BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017959
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 144 bits (363), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 160/329 (48%), Gaps = 29/329 (8%)
Query: 22 VKGMVDLGLSKVPQPYIQPQEER-------IDKKNASICAQAPIDLSKLDGPN---HEEV 71
V+ + G+ +P+ YI+P+EE +++K IDL ++ + E
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 72 ARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFFNQTPGKKAVYRKGVSPSPLVKYG 131
++ +AS G ++NHG+P +L+E +K A FF+ + +K Y + + YG
Sbjct: 67 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 132 TSFVPEKEKALEWKDY-ISMVYTNDAEALQQWPKECNIVALEYLRTSMKMVRKLLEVLFK 190
+ LEW+DY + Y + L WPK + +E K +R L +FK
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY-IEATSEYAKCLRLLATKVFK 185
Query: 191 NLGVTLD-EPE-LDAIIG-----FKMVNMNFYPTCPNPELTVGVGRHSDMGALTILLQDG 243
L V L EP+ L+ +G + +N+YP CP PEL +GV H+D+ ALT +L +
Sbjct: 186 ALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM 245
Query: 244 IGGLYVKVEEDIPDVGKKGEWMEIPPVPGALVINVGDTLQILSNGRYKSAEHXXXXXXXX 303
+ GL + E G+W+ VP ++V+++GDTL+ILSNG+YKS H
Sbjct: 246 VPGLQLFYE---------GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEK 296
Query: 304 XXXXIPIFTM-PKPTVKIGPLPQLVEKEG 331
+F PK + + PLP++V E
Sbjct: 297 VRISWAVFCEPPKDKIVLKPLPEMVSVES 325
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 160/329 (48%), Gaps = 29/329 (8%)
Query: 22 VKGMVDLGLSKVPQPYIQPQEER-------IDKKNASICAQAPIDLSKLDGPN---HEEV 71
V+ + G+ +P+ YI+P+EE +++K IDL ++ + E
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 65
Query: 72 ARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFFNQTPGKKAVYRKGVSPSPLVKYG 131
++ +AS G ++NHG+P +L+E +K A FF+ + +K Y + + YG
Sbjct: 66 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 125
Query: 132 TSFVPEKEKALEWKDY-ISMVYTNDAEALQQWPKECNIVALEYLRTSMKMVRKLLEVLFK 190
+ LEW+DY + Y + L WPK + +E K +R L +FK
Sbjct: 126 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY-IEATSEYAKCLRLLATKVFK 184
Query: 191 NLGVTLD-EPE-LDAIIG-----FKMVNMNFYPTCPNPELTVGVGRHSDMGALTILLQDG 243
L V L EP+ L+ +G + +N+YP CP PEL +GV H+D+ ALT +L +
Sbjct: 185 ALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM 244
Query: 244 IGGLYVKVEEDIPDVGKKGEWMEIPPVPGALVINVGDTLQILSNGRYKSAEHXXXXXXXX 303
+ GL + E G+W+ VP ++V+++GDTL+ILSNG+YKS H
Sbjct: 245 VPGLQLFYE---------GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEK 295
Query: 304 XXXXIPIFTM-PKPTVKIGPLPQLVEKEG 331
+F PK + + PLP++V E
Sbjct: 296 VRISWAVFCEPPKDKIVLKPLPEMVSVES 324
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 156/329 (47%), Gaps = 29/329 (8%)
Query: 22 VKGMVDLGLSKVPQPYIQPQEER-------IDKKNASICAQAPIDLSKLDGPN---HEEV 71
V+ + G+ +P+ YI+P+EE +++K IDL ++ + E
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 72 ARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFFNQTPGKKAVYRKGVSPSPLVKYG 131
++ +AS G ++NHG+P +L E +K A FF+ + +K Y + + YG
Sbjct: 67 IEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 132 TSFVPEKEKALEWKDY-ISMVYTNDAEALQQWPKECNIVALEYLRTSMKMVRKLLEVLFK 190
+ LEW+DY + Y + L WPK + +E K +R L +FK
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY-IEATSEYAKCLRLLATKVFK 185
Query: 191 NLGVTLD-EPE-LDAIIG-----FKMVNMNFYPTCPNPELTVGVGRHSDMGALTILLQDG 243
L V L EP+ L+ +G +N+YP CP PEL +GV H+D+ ALT +L +
Sbjct: 186 ALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNX 245
Query: 244 IGGLYVKVEEDIPDVGKKGEWMEIPPVPGALVINVGDTLQILSNGRYKSAEHXXXXXXXX 303
+ GL + E G+W+ VP ++V ++GDTL+ILSNG+YKS H
Sbjct: 246 VPGLQLFYE---------GKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEK 296
Query: 304 XXXXIPIFTM-PKPTVKIGPLPQLVEKEG 331
+F PK + + PLP+ V E
Sbjct: 297 VRISWAVFCEPPKDKIVLKPLPEXVSVES 325
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 146/297 (49%), Gaps = 30/297 (10%)
Query: 58 IDLSKLDGPNHEEVARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFFNQTPGKKAV 117
I L K++G I A E GFF++VNHG+P E+ ++++ + + ++
Sbjct: 7 ISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQR-- 64
Query: 118 YRKGVSPSPLVKYGTSFVPEKEKALEWKD--YISMVYTNDAEALQQWPKECNIVALEYLR 175
+++ V+ L V + +W+ ++ + ++ + +E V ++ +
Sbjct: 65 FKELVASKAL-----EGVQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDFAK 119
Query: 176 TSMKMVRKLLEVLFKNLGVTLDEPEL-DAIIGFKMVN----MNFYPTCPNPELTVGVGRH 230
K+ +LL++L +NLG L++ L +A G K N ++ YP CP P+L G+ H
Sbjct: 120 RLEKLAEELLDLLCENLG--LEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAH 177
Query: 231 SDMGALTILLQDG-IGGLYVKVEEDIPDVGKKGEWMEIPPVPGALVINVGDTLQILSNGR 289
+D G + +L QD + GL + K G+W+++PP ++V+N+GD L++++NG+
Sbjct: 178 TDAGGIILLFQDDKVSGL---------QLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGK 228
Query: 290 YKSAEHXXXXXXXXXXXXIPIFTMPKPTVKIGPLPQLVEKEGSR----FREFLFQDY 342
YKS H + F P I P P LVEKE + +F+F DY
Sbjct: 229 YKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 101/255 (39%), Gaps = 19/255 (7%)
Query: 51 SICAQAPIDLSKLDGPNHEEVARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFF-- 108
S A P+ S L + A+++ + E GF + ++ + +++ D+A AFF
Sbjct: 3 STSAIDPVSFS-LYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFAL 61
Query: 109 -----NQTPGKKAVYRKGVSPSPLVKYGTSFVPEKEKALEWKDYISMVYTNDAEALQQWP 163
Q G K R + G KE +D A WP
Sbjct: 62 PVETKKQYAGVKGGARGYIPFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWP 121
Query: 164 KECNIVA--LEYLRTSMKMVR-KLLEVLFKNLGVTLDEPELDAIIGFKMVNMNFYPTCPN 220
E + +L S+ K+LE + L + D + G ++ + YP P
Sbjct: 122 AEIPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPK 181
Query: 221 PELTVGVGRHSDMGALTILLQDGIGGLYVKVEEDIPDVGKKGEWMEIPPVPGALVINVGD 280
V G H D+ +T+LL GGL V + + G+W+ I P PG LVIN+GD
Sbjct: 182 DATGVRAGAHGDINTITLLLGAEEGGLEV--------LDRDGQWLPINPPPGCLVINIGD 233
Query: 281 TLQILSNGRYKSAEH 295
L+ L+N S H
Sbjct: 234 XLERLTNNVLPSTVH 248
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 97/262 (37%), Gaps = 33/262 (12%)
Query: 72 ARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFFNQTPGKKAVYRKGVSPSPLVKYG 131
A++ + GF + NH + EL+E + AFFN + + + +
Sbjct: 15 AKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRETHDG----FF 70
Query: 132 TSFVPEKEKALEWKDYISMVYTNDAEALQQW---PKECNIVALEYLRTSMKMVRKLLEVL 188
+ + E K KD I Y + W P L Y + + +LLE +
Sbjct: 71 PASISETAKGHTVKD-IKEYY-----HVYPWGRIPDSLRANILAYYEKANTLASELLEWI 124
Query: 189 FK------NLGVTLDEPELDAIIGFKMVNMNFYPTCPNPEL--TVGVGRHSDMGALTILL 240
++ PE A ++ + YP E + H D+ +T+L
Sbjct: 125 ETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLP 184
Query: 241 QDGIGGLYVKVEEDIPDVGKKGEWMEIPPVPGALVINVGDTLQILSNGRYKSAEHXXX-- 298
GL VK K G W+++P G ++IN+GD LQ S+G + S H
Sbjct: 185 TANEPGLQVK--------AKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINP 236
Query: 299 --XXXXXXXXXIPIFTMPKPTV 318
+P+F P P+V
Sbjct: 237 EGTDKTKSRISLPLFLHPHPSV 258
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 98/270 (36%), Gaps = 43/270 (15%)
Query: 58 IDLSKLDGPNHE---EVARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFFNQTPGK 114
ID+S L G + VA+QI AS GFF VNHG+ V+ L H + TP +
Sbjct: 12 IDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH--MSITPEE 69
Query: 115 K---AVYRKGVSPSPLVKYGTSFVPEKEKALEWKDYISMVYTNDAEALQQ---------W 162
K A+ V+ G +KA+E Y++ +T D +Q W
Sbjct: 70 KWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVW 129
Query: 163 PKECNIVALE-YLRTSMKMVRKLLEVLFKNLGVTLDEPELDAIIGFK------MVNMNFY 215
P E + + V L L K + L + E FK V + Y
Sbjct: 130 PDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRY 189
Query: 216 PTC-PNPELTVGVGR---------HSDMGALTILLQDGIGGLYVKVEEDIPDVGKKGEWM 265
P P PE + H D+ +T+L Q + L V+ D+
Sbjct: 190 PYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADDT-- 247
Query: 266 EIPPVPGALVINVGDTLQILSNGRYKSAEH 295
+IN G + L+N YK+ H
Sbjct: 248 -------GYLINCGSYMAHLTNNYYKAPIH 270
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 98/270 (36%), Gaps = 43/270 (15%)
Query: 58 IDLSKLDGPNHE---EVARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFFNQTPGK 114
ID+S L G + VA+QI AS GFF VNHG+ V+ L H + TP +
Sbjct: 12 IDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH--MSITPEE 69
Query: 115 K---AVYRKGVSPSPLVKYGTSFVPEKEKALEWKDYISMVYTNDAEALQQ---------W 162
K A+ V+ G +KA+E Y++ +T D +Q W
Sbjct: 70 KWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVW 129
Query: 163 PKECNIVALE-YLRTSMKMVRKLLEVLFKNLGVTLDEPELDAIIGFK------MVNMNFY 215
P E + + V L L K + L + E FK V + Y
Sbjct: 130 PDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRY 189
Query: 216 PTC-PNPELTVGVGR---------HSDMGALTILLQDGIGGLYVKVEEDIPDVGKKGEWM 265
P P PE + H D+ +T+L Q + L V+ D+
Sbjct: 190 PYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADDT-- 247
Query: 266 EIPPVPGALVINVGDTLQILSNGRYKSAEH 295
+IN G + L+N YK+ H
Sbjct: 248 -------GYLINCGSYMAHLTNNYYKAPIH 270
>pdb|3CR3|A Chain A, Structure Of A Transient Complex Between Dha-Kinase
Subunits Dham And Dhal From Lactococcus Lactis
pdb|3CR3|B Chain B, Structure Of A Transient Complex Between Dha-Kinase
Subunits Dham And Dhal From Lactococcus Lactis
Length = 192
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 17/107 (15%)
Query: 60 LSKLDGP--NHEEVARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFFNQTPGKKAV 117
LS+LDGP + + A SET +V N G E+ K A ++ G
Sbjct: 25 LSELDGPIGDGDHGANXARGXSETXKALEVSNFGNVSEIF---KKVAXTLXSKVGG---- 77
Query: 118 YRKGVSPSPLVKYGTSFVPEKEKALEWKDYISMVYTNDAEALQQWPK 164
+ PL YG++F+ + A+E D ++Y EA+Q+ K
Sbjct: 78 -----ASGPL--YGSAFLAXSKTAIETLDTSELIYAG-LEAIQKRGK 116
>pdb|2K8E|A Chain A, Solution Nmr Structure Of Protein Of Unknown Function
Yegp From E. Coli. Ontario Center For Structural
Proteomics Target Ec0640_1_123 Northeast Structural
Genomics Consortium Target Et102
Length = 130
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 6 EDGDSLFNFVVQDGNG----------VKGMVDLGLSKVPQPYIQPQEERIDKKNAS 51
+ D+ F FV++ GNG K + G++ V PQEER +KK AS
Sbjct: 25 KSSDNQFRFVLKAGNGETILTSELYTSKTSAEKGIASVRSN--SPQEERYEKKTAS 78
>pdb|3L4B|C Chain C, Crystal Structure Of An Octomeric Two-Subunit Trka K+
Channel Ring Gating Assembly, Tm1088a:tm1088b, From
Thermotoga Maritima
pdb|3L4B|D Chain D, Crystal Structure Of An Octomeric Two-Subunit Trka K+
Channel Ring Gating Assembly, Tm1088a:tm1088b, From
Thermotoga Maritima
pdb|3L4B|G Chain G, Crystal Structure Of An Octomeric Two-Subunit Trka K+
Channel Ring Gating Assembly, Tm1088a:tm1088b, From
Thermotoga Maritima
pdb|3L4B|H Chain H, Crystal Structure Of An Octomeric Two-Subunit Trka K+
Channel Ring Gating Assembly, Tm1088a:tm1088b, From
Thermotoga Maritima
Length = 218
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 240 LQDGIGGLYVKVEEDIPDVGKKGEWMEIPPVP--------GALVINVGDTLQILSNGR 289
L+ GI L V VEED P VGKK + + +P G LV+ GDT +ILS +
Sbjct: 142 LEQGIEFLSVNVEEDSPVVGKKLKDLPLPRDSIIAAIVRGGVLVVPRGDT-EILSGDK 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,034,423
Number of Sequences: 62578
Number of extensions: 460977
Number of successful extensions: 918
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 892
Number of HSP's gapped (non-prelim): 14
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)