPLLGG  255 (427)
T ss_pred             hhhhcc---CCCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccc--hhhccc--cceEEEecCC---eeeeeccccccc
Confidence            999999   577788876 446444433    2233444444321  111111  2233333212   122358898888


Q ss_pred             h-HHHHHHHHHHHHHHHHcC--CCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----CC
Q 017957          221 H-NYHNAAVAALSVLGLDIG--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GH  293 (363)
Q Consensus       221 h-~~~Nal~A~~~a~~~~lg--i~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~  293 (363)
                      | |+.||++|+  +++..++  ++.+.|++||++..| |||||++.  .+ +.++.|. ||||+|+.++.+.++    .+
T Consensus       256 ~~Q~~NAa~Ai--~al~~l~~~i~~~~i~~gl~~~~w-pGR~e~l~--~~-p~i~lDg-AHNp~aa~~La~~l~~~~~~~  328 (427)
T COG0285         256 HHQIENAALAI--AALEALGKEISEEAIRKGLANVDW-PGRLERLS--EN-PLILLDG-AHNPHAARALAETLKTLFNDR  328 (427)
T ss_pred             hhHHHHHHHHH--HHHHHhcccCCHHHHHHHHHhCcC-CceEEEec--CC-CeEEEEC-CCCHHHHHHHHHHHHHHhccC
Confidence            7 999999999  7888887  589999999999997 99999995  34 5677775 999999999888774    23


Q ss_pred             c-EEEEEcCCCCCCCCCCccchhhhhhhcccC-cEEEEEc
Q 017957          294 K-CVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITVC  331 (363)
Q Consensus       294 ~-~i~IlG~~~~~g~~~~~~~~~~l~~~l~~~-~~vi~~G  331 (363)
                      + +++|+|.+.++       |...+.+.|.+. +.++++.
T Consensus       329 ~~~~~v~g~l~dK-------d~~~~l~~L~~~~~~~~~~~  361 (427)
T COG0285         329 PRLTLVFGMLKDK-------DIAGMLAALLPIVDEIYTTP  361 (427)
T ss_pred             CceEEEEEeecCC-------CHHHHHHHhhccCcEEEEcc
Confidence            3 78999988876       466777777654 5677663

>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=5e-39  Score=315.89  Aligned_cols=281  Identities=25%  Similarity=0.304  Sum_probs=212.3

Q ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh-hhhh-hcccCC-----------CCCCCCcEEEEEeC
Q 017957           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS-EAAF-HCIALP-----------SSKPKFQVAVVEVS  107 (363)
Q Consensus        41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~-~~~~-~~~~~~-----------~~~~~~d~~VlE~g  107 (363)
                      ++.++|+||||||||||++++.++++..|.++++.|..|.-++ .... ..+++|           ..+...++++||++
T Consensus        89 ~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~~vmEvs  168 (475)
T COG0769          89 GKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVS  168 (475)
T ss_pred             cCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCcccccCCCCccHHHHHHHHHHHHHcCCcEEEEEee
Confidence            3579999999999999999999999999999988887665442 1111 012222           13567899999999


Q ss_pred             cccccccCcc-ccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHH---HhcCCccEEEec
Q 017957          108 SYQMEIPNKY-FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEA---IKGHRFNLAWIG  183 (363)
Q Consensus       108 ~~~l~~~~~~-~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~---~~~~~~~~~~~~  183 (363)
                      |+.+..-+.. ...+++++||++.||+|+|+|+|+|+.+|..+|+.++..+.+|+|.||+....+   ......+.+++|
T Consensus       169 sh~l~~~Rv~~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~~~~~~~~~  248 (475)
T COG0769         169 SHGLVQGRVEGVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNALGDYITYG  248 (475)
T ss_pred             hhHHHhCCccCceEEEEeccccCchhhcccCcHHHHHHHHHHHHhhcCCCccEEEccCCchHHHHHHHHHhcCCCEEEeC
Confidence            9887655543 477999999999999999999999999999999866778899999999998443   333444677887


Q ss_pred             cCCCce------eccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCC
Q 017957          184 AFPGVK------IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH  257 (363)
Q Consensus       184 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~g  257 (363)
                      .+.+..      ++....+..+.+...+..   ..+.+|++|.||++|+++|+  +++..+|+|+++|+++|+++++++|
T Consensus       249 ~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~---~~~~~~L~G~fNv~NaLaA~--a~~~~lG~~~e~i~~~l~~~~~v~G  323 (475)
T COG0769         249 CDFKRPDLDYRGIEESSSGSDFVFEPSGGI---GEYELPLPGLFNVYNALAAV--AAALALGVDLEDILAGLETLKPVPG  323 (475)
T ss_pred             CCCchhhhhhccceeeeccceeEEEccCCc---eeEeccccchhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCCC
Confidence            653211      111111122222222222   23589999999999999999  8899999999999999999999999


Q ss_pred             eeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchhhhhhhcc-cCcEEEEEccc
Q 017957          258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITVCAL  333 (363)
Q Consensus       258 R~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~-~~~~vi~~G~~  333 (363)
                      |||.+.  .++..++.| |||||++++++|+.++   .+++++|+|+-++. |.+.+.   .++.... ..|.++++-++
T Consensus       324 RmE~v~--~~~~~v~VD-yAHnPd~le~~L~~~~~~~~g~li~VfG~gGDr-D~~kr~---~mg~ia~~~ad~vivt~dn  396 (475)
T COG0769         324 RMELVN--IGGKLVIVD-YAHNPDGLEKALRAVRLHAAGRLIVVFGCGGDR-DKSKRP---DMGAIAEQLADIVIVTSDN  396 (475)
T ss_pred             cceEec--CCCCeEEEE-eccChHHHHHHHHHHHhhcCCcEEEEECccCCC-Cccccc---chHHHHHhcCCcEEEcCCC
Confidence            999996  447788888 5999999999999885   46899999988887 666433   3444433 35677777543

>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional

Probab=100.00  E-value=4e-39  Score=315.48  Aligned_cols=276  Identities=18%  Similarity=0.153  Sum_probs=190.8

Q ss_pred             eeeHHHHHHhhCC---CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc------------cchhhhhhhhhc---
Q 017957           28 VMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHC---   89 (363)
Q Consensus        28 ~l~~~~~~~~~~~---~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn------------ig~p~~~~~~~~---   89 (363)
                      -+.++..+.+.++   ++.++||||||||||||+.||+++|+++|++++++++            .|.+++...+..   
T Consensus        31 ~l~~~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~~  110 (416)
T PRK10846         31 GLERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASFA  110 (416)
T ss_pred             ChHHHHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCceEECCCCCCCcceEEEECCEECCHHHHHHHHH
Confidence            3555555554432   3567999999999999999999999999999988775            244443221110   


Q ss_pred             ----------cc----------CCCCCCCCcEEEEEeC-cccccccCccccccEEEEeCCChhhhccCC-CHHHHHHHHH
Q 017957           90 ----------IA----------LPSSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKC  147 (363)
Q Consensus        90 ----------~~----------~~~~~~~~d~~VlE~g-~~~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~K~  147 (363)
                                ++          ....+.++|++|+|+| +|++|.++. ++|+++|||||++||+++|| |+|+|+++|+
T Consensus       111 ~~~~~~~~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglggrld~tn~-i~p~vaviTnI~~DHld~lG~t~e~ia~~Ka  189 (416)
T PRK10846        111 EIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNI-VDADVAVVTSIALDHTDWLGPDRESIGREKA  189 (416)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCCchhhhc-cCCCEEEECCccHHHHHHhcCCHHHHHHHHH
Confidence                      00          0023567899999999 679999887 79999999999999999999 8999999999


Q ss_pred             HhcccCCCCcEEEEeCCC-hh-HHHHHhcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHH
Q 017957          148 HLFSHMVNTKLGLLPFGN-QH-LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHN  225 (363)
Q Consensus       148 ~i~~~~~~~~~~v~n~dd-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~N  225 (363)
                      +|++.   ++.+|+|.+| +. ....+.....++..++..  +.+....  ..+.+.....  .  ...++++ .||++|
T Consensus       190 ~Iik~---~~~~V~~~~d~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~--~--~~~~~l~-~~~~~N  257 (416)
T PRK10846        190 GIFRA---EKPAVVGEPDMPSTIADVAQEKGALLQRRGVD--WNYSVTD--HDWAFSDGDG--T--LENLPLP-NVPLPN  257 (416)
T ss_pred             hhhcC---CCeEEECCccHhHHHHHHHHHhCCcEEEecce--eeeeccC--ceEEEecCcc--c--cccCCcc-chHHHH
Confidence            99983   6788998766 33 223344344444443321  1111000  1122211110  1  1235565 479999


Q ss_pred             HHHHHHHHHHHH--cCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcc---c-CCcEEEEE
Q 017957          226 AAVAALSVLGLD--IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---K-GHKCVILL  299 (363)
Q Consensus       226 al~A~~~a~~~~--lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~---~-~~~~i~Il  299 (363)
                      +++|+  +++..  ++++.++|+++|++++ +|||||++.  . ...+|+|+ ||||+|++++++.+   . ++|+++|+
T Consensus       258 ~~~Ai--a~~~~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~-~~~iI~D~-AHNp~a~~~l~~~L~~~~~~~~ii~Vf  330 (416)
T PRK10846        258 AATAL--AALRASGLEVSEQAIRDGIASAI-LPGRFQIVS--E-SPRVILDV-AHNPHAAEYLTGRLKALPKNGRVLAVI  330 (416)
T ss_pred             HHHHH--HHHHHcCCCCCHHHHHHHHHhCC-CCceEEEEc--C-CCcEEEEC-CCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            99999  56644  5799999999999999 699999995  2 33588886 99999999985554   3 35789999


Q ss_pred             cCCCCCCCCCCccchhhhhhhcc-cCcEEEEE
Q 017957          300 GGQAKVLNGQESNGFEKLIEPLN-HHRCVITV  330 (363)
Q Consensus       300 G~~~~~g~~~~~~~~~~l~~~l~-~~~~vi~~  330 (363)
                      |.++++       ++..+...+. ..+.++++
T Consensus       331 g~~gdk-------d~~~~l~~L~~~~d~viv~  355 (416)
T PRK10846        331 GMLHDK-------DIAGTLACLKSVVDDWYCA  355 (416)
T ss_pred             EeeCCC-------CHHHHHHHHhhhCCEEEEE
Confidence            977654       3555555554 46666554

>PLN02881 tetrahydrofolylpolyglutamate synthase

Probab=100.00  E-value=1.4e-36  Score=298.83  Aligned_cols=258  Identities=21%  Similarity=0.247  Sum_probs=190.1

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc------------cchhhhhhhhh--------cc--cC------C
Q 017957           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFH--------CI--AL------P   93 (363)
Q Consensus        42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn------------ig~p~~~~~~~--------~~--~~------~   93 (363)
                      +.++|+||||||||||++|+++||++.|++++++++            .|.|++...+.        ++  ..      +
T Consensus        60 ~l~vIhVaGTnGKGSt~a~l~siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~f~~v~~~l~~~~~~~~~~p  139 (530)
T PLN02881         60 RLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCWDRLKEKTTEDLPMP  139 (530)
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHHHHHHHHHHHHhcccccCCC
Confidence            567999999999999999999999999999988877            35666653221        11  00      1


Q ss_pred             -------------CCCCCCcEEEEEeC-cccccccCccccccEEEEeCCChhhhccCC-CHHHHHHHHHHhcccCCCCcE
Q 017957           94 -------------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKL  158 (363)
Q Consensus        94 -------------~~~~~~d~~VlE~g-~~~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~~  158 (363)
                                   +.+.++|++|+|+| .|++|.++.+.+|+++|||||+.||+++|| |+|+|+.+|++|++   ++.+
T Consensus       140 t~Fe~lTlla~~~F~~~~vD~aVlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tle~IA~~KagI~k---~g~p  216 (530)
T PLN02881        140 AYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTLGKIAGEKAGIFK---PGVP  216 (530)
T ss_pred             cHHHHHHHHHHHHHHhCCCCEEEEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCHHHHHHHHHHHHh---cCCC
Confidence                         12567899999999 578999987558999999999999999999 99999999999998   5777


Q ss_pred             EEEeCCChhHHHHH----hcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHH
Q 017957          159 GLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (363)
Q Consensus       159 ~v~n~dd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~  234 (363)
                      +|...+.+....+.    .+...++..++..       +    .+.         +....+++.|.||..|+++|+  ++
T Consensus       217 ~vt~~q~~ea~~vl~~~A~e~~a~l~~v~~~-------~----~~~---------~~~~~l~L~G~~Q~~NaalAl--a~  274 (530)
T PLN02881        217 AFTVPQPDEAMRVLEERASELGVPLQVVEPL-------D----SYG---------LSGLKLGLAGEHQYLNAGLAV--AL  274 (530)
T ss_pred             EEEeCCChHHHHHHHHHHHHhCCcEEEeccc-------c----cce---------ecccCCCCCChhHHHhHHHHH--HH
Confidence            77766666654443    2233344333211       0    001         112368899999999999999  55


Q ss_pred             HHHc---------------CCCHHHHHHHhhcCCCCCCeeEEEEe------ecCCEEEEEcCCCCCHHHHHHHHhccc--
Q 017957          235 GLDI---------------GVDVEALNSTIEILRTPPHRMQIVHR------DIQGVTWVDDSKATNLEATCTGLMDLK--  291 (363)
Q Consensus       235 ~~~l---------------gi~~~~i~~~l~~~~~~~gR~e~~~~------~~~~~~iidD~~a~np~s~~~al~~~~--  291 (363)
                      +..+               ...++.+++||+++.| |||||++..      ..+++.+|.|. ||||+|++++.++|.  
T Consensus       275 ~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~~w-pGR~e~v~~~~~~~~~~~~~~~~LDG-AHNp~s~~~l~~wf~~~  352 (530)
T PLN02881        275 CSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTASL-QGRAQVVPDSYINSEDSGDLVFYLDG-AHSPESMEACARWFSSA  352 (530)
T ss_pred             HHHHHhhccccccccccccCCCHHHHHHHHHhCCC-CceEEEeccccccccCCCCCeEEEEC-CCCHHHHHHHHHHHHHH
Confidence            5543               2345689999999997 999999951      01456789896 999999999888762  


Q ss_pred             ---C-------------------------CcEEEEEcCCCCCCCCCCccchhhhhhhc----c----cCcEEEEEccc
Q 017957          292 ---G-------------------------HKCVILLGGQAKVLNGQESNGFEKLIEPL----N----HHRCVITVCAL  333 (363)
Q Consensus       292 ---~-------------------------~~~i~IlG~~~~~g~~~~~~~~~~l~~~l----~----~~~~vi~~G~~  333 (363)
                         .                         +++++|+|.|.++       +...+.+.|    .    ..|.++++-..
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF~~~~dk-------D~~~lL~~L~~~~~~~~~~f~~aiF~~n~  423 (530)
T PLN02881        353 IKGDEQSPGSGYGPHGGGGKSEDTESNKISEQILLFNCMSVR-------DPQLLLPPLANTCASNGVPFKKALFVPNI  423 (530)
T ss_pred             hcccccCCcccccccccccccccccccCCCCEEEEEcCCCCC-------CHHHHHHHHHHHHHhcCCCCCeEEEcCCc
Confidence               1                         2689999998875       344555544    2    36788777654

>PRK14016 cyanophycin synthetase; Provisional

Probab=100.00  E-value=8.3e-34  Score=293.46  Aligned_cols=250  Identities=18%  Similarity=0.197  Sum_probs=178.2

Q ss_pred             ccccCCCc-HHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhh
Q 017957            8 LLEFQLKA-TGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA   86 (363)
Q Consensus         8 ~~~~~~~~-p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~   86 (363)
                      +|+++..+ |...++++.+.+++..+.....  +.+.|+|+||||||||||++||+++|+..|.++++.++.|..+....
T Consensus       446 sPgi~~~~~p~~g~~r~v~~~Iid~L~~~~~--~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~~  523 (727)
T PRK14016        446 APGLRMHLAPSEGKPRNVGEAIVDMLFPEGD--DGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRL  523 (727)
T ss_pred             CcchhhccCCCCCcchhHHHHHHHHhcccCC--CCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCEE
Confidence            55665543 6666666666667666432222  13578999999999999999999999999999988888765442111


Q ss_pred             hh--------cccCCCCCCCCcEEEEEeCcccccc-cCccccccEEEEeCCChhhhccCC--CHHHHHHHHHHhcccCCC
Q 017957           87 FH--------CIALPSSKPKFQVAVVEVSSYQMEI-PNKYFCPTVSVVLNLTPDHLERHK--TMKNYALTKCHLFSHMVN  155 (363)
Q Consensus        87 ~~--------~~~~~~~~~~~d~~VlE~g~~~l~~-~~~~~~p~i~viTnI~~dHl~~~g--t~e~~~~~K~~i~~~~~~  155 (363)
                      ..        ....-...++.|++|+|+|++++.. ...+.+|+++|||||++||+++++  |+|+|+.+|+.+++.+++
T Consensus       524 i~~gd~t~p~s~~~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~~  603 (727)
T PRK14016        524 IDKGDCTGPKSARRVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVKP  603 (727)
T ss_pred             eccccccCHHHHHHHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhCC
Confidence            00        0000012456799999999987743 233468999999999999999885  999999999999998888


Q ss_pred             CcEEEEeCCChhHHHHHhcCCccEEEeccCCCcee-----ccccc-----cceEEEecCCeEE---EEEeeccCCCc--h
Q 017957          156 TKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI-----DTEAK-----TASFEVPAVGVVS---QLQLHNMKVMG--R  220 (363)
Q Consensus       156 ~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~---~~~~~~l~l~G--~  220 (363)
                      ++.+|+|.||+.+..+...++.++++|+.+++..+     .....     ...+.+..++...   .+..+.+.++|  .
T Consensus       604 ~g~aVlNaDD~~~~~~~~~~~~~vi~fs~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~i~l~~~G~~~  683 (727)
T PRK14016        604 DGYAVLNADDPMVAAMAERCKGKVIFFSMDPDNPVIAEHRAQGGRAVYVEGDYIVLAEGGWEIRIISLADIPLTLGGKAG  683 (727)
T ss_pred             CCeEEEcCCCHHHHHHHHhCCCcEEEEeCCCCChHHHHHHHhCCceEEEeCCEEEEEeCCcceeeccccccceecCCcch
Confidence            99999999999998887766677888886532110     00100     0111111111111   11123444477  7


Q ss_pred             hHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----CCCeeEE
Q 017957          221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT----PPHRMQI  261 (363)
Q Consensus       221 h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~----~~gR~e~  261 (363)
                      ||++|+++|+  |+++.+|++++.|+++|++|++    .||||+.
T Consensus       684 hnv~NalAAi--Aaa~~lGi~~~~I~~~L~sF~~~~~~~pGR~n~  726 (727)
T PRK14016        684 FNIENALAAI--AAAWALGIDIELIRAGLRTFVSDAAQAPGRFNL  726 (727)
T ss_pred             hhHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCccCCCccccc
Confidence            9999999999  8999999999999999999996    8999985

>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment

Probab=100.00  E-value=1.7e-32  Score=240.50  Aligned_cols=176  Identities=25%  Similarity=0.350  Sum_probs=134.2

Q ss_pred             EeCCCChHHHHHHHHHHHHhcCCCeEeecc----cchhhhhhhhhcccCCCCCCCCcEEEEEeCcccccc--cCcccccc
Q 017957           48 VTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI--PNKYFCPT  121 (363)
Q Consensus        48 VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn----ig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~--~~~~~~p~  121 (363)
                      ||||||||||++||+++|+.+|.++++.||    +|.+.......       +.+.|++|+|+|++++..  ....++|+
T Consensus         1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~V~E~~~~~~~~~~l~~~~~p~   73 (188)
T PF08245_consen    1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNTNNQIGLPLLLLNAR-------EGGADIAVLEVSEGGLGDERLSFLLKPD   73 (188)
T ss_dssp             EESSSSHHHHHHHHHHHHHHTTEEEEEESSCHHHHHHHHHHHHHH-------HTTSSEEEEEESSSCCCTSTTSGGSBES
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHhhhc-------ccccceeeeeccCCccccceeeeeeehh
Confidence            899999999999999999999999998888    56555544432       357899999999884443  33337999


Q ss_pred             EEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCccEEEeccCCCceec-----ccccc
Q 017957          122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TEAKT  196 (363)
Q Consensus       122 i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  196 (363)
                      ++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||.+.........++++|+.+.+.++.     ....+
T Consensus        74 i~viTni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n~dd~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~  153 (188)
T PF08245_consen   74 IAVITNIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLNADDPELAEIAANSKCKVITFGLDNSADIRASNISYSEEG  153 (188)
T ss_dssp             EEEE----SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEETTSHHHHHHHHHHTTTEEEEESSSSSEEEEEEEEEETTE
T ss_pred             eeeeceecccccccCCCHHHHHHHHHhhhhhcccceEEEecCCCHHHHHHHHhcCCcEEEeccCcccceeeeeEEEecCC
Confidence            9999999999999999999999999999999998999999999998877777677779999986544221     11122


Q ss_pred             ceEEEe-cCCeEEEEEeeccCCCchhHHHHHHHHHHHHHH
Q 017957          197 ASFEVP-AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG  235 (363)
Q Consensus       197 ~~~~~~-~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~  235 (363)
                      ..+.+. ..+...+   +.++++|.||++|+++|+  ++|
T Consensus       154 ~~~~i~~~~~~~~~---~~~~l~G~hn~~NalaA~--a~a  188 (188)
T PF08245_consen  154 GRFRIISYNGEEFE---IELPLPGKHNVENALAAI--AAA  188 (188)
T ss_dssp             EEEEEEEETTEEEE---EEESSSSHHHHHHHHHHH--HHH
T ss_pred             cEEEEEEecCceEE---EEecCCCHHHHHHHHHHH--HhC
Confidence            333222 2333333   589999999999999999  554

The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....

>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]

Probab=99.97  E-value=6.6e-31  Score=249.31  Aligned_cols=248  Identities=23%  Similarity=0.263  Sum_probs=180.8

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc------------cchhhhhhhhhcc----------------cCC
Q 017957           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHCI----------------ALP   93 (363)
Q Consensus        42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn------------ig~p~~~~~~~~~----------------~~~   93 (363)
                      +..+|||+|||||+||++++.+||+++|++++.+++            .|.|++...+..+                .++
T Consensus        71 ~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~p  150 (496)
T KOG2525|consen   71 SLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSMP  150 (496)
T ss_pred             heeEEEEecCCCCcchHHHHHHHHHhcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCCC
Confidence            578999999999999999999999999999977665            4777765543211                001


Q ss_pred             -------------CCCCCCcEEEEEeCc-ccccccCccccccEEEEeCCChhhhccCC-CHHHHHHHHHHhcccCCCCcE
Q 017957           94 -------------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKL  158 (363)
Q Consensus        94 -------------~~~~~~d~~VlE~g~-~~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~~  158 (363)
                                   +...++|++|+|+|. |++|.++++-+|-++.||+||.||++++| |+++|+.+|++||+   .+.+
T Consensus       151 ~yF~fLT~lAF~~F~~enVdvaViEvGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK---~gvp  227 (496)
T KOG2525|consen  151 TYFEFLTLLAFHVFVKENVDVAVIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFK---EGVP  227 (496)
T ss_pred             chhhhhHhhhheeeeecCCcEEEEEeccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhccccc---cCCc
Confidence                         246789999999995 68999999778999999999999999999 99999999999999   4666


Q ss_pred             EEEeCCChhHHHHHhcC-Cc-cEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHH
Q 017957          159 GLLPFGNQHLNEAIKGH-RF-NLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL  236 (363)
Q Consensus       159 ~v~n~dd~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~  236 (363)
                      ++.-...+......... .. .+..+-..                  .....++....+.+.|.||..|+..|+  .++.
T Consensus       228 aft~~q~~e~~nvL~~ra~e~~~~L~~v~------------------p~~~~~ls~~~lgl~g~hq~~na~lA~--~L~~  287 (496)
T KOG2525|consen  228 AFTVPQPPEALNVLKERASELGVPLFVVP------------------PLEAYELSGVNLGLIGTHQWSNASLAV--QLAS  287 (496)
T ss_pred             eEEcCCcHHHHHHHHHHHHhcCCCceecC------------------CchhhhhcCCcccccccchhhhhHHHH--HHHH
Confidence            66655666665554321 11 11000000                  000001112347789999999999998  4443


Q ss_pred             Hc-----------------C--CCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc------
Q 017957          237 DI-----------------G--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK------  291 (363)
Q Consensus       237 ~l-----------------g--i~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~------  291 (363)
                      ..                 +  +++. ...||.++.| |||.|++. ..++++++.|. |||++||+++.+.++      
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~l~GL~~~~w-PGR~qil~-~~~~~~~llDG-AHt~eSaea~~~w~~~~~~~~  363 (496)
T KOG2525|consen  288 EWLIQNGRVAEGVLDALQTSGLIPPA-FLSGLASTDW-PGRLQILE-YGRGVTWLLDG-AHTKESAEACAKWFRKAVRGL  363 (496)
T ss_pred             HHHHhcCcccccCCCccccccCCCHH-HhcchhhccC-CCceEEEe-cCCCcEEEecC-CCCHHHHHHHHHHHHHHhccC
Confidence            21                 2  4444 4569999998 99999996 34778899996 999999999988773      


Q ss_pred             -CCc-EEEEEcCCCCCCCCCCccchhhhhhhccc
Q 017957          292 -GHK-CVILLGGQAKVLNGQESNGFEKLIEPLNH  323 (363)
Q Consensus       292 -~~~-~i~IlG~~~~~g~~~~~~~~~~l~~~l~~  323 (363)
                       +.+ +|+++..+.+..       ...+...+++
T Consensus       364 ~~~~~~illfn~t~~~d-------~~~Ll~~L~~  390 (496)
T KOG2525|consen  364 KKLTSLILLFNCTSDRD-------PPLLLPLLKP  390 (496)
T ss_pred             CCccceEEEEEecCCcc-------hHhHhHHhcc
Confidence             222 588999998864       4456666655

>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family

Probab=99.33  E-value=2.6e-12  Score=98.91  Aligned_cols=77  Identities=22%  Similarity=0.231  Sum_probs=61.0

Q ss_pred             CCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcc----cCCcEEEEEcCCCCCCCCCCccchhhhhhhccc-CcEEEE
Q 017957          255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVIT  329 (363)
Q Consensus       255 ~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~----~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~~-~~~vi~  329 (363)
                      +|||||++. ..+++++|+| |||||+|++++++.+    +++++++|+|.|.++|... ...+..+++.++. .+.+++
T Consensus         1 vpgR~e~v~-~~~~~~vi~D-~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~-~~~~~~~~~~~~~~~d~vi~   77 (91)
T PF02875_consen    1 VPGRMEVVR-EPNGPTVIDD-YAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKD-KDFHEEIGELAAQLADVVIL   77 (91)
T ss_dssp             ETTSSEEEE-EETTEEEEEE-T--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSH-HHCHHHHHHHHTTCSSEEEE
T ss_pred             CCCCcEEEe-eCCCcEEEEE-CCCCHHHHHHHHHHHHHhccCCcEEEEEcccccccccc-HHHHHHHHHHHHhcCCEEEE
Confidence            489999997 4689999999 799999999999988    3578999999999866544 2346788888876 778999


Q ss_pred             Ecccc
Q 017957          330 VCALL  334 (363)
Q Consensus       330 ~G~~~  334 (363)
                      +|+..
T Consensus        78 ~~~~~   82 (91)
T PF02875_consen   78 TGDNP   82 (91)
T ss_dssp             ETSBT
T ss_pred             cCCCC
Confidence            98874

; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.46  E-value=0.025  Score=52.30  Aligned_cols=117  Identities=17%  Similarity=0.242  Sum_probs=74.1

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEe----------eccc-chhhhhhhhh---c-----ccCC-------
Q 017957           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV----------GGNL-GNPLSEAAFH---C-----IALP-------   93 (363)
Q Consensus        42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~----------~gni-g~p~~~~~~~---~-----~~~~-------   93 (363)
                      +.++|||||+  .||||...-|..-|.+.|.+++.          +|++ |.-+-...+.   .     +.+.       
T Consensus        50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS  129 (323)
T COG1703          50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS  129 (323)
T ss_pred             CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence            5679999997  67999999999999999998864          2331 2111111000   0     0000       


Q ss_pred             ---------CCCCCCcEEEEEeC-cccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017957           94 ---------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (363)
Q Consensus        94 ---------~~~~~~d~~VlE~g-~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~  163 (363)
                               .....+|+.++|.. .||-+..-. --.|..+++.+..       .=+++...|+++++-   .+..|+|.
T Consensus       130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~-~~aDt~~~v~~pg-------~GD~~Q~iK~GimEi---aDi~vINK  198 (323)
T COG1703         130 RATREAIKLLDAAGYDVIIVETVGVGQSEVDIA-NMADTFLVVMIPG-------AGDDLQGIKAGIMEI---ADIIVINK  198 (323)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCcchhHHh-hhcceEEEEecCC-------CCcHHHHHHhhhhhh---hheeeEec
Confidence                     02456899999987 477664322 2346666655532       224556778888884   78999999


Q ss_pred             CChhHH
Q 017957          164 GNQHLN  169 (363)
Q Consensus       164 dd~~~~  169 (363)
                      .|..-.
T Consensus       199 aD~~~A  204 (323)
T COG1703         199 ADRKGA  204 (323)
T ss_pred             cChhhH
Confidence            885544

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=94.25  E-value=0.45  Score=45.34  Aligned_cols=114  Identities=17%  Similarity=0.115  Sum_probs=67.2

Q ss_pred             CCCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeecc-cchhhhhh-------hhhcc--------c---CC------
Q 017957           41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN-LGNPLSEA-------AFHCI--------A---LP------   93 (363)
Q Consensus        41 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~gn-ig~p~~~~-------~~~~~--------~---~~------   93 (363)
                      .+..+|+|||+  .||||++..+...|+..|.+++..+. ...+.+..       ....+        .   ..      
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~  133 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV  133 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence            35669999995  58999999999999999988864433 12221100       00000        0   00      


Q ss_pred             ----------CCCCCCcEEEEEeCc-ccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEe
Q 017957           94 ----------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP  162 (363)
Q Consensus        94 ----------~~~~~~d~~VlE~g~-~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n  162 (363)
                                ....+.|+.++|... ++-+ ....-..|+.++..-       -++-+++...|.++++.   .+.+|+|
T Consensus       134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~-~~i~~~aD~vlvv~~-------p~~gd~iq~~k~gi~E~---aDIiVVN  202 (332)
T PRK09435        134 ARKTRETMLLCEAAGYDVILVETVGVGQSE-TAVAGMVDFFLLLQL-------PGAGDELQGIKKGIMEL---ADLIVIN  202 (332)
T ss_pred             HHHHHHHHHHHhccCCCEEEEECCCCccch-hHHHHhCCEEEEEec-------CCchHHHHHHHhhhhhh---hheEEee
Confidence                      013457889999874 3322 222234566555511       23555666667767663   4688999


Q ss_pred             CCC
Q 017957          163 FGN  165 (363)
Q Consensus       163 ~dd  165 (363)
                      .-|
T Consensus       203 KaD  205 (332)
T PRK09435        203 KAD  205 (332)
T ss_pred             hhc
Confidence            877

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=92.70  E-value=0.11  Score=45.41  Aligned_cols=27  Identities=37%  Similarity=0.664  Sum_probs=24.6

Q ss_pred             EEEEeC--CCChHHHHHHHHHHHHhcCCC
Q 017957           45 ILAVTG--TNGKSTVVTFVGQMLNHLGIE   71 (363)
Q Consensus        45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~   71 (363)
                      +|+|+|  ..||||++..|...|.+.|..
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~   29 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence            689999  789999999999999988865

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=92.63  E-value=0.78  Score=34.12  Aligned_cols=29  Identities=28%  Similarity=0.447  Sum_probs=24.1

Q ss_pred             EEEeCC--CChHHHHHHHHHHHHhcCCCeEe
Q 017957           46 LAVTGT--NGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        46 I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      |.++|.  .||||++..++..|++.|.++..
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~   32 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLL   32 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            566655  69999999999999999888743

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK15453 phosphoribulokinase; Provisional

Probab=91.87  E-value=0.29  Score=45.30  Aligned_cols=29  Identities=28%  Similarity=0.384  Sum_probs=24.4

Q ss_pred             CCCcEEEEeCC--CChHHHHHHHHHHHHhcC
Q 017957           41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLG   69 (363)
Q Consensus        41 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g   69 (363)
                      ++.++|+|||+  .||||++..++++|...+
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~   33 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRREN   33 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence            46789999996  579999999999987554

>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC

Probab=91.16  E-value=0.28  Score=44.25  Aligned_cols=33  Identities=18%  Similarity=0.406  Sum_probs=29.2

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc
Q 017957           45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN   77 (363)
Q Consensus        45 vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn   77 (363)
                      +|+|+|.-||||+..-|+.-|+..|+++.+.++
T Consensus         1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTT   33 (232)
T TIGR03172         1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTT   33 (232)
T ss_pred             CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECC
Confidence            589999999999999999999999998865443

This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=89.88  E-value=0.48  Score=40.17  Aligned_cols=38  Identities=24%  Similarity=0.336  Sum_probs=31.4

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeecccch
Q 017957           43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGNLGN   80 (363)
Q Consensus        43 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~gnig~   80 (363)
                      .++++|+|.  .||||...=|-..|++.|+++++.-.-+.
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh   41 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH   41 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence            479999995  69999999999999999999966544333

>PRK06696 uridine kinase; Validated

Probab=89.85  E-value=0.81  Score=40.89  Aligned_cols=34  Identities=18%  Similarity=0.245  Sum_probs=28.4

Q ss_pred             CCCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEe
Q 017957           41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        41 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      ....+|+|+|  ..||||.+..|...|...|..+..
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~   55 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIR   55 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            3567999999  789999999999999988765543

>PRK07667 uridine kinase; Provisional

Probab=89.14  E-value=1.1  Score=39.00  Aligned_cols=31  Identities=29%  Similarity=0.419  Sum_probs=26.7

Q ss_pred             CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017957           42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA   72 (363)
Q Consensus        42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~   72 (363)
                      ...+|||+|  ..||||++..|...|...|.++
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~   48 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPF   48 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcE
Confidence            346999999  6899999999999999887665

>PHA02519 plasmid partition protein SopA; Reviewed

Probab=89.05  E-value=0.62  Score=45.44  Aligned_cols=34  Identities=24%  Similarity=0.198  Sum_probs=29.9

Q ss_pred             CCcEEEEe---CCCChHHHHHHHHHHHHhcCCCeEee
Q 017957           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        42 ~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      +.++|+|+   |-.|||||+.-|++.|...|+++.+.
T Consensus       105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlI  141 (387)
T PHA02519        105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLI  141 (387)
T ss_pred             CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence            46799999   88899999999999999999998544

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=88.80  E-value=0.65  Score=45.60  Aligned_cols=34  Identities=29%  Similarity=0.473  Sum_probs=29.7

Q ss_pred             CCcEEEEe---CCCChHHHHHHHHHHHHhcCCCeEee
Q 017957           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        42 ~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      +.++|+|+   |-.|||||+.-|++.|...|+++.+.
T Consensus       120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI  156 (405)
T PRK13869        120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV  156 (405)
T ss_pred             CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence            34789999   88899999999999999999998643

>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]

Probab=88.79  E-value=0.66  Score=41.48  Aligned_cols=32  Identities=34%  Similarity=0.433  Sum_probs=28.2

Q ss_pred             CcEEEEeCCC---ChHHHHHHHHHHHHhcCCCeEe
Q 017957           43 IKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        43 ~~vI~VTGTn---GKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      .+.+-||||.   |||.+++.|.+.|+++|+++..
T Consensus         2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~   36 (223)
T COG0132           2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAG   36 (223)
T ss_pred             CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEE
Confidence            3688999986   9999999999999999998753

>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed

Probab=88.69  E-value=0.66  Score=44.07  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=30.2

Q ss_pred             CCcEEEE----eCCCChHHHHHHHHHHHHhcCCCeEee
Q 017957           42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        42 ~~~vI~V----TGTnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      +.|+|.|    .|-.|||+++.+|...|++.|.+++..
T Consensus        48 ~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~il   85 (325)
T PRK00652         48 PVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVV   85 (325)
T ss_pred             CCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence            4678988    899999999999999999999998654

>PRK13705 plasmid-partitioning protein SopA; Provisional

Probab=88.51  E-value=0.66  Score=45.30  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=30.1

Q ss_pred             CCcEEEEe---CCCChHHHHHHHHHHHHhcCCCeEee
Q 017957           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        42 ~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      +.++|+|+   |-.|||||+.-|++.|...|+++.+.
T Consensus       105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI  141 (388)
T PRK13705        105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV  141 (388)
T ss_pred             CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence            45799999   89999999999999999999998554

>PHA02518 ParA-like protein; Provisional

Probab=88.40  E-value=0.75  Score=40.27  Aligned_cols=30  Identities=37%  Similarity=0.496  Sum_probs=24.7

Q ss_pred             EEEEe---CCCChHHHHHHHHHHHHhcCCCeEe
Q 017957           45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        45 vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      +|+|+   |-.||||++..|+..|...|.++.+
T Consensus         2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vll   34 (211)
T PHA02518          2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLL   34 (211)
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            45554   6778999999999999999988854

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=88.32  E-value=1.1  Score=39.24  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=27.7

Q ss_pred             CCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEe
Q 017957           42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        42 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      +.++|+||++   .||||++..|+..|...|.++.+
T Consensus        16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVll   51 (204)
T TIGR01007        16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLL   51 (204)
T ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            5789999954   47999999999999999987743

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG

Probab=88.30  E-value=1.1  Score=41.22  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=29.2

Q ss_pred             CCCcEEEEe---CCCChHHHHHHHHHHHHhcCCCeEe
Q 017957           41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        41 ~~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      +..++|+||   |.-||||++..|+..|...|.++.+
T Consensus       101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~Vll  137 (274)
T TIGR03029       101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLL  137 (274)
T ss_pred             CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            467899999   6779999999999999999988743

The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=87.76  E-value=0.87  Score=40.27  Aligned_cols=30  Identities=27%  Similarity=0.358  Sum_probs=24.9

Q ss_pred             EEEEe--CCCChHHHHHHHHHHHHhcCCCeEe
Q 017957           45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        45 vI~VT--GTnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      +|+|+  |-.|||||+.-|++.|.+.|+++..
T Consensus         2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLl   33 (212)
T cd02117           2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQ   33 (212)
T ss_pred             EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEE
Confidence            45555  4779999999999999999998753

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=87.68  E-value=3.3  Score=34.51  Aligned_cols=107  Identities=18%  Similarity=0.177  Sum_probs=61.5

Q ss_pred             EEEeC--CCChHHHHHHHHHHHHhcCCCeEeecc-cchhhh------hh-hhhc------c---cCC-------------
Q 017957           46 LAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN-LGNPLS------EA-AFHC------I---ALP-------------   93 (363)
Q Consensus        46 I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~gn-ig~p~~------~~-~~~~------~---~~~-------------   93 (363)
                      |++.|  -.||||+...+...+...|.++..... .+.+..      .. .++.      +   ..+             
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATP   81 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhHH
Confidence            55665  468999999999999999887754221 111110      00 0000      0   000             


Q ss_pred             -----CCCCCCcEEEEEeCcccccc-cCcccccc-EEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCC
Q 017957           94 -----SSKPKFQVAVVEVSSYQMEI-PNKYFCPT-VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG  164 (363)
Q Consensus        94 -----~~~~~~d~~VlE~g~~~l~~-~~~~~~p~-i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~d  164 (363)
                           ....++|+.++++ .|.... .......| +.|+|+-.        -.+.|+--|..+++   ..+.+++|.-
T Consensus        82 ~~~~~~~~~~~D~iiIDt-aG~~~~~~~~~~~Ad~~ivv~tpe--------~~D~y~~~k~~~~~---~~~~~~~~k~  147 (148)
T cd03114          82 EVIRVLDAAGFDVIIVET-VGVGQSEVDIASMADTTVVVMAPG--------AGDDIQAIKAGIME---IADIVVVNKA  147 (148)
T ss_pred             HHHHHHHhcCCCEEEEEC-CccChhhhhHHHhCCEEEEEECCC--------chhHHHHhhhhHhh---hcCEEEEeCC
Confidence                 0123678999999 442111 11112233 56777655        24788999998888   4788888853

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]

Probab=87.62  E-value=0.73  Score=40.96  Aligned_cols=37  Identities=32%  Similarity=0.540  Sum_probs=29.8

Q ss_pred             cEEEEe---CCCChHHHHHHHHHHHHhcCCCeEeec-ccch
Q 017957           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGG-NLGN   80 (363)
Q Consensus        44 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~g-nig~   80 (363)
                      ++|.||   |-.|||||++-|...|...|.++.+.- .+|.
T Consensus         3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGL   43 (272)
T COG2894           3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGL   43 (272)
T ss_pred             eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCc
Confidence            578887   678999999999999999999986543 3443

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=87.51  E-value=0.89  Score=40.91  Aligned_cols=32  Identities=22%  Similarity=0.380  Sum_probs=28.3

Q ss_pred             cEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017957           44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      ++|+|+|  -.||||++.-|...|+..|+++++.
T Consensus         2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi   35 (229)
T PRK14494          2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATA   35 (229)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence            6899999  7899999998999999999988765

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=87.12  E-value=0.96  Score=37.38  Aligned_cols=32  Identities=25%  Similarity=0.344  Sum_probs=25.2

Q ss_pred             cEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017957           44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      |+|+|.|  -.||||.+..|-.-|.++|++++..
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i   34 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI   34 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence            5788888  5699999999999999999988643

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=87.10  E-value=0.9  Score=39.18  Aligned_cols=29  Identities=24%  Similarity=0.434  Sum_probs=24.2

Q ss_pred             EEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017957           45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAF   73 (363)
Q Consensus        45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~   73 (363)
                      +|+|+|  ..||||.+..|...|...|.++.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~   31 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPV   31 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence            478888  57999999999999998776553

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=86.88  E-value=0.4  Score=47.99  Aligned_cols=122  Identities=23%  Similarity=0.221  Sum_probs=73.4

Q ss_pred             CcHHHHHHHhcC-CceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCe-Eeecccchhhhhhhhhccc
Q 017957           14 KATGLACLLQSG-KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-FVGGNLGNPLSEAAFHCIA   91 (363)
Q Consensus        14 ~~p~l~~a~~~~-~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~-~~~gnig~p~~~~~~~~~~   91 (363)
                      .+-....|.++| +.++.+.+.  .......++|.|+||+||++++++....+.....++ +..|+.|..-....+....
T Consensus        36 g~~~~~~a~~~Gavav~~~~~~--~~~~~~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~  113 (475)
T COG0769          36 GHDFIAGAIAPGAVAVVVEKDI--KLAEAGVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQIL  113 (475)
T ss_pred             cccchHhHhhCCCEEEEecccc--cccccCCCEEEEcCcHHHHHHHHHHhccCcccCceEEEEcCCCcHHHHHHHHHHHH
Confidence            355556777777 445666554  112134569999999999999999999997743443 4445555433222111111


Q ss_pred             CCCCCCCCcEEEEEeCc---ccccccCccccccEEEEeCCChhhhccCCCH
Q 017957           92 LPSSKPKFQVAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTM  139 (363)
Q Consensus        92 ~~~~~~~~d~~VlE~g~---~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~  139 (363)
                      . .......++..|.-.   +..+ ......|+...++|+..|++|..++.
T Consensus       114 ~-~~g~~~~~~gT~g~~~~~~~~~-~~~~tTP~~~~l~~~~~~~~d~~~e~  162 (475)
T COG0769         114 K-KLGKKTALIGTEGDELSPGILE-PTGLTTPEALDLQNLLRDLLDRGAEI  162 (475)
T ss_pred             H-hcCCceEEEEEEeeeccCCccc-ccCCCCccHHHHHHHHHHHHHcCCcE
Confidence            1 112334455555532   2333 22236899999999999999988743

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=86.74  E-value=0.63  Score=39.76  Aligned_cols=26  Identities=38%  Similarity=0.681  Sum_probs=19.7

Q ss_pred             cEEEEeCCC--ChHHHHHHHHHHHHhcCCCeE
Q 017957           44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEAF   73 (363)
Q Consensus        44 ~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~   73 (363)
                      +.|+||||-  ||||++..|+    ..|+++.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~----~lg~~~i   28 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR----ELGYKVI   28 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH----HhCCcee
Confidence            369999985  7999998877    4466663

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=86.59  E-value=0.92  Score=41.77  Aligned_cols=26  Identities=35%  Similarity=0.577  Sum_probs=22.2

Q ss_pred             EEEEeCC--CChHHHHHHHHHHHHhcCC
Q 017957           45 ILAVTGT--NGKSTVVTFVGQMLNHLGI   70 (363)
Q Consensus        45 vI~VTGT--nGKTTT~~~l~~iL~~~g~   70 (363)
                      +|+|||+  .||||++.-+.++|...|.
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~   28 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGI   28 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence            5899995  6899999999999987664

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=86.50  E-value=1.1  Score=41.35  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=26.9

Q ss_pred             cEEEEe--CCCChHHHHHHHHHHHHhcCCCeEee
Q 017957           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        44 ~vI~VT--GTnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      ++|+|+  |-.|||||+.-|+..|.+.|+++.+.
T Consensus         2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllv   35 (273)
T PRK13232          2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLV   35 (273)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence            467776  46799999999999999999998643

>TIGR03453 partition_RepA plasmid partitioning protein RepA

Probab=86.17  E-value=1.1  Score=43.56  Aligned_cols=34  Identities=29%  Similarity=0.467  Sum_probs=28.8

Q ss_pred             CCcEEEEe---CCCChHHHHHHHHHHHHhcCCCeEee
Q 017957           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        42 ~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      +.++|+|+   |-.|||||+.-|++.|...|+++.+.
T Consensus       103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlI  139 (387)
T TIGR03453       103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAI  139 (387)
T ss_pred             CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            45789887   57799999999999999999988643

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=85.90  E-value=0.76  Score=41.70  Aligned_cols=29  Identities=28%  Similarity=0.404  Sum_probs=24.9

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHhcCCCeE
Q 017957           45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAF   73 (363)
Q Consensus        45 vI~VTGTnGKTTT~~~l~~iL~~~g~~~~   73 (363)
                      ++++.|-.||||++.-|++.|...|.+|-
T Consensus         6 i~s~kGGvG~TTltAnLA~aL~~~G~~Vl   34 (243)
T PF06564_consen    6 IVSPKGGVGKTTLTANLAWALARLGESVL   34 (243)
T ss_pred             EecCCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence            45566778999999999999999998874

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PRK05439 pantothenate kinase; Provisional

Probab=85.87  E-value=1.6  Score=41.26  Aligned_cols=27  Identities=26%  Similarity=0.428  Sum_probs=22.9

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHhc
Q 017957           42 SIKILAVTGT--NGKSTVVTFVGQMLNHL   68 (363)
Q Consensus        42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~   68 (363)
                      ...+|||||+  .||||++..|..+|...
T Consensus        85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~  113 (311)
T PRK05439         85 VPFIIGIAGSVAVGKSTTARLLQALLSRW  113 (311)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            4558999995  67999999999999764

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=85.86  E-value=1.3  Score=41.11  Aligned_cols=31  Identities=29%  Similarity=0.383  Sum_probs=27.3

Q ss_pred             cEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017957           44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      ++|+|+|  ..||||.+.-|...|++.| ++++.
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~I   34 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTV   34 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEE
Confidence            6899999  8899999999999999999 67543

>COG2403 Predicted GTPase [General function prediction only]

Probab=85.54  E-value=1.1  Score=42.73  Aligned_cols=32  Identities=34%  Similarity=0.508  Sum_probs=28.9

Q ss_pred             CCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeE
Q 017957           42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF   73 (363)
Q Consensus        42 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~   73 (363)
                      ..|+|+||||   .|||+++.+++++|++.|+++.
T Consensus       125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~  159 (449)
T COG2403         125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVC  159 (449)
T ss_pred             cCceEEEEEeccccchhHHHHHHHHHHHHcCCceE
Confidence            4689999997   6999999999999999999874

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=85.53  E-value=1.5  Score=37.03  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=27.9

Q ss_pred             cEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017957           44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      ++|+|+|  -.||||....|...|...|++++..
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~i   35 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVI   35 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence            6899999  6799999999999999999887543

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase

Probab=85.27  E-value=1.6  Score=38.52  Aligned_cols=32  Identities=19%  Similarity=0.189  Sum_probs=26.9

Q ss_pred             CCcEEEEe---CCCChHHHHHHHHHHHHh-cCCCeE
Q 017957           42 SIKILAVT---GTNGKSTVVTFVGQMLNH-LGIEAF   73 (363)
Q Consensus        42 ~~~vI~VT---GTnGKTTT~~~l~~iL~~-~g~~~~   73 (363)
                      ..++|+|+   |-.||||++..|++.|.. .|.++.
T Consensus        34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VL   69 (207)
T TIGR03018        34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVL   69 (207)
T ss_pred             CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence            56799999   578999999999999986 587764

Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.

>COG4240 Predicted kinase [General function prediction only]

Probab=85.25  E-value=1.6  Score=39.08  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=28.1

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHhcC-CCeEee
Q 017957           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLG-IEAFVG   75 (363)
Q Consensus        42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g-~~~~~~   75 (363)
                      +.-++||.|.  .||||++..|..+|.+.| .++.+.
T Consensus        49 rPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~l   85 (300)
T COG4240          49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATL   85 (300)
T ss_pred             CceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEe
Confidence            4558999995  789999999999999998 466443

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=85.03  E-value=0.92  Score=41.52  Aligned_cols=26  Identities=27%  Similarity=0.423  Sum_probs=23.3

Q ss_pred             eCCCChHHHHHHHHHHHHhcCCCeEe
Q 017957           49 TGTNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        49 TGTnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      -|-.|||||+.-|++.|...|+++.+
T Consensus         9 KGGvGKTT~~~nLA~~La~~G~kVll   34 (270)
T cd02040           9 KGGIGKSTTTQNLSAALAEMGKKVMI   34 (270)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCeEEE
Confidence            57889999999999999999998854

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=84.51  E-value=1.4  Score=37.07  Aligned_cols=32  Identities=22%  Similarity=0.345  Sum_probs=26.2

Q ss_pred             EEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017957           45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      +|+|+|  -.||||+...|...|+..|++++..-
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK   34 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIK   34 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            467777  46899999999999999998886544

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=84.37  E-value=1.7  Score=40.31  Aligned_cols=35  Identities=17%  Similarity=0.351  Sum_probs=28.4

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeec
Q 017957           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      +.++|.++|.  .|||||+.-|+..|...|.++.+..
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~  107 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA  107 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence            4568888884  6899999999999998888776544

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=84.36  E-value=1.6  Score=39.26  Aligned_cols=32  Identities=28%  Similarity=0.426  Sum_probs=26.8

Q ss_pred             cEEEEeC---CCChHHHHHHHHHHHHhcCCCeEee
Q 017957           44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        44 ~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      ++|+|++   -.||||++.-|+..|...|.++.+.
T Consensus         2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vlli   36 (246)
T TIGR03371         2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAI   36 (246)
T ss_pred             cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence            5677765   7799999999999999999988643

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=84.23  E-value=1.2  Score=38.25  Aligned_cols=30  Identities=23%  Similarity=0.375  Sum_probs=24.5

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHhcCCCeEe
Q 017957           45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        45 vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      +.+.-|-.||||++..|+..|...|+++.+
T Consensus         3 v~~~kGG~GKTt~a~~la~~la~~g~~Vll   32 (195)
T PF01656_consen    3 VTSGKGGVGKTTIAANLAQALARKGKKVLL   32 (195)
T ss_dssp             EEESSTTSSHHHHHHHHHHHHHHTTS-EEE
T ss_pred             EEcCCCCccHHHHHHHHHhccccccccccc
Confidence            345567889999999999999999999854

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=84.09  E-value=0.96  Score=40.22  Aligned_cols=26  Identities=27%  Similarity=0.442  Sum_probs=22.6

Q ss_pred             CcEEEEeC--CCChHHHHHHHHHHHHhc
Q 017957           43 IKILAVTG--TNGKSTVVTFVGQMLNHL   68 (363)
Q Consensus        43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~   68 (363)
                      ..+|||+|  ..||||.+..|...|...
T Consensus         8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~   35 (218)
T COG0572           8 VIIIGIAGGSGSGKTTVAKELSEQLGVE   35 (218)
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence            35999999  789999999999999744

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=84.09  E-value=1.6  Score=40.38  Aligned_cols=31  Identities=29%  Similarity=0.369  Sum_probs=25.8

Q ss_pred             cEEEEe--CCCChHHHHHHHHHHHHhcCCCeEe
Q 017957           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        44 ~vI~VT--GTnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      ++|+|+  |-.|||||+.-|++.|.+.|+++-+
T Consensus         2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLl   34 (279)
T PRK13230          2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLV   34 (279)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEE
Confidence            456665  4789999999999999999998854

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=83.88  E-value=2.1  Score=39.41  Aligned_cols=38  Identities=21%  Similarity=0.210  Sum_probs=29.5

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHhcCCC--eEeecccc
Q 017957           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIE--AFVGGNLG   79 (363)
Q Consensus        42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~--~~~~gnig   79 (363)
                      ..-+|||+||  .||+||+..+..+|+..+..  +.+...-|
T Consensus        81 ~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDG  122 (283)
T COG1072          81 RPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDG  122 (283)
T ss_pred             CCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccc
Confidence            4458999997  58999999999999998865  43444333

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=83.79  E-value=2.3  Score=39.68  Aligned_cols=27  Identities=26%  Similarity=0.428  Sum_probs=22.9

Q ss_pred             CCcEEEEeCCC--ChHHHHHHHHHHHHhc
Q 017957           42 SIKILAVTGTN--GKSTVVTFVGQMLNHL   68 (363)
Q Consensus        42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~   68 (363)
                      ..-+|||+|.+  ||||++.+|..+|+..
T Consensus        61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~   89 (290)
T TIGR00554        61 IPYIISIAGSVAVGKSTTARILQALLSRW   89 (290)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            45699999965  7999999999999853

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=83.57  E-value=1.7  Score=39.83  Aligned_cols=29  Identities=34%  Similarity=0.357  Sum_probs=24.4

Q ss_pred             EEEe--CCCChHHHHHHHHHHHHhcCCCeEe
Q 017957           46 LAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        46 I~VT--GTnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      |+|+  |-.|||||+.-|++.|...|+++.+
T Consensus         3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvll   33 (267)
T cd02032           3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQ   33 (267)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            4444  5789999999999999999999854

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PRK14974 cell division protein FtsY; Provisional

Probab=83.47  E-value=1.9  Score=41.19  Aligned_cols=35  Identities=17%  Similarity=0.364  Sum_probs=28.8

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeec
Q 017957           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      +..+|.++|.  .|||||..-+++.|...|.++.+.+
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~  175 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA  175 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence            3568999995  5799999999999999988876543

>PRK00784 cobyric acid synthase; Provisional

Probab=83.26  E-value=1.4  Score=44.32  Aligned_cols=30  Identities=40%  Similarity=0.479  Sum_probs=26.2

Q ss_pred             cEEEEeCC---CChHHHHHHHHHHHHhcCCCeE
Q 017957           44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAF   73 (363)
Q Consensus        44 ~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~   73 (363)
                      +.|-||||   .|||+++..|...|+++|++++
T Consensus         3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~   35 (488)
T PRK00784          3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVA   35 (488)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEe
Confidence            46788887   8999999999999999998764

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=83.17  E-value=2.1  Score=36.76  Aligned_cols=35  Identities=26%  Similarity=0.258  Sum_probs=29.2

Q ss_pred             CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017957           42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      ..++|+|+|  -.||||...-|...|...|++++..-
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik   41 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIK   41 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEE
Confidence            467999999  57999999999999999898886543

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=83.10  E-value=2.1  Score=40.81  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=30.1

Q ss_pred             CCCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017957           41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        41 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      ++.++|.|+|  ..||||++.-|+..|.+.|.++.+.
T Consensus        29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVlli   65 (329)
T cd02033          29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLI   65 (329)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            4567888887  7899999999999999999988654

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

>TIGR02016 BchX chlorophyllide reductase iron protein subunit X

Probab=82.96  E-value=1.9  Score=40.43  Aligned_cols=30  Identities=30%  Similarity=0.522  Sum_probs=24.9

Q ss_pred             EEEE--eCCCChHHHHHHHHHHHHhcCCCeEe
Q 017957           45 ILAV--TGTNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        45 vI~V--TGTnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      +|+|  -|-.|||||+.-|++.|.+.|+++.+
T Consensus         2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLl   33 (296)
T TIGR02016         2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQ   33 (296)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            4444  46889999999999999999998854

This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=82.87  E-value=1.8  Score=42.61  Aligned_cols=33  Identities=15%  Similarity=0.290  Sum_probs=29.2

Q ss_pred             CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017957           43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      +++|+|+|  -.||||...-|-..|+..|+++++.
T Consensus         1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavI   35 (452)
T PRK14495          1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTV   35 (452)
T ss_pred             CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            36899999  7899999999999999999998763

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=82.82  E-value=2  Score=39.58  Aligned_cols=31  Identities=29%  Similarity=0.333  Sum_probs=25.8

Q ss_pred             cEEEEe--CCCChHHHHHHHHHHHHhcCCCeEe
Q 017957           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        44 ~vI~VT--GTnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      ++|+|+  |-.|||||+.-|+..|.+.|+++-+
T Consensus         2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLl   34 (274)
T PRK13235          2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMV   34 (274)
T ss_pred             CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEE
Confidence            456666  4677999999999999999999854

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=82.74  E-value=3.9  Score=35.13  Aligned_cols=42  Identities=21%  Similarity=0.222  Sum_probs=32.0

Q ss_pred             eeHHHHHHhhCCCCCcEEEEeC--CCChHHHHHHHHHHHHhcCCC
Q 017957           29 MSELDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIE   71 (363)
Q Consensus        29 l~~~~~~~~~~~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~   71 (363)
                      ++..+...++. +...+|.++|  ..||||++..|...|...|..
T Consensus         5 ~~~~~~~~~~~-~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~   48 (184)
T TIGR00455         5 ITKDERQALNG-HRGVVIWLTGLSGSGKSTIANALEKKLESKGYR   48 (184)
T ss_pred             CCHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence            34445454544 4678999999  899999999999999877654

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=82.23  E-value=2  Score=37.19  Aligned_cols=31  Identities=19%  Similarity=0.419  Sum_probs=27.1

Q ss_pred             CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017957           43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF   73 (363)
Q Consensus        43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~   73 (363)
                      .+.|.|.|  ..||||.+.+|+.-|...|+++.
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~   35 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVL   35 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            46899999  67999999999999999887763

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=82.19  E-value=3.7  Score=37.57  Aligned_cols=114  Identities=19%  Similarity=0.216  Sum_probs=60.3

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeeccc-chhhhhhhh--hcc----------------cCC-------
Q 017957           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGNL-GNPLSEAAF--HCI----------------ALP-------   93 (363)
Q Consensus        42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~gni-g~p~~~~~~--~~~----------------~~~-------   93 (363)
                      +..+|||||+  .||||...-|...|.+.|.+++...-- ..|++...+  +++                .+.       
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            5679999996  689999999999999999998643210 111111000  000                000       


Q ss_pred             ---------CCCCCCcEEEEEeC-cccccccCc-cccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEe
Q 017957           94 ---------SSKPKFQVAVVEVS-SYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP  162 (363)
Q Consensus        94 ---------~~~~~~d~~VlE~g-~~~l~~~~~-~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n  162 (363)
                               .....+|+.++|.- -||-+..-. ....-+.|++.=.-|-+.         ..|++|++-   .+..|+|
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ---------~~KaGimEi---aDi~vVN  175 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQ---------AIKAGIMEI---ADIFVVN  175 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCC---------TB-TTHHHH----SEEEEE
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHH---------HHhhhhhhh---ccEEEEe
Confidence                     01356899999975 576553211 133344555554444333         457777774   6789999


Q ss_pred             CCChh
Q 017957          163 FGNQH  167 (363)
Q Consensus       163 ~dd~~  167 (363)
                      ..|..
T Consensus       176 KaD~~  180 (266)
T PF03308_consen  176 KADRP  180 (266)
T ss_dssp             --SHH
T ss_pred             CCChH
Confidence            88843

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=81.97  E-value=2.7  Score=41.13  Aligned_cols=36  Identities=17%  Similarity=0.312  Sum_probs=29.5

Q ss_pred             CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeecc
Q 017957           42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN   77 (363)
Q Consensus        42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~gn   77 (363)
                      ++.+|-..|  -.|||||+.=|+.-|+..|+++.+.+.
T Consensus        99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaa  136 (451)
T COG0541          99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAA  136 (451)
T ss_pred             CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEec
Confidence            345677777  579999999999999999999976554

>PRK13233 nifH nitrogenase reductase; Reviewed

Probab=81.86  E-value=2.1  Score=39.36  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=25.8

Q ss_pred             cEEEEe--CCCChHHHHHHHHHHHHh-cCCCeEee
Q 017957           44 KILAVT--GTNGKSTVVTFVGQMLNH-LGIEAFVG   75 (363)
Q Consensus        44 ~vI~VT--GTnGKTTT~~~l~~iL~~-~g~~~~~~   75 (363)
                      ++|+|+  |-.|||||+.-|+..|.. .|+++.+.
T Consensus         3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLli   37 (275)
T PRK13233          3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIH   37 (275)
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence            466666  567899999999999997 59998654

>PRK03846 adenylylsulfate kinase; Provisional

Probab=81.81  E-value=4  Score=35.60  Aligned_cols=43  Identities=26%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             eeHHHHHHhhCCCCCcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017957           29 MSELDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA   72 (363)
Q Consensus        29 l~~~~~~~~~~~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~   72 (363)
                      ++..+...+.. ++..+|+++|  -.||||.+..|...|...|..+
T Consensus        11 v~~~~~~~~~~-~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~   55 (198)
T PRK03846         11 VTKAQREQLHG-HKGVVLWFTGLSGSGKSTVAGALEEALHELGVST   55 (198)
T ss_pred             CCHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCE
Confidence            34455555554 4678999999  8899999999999998776543

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=81.62  E-value=2.5  Score=40.09  Aligned_cols=35  Identities=17%  Similarity=0.290  Sum_probs=28.2

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeec
Q 017957           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      +..+|++.|.  .|||||+.-|+..|...|.++.+.+
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~  149 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA  149 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence            4568888884  5799999999999999887776544

>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms

Probab=81.60  E-value=3.2  Score=33.83  Aligned_cols=45  Identities=22%  Similarity=0.278  Sum_probs=32.8

Q ss_pred             EEEeCC-CChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhhcccCCCCCCCCcEEEEEeCc
Q 017957           46 LAVTGT-NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSS  108 (363)
Q Consensus        46 I~VTGT-nGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~  108 (363)
                      +-|||+ .|||+++.-+...|++.|.+++..-    |.              ..+|+.++|-..
T Consensus         3 ~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~k----p~--------------~~~d~vliEGaG   48 (134)
T cd03109           3 GFGTGTDIGKTVATAILARALKEKGYRVAPLK----PV--------------QTYDFVLVEGAG   48 (134)
T ss_pred             EEeCCCCcCHHHHHHHHHHHHHHCCCeEEEEe----cC--------------CCCCEEEEECCC
Confidence            345553 7999999999999999998885432    11              126889999763

The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=81.56  E-value=2.5  Score=36.29  Aligned_cols=32  Identities=22%  Similarity=0.452  Sum_probs=26.8

Q ss_pred             EEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017957           45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      +|+|.|  ..||||.+..|+..|...|.++...+
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~   35 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTR   35 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            688888  67999999999999999898775433

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>TIGR01287 nifH nitrogenase iron protein

Probab=81.50  E-value=2.2  Score=39.29  Aligned_cols=30  Identities=27%  Similarity=0.431  Sum_probs=25.1

Q ss_pred             EEEEe--CCCChHHHHHHHHHHHHhcCCCeEe
Q 017957           45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        45 vI~VT--GTnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      .|+|.  |-.|||||+.-|+..|...|+++.+
T Consensus         2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vll   33 (275)
T TIGR01287         2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMI   33 (275)
T ss_pred             eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEE
Confidence            45555  5789999999999999999998854

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=81.38  E-value=2.6  Score=41.57  Aligned_cols=34  Identities=18%  Similarity=0.276  Sum_probs=28.9

Q ss_pred             CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017957           43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      ..+|.++|  -.|||||+.-|+..|+..|.++.+..
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~  135 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVC  135 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence            46888998  56899999999999999998886544

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK12374 putative dithiobiotin synthetase; Provisional

Probab=81.21  E-value=2.4  Score=38.09  Aligned_cols=31  Identities=29%  Similarity=0.187  Sum_probs=25.9

Q ss_pred             EEEEeCC---CChHHHHHHHHHHHHhcCCCeEee
Q 017957           45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        45 vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      .|-||||   .|||+++..|.+.|+++|.+++.+
T Consensus         4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~   37 (231)
T PRK12374          4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGY   37 (231)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            4666665   799999999999999999988644

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=80.98  E-value=2.1  Score=38.24  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=19.9

Q ss_pred             EEEEeCC--CChHHHHHHHHHHHHh
Q 017957           45 ILAVTGT--NGKSTVVTFVGQMLNH   67 (363)
Q Consensus        45 vI~VTGT--nGKTTT~~~l~~iL~~   67 (363)
                      +|||+|.  .||||++..|...|+.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~   25 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSR   25 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence            5889995  5899999999999975

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=80.90  E-value=2.5  Score=38.25  Aligned_cols=31  Identities=26%  Similarity=0.500  Sum_probs=26.0

Q ss_pred             cEEEEeC---CCChHHHHHHHHHHHHhcCCCeEe
Q 017957           44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        44 ~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      ++|+|++   -.||||++.-++..|...|.++.+
T Consensus         2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vll   35 (261)
T TIGR01968         2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVL   35 (261)
T ss_pred             eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEE
Confidence            4677765   678999999999999999988754

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A

Probab=80.72  E-value=2.3  Score=37.08  Aligned_cols=30  Identities=30%  Similarity=0.346  Sum_probs=26.2

Q ss_pred             EEEEeCC---CChHHHHHHHHHHHHhcCCCeEe
Q 017957           45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        45 vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      .|-||||   .|||+++..|.+.|++.|.+++.
T Consensus         2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~   34 (199)
T PF13500_consen    2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVGY   34 (199)
T ss_dssp             EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEE
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence            5678887   69999999999999999998864

...

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=80.65  E-value=1.7  Score=39.77  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=23.0

Q ss_pred             eCCCChHHHHHHHHHHHHhcCCCeEe
Q 017957           49 TGTNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        49 TGTnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      -|-.|||||+.-|+..|.+.|+++-+
T Consensus         8 KGGVGKTT~~~nLA~~La~~g~rVLl   33 (268)
T TIGR01281         8 KGGIGKSTTSSNLSVAFAKLGKRVLQ   33 (268)
T ss_pred             CCcCcHHHHHHHHHHHHHhCCCeEEE
Confidence            46889999999999999999998853

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=80.39  E-value=2.2  Score=37.15  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=18.8

Q ss_pred             EEEEeC--CCChHHHHHHHHHHH
Q 017957           45 ILAVTG--TNGKSTVVTFVGQML   65 (363)
Q Consensus        45 vI~VTG--TnGKTTT~~~l~~iL   65 (363)
                      +|+|+|  ..||||++..|..+|
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            588999  679999999999998

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=80.31  E-value=2.2  Score=40.33  Aligned_cols=33  Identities=21%  Similarity=0.407  Sum_probs=27.7

Q ss_pred             CCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEe
Q 017957           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      ++.+|-+.|.|  |||||..=|++.|.+.|+++-+
T Consensus       138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vll  172 (340)
T COG0552         138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLL  172 (340)
T ss_pred             CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEE
Confidence            45678888876  6999999999999999998843

>PRK05480 uridine/cytidine kinase; Provisional

Probab=80.27  E-value=2.1  Score=37.67  Aligned_cols=25  Identities=28%  Similarity=0.466  Sum_probs=21.8

Q ss_pred             CCCcEEEEeC--CCChHHHHHHHHHHH
Q 017957           41 RSIKILAVTG--TNGKSTVVTFVGQML   65 (363)
Q Consensus        41 ~~~~vI~VTG--TnGKTTT~~~l~~iL   65 (363)
                      .+..+|+|+|  ..||||++..|...|
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4667999999  579999999999988

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=80.17  E-value=1.7  Score=36.37  Aligned_cols=25  Identities=32%  Similarity=0.333  Sum_probs=20.1

Q ss_pred             CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017957           42 SIKILAVTGTN--GKSTVVTFVGQMLN   66 (363)
Q Consensus        42 ~~~vI~VTGTn--GKTTT~~~l~~iL~   66 (363)
                      ..|-|-||||-  ||||+++.|+..+.
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae~~~   32 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAEKTG   32 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHHHhC
Confidence            35679999984  79999999996653

>PRK11670 antiporter inner membrane protein; Provisional

Probab=80.12  E-value=2.8  Score=40.65  Aligned_cols=33  Identities=27%  Similarity=0.277  Sum_probs=28.4

Q ss_pred             CcEEEEe---CCCChHHHHHHHHHHHHhcCCCeEee
Q 017957           43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        43 ~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      .++|+|+   |-.|||||+.-|+..|.+.|+++.+.
T Consensus       107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLI  142 (369)
T PRK11670        107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGIL  142 (369)
T ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            4689997   56789999999999999999998643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	363
3lk7_A	451	The Crystal Structure Of Udp-N-Acetylmuramoylalanin		1e-17
1e0d_A	437	Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase L		1e-16
2uag_A	437	Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase L		6e-16
2jff_A	445	Crystal Structure Of Murd Ligase In Complex With D-		6e-16
2wjp_A	439	Crystal Structure Of Murd Ligase In Complex With D-		7e-16

>pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D- Glutamate (Murd) Ligase From Streptococcus Agalactiae To 1.5a Length = 451

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 147/295 (49%), Gaps = 31/295 (10%)
Query: 28  VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
           V++E++ A  V     +++ +TG+NGK+T  T + ++LN  G    + GN+G P SE   
Sbjct: 99  VLTEVELAYLV--SESQLIGITGSNGKTTTTTXIAEVLNAGGQRGLLAGNIGFPASE--- 153
Query: 88  HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
             +   + K      V E+SS+Q+    K F P ++V+ NL P HL+ H + ++Y   K 
Sbjct: 154 -VVQAANDKDTL---VXELSSFQL-XGVKEFRPHIAVITNLXPTHLDYHGSFEDYVAAKW 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVPA 203
           ++ +   ++   +L F NQ +++ +   +   A I  F    K+D    + K   ++   
Sbjct: 209 NIQNQXSSSDFLVLNF-NQGISKELA--KTTKATIVPFSTTEKVDGAYVQDKQLFYKGEN 265
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
           +  V      ++ V G HN  N A+A ++V  L  G+  + +  T+       HR+Q + 
Sbjct: 266 IXSVD-----DIGVPGSHNVEN-ALATIAVAKL-AGISNQVIRETLSNFGGVKHRLQSLG 318
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
           + + G+++ +DSK+TN+ AT   L      K +++ GG  +       N F++LI
Sbjct: 319 K-VHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDR------GNEFDELI 366

>pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase Length = 437

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 129/284 (45%), Gaps = 65/284 (22%)
Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G+   VGGN+G P         AL     + ++ V+
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 156
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
           E+SS+Q+E  +       + +LN+T DH++R+   ++ Y   K  ++ +    +VN    
Sbjct: 157 ELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDA 215
Query: 160 L-LP--------------FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
           L +P               G+ HLN     H+    W+    G K+              
Sbjct: 216 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQI 261
                L +  MK+ G+HNY NA  A                 S+++ L T    PHR ++
Sbjct: 256 -----LNVKEMKLSGQHNYTNALAALALAD-----AAGLPRASSLKALTTFTGLPHRFEV 305
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAK 304
           V  +  GV W++DSKATN+ +T   L  L     + +LLGG  K
Sbjct: 306 V-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK 348

>pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase Length = 437

Iteration: 1
 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 65/284 (22%)
Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G+   VGGN+G P         AL     + ++ V+
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 156
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
           E+SS+Q+E  +       + +LN+T DH++R+   ++ Y      ++ +    +VN    
Sbjct: 157 ELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVCVVNADDA 215
Query: 160 L-LP--------------FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
           L +P               G+ HLN     H+    W+    G K+              
Sbjct: 216 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQI 261
                L +  MK+ G+HNY NA  A                 S+++ L T    PHR ++
Sbjct: 256 -----LNVKEMKLSGQHNYTNALAALALAD-----AAGLPRASSLKALTTFTGLPHRFEV 305
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAK 304
           V  +  GV W++DSKATN+ +T   L  L     + +LLGG  K
Sbjct: 306 V-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK 348

>pdb|2JFF|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu Containing Sulfonamide Inhibitor Length = 445

Iteration: 1
 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 65/284 (22%)
Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G+   VGGN+G P         AL     + ++ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
           E+SS+Q+E  +       + +LN+T DH++R+   ++ Y      ++ +    +VN    
Sbjct: 158 ELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVCVVNADDA 216
Query: 160 L-LP--------------FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
           L +P               G+ HLN     H+    W+    G K+              
Sbjct: 217 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQI 261
                L +  MK+ G+HNY NA  A                 S+++ L T    PHR ++
Sbjct: 257 -----LNVKEMKLSGQHNYTNALAALALAD-----AAGLPRASSLKALTTFTGLPHRFEV 306
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAK 304
           V  +  GV W++DSKATN+ +T   L  L     + +LLGG  K
Sbjct: 307 V-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK 349

>pdb|2WJP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu Containing Rhodanine Inhibitor Length = 439

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 65/284 (22%)
Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G+   VGGN+G P         AL     + ++ V+
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 156
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
           E+SS+Q+E  +       + +LN+T DH++R+   ++ Y      ++ +    +VN    
Sbjct: 157 ELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVCVVNADDA 215
Query: 160 L-LP--------------FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
           L +P               G+ HLN     H+    W+    G K+              
Sbjct: 216 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQI 261
                L +  MK+ G+HNY NA  A                 S+++ L T    PHR ++
Sbjct: 256 -----LNVKEMKLSGQHNYTNALAALALAD-----AAGLPRASSLKALTTFTGLPHRFEV 305
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAK 304
           V  +  GV W++DSKATN+ +T   L  L     + +LLGG  K
Sbjct: 306 V-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK 348

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	363
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	1e-68
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	1e-64
1e8c_A	498	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami	7e-20
1gg4_A	452	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino	2e-17
2wtz_A	535	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di	6e-17
2am1_A	454	SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl	3e-16
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	6e-12
1j6u_A	469	UDP-N-acetylmuramate-alanine ligase MURC; structur	1e-07
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	1e-05
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	2e-05

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451

 Score =  221 bits (566), Expect = 1e-68
 Identities = 71/316 (22%), Positives = 139/316 (43%), Gaps = 31/316 (9%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           +   L+    V++E++ A  V     +++ +TG+NGK+T  T + ++LN  G    + GN
Sbjct: 89  VKKALEKQIPVLTEVELAYLVSES--QLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGN 146

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERH 136
           +G P SE          +       V+E+SS+Q+  +    F P ++V+ NL P HL+ H
Sbjct: 147 IGFPASEVV-------QAANDKDTLVMELSSFQLMGVKE--FRPHIAVITNLMPTHLDYH 197

Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG---AFPGVKIDTE 193
            + ++Y   K ++ + M ++   +L F      E  K  +  +          G  +  +
Sbjct: 198 GSFEDYVAAKWNIQNQMSSSDFLVLNFNQGISKELAKTTKATIVPFSTTEKVDGAYVQDK 257

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
                 E         + + ++ V G HN  NA       +    G+  + +  T+    
Sbjct: 258 QLFYKGEN-------IMSVDDIGVPGSHNVENALATIA--VAKLAGISNQVIRETLSNFG 308

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
              HR+Q +   + G+++ +DSK+TN+ AT   L      K +++ GG  +       N 
Sbjct: 309 GVKHRLQSL-GKVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDR------GNE 361

Query: 314 FEKLIEPLNHHRCVIT 329
           F++LI  +   + ++ 
Sbjct: 362 FDELIPDITGLKHMVV 377

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439

 Score =  210 bits (537), Expect = 1e-64
 Identities = 83/334 (24%), Positives = 139/334 (41%), Gaps = 68/334 (20%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           L+    +G  ++ +++   +       I+A+TG+NGKSTV T VG+M    G+   VGGN
Sbjct: 81  LSAAADAGIEIVGDIELFCREAQA--PIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN 138

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERH 136
           +G P                + ++ V+E+SS+Q+E   +       + +LN+T DH++R+
Sbjct: 139 IGLPALMLL---------DDECELYVLELSSFQLETTSS--LQAVAATILNVTEDHMDRY 187

Query: 137 K-TMKNYALTKCHLFSH---------------MVNTKLGLLPFGNQHLNEAIKGHRFNLA 180
              ++ Y   K  ++ +               +       + FG    +  +  H+    
Sbjct: 188 PFGLQQYRAAKLRIYENAKVCVVNADDALTMPIRGADERCVSFGVNMGDYHL-NHQQGET 246

Query: 181 WIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
           W+    G K+                   L +  MK+ G+HNY NA  A    L    G+
Sbjct: 247 WL-RVKGEKV-------------------LNVKEMKLSGQHNYTNALAALA--LADAAGL 284

Query: 241 DVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI 297
              +    ++ L T    PHR ++V  +  GV W++DSKATN+ +T   L  L     + 
Sbjct: 285 PRASS---LKALTTFTGLPHRFEVV-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLH 340

Query: 298 LL-GGQAKVLNGQESNGFEKLIEPLNHH-RCVIT 329
           LL GG  K      S  F  L   LN     +  
Sbjct: 341 LLLGGDGK------SADFSPLARYLNGDNVRLYC 368

>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 498

 Score = 89.6 bits (223), Expect = 7e-20
 Identities = 55/261 (21%), Positives = 96/261 (36%), Gaps = 45/261 (17%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSS----- 95
            +++++ VTGTNGK+T    + Q    LG  + V G +GN L         +P+      
Sbjct: 106 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKV-----IPTENTTGS 160

Query: 96  ------------KPKFQVAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
                               +EVSS    Q  +    F    SV  NL+ DHL+ H  M+
Sbjct: 161 AVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKF--AASVFTNLSRDHLDYHGDME 218

Query: 141 NYALTKCHLFSHMVNTKLGLL----PFGNQHLNEA-------IKGHRFNLAWIGAFPGVK 189
           +Y   K  L+S   +    ++      G + L +        ++ H             +
Sbjct: 219 HYEAAKWLLYS-EHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATE 277

Query: 190 IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
           ++     A+    +     +++ H   +MG  N  N  +A  ++L L  G  +  L  T 
Sbjct: 278 VNYHDSGATIRFSSSWGDGEIESH---LMGAFNVSNLLLALATLLAL--GYPLADLLKTA 332

Query: 250 EILRTPPHRMQIVHRDIQGVT 270
             L+    RM++        T
Sbjct: 333 ARLQPVCGRMEVFTAP-GKPT 352

>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 452

 Score = 82.6 bits (205), Expect = 2e-17
 Identities = 60/294 (20%), Positives = 123/294 (41%), Gaps = 50/294 (17%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN----PLSEAAFHCIALPSSKP 97
             +++A+TG++GK++V      +L+  G   +  GNL N    P++        L    P
Sbjct: 99  PARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMT--------LLRLTP 150

Query: 98  KFQVAVVEVS-SYQMEIPNKYFC----PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH 152
           ++  AV+E+  ++Q EI   +      P  ++V NL   HLE   ++   A  K  +FS 
Sbjct: 151 EYDYAVIELGANHQGEI--AWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG 208

Query: 153 MVNTKLGLLPFGNQHLN---EAIKGHR---FNLAWIGA-FPGVKIDTEAKTASFEVPAVG 205
           +    + ++   N         I   +   F+     + F    I   +    F +    
Sbjct: 209 LPENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPT 268

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265
               + L    + GRHN  N A+AA ++  + +G  ++A+ + +  L+  P R+  +   
Sbjct: 269 GSVDVLLP---LPGRHNIAN-ALAAAAL-SMSVGATLDAIKAGLANLKAVPGRLFPIQLA 323

Query: 266 IQGVTWVDDS--------KATNLEATCTGLMDLKGHKCVIL-----LGGQAKVL 306
            +    +DDS         A  ++     L ++ G++ +++     LG +++  
Sbjct: 324 -ENQLLLDDSYNANVGSMTAA-VQV----LAEMPGYRVLVVGDMAELGAESEAC 371

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* Length = 535

 Score = 81.1 bits (201), Expect = 6e-17
 Identities = 59/262 (22%), Positives = 91/262 (34%), Gaps = 47/262 (17%)

Query: 40  PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSK--- 96
              + ++ +TGT+GK+T    V   L   G  A + G +G  +  A      LPS+    
Sbjct: 143 SERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGA-----DLPSALTTP 197

Query: 97  --PKFQ------------VAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
             P  Q              V+EVSS       +    F   V    NL+ DHL+ H +M
Sbjct: 198 EAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRF--AVGAFTNLSRDHLDFHPSM 255

Query: 140 KNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEAIKGHRF-----NLAWIGAFPGV 188
            +Y   K  LF      +            G + +                A   A    
Sbjct: 256 ADYFEAKASLFDPDSALRARTAVVCIDDDAG-RAMAARAADAITVSAADRPAHWRATDVA 314

Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
             D   +  +   PA GV   + +    + GR+N  N  VA   +  +  GV  E     
Sbjct: 315 PTDAGGQQFTAIDPA-GVGHHIGIR---LPGRYNVANCLVALAILDTV--GVSPEQAVPG 368

Query: 249 IEILRTPPHRMQIVHRDIQGVT 270
           +  +R  P R++ + R  QG  
Sbjct: 369 LREIR-VPGRLEQIDRG-QGFL 388

>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* Length = 454

 Score = 78.4 bits (194), Expect = 3e-16
 Identities = 55/295 (18%), Positives = 91/295 (30%), Gaps = 56/295 (18%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN----PLSEAAFHCIALPSSKP 97
           ++ + AVTG+NGK+T    +  +L+         GN  N    P +        +     
Sbjct: 99  TVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGLPYT--------VLHMPE 150

Query: 98  KFQVAVVEVSSYQM------EIPNKYFC----PTVSVVLNLTPDHLERHKTMKNYALTKC 147
             +  V+E     M      +I          P  ++V  +   HL   K     A  K 
Sbjct: 151 GTEKLVLE-----MGQDHLGDI--HLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKM 203

Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHR---FNLAWIGAFPGVKIDTEAKTASFEVPAV 204
            +   M +  L L P      +      +   F            +     + +F+   +
Sbjct: 204 QIADGMASGSLLLAPADPIVEDYLPIDKKVVRFGQG--AELEITDLVERKDSLTFKANFL 261

Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
                L +      G++N  NA   A  V  L  GV  E +    + L    +R +    
Sbjct: 262 EQALDLPV-----TGKYNATNAM-IASYV-ALQEGVSEEQIRLAFQHLELTRNRTEWKKA 314

Query: 265 DIQGVTWVDDS--------KATNLEATCTGLMDLKGHKCVIL-----LGGQAKVL 306
              G   + D         K   LE       +  G K  +L     LG Q+  L
Sbjct: 315 A-NGADILSDVYNANPTAMKLI-LETFSAIPANEGGKKIAVLADMKELGDQSVQL 367

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} Length = 326

 Score = 65.0 bits (159), Expect = 6e-12
 Identities = 55/245 (22%), Positives = 96/245 (39%), Gaps = 22/245 (8%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVG 75
           +  +L  G   +S   + ++ +     +L V GT+GK+T  + +  +L + G+     +G
Sbjct: 83  VEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIG 142

Query: 76  GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-----YFCPTVSVVLNLTP 130
           G   N    A            +    V+E   Y     +K     ++ P  +V+ NL  
Sbjct: 143 GVPENFGVSARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEF 202

Query: 131 DHLERHKTMKNYALTKCHLFSHMVNTK----LGLLPFGNQHLNEAI-KGHRFNLAWIGAF 185
           DH +    +          F ++V T     L +     Q L + + KG    +   G  
Sbjct: 203 DHADIFADLGAIQTQ----FHYLVRTVPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGTE 258

Query: 186 PGVKIDTEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDV 242
            G +        SF+V   G    +++     +MGRHN  NA   +AA   +G+DI    
Sbjct: 259 HGWQAGEANADGSFDVLLDGKTAGRVKWD---LMGRHNRMNALAVIAAARHVGVDIQTAC 315

Query: 243 EALNS 247
           EAL +
Sbjct: 316 EALGA 320

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Length = 469

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 49/246 (19%), Positives = 77/246 (31%), Gaps = 52/246 (21%)

Query: 47  AVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           AVTGT+GK+T    V  +L HL      F+GG + +              +       V 
Sbjct: 118 AVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNY-----EKGNG----PVVY 168

Query: 105 E----VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG 159
           E       +        F P   ++ N   DHLE +  ++  Y       F  +      
Sbjct: 169 ELDESEEFFS------EFSPNYLIITNARGDHLENYGNSLTRYRSA----FEKISR-NTD 217

Query: 160 LL-----PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG-VVSQLQLH 213
           L+          HL +   G                          V   G    +L+L 
Sbjct: 218 LVVTFAEDELTSHLGDVTFG--VKKGTYTL---EMRSASRAEQKAMVEKNGKRYLELKLK 272

Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE----ILRTPPHRMQIVHR-DIQG 268
              V G HN  NA  A +++    +G D+  +   +E    + R    R  I        
Sbjct: 273 ---VPGFHNVLNAL-AVIAL-FDSLGYDLAPVLEALEEFRGVHR----RFSIAFHDPETN 323

Query: 269 VTWVDD 274
           +  +DD
Sbjct: 324 IYVIDD 329

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Length = 524

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 55/277 (19%), Positives = 103/277 (37%), Gaps = 57/277 (20%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGNPLSEA----AFHCIA-LPSSKPK 98
           +AV GT+GK+T  T +  +L++ GI+A   +GG      ++      F   + L + K  
Sbjct: 125 IAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYLGTEKDD 184

Query: 99  FQVA------VVEV----SSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
              +      V+E     S++  +     ++ P  +++ NL  DH +    +        
Sbjct: 185 SDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAIQTQ-- 242

Query: 148 HLFSHMVNTK----LGLLPFGNQHLNEAI------KGHRFNLAWIGAFPGVKIDTEAKT- 196
             F HMV         ++P     L + +         R ++         + D+  +  
Sbjct: 243 --FHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENS 300

Query: 197 -----------------ASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLD 237
                            + F V          L N  + G HN +NA  A+AA   +G+ 
Sbjct: 301 QAENSSDWQAELISADGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNIGVS 360

Query: 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDD 274
           +     AL++   I R    RM+++  D+  +   DD
Sbjct: 361 VKTACAALSAFAGIKR----RMELIG-DVNDILVFDD 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 48/393 (12%), Positives = 98/393 (24%), Gaps = 126/393 (32%)

Query: 24  SGKRVMSELDFAAQVIPRSIKILAVTGTN------GKSTVVTFVGQMLNHLGIEAFVGGN 77
           SGK  +     A  V   S K+                     V +ML  L         
Sbjct: 161 SGKTWV-----ALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY------Q 208

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME--IPN--------------KYF--- 118
           +    +  + H   +     +      E+          N                F   
Sbjct: 209 IDPNWTSRSDHSSNIKL---RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 119 CPTV------SVVLNLTPDHLERHKTMKNY--ALTKC---HLFSHMVNTKLGLLPFGNQH 167
           C  +       V   L+      H ++ ++   LT      L    ++ +   LP     
Sbjct: 266 CKILLTTRFKQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP----- 319

Query: 168 LNEAIKGHRFNLAWIGA----FPGV-----KIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
             E +  +   L+ I                ++ +  T   E      ++ L+       
Sbjct: 320 -REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES----SLNVLEPAEY--- 371

Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
            R  +       LSV        +            P   + ++        W D  K+ 
Sbjct: 372 -RKMFD-----RLSVFPPS--AHI------------PTILLSLI--------WFDVIKSD 403

Query: 279 NLEATCT----GLMDLKGHKCVILLGGQAKVLNGQESNGFE---KLIEPLNHHRCVITVC 331
            +          L++ +  +  I +      L  +  N +     +++  N  +      
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT----- 458

Query: 332 ALLFLKIVIQFPKKEFSLPFSF-FLFSFCVDHH 363
                     F   +   P+   + +S  + HH
Sbjct: 459 ----------FDSDDLIPPYLDQYFYSH-IGHH 480

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 57/360 (15%), Positives = 115/360 (31%), Gaps = 85/360 (23%)

Query: 7   FLLEFQLKATGLACLLQSGKRVMS--ELDF---AAQVIPRSIKILAVTGTNGKSTVVTFV 61
           F+  F  K           K ++S  E+D    +   +  ++++     +  +  V  FV
Sbjct: 29  FVDNFDCKDV-----QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83

Query: 62  GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
            ++L           N    +S         PS   +  +   +      ++  KY    
Sbjct: 84  EEVLRI---------NYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHL-NEAIKGHR---- 176
           +   L L    L   +  KN  +              G+L  G   +  +    ++    
Sbjct: 134 LQPYLKLR-QALLELRPAKNVLI---D----------GVLGSGKTWVALDVCLSYKVQCK 179

Query: 177 --FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234
             F + W+          E            V+  LQ   +      N+      + S  
Sbjct: 180 MDFKIFWLNL--KNCNSPET-----------VLEMLQ--KLLYQIDPNWT-----SRSDH 219

Query: 235 GLDIGVDVEALNSTI-EILRTPPH-RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG 292
             +I + + ++ + +  +L++ P+    +V  ++       ++KA    A      +L  
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV----Q--NAKA--WNA-----FNL-- 264

Query: 293 HKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITVCAL--LFLKIVIQFPKKEFSLP 350
             C ILL  + K +    S      I  L+HH   +T   +  L LK +     +   LP
Sbjct: 265 -SCKILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYL---DCRPQDLP 319

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 35/248 (14%), Positives = 67/248 (27%), Gaps = 59/248 (23%)

Query: 1   MWMLWLFLLEFQLKATGLACLLQSGKRVMSEL--DFAAQVIPRSIKI----LAVTGTNGK 54
            W  W  +   +L     + L         ++    +  V P S  I    L++   +  
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--VFPPSAHIPTILLSLIWFDVI 400

Query: 55  STVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE---VSSYQM 111
            + V     ++N L   + V               I L           +    V  Y  
Sbjct: 401 KSDV---MVVVNKLHKYSLVEKQPKESTIS--IPSIYLELKVKLENEYALHRSIVDHYN- 454

Query: 112 EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEA 171
               K F        +L P +L+       Y       +SH     +G       HL   
Sbjct: 455 --IPKTFDSD-----DLIPPYLD------QY------FYSH-----IG------HHLKNI 484

Query: 172 IKGHRF--------NLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
               R         +  ++      KI  ++   +     +  + QL+ +   +      
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQ----KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 224 HNAAVAAL 231
           +   V A+
Sbjct: 541 YERLVNAI 548

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Length = 475

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 52/256 (20%), Positives = 88/256 (34%), Gaps = 60/256 (23%)

Query: 47  AVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           AV GT+GK+T    +  +     ++     GG + +    A      L +S+      + 
Sbjct: 122 AVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAH-----LGASR----YLIA 172

Query: 105 E----VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG 159
           E     +S+       +  P VSVV N+ PDH++ ++   +    T    +   ++    
Sbjct: 173 EADESDASFL------HLQPMVSVVTNMEPDHMDTYEGDFEKMKAT----YVKFLH---- 218

Query: 160 LLPFG--------NQHLNEAIKGHRFNLAWIGAFPG-----VKIDTEAKTASFEVPAVG- 205
            LPF         +  L E +      +   G            +       + V     
Sbjct: 219 NLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNN 278

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE----ILRTPPHRMQI 261
               + L+   V G+HN  NA  AAL+V   + G+  EA+   +       R    R   
Sbjct: 279 ERINVLLN---VPGKHNALNAT-AALAV-AKEEGIANEAILEALADFQGAGR----RFDQ 329

Query: 262 ---VHRDIQGVTWVDD 274
                R    V  VDD
Sbjct: 330 LGEFIRPNGKVRLVDD 345

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Length = 491

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 50/261 (19%), Positives = 88/261 (33%), Gaps = 65/261 (24%)

Query: 47  AVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           A+ GT+GK+T    V  +    G++     GG +      A      L   +      + 
Sbjct: 123 AIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHAR-----LGHGR----YLIA 173

Query: 105 EV----SSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG 159
           E     +S+       +  P V++V N+  DH++ ++   +N   T    F + ++    
Sbjct: 174 EADESDASFL------HLQPMVAIVTNIEADHMDTYQGDFENLKQT----FINFLH---- 219

Query: 160 LLPFG--------NQHLNEAIKGHRFNLAWIGAFPG-----VKIDTEAKTASFEVPAVG- 205
            LPF         +  + E +          G                    F +     
Sbjct: 220 NLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDK 279

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE----ILRTPPHRMQI 261
              ++ L+     GRHN  NAA AA++V   + G+D EA+   +E      R    R   
Sbjct: 280 EPMRVTLN---APGRHNALNAA-AAVAV-ATEEGIDDEAILRALESFQGTGR----RFDF 330

Query: 262 V--------HRDIQGVTWVDD 274
           +        +        VDD
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDD 351

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	363
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	100.0
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	100.0
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	100.0
1gg4_A	452	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino	100.0
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	100.0
2am1_A	454	SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl	100.0
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	100.0
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	100.0
1j6u_A	469	UDP-N-acetylmuramate-alanine ligase MURC; structur	100.0
1e8c_A	498	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami	100.0
2wtz_A	535	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di	100.0
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	100.0
2vos_A	487	Folylpolyglutamate synthase protein FOLC; ligase,	100.0
1jbw_A	428	Folylpolyglutamate synthase; FPGS folate AMPPCP te	100.0
3nrs_A	437	Dihydrofolate:folylpolyglutamate synthetase; struc	100.0
1o5z_A	442	Folylpolyglutamate synthase/dihydrofolate synthas;	100.0
1w78_A	422	FOLC bifunctional protein; DHFS, dihydrofolate syn	100.0
3mvn_A	163	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M	99.32
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.84
3fwy_A	314	Light-independent protochlorophyllide reductase I	93.52
2g0t_A	350	Conserved hypothetical protein; structural genomic	93.1
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	92.59
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	91.99
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	91.89
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	91.18
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	91.06
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	90.04
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	90.04
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	89.55
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	89.42
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	89.29
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	89.13
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	89.03
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	88.89
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	88.31
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	88.01
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	87.62
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	87.51
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	87.13
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	86.67
3cwq_A	209	Para family chromosome partitioning protein; alpha	86.61
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	86.52
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	86.17
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	85.83
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	85.81
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	84.86
3end_A	307	Light-independent protochlorophyllide reductase ir	84.13
2obn_A	349	Hypothetical protein; structural genomics, joint c	83.49
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	83.46
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	82.97
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	82.61
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	82.22
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	81.97
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	81.78
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	81.29
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	81.05
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	81.05
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	80.49

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=100.00  E-value=8.7e-61  Score=472.31  Aligned_cols=315  Identities=23%  Similarity=0.356  Sum_probs=267.8

Q ss_pred             eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhh
Q 017957            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL   82 (363)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~   82 (363)
                      =++|+||+++++||++++|+++|+|+++++|++++..  +.++|+||||||||||++||+++|++.|.++.+.||+|.|+
T Consensus        74 d~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~--~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~~~  151 (451)
T 3lk7_A           74 CYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVS--ESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFPA  151 (451)
T ss_dssp             EEEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHC--CSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSCH
T ss_pred             CEEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeecChhh
Confidence            3689999999999999999999999999999999987  45999999999999999999999999999999999999998


Q ss_pred             hhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEe
Q 017957           83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP  162 (363)
Q Consensus        83 ~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n  162 (363)
                      +....       ...+.|++|+|+|+++++.++. ++|+++|||||++||+|+|||+|+|+++|++|++.+++++.+|+|
T Consensus       152 ~~~~~-------~~~~~d~~VlE~~s~~l~~~~~-~~p~iaviTNI~~DHld~~gt~e~i~~aK~~i~~~~~~~~~~V~n  223 (451)
T 3lk7_A          152 SEVVQ-------AANDKDTLVMELSSFQLMGVKE-FRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLN  223 (451)
T ss_dssp             HHHTT-------TCCTTCEEEEECCHHHHTTCSS-CCCSEEEECCCCSCCHHHHSSHHHHHHHHHGGGTTCCTTSEEEEE
T ss_pred             hhhhh-------cCCCCCEEEEECCccccccccc-cCCCEEEEcCCChhHhhhcCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence            76542       1346799999999999887665 899999999999999999999999999999999999889999999


Q ss_pred             CCChhHHHHHhcCCccEEEeccCCCc-eeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCC
Q 017957          163 FGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD  241 (363)
Q Consensus       163 ~dd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~  241 (363)
                      .|||....+......++++||.+.+. .....  ...+.+  .+. ..+....++++|.||++|+++|+  +++..+|++
T Consensus       224 ~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~--~~~-~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~  296 (451)
T 3lk7_A          224 FNQGISKELAKTTKATIVPFSTTEKVDGAYVQ--DKQLFY--KGE-NIMSVDDIGVPGSHNVENALATI--AVAKLAGIS  296 (451)
T ss_dssp             TTSHHHHHHHTTCSSEEEEEESSSCCSSEEEE--TTEEEE--TTE-EEEEGGGSSSCSHHHHHHHHHHH--HHHHHHTCC
T ss_pred             CCcHHHHHHHhhcCCeEEEEccCCCcCCEEEE--CCEEEE--CCc-EEeeccccCCCcHHHHHHHHHHH--HHHHHcCCC
Confidence            99999988887677788899875322 00000  112222  221 22234689999999999999999  899999999


Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhhc
Q 017957          242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL  321 (363)
Q Consensus       242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l  321 (363)
                      +++|+++|++|+++|||||++. ..+++++|||+|||||+|+.++++.++++|+++|+|++.+.      .+++++.+.+
T Consensus       297 ~~~i~~~L~~f~~~~gR~e~v~-~~~g~~vi~D~~a~np~a~~~al~~~~~~rii~I~g~~~r~------~d~~~l~~~l  369 (451)
T 3lk7_A          297 NQVIRETLSNFGGVKHRLQSLG-KVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDRG------NEFDELIPDI  369 (451)
T ss_dssp             HHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHHTSCGGGEEEEECCSCCS------CCCGGGHHHH
T ss_pred             HHHHHHHHHhCCCCCCcEEEEe-eeCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEEEECCCCCC------CCHHHHHHHH
Confidence            9999999999999999999996 46889999999999999999999999755689999877653      2467788887


Q ss_pred             ccCcEEEEEcccchHHHHhhC
Q 017957          322 NHHRCVITVCALLFLKIVIQF  342 (363)
Q Consensus       322 ~~~~~vi~~G~~~~~~~~~~~  342 (363)
                      +++|.+|++|+.+ ..+.+.+
T Consensus       370 ~~~d~vi~~G~~~-~~l~~~~  389 (451)
T 3lk7_A          370 TGLKHMVVLGESA-SRVKRAA  389 (451)
T ss_dssp             TTCSEEEECSTTH-HHHHHHH
T ss_pred             HhcCEEEEECCCH-HHHHHHH
Confidence            7799999999886 5666655

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=100.00  E-value=9.3e-57  Score=442.22  Aligned_cols=307  Identities=26%  Similarity=0.384  Sum_probs=256.4

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~   83 (363)
                      ++|.+|++++++|++..|++++++++++++++++..  +.++|+||||||||||++||+++|++.|++++++||+|.|++
T Consensus        67 ~vV~s~gi~~~~p~~~~a~~~~~~v~~~~~~~~~~~--~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gnig~~~~  144 (439)
T 2x5o_A           67 LIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPAL  144 (439)
T ss_dssp             EEEECTTSCTTCHHHHHHHHTTCEEECHHHHHHHHC--CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESSSBCHH
T ss_pred             EEEeCCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEecccCHHHH
Confidence            689999999999999999999999999999999986  589999999999999999999999999999999999999997


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEEEe
Q 017957           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLP  162 (363)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v~n  162 (363)
                      ...         ..+.|++|+|+|+++++.++. ++|+++|||||++||+|+| +|+|+|+++|++|++.   ++.+|+|
T Consensus       145 ~~~---------~~~~d~~VlE~~~~~l~~~~~-~~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~---~~~~V~n  211 (439)
T 2x5o_A          145 MLL---------DDECELYVLELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVN  211 (439)
T ss_dssp             HHC---------CTTCCEEEEECCHHHHHTCCC-CCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTT---CSEEEEE
T ss_pred             HHh---------CCCCCEEEEECCchhhccccc-CCCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcC---CCEEEEe
Confidence            653         124589999999999998766 8999999999999999999 7999999999999984   6899999


Q ss_pred             CCChhHHHHHhcCCccEEEeccCCC-ce-eccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCC
Q 017957          163 FGNQHLNEAIKGHRFNLAWIGAFPG-VK-IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV  240 (363)
Q Consensus       163 ~dd~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi  240 (363)
                      .|||....+... ..++++||.+.. +. +...  ...+.+. .+. ..+....++++|.||++|+++|+  +++..+|+
T Consensus       212 ~dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~--~~~~~~~-~~~-~~~~~~~l~l~G~hn~~NalaA~--a~~~~lgi  284 (439)
T 2x5o_A          212 ADDALTMPIRGA-DERCVSFGVNMGDYHLNHQQ--GETWLRV-KGE-KVLNVKEMKLSGQHNYTNALAAL--ALADAAGL  284 (439)
T ss_dssp             TTCGGGSCSCCC-SSCCEEECSSSSSEEEEEET--TEEEEEE-TTE-EEEEGGGCSCCSHHHHHHHHHHH--HHHHHTTC
T ss_pred             CCCHHHHHHhhc-CCcEEEEeCCCcCcCcEEEE--CCEEEEe-CCc-EEEeehhcCCCCHHHHHHHHHHH--HHHHHcCC
Confidence            999987665443 457788886421 11 1111  1122221 121 11223578999999999999999  89999999


Q ss_pred             CHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccC-CcEEEEEcCCCCCCCCCCccchhhhhh
Q 017957          241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLIE  319 (363)
Q Consensus       241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~-~~~i~IlG~~~~~g~~~~~~~~~~l~~  319 (363)
                      ++++|+++|++|+++|||||++. ..+++++|||+|||||+|++++++.++. +|+++|+|+|++.++      ++++.+
T Consensus       285 ~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~vi~Ds~a~np~a~~~al~~l~~~~~~i~v~g~~~k~~~------~~~~~~  357 (439)
T 2x5o_A          285 PRASSLKALTTFTGLPHRFEVVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSAD------FSPLAR  357 (439)
T ss_dssp             CHHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHTTCCCSSCEEEEEESBCTTCC------CGGGGG
T ss_pred             CHHHHHHHHHhCCCCCCceEEEE-EECCEEEEEeCCCCCHHHHHHHHHhCCcCCCEEEEEcCCCCCCC------HHHHHH
Confidence            99999999999999999999996 4678999999999999999999999973 689999999877654      456888


Q ss_pred             hccc-CcEEEEEcccchHHHHh
Q 017957          320 PLNH-HRCVITVCALLFLKIVI  340 (363)
Q Consensus       320 ~l~~-~~~vi~~G~~~~~~~~~  340 (363)
                      .++. +|.+|++|+.. ..+.+
T Consensus       358 ~l~~~~d~vi~~g~~~-~~~~~  378 (439)
T 2x5o_A          358 YLNGDNVRLYCFGRDG-AQLAA  378 (439)
T ss_dssp             GSCSSSEEEEEESTTH-HHHHT
T ss_pred             HHHhhCCEEEEECCCH-HHHHH
Confidence            7765 89999999886 45555

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=100.00  E-value=1.5e-54  Score=434.69  Aligned_cols=319  Identities=19%  Similarity=0.203  Sum_probs=239.2

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeE-ee-------
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-VG-------   75 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~-~~-------   75 (363)
                      ++|+||+++++||++++|+++|+|+++++|++++...+..++|+||||||||||++||++||+++|.++. ..       
T Consensus        83 ~vV~Spgi~~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~iGg~~~~~  162 (524)
T 3hn7_A           83 LVVVGNAMKRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVN  162 (524)
T ss_dssp             EEEECTTCCTTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBCCC
T ss_pred             EEEECCCcCCCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCEeccc
Confidence            6899999999999999999999999999999988532456899999999999999999999999998764 22       


Q ss_pred             -------cccchhhhhhhhhcccCCCCCCCCcEEEEEeCccccccc---Cc--cccccEEEEeCCChhhhccCCCHHHHH
Q 017957           76 -------GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP---NK--YFCPTVSVVLNLTPDHLERHKTMKNYA  143 (363)
Q Consensus        76 -------gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~---~~--~~~p~i~viTnI~~dHl~~~gt~e~~~  143 (363)
                             +++|.|.......  .....+.++|++|+|+|+++....   ..  .++|+++|||||++||+|+|||+|+|+
T Consensus       163 ~T~~nln~~ig~~~~~~~~~--~~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~gs~e~y~  240 (524)
T 3hn7_A          163 TTDTNLQQVFAHSSYLGTEK--DDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAIQ  240 (524)
T ss_dssp             SSCHHHHHHTTSSEECCCCC--CSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC------CHHHHH
T ss_pred             cCchhhhhhhhhHHhhCCCc--ccccccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccCCHHHHH
Confidence                   2344443210000  000002346899999999875532   11  279999999999999999999999999


Q ss_pred             HHHHHhcccCCCCcEEEEeCCChhHHHHHhc-CCccEEEeccC----------------------CCceecc-ccccceE
Q 017957          144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAF----------------------PGVKIDT-EAKTASF  199 (363)
Q Consensus       144 ~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~-~~~~~~~  199 (363)
                      ++|.++++.+++++.+|+|.|||.+..+... ...++++||..                      .++.... ...+..|
T Consensus       241 ~aK~~i~~~~~~~g~~VlN~DD~~~~~~~~~~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~~f  320 (524)
T 3hn7_A          241 TQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQF  320 (524)
T ss_dssp             HHHHHHHTTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEEEEEC-------------------CCCSEEEEEEETTTTEE
T ss_pred             HHHHHHHHhCCCCCEEEEECCCHHHHHHHHhccCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCceEE
Confidence            9999999999889999999999999887643 34577888853                      1121100 0112334


Q ss_pred             EEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCC
Q 017957          200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN  279 (363)
Q Consensus       200 ~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~n  279 (363)
                      .+...+....+..+.++++|.||++|+++|+  +++..+|+++++|+++|++|+++|||||++. ..+++++|+|+ +||
T Consensus       321 ~l~~~~~~~~~~~~~l~l~G~hn~~NalaA~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~g~~vi~D~-ahn  396 (524)
T 3hn7_A          321 TVSFNDNKEATALVNWSMSGLHNVNNALVAI--AAAYNIGVSVKTACAALSAFAGIKRRMELIG-DVNDILVFDDF-AHH  396 (524)
T ss_dssp             EEEETTEEEEEEEEECSCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHTCCCBTTSSEEEE-EETTEEEEEEC-CCS
T ss_pred             EEEECCccceeEEEEeCCCcHHHHHhHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCceEEEEE-ecCCcEEEEEC-CCC
Confidence            4433332211234589999999999999999  8999999999999999999999999999996 46789999997 899


Q ss_pred             HHHHHHHHhccc----CCcEEEEEcCC---CCCCCCCCccchhhhhhhcccCcEEEEEccc
Q 017957          280 LEATCTGLMDLK----GHKCVILLGGQ---AKVLNGQESNGFEKLIEPLNHHRCVITVCAL  333 (363)
Q Consensus       280 p~s~~~al~~~~----~~~~i~IlG~~---~~~g~~~~~~~~~~l~~~l~~~~~vi~~G~~  333 (363)
                      |++++++++.++    ++|+++|+|++   .++++.     ...+...++.+|.+|++|+.
T Consensus       397 p~~~~a~l~~l~~~~~~~r~i~V~g~~~~~~~~g~~-----~~~~~~~~~~aD~vil~~~~  452 (524)
T 3hn7_A          397 PTAITTTLDGAKKKLADRRLWAIIEPRSNTMKMGIH-----QDSLAQSATLADHTLWYEPT  452 (524)
T ss_dssp             HHHHHHHHHHHHHHHTTSCEEEEEECCCCSSCCSCC-----TTHHHHHTTTSSEEEEECCT
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEEECCCCcchhhhhh-----HHHHHHHHhcCCEEEEcCCC
Confidence            999999988773    46899999986   344442     33455556679999999975

>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=1.6e-54  Score=427.79  Aligned_cols=320  Identities=19%  Similarity=0.245  Sum_probs=239.2

Q ss_pred             eeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc----cch
Q 017957            5 WLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGN   80 (363)
Q Consensus         5 ~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn----ig~   80 (363)
                      +|.++.++++.|.+.  +++..+++++++..++.. .+.++|+||||||||||++||+++|++.|.+..+.||    +|.
T Consensus        65 vv~~~~~~~~~p~i~--v~~~~~~l~~la~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~t~g~~n~~ig~  141 (452)
T 1gg4_A           65 LLVSRPLDIDLPQLI--VKDTRLAFGELAAWVRQQ-VPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGV  141 (452)
T ss_dssp             EEESSCCSCSSCEEE--ESCHHHHHHHHHHHHHHH-SCCEEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCSTTHH
T ss_pred             EEECCCcCCCCCEEE--ECCHHHHHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeeccccccCCcch
Confidence            456666554555443  344455666777666543 2678999999999999999999999999976677777    677


Q ss_pred             hhhhhhhhcccCCCCCCCCcEEEEEeCcc-ccc--ccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCc
Q 017957           81 PLSEAAFHCIALPSSKPKFQVAVVEVSSY-QME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK  157 (363)
Q Consensus        81 p~~~~~~~~~~~~~~~~~~d~~VlE~g~~-~l~--~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~  157 (363)
                      |.+...        ...++|++|+|+|++ .++  .....++|+++|||||++||+|+|||+|+|+++|++|++.+++++
T Consensus       142 p~t~~~--------~~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNI~~DHld~~gt~e~~~~aK~~i~~~~~~~~  213 (452)
T 1gg4_A          142 PMTLLR--------LTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENG  213 (452)
T ss_dssp             HHHHTT--------CCTTCSEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGCCTTC
T ss_pred             hHHHHc--------CCCCCcEEEEEeCCCCcchHHHHhCccCCCEEEECCCChHHhhhcCCHHHHHHHHHHHHhhcccCC
Confidence            765432        245789999999964 444  233347999999999999999999999999999999999988889


Q ss_pred             EEEEeCCChhHHHHHh-cCCccEEEeccCC---Cceec---cccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHH
Q 017957          158 LGLLPFGNQHLNEAIK-GHRFNLAWIGAFP---GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA  230 (363)
Q Consensus       158 ~~v~n~dd~~~~~~~~-~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~  230 (363)
                      .+|+|.|||....+.+ ....++++||.+.   ++...   ....+..+.+...+...   .+.++++|.||++|+++|+
T Consensus       214 ~~V~n~dd~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~---~~~l~l~G~hn~~NalaA~  290 (452)
T 1gg4_A          214 IAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSV---DVLLPLPGRHNIANALAAA  290 (452)
T ss_dssp             EEEEETTBCCHHHHHHHHTTSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEE---EEEECSSSTHHHHHHHHHH
T ss_pred             EEEEeCCcHHHHHHHHhhcCCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEECCCEE---EEEeCCCcHHHHHHHHHHH
Confidence            9999999998877632 1145788898642   23221   11112234333222222   2578999999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc--CCcEEEEEcCCCCCCCC
Q 017957          231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVLNG  308 (363)
Q Consensus       231 ~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~IlG~~~~~g~~  308 (363)
                        +++..+|+++++|+++|++|+++|||||++. ..+++++|||+|||||+|++++++.++  ++|+++|+|+|.|+|+.
T Consensus       291 --a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~vidDsyahnp~s~~~~l~~l~~~~~~~i~V~G~~~e~g~~  367 (452)
T 1gg4_A          291 --ALSMSVGATLDAIKAGLANLKAVPGRLFPIQ-LAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAE  367 (452)
T ss_dssp             --HHHHHTTCCHHHHHHHHTTCCCCTTSSEEEE-EETTEEEEECCSCCCHHHHHHHHHHHHHSSSEEEEEECCCCCCTTH
T ss_pred             --HHHHHcCCCHHHHHHHHHhCCCCCCCceEEE-CCCCcEEEEeCCCCCHHHHHHHHHHHHhccCCEEEEECCccccCCh
Confidence              8999999999999999999999999999996 456899999999999999999999885  25889999999999987


Q ss_pred             CCccchhhhhhhcc--cCcEEEEEcccchHHHHhhCC
Q 017957          309 QESNGFEKLIEPLN--HHRCVITVCALLFLKIVIQFP  343 (363)
Q Consensus       309 ~~~~~~~~l~~~l~--~~~~vi~~G~~~~~~~~~~~~  343 (363)
                      +. ..|+++++.++  .+|.+|++|+.. ..+.+.+.
T Consensus       368 ~~-~~~~~~~~~~~~~~~d~vi~~g~~~-~~i~~~~~  402 (452)
T 1gg4_A          368 SE-ACHVQVGEAAKAAGIDRVLSVGKQS-HAISTASG  402 (452)
T ss_dssp             HH-HHHHHHHHHHHHHTCSEEEEESSST-HHHHHHTT
T ss_pred             hH-HHHHHHHHHHHHcCCCEEEEECcCH-HHHHHHhh
Confidence            63 46788999775  489999999987 57777653

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=100.00  E-value=8.1e-54  Score=426.63  Aligned_cols=306  Identities=16%  Similarity=0.232  Sum_probs=240.3

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCC-eEeecccchhh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-AFVGGNLGNPL   82 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~-~~~~gnig~p~   82 (363)
                      ++|+||+++++||++++|+++|+|+++++|++++.+ +..++|+||||||||||++||+++|+.+|.+ +...|+++.++
T Consensus        84 ~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg~~~~~  162 (494)
T 4hv4_A           84 VVVVSTAISADNPEIVAAREARIPVIRRAEMLAELM-RYRHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLVKAA  162 (494)
T ss_dssp             EEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEEEETTT
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCCEEcHHHHHHHHh-cCCCEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCccccc
Confidence            689999999999999999999999999999999887 4567999999999999999999999999975 34434333333


Q ss_pred             hhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEEE
Q 017957           83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLL  161 (363)
Q Consensus        83 ~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v~  161 (363)
                      .....        ..+.|++|+|+|++....  ..++|+++|||||++||+|+| +|+|+|+++|.+|++.+++++.+|+
T Consensus       163 g~~~~--------~~~~d~~VlE~~e~~~s~--~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~~V~  232 (494)
T 4hv4_A          163 GTHAR--------LGSSRYLIAEADESDASF--LHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVM  232 (494)
T ss_dssp             TEEEE--------CCSSSEEEEECCCGGGGG--GGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCEEEE
T ss_pred             ccccc--------cCCCcEEEEEcccccccc--ccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCEEEE
Confidence            21111        235789999999654322  248999999999999999999 7999999999999999888999999


Q ss_pred             eCCChhHHHHHhcCCccEEEeccCC--Cceec---cccccceEEEecCCe-EEEEEeeccCCCchhHHHHHHHHHHHHHH
Q 017957          162 PFGNQHLNEAIKGHRFNLAWIGAFP--GVKID---TEAKTASFEVPAVGV-VSQLQLHNMKVMGRHNYHNAAVAALSVLG  235 (363)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~l~l~G~h~~~Nal~A~~~a~~  235 (363)
                      |.|||....+......++++||...  ++...   .+.....|.+...+. ..   .+.++++|+||++|+++|+  +++
T Consensus       233 n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a  307 (494)
T 4hv4_A          233 CIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLI---EVTLNAPGRHNALNAAAAV--AVA  307 (494)
T ss_dssp             ETTSHHHHHHGGGCCSCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCE---EEEESSCSHHHHHHHHHHH--HHH
T ss_pred             ECCCHHHHHHHHhcCCCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCceEE---EEEecCCcHHHHHHHHHHH--HHH
Confidence            9999999988876667888998643  22221   111122333332221 11   2478999999999999999  899


Q ss_pred             HHcCCCHHHHHHHhhcCCCCCCeeEEEEeec---------CCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCC
Q 017957          236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDI---------QGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQ  302 (363)
Q Consensus       236 ~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~---------~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~  302 (363)
                      ..+|+++++|+++|++|+++|||||++. ..         +++++||| |||||++++++++.++    ++|+++|+|++
T Consensus       308 ~~lgi~~~~i~~~L~~f~g~~~R~e~v~-~~~~~~~~~~~~g~~vi~D-yaHnp~~i~a~l~al~~~~~~~rii~V~g~~  385 (494)
T 4hv4_A          308 TEEGIEDEDILRALVGFQGTGRRFDFLG-NFPLAPVNGKEGSAMLVDD-YGHHPTEVDATIKAARAGWPDKRIVMLFQPH  385 (494)
T ss_dssp             HHHTCCHHHHHHHHHHCCCBTTSSEEEE-EEESHHHHSCSSEEEEEEE-CCCSHHHHHHHHHHHHHHCTTSEEEEEECCB
T ss_pred             HHcCCCHHHHHHHHHhCCCCCCccEEee-eccccccccCCCCeEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEEcCC
Confidence            9999999999999999999999999996 33         48999999 5999999999888763    45788999864


Q ss_pred             CCCCCCCCccchhhhhhhcccCcEEEEE
Q 017957          303 AKVLNGQESNGFEKLIEPLNHHRCVITV  330 (363)
Q Consensus       303 ~~~g~~~~~~~~~~l~~~l~~~~~vi~~  330 (363)
                      .....   +..+.++++.+..+|.+|++
T Consensus       386 ~~~r~---k~~~~~~~~~~~~aD~vilt  410 (494)
T 4hv4_A          386 RYTRT---RDLYDDFANVLSQVDVLLML  410 (494)
T ss_dssp             CHHHH---HHTHHHHHHHHTTSSEEEEE
T ss_pred             CCCch---HHHHHHHHHHHhcCCEEEEe
Confidence            32110   11245666667779999986

>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*

Probab=100.00  E-value=1.1e-54  Score=429.37  Aligned_cols=313  Identities=18%  Similarity=0.170  Sum_probs=242.7

Q ss_pred             eeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc----cch
Q 017957            5 WLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGN   80 (363)
Q Consensus         5 ~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn----ig~   80 (363)
                      +|.++.++ +.|.+.  +++..+++++++..++..+ +.++|+||||||||||++||+++|++.|.++.+.||    +|.
T Consensus        66 vv~~~~~~-~~p~i~--v~~~~~al~~la~~~~~~~-~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~s~g~~n~~ig~  141 (454)
T 2am1_A           66 TLSEKEVS-NHPYIL--VDDVLTAFQSLASYYLEKT-TVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGL  141 (454)
T ss_dssp             EEESSCCC-SSCEEE--CSCHHHHHHHHHHHHHHHH-CCEEEEEECCCSSSCHHHHHHHHHTTTSCEEECCTTCCSTTHH
T ss_pred             EEECCCCC-CCCEEE--ECCHHHHHHHHHHHHhhCC-CCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeecCCccCcccch
Confidence            45566554 555443  3444556667776665432 578999999999999999999999999987778888    677


Q ss_pred             hhhhhhhhcccCCCCCCCCcEEEEEeCccc-cc--ccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCc
Q 017957           81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQ-ME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK  157 (363)
Q Consensus        81 p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~-l~--~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~  157 (363)
                      |.+....        ..++|++|+|+|+++ ++  .....++|+++|||||++||+|+|||+|+|+++|++|++.+++++
T Consensus       142 p~t~~~~--------~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNi~~DHld~~gt~e~~a~aK~~i~~~~~~~~  213 (454)
T 2am1_A          142 PYTVLHM--------PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGS  213 (454)
T ss_dssp             HHHHHTC--------CTTCCEEEEECCCSSTTHHHHHHHHHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTCCTTC
T ss_pred             HHHHhcC--------CCCCcEEEEEcCCCCcchHHHHhCccCCCEEEEcCCchHhhhhcCCHHHHHHHHHHHHhhcccCC
Confidence            7654432        457899999999753 33  123347999999999999999999999999999999999988889


Q ss_pred             EEEEeCCChhHHHHHhcCCccEEEeccCCCcee---ccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHH
Q 017957          158 LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (363)
Q Consensus       158 ~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~  234 (363)
                      .+|+|.|| ....+... ..++++||.+.+.++   .....+..+.+...+.     .+.++++|.||++|+++|+  ++
T Consensus       214 ~~V~n~dd-~~~~~~~~-~~~~~~~g~~~~~d~~~i~~~~~~~~~~~~~~~~-----~~~l~l~G~hn~~NalaA~--a~  284 (454)
T 2am1_A          214 LLLAPADP-IVEDYLPI-DKKVVRFGQGAELEITDLVERKDSLTFKANFLEQ-----ALDLPVTGKYNATNAMIAS--YV  284 (454)
T ss_dssp             EEEEESCG-GGGGGCCS-SSEEEEESTTSSBCEEEEEECSSCEEEEETTCSS-----EEEESSCCHHHHHHHHHHH--HH
T ss_pred             EEEEEcHH-HHHHHHhc-CCcEEEEeCCCCCceeeeEEeCCceEEEEEecCc-----EEEecCCCHHHHHHHHHHH--HH
Confidence            99999998 76655544 457888986432111   0011112233321111     2478999999999999999  88


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc---C---CcEEEEEcCCCCCCCC
Q 017957          235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---G---HKCVILLGGQAKVLNG  308 (363)
Q Consensus       235 ~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~---~~~i~IlG~~~~~g~~  308 (363)
                      +..+|+++++|+++|++|+++|||||++. ..+++++|||+|||||+|++++++.++   +   +|+++|+|+|.+.|+.
T Consensus       285 ~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~iiDDsyahnp~s~~~~l~~l~~~~~~~~~~~i~V~G~~~e~G~~  363 (454)
T 2am1_A          285 ALQEGVSEEQIRLAFQHLELTRNRTEWKK-AANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQ  363 (454)
T ss_dssp             HHHTTCCHHHHHHHGGGCCCCCCCSCEEC-CTTTCEEEEECSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEECCCCCCTT
T ss_pred             HHHcCCCHHHHHHHHHhCCCccCCeeEEE-CCCCeEEEEeCCCCCHHHHHHHHHHHHhcccccCCCEEEEECCchhcCcH
Confidence            99999999999999999999999999996 346788999999999999999999875   2   6899999999999887


Q ss_pred             CCccchhhhhhhccc--CcEEEEEcccchHHHHhh
Q 017957          309 QESNGFEKLIEPLNH--HRCVITVCALLFLKIVIQ  341 (363)
Q Consensus       309 ~~~~~~~~l~~~l~~--~~~vi~~G~~~~~~~~~~  341 (363)
                      + ...|+++++.+..  +|.+|++|+.. ..+.+.
T Consensus       364 ~-~~~~~~~~~~~~~~~~d~vi~~g~~~-~~i~~~  396 (454)
T 2am1_A          364 S-VQLHNQMILSLSPDVLDIVIFYGEDI-AQLAQL  396 (454)
T ss_dssp             H-HHHHHHGGGGCCTTTCSEEEEEESTT-HHHHHH
T ss_pred             H-HHHHHHHHHHHHhcCCCEEEEECcCH-HHHHHH
Confidence            6 3568889998863  89999999986 555553

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=100.00  E-value=9.4e-52  Score=410.45  Aligned_cols=305  Identities=17%  Similarity=0.207  Sum_probs=240.7

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCC-e-Eeecccchh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-A-FVGGNLGNP   81 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~-~-~~~gnig~p   81 (363)
                      ++|.+|+++++||++++|+++++|++++.+.+++.. +..++|+||||||||||++||+++|+++|++ + .++||++.+
T Consensus        80 ~vv~s~~i~~~~~~~~~a~~~~i~vl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~~  158 (475)
T 1p3d_A           80 VVVVSSAIKDDNPELVTSKQKRIPVIQRAQMLAEIM-RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSA  158 (475)
T ss_dssp             EEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTT
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHh-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCccccc
Confidence            689999999999999999999999999999988876 3568999999999999999999999999986 3 356776532


Q ss_pred             hhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEE
Q 017957           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGL  160 (363)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v  160 (363)
                      -...         ...+.|++|+|+|+.+.  ....++|+++|||||++||+|+| +|+|+|+++|.+++..+++++.+|
T Consensus       159 ~~~~---------~~~~~d~~VlE~~~~~~--~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~V  227 (475)
T 1p3d_A          159 GKNA---------HLGASRYLIAEADESDA--SFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAV  227 (475)
T ss_dssp             TEEE---------ECCSSSEEEEECCCTTS--GGGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred             cccc---------ccCCCCEEEEEecCCcC--ccccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            2111         12457899999996543  33347999999999999999999 799999999999999988899999


Q ss_pred             EeCCChhHHHHHhcCCccEEEeccCCC--ceec---cccccceEEEecCC-eEEEEEeeccCCCchhHHHHHHHHHHHHH
Q 017957          161 LPFGNQHLNEAIKGHRFNLAWIGAFPG--VKID---TEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (363)
Q Consensus       161 ~n~dd~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~-~~~~~~~~~l~l~G~h~~~Nal~A~~~a~  234 (363)
                      +|.|||....+......++++||...+  +...   .+..+..|.+...+ ...   .+.++++|+||++|+++|+  ++
T Consensus       228 ~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a~  302 (475)
T 1p3d_A          228 MCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERI---NVLLNVPGKHNALNATAAL--AV  302 (475)
T ss_dssp             EETTCHHHHHHHHHHCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEE---EEEESSCSHHHHHHHHHHH--HH
T ss_pred             EECCCHHHHHHHHhcCCCEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCeEE---EEEEcCccHHHHHHHHHHH--HH
Confidence            999999988777655567888986432  2211   11112234432222 111   2478999999999999999  89


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCeeEEEEeec----CCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCCCCCC
Q 017957          235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDI----QGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVL  306 (363)
Q Consensus       235 ~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~----~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~~~~g  306 (363)
                      +..+|+++++|+++|++|+++|||||++. ..    +++++|+| |||||++++++++.++    ++|+++|+|++....
T Consensus       303 ~~~lgi~~~~i~~~L~~f~~~~gR~e~v~-~~~~~~~~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~~~~~r  380 (475)
T 1p3d_A          303 AKEEGIANEAILEALADFQGAGRRFDQLG-EFIRPNGKVRLVDD-YGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSR  380 (475)
T ss_dssp             HHHTTCCHHHHHHHHHTCCCBTTSSEEEE-EEEETTEEEEEEEE-CCCSHHHHHHHHHHHHHHHCSSCEEEEECCBCHHH
T ss_pred             HHHcCCCHHHHHHHHHhCCCCCCCCEEEe-cccccCCCcEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECCCCCcc
Confidence            99999999999999999999999999996 33    37899999 6999999999988764    367889998753211


Q ss_pred             CCCCccchhhhhhhcccCcEEEEE
Q 017957          307 NGQESNGFEKLIEPLNHHRCVITV  330 (363)
Q Consensus       307 ~~~~~~~~~~l~~~l~~~~~vi~~  330 (363)
                      +   +..+.++++.++.+|.+|++
T Consensus       381 ~---~~~~~~~~~~~~~~d~vi~t  401 (475)
T 1p3d_A          381 T---RDLFDDFVQVLSQVDALIML  401 (475)
T ss_dssp             H---HHTHHHHHHHHTTSSEEEEE
T ss_pred             H---HHHHHHHHHHHHhCCEEEEc
Confidence            1   12367788877778999985

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=100.00  E-value=3.2e-51  Score=408.12  Aligned_cols=305  Identities=16%  Similarity=0.219  Sum_probs=240.7

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCC-e-Eeecccchh
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-A-FVGGNLGNP   81 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~-~-~~~gnig~p   81 (363)
                      ++|.+++++++||++++|+++++|++++.+.+++.. +..++|+||||||||||++||+++|+++|++ + .++||++.+
T Consensus        81 ~vv~s~~i~~~~p~~~~a~~~~ipvl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~~  159 (491)
T 2f00_A           81 VVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELM-RFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAA  159 (491)
T ss_dssp             EEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTT
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCeeccc
Confidence            589999999999999999999999999999998877 3568999999999999999999999999986 3 356776532


Q ss_pred             hhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEE
Q 017957           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGL  160 (363)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v  160 (363)
                      -....         ..+.|++|+|+|+.+.  ....++|+++|||||++||+|+| +|+|+|+++|.+++..+++++.+|
T Consensus       160 ~~~~~---------~~~~d~~VlE~~~~~~--~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~V  228 (491)
T 2f00_A          160 GVHAR---------LGHGRYLIAEADESDA--SFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAV  228 (491)
T ss_dssp             TEEEE---------CCSSSEEEEECCCTTS--GGGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred             ccccc---------CCCCCEEEEEeCCCcc--chhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhCCCCCEEE
Confidence            21111         2457899999996543  33347999999999999999999 799999999999999988899999


Q ss_pred             EeCCChhHHHHHhcCCccEEEeccCCC--ceec---cccccceEEEecCC-eEEEEEeeccCCCchhHHHHHHHHHHHHH
Q 017957          161 LPFGNQHLNEAIKGHRFNLAWIGAFPG--VKID---TEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (363)
Q Consensus       161 ~n~dd~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~-~~~~~~~~~l~l~G~h~~~Nal~A~~~a~  234 (363)
                      +|.|||....+......++++||...+  +...   .+..+..|.+...+ ...   .+.++++|.||++|+++|+  ++
T Consensus       229 ~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a~  303 (491)
T 2f00_A          229 MCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPM---RVTLNAPGRHNALNAAAAV--AV  303 (491)
T ss_dssp             EETTSHHHHHHGGGCCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCE---EEEESSCSHHHHHHHHHHH--HH
T ss_pred             EECCCHHHHHHHHhcCCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCceEE---EEEEccchHHHHHHHHHHH--HH
Confidence            999999988887665667889986432  2211   11112234332212 111   2478999999999999999  88


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCeeEEEEeec--------CC-EEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcC
Q 017957          235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDI--------QG-VTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG  301 (363)
Q Consensus       235 ~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~--------~~-~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~  301 (363)
                      +..+|++++.|+++|++|+++|||||++. ..        ++ +++|+| |||||++++++++.++    ++|+++|+|+
T Consensus       304 a~~lgi~~~~i~~~L~~f~~~~gR~e~v~-~~~~~~~~~~~g~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~  381 (491)
T 2f00_A          304 ATEEGIDDEAILRALESFQGTGRRFDFLG-EFPLEPVNGKSGTAMLVDD-YGHHPTEVDATIKAARAGWPDKNLVMLFQP  381 (491)
T ss_dssp             HHHHTCCHHHHHHHHHTCCCBTTSSEEEE-EEESSSSSSCSSEEEEEEE-CCCSHHHHHHHHHHHHTTCCSSEEEEEECC
T ss_pred             HHHcCCCHHHHHHHHHhCCCCCCCCEEEc-cccccccccCCCcEEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECC
Confidence            99999999999999999999999999996 32        37 899999 5999999999988764    2578888886


Q ss_pred             CCCCCCCCCccchhhhhhhcccCcEEEEE
Q 017957          302 QAKVLNGQESNGFEKLIEPLNHHRCVITV  330 (363)
Q Consensus       302 ~~~~g~~~~~~~~~~l~~~l~~~~~vi~~  330 (363)
                      +....+   +..+.++++.++.+|.+|++
T Consensus       382 ~~~~r~---k~~~~~~~~~~~~~d~vilt  407 (491)
T 2f00_A          382 HRFTRT---RDLYDDFANVLTQVDTLLML  407 (491)
T ss_dssp             BCHHHH---TTTHHHHHHHHTTSSEEEEC
T ss_pred             CCCcch---HHHHHHHHHHHHhCCEEEEc
Confidence            532111   12367888877778999885

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=1.2e-49  Score=394.42  Aligned_cols=295  Identities=18%  Similarity=0.167  Sum_probs=225.6

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCC--CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeE--eecccc
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPR--SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNLG   79 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~--~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~--~~gnig   79 (363)
                      ++|.||+++++||++++|+++|+|+++++|++++.. +  +.++|+||||||||||++||+++|+++|++++  +.|+++
T Consensus        74 ~vV~spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~  152 (469)
T 1j6u_A           74 LVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTL-KREKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMD  152 (469)
T ss_dssp             EEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HHHCCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCT
T ss_pred             EEEECCCcCCCCHHHHHHHHcCCcEEEHHHHHHHHH-hccCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeec
Confidence            689999999999999999999999999999998876 3  47899999999999999999999999998853  556643


Q ss_pred             hhh-hhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCC-HHHHHHHHHHhcccCCCCc
Q 017957           80 NPL-SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTK  157 (363)
Q Consensus        80 ~p~-~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt-~e~~~~~K~~i~~~~~~~~  157 (363)
                      ..- ....+         .+.| +|+|+|+++.  +...++|+++|||||++||+|+||| +|+|+++|.++++.++   
T Consensus       153 ~~g~~~~~~---------~~~~-~V~E~~~~~~--~~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~---  217 (469)
T 1j6u_A          153 SLEHGNYEK---------GNGP-VVYELDESEE--FFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTD---  217 (469)
T ss_dssp             TSTTSSEEC---------CSSC-EEEEECTTSG--GGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCS---
T ss_pred             ccCcccccc---------CCCC-EEEECCCccC--ccccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCC---
Confidence            311 11111         2356 9999998863  3334799999999999999999997 9999999999988643   


Q ss_pred             EEEEeCCChhHHHHHhcCCccEEEeccCC-Ccee--cccccc-ceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHH
Q 017957          158 LGLLPFGNQHLNEAIKGHRFNLAWIGAFP-GVKI--DTEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV  233 (363)
Q Consensus       158 ~~v~n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a  233 (363)
                      .+|+|.|||....+      ++++|+.+. ++..  .....+ ..|.+...+..  +..+.++++|.||++|+++|+  +
T Consensus       218 ~~V~n~dd~~~~~~------~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~--~~~~~l~l~G~hn~~NalaAi--a  287 (469)
T 1j6u_A          218 LVVTFAEDELTSHL------GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKR--YLELKLKVPGFHNVLNALAVI--A  287 (469)
T ss_dssp             EEEEETTCTTTGGG------CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEE--EEEEEESSCSHHHHHHHHHHH--H
T ss_pred             EEEEECCChhhccc------eEEEEECCCceEEEEEEECCCCCEEEEEEECCeE--EEEEEecCcCHHHHHHHHHHH--H
Confidence            89999999875432      567787532 2221  001111 23333222322  123578999999999999999  8


Q ss_pred             HHHHcCCCHHHHHHHhhcCCCCCCeeEEE--EeecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcC--CCCC
Q 017957          234 LGLDIGVDVEALNSTIEILRTPPHRMQIV--HRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG--QAKV  305 (363)
Q Consensus       234 ~~~~lgi~~~~i~~~l~~~~~~~gR~e~~--~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~--~~~~  305 (363)
                      ++..+|+++++|+++|++|+++|||||++  . ..+++++||| |||||+++++++++++    ++|+++|+|.  ..+.
T Consensus       288 ~a~~lgi~~~~i~~~L~~f~g~~gR~e~v~~~-~~~g~~vi~D-~aHnp~~~~a~l~al~~~~~~~~i~~I~g~g~~~r~  365 (469)
T 1j6u_A          288 LFDSLGYDLAPVLEALEEFRGVHRRFSIAFHD-PETNIYVIDD-YAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRL  365 (469)
T ss_dssp             HHHHTTCCHHHHHHHHHHCCCCTTSSEEEEEE-TTTTEEEEEE-CCCSHHHHHHHHHHHHHHCSSSEEEEEECCBC----
T ss_pred             HHHHcCCCHHHHHHHHHhCCCCCCCcEEEccc-ccCCcEEEEe-CCCCHHHHHHHHHHHHHhcCCCcEEEEEcCCCCCcc
Confidence            99999999999999999999999999999  5 3578999999 5999999999888764    3678888873  3322


Q ss_pred             CCCCCccchhhhhhhcccCcEEEEEc
Q 017957          306 LNGQESNGFEKLIEPLNHHRCVITVC  331 (363)
Q Consensus       306 g~~~~~~~~~~l~~~l~~~~~vi~~G  331 (363)
                      .     ..+..+++.++.+|.+|+++
T Consensus       366 ~-----~~~~~l~~~~~~~d~vil~~  386 (469)
T 1j6u_A          366 E-----REDGNFAKALQLADEVVVTE  386 (469)
T ss_dssp             ---------CHHHHHHTTSSEEEECC
T ss_pred             H-----HHHHHHHHHHhcCCEEEEcc
Confidence            1     12556777777789999974

>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=2.8e-48  Score=387.50  Aligned_cols=278  Identities=21%  Similarity=0.145  Sum_probs=211.1

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhhc-ccCC-----------CCCCCCcEEEEEeCcc
Q 017957           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALP-----------SSKPKFQVAVVEVSSY  109 (363)
Q Consensus        42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~~-~~~~-----------~~~~~~d~~VlE~g~~  109 (363)
                      +.++|+||||||||||++||+++|++.|+++++.||+|.++....... ++++           ..+.++|++|+|+|++
T Consensus       107 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~~i~~~~~~~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~  186 (498)
T 1e8c_A          107 NLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSH  186 (498)
T ss_dssp             SSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             cCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCcccCCeeeecCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCc
Confidence            568999999999999999999999999999999898776554321110 1111           0145689999999987


Q ss_pred             ccc--ccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCc---cEEEecc
Q 017957          110 QME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF---NLAWIGA  184 (363)
Q Consensus       110 ~l~--~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~---~~~~~~~  184 (363)
                      +++  .+.. ++|+++|||||++||+|+|||+|+|+++|++|++. ++++.+|+|.|||....+......   ++++||.
T Consensus       187 ~l~~~rl~~-~~p~vaViTNI~~DHld~~gt~e~ia~aK~~i~~~-~~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g~  264 (498)
T 1e8c_A          187 GLVQHRVAA-LKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI  264 (498)
T ss_dssp             HHHTTTTTT-CBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-SBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCC
T ss_pred             hhhcccccc-cCCCEEEEeCCChhhhhccCCHHHHHHHHHHHhcc-CCCCeEEEECCCHHHHHHHHhhhccCCcEEEEec
Confidence            654  3434 68999999999999999999999999999999997 567899999999998887754433   5667775


Q ss_pred             CC-----Cceec---cccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCC
Q 017957          185 FP-----GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP  256 (363)
Q Consensus       185 ~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~  256 (363)
                      ..     ++...   ....+..|.+...+...   .+.++++|.||++|+++|+  +++..+|+++++|+++|++|+++|
T Consensus       265 ~~~~~~~d~~~~~~~~~~~g~~f~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~~~~lGi~~~~i~~~L~~~~~~~  339 (498)
T 1e8c_A          265 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDG---EIESHLMGAFNVSNLLLAL--ATLLALGYPLADLLKTAARLQPVC  339 (498)
T ss_dssp             CTTTCSEEEEEEEEEECSSCEEEEEEETTCCE---EEEECSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHGGGCCCCT
T ss_pred             CCCCCcCCEEEEEEEEcCCceEEEEEECCceE---EEEecCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCC
Confidence            32     22211   01112233332221111   2478999999999999999  899999999999999999999999


Q ss_pred             CeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchh-hhhhhcc-cCcEEEEEc
Q 017957          257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFE-KLIEPLN-HHRCVITVC  331 (363)
Q Consensus       257 gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~-~l~~~l~-~~~~vi~~G  331 (363)
                      ||||++. ..+++++|+| |||||+|++++++.++   ++|+++|+|+..++.     ..++ .+++... .+|.++++|
T Consensus       340 gR~e~v~-~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~r~i~V~G~g~dr~-----~~~~~~~~~~~~~~~d~vi~~~  412 (498)
T 1e8c_A          340 GRMEVFT-APGKPTVVVD-YAHTPDALEKALQAARLHCAGKLWCVFGCGGDRD-----KGKRPLMGAIAEEFADVAVVTD  412 (498)
T ss_dssp             TSSEEEC-CTTSCEEEEE-CCCSHHHHHHHHHHHHHTCSSCEEEEECCCSSSC-----STHHHHHHHHHHHHCSEEEECC
T ss_pred             CceEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCCEEEEECCCCCcc-----hhHHHHHHHHHHhCCCEEEEcC
Confidence            9999995 3457789999 7999999999999874   368999999755432     1244 3555444 489999998


Q ss_pred             cc
Q 017957          332 AL  333 (363)
Q Consensus       332 ~~  333 (363)
                      +.
T Consensus       413 ~~  414 (498)
T 1e8c_A          413 DN  414 (498)
T ss_dssp             SC
T ss_pred             CC
Confidence            65

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*

Probab=100.00  E-value=7.2e-48  Score=387.27  Aligned_cols=280  Identities=20%  Similarity=0.205  Sum_probs=212.6

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhh-cccCC-----------CCCCCCcEEEEEeCcc
Q 017957           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFH-CIALP-----------SSKPKFQVAVVEVSSY  109 (363)
Q Consensus        42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~-~~~~~-----------~~~~~~d~~VlE~g~~  109 (363)
                      +.++|+||||||||||++||+++|++.|+++++.||++..+...... .++++           ..+.++|++|+|+|++
T Consensus       145 ~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~~~~i~~~~~~~~~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~  224 (535)
T 2wtz_A          145 RLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSH  224 (535)
T ss_dssp             SSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEECCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             cceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCcceeECCEecccCCccCcHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence            56899999999999999999999999999999989876554422110 00111           0135789999999986


Q ss_pred             ccc--ccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCC--CCcEEEEeCCChhHHHHHhcCCccEEEeccC
Q 017957          110 QME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV--NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF  185 (363)
Q Consensus       110 ~l~--~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~--~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~  185 (363)
                      +++  .+.. ++|+++|||||+.||+|+|||+|+|+++|++|++.++  +++.+|+|.|||....+..... ++++||..
T Consensus       225 ~l~~~rl~~-~~p~vaViTNI~~DHld~~gs~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~~-~v~~~g~~  302 (535)
T 2wtz_A          225 ALALGRVDG-TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA-DAITVSAA  302 (535)
T ss_dssp             HHHTTTTTT-CCEEEEEECCCCSCCTTTSSSHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHHS-SCEEEESS
T ss_pred             ccccccccc-CCcCEEEEcCCChHHhhhcCCHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhcC-CEEEEecC
Confidence            543  3333 7899999999999999999999999999999999775  5789999999998877765433 67888864


Q ss_pred             C---Cceec---cc-cccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCe
Q 017957          186 P---GVKID---TE-AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR  258 (363)
Q Consensus       186 ~---~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR  258 (363)
                      .   ++...   .. ..+..|.+...+...  ..+.++++|.||++|+++|+  +++..+|+++++|+++|++|+ +|||
T Consensus       303 ~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~--~~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~~~-~~gR  377 (535)
T 2wtz_A          303 DRPAHWRATDVAPTDAGGQQFTAIDPAGVG--HHIGIRLPGRYNVANCLVAL--AILDTVGVSPEQAVPGLREIR-VPGR  377 (535)
T ss_dssp             SSCCSEEEEEEEEETTTEEEEEEECTTSCE--EEEEESCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHTTCC-CTTS
T ss_pred             CCcCcEEEEEEEEcCCCCeEEEEEeCCceE--EEEEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCC-CCCc
Confidence            3   22211   11 122334443222110  12478999999999999999  899999999999999999999 8999


Q ss_pred             eEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc--CCcEEEEEcCCCCCCCCCCccchhhhhhhcc-cCcEEEEEcccc
Q 017957          259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITVCALL  334 (363)
Q Consensus       259 ~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~-~~~~vi~~G~~~  334 (363)
                      ||++. ..+++++|+| |||||+|++++++.++  ++|+++|+|++.++..    ..+..+++.+. .+|.++++|+..
T Consensus       378 ~e~v~-~~~~~~viiD-yahNP~s~~aal~~l~~~~~r~i~V~G~~gdr~~----~~~~~~~~~a~~~~d~vi~~~~~~  450 (535)
T 2wtz_A          378 LEQID-RGQGFLALVD-YAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDP----GKRAPMGRIAAQLADLVVVTDDNP  450 (535)
T ss_dssp             SEECC-SSCSSEEEEE-CCCSHHHHHHHHHTTCCSSSCEEEEECCCTTSCG----GGHHHHHHHHHHHCSEEEECCSCC
T ss_pred             eEEEE-cCCCcEEEEE-CCCCHHHHHHHHHHhhCCCCcEEEEECCCCccch----hhHHHHHHHHHhcCCEEEEcCCCC
Confidence            99996 3457778888 7999999999999986  4578999998765422    12344566554 488999998664

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=100.00  E-value=8.1e-47  Score=357.52  Aligned_cols=246  Identities=18%  Similarity=0.195  Sum_probs=194.6

Q ss_pred             eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeE-----eecc
Q 017957            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-----VGGN   77 (363)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~-----~~gn   77 (363)
                      -++|+||+++++||++++|+++|+|+++++|++++...+..++|+||||||||||++||+++|+++|.++.     ..||
T Consensus        68 d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n  147 (326)
T 3eag_A           68 DVYVIGNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPEN  147 (326)
T ss_dssp             SEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETT
T ss_pred             CEEEECCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceecc
Confidence            36899999999999999999999999999999987532457899999999999999999999999998764     2367


Q ss_pred             cchhhhhhhhhcccCCCCCCCCcEEEEEeCccccccc-----CccccccEEEEeCCChhhhccCCCHHHHHHHHHHhccc
Q 017957           78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP-----NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH  152 (363)
Q Consensus        78 ig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~-----~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~  152 (363)
                      +|.|.....-  ... ....+.|++|+|+|+++....     ...++|+++|||||++||+|+|||+|+|+++|.+|++.
T Consensus       148 ~~~~~~~~~p--~~~-~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~vaviTNI~~DHLd~~gs~e~y~~aK~~i~~~  224 (326)
T 3eag_A          148 FGVSARLPQT--PRQ-DPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRT  224 (326)
T ss_dssp             SSCSEECCCC--CSS-CTTSCCCEEEEECCCSEEETTEEEEGGGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHTT
T ss_pred             CCcceecCCc--ccc-ccCCCCCEEEEEccccccchhhcccceeEecCCEEEECCCcHHHHhhcCCHHHHHHHHHHHHHh
Confidence            7766321100  000 124567999999999875432     11379999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeCCChhHHHHHhc-CCccEEEeccCCCceecc-ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHH
Q 017957          153 MVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA  230 (363)
Q Consensus       153 ~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~  230 (363)
                      +++++.+|+|.|||....+... ...++++||...++.... ...+. |.+...+..  +..+.++++|+||++|+++|+
T Consensus       225 ~~~~~~~V~n~Dd~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~g~-f~~~~~~~~--~~~~~l~l~G~hNv~NalaAi  301 (326)
T 3eag_A          225 VPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGTEHGWQAGEANADGS-FDVLLDGKT--AGRVKWDLMGRHNRMNALAVI  301 (326)
T ss_dssp             SCTTSEEEEESSCHHHHHHHTTCCCSCEEEESSSSSEEEEEECTTSC-EEEEETTEE--EEEECCCCCSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCHHHHHHHhhccCCCEEEECCCCcEEEEEecCCcE-EEEEECCce--EEEEEecCCcHHHHHHHHHHH
Confidence            9889999999999999887653 345788888644443211 11122 444434432  234689999999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHhhcCCCCC
Q 017957          231 LSVLGLDIGVDVEALNSTIEILRTPP  256 (363)
Q Consensus       231 ~~a~~~~lgi~~~~i~~~l~~~~~~~  256 (363)
                        +++..+|+++++|+++|++|++++
T Consensus       302 --a~a~~lGi~~~~i~~~L~~f~gv~  325 (326)
T 3eag_A          302 --AAARHVGVDIQTACEALGAFKNVK  325 (326)
T ss_dssp             --HHHHHHTCCHHHHHHHHHTCCCEE
T ss_pred             --HHHHHcCCCHHHHHHHHHhCCCCC
Confidence              899999999999999999999854

>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*

Probab=100.00  E-value=2.1e-45  Score=365.08  Aligned_cols=288  Identities=17%  Similarity=0.188  Sum_probs=213.4

Q ss_pred             ceeeHHHHHHhhCC---CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeeccc------------chhhhhhhhh---
Q 017957           27 RVMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFH---   88 (363)
Q Consensus        27 ~~l~~~~~~~~~~~---~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gni------------g~p~~~~~~~---   88 (363)
                      +.+.+++.+.+.+.   ++.++|+||||||||||++||+++|+++|++++++++-            |.+++...+.   
T Consensus        45 ~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~~  124 (487)
T 2vos_A           45 PSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATY  124 (487)
T ss_dssp             TTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEECCCCcCcccceEEECCEECCHHHHHHHH
Confidence            46778887776552   46789999999999999999999999999999665542            2222111000   


Q ss_pred             -----------------------cccCC----------CCCCCCcEEEEEeCcc-cccccCccccccEEEEeCCChhhhc
Q 017957           89 -----------------------CIALP----------SSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTPDHLE  134 (363)
Q Consensus        89 -----------------------~~~~~----------~~~~~~d~~VlE~g~~-~l~~~~~~~~p~i~viTnI~~dHl~  134 (363)
                                             .++..          ..+.++|++|+|+|++ +++.++. ++|+++|||||+.||++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~VlEvg~gg~~d~tn~-i~p~vaVITnI~~DHld  203 (487)
T 2vos_A          125 REIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRWDATNV-INAPVAVITPISIDHVD  203 (487)
T ss_dssp             HHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCS-SCCSEEEECCCCCCBCS
T ss_pred             HHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccc-cCCCEEEECCcchhhhh
Confidence                                   00000          0145789999999985 7887765 89999999999999999


Q ss_pred             cCC-CHHHHHHHHHHhcccC---CCCcEEEEeCCChhHHHHH----hcCCccEEEeccCCCceecc---ccccceEEEec
Q 017957          135 RHK-TMKNYALTKCHLFSHM---VNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDT---EAKTASFEVPA  203 (363)
Q Consensus       135 ~~g-t~e~~~~~K~~i~~~~---~~~~~~v~n~dd~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  203 (363)
                      +|| |+|+|+.+|++|++.+   ++++++|+|.|||....+.    .....++++|+.+  +....   ...+..+.+..
T Consensus       204 ~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~g~d--~~~~~~~~~~~g~~~~~~~  281 (487)
T 2vos_A          204 YLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDSE--FAVLRRQIAVGGQVLQLQG  281 (487)
T ss_dssp             CSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTTCEEEEBTTT--BEEEEEEEETTEEEEEEEE
T ss_pred             hhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHHHHHcCCeEEEecCc--eEEEeeccccCCceEEEec
Confidence            999 9999999999999765   6788999999999765543    2224567777642  22211   11122344332


Q ss_pred             CCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHc-------CCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCC
Q 017957          204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-------GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK  276 (363)
Q Consensus       204 ~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~l-------gi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~  276 (363)
                      .+..  +..+.++++|.||++|+++|+  +++..+       |++.+.|+++|++|+ +|||||++.  . +..+|+| +
T Consensus       282 ~~~~--~~~~~l~l~G~hn~~Na~aAi--aa~~~l~~~~~~~gi~~~~i~~gL~~~~-~pGR~e~v~--~-~~~vi~D-~  352 (487)
T 2vos_A          282 LGGV--YSDIYLPLHGEHQAHNAVLAL--ASVEAFFGAGAQRQLDGDAVRAGFAAVT-SPGRLERMR--S-APTVFID-A  352 (487)
T ss_dssp             TTEE--EEEEEECCCSHHHHHHHHHHH--HHHHHHTTC----CCCHHHHHHHHHTCC-CTTSSEEEE--T-TTEEEEC-C
T ss_pred             CCcc--cceeecCCCCHHHHHHHHHHH--HHHHHHhhccccCCCCHHHHHHHHHhCc-CCCceEEEc--C-CCeEEEE-C
Confidence            2222  113478999999999999999  777777       799999999999999 599999995  3 4578888 5


Q ss_pred             CCCHHHHHHHHhccc----CCcEEEEEcCCCCCCCCCCccchhhhhhhcc-cCcEEEEEccc
Q 017957          277 ATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITVCAL  333 (363)
Q Consensus       277 a~np~s~~~al~~~~----~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~-~~~~vi~~G~~  333 (363)
                      ||||+|++++++.++    .+|+++|+|++.++       +++.+.+.+. .+|.+|+++..
T Consensus       353 AHNp~a~~a~l~~l~~~~~~~~~i~V~G~~~dk-------d~~~~~~~l~~~~d~vilt~~~  407 (487)
T 2vos_A          353 AHNPAGASALAQTLAHEFDFRFLVGVLSVLGDK-------DVDGILAALEPVFDSVVVTHNG  407 (487)
T ss_dssp             CCSHHHHHHHHHHHHHSCCCSEEEEEECCBTTB-------CHHHHHHHHTTTCSEEEECCCS
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCC-------CHHHHHHHHHhhCCEEEEeCCC
Confidence            999999999988874    35789999998775       3567777765 47999999853

>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A

Probab=100.00  E-value=3e-45  Score=359.26  Aligned_cols=270  Identities=16%  Similarity=0.146  Sum_probs=203.9

Q ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc------------cchhhhhhhhh--------------------
Q 017957           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFH--------------------   88 (363)
Q Consensus        41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn------------ig~p~~~~~~~--------------------   88 (363)
                      ++.++|+||||||||||++||+++|++.|++++..++            .|.+++...+.                    
T Consensus        37 ~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~ig~~~~~~  116 (428)
T 1jbw_A           37 QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADF  116 (428)
T ss_dssp             GSSCEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             hcCcEEEEECCCChHHHHHHHHHHHHHCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHHHHHHHHHHhhcccccCC
Confidence            3578999999999999999999999999999987666            34333221100                    


Q ss_pred             cccCC----------CCCCCCcEEEEEeCcc-cccccCccccccEEEEeCCChhhhccCC-CHHHHHHHHHHhcccCCCC
Q 017957           89 CIALP----------SSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNT  156 (363)
Q Consensus        89 ~~~~~----------~~~~~~d~~VlE~g~~-~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~K~~i~~~~~~~  156 (363)
                      .++..          ..+.++|++|+|+|++ +++.++. ++|+++|||||+.||+|+|| |+|+|+++|++|++   ++
T Consensus       117 ~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~~-~~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~---~~  192 (428)
T 1jbw_A          117 NVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNV-ITPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIK---RG  192 (428)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCS-CCCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCC---TT
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEEecCCCcccccccc-CCCCEEEECcCcHhhhhhhCCCHHHHHHHHhcccc---CC
Confidence            00000          0145789999999975 8887776 79999999999999999999 99999999999998   58


Q ss_pred             cEEEEeCCChhHHHHHhc----CCccEEEeccCCCceecc---ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHH
Q 017957          157 KLGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA  229 (363)
Q Consensus       157 ~~~v~n~dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A  229 (363)
                      +.+|+|.||+....+...    ...++++|+.+  +....   ...+..+.+...+...  ..+.++++|.||++|+++|
T Consensus       193 ~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~l~G~hn~~Na~aA  268 (428)
T 1jbw_A          193 IPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRD--FSVPKAKLHGWGQRFTYEDQDGRI--SDLEVPLVGDYQQRNMAIA  268 (428)
T ss_dssp             CCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--EEEEEEEECSSSEEEEEEETTEEE--EEEEESCCSTHHHHHHHHH
T ss_pred             ceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCcc--ceeeccccccCCceEEEecCCccc--cccccCCCChhHHHHHHHH
Confidence            899999999987665422    24567888752  22111   0112234443222222  1357899999999999999


Q ss_pred             HHHHHHHHc-C-----CCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEc
Q 017957          230 ALSVLGLDI-G-----VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLG  300 (363)
Q Consensus       230 ~~~a~~~~l-g-----i~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG  300 (363)
                      +  +++..+ |     +++++|+++|++|+ +|||||++.  .++..+|||  +|||+|++++++.++   ++|+++|+|
T Consensus       269 i--a~~~~l~g~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~~~viiD~--AhNp~s~~a~l~~l~~~~~~~~i~V~g  341 (428)
T 1jbw_A          269 I--QTAKVYAKQTEWPLTPQNIRQGLAASH-WPARLEKIS--DTPLIVIDG--AHNPDGINGLITALKQLFSQPITVIAG  341 (428)
T ss_dssp             H--HHHHHHHHHTTCCCCHHHHHHHHHTCC-CTTSSEEEE--TTTTEEEEC--CCSHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred             H--HHHHHHhhccCCCCCHHHHHHHHHhCc-CCCceEEec--CCCcEEEEC--CcCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            9  788888 9     99999999999999 799999996  356555554  789999999999885   357899999


Q ss_pred             CCCCCCCCCCccchhhhhhhccc-CcEEEEEcc
Q 017957          301 GQAKVLNGQESNGFEKLIEPLNH-HRCVITVCA  332 (363)
Q Consensus       301 ~~~~~g~~~~~~~~~~l~~~l~~-~~~vi~~G~  332 (363)
                      ++.++       +|.++.+.+.+ +|.+|++++
T Consensus       342 ~~~~k-------d~~~~~~~~~~~~d~vi~~~~  367 (428)
T 1jbw_A          342 ILADK-------DYAAMADRLTAAFSTVYLVPV  367 (428)
T ss_dssp             CSSST-------THHHHHHHHHHHCSEEEECCC
T ss_pred             eCCCC-------CHHHHHHHHhhhCCEEEEECC
Confidence            98543       57788887754 899999555

>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*

Probab=100.00  E-value=2.9e-45  Score=359.90  Aligned_cols=293  Identities=17%  Similarity=0.129  Sum_probs=211.1

Q ss_pred             eeeHHHHHHhhCC---CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeeccc------------chhhhhhhhhc---
Q 017957           28 VMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFHC---   89 (363)
Q Consensus        28 ~l~~~~~~~~~~~---~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gni------------g~p~~~~~~~~---   89 (363)
                      -|.++..+++.+.   ++.|+||||||||||||++||+++|+++|++++++++-            |.+++...+..   
T Consensus        34 gL~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~  113 (437)
T 3nrs_A           34 GLERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFA  113 (437)
T ss_dssp             CCHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHH
Confidence            3566666655542   46789999999999999999999999999999876662            33333221100   


Q ss_pred             ----------ccCC----------CCCCCCcEEEEEeC-cccccccCccccccEEEEeCCChhhhccCC-CHHHHHHHHH
Q 017957           90 ----------IALP----------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKC  147 (363)
Q Consensus        90 ----------~~~~----------~~~~~~d~~VlE~g-~~~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~K~  147 (363)
                                ++..          ..+.++|++|+|+| +|++|.++. ++|+++|||||+.||+|+|| |+|+|+.+|+
T Consensus       114 ~v~~~~~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlggrld~tni-i~p~vaVITnI~~DHld~lG~t~e~ia~~Ka  192 (437)
T 3nrs_A          114 QIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDATNI-VDSDVAAITSIALDHTDWLGYDRESIGREKA  192 (437)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSSTTSGGGG-SCCSEEEECCCCCCBCCCTTCSHHHHHHHHG
T ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccc-cCCCEEEEcCccHHHHHHhCCcHHHHHHHHH
Confidence                      0000          11467899999999 568998776 89999999999999999999 9999999999


Q ss_pred             HhcccCCCCcEEEEeCCChh--HHHHHhcCCccEEEeccCCCceec--------cccccceEEEecCCeEEEEEeeccCC
Q 017957          148 HLFSHMVNTKLGLLPFGNQH--LNEAIKGHRFNLAWIGAFPGVKID--------TEAKTASFEVPAVGVVSQLQLHNMKV  217 (363)
Q Consensus       148 ~i~~~~~~~~~~v~n~dd~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~l  217 (363)
                      +|++   +++++|+|.||+.  +...+.....++++++.+.++...        .......+.+...+.  .  ...+++
T Consensus       193 ~I~~---~~~~~V~~~d~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~l  265 (437)
T 3nrs_A          193 GVFR---GGKPAVVGEPDMPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGER--Q--LTGLPV  265 (437)
T ss_dssp             GGCC---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTTTEEEEC--------------CCEEEEETTE--E--EEEECC
T ss_pred             hhcc---CCCeEEECCccHHHHHHHHHHHcCCcEEEecccceeeecccccccccccccCceEEEecCCc--c--eeccCC
Confidence            9998   5889999988763  334444456677888764222111        000112233332221  1  124555


Q ss_pred             C--chhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----
Q 017957          218 M--GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----  291 (363)
Q Consensus       218 ~--G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----  291 (363)
                      +  |.||+.|+++|+  ++ ..+|++.++|+++|++|+ +|||||++.  .+ ..+|+|+ ||||+|++++++.++    
T Consensus       266 ~~~~~~Na~~Alaa~--~~-~~lgi~~~~i~~gL~~~~-~pGR~e~v~--~~-~~vi~D~-AHNp~a~~all~~l~~~~~  337 (437)
T 3nrs_A          266 PNVPLANAATALAVL--HY-SELPLSDEAIRQGLQAAS-LPGRFQVVS--EQ-PLLILDV-AHNPHAARYLVNRLAQVIN  337 (437)
T ss_dssp             CSSCHHHHHHHHHHH--HH-HTCCCCHHHHHHHHHHCC-CTTSSEEEE--TT-TEEEECC-CCSHHHHHHHHHHHHHTC-
T ss_pred             cchhHHHHHHHHHHH--HH-hCCCCCHHHHHHHHHhCC-CCCceEEEe--cC-CeEEEEC-CCCHHHHHHHHHHHHhhcc
Confidence            5  889999988887  44 568999999999999999 599999995  34 4688885 999999999887765    


Q ss_pred             ------CCcEEEEEcCCCCCCCCCCccchhhhhhhcc-cCcEEEEEcccc-----hHHHHhhCC
Q 017957          292 ------GHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITVCALL-----FLKIVIQFP  343 (363)
Q Consensus       292 ------~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~-~~~~vi~~G~~~-----~~~~~~~~~  343 (363)
                            ++|+++|+|++.++       +++++.+.+. .++.++++|+..     ...+.+.+.
T Consensus       338 ~~~~~~~~r~i~V~G~~~dk-------d~~~~~~~l~~~~~~v~~~~~~~~r~~~~~~l~~~~~  394 (437)
T 3nrs_A          338 PVNASKQGKVRAVVGMLSDK-------DIAGTLACLSERVDEWYCAPLEGPRGASAGQLAEHLV  394 (437)
T ss_dssp             -------CCEEEEECCBTTB-------CHHHHHHHHTTTCCEEEECCCSSTTBCCHHHHHTTCS
T ss_pred             hhhhcCCCCEEEEEeCCCCC-------CHHHHHHHHHhcCCEEEEeCCCCCCCCCHHHHHHHHh
Confidence                  36799999987653       5888888876 489999998653     235555553

>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2

Probab=100.00  E-value=9.8e-45  Score=356.60  Aligned_cols=271  Identities=17%  Similarity=0.178  Sum_probs=199.7

Q ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc------------cchhhhhhhhh-------------------c
Q 017957           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFH-------------------C   89 (363)
Q Consensus        41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn------------ig~p~~~~~~~-------------------~   89 (363)
                      ++.++|+||||||||||++||+++|++.|+++++.++            .|.|++...+.                   .
T Consensus        50 ~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (442)
T 1o5z_A           50 LEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFS  129 (442)
T ss_dssp             GSSEEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHTTSTTTC
T ss_pred             hcCCEEEEECCcCHHHHHHHHHHHHHHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHHHHHHHHHhhhcccccCC
Confidence            3678999999999999999999999999999987664            25555432110                   0


Q ss_pred             ccCC----------CCCCCCcEEEEEeC-cccccccCccccccEEEEeCCChhhhccCC-CHHHHHHHHHHhcccCCCCc
Q 017957           90 IALP----------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTK  157 (363)
Q Consensus        90 ~~~~----------~~~~~~d~~VlE~g-~~~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~  157 (363)
                      ++..          ..+.++|++|+|+| +++++.++. ++|+++|||||+.||+|+|| |+|+|+.+|++|++   +++
T Consensus       130 ~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~~-~~P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~---~~~  205 (442)
T 1o5z_A          130 PSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNV-VFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIK---ERV  205 (442)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTCGGGG-CCCSCEEECCCCC-------CCHHHHHHHHGGGCC---TTC
T ss_pred             CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCcccccc-CCCCEEEECCccHhhhhhhCcCHHHHHHHHHhhcc---CCc
Confidence            0000          01357899999999 578888776 89999999999999999999 99999999999998   588


Q ss_pred             EEEEeCCChhHHHHHh----cCCccEEEeccCCCceecc---ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHH
Q 017957          158 LGLLPFGNQHLNEAIK----GHRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA  230 (363)
Q Consensus       158 ~~v~n~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~  230 (363)
                      .+|+|.||+....+..    ....++++|+.+  +....   ...+..+.+... ..  +..+.++++|.||++|+++|+
T Consensus       206 ~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~-~~--~~~~~l~l~G~hn~~NalaAi  280 (442)
T 1o5z_A          206 PLVTGERKREALKVMEDVARKKSSRMYVIDKD--FSVKVKSLKLHENRFDYCGE-NT--FEDLVLTMNGPHQIENAGVAL  280 (442)
T ss_dssp             CEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--BEEEEEECCTTCEEEEEESS-SE--EEEEEESSCSTHHHHHHHHHH
T ss_pred             cEEEcCCChHHHHHHHHHHHHcCCcEEEeCcc--eeeeccccccCCceEEEecc-cc--ccccccCCCcHhHHHHHHHHH
Confidence            9999999988766543    224567788752  22211   111223433322 11  123578999999999999999


Q ss_pred             HHHHHH--HcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCCCC
Q 017957          231 LSVLGL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK  304 (363)
Q Consensus       231 ~~a~~~--~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~~~  304 (363)
                        +++.  .+|+++++|+++|++|+ +|||||++.  .++..+|.| +||||+|++++++.++    ++|+++|+|++.+
T Consensus       281 --a~~~~~~lgi~~~~i~~~L~~~~-~~gR~e~~~--~~~~~viiD-~AhNp~s~~~~l~~l~~~~~~~~~i~V~g~~~d  354 (442)
T 1o5z_A          281 --KTLEATGLPLSEKAIREGLKNAK-NLGRFEILE--KNGKMYILD-GAHNPHGAESLVRSLKLYFNGEPLSLVIGILDD  354 (442)
T ss_dssp             --HHHHHHCCCCCHHHHHHHHHHCC-CTTSSEEEE--ETTEEEEEC-CCCSHHHHHHHHHHHHHHCTTCCEEEEECCCTT
T ss_pred             --HHHHHhhcCCCHHHHHHHHHhCC-CCCceEEEE--cCCCeEEEE-CCcCHHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence              8888  89999999999999999 699999996  343456677 5999999999999874    3678999998764


Q ss_pred             CCCCCCccchhhhhhhccc-CcEEEEEccc
Q 017957          305 VLNGQESNGFEKLIEPLNH-HRCVITVCAL  333 (363)
Q Consensus       305 ~g~~~~~~~~~~l~~~l~~-~~~vi~~G~~  333 (363)
                      +       ++.++.+.+.+ +|.++++|..
T Consensus       355 k-------d~~~~~~~l~~~~d~vi~~~~~  377 (442)
T 1o5z_A          355 K-------NREDILRKYTGIFERVIVTRVP  377 (442)
T ss_dssp             S-------CHHHHHGGGTTTCSEEEECCCS
T ss_pred             C-------CHHHHHHHHHhhCCEEEEECCC
Confidence            3       57788887764 8999999854

>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*

Probab=100.00  E-value=1.7e-43  Score=346.19  Aligned_cols=266  Identities=18%  Similarity=0.123  Sum_probs=196.0

Q ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeeccc------------chhhhhhhhh-------------cccCC--
Q 017957           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFH-------------CIALP--   93 (363)
Q Consensus        41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gni------------g~p~~~~~~~-------------~~~~~--   93 (363)
                      ++.++|+||||||||||++||+++|+++|+++++.++-            |.|++...+.             .++..  
T Consensus        47 ~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~~~~~~t~~e~  126 (422)
T 1w78_A           47 PAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARGDISLTYFEY  126 (422)
T ss_dssp             CSSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred             cCCcEEEEeCCcChHHHHHHHHHHHHHCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHhccCCCChHHH
Confidence            46789999999999999999999999999998765442            2222211100             00000  


Q ss_pred             --------CCCCCCcEEEEEeC-cccccccCccccccEEEEeCCChhhhccCC-CHHHHHHHHHHhcccCCCCcEEEEeC
Q 017957           94 --------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF  163 (363)
Q Consensus        94 --------~~~~~~d~~VlE~g-~~~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~~~v~n~  163 (363)
                              ..+.++|++|+|+| +++++.++. ++|+++|||||++||+|+|| |+|+|+.+|++|++   +++.+|+|.
T Consensus       127 ~t~~a~~~~~~~~~d~~VlEvgl~~~~d~t~~-~~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~---~~~~~v~~~  202 (422)
T 1w78_A          127 GTLSALWLFKQAQLDVVILEVGLGGRLDATNI-VDADVAVVTSIALDHTDWLGPDRESIGREKAGIFR---SEKPAIVGE  202 (422)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECSSSSTTSGGGG-SCCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCC---TTSEEEECC
T ss_pred             HHHHHHHHHHHcCCCEEEEecCCCcccccccC-CCCCEEEECCcChhhhhhhCCCHHHHHHHHHhhcc---CCCcEEEcC
Confidence                    01346899999999 578887765 89999999999999999999 99999999999997   578899988


Q ss_pred             CChhH--HHHHhcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHc--C
Q 017957          164 GNQHL--NEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI--G  239 (363)
Q Consensus       164 dd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~l--g  239 (363)
                      |++..  ...+.....++++|+.+  +....+  ...+.+...+...    ..++++ .||++|+++|+  +++..+  |
T Consensus       203 d~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~--~~~~~~~~~~~~~----~~l~l~-~hn~~Na~aAi--a~~~~~~~g  271 (422)
T 1w78_A          203 PEMPSTIADVAQEKGALLQRRGVE--WNYSVT--DHDWAFSDAHGTL----ENLPLP-LVPQPNAATAL--AALRASGLE  271 (422)
T ss_dssp             SSCCHHHHHHHHHHTCEEEEBTTT--BEEEEC--SSCEEEEETTEEE----EEECCC-SSCHHHHHHHH--HHHHHHTCC
T ss_pred             ccHHHHHHHHHHHcCCceEEeCcc--eeeecc--CceEEEecCCccc----ccCCch-HHHHHHHHHHH--HHHHHhCCC
Confidence            77642  22222234567788752  222211  1223332222111    367888 99999999999  677765  8


Q ss_pred             CCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCCCCCCCCCCccchh
Q 017957          240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFE  315 (363)
Q Consensus       240 i~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~~~~g~~~~~~~~~  315 (363)
                      +++++|+++|++|+ +|||||++.  .++ .+|+|+ ||||+|++++++.++    ++|+++|+|++.++       +|+
T Consensus       272 i~~~~i~~~L~~~~-~~gR~e~~~--~~~-~~i~D~-Ahnp~s~~~~l~~l~~~~~~~~~i~V~g~~~~k-------d~~  339 (422)
T 1w78_A          272 VSENAIRDGIASAI-LPGRFQIVS--ESP-RVIFDV-AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDK-------DIA  339 (422)
T ss_dssp             CCHHHHHHHHHHCC-CTTSSEEEE--TTT-EEEEEC-CCSHHHHHHHHHHHHHSCSCSCEEEEECCBTTS-------CHH
T ss_pred             CCHHHHHHHHHhCC-CCceEEEEe--CCC-eEEEEC-CCCHHHHHHHHHHHHHhCCCCCEEEEEeccCCC-------CHH
Confidence            99999999999999 599999995  344 577774 999999999988763    36899999987653       577


Q ss_pred             hhhhhcc-cCcEEEEEccc
Q 017957          316 KLIEPLN-HHRCVITVCAL  333 (363)
Q Consensus       316 ~l~~~l~-~~~~vi~~G~~  333 (363)
                      ++.+.+. .+|.++++|..
T Consensus       340 ~~~~~l~~~~d~vi~~~~~  358 (422)
T 1w78_A          340 GTLAWLKSVVDDWYCAPLE  358 (422)
T ss_dssp             HHHHHHHTTCSEEEECCCC
T ss_pred             HHHHHHHhhCCEEEEECCC
Confidence            8888775 58999999964

>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}

Probab=99.32  E-value=2.5e-12  Score=108.74  Aligned_cols=87  Identities=14%  Similarity=0.136  Sum_probs=52.0

Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCCCCC-CCCCCccchhh
Q 017957          242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKV-LNGQESNGFEK  316 (363)
Q Consensus       242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~~~~-g~~~~~~~~~~  316 (363)
                      .++|+++|++|++++||||++. ..+++++||| |||||+|++++++.++    ++|+++|+|..... -+   ...+.+
T Consensus        11 ~~~i~~~L~~f~gv~~R~E~i~-~~~g~~vi~D-yaHnP~si~a~l~al~~~~~~~riivvf~~g~~s~r~---k~~~~~   85 (163)
T 3mvn_A           11 VDLGTENLYFQSNAQRRLEVKG-VVNNITVYDD-FAHHPTAITATIDALRAKVGQQRILAVLEPRSNTMKM---GVHKHE   85 (163)
T ss_dssp             ----------------CCEEEE-EETTEEEEEE-CCCSHHHHHHHHHHHHHHHTTSCEEEEECCC------------CHH
T ss_pred             HHHHHHHHHhCCCCCCCeEEEe-cCCCcEEEEc-CCCCHHHHHHHHHHHHHhcCCCcEEEEECCCCcchhh---HHHHHH
Confidence            4578999999999999999996 4688999999 7999999999988764    46888888753211 00   123467


Q ss_pred             hhhhcccCcEEEEEccc
Q 017957          317 LIEPLNHHRCVITVCAL  333 (363)
Q Consensus       317 l~~~l~~~~~vi~~G~~  333 (363)
                      +++.++.+|.+|++|+.
T Consensus        86 ~~~~~~~aD~vi~~~~~  102 (163)
T 3mvn_A           86 LATSLQDADSVFIYQPP  102 (163)
T ss_dssp             HHHHHTTCSEEEEECC-
T ss_pred             HHHHHhcCCEEEEECCC
Confidence            77777779999999965

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.84  E-value=0.0021  Score=62.69  Aligned_cols=64  Identities=16%  Similarity=0.163  Sum_probs=50.5

Q ss_pred             eeeeccccC-CCcHHHHHHHhcCCce--eeHHHHHHhhCC---CCCc-EEEEeCCCChHHH-HHHHHHHHHhc
Q 017957            4 LWLFLLEFQ-LKATGLACLLQSGKRV--MSELDFAAQVIP---RSIK-ILAVTGTNGKSTV-VTFVGQMLNHL   68 (363)
Q Consensus         4 ~~~~~~~~~-~~~p~l~~a~~~~~~~--l~~~~~~~~~~~---~~~~-vI~VTGTnGKTTT-~~~l~~iL~~~   68 (363)
                      ++|.++..+ .+++..+.|+++|+++  .+++++.....+   .+.+ +|+|| |||||++ +.+|.+-|.+.
T Consensus        75 lVi~at~~~~~n~~i~~~a~~~~i~vn~~d~~e~~~~~~pa~~~~~~l~iaIs-T~Gksp~la~~ir~~ie~~  146 (457)
T 1pjq_A           75 LAIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSIIDRSPLMVAVS-SGGTSPVLARLLREKLESL  146 (457)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTTCEEEETTCTTSSSEECCEEEEETTEEEEEE-CTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCHHHHHHHHHHHHHcCCEEEECCCcccCceEeeeEEEeCCeEEEEE-CCCCChHHHHHHHHHHHHh
Confidence            566677777 4888899999999998  888887655542   2334 99999 9999998 88888888865

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=93.52  E-value=0.076  Score=48.93  Aligned_cols=35  Identities=31%  Similarity=0.382  Sum_probs=31.1

Q ss_pred             CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017957           42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      +.++|+|+|  -.|||||+.-|+..|.+.|+++....
T Consensus        47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID   83 (314)
T 3fwy_A           47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG   83 (314)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            678999996  77899999999999999999997543

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=93.10  E-value=0.27  Score=45.82  Aligned_cols=104  Identities=20%  Similarity=0.149  Sum_probs=61.8

Q ss_pred             CCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEeecc----------cchhhhhhhhh-------cccCCCCCCCCcE
Q 017957           42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGN----------LGNPLSEAAFH-------CIALPSSKPKFQV  101 (363)
Q Consensus        42 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~gn----------ig~p~~~~~~~-------~~~~~~~~~~~d~  101 (363)
                      +.+.|.|+||   -|||+|+..|...|++.|++++..+.          .|.|+.....+       .+......+++|+
T Consensus       168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~~D~~~~~~~ag~~e~~i~~~~~~~~D~  247 (350)
T 2g0t_A          168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEI  247 (350)
T ss_dssp             CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECCGGGSBGGGHHHHHHHHHHHHHHTTCSE
T ss_pred             cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCCCCceecchhhHHHHhhHHHhhhcCCCE
Confidence            4678999997   59999999999999999999865433          23232211111       0000000356789


Q ss_pred             EEEEeCccccccc------Cc--cccccEEEEeC-CChhhhccC------CCHHHHHHH
Q 017957          102 AVVEVSSYQMEIP------NK--YFCPTVSVVLN-LTPDHLERH------KTMKNYALT  145 (363)
Q Consensus       102 ~VlE~g~~~l~~~------~~--~~~p~i~viTn-I~~dHl~~~------gt~e~~~~~  145 (363)
                      .|+|-..+=....      ..  -.+|+..|+.- -++.|++.+      +++++....
T Consensus       248 ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~i~~~i~~  306 (350)
T 2g0t_A          248 VFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRL  306 (350)
T ss_dssp             EEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCCHHHHHHH
T ss_pred             EEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcCHHHHHHH
Confidence            9999873311110      01  15788888865 565666544      555554443

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=92.59  E-value=0.13  Score=45.70  Aligned_cols=40  Identities=30%  Similarity=0.417  Sum_probs=31.8

Q ss_pred             HhhCCCCCcEEEEeCCC---ChHHHHHHHHHHHHhcCCCeEee
Q 017957           36 AQVIPRSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        36 ~~~~~~~~~vI~VTGTn---GKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      .++..++.+.|-||||.   |||+++..|...|+++|+++..+
T Consensus        19 ~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~f   61 (251)
T 3fgn_A           19 NLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVC   61 (251)
T ss_dssp             ---CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence            33443567899999986   99999999999999999998654

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=91.99  E-value=0.2  Score=41.69  Aligned_cols=36  Identities=17%  Similarity=0.130  Sum_probs=29.7

Q ss_pred             CCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEeecc
Q 017957           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN   77 (363)
Q Consensus        42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~gn   77 (363)
                      ..++|+|+|..  ||||+...|...|+..|++++..-+
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~   40 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH   40 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence            46799999964  9999999999999999988865443

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=91.89  E-value=0.17  Score=42.66  Aligned_cols=32  Identities=28%  Similarity=0.408  Sum_probs=27.7

Q ss_pred             cEEEEe---CCCChHHHHHHHHHHHHhcCCCeEee
Q 017957           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        44 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      ++|+|+   |-.||||++..|+..|...|.++.+.
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli   36 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV   36 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence            688888   56789999999999999999988654

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=91.18  E-value=0.23  Score=43.30  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=29.9

Q ss_pred             CCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEee
Q 017957           42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        42 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      +.+.|-||||   .|||+++..|.+.|+++|.++..+
T Consensus         3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~   39 (228)
T 3of5_A            3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCL   39 (228)
T ss_dssp             TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence            4678999998   599999999999999999998653

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=91.06  E-value=0.19  Score=43.13  Aligned_cols=31  Identities=29%  Similarity=0.187  Sum_probs=27.3

Q ss_pred             cEEEEeCC---CChHHHHHHHHHHHHhcCCCeEe
Q 017957           44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        44 ~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      ++|.||++   .||||++.-|+..|.+.|.++..
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll   35 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG   35 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence            57888876   68999999999999999999865

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=90.04  E-value=0.3  Score=42.37  Aligned_cols=34  Identities=15%  Similarity=0.266  Sum_probs=28.7

Q ss_pred             CCcEEEEe---CCCChHHHHHHHHHHHHhc-CCCeEee
Q 017957           42 SIKILAVT---GTNGKSTVVTFVGQMLNHL-GIEAFVG   75 (363)
Q Consensus        42 ~~~vI~VT---GTnGKTTT~~~l~~iL~~~-g~~~~~~   75 (363)
                      ..++|+|+   |-.||||++..|+..|... |.++.+.
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli   40 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV   40 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence            56789998   5578999999999999998 9888543

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=90.04  E-value=0.84  Score=41.43  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=29.2

Q ss_pred             CCCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEe
Q 017957           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        41 ~~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      ++.++|.|||+   .||||++.-|+..|.+.|.++.+
T Consensus       102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLL  138 (299)
T 3cio_A          102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLF  138 (299)
T ss_dssp             CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEE
Confidence            45689999986   68999999999999999987744

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=89.55  E-value=0.55  Score=42.44  Aligned_cols=33  Identities=15%  Similarity=0.258  Sum_probs=28.4

Q ss_pred             CCCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeE
Q 017957           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF   73 (363)
Q Consensus        41 ~~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~   73 (363)
                      ++.++|.||++   .||||++.-|+..|.+.|.++.
T Consensus        90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVL  125 (286)
T 3la6_A           90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVL  125 (286)
T ss_dssp             TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEE
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEE
Confidence            46789999876   5899999999999999987774

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=89.42  E-value=0.64  Score=41.06  Aligned_cols=44  Identities=18%  Similarity=0.166  Sum_probs=33.0

Q ss_pred             HHHHHHhhCCCCCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEee
Q 017957           31 ELDFAAQVIPRSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        31 ~~~~~~~~~~~~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      ..+...++. +..++|+|+++   .||||++.-|+..|...|.++.+.
T Consensus         7 ~~~~a~~l~-~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli   53 (262)
T 2ph1_A            7 DEEIKERLG-KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL   53 (262)
T ss_dssp             HHHHHHHHT-TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             hhhhhhhhc-cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            334444444 34679999875   579999999999999999988653

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=89.29  E-value=0.4  Score=42.30  Aligned_cols=34  Identities=24%  Similarity=0.376  Sum_probs=30.2

Q ss_pred             CCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEee
Q 017957           42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        42 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      ..+.|-||||   .|||+++..|.+.|+++|.+++.+
T Consensus        20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~f   56 (242)
T 3qxc_A           20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILL   56 (242)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEE
Confidence            4689999998   699999999999999999998654

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=89.13  E-value=0.42  Score=41.24  Aligned_cols=32  Identities=22%  Similarity=0.367  Sum_probs=27.2

Q ss_pred             cEEEEeCC---CChHHHHHHHHHHHHhcCCCeEee
Q 017957           44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        44 ~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      ++|+|+++   .||||++..|+..|.+.|.++.+.
T Consensus         3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli   37 (237)
T 1g3q_A            3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV   37 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence            57888764   589999999999999999988653

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=89.03  E-value=0.7  Score=41.33  Aligned_cols=34  Identities=18%  Similarity=0.393  Sum_probs=29.2

Q ss_pred             CCCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEe
Q 017957           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        41 ~~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      ++.++|.||++   .||||++.-|+..|.+.|.++.+
T Consensus        80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLL  116 (271)
T 3bfv_A           80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLI  116 (271)
T ss_dssp             CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEE
Confidence            46789999965   69999999999999999988744

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=88.89  E-value=0.37  Score=42.52  Aligned_cols=34  Identities=21%  Similarity=0.376  Sum_probs=29.1

Q ss_pred             CCcEEEEeCCC---ChHHHHHHHHHHHHhcCCCeEee
Q 017957           42 SIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        42 ~~~vI~VTGTn---GKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      +.++|+|+++.   ||||++..|+..|...|.++.+.
T Consensus         5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli   41 (257)
T 1wcv_1            5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV   41 (257)
T ss_dssp             CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence            56899998654   79999999999999999988654

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=88.31  E-value=0.53  Score=43.29  Aligned_cols=35  Identities=23%  Similarity=0.504  Sum_probs=29.2

Q ss_pred             CCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEeec
Q 017957           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      +..+|+|+|.+  |||||+..|+..|...|.++.+.+
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid  140 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA  140 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            45699999865  899999999999999888876544

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=88.01  E-value=0.53  Score=42.28  Aligned_cols=31  Identities=29%  Similarity=0.369  Sum_probs=27.3

Q ss_pred             cEEEEe---CCCChHHHHHHHHHHHHhcCCCeEe
Q 017957           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        44 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      ++|+|+   |-.||||++..|+..|...|.++.+
T Consensus         5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vll   38 (286)
T 2xj4_A            5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAV   38 (286)
T ss_dssp             EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            589998   5678999999999999999998864

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=87.62  E-value=0.63  Score=42.51  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=28.6

Q ss_pred             CCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEeec
Q 017957           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      +..+|+|+|.+  |||||+..|+..|...|.++.+.+
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~  139 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA  139 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence            45689999965  799999999999998887775443

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=87.51  E-value=0.89  Score=38.39  Aligned_cols=34  Identities=29%  Similarity=0.459  Sum_probs=27.4

Q ss_pred             CCCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEe
Q 017957           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        41 ~~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      .+..+|+|+|.+  ||||++.+|...|...|..+..
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~   55 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV   55 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence            356799999965  8999999999999877655543

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=87.13  E-value=0.11  Score=46.86  Aligned_cols=63  Identities=13%  Similarity=0.061  Sum_probs=42.2

Q ss_pred             eeeeccccC-CCcHHHHHHHhc---CCce--eeHHHHHHhhCC---CCCc--EEEEeCCCChHHHH-HHHHHHHHh
Q 017957            4 LWLFLLEFQ-LKATGLACLLQS---GKRV--MSELDFAAQVIP---RSIK--ILAVTGTNGKSTVV-TFVGQMLNH   67 (363)
Q Consensus         4 ~~~~~~~~~-~~~p~l~~a~~~---~~~~--l~~~~~~~~~~~---~~~~--vI~VTGTnGKTTT~-~~l~~iL~~   67 (363)
                      +++..+.-+ .+++..+.|+++   ++++  ..+++.....++   .+.+  +|+|| |||||++. ..|..-+.+
T Consensus       109 lViaat~d~~~n~~I~~~Ar~~f~~~i~VNvvd~pel~~f~~Pa~~~~g~~l~IaIS-T~Gksp~lA~~ir~~ie~  183 (274)
T 1kyq_A          109 IIMTCIPDHPESARIYHLCKERFGKQQLVNVADKPDLCDFYFGANLEIGDRLQILIS-TNGLSPRFGALVRDEIRN  183 (274)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHHHCTTSEEEETTCGGGBSEECCEEEEETTTEEEEEE-ESSSCHHHHHHHHHHHHH
T ss_pred             EEEEcCCChHHHHHHHHHHHHhcCCCcEEEECCCcccCeeEeeeEEEeCCCEEEEEE-CCCCCcHHHHHHHHHHHH
Confidence            455555554 567778889998   8888  777776543322   2334  99999 99999764 455555544

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=86.67  E-value=0.64  Score=40.85  Aligned_cols=32  Identities=25%  Similarity=0.455  Sum_probs=26.6

Q ss_pred             cEEEEeC---CCChHHHHHHHHHHHHhcCCCeEee
Q 017957           44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        44 ~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      ++|+|++   -.||||++..|+..|...|.++.+.
T Consensus         3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli   37 (263)
T 1hyq_A            3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIV   37 (263)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence            5777765   5689999999999999999988653

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=86.61  E-value=0.71  Score=39.37  Aligned_cols=29  Identities=31%  Similarity=0.519  Sum_probs=24.8

Q ss_pred             EEEEe---CCCChHHHHHHHHHHHHhcCCCeEe
Q 017957           45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        45 vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      +|+|+   |-.||||++..|+..|...| ++.+
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vll   33 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLL   33 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEE
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEE
Confidence            56665   67799999999999999999 8864

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=86.52  E-value=0.63  Score=41.09  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=28.1

Q ss_pred             CCCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEee
Q 017957           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        41 ~~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      ++.++|+|++.   .||||++..|+..|. .|.++.+.
T Consensus        25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vlli   61 (267)
T 3k9g_A           25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLI   61 (267)
T ss_dssp             -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEE
Confidence            46789999765   579999999999999 99988643

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=86.17  E-value=0.8  Score=39.99  Aligned_cols=31  Identities=29%  Similarity=0.382  Sum_probs=26.6

Q ss_pred             cEEEEeC---CCChHHHHHHHHHHHHhcCCCeEe
Q 017957           44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        44 ~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      ++|+|++   -.||||++..|+..|...|.++.+
T Consensus         3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll   36 (260)
T 3q9l_A            3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV   36 (260)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence            5788865   568999999999999999998864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=85.83  E-value=0.62  Score=42.15  Aligned_cols=30  Identities=33%  Similarity=0.511  Sum_probs=23.0

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHhcCCC
Q 017957           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIE   71 (363)
Q Consensus        42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~   71 (363)
                      +.++|+|||.  .||||++.+|...|...|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~   35 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVK   35 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence            4569999995  69999999999998765543

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=85.81  E-value=0.39  Score=43.27  Aligned_cols=26  Identities=23%  Similarity=0.459  Sum_probs=22.9

Q ss_pred             eCCCChHHHHHHHHHHHHhcCCCeEe
Q 017957           49 TGTNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        49 TGTnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      -|-.||||++..|+..|...|.++.+
T Consensus        45 KGGvGKTT~a~nLA~~la~~G~rVll   70 (298)
T 2oze_A           45 KGGVGKSKLSTMFAYLTDKLNLKVLM   70 (298)
T ss_dssp             SSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCchHHHHHHHHHHHHHhCCCeEEE
Confidence            35789999999999999999998864

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=84.86  E-value=1.3  Score=37.54  Aligned_cols=33  Identities=27%  Similarity=0.390  Sum_probs=26.6

Q ss_pred             CCCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeE
Q 017957           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF   73 (363)
Q Consensus        41 ~~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~   73 (363)
                      ++..+|+|.|-|  ||||+..+|..++...|..++
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g   54 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAE   54 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceE
Confidence            356799999965  899999999999987654443

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=83.49  E-value=1.1  Score=41.61  Aligned_cols=35  Identities=14%  Similarity=0.021  Sum_probs=30.3

Q ss_pred             CCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEeec
Q 017957           42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        42 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      +.+.|.|+||   -|||||+..|.+.|++.|+++...+
T Consensus       151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~  188 (349)
T 2obn_A          151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLA  188 (349)
T ss_dssp             SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEe
Confidence            3578999997   5999999999999999999986543

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=83.46  E-value=1.3  Score=41.02  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=30.3

Q ss_pred             CCcEEEEe---CCCChHHHHHHHHHHHHhcCCCeEeecc
Q 017957           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGGN   77 (363)
Q Consensus        42 ~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~gn   77 (363)
                      +.++|.|+   |-.||||++.-++..|...|.++.+...
T Consensus        24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~   62 (349)
T 3ug7_A           24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVST   62 (349)
T ss_dssp             CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred             CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            56788887   5678999999999999999999876553

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=82.61  E-value=1.3  Score=42.50  Aligned_cols=34  Identities=18%  Similarity=0.210  Sum_probs=28.8

Q ss_pred             CcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEeec
Q 017957           43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        43 ~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      ..+|.++|.+  |||||+.-|+..|...|.++.+.+
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~  132 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA  132 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            5689999954  699999999999999999886543

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=82.22  E-value=1.9  Score=35.70  Aligned_cols=35  Identities=26%  Similarity=0.207  Sum_probs=28.5

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeec
Q 017957           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      ..++|+|+|.  .||||+...|...|...|.+++...
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~   41 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK   41 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence            3579999996  5899999999888988888875433

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=81.97  E-value=1.4  Score=37.16  Aligned_cols=31  Identities=26%  Similarity=0.258  Sum_probs=26.9

Q ss_pred             CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017957           42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA   72 (363)
Q Consensus        42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~   72 (363)
                      +..+|.|+|  ..||||.+.+|+.-|...|+.+
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v   40 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA   40 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence            456899999  5899999999999998888766

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=81.78  E-value=1.7  Score=39.44  Aligned_cols=35  Identities=20%  Similarity=0.410  Sum_probs=27.6

Q ss_pred             CCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEeec
Q 017957           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      +..+|++.|-|  |||||...|+..+...+.++...|
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g  135 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA  135 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            45688999866  899999999999997765665444

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=81.29  E-value=1.4  Score=40.40  Aligned_cols=34  Identities=12%  Similarity=0.082  Sum_probs=27.5

Q ss_pred             CcEEEEe---CCCChHHHHHHHHHHHHhcCCCeEeec
Q 017957           43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        43 ~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      .++|.|+   |-.||||++..++..|.+.|.++.+..
T Consensus        18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD   54 (329)
T 2woo_A           18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS   54 (329)
T ss_dssp             TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred             CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence            3455555   568999999999999999999997644

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=81.05  E-value=2  Score=40.46  Aligned_cols=34  Identities=9%  Similarity=0.199  Sum_probs=27.7

Q ss_pred             CCCcEEEEe---CCCChHHHHHHHHHHHHh------cCCCeEe
Q 017957           41 RSIKILAVT---GTNGKSTVVTFVGQMLNH------LGIEAFV   74 (363)
Q Consensus        41 ~~~~vI~VT---GTnGKTTT~~~l~~iL~~------~g~~~~~   74 (363)
                      ...++|+|+   |-.||||++..|+..|..      .|.++.+
T Consensus       106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVll  148 (398)
T 3ez2_A          106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILV  148 (398)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEE
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEE
Confidence            357899998   567899999999999984      6777754

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=81.05  E-value=1  Score=42.63  Aligned_cols=34  Identities=18%  Similarity=0.258  Sum_probs=22.0

Q ss_pred             CCCcEEEEe---CCCChHHHHHHHHHHHH------hcCCCeEe
Q 017957           41 RSIKILAVT---GTNGKSTVVTFVGQMLN------HLGIEAFV   74 (363)
Q Consensus        41 ~~~~vI~VT---GTnGKTTT~~~l~~iL~------~~g~~~~~   74 (363)
                      ...++|+|+   |-.|||||+..|+..|.      ..|.++.+
T Consensus       109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVll  151 (403)
T 3ez9_A          109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILV  151 (403)
T ss_dssp             CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEE
T ss_pred             CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEE
Confidence            367899999   67799999999999998      56777643

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=80.49  E-value=1.7  Score=40.71  Aligned_cols=36  Identities=19%  Similarity=0.210  Sum_probs=29.9

Q ss_pred             CCCcEEEEeC---CCChHHHHHHHHHHHHhcCCCeEeec
Q 017957           41 RSIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        41 ~~~~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      ++.++|+|++   -.||||++.-|+..|...|.++.+..
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD  179 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN  179 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence            3578999986   45799999999999999998886543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	363
d1p3da3	215	c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine	8e-17
d1gg4a4	214	c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl	9e-16
d2jfga3	204	c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine	3e-13
d1e8ca3	234	c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptid	9e-13
d1j6ua3	207	c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine l	1e-10
d2jfga2	140	c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanin	1e-08
d2gc6a2	296	c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {	1e-04
d1o5za2	296	c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase	4e-04

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Length = 215

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

 Score = 76.0 bits (186), Expect = 8e-17
 Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 15/213 (7%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
           R    +AV GT+GK+T    +  +     ++                      +     +
Sbjct: 10  RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNG-------GLVKSAGKNAHLGASR 62

Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG 159
             + E         +    P VSVV N+ PDH++ ++   +    T      ++    L 
Sbjct: 63  YLIAEADESDASFLH--LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLA 120

Query: 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH---NMK 216
           ++   +  L E +      +   G         E    +       V+          + 
Sbjct: 121 VMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLN 180

Query: 217 VMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
           V G+HN  N  AA+A     G+     +EAL  
Sbjct: 181 VPGKHNALNATAALAVAKEEGIANEAILEALAD 213

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

 Score = 73.2 bits (178), Expect = 9e-16
 Identities = 41/213 (19%), Positives = 70/213 (32%), Gaps = 13/213 (6%)

Query: 44  KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
           +++A+TG++GK++V      +L+  G   +  GNL N +          P          
Sbjct: 3   RVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELG 62

Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
                           P  ++V NL   HLE   ++   A  K  +FS +    + ++  
Sbjct: 63  ANHQGEIA-WTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNA 121

Query: 164 GNQHLNE---AIKGHRFNLAWIGA----FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
            N         I   +       A    F    I   +    F +        + L    
Sbjct: 122 DNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLL---P 178

Query: 217 VMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
           + GRHN  N  AA A    +G  +      L +
Sbjct: 179 LPGRHNIANALAAAALSMSVGATLDAIKAGLAN 211

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 204

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 65.5 bits (158), Expect = 3e-13
 Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 19/219 (8%)

Query: 31  ELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI 90
           +++   +       I+A+TG+NGKSTV T VG+M    G+   VGGN             
Sbjct: 1   DIELFCREAQ--APIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN---------IGLP 49

Query: 91  ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF 150
           AL     + ++ V+E+SS+Q+E  +       +++             ++ Y   K  ++
Sbjct: 50  ALMLLDDECELYVLELSSFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIY 109

Query: 151 SHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL 210
            +        +   +  L   I+G        G   G       +  ++       V   
Sbjct: 110 ENAKVC----VVNADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVL-- 163

Query: 211 QLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
            +  MK+ G+HNY N  AA+A     GL     ++AL +
Sbjct: 164 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTT 202

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 234

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

 Score = 64.8 bits (156), Expect = 9e-13
 Identities = 44/229 (19%), Positives = 73/229 (31%), Gaps = 22/229 (9%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA------------AFH 88
            +++++ VTGTNGK+T    + Q    LG  + V G +GN L                  
Sbjct: 3   DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQ 62

Query: 89  CIALPSSKPKFQVAVVEVSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
                          +EVSS+ + +          SV  NL+ DHL+ H  M++Y   K 
Sbjct: 63  HELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKW 122

Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
            L+S     +  +            K        +              A+         
Sbjct: 123 LLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGA 182

Query: 208 SQLQLHN-------MKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
           +     +         +MG  N  N   A+A L  LG  +   ++    
Sbjct: 183 TIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAAR 231

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Length = 207

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

 Score = 58.2 bits (139), Expect = 1e-10
 Identities = 39/208 (18%), Positives = 61/208 (29%), Gaps = 21/208 (10%)

Query: 44  KILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQV 101
           +  AVTGT+GK+T    V  +L HL      F+GG + +                     
Sbjct: 15  EEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKGN----------- 63

Query: 102 AVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161
             V     + E     F P   ++ N   DHLE +        +     S   +  +   
Sbjct: 64  GPVVYELDESEEFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVVTFA 123

Query: 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
                     +        +           +             +       +KV G H
Sbjct: 124 EDELTSHLGDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLEL------KLKVPGFH 177

Query: 222 NYHN--AAVAALSVLGLDIGVDVEALNS 247
           N  N  A +A    LG D+   +EAL  
Sbjct: 178 NVLNALAVIALFDSLGYDLAPVLEALEE 205

>d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 140

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
           PHR ++V  +  GV W++DSKATN+ +T   L  L     + LL G   
Sbjct: 3   PHRFEVV-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDG 50

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} Length = 296

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 17/137 (12%), Positives = 38/137 (27%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
           +  + + VTGTNGK +    +  +L   G+   +                  P       
Sbjct: 37  QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMIDHEPIPDAALV 96

Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
            AV  V +    +  +     V+    +T       +  +              ++   +
Sbjct: 97  NAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVI 156

Query: 161 LPFGNQHLNEAIKGHRF 177
            P  +     A+   + 
Sbjct: 157 TPVVSVLTEVALDHQKL 173

>d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]} Length = 296

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 30/251 (11%), Positives = 62/251 (24%), Gaps = 41/251 (16%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP-------LSEAAFHCIALP 93
              K + + GTNGK +V   V  +L   G       +           L+E       + 
Sbjct: 41  LEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVV 100

Query: 94  SSKPKFQVAVVEVSSYQMEIPNKYFCPTV---------SVVLNLTPDHLERHKTMKNYAL 144
                 +  + E+   ++  P+ +   T          +V + +    L       N   
Sbjct: 101 KIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVVF 160

Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR---FNLAWIGAFPGVKIDTEAKTASFEV 201
             C     +       L +  + +     G       L             E        
Sbjct: 161 PLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDVARKKSS 220

Query: 202 PAVGVVSQLQLHNMKVM----------------------GRHNYHNAAVAALSVLGLDIG 239
               +     +    +                       G H   NA VA  ++    + 
Sbjct: 221 RMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEATGLP 280

Query: 240 VDVEALNSTIE 250
           +  +A+   ++
Sbjct: 281 LSEKAIREGLK 291

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	363
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	100.0
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	100.0
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	100.0
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	100.0
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	100.0
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	99.98
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	99.97
d1gg4a1	135	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	99.6
d2jfga2	140	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	99.43
d1e8ca2	160	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	98.85
d1j6ua2	151	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	98.53
d1o5za1	137	Folylpolyglutamate synthetase, C-terminal domain {	98.47
d2gc6a1	129	Folylpolyglutamate synthetase, C-terminal domain {	98.44
d1p3da2	152	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.68
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.05
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	95.52
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.2
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.9
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	93.27
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	92.77
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	92.55
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	91.99
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	90.75
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	90.68
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	90.34
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	90.09
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	89.32
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	88.87
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	88.74
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	86.61
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	86.42
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	85.68
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	84.71
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	83.87
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	83.87
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	82.65
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	81.61
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	81.37
d1ls1a2	207	GTPase domain of the signal sequence recognition p	80.72
d1vmaa2	213	GTPase domain of the signal recognition particle r	80.59

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=1.6e-38  Score=281.01  Aligned_cols=206  Identities=18%  Similarity=0.210  Sum_probs=158.9

Q ss_pred             HHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEe-ecccchhhhhhhhhcccCCCCCCCCcEEEEEeCccc
Q 017957           32 LDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV-GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQ  110 (363)
Q Consensus        32 ~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~-~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~  110 (363)
                      .|++.+.+ +..++||||||||||||+.||+++|+..|+++.. .|++..++.....        ..+.+++|+|+|+++
T Consensus         2 ~e~L~~~~-r~~~~I~ITGTnGKTTt~~~l~~iL~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~v~E~~~~~   72 (215)
T d1p3da3           2 AQMLAEIM-RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAH--------LGASRYLIAEADESD   72 (215)
T ss_dssp             HHHHHHHH-HTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTTTEEEE--------CCSSSEEEEECCCTT
T ss_pred             HHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCceEeeCceeccCccccc--------cCCCceEEEEcCCcc
Confidence            35555554 3568999999999999999999999999988764 3444444432211        245688999999887


Q ss_pred             ccccCccccccEEEEeCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCccEEEeccCCCce
Q 017957          111 MEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVK  189 (363)
Q Consensus       111 l~~~~~~~~p~i~viTnI~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~  189 (363)
                      .....  ++||++|||||++||+|+| +++|+|+++|.++++.+++++.+|+|.||+....+......++++||...+..
T Consensus        73 ~~~~~--~~p~~~viTNi~~dHld~~~~s~e~~~~~K~~i~~~~~~~g~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~  150 (215)
T d1p3da3          73 ASFLH--LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQAD  150 (215)
T ss_dssp             SGGGG--CCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEEEETTCHHHHHHHHHHCSEEEEEESSTTCS
T ss_pred             cccee--EcCCEEEEecccccccccccCCHHHHHHHHHHHHhcCCCCCEEEEeCcchHHHHHHHhcCCceEEEccccccc
Confidence            65443  7999999999999999988 69999999999999999999999999999999998877777889998754321


Q ss_pred             ec-----cccccce-EEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 017957          190 ID-----TEAKTAS-FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR  253 (363)
Q Consensus       190 ~~-----~~~~~~~-~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~  253 (363)
                      ..     ....... ..........   .+.++++|+||++|+++|+  ++|..+|+++++|+++|++|+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~N~laAi--a~a~~lGi~~~~i~~~L~~Fk  215 (215)
T d1p3da3         151 YRIEDYEQTGFQGHYTVICPNNERI---NVLLNVPGKHNALNATAAL--AVAKEEGIANEAILEALADFQ  215 (215)
T ss_dssp             EEEEEEEEETTEEEEEEECTTCCEE---EEEESSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHTCC
T ss_pred             cccccccccccccccccccccccee---eEEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcC
Confidence            11     1111111 1122222222   2478999999999999999  899999999999999999986

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-38  Score=276.95  Aligned_cols=202  Identities=26%  Similarity=0.396  Sum_probs=161.6

Q ss_pred             HHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhhcccCCCCCCCCcEEEEEeCccc
Q 017957           31 ELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQ  110 (363)
Q Consensus        31 ~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~  110 (363)
                      ++|++.+..  +.|+|+||||||||||++||+++|+..|.++++.|++|.|.....         ..+.|++|+|+|+++
T Consensus         1 ~~~lf~~~~--~~~vI~VTGT~GKTTt~~~l~~iL~~~g~~~~~~~~~~~~~~~~~---------~~~~~~~V~E~~~~~   69 (204)
T d2jfga3           1 DIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLL---------DDECELYVLELSSFQ   69 (204)
T ss_dssp             HHHHHHHHC--CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEETTSSCGGGGC---------CTTCCEEEEECCHHH
T ss_pred             CHHHHhhcC--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCcccCCcccccccccc---------cccceEEEEeecccc
Confidence            578888877  689999999999999999999999999999999999999976543         457799999999876


Q ss_pred             ccccCccccccEEEEeCCChhhhccCCC-HHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCccEEEeccCC-Cc
Q 017957          111 MEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP-GV  188 (363)
Q Consensus       111 l~~~~~~~~p~i~viTnI~~dHl~~~gt-~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~-~~  188 (363)
                      ...... ++|+++|||||++||+|+|++ ++.+...|..+++   +.+.+|+|.||+....+. ....++++||... ++
T Consensus        70 ~~~~~~-~~p~i~viTNi~~dHld~~~~~~~~~~~~~~~i~~---~~~~~v~n~dd~~~~~~~-~~~~~~i~~~~~~~~~  144 (204)
T d2jfga3          70 LETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE---NAKVCVVNADDALTMPIR-GADERCVSFGVNMGDY  144 (204)
T ss_dssp             HHTCCC-CCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGT---TCSEEEEETTCGGGSCTT-CCCTTEEEECSSSSSE
T ss_pred             cccccc-cccccceeeeeccccccccccHHHHHHHHHHhhhc---cccceeehhhhHHHHHHH-ccCCceEEeeccccch
Confidence            555544 899999999999999999995 8999999999988   477899999999876543 4456788888642 22


Q ss_pred             eeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 017957          189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR  253 (363)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~  253 (363)
                      .......  ...+...+. ..+....++++|+||++|+++|+  ++|..+|+++++|+++|++|.
T Consensus       145 ~~~~~~~--~~~~~~~~~-~~~~~~~~~l~G~hn~~N~laAi--a~a~~lGi~~~~i~~~L~~Ft  204 (204)
T d2jfga3         145 HLNHQQG--ETWLRVKGE-KVLNVKEMKLSGQHNYTNALAAL--ALADAAGLPRASSLKALTTFT  204 (204)
T ss_dssp             EEEEETT--EEEEEETTE-EEEEGGGCSCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHHCC
T ss_pred             hhccccc--ccceeecCC-ccccccccCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcC
Confidence            2221111  111111221 22334578999999999999999  899999999999999999984

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.1e-37  Score=273.50  Aligned_cols=208  Identities=22%  Similarity=0.216  Sum_probs=154.1

Q ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhhc-ccCC-----------CCCCCCcEEEEEeCc
Q 017957           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALP-----------SSKPKFQVAVVEVSS  108 (363)
Q Consensus        41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~~-~~~~-----------~~~~~~d~~VlE~g~  108 (363)
                      ++.++|+||||||||||++||+++|+..|.++++.||+|.+........ .+++           ....+++++++|+++
T Consensus         3 ~~~~vI~ITGT~GKTTt~~~l~~iL~~~g~~~~~~gt~g~~~~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~~~~le~ss   82 (234)
T d1e8ca3           3 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSS   82 (234)
T ss_dssp             GSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             cCCeEEEEECCCcHHHHHHHHHHHHHHCCCCeEEECccccCcCccccccccccccchhHHHHHHHHhhcCCceeeeccCc
Confidence            4679999999999999999999999999999999998877654322110 0000           014567899999997


Q ss_pred             cc-ccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCccEEE-eccCC
Q 017957          109 YQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAW-IGAFP  186 (363)
Q Consensus       109 ~~-l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~-~~~~~  186 (363)
                      .+ .......++|+++|||||++||+|+|||+|+|+++|.++++.. +.+.+|+|.|||....+.+........ ++...
T Consensus        83 ~g~~~~~~~~~~p~i~vitNi~~dHld~~~~~e~~~~~K~~i~~~~-~~~~~iin~Dd~~~~~~~~~~~~~~~~~~~~~~  161 (234)
T d1e8ca3          83 HGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEH-HCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI  161 (234)
T ss_dssp             HHHHTTTTTTCBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHTS-BCCEEEEETTSHHHHHHHTTCTTCEEEESSSCC
T ss_pred             cchhhhhhcccccceEEEeeccccchhhhccccceehhhhcccccc-ccceeEEecccccchhhhhhhccceeeeecccc
Confidence            54 3333445899999999999999999999999999999999864 567899999999999887655443322 22111


Q ss_pred             --Cc---ee-----ccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 017957          187 --GV---KI-----DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT  254 (363)
Q Consensus       187 --~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~  254 (363)
                        +.   .+     .....+..+.+...+....   +.++++|.||++|+++|+  ++|..+|+++++|+++|++|+|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~l~G~hni~N~laAi--ava~~lGi~~~~i~~~l~~fkP  234 (234)
T d1e8ca3         162 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGE---IESHLMGAFNVSNLLLAL--ATLLALGYPLADLLKTAARLQP  234 (234)
T ss_dssp             CTTTCSEEEEEEEEEECSSCEEEEEEETTCCEE---EEECSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHGGGCCC
T ss_pred             ccccccccccccccccccccceeeeecCCceEE---EEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCC
Confidence              10   01     0111122333333332232   478999999999999999  8999999999999999999986

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-36  Score=267.30  Aligned_cols=203  Identities=20%  Similarity=0.307  Sum_probs=151.2

Q ss_pred             CcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhhcccCCCCCCCCcEEEEEeCccccc---ccCcccc
Q 017957           43 IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME---IPNKYFC  119 (363)
Q Consensus        43 ~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~---~~~~~~~  119 (363)
                      .|+|+||||||||||++||+++|+..|.++++.||++.++......    .....+.++.++|+++.+..   .....+.
T Consensus         2 ~kvI~VTGTnGKTTt~~mi~~iL~~~g~~~~~~g~~n~~~g~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~   77 (214)
T d1gg4a4           2 ARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTL----LRLTPEYDYAVIELGANHQGEIAWTVSLTR   77 (214)
T ss_dssp             CEEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCSTTHHHHHH----TTCCTTCSEEEEECCCSSSSHHHHHHHHHC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHHhCCCCEEEeCcccCccccchhh----hhcccccccchhhhhhhhcccccccccccC
Confidence            4799999999999999999999999999999999987665432111    01245678899999965332   2233478


Q ss_pred             ccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcC-CccEEEeccCC---Ccee---cc
Q 017957          120 PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFP---GVKI---DT  192 (363)
Q Consensus       120 p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~---~~~~---~~  192 (363)
                      |+++|+|||++||+|+|+++|+|+++|.++++.+++++.+|+|.||+....+.... ..++.+|+...   ++..   ..
T Consensus        78 p~~~viTNi~~dHld~~~~~~~~~~~k~~~~~~~~~~g~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~ad~~~~~~~~  157 (214)
T d1gg4a4          78 PEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHV  157 (214)
T ss_dssp             CSEEEECCCC--------CHHHHHHHHHGGGGGCCTTCEEEEETTBCCHHHHHHHHTTSEEEEECSSCTTCSBEEEEEEE
T ss_pred             chheeeehhccccccccccHHHHHhhhhhHhhhhccCCccccccccHHHHHHHHHhcCCceeeeccCCCCcceeeeeEEE
Confidence            99999999999999999999999999999999999999999999999988776543 44567777642   2221   11


Q ss_pred             ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 017957          193 EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT  254 (363)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~  254 (363)
                      ...+..+.+...+..+.   +.++++|.||++|+++|+  +++..+|+++++|+++|++|+.
T Consensus       158 ~~~~~~~~i~~~~~~~~---~~l~l~G~hn~~NalaAi--a~~~~lgi~~~~i~~~l~~fk~  214 (214)
T d1gg4a4         158 TSHGTEFTLQTPTGSVD---VLLPLPGRHNIANALAAA--ALSMSVGATLDAIKAGLANLKA  214 (214)
T ss_dssp             CSSSEEEEEEETTEEEE---EEECSSSTHHHHHHHHHH--HHHHHTTCCHHHHHHHHTTCCC
T ss_pred             eCCceEEEEEECCceEE---EEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCC
Confidence            22334455544444443   478999999999999999  8999999999999999999973

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4e-34  Score=251.13  Aligned_cols=189  Identities=23%  Similarity=0.231  Sum_probs=140.8

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeE-eecccchhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccc
Q 017957           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCP  120 (363)
Q Consensus        42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~-~~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p  120 (363)
                      +.++||||||||||||++||+++|+..|.++. ..|+++.++.....        ..+.+++|+|+++.+..  ...++|
T Consensus        13 ~~~~iAITGTnGKTTt~~~l~~iL~~~g~~~~~~~g~~~~~~~~~~~--------~~~~~~~v~e~~e~~~~--~~~~~p   82 (207)
T d1j6ua3          13 KKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNY--------EKGNGPVVYELDESEEF--FSEFSP   82 (207)
T ss_dssp             CCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTTSTTSSE--------ECCSSCEEEEECTTSGG--GGGCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCccccccchhc--------cCCCcceeEEeeechhh--hhhhhh
Confidence            56899999999999999999999999998753 45667766654332        34557799999976522  223899


Q ss_pred             cEEEEeCCChhhhccCC-CHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCccEEEeccCCC-ceecc---ccc
Q 017957          121 TVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG-VKIDT---EAK  195 (363)
Q Consensus       121 ~i~viTnI~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~  195 (363)
                      +++|||||++||+|+|| ++|.|+++|.++++   ..+.+|+|.||+....+.      .++++.... +.+..   ...
T Consensus        83 ~iaviTNI~~dHLd~~~~~~~~~~~~k~~~~~---~~~~~i~n~dd~~~~~~~------~~~~g~~~~~~~~~~~~~~~~  153 (207)
T d1j6ua3          83 NYLIITNARGDHLENYGNSLTRYRSAFEKISR---NTDLVVTFAEDELTSHLG------DVTFGVKKGTYTLEMRSASRA  153 (207)
T ss_dssp             SEEEECCCCCCCGGGGTTCHHHHHHHHHHHHH---TCSEEEEETTCTTTGGGC------SEEECSSSSSEEEEEEEECSS
T ss_pred             ceeeeeechhhhhhccCccccccccccchhhh---hccccccccccccccccc------ccccccccccccccccccccc
Confidence            99999999999999999 79999999999987   478899999998765442      234443221 11111   011


Q ss_pred             cceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 017957          196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR  253 (363)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~  253 (363)
                      ...+.....+...  ..+.++++|.||++|+++|+  +++..+|++.++|+++|++|+
T Consensus       154 ~~~~~~~~~~~~~--~~~~l~l~G~hn~~NalaAi--ava~~lgi~~~~i~~~L~~FK  207 (207)
T d1j6ua3         154 EQKAMVEKNGKRY--LELKLKVPGFHNVLNALAVI--ALFDSLGYDLAPVLEALEEFR  207 (207)
T ss_dssp             CEEEEEEETTEEE--EEEEESSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHHCC
T ss_pred             cccccccccCcEE--EEEEeCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcC
Confidence            1122222233221  23578999999999999999  899999999999999999986

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.97  E-value=1.1e-31  Score=248.30  Aligned_cols=202  Identities=16%  Similarity=0.144  Sum_probs=146.1

Q ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc------------cchhhhhhhhhc--------------ccCC-
Q 017957           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHC--------------IALP-   93 (363)
Q Consensus        41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn------------ig~p~~~~~~~~--------------~~~~-   93 (363)
                      ++.|+||||||||||||++||++||+++|++++++++            .|.+++...+..              .... 
T Consensus        37 ~~lkvI~VTGTNGKtST~~~i~~IL~~~G~kvG~~tSP~~~~~~e~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~  116 (296)
T d2gc6a2          37 QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADF  116 (296)
T ss_dssp             GSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             hhCCEEEEeccCcHHHHHHHHHHHHHhcCCceeeeecccccchhhhhcccccCCcHHHHHHHHHHHHHHHHhHHhhccCC
Confidence            4789999999999999999999999999999987665            233333221110              0000 


Q ss_pred             ---------------CCCCCCcEEEEEeCc-ccccccCccccccEEEEeCCChhhhccCC-CHHHHHHHHHHhcccCCCC
Q 017957           94 ---------------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNT  156 (363)
Q Consensus        94 ---------------~~~~~~d~~VlE~g~-~~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~K~~i~~~~~~~  156 (363)
                                     ..+...|++++|+|. ++++.++. ++|+++|+|||+.||++++| |+|+|+.+|++|++   ++
T Consensus       117 ~~~~f~~~~~~~~~~~~~~~~d~~i~e~g~g~~~d~~~~-~~~~~~viTni~~dH~~~lg~tle~Ia~~K~~i~k---~~  192 (296)
T d2gc6a2         117 NVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNV-ITPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIK---RG  192 (296)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCS-CCCSEEEECCCCSTTHHHHCSSHHHHHHHHHTTCC---TT
T ss_pred             CccHHHHHHHHHHHHHHHhcchhhhhhhHHHHhhhhhhc-ccceeecccccchHHHHhhhhHHHHHHHhhhcccc---cc
Confidence                           124567999999996 57787776 89999999999999999998 99999999999997   57


Q ss_pred             cEEEEeCCChhHHHHH----hcCCccEEEeccCCCceecc---ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHH
Q 017957          157 KLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA  229 (363)
Q Consensus       157 ~~~v~n~dd~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A  229 (363)
                      +.+|+..+++......    .+...+.+.++.  ++.+..   ...+..+.+...+.  .+..+.++|+|+||++|+++|
T Consensus       193 ~~~v~~~~~~~~~~~i~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~L~G~hn~~Na~~A  268 (296)
T d2gc6a2         193 IPVVTGNLVPDAAAVVAAKVATTGSQWLRFDR--DFSVPKAKLHGWGQRFTYEDQDG--RISDLEVPLVGDYQQRNMAIA  268 (296)
T ss_dssp             CCEEECCCCHHHHHHHHHHHHHHTCCEEEBTT--TEEEEEEEECSSSEEEEEEETTE--EEEEEEESCCSHHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHHhhCCcccccCc--ceeeeccccccCCceEEEEcCCC--ccCcCCCCCCcHHHHHHHHHH
Confidence            8888877777655443    233445666654  333221   11223344433322  222357899999999999999


Q ss_pred             HHHHHHHHcC------CCHHHHHHHhhcC
Q 017957          230 ALSVLGLDIG------VDVEALNSTIEIL  252 (363)
Q Consensus       230 ~~~a~~~~lg------i~~~~i~~~l~~~  252 (363)
                      +  +++..++      ++.+.|++||++.
T Consensus       269 i--a~~~~l~~~~~~~i~~e~I~~GL~~~  295 (296)
T d2gc6a2         269 I--QTAKVYAKQTEWPLTPQNIRQGLAAS  295 (296)
T ss_dssp             H--HHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred             H--HHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence            9  6776654      8999999999863

>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=5.9e-16  Score=124.96  Aligned_cols=86  Identities=17%  Similarity=0.111  Sum_probs=73.5

Q ss_pred             CCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc--CCcEEEEEcCCCCCCCCCCccchhhhhhhcc--cCcEEEEE
Q 017957          255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITV  330 (363)
Q Consensus       255 ~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~--~~~~vi~~  330 (363)
                      +|||++.+. ..+|.++|||+||+||+||++||+.+.  ++|+++|+|+|.|+|+.+. ..|+++++.++  .+|.++++
T Consensus         1 vpgR~~~~~-~~~g~~iIdDsYNAnP~Sm~aAl~~l~~~~~~ki~vLGdM~ELG~~s~-~~H~~l~~~~~~~~id~v~~v   78 (135)
T d1gg4a1           1 VPGRLFPIQ-LAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESE-ACHVQVGEAAKAAGIDRVLSV   78 (135)
T ss_dssp             CTTSSEEEE-EETTEEEEECCSCCCHHHHHHHHHHHHHSSSEEEEEECCCCCCTTHHH-HHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCCCeEEE-cCCCcEEEecCCcCCHHHHHHHHHHhhccCCCceEEEcccccchhhHH-HHHHHHHHHHHhhcCCeEeee
Confidence            589999997 468899999999999999999999874  4578999999999999874 56999999875  48999999


Q ss_pred             cccchHHHHhhCC
Q 017957          331 CALLFLKIVIQFP  343 (363)
Q Consensus       331 G~~~~~~~~~~~~  343 (363)
                      |+.+ +.+.....
T Consensus        79 G~~~-~~~~~~~~   90 (135)
T d1gg4a1          79 GKQS-HAISTASG   90 (135)
T ss_dssp             SSST-HHHHHHTT
T ss_pred             chHH-HHHHHhcC
Confidence            9987 66665543

>d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=2.7e-13  Score=109.53  Aligned_cols=81  Identities=31%  Similarity=0.432  Sum_probs=68.6

Q ss_pred             CCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc-CCcEEEEEcCCCCCCCCCCccchhhhhhhcc-cCcEEEEEc
Q 017957          254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITVC  331 (363)
Q Consensus       254 ~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~-~~~~vi~~G  331 (363)
                      ++|||||.+. ..+|++|||||+||||+|+.+|++.++ .++++||+||..+..+      +.++.+.++ .++.++++|
T Consensus         1 GLpHR~e~v~-~~~gv~fiNDSKaTn~~a~~~Al~~~~~~~~iiLI~GG~~K~~d------~~~L~~~i~~~~~~v~~~G   73 (140)
T d2jfga2           1 GLPHRFEVVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSAD------FSPLARYLNGDNVRLYCFG   73 (140)
T ss_dssp             CCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHTTCCCSSCEEEEEESBCTTCC------CGGGGGGSCSSSEEEEEES
T ss_pred             CCCcceEEEE-EcCCEEEEECCccccHHHHHHHHhhhhccCceEEEeeccccccc------hhhhhhhhhccchhhhhhc
Confidence            5899999997 689999999999999999999999996 4679999999998754      567877775 588999999


Q ss_pred             ccchHHHHhhC
Q 017957          332 ALLFLKIVIQF  342 (363)
Q Consensus       332 ~~~~~~~~~~~  342 (363)
                      +.. ..+...+
T Consensus        74 ~~~-~~i~~~~   83 (140)
T d2jfga2          74 RDG-AQLAALR   83 (140)
T ss_dssp             TTH-HHHHTTS
T ss_pred             chh-HHHHHHH
Confidence            996 4555443

>d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=2.9e-09  Score=87.46  Aligned_cols=71  Identities=15%  Similarity=0.020  Sum_probs=55.2

Q ss_pred             CCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchhhhhhhcc-cCcEEEEE
Q 017957          255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITV  330 (363)
Q Consensus       255 ~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~-~~~~vi~~  330 (363)
                      +|||||++. ..+++++|+|+ ||||+|++++++.++   .+++++|+|..+++...    ....+++.+. .+|.+|++
T Consensus         1 V~GR~E~i~-~~~~p~VIvDy-AHNp~ai~~l~~~~k~~~~~~~~~V~g~~gdr~~~----~~~~~~~~~~~~~D~vi~t   74 (160)
T d1e8ca2           1 VCGRMEVFT-APGKPTVVVDY-AHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKG----KRPLMGAIAEEFADVAVVT   74 (160)
T ss_dssp             CTTSSEEEC-CTTSCEEEEEC-CCSHHHHHHHHHHHHHTCSSCEEEEECCCSSSCST----HHHHHHHHHHHHCSEEEEC
T ss_pred             CCCCcEEEe-cCCCCEEEEEC-CCCHHHHHHHHHHhhhhcccccceeeeehhcccch----hhhhhhccchhccchhhhc
Confidence            699999996 45678899995 999999999988763   56899999988776432    2445666665 48999988


Q ss_pred             c
Q 017957          331 C  331 (363)
Q Consensus       331 G  331 (363)
                      -
T Consensus        75 ~   75 (160)
T d1e8ca2          75 D   75 (160)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.53  E-value=6.7e-08  Score=78.25  Aligned_cols=74  Identities=14%  Similarity=0.080  Sum_probs=52.0

Q ss_pred             CCCCeeEEEEe-ecCCEEEEEcCCCCCHHHHHHHHhcc----cCCcEEEEEcCCCCCCCCCCccchhhhhhhcccCcEEE
Q 017957          254 TPPHRMQIVHR-DIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVI  328 (363)
Q Consensus       254 ~~~gR~e~~~~-~~~~~~iidD~~a~np~s~~~al~~~----~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~~~~~vi  328 (363)
                      |++||||++.. ..+++++|||+ ||||.+++++|+++    +++++++|+++....-.   .....++...++.+|.+|
T Consensus         1 Gv~rR~e~i~~~~~~~~~vidDy-AH~P~~i~a~l~a~r~~~~~~~ii~vf~p~~~~r~---~~~~~~~~~~~~~aD~vi   76 (151)
T d1j6ua2           1 GVHRRFSIAFHDPETNIYVIDDY-AHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRL---EREDGNFAKALQLADEVV   76 (151)
T ss_dssp             CCTTSSEEEEEETTTTEEEEEEC-CCSHHHHHHHHHHHHHHCSSSEEEEEECCBC-----------CHHHHHHTTSSEEE
T ss_pred             CCCCCeEEEEecCCCCEEEEEEC-CCCHHHHHHHHHHhhhhhcccceeeeeeccccchh---hHHHHHHHHHhhccccee
Confidence            57999999842 35679999995 99999999999876    35678888875432211   123556777778899999


Q ss_pred             EEc
Q 017957          329 TVC  331 (363)
Q Consensus       329 ~~G  331 (363)
                      ++-
T Consensus        77 lt~   79 (151)
T d1j6ua2          77 VTE   79 (151)
T ss_dssp             ECC
T ss_pred             eec
Confidence            874

>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: Folylpolyglutamate synthetase, C-terminal domain
domain: Folylpolyglutamate synthetase, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=2.1e-07  Score=73.86  Aligned_cols=67  Identities=19%  Similarity=0.238  Sum_probs=52.6

Q ss_pred             CeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCCCCCCCCCCccchhhhhhhcc-cCcEEEEEc
Q 017957          257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITVC  331 (363)
Q Consensus       257 gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~-~~~~vi~~G  331 (363)
                      ||||++.  .++..+|.|+ ||||+|++++++.++    ++++++|+|.+.++       +...+.+.+. ..+.++++.
T Consensus         1 GR~e~i~--~~~~~iilD~-AHN~~a~~~l~~~l~~~~~~~~~~~i~g~~~dk-------d~~~~l~~l~~~~~~i~~~~   70 (137)
T d1o5za1           1 GRFEILE--KNGKMYILDG-AHNPHGAESLVRSLKLYFNGEPLSLVIGILDDK-------NREDILRKYTGIFERVIVTR   70 (137)
T ss_dssp             TSSEEEE--ETTEEEEECC-CCSHHHHHHHHHHHHHHCTTCCEEEEECCCTTS-------CHHHHHGGGTTTCSEEEECC
T ss_pred             CCcEEEc--CCCCEEEEEC-CCCHHHHHHHHHHHHhhhccccceeeecccccc-------cHHHHHHHHHhhcceeeeee
Confidence            8999995  4677888895 999999999888763    56789999987764       4667777765 478888886


Q ss_pred             cc
Q 017957          332 AL  333 (363)
Q Consensus       332 ~~  333 (363)
                      ..
T Consensus        71 ~~   72 (137)
T d1o5za1          71 VP   72 (137)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: Folylpolyglutamate synthetase, C-terminal domain
domain: Folylpolyglutamate synthetase, C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=98.44  E-value=4.9e-08  Score=76.68  Aligned_cols=65  Identities=20%  Similarity=0.227  Sum_probs=45.8

Q ss_pred             CCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchhhhhhhcc-cCcEEEEEc
Q 017957          256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITVC  331 (363)
Q Consensus       256 ~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~-~~~~vi~~G  331 (363)
                      |||||++.   ++.++|.|+ ||||+|++.+++.++   .+++++|+|.+.++       +...+.+.+. ..+.++++-
T Consensus         2 PGR~e~i~---~~~~iilD~-AHN~~~~~~l~~~l~~~~~~~~~~v~g~~~dK-------d~~~~l~~l~~~~~~~~~~~   70 (129)
T d2gc6a1           2 PARLEKIS---DTPLIVIDG-AHNPDGINGLITALKQLFSQPITVIAGILADK-------DYAAMADRLTAAFSTVYLVP   70 (129)
T ss_dssp             TTSSEEEE---TTTTEEECC-CCSHHHHHHHHHHHHHHCSSCCEEEECCC-----------CCSSSSTTTTTCSEEEECC
T ss_pred             CCceEEec---CCCcEEEEC-CCCHHHHHHHhhccccccchhhhhhccccCCc-------cHHHHHHhhhhhCCeEEEEC
Confidence            99999995   344678885 999999999888763   56789999988775       2344555554 467776664

>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.68  E-value=1.7e-05  Score=63.11  Aligned_cols=46  Identities=13%  Similarity=0.166  Sum_probs=35.3

Q ss_pred             CCCCeeEEEEe---ecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEc
Q 017957          254 TPPHRMQIVHR---DIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLG  300 (363)
Q Consensus       254 ~~~gR~e~~~~---~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG  300 (363)
                      |+.+|||+++.   ..++++||||+ ||+|.+++++|++++    .+++++++.
T Consensus         1 Gv~RRfe~~ge~~~~~~~~~VidDy-AHhPtaI~a~l~a~r~~~~~~~~~~~~~   53 (152)
T d1p3da2           1 GAGRRFDQLGEFIRPNGKVRLVDDY-GHHPTEVGVTIKAAREGWGDKRIVMIFQ   53 (152)
T ss_dssp             CBTTSSEEEEEEEETTEEEEEEEEC-CCSHHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCCcceEEeceecccCCCcEEEEeC-CCCCHHHHHHHHHhhhhhhhhhhheeee
Confidence            47899999962   24789999995 999999999998874    345555554

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.00018  Score=51.86  Aligned_cols=27  Identities=4%  Similarity=-0.129  Sum_probs=25.5

Q ss_pred             eeeeccccCCCcHHHHHHHhcCCceee
Q 017957            4 LWLFLLEFQLKATGLACLLQSGKRVMS   30 (363)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~   30 (363)
                      ++|+|+|++++||++++|+++|+|+++
T Consensus        63 ~vV~SsAI~~~npel~~A~~~gIpv~~   89 (89)
T d1j6ua1          63 LVIKTPAVRDDNPEIVRARMERVPIEN   89 (89)
T ss_dssp             EEEECTTCCTTCHHHHHHHHTTCCEEE
T ss_pred             EEEEecCcCCCCHHHHHHHHcCCCccC
Confidence            689999999999999999999999975

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.0056  Score=50.53  Aligned_cols=32  Identities=28%  Similarity=0.185  Sum_probs=28.0

Q ss_pred             cEEEEeCCC---ChHHHHHHHHHHHHhcCCCeEee
Q 017957           44 KILAVTGTN---GKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        44 ~vI~VTGTn---GKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      |.+-||||.   ||||++.-|++.|.+.|+++...
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~i   36 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY   36 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence            567788887   99999999999999999998653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.038  Score=48.99  Aligned_cols=36  Identities=36%  Similarity=0.402  Sum_probs=30.9

Q ss_pred             CCCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeec
Q 017957           41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        41 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      .+..+|||||+  .||||...-|...+...|.+++...
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavla   89 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA   89 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeec
Confidence            46789999998  8999999999999999998886443

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.90  E-value=0.02  Score=49.81  Aligned_cols=32  Identities=34%  Similarity=0.532  Sum_probs=25.6

Q ss_pred             CCCcEEEEeCC--CChHHHHHHHHHHHHhcCCCe
Q 017957           41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA   72 (363)
Q Consensus        41 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~   72 (363)
                      ++.|+|||||+  .||||++..|.++|...|.++
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~   35 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKA   35 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCE
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCe
Confidence            46689999995  689999999999999877544

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.27  E-value=0.048  Score=42.78  Aligned_cols=35  Identities=17%  Similarity=0.124  Sum_probs=30.0

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeecc
Q 017957           43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN   77 (363)
Q Consensus        43 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~gn   77 (363)
                      +++|+|||.  .||||+..-|..-|+.+|.+++..-+
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~   37 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH   37 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEe
Confidence            369999995  68999999999999999999976554

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.77  E-value=0.13  Score=45.37  Aligned_cols=113  Identities=17%  Similarity=0.119  Sum_probs=62.6

Q ss_pred             CCCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeecc-cchhhhhhhh-------hcc--------c---CC------
Q 017957           41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN-LGNPLSEAAF-------HCI--------A---LP------   93 (363)
Q Consensus        41 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~gn-ig~p~~~~~~-------~~~--------~---~~------   93 (363)
                      .+..+|||||+  .||||+..-|...+...|.+++...+ ...|.+...+       ..+        .   +.      
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~  128 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  128 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence            46789999995  68999999888888889999875443 2222211100       000        0   00      


Q ss_pred             ----------CCCCCCcEEEEEeCc-ccccccCc-cccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEE
Q 017957           94 ----------SSKPKFQVAVVEVSS-YQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (363)
Q Consensus        94 ----------~~~~~~d~~VlE~g~-~~l~~~~~-~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~  161 (363)
                                ....++|+.++|... +|-+..-. ...-.+.|++-=.         -+++...|.++++-   .+.+|+
T Consensus       129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~~~~D~~v~v~~p~~---------GD~iQ~~k~gilE~---aDi~vv  196 (323)
T d2qm8a1         129 AAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGA---------GDELQGIKKGIFEL---ADMIAV  196 (323)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC---------------CCTTHHHH---CSEEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhhcccceEEEEeeccc---------hhhhhhhhhhHhhh---hheeeE
Confidence                      012457888999874 44332111 1222233333322         24566778888874   779999


Q ss_pred             eCCC
Q 017957          162 PFGN  165 (363)
Q Consensus       162 n~dd  165 (363)
                      |.-|
T Consensus       197 NKaD  200 (323)
T d2qm8a1         197 NKAD  200 (323)
T ss_dssp             ECCS
T ss_pred             eccc
Confidence            9865

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=92.55  E-value=0.07  Score=41.41  Aligned_cols=35  Identities=26%  Similarity=0.231  Sum_probs=29.8

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeecc
Q 017957           43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN   77 (363)
Q Consensus        43 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~gn   77 (363)
                      .|+|+|||.  .||||...-|..-|..+|.+++...+
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~   38 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH   38 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecc
Confidence            479999995  68999999999999999999865444

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.99  E-value=0.078  Score=45.66  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=28.0

Q ss_pred             CcEEEEe--CCCChHHHHHHHHHHHHhcCCCeEe
Q 017957           43 IKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        43 ~~vI~VT--GTnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      ++.|+|+  |-.|||||+.-|+..|.+.|+++.+
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLl   35 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMI   35 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence            4678887  7899999999999999999999864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.75  E-value=0.12  Score=41.02  Aligned_cols=33  Identities=30%  Similarity=0.490  Sum_probs=27.7

Q ss_pred             CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEe
Q 017957           42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      ..-+|||+|  -.||||++..|...|...+..+..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~   55 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV   55 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccccccee
Confidence            344799999  679999999999999998877643

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=90.68  E-value=0.12  Score=45.16  Aligned_cols=33  Identities=21%  Similarity=0.278  Sum_probs=26.3

Q ss_pred             CCcEEEEeC--CCChHHHHHHHHHHHHhc--CCCeEe
Q 017957           42 SIKILAVTG--TNGKSTVVTFVGQMLNHL--GIEAFV   74 (363)
Q Consensus        42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~--g~~~~~   74 (363)
                      .+-+|||+|  ..||||++..|..+|+..  +.++..
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~  115 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL  115 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEE
Confidence            445999999  579999999999999864  455543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=90.34  E-value=0.11  Score=41.04  Aligned_cols=31  Identities=45%  Similarity=0.553  Sum_probs=26.9

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHhcCCCeE
Q 017957           43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF   73 (363)
Q Consensus        43 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~   73 (363)
                      +|+|.|+|.  .||||++..|+..|...|..+.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~   33 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNK   33 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence            378889995  7899999999999999988764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=90.09  E-value=0.14  Score=40.09  Aligned_cols=30  Identities=27%  Similarity=0.341  Sum_probs=26.3

Q ss_pred             cEEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017957           44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAF   73 (363)
Q Consensus        44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~   73 (363)
                      ++|.|+|  -.||||++..|+.-|...|.++.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~   33 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK   33 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence            6899999  47899999999999999887764

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.32  E-value=0.23  Score=42.03  Aligned_cols=34  Identities=18%  Similarity=0.378  Sum_probs=28.1

Q ss_pred             CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017957           42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      ..++|.++|  -.|||||+..|+..|.+.|+++...
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllv   54 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLT   54 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            456777765  6799999999999999999988643

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.87  E-value=0.19  Score=41.16  Aligned_cols=33  Identities=24%  Similarity=0.473  Sum_probs=28.4

Q ss_pred             CcEEEEeC---CCChHHHHHHHHHHHHhcCCCeEee
Q 017957           43 IKILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        43 ~~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      .|+|+|++   -.||||++.-|+..|...|.++.+.
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~Vlli   36 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIV   36 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence            36888885   4899999999999999999998654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=88.74  E-value=0.18  Score=42.57  Aligned_cols=31  Identities=29%  Similarity=0.362  Sum_probs=26.9

Q ss_pred             cEEEEeC--CCChHHHHHHHHHHHHhcCCCeEe
Q 017957           44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      ++|+|+|  -.||||++.-|+..|.+.|+++.+
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVll   34 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMV   34 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEE
Confidence            5677775  679999999999999999999864

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.61  E-value=0.35  Score=39.46  Aligned_cols=32  Identities=22%  Similarity=0.367  Sum_probs=27.5

Q ss_pred             cEEEEeC---CCChHHHHHHHHHHHHhcCCCeEee
Q 017957           44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        44 ~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      ++|+|+|   -.||||++.-|+..|...|.++.+.
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~Vlli   37 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV   37 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence            6788885   5789999999999999999998654

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.42  E-value=0.2  Score=40.75  Aligned_cols=26  Identities=31%  Similarity=0.477  Sum_probs=21.8

Q ss_pred             cEEEEeC--CCChHHHHHHHHHHHHhcC
Q 017957           44 KILAVTG--TNGKSTVVTFVGQMLNHLG   69 (363)
Q Consensus        44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g   69 (363)
                      -+|||||  ..||||.+..|...|...+
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l~~~~   30 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLLGQNE   30 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhchhc
Confidence            4899999  5789999999998886553

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.68  E-value=0.5  Score=39.97  Aligned_cols=35  Identities=20%  Similarity=0.186  Sum_probs=29.9

Q ss_pred             CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017957           42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG   76 (363)
Q Consensus        42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g   76 (363)
                      ..++|-++|  -.||||++..++..|.+.|+++.+..
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD   43 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS   43 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEe
Confidence            456888887  78999999999999999999986554

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=84.71  E-value=0.39  Score=36.98  Aligned_cols=30  Identities=23%  Similarity=0.277  Sum_probs=25.5

Q ss_pred             CCcEEEEeC--CCChHHHHHHHHHHHHhcCCC
Q 017957           42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIE   71 (363)
Q Consensus        42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~   71 (363)
                      +.-+|-+||  ..||||++..|+.-|...+..
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~   36 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGR   36 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence            556899999  679999999999999887654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.87  E-value=0.6  Score=37.87  Aligned_cols=34  Identities=24%  Similarity=0.172  Sum_probs=28.8

Q ss_pred             CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017957           42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG   75 (363)
Q Consensus        42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~   75 (363)
                      +...|+|.|  -.||||.+.+|..-|.+.|.++...
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~   37 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL   37 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            457888888  5899999999999999999988543

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=83.87  E-value=0.34  Score=39.29  Aligned_cols=27  Identities=44%  Similarity=0.732  Sum_probs=21.1

Q ss_pred             Cc-EEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017957           43 IK-ILAVTG--TNGKSTVVTFVGQMLNHLGIEAF   73 (363)
Q Consensus        43 ~~-vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~   73 (363)
                      ++ +|||||  -.||||++.+    |++.|+.+.
T Consensus         2 mk~iIgitG~igSGKStv~~~----l~~~G~~vi   31 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANA----FADLGINVI   31 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHH----HHHTTCEEE
T ss_pred             CCEEEEEECCCcCCHHHHHHH----HHHCCCcEE
Confidence            35 899999  5799998875    577788764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=82.65  E-value=0.43  Score=38.52  Aligned_cols=27  Identities=30%  Similarity=0.584  Sum_probs=20.5

Q ss_pred             cEEEEeC--CCChHHHHHHHHHHHHhcCCCeEe
Q 017957           44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      .+|||||  ..||||++.    +|++.|..+..
T Consensus         3 ~iIgITG~igSGKStv~~----~l~~~G~~vid   31 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIAN----LFTDLGVPLVD   31 (205)
T ss_dssp             EEEEEECSTTSCHHHHHH----HHHTTTCCEEE
T ss_pred             EEEEEECCCCCCHHHHHH----HHHHCCCeEEE
Confidence            4899999  679999766    55677877643

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=81.61  E-value=0.41  Score=39.47  Aligned_cols=27  Identities=22%  Similarity=0.468  Sum_probs=20.1

Q ss_pred             CcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017957           43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA   72 (363)
Q Consensus        43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~   72 (363)
                      +++|||||  -.||||++.+|..   ..|+.+
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e---~~g~~~   29 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMS---NYSAVK   29 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH---HSCEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH---hCCCeE
Confidence            36899999  6899999988744   346443

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=81.37  E-value=0.44  Score=37.76  Aligned_cols=29  Identities=31%  Similarity=0.470  Sum_probs=21.5

Q ss_pred             CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEe
Q 017957           42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV   74 (363)
Q Consensus        42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~   74 (363)
                      .+-+|||||  ..||||.+.+|    ++.|+.+..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l----~~~g~~~~~   32 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALL----RSWGYPVLD   32 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHH----HHTTCCEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHH----HHCCCeEEE
Confidence            345899999  57999988764    567877643

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=80.72  E-value=1  Score=36.55  Aligned_cols=36  Identities=14%  Similarity=0.199  Sum_probs=28.4

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeecc
Q 017957           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN   77 (363)
Q Consensus        42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~gn   77 (363)
                      +..+|...|-  .|||||+.=|++.+...|.++.+...
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~   46 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA   46 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence            4457666663  58999999999999999999876544

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=80.59  E-value=1  Score=36.66  Aligned_cols=37  Identities=19%  Similarity=0.289  Sum_probs=27.9

Q ss_pred             CCCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeecc
Q 017957           41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN   77 (363)
Q Consensus        41 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~gn   77 (363)
                      +++.+|...|-  .|||||..=|++-+...|.++++.+.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~   47 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA   47 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEee
Confidence            34557766663  58999999999999888988865543