Query 017959
Match_columns 363
No_of_seqs 279 out of 1904
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 07:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gp6_A Leucoanthocyanidin diox 100.0 6.6E-81 2.2E-85 604.8 27.1 328 19-356 4-351 (356)
2 1w9y_A 1-aminocyclopropane-1-c 100.0 9.5E-76 3.2E-80 560.4 21.4 289 57-363 3-307 (319)
3 3oox_A Putative 2OG-Fe(II) oxy 100.0 2.5E-73 8.6E-78 542.8 27.3 283 57-350 6-309 (312)
4 1dcs_A Deacetoxycephalosporin 100.0 2.1E-70 7.1E-75 522.2 17.9 273 57-351 4-306 (311)
5 1odm_A Isopenicillin N synthas 100.0 1.4E-68 4.8E-73 513.9 23.9 276 57-350 8-324 (331)
6 3on7_A Oxidoreductase, iron/as 100.0 1.4E-66 4.9E-71 488.6 24.6 259 57-350 3-277 (280)
7 2rg4_A Uncharacterized protein 94.2 0.63 2.2E-05 40.8 12.3 43 262-316 166-209 (216)
8 3dkq_A PKHD-type hydroxylase S 91.7 0.21 7.1E-06 44.9 5.4 39 263-313 156-194 (243)
9 2hbt_A EGL nine homolog 1; pro 82.5 2.5 8.7E-05 37.7 6.7 184 71-313 15-212 (247)
10 3itq_A Prolyl 4-hydroxylase, a 75.2 10 0.00035 33.1 8.0 45 265-313 166-211 (216)
11 2jig_A Prolyl-4 hydroxylase; h 74.5 8 0.00027 33.6 7.3 47 264-314 170-217 (224)
12 3i3q_A Alpha-ketoglutarate-dep 74.4 17 0.00059 31.5 9.3 79 212-312 109-201 (211)
13 2iuw_A Alkylated repair protei 72.4 7.3 0.00025 34.5 6.5 89 212-312 130-228 (238)
14 3tht_A Alkylated DNA repair pr 66.9 7.2 0.00024 36.6 5.5 103 212-330 202-328 (345)
15 3s57_A Alpha-ketoglutarate-dep 65.3 15 0.00053 31.5 6.9 88 212-311 104-200 (204)
16 2opi_A L-fuculose-1-phosphate 52.8 6.5 0.00022 34.0 2.3 36 57-92 125-160 (212)
17 4ay7_A Methylcobalamin\: coenz 51.5 31 0.0011 31.9 7.0 44 66-109 301-348 (348)
18 2fk5_A Fuculose-1-phosphate al 50.7 11 0.00036 32.4 3.3 36 57-92 117-153 (200)
19 1pvt_A Sugar-phosphate aldolas 46.1 12 0.00039 33.0 2.9 36 57-92 161-196 (238)
20 1e4c_P L-fuculose 1-phosphate 45.6 9.9 0.00034 32.9 2.3 36 57-92 122-157 (215)
21 2v9l_A Rhamnulose-1-phosphate 42.6 13 0.00044 33.6 2.6 36 57-92 179-214 (274)
22 2irp_A Putative aldolase class 41.1 16 0.00055 31.3 3.0 35 57-92 139-176 (208)
23 1m5a_B Insulin B chain; alpha 40.4 27 0.00092 20.3 2.8 18 69-86 9-26 (30)
24 2dbn_A Hypothetical protein YB 39.7 8.3 0.00029 37.5 0.9 53 57-110 100-152 (461)
25 3rcq_A Aspartyl/asparaginyl be 36.2 29 0.00099 29.7 3.7 42 275-316 140-186 (197)
26 1otj_A Alpha-ketoglutarate-dep 32.3 52 0.0018 29.2 5.1 50 57-109 17-66 (283)
27 3ocr_A Class II aldolase/adduc 30.6 27 0.00093 31.4 2.8 36 57-92 156-192 (273)
28 3o2g_A Gamma-butyrobetaine dio 30.1 22 0.00077 33.6 2.2 51 57-110 122-173 (388)
29 1oih_A Putative alkylsulfatase 28.8 66 0.0023 28.9 5.1 51 57-110 27-78 (301)
30 3r1j_A Alpha-ketoglutarate-dep 28.3 75 0.0026 28.8 5.4 51 57-110 21-72 (301)
31 2vf9_A Coat protein; virion, R 25.7 13 0.00044 27.8 -0.3 18 282-299 49-66 (131)
32 2x4k_A 4-oxalocrotonate tautom 23.9 56 0.0019 21.2 2.8 25 176-200 18-42 (63)
33 3kt7_A PKHD-type hydroxylase T 23.8 90 0.0031 31.5 5.3 111 183-316 105-231 (633)
34 3m4r_A Uncharacterized protein 22.1 35 0.0012 29.6 1.8 34 58-92 156-190 (222)
35 3abf_A 4-oxalocrotonate tautom 21.8 52 0.0018 21.7 2.3 24 177-200 17-40 (64)
36 3pvj_A Alpha-ketoglutarate-dep 21.1 97 0.0033 27.6 4.6 50 57-109 15-64 (277)
37 2j01_J 50S ribosomal protein L 21.0 1.8E+02 0.006 24.0 5.9 38 68-105 6-45 (173)
38 1zav_A 50S ribosomal protein L 20.4 1.7E+02 0.0059 24.2 5.8 39 68-106 8-47 (180)
No 1
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=100.00 E-value=6.6e-81 Score=604.76 Aligned_cols=328 Identities=28% Similarity=0.518 Sum_probs=283.1
Q ss_pred CCchHHHhhcCCCCCCCCccCCCCCccccccc--cc--CCCCCceeeeCCC--C----ChHHHHHHHHHHHHHcCeEEEE
Q 017959 19 GNGVKGMVDLGLSKVPQPYIQPQEERIDKKNA--SI--CAQAPIDLSKLDG--P----NHEEVARQIARASETLGFFQVV 88 (363)
Q Consensus 19 ~~~v~~l~~~~~~~~p~~~~~p~~~~~~~~~~--~~--~~~~~iPvIDls~--~----~~~~~~~~l~~A~~~~GFF~l~ 88 (363)
.++||+|+++|+.+||++|++|+++++..... .. ....+||||||+. . .|.+++++|.+||++||||||+
T Consensus 4 ~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~ 83 (356)
T 1gp6_A 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI 83 (356)
T ss_dssp CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred cccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEe
Confidence 36799999999999999999998877653210 00 0012699999987 1 2566899999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHhccccCCCCCCceeecccccccccccCCcccceeeeeccch-hhhccCC---c
Q 017959 89 NHGVPVELLESLKDAAHAFFNQTPGKKAVYRKGVSPSPLVKYGTSFVPEKEKALEWKDYISMVYTNDA-EALQQWP---K 164 (363)
Q Consensus 89 nhGi~~~~~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~p~~-~~~~~wP---~ 164 (363)
||||+.++++++++++++||+||.|+|+++..........||+........+..||+|.|.+...|.. ..++.|| +
T Consensus 84 nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~ 163 (356)
T 1gp6_A 84 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS 163 (356)
T ss_dssp SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSST
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcch
Confidence 99999999999999999999999999999965432024578876544444567899999988766643 3467898 4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc-ccc---cccceeeecccCCCCCCCCCcCCccccccCCceEEEe
Q 017959 165 ECNIVALEYLRTSMKMVRKLLEVLFKNLGVTLDEPE-LDA---IIGFKMVNMNFYPTCPNPELTVGVGRHSDMGALTILL 240 (363)
Q Consensus 165 ~fr~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~-~~~---~~~~~l~~~~~YPp~~~~~~~~g~~~HtD~~~lTlL~ 240 (363)
.||+.+++|+++|.+|+.+||++|+++|||++++|. ... .....+| +||||||++++.++|+++|||+|+||||+
T Consensus 164 ~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lr-l~~YPp~~~~~~~~g~~~HtD~g~lTlL~ 242 (356)
T 1gp6_A 164 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMK-INYYPKCPQPELALGVEAHTDVSALTFIL 242 (356)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEE-EEEECCCSSTTTCCSEEEECCCSSEEEEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceee-eeecCCCCCcccccCcCCccCCCeEEEEE
Confidence 799999999999999999999999999999999998 443 2445788 99999999999999999999999999999
Q ss_pred eCCcCceEEEeCCCCCCCCCCCcEEEcCCCCCeEEEEccchhHHhhcCccccccccccCCCCCCeeEEEEeecCCCCC-e
Q 017959 241 QDGIGGLYVKVEEDIPDVGKKGEWMEIPPVPGALVINVGDTLQILSNGRYKSAEHRVRTTSSKSRVSIPIFTMPKPTV-K 319 (363)
Q Consensus 241 qd~v~GLqV~~~~~~~~~~~~g~W~~V~p~pgalvVniGD~le~lSnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~-~ 319 (363)
||+++||||++++ +|++|+|+||++||||||+||+||||+|||++|||++++..+|||++||++|+.|+ +
T Consensus 243 qd~v~GLQV~~~g---------~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~ 313 (356)
T 1gp6_A 243 HNMVPGLQLFYEG---------KWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 313 (356)
T ss_dssp ECSCCCEEEEETT---------EEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCE
T ss_pred EcCCCCeEEecCC---------cEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcE
Confidence 9999999999755 99999999999999999999999999999999999999889999999999999999 9
Q ss_pred EecCCcccccCC-CccCcccHHHHHHHHHhccCCCCcc
Q 017959 320 IGPLPQLVEKEG-SRFREFLFQDYRNNFFSNAHDGKKS 356 (363)
Q Consensus 320 i~Pl~~~v~~~~-~~y~~~~~~ey~~~~~~~~~~g~~~ 356 (363)
|+|+++++++++ ++|+++|++||+..++.++++||..
T Consensus 314 i~pl~~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~~ 351 (356)
T 1gp6_A 314 LKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEELV 351 (356)
T ss_dssp ECCCGGGCCSSSCCSSCCEEHHHHHHHHHHHHHHHHC-
T ss_pred EeCChhhcCCCCCccCCCccHHHHHHHHHHhccCcchh
Confidence 999999999888 9999999999999998887776643
No 2
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=100.00 E-value=9.5e-76 Score=560.40 Aligned_cols=289 Identities=26% Similarity=0.506 Sum_probs=253.1
Q ss_pred CceeeeCCC---CChHHHHHHHHHHHHHcCeEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhccccCCCCCCceeeccc
Q 017959 57 PIDLSKLDG---PNHEEVARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFFNQTPGKKAVYRKGVSPSPLVKYGTS 133 (363)
Q Consensus 57 ~iPvIDls~---~~~~~~~~~l~~A~~~~GFF~l~nhGi~~~~~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~gy~~~ 133 (363)
+||||||+. ..+.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... ..||+..
T Consensus 3 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~-----~~Gy~~~ 77 (319)
T 1w9y_A 3 NFPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVA-----SKALEGV 77 (319)
T ss_dssp CCCEEEGGGGGSTTHHHHHHHHHHHHHHTSEEEEESCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHTTC
T ss_pred CCCEEECcccCcccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccC-----CCCCCcc
Confidence 599999986 45788999999999999999999999999999999999999999999999997432 2367432
Q ss_pred ccccccccCCcccceeeeeccchhhhccCC---cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc-ccc---ccc
Q 017959 134 FVPEKEKALEWKDYISMVYTNDAEALQQWP---KECNIVALEYLRTSMKMVRKLLEVLFKNLGVTLDEPE-LDA---IIG 206 (363)
Q Consensus 134 ~~~~~~~~~d~~e~~~~~~~p~~~~~~~wP---~~fr~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~-~~~---~~~ 206 (363)
. ...+..||+|.|.+...|.. .++.|| +.||+.+++|+++|.+|+.+||++|+++|||++++|. ... ...
T Consensus 78 -~-~e~~~~d~ke~~~~~~~p~~-~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~ 154 (319)
T 1w9y_A 78 -Q-AEVTDMDWESTFFLKHLPIS-NISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPN 154 (319)
T ss_dssp -C-CCGGGCCCCEEEEEEEESCC-GGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHTTTCCE
T ss_pred -c-ccCCCCChhhheeeecCCcc-cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcCCcc
Confidence 1 23457899999988765542 467788 4799999999999999999999999999999999987 332 233
Q ss_pred ceeeecccCCCCCCCCCcCCccccccCCceEEEeeC-CcCceEEEeCCCCCCCCCCCcEEEcCCCCCeEEEEccchhHHh
Q 017959 207 FKMVNMNFYPTCPNPELTVGVGRHSDMGALTILLQD-GIGGLYVKVEEDIPDVGKKGEWMEIPPVPGALVINVGDTLQIL 285 (363)
Q Consensus 207 ~~l~~~~~YPp~~~~~~~~g~~~HtD~~~lTlL~qd-~v~GLqV~~~~~~~~~~~~g~W~~V~p~pgalvVniGD~le~l 285 (363)
..+| +||||||++++.++|+++|||+|+||||+|| +++||||++++ +|++|+|+||++||||||+||+|
T Consensus 155 ~~lr-l~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~~v~GLQV~~~g---------~Wi~V~p~pgalvVNiGD~l~~~ 224 (319)
T 1w9y_A 155 FGTK-VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG---------QWIDVPPMRHSIVVNLGDQLEVI 224 (319)
T ss_dssp EEEE-EEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEETT---------EEEECCCCTTCEEEEECHHHHHH
T ss_pred ceeE-EEecCCCcccccccccccccCCCceEEEEecCCCCeeeEeeCC---------eEEEcccCCCcEEEEhHHHHHHH
Confidence 5688 9999999999999999999999999999996 79999998765 99999999999999999999999
Q ss_pred hcCccccccccccCCCCCCeeEEEEeecCCCCCeEecCCcccccC---C-CccCcccHHHHHHHHHhccCCCCcc-cccc
Q 017959 286 SNGRYKSAEHRVRTTSSKSRVSIPIFTMPKPTVKIGPLPQLVEKE---G-SRFREFLFQDYRNNFFSNAHDGKKS-LDFA 360 (363)
Q Consensus 286 SnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~i~Pl~~~v~~~---~-~~y~~~~~~ey~~~~~~~~~~g~~~-~~~~ 360 (363)
|||+|||++|||++++.++|||+|||++|+.|++|.|++++++++ + ++|+++|++||+..++++.+.||.. ++.+
T Consensus 225 SnG~~kS~~HRVv~~~~~~R~Sia~F~~p~~d~~i~pl~~l~~~~~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~~~~ 304 (319)
T 1w9y_A 225 TNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEPRFEAM 304 (319)
T ss_dssp TTTSSCCCCEEECCCSSSCCEEEEEEEECCTTCEECCCGGGC--------CCCCCEEHHHHHHTTTTTTCSSHHHHHHHH
T ss_pred hCCeeecccceecCCCCCCceEEEEEecCCCCCeEeCchhhcCcccccCccccCcEeHHHHHHHHHhhhcCcchhHHHHH
Confidence 999999999999999889999999999999999999999999987 6 8999999999999999999988875 6777
Q ss_pred ccC
Q 017959 361 RAI 363 (363)
Q Consensus 361 ~~~ 363 (363)
|++
T Consensus 305 ~~~ 307 (319)
T 1w9y_A 305 KAM 307 (319)
T ss_dssp HHC
T ss_pred HHH
Confidence 764
No 3
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=100.00 E-value=2.5e-73 Score=542.85 Aligned_cols=283 Identities=24% Similarity=0.305 Sum_probs=243.6
Q ss_pred CceeeeCCC--CChHHHHHHHHHHHHHcCeEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhccccCCCCCCceeecccc
Q 017959 57 PIDLSKLDG--PNHEEVARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFFNQTPGKKAVYRKGVSPSPLVKYGTSF 134 (363)
Q Consensus 57 ~iPvIDls~--~~~~~~~~~l~~A~~~~GFF~l~nhGi~~~~~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~gy~~~~ 134 (363)
+||||||+. .++.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... . ....||....
T Consensus 6 ~iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~-~-~~~~Gy~~~g 83 (312)
T 3oox_A 6 AIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGV-K-GGARGYIPFG 83 (312)
T ss_dssp SSCCEETHHHHHCHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSS-G-GGTSEEECCC
T ss_pred CCCeEEChHhcccHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccC-C-CCcccccccc
Confidence 699999986 46788999999999999999999999999999999999999999999999998654 2 3456783211
Q ss_pred -c-ccccccCCcccceeeeec-cc-h-----hhhccCC---cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc-c
Q 017959 135 -V-PEKEKALEWKDYISMVYT-ND-A-----EALQQWP---KECNIVALEYLRTSMKMVRKLLEVLFKNLGVTLDEPE-L 201 (363)
Q Consensus 135 -~-~~~~~~~d~~e~~~~~~~-p~-~-----~~~~~wP---~~fr~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~-~ 201 (363)
. .......||+|.|.+... +. . ..+|.|| +.||+++++|+++|.+|+.+||++|+++|||++++|. .
T Consensus 84 ~e~~~~~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~ 163 (312)
T 3oox_A 84 VETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDFFKPT 163 (312)
T ss_dssp CCCSTTSCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHH
T ss_pred ceecCCCCCCCceeeeEeecCCCcCCcchhccCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 1 112345799999876431 11 1 1257898 5799999999999999999999999999999999998 4
Q ss_pred cccccceeeecccCCCCCCCCCcCCccccccCCceEEEeeCCcCceEEEeCCCCCCCCCCCcEEEcCCCCCeEEEEccch
Q 017959 202 DAIIGFKMVNMNFYPTCPNPELTVGVGRHSDMGALTILLQDGIGGLYVKVEEDIPDVGKKGEWMEIPPVPGALVINVGDT 281 (363)
Q Consensus 202 ~~~~~~~l~~~~~YPp~~~~~~~~g~~~HtD~~~lTlL~qd~v~GLqV~~~~~~~~~~~~g~W~~V~p~pgalvVniGD~ 281 (363)
.......+| +||||||+.++..+|+++|||+|+||||+||+++||||+..+ |+|++|+|+||++||||||+
T Consensus 164 ~~~~~~~lr-~~~Ypp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLqV~~~~--------g~W~~V~p~pg~~vVNiGD~ 234 (312)
T 3oox_A 164 VQDGNSVLR-LLHYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRD--------GQWLPINPPPGCLVINIGDM 234 (312)
T ss_dssp HTTCCCEEE-EEEECCCSSCCC--CEEEECCCSSEEEEECCTTSCEEEECTT--------SCEEECCCCSSCEEEEECHH
T ss_pred hcCCcceee-eEecCCCCCCcCCcCccceecCceEEEEeEcCcCceEEECCC--------CcEEECCCCCCeEEEEhHHH
Confidence 444556788 999999998765699999999999999999999999998766 69999999999999999999
Q ss_pred hHHhhcCccccccccccCCC----CCCeeEEEEeecCCCCCeEecCCcccccCC-CccC-cccHHHHHHHHHhcc
Q 017959 282 LQILSNGRYKSAEHRVRTTS----SKSRVSIPIFTMPKPTVKIGPLPQLVEKEG-SRFR-EFLFQDYRNNFFSNA 350 (363)
Q Consensus 282 le~lSnG~~kS~~HRVv~~~----~~~R~Sia~F~~P~~d~~i~Pl~~~v~~~~-~~y~-~~~~~ey~~~~~~~~ 350 (363)
||+||||+|||++|||+.+. ..+|||+|||++|+.|++|+|+++|+++++ ++|+ ++|++||+..+++..
T Consensus 235 l~~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~t~~eyl~~r~~~~ 309 (312)
T 3oox_A 235 LERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRLREI 309 (312)
T ss_dssp HHHHTTTSSCCCCEEECCCCGGGTTSCEEECCEEECCCTTCEECCCGGGCCSSSCCSCSSCEEHHHHHHHHHHHH
T ss_pred HHHHhCCeecCCCceEeCCCccCCCCCEEEEEEEecCCCCcEEecCccccCCCCcccCCCCeeHHHHHHHHHHHh
Confidence 99999999999999998753 457999999999999999999999999988 8999 999999999988743
No 4
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=100.00 E-value=2.1e-70 Score=522.17 Aligned_cols=273 Identities=17% Similarity=0.259 Sum_probs=225.2
Q ss_pred CceeeeCCC--CChHHHHHHHHHHHHHcCeEEEEcCCCCHHHHHHHHHHHHHHhcCC-HHHHhccccCCCCCCceeeccc
Q 017959 57 PIDLSKLDG--PNHEEVARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFFNQT-PGKKAVYRKGVSPSPLVKYGTS 133 (363)
Q Consensus 57 ~iPvIDls~--~~~~~~~~~l~~A~~~~GFF~l~nhGi~~~~~~~~~~~~~~FF~lP-~eeK~~~~~~~~~~~~~gy~~~ 133 (363)
+||||||+. .... .++|.+||++||||||+||||+.++++++++++++||+|| .|+|+++..... ....||+..
T Consensus 4 ~iPvIDls~l~~~~~--~~~l~~A~~~~GFf~l~nHGi~~~l~~~~~~~~~~fF~lP~~e~K~~~~~~~~-~~~~Gy~~~ 80 (311)
T 1dcs_A 4 TVPTFSLAELQQGLH--QDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVP-TMRRGFTGL 80 (311)
T ss_dssp CCCEEEHHHHHTTCS--HHHHHHHHHHTCEEEEESSSCCHHHHHHHHHHHHHHHHHCCHHHHHHTBCSSC-CSSSEEEEC
T ss_pred CCcEEEchhhcCCCH--HHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCcHHHhHHhhccCC-CCCCceeec
Confidence 699999985 2111 2399999999999999999999999999999999999999 999999976543 456788543
Q ss_pred ccc------cccccCCcccceeeeeccchhhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCcccc
Q 017959 134 FVP------EKEKALEWKDYISMVYTNDAEALQQWP-KECNIVALEYLRTSMKMVRKLLEVLFKNLGV----TLDEPELD 202 (363)
Q Consensus 134 ~~~------~~~~~~d~~e~~~~~~~p~~~~~~~wP-~~fr~~~~~y~~~~~~l~~~ll~~l~~~Lgl----~~~~~~~~ 202 (363)
... ...+..||+|.|.+... ++.|| +.||+.+++|+++|.+|+.+||++|+++||| ++++|...
T Consensus 81 ~~e~~~~~~~~~~~~d~~E~~~~~~~-----~n~wP~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~f~~~ 155 (311)
T 1dcs_A 81 ESESTAQITNTGSYSDYSMCYSMGTA-----DNLFPSGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDC 155 (311)
T ss_dssp -----------------CEEEEECSS-----SCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCHHHHHSC
T ss_pred cccccccccCCCCCCCcceeeeccCC-----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcHhHHhhc
Confidence 221 12457899999987543 35676 6799999999999999999999999999999 66666511
Q ss_pred ccccceeeecccCCCCCCCC--C--cCCccccccCCceEEEeeC-CcCc---eEEEeCCCCCCCCCCCcEEEcCCCCCeE
Q 017959 203 AIIGFKMVNMNFYPTCPNPE--L--TVGVGRHSDMGALTILLQD-GIGG---LYVKVEEDIPDVGKKGEWMEIPPVPGAL 274 (363)
Q Consensus 203 ~~~~~~l~~~~~YPp~~~~~--~--~~g~~~HtD~~~lTlL~qd-~v~G---LqV~~~~~~~~~~~~g~W~~V~p~pgal 274 (363)
...+| +||||||++++ . .+|+++|||+|+||||+|| +++| |||++++ +|++|+|+||++
T Consensus 156 ---~~~lr-l~~YPp~~~~~~~~~~~~g~~~HtD~g~lTlL~qd~~v~G~~~LqV~~~g---------~W~~V~p~pg~l 222 (311)
T 1dcs_A 156 ---EPLLR-FRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGG---------AFTDLPYRPDAV 222 (311)
T ss_dssp ---CCEEE-EEEECC-----------CCEEEEEECSSEEEEEEECCTTCCCCEEEEETT---------EEEECCCCTTCE
T ss_pred ---chhhh-eecCCCCCcccccCccccccccccCCCeEEEEecCCCCCCceeEEEEeCC---------EEEeCcCCCCeE
Confidence 45688 99999999874 3 6789999999999999999 8999 9999954 999999999999
Q ss_pred EEEccchhHHhhcCccccccccccCCC-----CCCeeEEEEeecCCCCCeEecCCcccccCC-Ccc--CcccHHHHHHHH
Q 017959 275 VINVGDTLQILSNGRYKSAEHRVRTTS-----SKSRVSIPIFTMPKPTVKIGPLPQLVEKEG-SRF--REFLFQDYRNNF 346 (363)
Q Consensus 275 vVniGD~le~lSnG~~kS~~HRVv~~~-----~~~R~Sia~F~~P~~d~~i~Pl~~~v~~~~-~~y--~~~~~~ey~~~~ 346 (363)
||||||+||+||||+|||++|||+.++ ..+|||++||++|+.|++|. +++++++++ ++| +++|++||+..+
T Consensus 223 vVNiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~~R~Si~~F~~p~~d~~i~-l~~~~~~~~p~~y~~~~~t~~ey~~~~ 301 (311)
T 1dcs_A 223 LVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNADFTFS-VPLARECGFDVSLDGETATFQDWIGGN 301 (311)
T ss_dssp EEEECHHHHHHTTSCSCCCCEEECCC----CTTCCEEEEEEEECCCTTCEEE-HHHHHHTTCCCCCCSSEEEHHHHHCSS
T ss_pred EEEHHHHHHHHhCCcccCCCceEeCCCcccCCCCCeEEEEEEEcCCCCcEEe-CCcccCCCCccccCCCCccHHHHHHHH
Confidence 999999999999999999999999987 67999999999999999999 999998888 999 999999999887
Q ss_pred HhccC
Q 017959 347 FSNAH 351 (363)
Q Consensus 347 ~~~~~ 351 (363)
+++.+
T Consensus 302 ~~~~~ 306 (311)
T 1dcs_A 302 YVNIR 306 (311)
T ss_dssp CCCEE
T ss_pred HHHHh
Confidence 76544
No 5
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=100.00 E-value=1.4e-68 Score=513.94 Aligned_cols=276 Identities=21% Similarity=0.257 Sum_probs=233.6
Q ss_pred CceeeeCCC------CChHHHHHHHHHHHHHcCeEEEEcCCCCHHHHHHHHHHHHHH-hcCCHHHHhccccCCCCCCcee
Q 017959 57 PIDLSKLDG------PNHEEVARQIARASETLGFFQVVNHGVPVELLESLKDAAHAF-FNQTPGKKAVYRKGVSPSPLVK 129 (363)
Q Consensus 57 ~iPvIDls~------~~~~~~~~~l~~A~~~~GFF~l~nhGi~~~~~~~~~~~~~~F-F~lP~eeK~~~~~~~~~~~~~g 129 (363)
+||||||+. ..+.+++++|.+||++||||||+|||| +++++++++++| |+||.|+|+++.. .+..+
T Consensus 8 ~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi---l~~~~~~~~~~F~F~lP~eeK~~~~~----~Gy~~ 80 (331)
T 1odm_A 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI---NVQRLSQKTKEFHMSITPEEKWDLAI----RAYNK 80 (331)
T ss_dssp CCCEEECGGGGSSCHHHHHHHHHHHHHHHHTTSEEEEESCCC---CHHHHHHHHHHHHHHCCHHHHHHHBC----TTTCT
T ss_pred CCCEEEchHhcCCChHHHHHHHHHHHHHHHhCCEEEEEccce---eHHHHHHHHHhccCCCCHHHHHhhhh----cCCCc
Confidence 699999986 135678999999999999999999999 999999999999 9999999999843 11112
Q ss_pred ecccc-cc----cccccCCcccceeeeeccc--h---------hhhccCCc-----chHHHHHHHHHHHHHHHHHHHHHH
Q 017959 130 YGTSF-VP----EKEKALEWKDYISMVYTND--A---------EALQQWPK-----ECNIVALEYLRTSMKMVRKLLEVL 188 (363)
Q Consensus 130 y~~~~-~~----~~~~~~d~~e~~~~~~~p~--~---------~~~~~wP~-----~fr~~~~~y~~~~~~l~~~ll~~l 188 (363)
++... .. ...+..||+|.|.+..... . ..++.||. .||+.+++|+++|.+|+.+||++|
T Consensus 81 ~~~e~~~~~~~~~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~l 160 (331)
T 1odm_A 81 EHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGY 160 (331)
T ss_dssp TCTTCSSSEEECCBTTTBCCEEEEECCTTCCTTSHHHHTTCTTCCCCCCCCTTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccccccccCCCCChhheEecccCCccccccccccccccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 00 0124679999998754321 1 12578884 699999999999999999999999
Q ss_pred HHhcCCCCCCcc-ccccccceeee--cccCC------C---CCCCCC-cCCccccccCCceEEEeeCCcCceEEEeCCCC
Q 017959 189 FKNLGVTLDEPE-LDAIIGFKMVN--MNFYP------T---CPNPEL-TVGVGRHSDMGALTILLQDGIGGLYVKVEEDI 255 (363)
Q Consensus 189 ~~~Lgl~~~~~~-~~~~~~~~l~~--~~~YP------p---~~~~~~-~~g~~~HtD~~~lTlL~qd~v~GLqV~~~~~~ 255 (363)
+++|||++++|. .... .....+ +|||| | |++++. .+|+++|||+|+||||+||+++||||+.++
T Consensus 161 a~~Lgl~~~~f~~~~~~-~~~~lr~~l~~YP~~~~~~p~~~~~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~~~-- 237 (331)
T 1odm_A 161 ALALGKEENFFARHFKP-DDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAA-- 237 (331)
T ss_dssp HHHTTSCTTTTGGGCCT-TTCCCEEEEEEECCCSSCCGGGCEECTTSCEEEEEEECCSSSEEEEEECSSCCEEEEETT--
T ss_pred HHHhCCCHHHHHHHhcC-cHHHHHHHHhhCCCcccccccccCCCccccccccccccCCCeEEEEeeCCCCCEEEEcCC--
Confidence 999999999998 4333 223344 78999 8 888887 899999999999999999999999999888
Q ss_pred CCCCCCCcEEEcCCCCCeEEEEccchhHHhhcCccccccccccCCCCCCeeEEEEeecCCCCCeEecCCcccccCCCccC
Q 017959 256 PDVGKKGEWMEIPPVPGALVINVGDTLQILSNGRYKSAEHRVRTTSSKSRVSIPIFTMPKPTVKIGPLPQLVEKEGSRFR 335 (363)
Q Consensus 256 ~~~~~~g~W~~V~p~pgalvVniGD~le~lSnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~i~Pl~~~v~~~~~~y~ 335 (363)
| |++|+|+||++||||||+||+||||+|||++|||+. +..+|||+|||++|+.|++|.|+++++++++++|+
T Consensus 238 ------g-Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~-~~~~R~Sia~F~~P~~d~~i~pl~~~~~~~~~~y~ 309 (331)
T 1odm_A 238 ------G-YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKW-VNAERQSLPFFVNLGYDSVIDPFDPREPNGKSDRE 309 (331)
T ss_dssp ------E-EEECCCCTTSEEEEECHHHHHHTTTSSCCCCEEEEC-CCSCEEEEEEEECCCTTCBCCCCCTTSTTCCCSSC
T ss_pred ------C-eEECCCCCCeEEEEccHHHHHHhCCEeeCCCceeCC-CCCCEEEEEEEEcCCCCCEEeCCCccccccccCCC
Confidence 7 999999999999999999999999999999999986 47899999999999999999999999987668999
Q ss_pred cccHHHHHHHHHhcc
Q 017959 336 EFLFQDYRNNFFSNA 350 (363)
Q Consensus 336 ~~~~~ey~~~~~~~~ 350 (363)
++|++||++.++++.
T Consensus 310 ~~t~~e~l~~~~~~~ 324 (331)
T 1odm_A 310 PLSYGDYLQNGLVSL 324 (331)
T ss_dssp CCBHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHH
Confidence 999999999887654
No 6
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=100.00 E-value=1.4e-66 Score=488.58 Aligned_cols=259 Identities=23% Similarity=0.352 Sum_probs=217.7
Q ss_pred CceeeeCCCCChHHHHHHHHHHHHHcCeEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhccccCCCCCCceeecccc-c
Q 017959 57 PIDLSKLDGPNHEEVARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFFNQTPGKKAVYRKGVSPSPLVKYGTSF-V 135 (363)
Q Consensus 57 ~iPvIDls~~~~~~~~~~l~~A~~~~GFF~l~nhGi~~~~~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~gy~~~~-~ 135 (363)
+||||||+.. +.+++|.+||++||||||+||||+.++++++++++++||+| |+|+++.... ....||.... .
T Consensus 3 ~IPvIDls~~---~~~~~l~~A~~~~GFF~v~nHGi~~~li~~~~~~~~~FF~l--e~K~k~~~~~--~~~~GY~~~~~~ 75 (280)
T 3on7_A 3 KLETIDYRAA---DSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNS--EAKNEFMFNR--ETHDGFFPASIS 75 (280)
T ss_dssp -CCEEETTST---THHHHHHHHHHHHSEEEEESCSSCHHHHHHHHHHHHHHHTS--GGGGGGBCCT--TTCCEEECCC--
T ss_pred CCCEEECCCh---hHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHhhh--HHHHHhccCC--CCCCccccCccc
Confidence 6999999863 36899999999999999999999999999999999999998 8999985432 4567885432 1
Q ss_pred --ccccccCCcccceeeeeccchhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCc---c-cccccc-
Q 017959 136 --PEKEKALEWKDYISMVYTNDAEALQQWPKECNIVALEYLRTSMKMVRKLLEVLFKNLGVT--LDEP---E-LDAIIG- 206 (363)
Q Consensus 136 --~~~~~~~d~~e~~~~~~~p~~~~~~~wP~~fr~~~~~y~~~~~~l~~~ll~~l~~~Lgl~--~~~~---~-~~~~~~- 206 (363)
.......||+|.|.++ |. +.||+.||+.+++|+++|.+|+.+||++|+++||++ +++. . ......
T Consensus 76 e~~~~~~~~D~kE~~~~~--p~----~~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~ 149 (280)
T 3on7_A 76 ETAKGHTVKDIKEYYHVY--PW----GRIPDSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEMIANSHK 149 (280)
T ss_dssp ------CCCCSCEEEEEC--TT----SCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHTTCSSCHHHHHTTCSS
T ss_pred cccCCCCcccHHHHHhcC--CC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhhhHHHHHHhcCCcc
Confidence 1122357999998763 31 246789999999999999999999999999999986 3442 2 222233
Q ss_pred ceeeecccCCCCCCCC--CcCCccccccCCceEEEeeCCcCceEEEeCCCCCCCCCCCcEEEcCCCCCeEEEEccchhHH
Q 017959 207 FKMVNMNFYPTCPNPE--LTVGVGRHSDMGALTILLQDGIGGLYVKVEEDIPDVGKKGEWMEIPPVPGALVINVGDTLQI 284 (363)
Q Consensus 207 ~~l~~~~~YPp~~~~~--~~~g~~~HtD~~~lTlL~qd~v~GLqV~~~~~~~~~~~~g~W~~V~p~pgalvVniGD~le~ 284 (363)
..+| +||||||+.++ .++|+++|||+|+||||+||+++||||+..+ |+|++|+|+||++||||||+||+
T Consensus 150 ~~lr-~~~YP~~~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLqV~~~~--------g~W~~V~p~pg~~vVNiGD~l~~ 220 (280)
T 3on7_A 150 TLLR-ILHYPPMTGDEEMGAIRAAAHEDINLITVLPTANEPGLQVKAKD--------GSWLDVPSDFGNIIINIGDMLQE 220 (280)
T ss_dssp CEEE-EEEECCCCTTCCCCSEEEEEECCCSSEEEEECCSCCCEEEECTT--------SCEEECCCCTTCEEEEECHHHHH
T ss_pred ceEE-EEECCCCCCccccCcccccCCCCCCeEEEEEecCCCCeEEEcCC--------CCEEECcCCCCEEEEEcChHHHH
Confidence 5688 99999999765 4789999999999999999999999999765 69999999999999999999999
Q ss_pred hhcCccccccccccCCC----CCCeeEEEEeecCCCCCeEecCCcccccCCCccCcccHHHHHHHHHhcc
Q 017959 285 LSNGRYKSAEHRVRTTS----SKSRVSIPIFTMPKPTVKIGPLPQLVEKEGSRFREFLFQDYRNNFFSNA 350 (363)
Q Consensus 285 lSnG~~kS~~HRVv~~~----~~~R~Sia~F~~P~~d~~i~Pl~~~v~~~~~~y~~~~~~ey~~~~~~~~ 350 (363)
||||+|||++|||+.++ ..+|||+|||++|+.|++|.| ++|++||+.++++..
T Consensus 221 ~Tng~~kS~~HRVv~~~~~~~~~~R~Si~~F~~P~~d~~i~p-------------~ita~~~l~~rl~~~ 277 (280)
T 3on7_A 221 ASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVLSE-------------RYTADSYLMERLREL 277 (280)
T ss_dssp HTTTSSCCCCEEEECCTTCCTTSCEEECCEEECCCTTCBCSS-------------SCBHHHHHHHHHHHT
T ss_pred HhCCcccCCCceEeCCCCCCCCCCeEEEEEEEcCCCCCEECC-------------CccHHHHHHHHHHHh
Confidence 99999999999998863 458999999999999999986 689999999988753
No 7
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=94.20 E-value=0.63 Score=40.84 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=34.7
Q ss_pred CcEEEcCCCCCeEEEEccchhHHhhcCccccccccccCCCC-CCeeEEEEeecCCC
Q 017959 262 GEWMEIPPVPGALVINVGDTLQILSNGRYKSAEHRVRTTSS-KSRVSIPIFTMPKP 316 (363)
Q Consensus 262 g~W~~V~p~pgalvVniGD~le~lSnG~~kS~~HRVv~~~~-~~R~Sia~F~~P~~ 316 (363)
..+..|+|.+|.+||.-+.+ .|+|..+.. .+|+||+|.+.+..
T Consensus 166 ~~~~~i~P~~G~lvlFpS~l------------~H~V~p~~~~~~RiSIsFN~~~~~ 209 (216)
T 2rg4_A 166 RTFRSVAPKVGDVLLWESWL------------RHEVPMNMAEEDRISVSFNYAWGE 209 (216)
T ss_dssp CSEEEECCCTTEEEEEETTS------------CEEECCCCSSSCEEEEEEEEEC--
T ss_pred CCeeEecCCCCeEEEECCCC------------EEeccCCCCCCCEEEEEEEeecCC
Confidence 46779999999999987753 899998754 69999999988754
No 8
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}
Probab=91.73 E-value=0.21 Score=44.88 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=31.1
Q ss_pred cEEEcCCCCCeEEEEccchhHHhhcCccccccccccCCCCCCeeEEEEeec
Q 017959 263 EWMEIPPVPGALVINVGDTLQILSNGRYKSAEHRVRTTSSKSRVSIPIFTM 313 (363)
Q Consensus 263 ~W~~V~p~pgalvVniGD~le~lSnG~~kS~~HRVv~~~~~~R~Sia~F~~ 313 (363)
.=..|+|..|.+|+.-. ..+|+|..-....|++++.+++
T Consensus 156 ~~~~V~P~~G~~v~F~s------------~~lH~v~pV~~G~R~~~~~Wi~ 194 (243)
T 3dkq_A 156 GQQSIKLSAGSLVLYPS------------SSLHQVTPVLSGERTAAFMWLQ 194 (243)
T ss_dssp EEEEECCCTTCEEEEET------------TSEEEECCEEEECEEEEEEEEE
T ss_pred CcEEEecCCCEEEEECC------------CCeEcCccccccCEEEEEEehh
Confidence 34689999999999743 3689998755569999999876
No 9
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=82.53 E-value=2.5 Score=37.74 Aligned_cols=184 Identities=18% Similarity=0.232 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHcCeEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhccccCCCCCCceeecccccccccccCCcc-ccee
Q 017959 71 VARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFFNQTPGKKAVYRKGVSPSPLVKYGTSFVPEKEKALEWK-DYIS 149 (363)
Q Consensus 71 ~~~~l~~A~~~~GFF~l~nhGi~~~~~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~gy~~~~~~~~~~~~d~~-e~~~ 149 (363)
....+.+++.+.|++++.| =+++++++.+.+.++..-. .-.+ .. ...+-. .. ....+.+ |.+
T Consensus 15 ~~~~i~~~L~~~g~~Vid~-fLs~ee~~~L~~~~~~~~~-----~g~~--~~---a~i~~~-~~----~~~~~iR~d~i- 77 (247)
T 2hbt_A 15 ALEYIVPCMNKHGICVVDD-FLGKETGQQIGDEVRALHD-----TGKF--TD---GQLVSQ-KS----DSSKDIRGDKI- 77 (247)
T ss_dssp HHHTHHHHHHHTSEEEESS-SSCHHHHHHHHHHHHHHHH-----TTCS--CS---CCEEEC-CS----SSTTCEECCEE-
T ss_pred hHHHHHHHhccCCEEEECC-CCCHHHHHHHHHHHHhhhh-----cCCc--cc---cccccc-cc----cccccccccce-
Confidence 4467889999999887554 4899999999998877431 1111 11 111110 00 0001111 222
Q ss_pred eeeccchhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeeecccCCCCCCCCCcCCccc
Q 017959 150 MVYTNDAEALQQWPKECNIVALEYLRTSMKMVRKLLEVLFKNLGVTLDEPELDAIIGFKMVNMNFYPTCPNPELTVGVGR 229 (363)
Q Consensus 150 ~~~~p~~~~~~~wP~~fr~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~l~~~~~YPp~~~~~~~~g~~~ 229 (363)
.+..+.. | .+ +.+..|.+.+.++.. .+...||+.. ... ...+. +.+|++. .-...+
T Consensus 78 ~wl~~~~------~-~~-~~~~~l~~~i~~l~~----~ln~~lGl~~----i~~--~~e~~-~~~Y~~~-----G~~y~~ 133 (247)
T 2hbt_A 78 TWIEGKE------P-GC-ETIGLLMSSMDDLIR----HCNGKLGSYK----ING--RTKAM-VACYPGN-----GTGYVR 133 (247)
T ss_dssp EEECSCS------T-TC-HHHHHHHHHHHHHHH----HTTTTSTTCC----EEE--ECCEE-EEEECSS-----SCCEEE
T ss_pred eeecccc------c-ch-hHHHHHHHHHHHHHH----HHhhhcCccc----ccc--cceEE-EEEecCC-----CCcccc
Confidence 2222211 0 01 122334444444332 2222344311 000 11133 5567641 123467
Q ss_pred cccCC-----ceEEEee--CC-----cCc-eEEEeCCCCCCCCCCCcEEEcCCCCCeEEEEccchhHHhhcCcccccccc
Q 017959 230 HSDMG-----ALTILLQ--DG-----IGG-LYVKVEEDIPDVGKKGEWMEIPPVPGALVINVGDTLQILSNGRYKSAEHR 296 (363)
Q Consensus 230 HtD~~-----~lTlL~q--d~-----v~G-LqV~~~~~~~~~~~~g~W~~V~p~pgalvVniGD~le~lSnG~~kS~~HR 296 (363)
|.|.. .+|+++. ++ .|| |.+...++ +....|.|..|.+|+.-.+. -.+|.
T Consensus 134 H~D~~~~~~R~~T~vlYLN~~w~~~~~GG~l~~~~~~~-------~~~~~v~P~~grlv~F~s~~----------~~~H~ 196 (247)
T 2hbt_A 134 HVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGK-------AQFADIEPKFDRLLFFWSDR----------RNPHE 196 (247)
T ss_dssp ECSSCSCCSEEEEEEEECBTTCCHHHHBCCEEECCTTC-------SSCEEECCBTTEEEEEECST----------TCCEE
T ss_pred cccCCCCCCceEEEEEEeCCCCCCCCCceeEEEecCCC-------CceEEEEcCCCEEEEEecCC----------Cceee
Confidence 77762 5788876 21 144 56665431 25789999999999987532 15899
Q ss_pred ccCCCCCCeeEEEEeec
Q 017959 297 VRTTSSKSRVSIPIFTM 313 (363)
Q Consensus 297 Vv~~~~~~R~Sia~F~~ 313 (363)
|.. ....|+||+..+.
T Consensus 197 V~p-~~~~R~sit~W~~ 212 (247)
T 2hbt_A 197 VQP-AYATRYAITVWYF 212 (247)
T ss_dssp ECC-BSSCEEEEEEEEE
T ss_pred ecc-CCCEEEEEEEEEc
Confidence 877 4579999988665
No 10
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=75.16 E-value=10 Score=33.07 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=32.1
Q ss_pred EEcCCCCCeEEEEccchhHHhhcCc-cccccccccCCCCCCeeEEEEeec
Q 017959 265 MEIPPVPGALVINVGDTLQILSNGR-YKSAEHRVRTTSSKSRVSIPIFTM 313 (363)
Q Consensus 265 ~~V~p~pgalvVniGD~le~lSnG~-~kS~~HRVv~~~~~~R~Sia~F~~ 313 (363)
+.|+|..|.+|+.-.- ..||. -..++|++..-....|+++..+++
T Consensus 166 ~~V~P~~G~al~f~~~----~~~g~~d~~~lH~~~PV~~G~K~v~~~W~~ 211 (216)
T 3itq_A 166 LSVHPRKGMAVYFEYF----YQDQSLNELTLHGGAPVTKGEKWIATQWVR 211 (216)
T ss_dssp EEECCCTTCEEEEECC----CSSHHHHHTTCEEECCEEESCEEEEEEEEE
T ss_pred CEEecCCCeEEEEecc----CCCCCCCCccccccceeccccEEEEEeeEe
Confidence 7899999998886531 11222 246799998755568999988875
No 11
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=74.45 E-value=8 Score=33.60 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=34.4
Q ss_pred EEEcCCCCCeEEEEccchhHHhhcCcc-ccccccccCCCCCCeeEEEEeecC
Q 017959 264 WMEIPPVPGALVINVGDTLQILSNGRY-KSAEHRVRTTSSKSRVSIPIFTMP 314 (363)
Q Consensus 264 W~~V~p~pgalvVniGD~le~lSnG~~-kS~~HRVv~~~~~~R~Sia~F~~P 314 (363)
-+.|+|..|.+|+.-- ...||.. ..++|+|..-....|+++..+++-
T Consensus 170 ~~~V~P~~G~al~f~~----~~~~g~~d~~~lH~~~PV~~G~K~~~~~Wi~~ 217 (224)
T 2jig_A 170 GLAVKPIKGDALMFYS----LKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 217 (224)
T ss_dssp SEEECCCTTCEEEEES----BCTTSCBCGGGCEEECCEEESEEEEEEEEEES
T ss_pred ceEEecccCcEEEEEe----eCCCCCCCCCCcccCCccccceEEEEEEeEEc
Confidence 4899999999888753 1223433 678999987555689999988764
No 12
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=74.42 E-value=17 Score=31.45 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=47.9
Q ss_pred cccCCCCCCCCCcCCccccccC-----C--ceEEEeeCCcCceEEEeCCCCCCCCCCCcEEEcCCCCCeEEEEccchhHH
Q 017959 212 MNFYPTCPNPELTVGVGRHSDM-----G--ALTILLQDGIGGLYVKVEEDIPDVGKKGEWMEIPPVPGALVINVGDTLQI 284 (363)
Q Consensus 212 ~~~YPp~~~~~~~~g~~~HtD~-----~--~lTlL~qd~v~GLqV~~~~~~~~~~~~g~W~~V~p~pgalvVniGD~le~ 284 (363)
+|+|.+ .. ++++|.|- + .+||-+-.. .=+.+.... .++.++.+.-.+|+++|.-|++- .
T Consensus 109 vN~Y~~-----G~-~i~~H~D~~e~~~~~pI~svSLG~~-~~f~f~~~~------~~~~~~~i~L~~GsllvM~G~~r-~ 174 (211)
T 3i3q_A 109 INRYAP-----GA-KLSLHQDKDEPDLRAPIVSVSLGLP-AIFQFGGLK------RNDPLKRLLLEHGDVVVWGGESR-L 174 (211)
T ss_dssp EEEECT-----TC-CEEEECCCCCSCTTSCEEEEEEESC-EEEEECCSS------TTSCCEEEEECTTCEEEECGGGT-T
T ss_pred EEEEcC-----CC-CcccccCCCccccCCCEEEEECCCC-eEEEEeccc------CCCceEEEECCCCCEEEECchHH-c
Confidence 799965 23 78999993 1 233333221 224443321 11368889999999999988772 2
Q ss_pred hhcCccccccccccCCCC-------CCeeEEEEee
Q 017959 285 LSNGRYKSAEHRVRTTSS-------KSRVSIPIFT 312 (363)
Q Consensus 285 lSnG~~kS~~HRVv~~~~-------~~R~Sia~F~ 312 (363)
| .|.|..... ..|+|+.|=.
T Consensus 175 ~--------~H~I~~~~~~~~p~~~~~RIsLTFR~ 201 (211)
T 3i3q_A 175 F--------YHGIQPLKAGFHPLTIDCRYNLTFRQ 201 (211)
T ss_dssp C--------CEEECCCCCCCBTTTBTCEEEEEEEC
T ss_pred e--------EeccCcccCCcCCCCCCCEEEEEeee
Confidence 2 466654322 3699998853
No 13
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=72.39 E-value=7.3 Score=34.46 Aligned_cols=89 Identities=21% Similarity=0.150 Sum_probs=52.6
Q ss_pred cccCCCCCCCCCcCCccccccC--------CceEEEeeCCcCceEEEeCCCCCCC--CCCCcEEEcCCCCCeEEEEccch
Q 017959 212 MNFYPTCPNPELTVGVGRHSDM--------GALTILLQDGIGGLYVKVEEDIPDV--GKKGEWMEIPPVPGALVINVGDT 281 (363)
Q Consensus 212 ~~~YPp~~~~~~~~g~~~HtD~--------~~lTlL~qd~v~GLqV~~~~~~~~~--~~~g~W~~V~p~pgalvVniGD~ 281 (363)
+|+|++- .-++++|.|- ...||-+-.. .=+.+......... ...+..+.+.-.+|+++|.-|+.
T Consensus 130 vN~Y~~G-----~d~i~~H~D~~~~~~~~~~IaslSLG~~-~~f~f~~~~~~~~~~~~~~~~~~~i~L~~gsllvM~G~~ 203 (238)
T 2iuw_A 130 CNLYRNE-----KDSVDWHSDDEPSLGRCPIIASLSFGAT-RTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGAT 203 (238)
T ss_dssp EEEECST-----TCCEEEECCCCGGGCSSCCEEEEEEESC-EEEEEEECCC--------CCCEEEEEECTTCEEEEEETH
T ss_pred EEEECCC-----CCceeCCcCChhhcCCCCcEEEEECCCC-EEEEEeccCCccccCcccCCceEEEEcCCCCEEEEChhh
Confidence 7999763 2367889884 2334433221 12444443210000 01136899999999999999998
Q ss_pred hHHhhcCccccccccccCCCCCCeeEEEEee
Q 017959 282 LQILSNGRYKSAEHRVRTTSSKSRVSIPIFT 312 (363)
Q Consensus 282 le~lSnG~~kS~~HRVv~~~~~~R~Sia~F~ 312 (363)
=..|..|.-+.. .....|+|+.|=.
T Consensus 204 r~~w~H~I~~~~------~~~~~RIsLTfR~ 228 (238)
T 2iuw_A 204 QADWQHRVPKEY------HSREPRVNLTFRT 228 (238)
T ss_dssp HHHEEEEECCCS------SCCCCEEEEEEEC
T ss_pred hCccEecCCCcC------CCCCCEEEEEeee
Confidence 777765554321 1356899999854
No 14
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=66.92 E-value=7.2 Score=36.64 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=62.5
Q ss_pred cccCCCCCCCCCcCCccccccCC------ceEEEeeCCcCceEEEeCCCCCCCCCCCcEEEcCCCCCeEEEEccchhHHh
Q 017959 212 MNFYPTCPNPELTVGVGRHSDMG------ALTILLQDGIGGLYVKVEEDIPDVGKKGEWMEIPPVPGALVINVGDTLQIL 285 (363)
Q Consensus 212 ~~~YPp~~~~~~~~g~~~HtD~~------~lTlL~qd~v~GLqV~~~~~~~~~~~~g~W~~V~p~pgalvVniGD~le~l 285 (363)
+|+|.+- -++++|.|-. ..||-+- ...=+.+...+ +.++.+.-.+|+++|.-|+.=..|
T Consensus 202 vN~Y~~G------~~I~~H~D~~~~~~~~I~slSLG-~~~~f~f~~~~--------~~~~~l~L~~gsLlvM~G~~r~~w 266 (345)
T 3tht_A 202 INQYEPG------QGIPAHIDTHSAFEDEIVSLSLG-SEIVMDFKHPD--------GIAVPVMLPRRSLLVMTGESRYLW 266 (345)
T ss_dssp EEEECTT------CCEEEECCCTTTBCSCEEEEEES-SCEEEEEECTT--------SCEEEEEECTTEEEEECTHHHHTS
T ss_pred EEEecCC------CCEeeccCCchhcCCeEEEEECC-CceeEEEccCC--------CceEEEEcCCCcEEEEChHHhhce
Confidence 7999662 2789999973 3333332 12234555444 479999999999999999998888
Q ss_pred hcCccccccccccC------------------CCCCCeeEEEEeecCCCCCeEecCCcccccC
Q 017959 286 SNGRYKSAEHRVRT------------------TSSKSRVSIPIFTMPKPTVKIGPLPQLVEKE 330 (363)
Q Consensus 286 SnG~~kS~~HRVv~------------------~~~~~R~Sia~F~~P~~d~~i~Pl~~~v~~~ 330 (363)
..|.-+-...-+-. .....|+|+.+=.-+...+. ...|++++..
T Consensus 267 ~H~I~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~r~~RiSlT~R~v~~~~c~-C~~~~~cd~~ 328 (345)
T 3tht_A 267 THGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQTPCN-CSYPLVCDSQ 328 (345)
T ss_dssp EEEECCCSEEEEESGGGSSCEECCSSSSCEEEEECCCEEEEEEECBCSSCCC-CSCTTTCTTT
T ss_pred EccCCcccCCccCcccccccccccccCCCceeccCCCEEEEEEEecCCCCcC-CCCCCcccCC
Confidence 76654433322210 01346999998765543222 2334455543
No 15
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=65.25 E-value=15 Score=31.50 Aligned_cols=88 Identities=11% Similarity=0.100 Sum_probs=50.7
Q ss_pred cccCCCCCCCCCcCCccccccCC--------ceEEEeeCCcCceEEEeCCCCC-CCCCCCcEEEcCCCCCeEEEEccchh
Q 017959 212 MNFYPTCPNPELTVGVGRHSDMG--------ALTILLQDGIGGLYVKVEEDIP-DVGKKGEWMEIPPVPGALVINVGDTL 282 (363)
Q Consensus 212 ~~~YPp~~~~~~~~g~~~HtD~~--------~lTlL~qd~v~GLqV~~~~~~~-~~~~~g~W~~V~p~pgalvVniGD~l 282 (363)
+|+|.+-. -+++.|.|-- ..+|-+-. ..=+.+....+.. .....+..+.+.-.+|+++|.-|++=
T Consensus 104 vN~Y~~G~-----d~i~~H~D~~~~~~~~~~IasvSLG~-~~~f~~~~~~~~~~~~~~~~~~~~~~L~~GsllvM~g~~q 177 (204)
T 3s57_A 104 INRYKDGS-----DHICEHRDDERELAPGSPIASVSFGA-SRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLLMMNHPTN 177 (204)
T ss_dssp EEEESSTT-----CCEEEECCCCTTBCTTCCEEEEEEES-CEEEEEEEGGGCSSSCSCCCCCEEEEECTTEEEEEETTHH
T ss_pred EEEECCCC-----CcccceecChhhccCCCcEEEEECCC-ceEEEEEEcCCCccccccCCceEEEECCCCCEEEECchhh
Confidence 79997632 2678888862 22333322 1224454432110 01122357888899999999999887
Q ss_pred HHhhcCccccccccccCCCCCCeeEEEEe
Q 017959 283 QILSNGRYKSAEHRVRTTSSKSRVSIPIF 311 (363)
Q Consensus 283 e~lSnG~~kS~~HRVv~~~~~~R~Sia~F 311 (363)
..|..|.-+.. .....|+|+.|=
T Consensus 178 ~~w~H~Ip~~~------~~~~~RislTFR 200 (204)
T 3s57_A 178 THWYHSLPVRK------KVLAPRVNLTFR 200 (204)
T ss_dssp HHEEEEECCCT------TCCSCEEEEEEE
T ss_pred heeEeeccccC------CCCCCEEEEEee
Confidence 76754432211 123689999873
No 16
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas structural genomics, PSI-2, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron}
Probab=52.83 E-value=6.5 Score=34.01 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=30.7
Q ss_pred CceeeeCCCCChHHHHHHHHHHHHHcCeEEEEcCCC
Q 017959 57 PIDLSKLDGPNHEEVARQIARASETLGFFQVVNHGV 92 (363)
Q Consensus 57 ~iPvIDls~~~~~~~~~~l~~A~~~~GFF~l~nhGi 92 (363)
.||++++......++++.+.+++.+.-.+.+.|||+
T Consensus 125 ~v~~~~y~~~g~~~la~~i~~~l~~~~avll~nHG~ 160 (212)
T 2opi_A 125 EIPVIPYYRPGSPELAKAVVEAMLKHNSVLLTNHGQ 160 (212)
T ss_dssp CCCEECCCCTTCHHHHHHHHHHTSSCSEEEETTTEE
T ss_pred CeEEEcCCCCCcHHHHHHHHHHhccCCEEEEcCCCc
Confidence 599999876556678899999998888888899996
No 17
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=51.50 E-value=31 Score=31.94 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHHHHHcCeEEEEcCCCC----HHHHHHHHHHHHHHhc
Q 017959 66 PNHEEVARQIARASETLGFFQVVNHGVP----VELLESLKDAAHAFFN 109 (363)
Q Consensus 66 ~~~~~~~~~l~~A~~~~GFF~l~nhGi~----~~~~~~~~~~~~~FF~ 109 (363)
...+++.+++.+.++.-||..=.+|||+ .+-++.+.+++++|++
T Consensus 301 g~~e~i~~~v~~~l~~~g~I~~~Ghgi~p~tp~env~a~v~av~ey~A 348 (348)
T 4ay7_A 301 GPVDKIKAEAKEALEGGIDVLAPGCGIAPMTPLENVKALVAARDEFYA 348 (348)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEESSSCCTTCCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhCCCCEEeCCCccCCCCCHHHHHHHHHHHHHhcC
Confidence 3456777888888888888777789975 5789999999999985
No 18
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A
Probab=50.74 E-value=11 Score=32.41 Aligned_cols=36 Identities=19% Similarity=0.140 Sum_probs=30.6
Q ss_pred Cceee-eCCCCChHHHHHHHHHHHHHcCeEEEEcCCC
Q 017959 57 PIDLS-KLDGPNHEEVARQIARASETLGFFQVVNHGV 92 (363)
Q Consensus 57 ~iPvI-Dls~~~~~~~~~~l~~A~~~~GFF~l~nhGi 92 (363)
.||++ ++......++++.+.+++++.-.+.+.|||+
T Consensus 117 ~ip~~~~y~~~g~~ela~~i~~~l~~~~avll~nHG~ 153 (200)
T 2fk5_A 117 EVPVLAPKTVSATEEAALSVAEALREHRACLLRGHGA 153 (200)
T ss_dssp CEEEECCSCCSSSHHHHHHHHHHHHHCSEEEETTTEE
T ss_pred CceEecCCCCCCcHHHHHHHHHHhCcCCEEEECCCCc
Confidence 69999 7776566788899999999888899999995
No 19
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1
Probab=46.11 E-value=12 Score=33.02 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=30.7
Q ss_pred CceeeeCCCCChHHHHHHHHHHHHHcCeEEEEcCCC
Q 017959 57 PIDLSKLDGPNHEEVARQIARASETLGFFQVVNHGV 92 (363)
Q Consensus 57 ~iPvIDls~~~~~~~~~~l~~A~~~~GFF~l~nhGi 92 (363)
.||++++......++++.+.+++++.-.+.+.|||+
T Consensus 161 ~v~~~~y~~~g~~ela~~i~~~l~~~~avll~nHG~ 196 (238)
T 1pvt_A 161 GISVVEFEKPGSVELGLKTVEKSEGKDAVLWDKHGV 196 (238)
T ss_dssp CCEEECCCSTTCHHHHHHHHHHTSSCSEEEETTSCE
T ss_pred CceEecCCCCCcHHHHHHHHHHhccCCEEEEcCCCc
Confidence 599999976566788889999998888888899996
No 20
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial L-fucose metabolism; 1.66A {Escherichia coli} SCOP: c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P 1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P 1dzw_P 1e49_P 1e4a_P
Probab=45.56 E-value=9.9 Score=32.90 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=30.3
Q ss_pred CceeeeCCCCChHHHHHHHHHHHHHcCeEEEEcCCC
Q 017959 57 PIDLSKLDGPNHEEVARQIARASETLGFFQVVNHGV 92 (363)
Q Consensus 57 ~iPvIDls~~~~~~~~~~l~~A~~~~GFF~l~nhGi 92 (363)
.||++++......++++.+.+++.+.-.+.+.|||+
T Consensus 122 ~ip~~~y~~~g~~~la~~i~~~l~~~~avll~nHG~ 157 (215)
T 1e4c_P 122 SIPCAPYATFGTRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_dssp CBCEECCCCTTCHHHHHHHHHHTSSCSEEEETTTEE
T ss_pred CcceeeCCCCCcHHHHHHHHHHhccCCEEEEcCCCc
Confidence 589999876556688889999998888888899996
No 21
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding, oligomerization, zinc, lyase, class II, cytoplasm; HET: PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A 2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A 2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A
Probab=42.56 E-value=13 Score=33.58 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=31.0
Q ss_pred CceeeeCCCCChHHHHHHHHHHHHHcCeEEEEcCCC
Q 017959 57 PIDLSKLDGPNHEEVARQIARASETLGFFQVVNHGV 92 (363)
Q Consensus 57 ~iPvIDls~~~~~~~~~~l~~A~~~~GFF~l~nhGi 92 (363)
.||++++......++++.+.+++++.-.+.+.|||+
T Consensus 179 ~v~v~~y~~~g~~ela~~i~~~l~~~~avll~nHG~ 214 (274)
T 2v9l_A 179 GVGILPWMVPGTDAIGQATAQEMQKHSLVLWPFHGV 214 (274)
T ss_dssp CEEECCCCCSSSHHHHHHHHHHHTTCSEEEETTTEE
T ss_pred ceeEecCCCCCCHHHHHHHHHHHccCCEEEEcCCCc
Confidence 599999876566788899999999988899999996
No 22
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic mechanism; 2.40A {Aquifex aeolicus}
Probab=41.15 E-value=16 Score=31.26 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=28.6
Q ss_pred CceeeeCCCCChHHHHHHHHHHHHHcC---eEEEEcCCC
Q 017959 57 PIDLSKLDGPNHEEVARQIARASETLG---FFQVVNHGV 92 (363)
Q Consensus 57 ~iPvIDls~~~~~~~~~~l~~A~~~~G---FF~l~nhGi 92 (363)
.||+++.. .+.+++++.+.+++.+.+ .+.+.|||+
T Consensus 139 ~vp~~~~~-~g~~~La~~i~~~l~~~~~~~avll~nHG~ 176 (208)
T 2irp_A 139 KIPIFPNE-QNIPLLAKEVENYFKTSEDKYGFLIRGHGL 176 (208)
T ss_dssp EEEEECCC-SCHHHHHHHHHHHHHHCSCCSCEEETTTEE
T ss_pred ceeeecCC-CCHHHHHHHHHHHHhcCCCceEEEEcCCCC
Confidence 58888875 456788899999998875 788889996
No 23
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=40.43 E-value=27 Score=20.34 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHcCeEE
Q 017959 69 EEVARQIARASETLGFFQ 86 (363)
Q Consensus 69 ~~~~~~l~~A~~~~GFF~ 86 (363)
.++++.|.-.|.+-|||+
T Consensus 9 s~LVdaL~~vCgdRGF~~ 26 (30)
T 1m5a_B 9 SHLVEALYLVCGERGFFY 26 (30)
T ss_dssp HHHHHHHHHHHGGGCEEE
T ss_pred HHHHHHHHHHhccCcccc
Confidence 578889999999999998
No 24
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=39.66 E-value=8.3 Score=37.47 Aligned_cols=53 Identities=9% Similarity=0.101 Sum_probs=39.7
Q ss_pred CceeeeCCCCChHHHHHHHHHHHHHcCeEEEEcCCCCHHHHHHHHHHHHHHhcC
Q 017959 57 PIDLSKLDGPNHEEVARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFFNQ 110 (363)
Q Consensus 57 ~iPvIDls~~~~~~~~~~l~~A~~~~GFF~l~nhGi~~~~~~~~~~~~~~FF~l 110 (363)
-||.||++......+.++..+..++.|++.|.|. ||.+...+..+.+.+|.+.
T Consensus 100 ~iP~i~f~di~~~~~s~~~~~~ir~rG~vVIRgv-vp~e~A~~~~~~~~~yl~~ 152 (461)
T 2dbn_A 100 VWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGH-FPREQALGWDQSMLDYLDR 152 (461)
T ss_dssp SSCEEEHHHHHHTCCCHHHHHHHHHHSEEEEETS-SCHHHHHHHHHHHHHHHHH
T ss_pred CcceecHHHhcCCCCCHHHHHHHHhccEEEECCC-CCHHHHHHHHHHHHHHHHh
Confidence 6999999751111123556688899999988877 8999888888888888643
No 25
>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}
Probab=36.22 E-value=29 Score=29.73 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=30.3
Q ss_pred EEEccchhHHhhcCcc----ccccccccCCCCCCeeEEEE-eecCCC
Q 017959 275 VINVGDTLQILSNGRY----KSAEHRVRTTSSKSRVSIPI-FTMPKP 316 (363)
Q Consensus 275 vVniGD~le~lSnG~~----kS~~HRVv~~~~~~R~Sia~-F~~P~~ 316 (363)
.+.||+.-..|..|+. -|-.|.|.+.++..|+-+.+ |.+|+.
T Consensus 140 ~i~V~~~~~~w~eGe~~~fDds~~Hev~N~~d~~RvvL~~D~~rPdl 186 (197)
T 3rcq_A 140 KIRCANETKTWEEGKVLIFDDSFEHEVWQDASSFRLIFIVDVWHPEL 186 (197)
T ss_dssp EEEETTEEECCCBTCEEEECTTSCEEEEECSSSCEEEEEEEEECTTS
T ss_pred EEEECCEEEEeeCCcEEEEcCCeEEEEEECCCCCEEEEEEeeeCCCC
Confidence 3456777777777764 36789999988889987655 566654
No 26
>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5 PDB: 1gqw_A* 1os7_A* 1gy9_A
Probab=32.34 E-value=52 Score=29.20 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=36.9
Q ss_pred CceeeeCCCCChHHHHHHHHHHHHHcCeEEEEcCCCCHHHHHHHHHHHHHHhc
Q 017959 57 PIDLSKLDGPNHEEVARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFFN 109 (363)
Q Consensus 57 ~iPvIDls~~~~~~~~~~l~~A~~~~GFF~l~nhGi~~~~~~~~~~~~~~FF~ 109 (363)
+|+-|||+..-..+..++|.+++.++|+..+.+-.++.+. ..+.++.|=.
T Consensus 17 ei~gvdl~~~l~~~~~~~l~~~l~~~Gvv~frg~~~~~~~---~~~~~~~~G~ 66 (283)
T 1otj_A 17 QISGADLTRPLSDNQFEQLYHAVLRHQVVFLRDQAITPQQ---QRALAQRFGE 66 (283)
T ss_dssp EEESCCSSSCCCHHHHHHHHHHHHHHSEEEECSCCCCHHH---HHHHHHTTSC
T ss_pred EEECCCcCccCCHHHHHHHHHHHHHCCEEEECCCCCCHHH---HHHHHHHhCC
Confidence 5777888873345678999999999999999988877643 4445555543
No 27
>3ocr_A Class II aldolase/adducin domain protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, lyase; 1.95A {Pseudomonas syringae PV}
Probab=30.57 E-value=27 Score=31.43 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=30.1
Q ss_pred CceeeeCCCCC-hHHHHHHHHHHHHHcCeEEEEcCCC
Q 017959 57 PIDLSKLDGPN-HEEVARQIARASETLGFFQVVNHGV 92 (363)
Q Consensus 57 ~iPvIDls~~~-~~~~~~~l~~A~~~~GFF~l~nhGi 92 (363)
.||++|+.... ..++.+.|.+++.+.-.+.+.|||+
T Consensus 156 ~v~~~~y~~~~~~~el~~~i~~~l~~~~avlL~nHG~ 192 (273)
T 3ocr_A 156 RVAYHGYEGIALDLSERERLVADLGDKSVMILRNHGL 192 (273)
T ss_dssp TEEEECCCCSSCCHHHHHHHHHHHTTCSEEEETTTEE
T ss_pred CEEEECCCCCCCCHHHHHHHHHHhCcCCEEEEcCCce
Confidence 58999887633 5678889999999999999999996
No 28
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=30.15 E-value=22 Score=33.62 Aligned_cols=51 Identities=6% Similarity=0.021 Sum_probs=38.8
Q ss_pred CceeeeCCC-CChHHHHHHHHHHHHHcCeEEEEcCCCCHHHHHHHHHHHHHHhcC
Q 017959 57 PIDLSKLDG-PNHEEVARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFFNQ 110 (363)
Q Consensus 57 ~iPvIDls~-~~~~~~~~~l~~A~~~~GFF~l~nhGi~~~~~~~~~~~~~~FF~l 110 (363)
++|.||++. ...++.+.++.+|+.++|+..+.|-.++.+ ...+.++.|-.+
T Consensus 122 ~~~~~~~~~~l~~d~~~~~~~~~l~~~Gvv~frg~~~~~~---~~~~~a~~~G~l 173 (388)
T 3o2g_A 122 QLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPG---EVSKLGKRMGFL 173 (388)
T ss_dssp CCCEEEHHHHHHCHHHHHHHHHHHHHHSEEEEECCCSSTT---HHHHHHHHHSCC
T ss_pred CCCccCHHHHhcCHHHHHHHHHHHHhcCEEEEeCCCCCHH---HHHHHHHHhCCC
Confidence 689999876 223577899999999999999999888743 445566666554
No 29
>1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate dependent dioxygenase, jelly roll, oxidoreductase; 1.89A {Pseudomonas putida} SCOP: b.82.2.5 PDB: 1oii_A* 1oij_B* 1vz4_A 1vz5_A 1oik_A* 1oij_A* 1oij_C*
Probab=28.75 E-value=66 Score=28.85 Aligned_cols=51 Identities=14% Similarity=-0.029 Sum_probs=38.1
Q ss_pred CceeeeCCCCChHHHHHHHHHHHHHcCeEEEEcCC-CCHHHHHHHHHHHHHHhcC
Q 017959 57 PIDLSKLDGPNHEEVARQIARASETLGFFQVVNHG-VPVELLESLKDAAHAFFNQ 110 (363)
Q Consensus 57 ~iPvIDls~~~~~~~~~~l~~A~~~~GFF~l~nhG-i~~~~~~~~~~~~~~FF~l 110 (363)
+|+-|||+..-..+..++|.+++.++|+..+.|-. ++. ++..+.++.|-.+
T Consensus 27 ei~gvdl~~~l~~~~~~~l~~~l~~~Gvv~fRg~~~l~~---~~~~~~~~~fG~l 78 (301)
T 1oih_A 27 EIRGVKLSPDLDAATVEAIQAALVRHKVIFFRGQTHLDD---QSQEGFAKLLGEP 78 (301)
T ss_dssp EEESCCCCTTCCHHHHHHHHHHHHHHSEEEECCCTTCCH---HHHHHHHHTTSCB
T ss_pred EEeCCCccccCCHHHHHHHHHHHHHCCEEEECCCCCCCH---HHHHHHHHHhCCC
Confidence 57778888733456789999999999999999887 875 4555566666443
No 30
>3r1j_A Alpha-ketoglutarate-dependent taurine dioxygenase; ssgcid, oxidoreductase, structural genomics; 2.05A {Mycobacterium avium} SCOP: b.82.2.0 PDB: 3swt_A
Probab=28.35 E-value=75 Score=28.81 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=39.0
Q ss_pred CceeeeCCCCChHHHHHHHHHHHHHcCeEEEEcC-CCCHHHHHHHHHHHHHHhcC
Q 017959 57 PIDLSKLDGPNHEEVARQIARASETLGFFQVVNH-GVPVELLESLKDAAHAFFNQ 110 (363)
Q Consensus 57 ~iPvIDls~~~~~~~~~~l~~A~~~~GFF~l~nh-Gi~~~~~~~~~~~~~~FF~l 110 (363)
+|+=|||+..-..+..++|.+|+.++|+..+.|- .++.+ +..+.++.|=.+
T Consensus 21 ei~gvdl~~~L~d~~~~~l~~al~~~gvv~fR~q~~l~~~---~~~~fa~~fG~l 72 (301)
T 3r1j_A 21 RVDGVRLGGDLDDATVEQIRRALLTHKVIFFRHQHHLDDS---RQLEFARLLGTP 72 (301)
T ss_dssp EEESCCCSTTCCHHHHHHHHHHHHHHSEEEECCCTTCCHH---HHHHHHHHHSCB
T ss_pred eEeCCCccccCCHHHHHHHHHHHHHCCEEEECCCCCCCHH---HHHHHHHhcCCc
Confidence 5777899853356778999999999999999998 78764 445566666544
No 31
>2vf9_A Coat protein; virion, RNA-binding, capsid protein, structural protein, virus; 3.50A {Bacteriophage PRR1}
Probab=25.71 E-value=13 Score=27.75 Aligned_cols=18 Identities=50% Similarity=0.562 Sum_probs=14.8
Q ss_pred hHHhhcCccccccccccC
Q 017959 282 LQILSNGRYKSAEHRVRT 299 (363)
Q Consensus 282 le~lSnG~~kS~~HRVv~ 299 (363)
|..-|||+|||++.-|+.
T Consensus 49 lrktsngrykstlklvvp 66 (131)
T 2vf9_A 49 LRKTSNGRYKSTLKLVVP 66 (131)
T ss_dssp EEECTTSEEEEEEEEEEE
T ss_pred EEecCCCceeeeEEEEEE
Confidence 456789999999988764
No 32
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=23.92 E-value=56 Score=21.19 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcc
Q 017959 176 TSMKMVRKLLEVLFKNLGVTLDEPE 200 (363)
Q Consensus 176 ~~~~l~~~ll~~l~~~Lgl~~~~~~ 200 (363)
+-.+|+..|.+++++.||.+++++.
T Consensus 18 ~k~~l~~~l~~~l~~~lg~p~~~v~ 42 (63)
T 2x4k_A 18 QLKNLVSEVTDAVEKTTGANRQAIH 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEE
Confidence 3567888899999999999987654
No 33
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A
Probab=23.84 E-value=90 Score=31.52 Aligned_cols=111 Identities=17% Similarity=0.114 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCCCCCccccccccceeeecccCCCCCCCCCcCCccccccC-C--ceEEEee----C-----CcCc-eEE
Q 017959 183 KLLEVLFKNLGVTLDEPELDAIIGFKMVNMNFYPTCPNPELTVGVGRHSDM-G--ALTILLQ----D-----GIGG-LYV 249 (363)
Q Consensus 183 ~ll~~l~~~Lgl~~~~~~~~~~~~~~l~~~~~YPp~~~~~~~~g~~~HtD~-~--~lTlL~q----d-----~v~G-LqV 249 (363)
.++..|++..|++. +. +....+. ++.|++. -.+..|.|. + .||+++. + ..|| |++
T Consensus 105 ~Fr~~Ls~iTGi~~--Ls---g~~~D~~-~a~Y~~G------~fL~~H~D~~~~RrvS~VLYLN~pd~~W~~e~GGeL~L 172 (633)
T 3kt7_A 105 QYRDFFGYVTKAGK--LS---GSKTDMS-INTYTKG------CHLLTHDDVIGSRRISFILYLPDPDRKWKSHYGGGLRL 172 (633)
T ss_dssp HHHHHHHHHHTCCC--CC---SSCCCEE-EEEECTT------CEEEEECCCCTTEEEEEEEECSCTTSCCCGGGBCCEEE
T ss_pred HHHHHHHHHhCCcc--cC---CCceeEE-EEEeCCC------CeeeecCCCCCCeEEEEEEEcCCCCCCCCccCCceEEE
Confidence 34566677777632 10 0011133 5667542 125678884 2 3566653 1 1344 777
Q ss_pred EeCCCCCCCCC-CCcEEEcCCCCCeEEEEccchhHHhhcCccccccccccCC-CCCCeeEEEEee-cCCC
Q 017959 250 KVEEDIPDVGK-KGEWMEIPPVPGALVINVGDTLQILSNGRYKSAEHRVRTT-SSKSRVSIPIFT-MPKP 316 (363)
Q Consensus 250 ~~~~~~~~~~~-~g~W~~V~p~pgalvVniGD~le~lSnG~~kS~~HRVv~~-~~~~R~Sia~F~-~P~~ 316 (363)
+..+.. +.+ ......|.|..|.+|+..-.- + ...|.|..- ..+.|+||+-.+ .|..
T Consensus 173 yd~d~~--~~P~~d~~~~I~P~fNrLV~F~vsp------~---~S~H~V~eV~~~~~RlSItGWF~~p~~ 231 (633)
T 3kt7_A 173 FPSILP--NVPHSDPSAKLVPQFNQIAFFKVLP------G---FSFHDXEEVKVDKHRLSIQGWYHIPQV 231 (633)
T ss_dssp CCEEET--TEECSSCSEEECCCTTEEEEEECCT------T---TCCEEECCBCSSCCEEEEEEEEECCCT
T ss_pred ecCCCc--CCCCCCceEEEecCCCeEEEEEcCC------C---CCcCCCCccCCCCCEEEEEEEeccCCC
Confidence 653300 000 124778999999999875310 1 245755221 277999998655 4544
No 34
>3m4r_A Uncharacterized protein; short chain dehydrogenase, class II aldolase, adducin head D carbohydrate metabolism, structural genomics; 2.00A {Thermoplasma acidophilum}
Probab=22.09 E-value=35 Score=29.60 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=27.1
Q ss_pred ceeeeCCCCChHHHHHHHHHHHHHc-CeEEEEcCCC
Q 017959 58 IDLSKLDGPNHEEVARQIARASETL-GFFQVVNHGV 92 (363)
Q Consensus 58 iPvIDls~~~~~~~~~~l~~A~~~~-GFF~l~nhGi 92 (363)
||++++....- ++++.+.+++.+. -.+.|.|||+
T Consensus 156 v~~~~y~~~g~-ela~~i~~~l~~~~~avlL~nHG~ 190 (222)
T 3m4r_A 156 VVVLPYIPPGF-TLAKEVMNCFKKGIDGIVLRKHGL 190 (222)
T ss_dssp EEEECCCCSSH-HHHHHHHHHCCTTCSEEEETTTEE
T ss_pred ceecCCcCCcH-HHHHHHHHHHhcCCCEEEECCCCC
Confidence 89999877554 7888899999864 6777889996
No 35
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=21.84 E-value=52 Score=21.65 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcc
Q 017959 177 SMKMVRKLLEVLFKNLGVTLDEPE 200 (363)
Q Consensus 177 ~~~l~~~ll~~l~~~Lgl~~~~~~ 200 (363)
-.+|+..|.+++++.||.+++++.
T Consensus 17 k~~l~~~lt~~l~~~lg~~~~~v~ 40 (64)
T 3abf_A 17 KRELVRRLTEMASRLLGEPYEEVR 40 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEE
Confidence 467888899999999999887654
No 36
>3pvj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, Fe(II) binding, oxidoreductas; 1.85A {Pseudomonas putida KT2440} SCOP: b.82.2.5 PDB: 3v15_A 3v17_A*
Probab=21.10 E-value=97 Score=27.56 Aligned_cols=50 Identities=14% Similarity=0.032 Sum_probs=37.9
Q ss_pred CceeeeCCCCChHHHHHHHHHHHHHcCeEEEEcCCCCHHHHHHHHHHHHHHhc
Q 017959 57 PIDLSKLDGPNHEEVARQIARASETLGFFQVVNHGVPVELLESLKDAAHAFFN 109 (363)
Q Consensus 57 ~iPvIDls~~~~~~~~~~l~~A~~~~GFF~l~nhGi~~~~~~~~~~~~~~FF~ 109 (363)
+|.=|||+..-..+..++|.+|+.++|+..+.|-.++.+ +..+.++.|=.
T Consensus 15 ei~gvdl~~~l~~~~~~~l~~~l~~~gvv~fR~q~l~~~---~~~~fa~~fG~ 64 (277)
T 3pvj_A 15 QISGVDISRDISAEERDAIEQALLQHQVLFLRDQPINPE---QQARFAARFGD 64 (277)
T ss_dssp EEESCCTTSCCCHHHHHHHHHHHHHHSEEEESSCCCCHH---HHHHHHGGGSC
T ss_pred EEeCCCccccCCHHHHHHHHHHHHHCCEEEECCCCCCHH---HHHHHHHHhCC
Confidence 577788886335677899999999999999999888764 44455666544
No 37
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=21.02 E-value=1.8e+02 Score=23.95 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHcC-eEEEEc-CCCCHHHHHHHHHHHH
Q 017959 68 HEEVARQIARASETLG-FFQVVN-HGVPVELLESLKDAAH 105 (363)
Q Consensus 68 ~~~~~~~l~~A~~~~G-FF~l~n-hGi~~~~~~~~~~~~~ 105 (363)
..+.+++|.+.+++.. .++|++ +|++...+.+++...+
T Consensus 6 K~~~v~el~~~l~~~~~~v~v~~~~gltv~~~~~LR~~lr 45 (173)
T 2j01_J 6 NVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALK 45 (173)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEcCCCCHHHHHHHHHHHH
Confidence 4567788888888888 666665 4888777777776555
No 38
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=20.38 E-value=1.7e+02 Score=24.16 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHcCeEEEEcC-CCCHHHHHHHHHHHHH
Q 017959 68 HEEVARQIARASETLGFFQVVNH-GVPVELLESLKDAAHA 106 (363)
Q Consensus 68 ~~~~~~~l~~A~~~~GFF~l~nh-Gi~~~~~~~~~~~~~~ 106 (363)
..+.+++|.+.+++...++|+++ |++...+.+++...++
T Consensus 8 K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~ 47 (180)
T 1zav_A 8 KELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLRE 47 (180)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 45677888888888888887764 8888777777776654
Done!