Query 017958
Match_columns 363
No_of_seqs 182 out of 671
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 07:39:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 3.4E-18 1.2E-22 131.6 4.4 48 4-55 7-54 (63)
2 4gat_A Nitrogen regulatory pro 99.7 5.8E-18 2E-22 131.2 3.8 50 2-55 7-56 (66)
3 2vut_I AREA, nitrogen regulato 99.7 2.8E-17 9.6E-22 118.0 3.3 42 5-50 2-43 (43)
4 1gnf_A Transcription factor GA 99.6 1.2E-16 4E-21 116.3 4.6 43 3-49 3-45 (46)
5 2kae_A GATA-type transcription 99.6 6.9E-17 2.4E-21 126.8 -0.4 51 2-55 6-56 (71)
6 4hc9_A Trans-acting T-cell-spe 99.5 3.6E-15 1.2E-19 125.6 3.9 48 4-55 59-106 (115)
7 4hc9_A Trans-acting T-cell-spe 99.3 1.4E-12 4.8E-17 109.9 3.5 42 4-49 5-46 (115)
8 1dl6_A Transcription factor II 51.3 8 0.00027 28.5 2.2 33 4-39 11-43 (58)
9 2crr_A Stromal membrane-associ 47.7 15 0.0005 31.7 3.6 47 4-52 29-76 (141)
10 3cng_A Nudix hydrolase; struct 46.7 6 0.00021 33.4 1.0 35 2-36 1-35 (189)
11 3k7a_M Transcription initiatio 45.4 12 0.00039 35.7 2.9 33 4-37 21-53 (345)
12 1k81_A EIF-2-beta, probable tr 44.8 3.2 0.00011 28.2 -0.8 29 6-35 2-30 (36)
13 2olm_A Nucleoporin-like protei 41.4 12 0.00039 32.3 2.0 45 4-50 25-69 (140)
14 1qyp_A RNA polymerase II; tran 40.9 4.8 0.00016 29.1 -0.4 34 5-38 16-55 (57)
15 1pft_A TFIIB, PFTFIIBN; N-term 40.4 7.3 0.00025 27.2 0.5 33 4-39 5-37 (50)
16 3pt3_A E3 ubiquitin-protein li 38.6 11 0.00038 31.4 1.4 32 307-338 29-60 (118)
17 2owa_A Arfgap-like finger doma 34.6 17 0.00058 31.3 2.0 46 4-51 36-82 (138)
18 2iqj_A Stromal membrane-associ 32.8 18 0.00062 30.8 1.8 37 4-42 27-63 (134)
19 2crw_A ARF GAP 3, ADP-ribosyla 31.4 24 0.00083 30.7 2.4 46 4-51 29-75 (149)
20 3h0g_L DNA-directed RNA polyme 30.6 18 0.00062 27.6 1.3 32 5-41 22-53 (63)
21 2b0o_E UPLC1; arfgap, structur 29.6 17 0.00057 32.9 1.1 36 4-41 42-77 (301)
22 2e9h_A EIF-5, eukaryotic trans 28.9 13 0.00044 32.9 0.2 30 5-34 104-134 (157)
23 2g2k_A EIF-5, eukaryotic trans 28.4 11 0.00036 33.8 -0.4 28 6-34 98-127 (170)
24 2g9w_A Conserved hypothetical 27.8 28 0.00095 28.1 2.1 22 312-333 101-122 (138)
25 3odc_A Poly [ADP-ribose] polym 27.0 30 0.001 28.6 2.1 33 303-339 73-105 (111)
26 1k8k_G P16, ARP2/3 complex 16 25.9 25 0.00087 30.9 1.6 28 300-330 83-110 (151)
27 1tfi_A Transcriptional elongat 25.4 16 0.00054 26.3 0.1 34 4-37 9-48 (50)
28 2p57_A GTPase-activating prote 24.7 25 0.00084 30.7 1.3 46 4-51 37-83 (144)
29 4bbr_M Transcription initiatio 24.2 20 0.00067 34.4 0.6 33 4-37 21-53 (345)
30 3dwd_A ADP-ribosylation factor 24.2 33 0.0011 30.0 2.0 47 3-51 37-84 (147)
31 1okr_A MECI, methicillin resis 23.9 27 0.00093 26.9 1.2 21 311-331 99-121 (123)
32 3k1f_M Transcription initiatio 22.8 27 0.00093 32.0 1.2 30 4-34 21-50 (197)
33 1twf_L ABC10-alpha, DNA-direct 22.7 22 0.00075 27.4 0.5 26 6-36 30-55 (70)
34 3rii_A Ubiquitin carboxyl-term 20.4 47 0.0016 30.6 2.3 39 288-328 97-136 (233)
35 1f7l_A Holo-(acyl carrier prot 20.3 41 0.0014 26.5 1.6 14 316-329 28-41 (121)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.71 E-value=3.4e-18 Score=131.57 Aligned_cols=48 Identities=31% Similarity=0.655 Sum_probs=45.7
Q ss_pred CCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCcCCCCCC
Q 017958 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD 55 (363)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~~rkd~i 55 (363)
...|.||+++.||+||+||+|+ +|||||||||++++++ ||+.+++++|
T Consensus 7 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~~---RP~~~~~~~i 54 (63)
T 3dfx_A 7 GTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNIN---RPLTMKKEGI 54 (63)
T ss_dssp TCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSSC---CCGGGCCSSC
T ss_pred CCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCCC---CCcCcCCCcc
Confidence 4789999999999999999997 8999999999999997 9999999998
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.70 E-value=5.8e-18 Score=131.20 Aligned_cols=50 Identities=34% Similarity=0.740 Sum_probs=47.4
Q ss_pred CCCCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCcCCCCCC
Q 017958 2 GKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD 55 (363)
Q Consensus 2 Gk~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~~rkd~i 55 (363)
|..+.|+||++++||+||+||.|. +|||||||||++|+++ ||+.++++.|
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~---RP~~~k~~~i 56 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV---RPLSLKTDVI 56 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCSC---CCGGGCCSCC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCCC---Cchhhccccc
Confidence 567899999999999999999997 8999999999999998 9999999988
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.66 E-value=2.8e-17 Score=117.97 Aligned_cols=42 Identities=40% Similarity=0.884 Sum_probs=39.4
Q ss_pred CccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCcC
Q 017958 5 GPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHA 50 (363)
Q Consensus 5 r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~~ 50 (363)
+.|++|+++.||+||+||+|. +|||||||||++||++ ||+++
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~---RP~~l 43 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV---RPLSL 43 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC---CCCCC
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC---CCCCC
Confidence 689999999999999999997 8999999999999998 88865
No 4
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.64 E-value=1.2e-16 Score=116.27 Aligned_cols=43 Identities=42% Similarity=0.891 Sum_probs=39.7
Q ss_pred CCCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCc
Q 017958 3 KQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLH 49 (363)
Q Consensus 3 k~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~ 49 (363)
..+.|.||++++||+||+||.|. +|||||||||++++++ ||+.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~---RP~~ 45 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQN---RPLI 45 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSC---CCCC
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCC---CCCC
Confidence 46789999999999999999996 8999999999999998 8874
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.59 E-value=6.9e-17 Score=126.84 Aligned_cols=51 Identities=31% Similarity=0.465 Sum_probs=41.9
Q ss_pred CCCCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCcCCCCCC
Q 017958 2 GKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD 55 (363)
Q Consensus 2 Gk~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~~rkd~i 55 (363)
+....|+||+|+.||+||+|+.+..+|||||||||+++++. ||+.++.+.+
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~~---RP~~~~~~~~ 56 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKT---RPVTAVNKYQ 56 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHSC---CCTHHHHHHH
T ss_pred CCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCCC---CCcccchhhh
Confidence 45689999999999999995444448999999999999998 9988887544
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.52 E-value=3.6e-15 Score=125.63 Aligned_cols=48 Identities=31% Similarity=0.647 Sum_probs=45.7
Q ss_pred CCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCcCCCCCC
Q 017958 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD 55 (363)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~~rkd~i 55 (363)
...|+||+++.||+||+||+| .+|||||||||++|++. ||+.++++.|
T Consensus 59 ~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~---rp~~~~~~~i 106 (115)
T 4hc9_A 59 GTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNIN---RPLTMKKEGI 106 (115)
T ss_dssp TCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC---CCGGGCCSSC
T ss_pred cccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCC---CCccccccch
Confidence 468999999999999999999 67999999999999998 9999999998
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.27 E-value=1.4e-12 Score=109.89 Aligned_cols=42 Identities=45% Similarity=0.886 Sum_probs=37.8
Q ss_pred CCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCc
Q 017958 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLH 49 (363)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~ 49 (363)
.+.|.||+++.||+||+|+.| .+|||||||||++++++ ||+.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~n---RP~~ 46 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQN---RPLI 46 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC---CCCS
T ss_pred CCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhcccc---cccc
Confidence 578999999999999999999 57999999999999998 7753
No 8
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=51.28 E-value=8 Score=28.48 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCccccCCCCCCCcccCCCCCCCcccchhhhhHHhc
Q 017958 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTK 39 (363)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~ 39 (363)
...|.+|+.+. +-.....| .++|..||+-+.-+
T Consensus 11 ~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 11 RVTCPNHPDAI--LVEDYRAG-DMICPECGLVVGDR 43 (58)
T ss_dssp CCSBTTBSSSC--CEECSSSC-CEECTTTCCEECCS
T ss_pred cccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEecc
Confidence 35799998755 44444456 46999999976544
No 9
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.73 E-value=15 Score=31.68 Aligned_cols=47 Identities=17% Similarity=0.398 Sum_probs=33.6
Q ss_pred CCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCC-CCCCCCcCCC
Q 017958 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL-ANYTPLHARA 52 (363)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~-~~~RPl~~rk 52 (363)
...|+.|+.. -|.|-.-..| ..+|-.|.-..|.-|++ -..|.+.|..
T Consensus 29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VkSl~ld~ 76 (141)
T 2crr_A 29 NKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNLDQ 76 (141)
T ss_dssp GSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHHCTTTCCCBCSSSSC
T ss_pred CCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcCCCCCCeeeECCCCC
Confidence 3689999987 4889988888 56999997766665643 2345555543
No 10
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=46.68 E-value=6 Score=33.37 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=27.2
Q ss_pred CCCCccccCCCCCCCcccCCCCCCCcccchhhhhH
Q 017958 2 GKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRW 36 (363)
Q Consensus 2 Gk~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~ 36 (363)
|..+-|..||+..+.....|..+....|-.||.+.
T Consensus 1 ~~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~ 35 (189)
T 3cng_A 1 GHMKFCSQCGGEVILRIPEGDTLPRYICPKCHTIH 35 (189)
T ss_dssp --CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEE
T ss_pred CCcccCchhCCccccccccCCCCcceECCCCCCcc
Confidence 66789999999998877677777777999999533
No 11
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=45.41 E-value=12 Score=35.70 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCccccCCCCCCCcccCCCCCCCcccchhhhhHH
Q 017958 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWR 37 (363)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k 37 (363)
...|.+|+.+.+-+-..-..| .++|..||+-..
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVLS 53 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCC-CEecCCCCeEcc
Confidence 467999998753232334456 459999999443
No 12
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=44.79 E-value=3.2 Score=28.21 Aligned_cols=29 Identities=31% Similarity=0.704 Sum_probs=21.8
Q ss_pred ccccCCCCCCCcccCCCCCCCcccchhhhh
Q 017958 6 PCYHCGVTSTPLWRNGPPEKPVLCNACGSR 35 (363)
Q Consensus 6 ~CsnCgTt~TPlWRrGp~G~~~LCNACGL~ 35 (363)
.|..|+...|-+=+++..- -.-|+|||-.
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCCc
Confidence 5999999999998754322 3359999974
No 13
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=41.44 E-value=12 Score=32.27 Aligned_cols=45 Identities=16% Similarity=0.434 Sum_probs=31.6
Q ss_pred CCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCcC
Q 017958 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHA 50 (363)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~~ 50 (363)
...|+.|+.. -|.|-.-..| ..+|-.|.-..|.-|+.-..|.+.|
T Consensus 25 N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~LG~~s~VrSl~l 69 (140)
T 2olm_A 25 NRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRGLNPPHRVKSISM 69 (140)
T ss_dssp GGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTTSSSCCCEEETTT
T ss_pred CCcCCCCCCC-CCCceeeccC-EEEchhccchhccCCCcceeeecCC
Confidence 4689999986 6889988888 5699999765554444333344444
No 14
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=40.86 E-value=4.8 Score=29.05 Aligned_cols=34 Identities=29% Similarity=0.652 Sum_probs=23.7
Q ss_pred CccccCCCCC----CCcccCCCCCC--CcccchhhhhHHh
Q 017958 5 GPCYHCGVTS----TPLWRNGPPEK--PVLCNACGSRWRT 38 (363)
Q Consensus 5 r~CsnCgTt~----TPlWRrGp~G~--~~LCNACGL~~k~ 38 (363)
..|..||-.. +-+||...++. -+.|..||-.|+-
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 4699999854 33567766552 2589999988764
No 15
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=40.36 E-value=7.3 Score=27.23 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=22.1
Q ss_pred CCccccCCCCCCCcccCCCCCCCcccchhhhhHHhc
Q 017958 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTK 39 (363)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~ 39 (363)
...|.+|+.+ ++-.....| .++|..||+-|.-+
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~~e~ 37 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG-EIVCAKCGYVIEEN 37 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT-EEEESSSCCBCCCC
T ss_pred cEeCcCCCCc--ceEEcCCCC-eEECcccCCccccc
Confidence 4679999873 443333334 57999999976544
No 16
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=38.59 E-value=11 Score=31.42 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=24.4
Q ss_pred ccccHHHHHhhhCHHHHHHHHhcCCCCCCCCC
Q 017958 307 DILNFKEFVGHLTHEEQQQLLKYLPLNDTTVF 338 (363)
Q Consensus 307 d~~nf~~f~~~~t~~eq~~l~~~l~~~d~~~~ 338 (363)
-|-.|=|.++.||+|||.+||+|.-.-|.+.+
T Consensus 29 ~i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~ 60 (118)
T 3pt3_A 29 FKRWFWSIVEKMSMTERQDLVYFWTSSPSLPA 60 (118)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHSCC----
T ss_pred HHHHHHHHHHHCCHHHHHHHHhHhcCCCCCCC
Confidence 36789999999999999999999776655544
No 17
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=34.60 E-value=17 Score=31.27 Aligned_cols=46 Identities=20% Similarity=0.443 Sum_probs=33.1
Q ss_pred CCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCC-CCCCCcCC
Q 017958 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLA-NYTPLHAR 51 (363)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~-~~RPl~~r 51 (363)
...|+.|+... |.|-.-..| ..+|-.|.-..|.-|++. ..|.+.+.
T Consensus 36 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~lD 82 (138)
T 2owa_A 36 NRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKMGVHISFVRSSDLD 82 (138)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTTCTTTCCEEETTTS
T ss_pred CCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCCCCCCCeeeecCcC
Confidence 36899999875 899998888 569999977666656531 33444444
No 18
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=32.77 E-value=18 Score=30.85 Aligned_cols=37 Identities=22% Similarity=0.481 Sum_probs=29.5
Q ss_pred CCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCC
Q 017958 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL 42 (363)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~ 42 (363)
...|+.|+... |.|-.-..| ..+|-.|.-..|.-|++
T Consensus 27 N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~lG~h 63 (134)
T 2iqj_A 27 NKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNLGVH 63 (134)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcCCCC
Confidence 36899999875 889998888 56999997766665653
No 19
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.38 E-value=24 Score=30.74 Aligned_cols=46 Identities=22% Similarity=0.500 Sum_probs=33.5
Q ss_pred CCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCC-CCCCCcCC
Q 017958 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLA-NYTPLHAR 51 (363)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~-~~RPl~~r 51 (363)
...|+.|+.. -|.|-.-..| ..+|-.|.-..|.-|+.. ..|.+.|.
T Consensus 29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~LD 75 (149)
T 2crw_A 29 NKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSLGVHLSFIRSTELD 75 (149)
T ss_dssp TSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHHCTTTCCEECSSSC
T ss_pred CCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccCCCCCCeeeccccC
Confidence 4789999975 5889988888 569999977666656532 33555554
No 20
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=30.58 E-value=18 Score=27.60 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=23.2
Q ss_pred CccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCC
Q 017958 5 GPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 (363)
Q Consensus 5 r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~ 41 (363)
-.|..|++..... .+.+.-|..||-+.-.+.+
T Consensus 22 Y~C~~Cg~~~~l~-----~~~~iRC~~CG~RILyK~R 53 (63)
T 3h0g_L 22 YLCADCGARNTIQ-----AKEVIRCRECGHRVMYKMR 53 (63)
T ss_dssp CBCSSSCCBCCCC-----SSSCCCCSSSCCCCCBCCC
T ss_pred EECCCCCCeeecC-----CCCceECCCCCcEEEEEec
Confidence 5799999988754 2445679999986665544
No 21
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=29.61 E-value=17 Score=32.92 Aligned_cols=36 Identities=25% Similarity=0.662 Sum_probs=28.1
Q ss_pred CCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCC
Q 017958 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 (363)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~ 41 (363)
...|+.|+... |.|-.-.-| ..+|-.|.-.-|.-|+
T Consensus 42 n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~lg~ 77 (301)
T 2b0o_E 42 NSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHRELGV 77 (301)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHhhCC
Confidence 47899999965 899999999 5699999654454444
No 22
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.87 E-value=13 Score=32.87 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=21.9
Q ss_pred CccccCCCCCCCcccC-CCCCCCcccchhhh
Q 017958 5 GPCYHCGVTSTPLWRN-GPPEKPVLCNACGS 34 (363)
Q Consensus 5 r~CsnCgTt~TPlWRr-Gp~G~~~LCNACGL 34 (363)
-.|..|+...|-+-+. ...---.-|+|||-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa 134 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGY 134 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCC
Confidence 4699999999999862 11122347999997
No 23
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=28.43 E-value=11 Score=33.82 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=21.7
Q ss_pred ccccCCCCCCCcccC--CCCCCCcccchhhh
Q 017958 6 PCYHCGVTSTPLWRN--GPPEKPVLCNACGS 34 (363)
Q Consensus 6 ~CsnCgTt~TPlWRr--Gp~G~~~LCNACGL 34 (363)
.|..|+...|-+-+. +.. --.-|+|||-
T Consensus 98 lC~~C~sPdT~L~k~~~~r~-~~l~C~ACGa 127 (170)
T 2g2k_A 98 LCPECENPETDLHVNPKKQT-IGNSCKACGY 127 (170)
T ss_dssp SCTTTSSSCEEEEEETTTTE-EEEEETTTCC
T ss_pred ECCCCCCCccEEEEecCCCE-EEEEccccCC
Confidence 699999999999883 322 2347999997
No 24
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=27.84 E-value=28 Score=28.10 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=18.9
Q ss_pred HHHHhhhCHHHHHHHHhcCCCC
Q 017958 312 KEFVGHLTHEEQQQLLKYLPLN 333 (363)
Q Consensus 312 ~~f~~~~t~~eq~~l~~~l~~~ 333 (363)
..|+..||+||+.+|.++|-.+
T Consensus 101 ~~~~~~ls~eE~~~L~~lL~~~ 122 (138)
T 2g9w_A 101 VHFVERVGADEADALRRALAEL 122 (138)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh
Confidence 6778899999999999988654
No 25
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=27.00 E-value=30 Score=28.65 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=22.7
Q ss_pred ccccccccHHHHHhhhCHHHHHHHHhcCCCCCCCCCC
Q 017958 303 IDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFP 339 (363)
Q Consensus 303 ~dl~d~~nf~~f~~~~t~~eq~~l~~~l~~~d~~~~~ 339 (363)
.++.||-.|| .|..|.|++|.+.|+.+.+.-|-
T Consensus 73 ~~~~~I~Gf~----~L~~eDQe~Ikk~i~~~~~~~~~ 105 (111)
T 3odc_A 73 YSASQLKGFS----LLATEDKEALKKQLPGVKSEGLE 105 (111)
T ss_dssp TGGGGEETGG----GSCHHHHHHHHHHSCC-------
T ss_pred CCHHhCCChH----HCCHHHHHHHHHHHHhhccccch
Confidence 4677888886 58999999999999999876553
No 26
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=25.87 E-value=25 Score=30.89 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=22.4
Q ss_pred ceeccccccccHHHHHhhhCHHHHHHHHhcC
Q 017958 300 LCEIDLNDILNFKEFVGHLTHEEQQQLLKYL 330 (363)
Q Consensus 300 l~~~dl~d~~nf~~f~~~~t~~eq~~l~~~l 330 (363)
|++|--.|| +.++..|+.|+|--|||||
T Consensus 83 L~siK~sdI---~~~v~~L~~e~~D~LMKYi 110 (151)
T 1k8k_G 83 LISFKANDI---EKAVQSLDKNGVDLLMKYI 110 (151)
T ss_dssp HHHSCGGGH---HHHHHTSCHHHHHHHHHHH
T ss_pred HHHccHHHH---HHHHHHhChhhhhHHHHHH
Confidence 344444565 8999999999999999995
No 27
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=25.41 E-value=16 Score=26.33 Aligned_cols=34 Identities=29% Similarity=0.700 Sum_probs=24.0
Q ss_pred CCccccCCCCCCCcc----cCCCCCCC--cccchhhhhHH
Q 017958 4 QGPCYHCGVTSTPLW----RNGPPEKP--VLCNACGSRWR 37 (363)
Q Consensus 4 ~r~CsnCgTt~TPlW----RrGp~G~~--~LCNACGL~~k 37 (363)
...|..|+-...-.| |+++++.. +.|..||-+|+
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 357999998876555 55555422 48999998886
No 28
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=24.68 E-value=25 Score=30.66 Aligned_cols=46 Identities=22% Similarity=0.522 Sum_probs=33.0
Q ss_pred CCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCC-CCCCCCcCC
Q 017958 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL-ANYTPLHAR 51 (363)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~-~~~RPl~~r 51 (363)
.+.|++|+... |.|-.-..| ..+|-.|.-..|.-|+. ...|.+.+.
T Consensus 37 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hIS~VrSl~LD 83 (144)
T 2p57_A 37 NKACFDCGAKN-PSWASITYG-VFLCIDCSGVHRSLGVHLSFIRSTELD 83 (144)
T ss_dssp GGBCTTTCCBS-CCEEEGGGT-EEECHHHHHHHHHHCTTTCCEEESSSC
T ss_pred CCcCCCCcCCC-CCeEEeccC-EEEhhhchHHHcCCCCCCCeeeecccC
Confidence 47899999864 889988888 56999997766665653 233444444
No 29
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=24.19 E-value=20 Score=34.38 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=21.4
Q ss_pred CCccccCCCCCCCcccCCCCCCCcccchhhhhHH
Q 017958 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWR 37 (363)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k 37 (363)
...|.+|+...+-+--.-..| .++|..||+-..
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G-~~vC~~CGlVl~ 53 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVLS 53 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGT-EEEETTTCBEEE
T ss_pred CCcCCCCCCCCCceeEECCCC-cEEeCCCCCCcc
Confidence 357999998444343333456 469999998543
No 30
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=24.18 E-value=33 Score=30.02 Aligned_cols=47 Identities=21% Similarity=0.515 Sum_probs=33.2
Q ss_pred CCCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCC-CCCCCCcCC
Q 017958 3 KQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL-ANYTPLHAR 51 (363)
Q Consensus 3 k~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~-~~~RPl~~r 51 (363)
....|+.|+... |.|-.-..| ..+|-.|.-..|.-|+. ...|.+.|.
T Consensus 37 ~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~LG~hISkVkSl~LD 84 (147)
T 3dwd_A 37 ENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGLGVHLSFVRSVTMD 84 (147)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEESCC-
T ss_pred CCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcCCCCCCcccccccc
Confidence 357899999875 889988888 66999998766665653 123444443
No 31
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=23.85 E-value=27 Score=26.88 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=17.3
Q ss_pred HHHHH--hhhCHHHHHHHHhcCC
Q 017958 311 FKEFV--GHLTHEEQQQLLKYLP 331 (363)
Q Consensus 311 f~~f~--~~~t~~eq~~l~~~l~ 331 (363)
...|+ ..||+||+++|.++|-
T Consensus 99 ~~~~~~~~~ls~ee~~~l~~~L~ 121 (123)
T 1okr_A 99 VLNFVEKEDLSQDEIEELRNILN 121 (123)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHh
Confidence 34677 8899999999998873
No 32
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=22.77 E-value=27 Score=32.04 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=20.1
Q ss_pred CCccccCCCCCCCcccCCCCCCCcccchhhh
Q 017958 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGS 34 (363)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL 34 (363)
...|..|+...+-+-..-..| .++|..||+
T Consensus 21 ~~~CPECGs~~t~IV~D~erG-E~VCsdCGL 50 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGL 50 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGT-EEEETTTCB
T ss_pred CeECcCCCCcCCeEEEeCCCC-EEEEcCCCC
Confidence 458999998544332222335 459999999
No 33
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=22.74 E-value=22 Score=27.42 Aligned_cols=26 Identities=27% Similarity=0.602 Sum_probs=17.1
Q ss_pred ccccCCCCCCCcccCCCCCCCcccchhhhhH
Q 017958 6 PCYHCGVTSTPLWRNGPPEKPVLCNACGSRW 36 (363)
Q Consensus 6 ~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~ 36 (363)
.|.+||...... .+...-|-.||-+.
T Consensus 30 ~C~~CG~~~e~~-----~~d~irCp~CG~RI 55 (70)
T 1twf_L 30 ICAECSSKLSLS-----RTDAVRCKDCGHRI 55 (70)
T ss_dssp ECSSSCCEECCC-----TTSTTCCSSSCCCC
T ss_pred ECCCCCCcceeC-----CCCCccCCCCCceE
Confidence 688888876654 22344688888733
No 34
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=20.37 E-value=47 Score=30.61 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=30.3
Q ss_pred hhhhhcccCCCCceeccccccc-cHHHHHhhhCHHHHHHHHh
Q 017958 288 EKLQILGSHTSPLCEIDLNDIL-NFKEFVGHLTHEEQQQLLK 328 (363)
Q Consensus 288 ~~~~~l~~~~spl~~~dl~d~~-nf~~f~~~~t~~eq~~l~~ 328 (363)
.=+|+|.|...+ .|++...| +|-+|+..|+.+|..++|.
T Consensus 97 ALLh~l~N~~~~--~i~~gs~L~~f~~~t~~~~p~~Rg~~L~ 136 (233)
T 3rii_A 97 AIVSVLLNCTHQ--DVHLGETLSEFKEFSQSFDAAMKGLALS 136 (233)
T ss_dssp HHHHHHHTCCCT--TCBCCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCcc--cccCCcHHHHHHHHhcCCCHHHHHHHHh
Confidence 446799988643 36666444 8999999999999999885
No 35
>1f7l_A Holo-(acyl carrier protein) synthase; 9-strand pseudo beta barrel protein, COA complex protein, CO complex, transferase; HET: COA; 1.50A {Bacillus subtilis} SCOP: d.150.1.2 PDB: 1f7t_A 1f80_A*
Probab=20.27 E-value=41 Score=26.48 Aligned_cols=14 Identities=29% Similarity=0.261 Sum_probs=9.8
Q ss_pred hhhCHHHHHHHHhc
Q 017958 316 GHLTHEEQQQLLKY 329 (363)
Q Consensus 316 ~~~t~~eq~~l~~~ 329 (363)
+.||++||..+.++
T Consensus 28 r~~t~~E~~~~~~~ 41 (121)
T 1f7l_A 28 RILTRSELDQYYEL 41 (121)
T ss_dssp HHCCHHHHHHHTTS
T ss_pred HcCCHHHHHHHHcc
Confidence 56888888766543
Done!