Query 017961
Match_columns 363
No_of_seqs 106 out of 133
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 04:56:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07851 TMPIT: TMPIT-like pro 100.0 1E-125 2E-130 920.7 32.8 313 9-355 16-330 (330)
2 KOG4758 Predicted membrane pro 100.0 3.5E-81 7.7E-86 567.8 13.9 211 127-351 1-213 (220)
3 KOG4758 Predicted membrane pro 99.6 4.5E-16 9.7E-21 143.0 8.9 184 11-205 2-195 (220)
4 PF07851 TMPIT: TMPIT-like pro 94.4 0.16 3.5E-06 51.2 8.1 121 11-143 1-122 (330)
5 COG3883 Uncharacterized protei 83.5 4.1 8.8E-05 40.3 7.3 89 7-120 38-127 (265)
6 PF09726 Macoilin: Transmembra 72.9 11 0.00023 41.8 7.3 61 4-65 503-564 (697)
7 KOG3312 Predicted membrane pro 71.8 14 0.0003 34.4 6.6 22 176-197 142-163 (186)
8 PF01151 ELO: GNS1/SUR4 family 71.0 83 0.0018 30.0 12.1 79 197-306 115-193 (250)
9 PF03962 Mnd1: Mnd1 family; I 68.7 44 0.00095 31.1 9.4 81 4-92 66-148 (188)
10 PF10158 LOH1CR12: Tumour supp 66.8 52 0.0011 29.3 9.1 44 9-60 58-101 (131)
11 PRK11637 AmiB activator; Provi 66.8 23 0.0005 36.1 7.8 8 218-225 306-313 (428)
12 COG1422 Predicted membrane pro 64.6 97 0.0021 29.8 10.9 40 177-221 137-176 (201)
13 KOG4603 TBP-1 interacting prot 60.7 17 0.00037 34.5 5.0 17 124-140 148-164 (201)
14 PF05565 Sipho_Gp157: Siphovir 56.1 59 0.0013 29.3 7.6 52 8-59 30-81 (162)
15 KOG4418 Predicted membrane pro 55.7 5.6 0.00012 41.5 1.2 25 202-226 15-39 (438)
16 PF12329 TMF_DNA_bd: TATA elem 55.4 66 0.0014 25.7 7.0 46 11-60 9-54 (74)
17 PRK11637 AmiB activator; Provi 53.9 76 0.0016 32.4 8.9 9 112-120 141-149 (428)
18 PF04899 MbeD_MobD: MbeD/MobD 53.7 95 0.0021 25.0 7.6 58 5-62 8-65 (70)
19 PF04508 Pox_A_type_inc: Viral 51.1 22 0.00047 23.3 2.9 21 40-60 2-22 (23)
20 PRK04406 hypothetical protein; 50.9 1.3E+02 0.0029 24.3 8.2 32 28-59 28-59 (75)
21 PF00435 Spectrin: Spectrin re 50.6 1E+02 0.0023 23.2 7.3 46 10-55 44-89 (105)
22 PF10186 Atg14: UV radiation r 50.0 1.2E+02 0.0026 28.4 8.9 32 32-63 77-108 (302)
23 PF10498 IFT57: Intra-flagella 49.4 76 0.0017 32.5 8.1 13 84-96 313-325 (359)
24 PF08317 Spc7: Spc7 kinetochor 48.4 1E+02 0.0022 30.6 8.6 55 10-64 180-234 (325)
25 KOG4054 Uncharacterized conser 47.3 1.8E+02 0.0038 27.7 9.3 64 244-312 105-173 (183)
26 PF07106 TBPIP: Tat binding pr 47.2 1.5E+02 0.0033 26.4 8.8 51 12-64 77-134 (169)
27 PF10168 Nup88: Nuclear pore c 46.7 66 0.0014 35.8 7.6 13 43-55 611-623 (717)
28 PF02403 Seryl_tRNA_N: Seryl-t 45.3 80 0.0017 26.0 6.3 36 22-57 47-85 (108)
29 PF07439 DUF1515: Protein of u 44.4 2E+02 0.0044 25.4 8.7 53 12-64 13-65 (112)
30 PF14147 Spore_YhaL: Sporulati 44.1 16 0.00035 28.2 1.8 20 202-221 2-21 (52)
31 PF03904 DUF334: Domain of unk 43.9 3.3E+02 0.0071 26.8 15.1 40 19-58 44-83 (230)
32 PTZ00251 fatty acid elongase; 42.8 3.4E+02 0.0074 26.7 11.7 78 199-308 138-215 (272)
33 PF10234 Cluap1: Clusterin-ass 40.7 1.6E+02 0.0036 29.2 8.6 52 8-59 163-214 (267)
34 PF13864 Enkurin: Calmodulin-b 40.7 50 0.0011 27.3 4.4 16 42-57 47-62 (98)
35 PF07889 DUF1664: Protein of u 40.5 2.1E+02 0.0045 25.5 8.4 15 45-59 67-81 (126)
36 PLN03217 transcription factor 40.4 36 0.00078 28.9 3.4 35 19-54 44-78 (93)
37 PLN02915 cellulose synthase A 39.9 63 0.0014 37.7 6.3 27 182-210 864-890 (1044)
38 PRK05431 seryl-tRNA synthetase 39.4 1.2E+02 0.0026 31.4 7.8 64 18-96 42-108 (425)
39 PRK08476 F0F1 ATP synthase sub 37.7 2.8E+02 0.0061 24.3 9.2 40 9-48 43-82 (141)
40 PF03915 AIP3: Actin interacti 37.7 1.4E+02 0.003 31.5 8.0 90 6-96 205-316 (424)
41 PF00038 Filament: Intermediat 37.0 2.1E+02 0.0046 27.5 8.6 51 10-60 187-237 (312)
42 KOG0288 WD40 repeat protein Ti 36.2 1.8E+02 0.0039 31.1 8.4 56 10-65 12-67 (459)
43 PF10018 Med4: Vitamin-D-recep 36.2 1.6E+02 0.0034 27.1 7.3 48 11-59 9-56 (188)
44 PF10186 Atg14: UV radiation r 35.8 2.5E+02 0.0053 26.3 8.7 12 242-253 262-273 (302)
45 PF07106 TBPIP: Tat binding pr 35.1 2.7E+02 0.0058 24.9 8.4 16 44-59 121-136 (169)
46 PF09730 BicD: Microtubule-ass 35.0 2.7E+02 0.0058 31.5 10.0 78 7-96 359-436 (717)
47 PLN02189 cellulose synthase 34.6 75 0.0016 37.1 5.8 29 180-210 860-888 (1040)
48 PF15450 DUF4631: Domain of un 34.6 1.8E+02 0.0039 31.7 8.2 63 4-66 384-446 (531)
49 PF14257 DUF4349: Domain of un 34.4 2.3E+02 0.0049 27.0 8.3 22 43-64 136-157 (262)
50 PF05478 Prominin: Prominin; 34.0 2.6E+02 0.0056 31.4 9.8 167 10-252 319-485 (806)
51 PF11241 DUF3043: Protein of u 33.6 3.4E+02 0.0073 25.5 9.0 24 171-194 99-122 (170)
52 PRK09039 hypothetical protein; 33.4 2.6E+02 0.0056 28.3 8.9 43 17-59 122-164 (343)
53 PRK00488 pheS phenylalanyl-tRN 33.4 1.7E+02 0.0038 30.0 7.7 52 83-145 67-118 (339)
54 PF09726 Macoilin: Transmembra 33.1 86 0.0019 34.9 5.9 31 27-57 455-485 (697)
55 TIGR00414 serS seryl-tRNA synt 32.9 1.8E+02 0.0039 30.1 7.9 65 17-96 43-111 (418)
56 PRK07739 flgK flagellar hook-a 32.7 4.5E+02 0.0097 27.9 10.9 51 9-59 148-198 (507)
57 PF00804 Syntaxin: Syntaxin; 32.7 1.4E+02 0.003 23.3 5.6 39 14-56 17-55 (103)
58 PF01923 Cob_adeno_trans: Coba 32.4 3E+02 0.0065 24.7 8.3 73 15-95 27-99 (163)
59 PF10393 Matrilin_ccoil: Trime 31.9 1E+02 0.0023 23.2 4.4 35 20-54 11-45 (47)
60 PF05377 FlaC_arch: Flagella a 31.9 1.4E+02 0.003 23.3 5.2 29 31-59 13-41 (55)
61 PRK10884 SH3 domain-containing 31.4 3.5E+02 0.0076 25.7 8.9 15 42-56 121-135 (206)
62 KOG1341 Na+/K+ transporter [In 30.8 1.4E+02 0.003 33.7 6.8 44 175-220 479-523 (854)
63 PF00880 Nebulin: Nebulin repe 30.5 17 0.00037 23.6 0.0 13 129-141 16-28 (29)
64 PRK13454 F0F1 ATP synthase sub 30.4 4.3E+02 0.0092 24.2 9.5 47 4-50 62-108 (181)
65 PLN02372 violaxanthin de-epoxi 30.3 2.6E+02 0.0056 29.9 8.4 46 8-58 373-422 (455)
66 PRK10884 SH3 domain-containing 30.2 2.9E+02 0.0062 26.3 8.1 8 51-58 137-144 (206)
67 KOG4603 TBP-1 interacting prot 30.2 4.6E+02 0.01 25.1 9.3 56 9-64 81-148 (201)
68 PF08919 F_actin_bind: F-actin 29.4 3.8E+02 0.0083 23.3 8.1 73 13-95 31-108 (110)
69 PLN02678 seryl-tRNA synthetase 28.8 2.2E+02 0.0048 30.1 7.8 41 19-59 48-91 (448)
70 PF02076 STE3: Pheromone A rec 28.7 2E+02 0.0044 28.3 7.1 57 145-201 108-193 (283)
71 smart00787 Spc7 Spc7 kinetocho 28.6 3.4E+02 0.0075 27.3 8.8 12 84-95 251-262 (312)
72 PRK00846 hypothetical protein; 28.6 3.3E+02 0.0073 22.4 8.1 32 29-60 31-62 (77)
73 PF11932 DUF3450: Protein of u 28.5 3.4E+02 0.0073 25.8 8.4 10 179-188 192-201 (251)
74 PF11945 WASH_WAHD: WAHD domai 27.9 2E+02 0.0044 28.9 7.0 47 13-59 17-63 (297)
75 KOG0250 DNA repair protein RAD 27.4 3.7E+02 0.0081 31.8 9.7 26 69-96 467-492 (1074)
76 PF04849 HAP1_N: HAP1 N-termin 27.3 2.7E+02 0.0059 28.4 7.8 24 12-35 218-241 (306)
77 PF12534 DUF3733: Leucine-rich 27.3 50 0.0011 26.4 2.2 21 200-220 20-41 (65)
78 cd07599 BAR_Rvs167p The Bin/Am 27.1 3E+02 0.0065 25.4 7.6 22 84-105 154-177 (216)
79 KOG1237 H+/oligopeptide sympor 26.8 1.7E+02 0.0037 31.6 6.7 58 286-343 457-514 (571)
80 PLN02320 seryl-tRNA synthetase 26.8 2.5E+02 0.0053 30.4 7.8 40 20-59 109-150 (502)
81 PF07412 Geminin: Geminin; In 26.7 2.3E+02 0.0049 27.3 6.7 57 2-59 113-169 (200)
82 smart00806 AIP3 Actin interact 26.3 2.3E+02 0.0051 30.1 7.3 90 6-96 209-320 (426)
83 PF05781 MRVI1: MRVI1 protein; 26.2 1.6E+02 0.0035 32.1 6.3 55 4-59 221-275 (538)
84 PF15048 OSTbeta: Organic solu 26.0 83 0.0018 28.2 3.5 39 313-351 28-66 (125)
85 smart00502 BBC B-Box C-termina 26.0 3.4E+02 0.0074 21.7 7.3 79 1-104 33-111 (127)
86 smart00150 SPEC Spectrin repea 26.0 2.9E+02 0.0062 20.7 6.6 7 20-26 37-43 (101)
87 PHA02562 46 endonuclease subun 26.0 3.7E+02 0.0079 27.9 8.7 14 45-58 336-349 (562)
88 PF11932 DUF3450: Protein of u 25.9 4E+02 0.0086 25.3 8.4 16 185-200 167-182 (251)
89 KOG3091 Nuclear pore complex, 25.3 2.6E+02 0.0056 30.4 7.5 40 15-58 356-395 (508)
90 PF00261 Tropomyosin: Tropomyo 25.2 5.9E+02 0.013 24.1 9.3 49 6-58 140-188 (237)
91 KOG0995 Centromere-associated 25.1 3E+02 0.0066 30.4 8.1 55 10-64 463-517 (581)
92 COG5608 LEA14-like dessication 25.0 20 0.00043 33.3 -0.5 15 193-207 105-119 (161)
93 PF04065 Not3: Not1 N-terminal 24.8 3.3E+02 0.0071 26.6 7.6 79 6-90 128-208 (233)
94 KOG0804 Cytoplasmic Zn-finger 24.7 3.4E+02 0.0074 29.3 8.2 18 42-59 378-395 (493)
95 PF06637 PV-1: PV-1 protein (P 24.5 3.1E+02 0.0068 29.1 7.8 12 25-36 335-346 (442)
96 KOG4484 Uncharacterized conser 24.2 6.4E+02 0.014 24.2 9.1 96 6-119 43-144 (199)
97 PRK14140 heat shock protein Gr 24.2 1.3E+02 0.0029 28.4 4.7 31 29-59 34-64 (191)
98 KOG0972 Huntingtin interacting 23.9 4.2E+02 0.0092 27.4 8.4 53 10-62 237-289 (384)
99 PF09403 FadA: Adhesion protei 23.7 2.7E+02 0.006 24.7 6.3 36 3-38 44-79 (126)
100 KOG0804 Cytoplasmic Zn-finger 23.4 4.5E+02 0.0098 28.5 8.8 41 16-56 380-420 (493)
101 PRK10093 primosomal replicatio 23.3 3.7E+02 0.0079 25.3 7.3 52 12-64 110-161 (171)
102 PF10063 DUF2301: Uncharacteri 23.1 1.1E+02 0.0023 27.8 3.7 38 286-335 78-117 (135)
103 KOG4797 Transcriptional regula 23.0 2.5E+02 0.0055 25.0 5.8 43 16-60 46-88 (123)
104 cd00632 Prefoldin_beta Prefold 22.7 3.2E+02 0.0068 22.6 6.2 53 12-64 28-88 (105)
105 COG4026 Uncharacterized protei 22.7 6.7E+02 0.014 25.1 9.2 18 113-130 244-261 (290)
106 PF04568 IATP: Mitochondrial A 22.6 3.1E+02 0.0068 23.5 6.2 19 21-39 72-90 (100)
107 PLN02400 cellulose synthase 22.5 1.1E+02 0.0023 36.0 4.5 27 182-210 905-931 (1085)
108 PF07445 priB_priC: Primosomal 22.5 5.4E+02 0.012 23.6 8.2 25 40-64 139-163 (173)
109 PF06825 HSBP1: Heat shock fac 22.3 1.4E+02 0.0029 23.1 3.6 36 24-59 13-48 (54)
110 smart00787 Spc7 Spc7 kinetocho 22.2 5.8E+02 0.013 25.7 9.0 21 39-59 204-224 (312)
111 PF05529 Bap31: B-cell recepto 22.1 2.7E+02 0.0058 25.3 6.2 13 44-56 159-171 (192)
112 KOG2629 Peroxisomal membrane a 21.8 6.1E+02 0.013 25.9 9.0 20 84-105 180-199 (300)
113 PF05957 DUF883: Bacterial pro 21.7 4.4E+02 0.0094 21.3 7.8 44 10-56 1-44 (94)
114 PF10392 COG5: Golgi transport 21.5 5.4E+02 0.012 22.3 9.0 27 38-64 71-97 (132)
115 PLN02190 cellulose synthase-li 21.4 1.6E+02 0.0034 33.5 5.3 58 145-209 546-604 (756)
116 TIGR01834 PHA_synth_III_E poly 21.1 3.5E+02 0.0075 27.8 7.2 28 38-65 288-315 (320)
117 PF15070 GOLGA2L5: Putative go 21.1 7.3E+02 0.016 27.5 10.1 58 5-66 13-70 (617)
118 PF10224 DUF2205: Predicted co 20.8 4.6E+02 0.01 21.7 6.7 36 1-36 1-38 (80)
119 TIGR03752 conj_TIGR03752 integ 20.6 4E+02 0.0087 28.8 7.8 39 19-57 67-105 (472)
120 PF14857 TMEM151: TMEM151 fami 20.6 40 0.00087 35.6 0.6 33 189-222 236-268 (425)
121 PF15290 Syntaphilin: Golgi-lo 20.3 1E+02 0.0022 31.3 3.3 39 70-110 108-146 (305)
122 PF04977 DivIC: Septum formati 20.3 3.1E+02 0.0068 20.7 5.4 27 38-64 23-49 (80)
123 PF05008 V-SNARE: Vesicle tran 20.2 4.1E+02 0.0089 20.5 6.2 48 12-65 4-51 (79)
124 smart00806 AIP3 Actin interact 20.2 5.3E+02 0.011 27.6 8.5 89 9-106 175-275 (426)
125 KOG2391 Vacuolar sorting prote 20.1 8.2E+02 0.018 25.7 9.6 12 131-142 300-311 (365)
No 1
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.1e-125 Score=920.74 Aligned_cols=313 Identities=34% Similarity=0.600 Sum_probs=294.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHHHHHHH
Q 017961 9 EKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEEDL 88 (363)
Q Consensus 9 ~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~~~l~~~i 88 (363)
.++...+..+|+||+.++|+.|+++|+||++ |+++++++|++|+++.+. | +++.++ +++++|
T Consensus 16 Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkk-------rLk~L~~sLk~~~~~~~~----e------~~~~i~-~L~~~I 77 (330)
T PF07851_consen 16 LQETHRSYKQKLEELSKLQDKCSSSISHQKK-------RLKELKKSLKRCKKSLSA----E------ERELIE-KLEEDI 77 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhccCCCh----h------HHHHHH-HHHHHH
Confidence 4556678899999999999999999999977 999999999999854222 2 236677 699999
Q ss_pred HHHhhhccccchhccCCCCCCCccceeecccceeeeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHH-HHhhcCCC
Q 017961 89 QKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILR-SWIWDGCL 167 (363)
Q Consensus 89 ~~~~~~~~~~dme~~LP~k~nG~yL~l~LG~vNvtll~k~~kf~yKdEYEkFKl~~t~i~ll~~~~ll~~~-~~~~~~~~ 167 (363)
++|+++++ |||++||+| ||+||+++||||||+++++++||+|||||||||+++|++++++|++|+++. +++.
T Consensus 78 k~r~~~l~--DmEa~LPkk-NGlyL~liLGnVNVsll~k~~kf~yKdEYEkFKl~~tii~l~~~~~~~~~~~~r~~---- 150 (330)
T PF07851_consen 78 KERRCQLF--DMEAFLPKK-NGLYLRLILGNVNVSLLSKQAKFKYKDEYEKFKLYLTIILLLFAVALLFLLNYRVL---- 150 (330)
T ss_pred HHHHhhHH--HHHhhCCCC-CCcccceecccccceecccccccchhhhHHHHHHHHHHHHHHHHHHHHHHcChHHH----
Confidence 99999999 999999985 999999999999999999999999999999999999999999999887754 4444
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHhhhhhhcccccCCCchhhhhhhhhHHHHHHHHHH
Q 017961 168 PAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQG 247 (363)
Q Consensus 168 ~~~~~~~~~flLvwyYcTLtiREsIL~vNGSrIkgWWv~HHY~S~~lsgv~LtWp~~~~p~~~~~~~f~~qFl~fs~~qs 247 (363)
+++|+|||||||||||||||||+||||||||||+.|||+||++||||||| |||+.||+||+||+.||+|||
T Consensus 151 ----d~~~~f~lvwyY~tLtiRE~IL~~NGS~Ik~WW~~HHy~s~~~s~v~Ltw-----p~~~~~~~fr~~fl~f~~~~~ 221 (330)
T PF07851_consen 151 ----DQLFNFLLVWYYCTLTIRESILIVNGSRIKGWWVFHHYISTFLSGVMLTW-----PDGEAYQKFRPQFLLFSLYQS 221 (330)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHhccccC-----CCcHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999999999 799999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHhccccccccc-ccCccccccchHhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHH
Q 017961 248 VAMLLQNRYQRQRLYTRIALGKAKRMDVV-WGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCG 326 (363)
Q Consensus 248 ~Vq~lQ~rYQrgcLYrl~ALGe~~~MDvt-~g~~~~v~ggLtfLlPfLf~g~~fQlYna~~L~~~~~~~~~~EWQV~~~~ 326 (363)
+||+||||||||||||||||||||+|||| +|++|||.||||||+||||+||+||+||||+||+++++|+|+||||+|||
T Consensus 222 ~vq~lQ~~YQ~~~Ly~l~AlG~~~~mdvt~eG~~s~~~~~L~fLlPfLf~~~~~q~yn~~~l~~~~~~~~~~ewqv~~~~ 301 (330)
T PF07851_consen 222 VVQFLQYRYQRGCLYRLRALGKRHNMDVTVEGFQSWMWRGLTFLLPFLFFGQFFQLYNAYTLFELSYHPECREWQVFVCG 301 (330)
T ss_pred HHHHHHHHHHHhHHHHHHHhccCccceeeecccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHH
Confidence 99999999999999999999999999999 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 017961 327 ALLVLMAVGNFINTVQTLMTKSRFKAKMK 355 (363)
Q Consensus 327 llf~il~~GNf~TTl~vv~~K~~~~~~~~ 355 (363)
++|++||+|||+||++|+++|+++++|||
T Consensus 302 ~~f~~l~~gN~~tt~~v~~~K~~~~~~~~ 330 (330)
T PF07851_consen 302 LLFLILFLGNFFTTLKVVHQKLKKKAKMK 330 (330)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999999999986
No 2
>KOG4758 consensus Predicted membrane protein [General function prediction only]
Probab=100.00 E-value=3.5e-81 Score=567.83 Aligned_cols=211 Identities=29% Similarity=0.389 Sum_probs=201.8
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHHHH-HHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHhhhhhhcCCCCCchhHH
Q 017961 127 KDVQLKVKEEYNSYRDRTALLFLLFPSTLL-ILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWI 205 (363)
Q Consensus 127 k~~kf~yKdEYEkFKl~~t~i~ll~~~~ll-~~~~~~~~~~~~~~~~~~~~flLvwyYcTLtiREsIL~vNGSrIkgWWv 205 (363)
+++|++|||||||||++.+++.+++++.+- .++.|..|. .|+|+|||||||||||||||++| |||||||+
T Consensus 1 ~~~k~~~Kd~~ek~K~~~~~~~~~is~~~~~~l~~R~~~~--------af~fllvwyycTltiresil~~n-srikgww~ 71 (220)
T KOG4758|consen 1 MEVEEEVKQIIDEVKELHDSAASFISFSSQQELNLRQKAS--------AFDFLLVWYYCTLTIRESILPKN-SRIKGWWA 71 (220)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHheeehhhhcccch-hhhhHHHH
Confidence 478999999999999999999999999884 467777664 78999999999999999999999 99999999
Q ss_pred HHHHHHHHhhhhhhcccccCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccccccc-cCccccc
Q 017961 206 YHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVW-GETAGVD 284 (363)
Q Consensus 206 ~HHY~S~~lsgv~LtWp~~~~p~~~~~~~f~~qFl~fs~~qs~Vq~lQ~rYQrgcLYrl~ALGe~~~MDvt~-g~~~~v~ 284 (363)
.|||+|+++||||||| |+|..||+||+||+.||+|||+||++||+||||||||++||||||+||+|. |+.||+.
T Consensus 72 ~hh~Vst~~sgvlltw-----PqG~~~q~Fr~qf~~fsl~~s~vq~lq~~Yqrg~lYRlkalger~~~d~Tvegf~SwmW 146 (220)
T KOG4758|consen 72 RHHLVSTETSGVLLTW-----PQGRFYQKFRNQFLVFSLYQSVVQFLQYYYQRGCLYRLKALGERHFMDLTVEGFQSWMW 146 (220)
T ss_pred HHhhhhhhhcceeecC-----CCcHHHHHHHhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccChhHHHHHHHHHH
Confidence 9999999999999999 799999999999999999999999999999999999999999999999996 8889999
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017961 285 GQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFK 351 (363)
Q Consensus 285 ggLtfLlPfLf~g~~fQlYna~~L~~~~~~~~~~EWQV~~~~llf~il~~GNf~TTl~vv~~K~~~~ 351 (363)
|||+||+||||+|||||+|||+|||.++.+|.|.||||.++|.+|+++|+||+.||++||+.|.+..
T Consensus 147 rGltfllPflf~g~~~QlynAwtLf~lA~~~~~~~w~v~~~s~~fl~lF~gn~~ttl~vV~~k~~~~ 213 (220)
T KOG4758|consen 147 RGLTFLLPFLFIGHFWQLYNAWTLFLLAGLPMCEEWQVAVGSFIFLLLFLGNFPTTLMVVHIKIREE 213 (220)
T ss_pred CcchhhhhHHHhhHHHHHHHHHHHHHHccCccchHHHHHhccchHHHHHhcCCccchhhhhHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999998873
No 3
>KOG4758 consensus Predicted membrane protein [General function prediction only]
Probab=99.64 E-value=4.5e-16 Score=142.97 Aligned_cols=184 Identities=28% Similarity=0.326 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHHHHHHHHH
Q 017961 11 VEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEEDLQK 90 (363)
Q Consensus 11 ~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~~~l~~~i~~ 90 (363)
++++|+++..||.+.+.+.+.+.|+-....+..+|+.....+..|.+.-..+..- | +|.++. .+.+.-.
T Consensus 2 ~~k~~~Kd~~ek~K~~~~~~~~~is~~~~~~l~~R~~~~af~fllvwyycTltir---e----sil~~n----srikgww 70 (220)
T KOG4758|consen 2 EVEEEVKQIIDEVKELHDSAASFISFSSQQELNLRQKASAFDFLLVWYYCTLTIR---E----SILPKN----SRIKGWW 70 (220)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeehh---h----hcccch----hhhhHHH
Confidence 5688999999999999999999999988889999999999999999876444432 1 133333 3466788
Q ss_pred HhhhccccchhccCCCCCCCccceeecccceeeeccccccccchhhhhh---hHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017961 91 AQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNS---YRDRTALLFLLFPSTLLILRSWIWDGCL 167 (363)
Q Consensus 91 ~~~~~~~~dme~~LP~k~nG~yL~l~LG~vNvtll~k~~kf~yKdEYEk---FKl~~t~i~ll~~~~ll~~~~~~~~~~~ 167 (363)
+.+.+-+++..+++|.+|+|.+.+.+-|++|+..+.++.....|.+|.+ +|++.......++.++.-+.+|.|.||.
T Consensus 71 ~~hh~Vst~~sgvlltwPqG~~~q~Fr~qf~~fsl~~s~vq~lq~~Yqrg~lYRlkalger~~~d~Tvegf~SwmWrGlt 150 (220)
T KOG4758|consen 71 ARHHLVSTETSGVLLTWPQGRFYQKFRNQFLVFSLYQSVVQFLQYYYQRGCLYRLKALGERHFMDLTVEGFQSWMWRGLT 150 (220)
T ss_pred HHHhhhhhhhcceeecCCCcHHHHHHHhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccChhHHHHHHHHHHCcch
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred Ccch-------HHHHHHHHHHHHHHHHHhhhhhhcCCCCCchhHH
Q 017961 168 PAFP-------VQLYQAWLLFLYTGLALRENILRINGSDIRPWWI 205 (363)
Q Consensus 168 ~~~~-------~~~~~flLvwyYcTLtiREsIL~vNGSrIkgWWv 205 (363)
+.+| .|+|++|.++-|..+..||++++.|||.|..|-.
T Consensus 151 fllPflf~g~~~QlynAwtLf~lA~~~~~~~w~v~~~s~~fl~lF 195 (220)
T KOG4758|consen 151 FLLPFLFIGHFWQLYNAWTLFLLAGLPMCEEWQVAVGSFIFLLLF 195 (220)
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHccCccchHHHHHhccchHHHHH
Confidence 9888 9999999999999999999999999999999843
No 4
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=94.38 E-value=0.16 Score=51.18 Aligned_cols=121 Identities=21% Similarity=0.181 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHHHHHHHHH
Q 017961 11 VEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEEDLQK 90 (363)
Q Consensus 11 ~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~~~l~~~i~~ 90 (363)
++++||++..+|.++||+++..++.+.....+..++..+++++..+|+++-..++.+-+.. .+.. -.+.+++
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~-----~~~e---~~~~i~~ 72 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKS-----LSAE---ERELIEK 72 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----CChh---HHHHHHH
Confidence 4789999999999999999999999966655555666666666666665333332100111 1122 2355666
Q ss_pred HhhhccccchhccCCCCCCCccceeeccc-ceeeeccccccccchhhhhhhHHH
Q 017961 91 AQCLIYDGDASAFLPSKAQGAFVKMFIGP-INVRASRKDVQLKVKEEYNSYRDR 143 (363)
Q Consensus 91 ~~~~~~~~dme~~LP~k~nG~yL~l~LG~-vNvtll~k~~kf~yKdEYEkFKl~ 143 (363)
.+..+. +.+.-+- .-..||---=|- +++.+-+-+.+.-=|++==++|+-
T Consensus 73 L~~~Ik--~r~~~l~--DmEa~LPkkNGlyL~liLGnVNVsll~k~~kf~yKdE 122 (330)
T PF07851_consen 73 LEEDIK--ERRCQLF--DMEAFLPKKNGLYLRLILGNVNVSLLSKQAKFKYKDE 122 (330)
T ss_pred HHHHHH--HHHhhHH--HHHhhCCCCCCcccceecccccceecccccccchhhh
Confidence 666565 3333332 123344222232 666666666666566665555543
No 5
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.47 E-value=4.1 Score=40.28 Aligned_cols=89 Identities=15% Similarity=0.267 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHHHHH
Q 017961 7 NCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEE 86 (363)
Q Consensus 7 ~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~~~l~~ 86 (363)
+-..++.++....-+|+.+|++.+.+..+++ +.+++++..+...|++++. .++ ++++
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~----~~~~~~i~~~~~eik~l~~------------------eI~-~~~~ 94 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKI----DELQKEIDQSKAEIKKLQK------------------EIA-ELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH------------------HHH-HHHH
Confidence 3345556666666666666666655555543 4466677777777776652 333 3667
Q ss_pred HHHHHhhhccccchhcc-CCCCCCCccceeecccc
Q 017961 87 DLQKAQCLIYDGDASAF-LPSKAQGAFVKMFIGPI 120 (363)
Q Consensus 87 ~i~~~~~~~~~~dme~~-LP~k~nG~yL~l~LG~v 120 (363)
+|.+|+..+.+ -+++. -..... -|+.+|||.=
T Consensus 95 ~I~~r~~~l~~-raRAmq~nG~~t-~Yidvil~Sk 127 (265)
T COG3883 95 NIVERQELLKK-RARAMQVNGTAT-SYIDVILNSK 127 (265)
T ss_pred HHHHHHHHHHH-HHHHHHHcCChh-HHHHHHHccC
Confidence 77777777753 22222 121122 3899888853
No 6
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=72.92 E-value=11 Score=41.81 Aligned_cols=61 Identities=31% Similarity=0.361 Sum_probs=40.8
Q ss_pred hhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhcccc
Q 017961 4 KRSNCEKVEEEEVERVVEE-AKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSS 65 (363)
Q Consensus 4 ~~~~~~~~~~~e~~~klee-~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~ 65 (363)
+|-.+|+.+.+|=+++.+| .++-+..+....+|+ .-.+++++|.++|+..+++++.++...
T Consensus 503 ~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~-e~~e~~r~r~~~lE~E~~~lr~elk~k 564 (697)
T PF09726_consen 503 QRASLEKQLQEERKARKEEEEKAARALAQAQATRQ-ECAESCRQRRRQLESELKKLRRELKQK 564 (697)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777776544443 333333333444554 667789999999999999998777774
No 7
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=71.83 E-value=14 Score=34.41 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhhhhhhcCC
Q 017961 176 QAWLLFLYTGLALRENILRING 197 (363)
Q Consensus 176 ~flLvwyYcTLtiREsIL~vNG 197 (363)
.|..+|.-||++||.||-+.=|
T Consensus 142 SfiFLYiLCtmsiRqNlQK~LG 163 (186)
T KOG3312|consen 142 SFIFLYILCTMSIRQNLQKILG 163 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 4667899999999999987666
No 8
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=71.04 E-value=83 Score=29.96 Aligned_cols=79 Identities=20% Similarity=0.287 Sum_probs=54.1
Q ss_pred CCCCchhHHHHHHHHHHhhhhhhcccccCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhccccccccc
Q 017961 197 GSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVV 276 (363)
Q Consensus 197 GSrIkgWWv~HHY~S~~lsgv~LtWp~~~~p~~~~~~~f~~qFl~fs~~qs~Vq~lQ~rYQrgcLYrl~ALGe~~~MDvt 276 (363)
+.++--==+.||-.....+-..+.+. |++.. ....+.-++|..+=|-| |-+.|+|-+. ..
T Consensus 115 kK~lsfLHvYHH~~~~~~~w~~~~~~----~~~~~--------~~~~~~N~~VH~iMY~Y-----Y~l~a~g~~~-~~-- 174 (250)
T PF01151_consen 115 KKQLSFLHVYHHASTLLYCWISYKYG----PGGQI--------WFIAALNSFVHVIMYSY-----YFLSALGIRK-VP-- 174 (250)
T ss_pred CCCcchhHHhhhhhhhhhhhheeeec----cccch--------hHHHHHHHHHHHHHHHH-----HHHHhccccc-ch--
Confidence 44666666789998888888877773 22221 22347899999999999 9999999331 11
Q ss_pred ccCccccccchHhHHHHHHHHHHHHHHHHH
Q 017961 277 WGETAGVDGQLWLLCPILFILQGFEAYVGL 306 (363)
Q Consensus 277 ~g~~~~v~ggLtfLlPfLf~g~~fQlYna~ 306 (363)
...=|.+-.+|+.|+-.+.
T Consensus 175 -----------~~~k~~IT~~Qi~QF~~~~ 193 (250)
T PF01151_consen 175 -----------RWWKKYITSLQIVQFVIGI 193 (250)
T ss_pred -----------hHHHHHHhHHhhhhhHHHH
Confidence 2224666777888876655
No 9
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=68.71 E-value=44 Score=31.06 Aligned_cols=81 Identities=22% Similarity=0.308 Sum_probs=52.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHH
Q 017961 4 KRSNCEKVEEEEVERVVEEAKELQEAAATLINR--TSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLAD 81 (363)
Q Consensus 4 ~~~~~~~~~~~e~~~klee~~~LQ~~~~s~i~r--q~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~ 81 (363)
++.+-.+.+.+++++.-++..+|++.....-.. ...|-..+-+++.+|...+++++..+.... ..+|+.++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~-------~~Dp~~i~ 138 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYS-------ENDPEKIE 138 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCHHHHH
Confidence 345556778888888888888888887776322 112334566677777777777776655431 23678777
Q ss_pred HHHHHHHHHHh
Q 017961 82 KQLEEDLQKAQ 92 (363)
Q Consensus 82 ~~l~~~i~~~~ 92 (363)
++++++..++
T Consensus 139 -~~~~~~~~~~ 148 (188)
T PF03962_consen 139 -KLKEEIKIAK 148 (188)
T ss_pred -HHHHHHHHHH
Confidence 4777665553
No 10
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=66.84 E-value=52 Score=29.25 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 017961 9 EKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRS 60 (363)
Q Consensus 9 ~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~ 60 (363)
.++++.+.+.+.++..+=|.+.+++..... ++.+++..|.+|..
T Consensus 58 iKevd~~~~~l~~~~~erqk~~~k~ae~L~--------kv~els~~L~~~~~ 101 (131)
T PF10158_consen 58 IKEVDQEIAKLLQQMVERQKRFAKFAEQLE--------KVNELSQQLSRCQS 101 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 466666667777777777777666666532 37777778877773
No 11
>PRK11637 AmiB activator; Provisional
Probab=66.76 E-value=23 Score=36.13 Aligned_cols=8 Identities=25% Similarity=0.953 Sum_probs=6.2
Q ss_pred hhcccccC
Q 017961 218 SLTWEIKG 225 (363)
Q Consensus 218 ~LtWp~~~ 225 (363)
.+.||++|
T Consensus 306 ~~~~Pv~g 313 (428)
T PRK11637 306 QAFWPVRG 313 (428)
T ss_pred CCccCCCC
Confidence 57899865
No 12
>COG1422 Predicted membrane protein [Function unknown]
Probab=64.63 E-value=97 Score=29.80 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHhhhhhhcc
Q 017961 177 AWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTW 221 (363)
Q Consensus 177 flLvwyYcTLtiREsIL~vNGSrIkgWWv~HHY~S~~lsgv~LtW 221 (363)
.||-|.|-+..++-+ +-.+--||..|-.+.++..|.++.|
T Consensus 137 ~Wl~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~gW 176 (201)
T COG1422 137 AWLRWFVGTGGYLVS-----EPNMALPTLFHILYHTAVFGDFLGW 176 (201)
T ss_pred HHHHHHHccCccccc-----CccchhHHhhhhhhhccccccchHH
Confidence 577777777776622 2556779999999999999999998
No 13
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=60.69 E-value=17 Score=34.46 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=13.2
Q ss_pred eccccccccchhhhhhh
Q 017961 124 ASRKDVQLKVKEEYNSY 140 (363)
Q Consensus 124 ll~k~~kf~yKdEYEkF 140 (363)
..+++++=..+++|++.
T Consensus 148 ~vtpedk~~v~~~y~~~ 164 (201)
T KOG4603|consen 148 HVTPEDKEQVYREYQKY 164 (201)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 34677888888999875
No 14
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=56.06 E-value=59 Score=29.33 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 8 CEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 8 ~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
..+++.++.+.|++.+-.+-....+-+.-...|...|+.|.+...+.+++++
T Consensus 30 tLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk 81 (162)
T PF05565_consen 30 TLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLK 81 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555565555555444444444444444444444444444444433
No 15
>KOG4418 consensus Predicted membrane protein [Function unknown]
Probab=55.69 E-value=5.6 Score=41.55 Aligned_cols=25 Identities=24% Similarity=0.664 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHhhhhhhcccccCC
Q 017961 202 PWWIYHHYCAMLMALVSLTWEIKGQ 226 (363)
Q Consensus 202 gWWv~HHY~S~~lsgv~LtWp~~~~ 226 (363)
-||..||++-+..++.+.|||+.+.
T Consensus 15 ~w~rH~gF~iTyt~lLlkiwr~S~~ 39 (438)
T KOG4418|consen 15 TWWRHHGFIITYTYLLLKIWRTSGA 39 (438)
T ss_pred HHHHhhchhhhhhhhHhhcccccce
Confidence 4999999999999999999998664
No 16
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=55.40 E-value=66 Score=25.75 Aligned_cols=46 Identities=24% Similarity=0.462 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 017961 11 VEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRS 60 (363)
Q Consensus 11 ~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~ 60 (363)
+=.+.|+++.+|-.+|+..-..+.+-+++ |+...+++...+..++.
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKK----Lr~~~~e~e~~~~~l~~ 54 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKK----LRAKIKELEKQIKELKK 54 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34577888888888887776666555433 77778887777777653
No 17
>PRK11637 AmiB activator; Provisional
Probab=53.94 E-value=76 Score=32.43 Aligned_cols=9 Identities=0% Similarity=0.032 Sum_probs=6.0
Q ss_pred cceeecccc
Q 017961 112 FVKMFIGPI 120 (363)
Q Consensus 112 yL~l~LG~v 120 (363)
||.++++.=
T Consensus 141 ~l~vLl~a~ 149 (428)
T PRK11637 141 GLQLILSGE 149 (428)
T ss_pred HHHHHhcCC
Confidence 677777753
No 18
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=53.70 E-value=95 Score=25.03 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=33.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 017961 5 RSNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLL 62 (363)
Q Consensus 5 ~~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l 62 (363)
--||.+++.++..+...+-.+=-+.-..-.+..+.+..+|+.++..|..-+.++.+++
T Consensus 8 Ll~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 8 LLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888877776654332222222333344455677777777776666655433
No 19
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=51.10 E-value=22 Score=23.29 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 017961 40 EEQSLRQRALSLDSNIRRLRS 60 (363)
Q Consensus 40 e~~~l~~rl~~L~~~lkr~k~ 60 (363)
|.+.++.|+.+|+..|..|++
T Consensus 2 E~~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECRR 22 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHhc
Confidence 567889999999999988873
No 20
>PRK04406 hypothetical protein; Provisional
Probab=50.89 E-value=1.3e+02 Score=24.28 Aligned_cols=32 Identities=3% Similarity=0.101 Sum_probs=21.7
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 28 EAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 28 ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
+.-+.-+.+|.++.+.|+++++.|...++...
T Consensus 28 e~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 28 EELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445566777777888888887777666543
No 21
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=50.61 E-value=1e+02 Score=23.16 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 017961 10 KVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNI 55 (363)
Q Consensus 10 ~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~l 55 (363)
+.+.+|+...-+.+.++.+.+...++..-.+.+.+++++.+|...-
T Consensus 44 ~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w 89 (105)
T PF00435_consen 44 KELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRW 89 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3444444444445555555555444444444444444444444433
No 22
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=50.02 E-value=1.2e+02 Score=28.44 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=19.3
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 017961 32 TLINRTSSEEQSLRQRALSLDSNIRRLRSLLH 63 (363)
Q Consensus 32 s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~ 63 (363)
..+.+++.+.+..++++.++...++..++.+.
T Consensus 77 ~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 77 ERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666777777777665554443
No 23
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=49.41 E-value=76 Score=32.54 Aligned_cols=13 Identities=0% Similarity=0.261 Sum_probs=6.0
Q ss_pred HHHHHHHHhhhcc
Q 017961 84 LEEDLQKAQCLIY 96 (363)
Q Consensus 84 l~~~i~~~~~~~~ 96 (363)
++.+|+++-..+.
T Consensus 313 vK~emeerg~~mt 325 (359)
T PF10498_consen 313 VKQEMEERGSSMT 325 (359)
T ss_pred HHHHHHHhcCCCC
Confidence 4444444444444
No 24
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=48.43 E-value=1e+02 Score=30.63 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 017961 10 KVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHS 64 (363)
Q Consensus 10 ~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~ 64 (363)
..+.+.-+.+-+|+..|++.....-+--..|..++++++.+++..|...++.+..
T Consensus 180 ~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~e 234 (325)
T PF08317_consen 180 PKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAE 234 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566666666655433333456777777777777777755544444
No 25
>KOG4054 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.27 E-value=1.8e+02 Score=27.66 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=41.9
Q ss_pred HHHHHHH----HHHHHhhhhhhHHHHHhcccccccccccCccccccchHhHH-HHHHHHHHHHHHHHHHHHHhh
Q 017961 244 MMQGVAM----LLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLC-PILFILQGFEAYVGLLLLKTA 312 (363)
Q Consensus 244 ~~qs~Vq----~lQ~rYQrgcLYrl~ALGe~~~MDvt~g~~~~v~ggLtfLl-PfLf~g~~fQlYna~~L~~~~ 312 (363)
+-.++|+ +++.-||=-++.-+-+++|+++--.++++.++ +.+. -.-+-.|+||+|.+..|..-.
T Consensus 105 ~a~~lf~i~p~~~~~~~~f~~v~e~~t~~e~~~s~~~~~~~p~-----~y~~~~la~qVh~~~ly~~~~Lv~aw 173 (183)
T KOG4054|consen 105 IAMGLFMIFPLVYGVGGQFCAVRELATMEERNSSTTVKLEFPG-----WYLFLVLAVQVHGFQLYFSKKLVDAW 173 (183)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHccccccceeeecccH-----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566 56666677788888999999988333333332 2222 223567999999999997543
No 26
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=47.17 E-value=1.5e+02 Score=26.40 Aligned_cols=51 Identities=24% Similarity=0.383 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HhhhhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 017961 12 EEEEVERVVEEAKELQEAAATL-------INRTSSEEQSLRQRALSLDSNIRRLRSLLHS 64 (363)
Q Consensus 12 ~~~e~~~klee~~~LQ~~~~s~-------i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~ 64 (363)
+..|+.++-+|+.+|+..++.. .+.- ..+.|+..+.++...++.++..+..
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~--t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEP--TNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444443 3332 1233455555555555554444433
No 27
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=46.67 E-value=66 Score=35.84 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 017961 43 SLRQRALSLDSNI 55 (363)
Q Consensus 43 ~l~~rl~~L~~~l 55 (363)
.|.+|++.+...+
T Consensus 611 ~L~~R~~~vl~~l 623 (717)
T PF10168_consen 611 KLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHH
Confidence 3555555444443
No 28
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=45.27 E-value=80 Score=25.97 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHH
Q 017961 22 EAKELQEAAATLINRTSS---EEQSLRQRALSLDSNIRR 57 (363)
Q Consensus 22 e~~~LQ~~~~s~i~rq~~---e~~~l~~rl~~L~~~lkr 57 (363)
++++-++.+++.|....+ +.+.|..+++.++..|+.
T Consensus 47 ~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~ 85 (108)
T PF02403_consen 47 ELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKE 85 (108)
T ss_dssp HHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH
Confidence 333333444444433332 334444444444444433
No 29
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=44.36 E-value=2e+02 Score=25.40 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 017961 12 EEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHS 64 (363)
Q Consensus 12 ~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~ 64 (363)
+.+|+...=|..+.=.+++.++=.+--...|.|.+|+..+.+++..++.++++
T Consensus 13 l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVse 65 (112)
T PF07439_consen 13 LNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSE 65 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 33334333333333333333333333345677777777777777766644444
No 30
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=44.08 E-value=16 Score=28.16 Aligned_cols=20 Identities=20% Similarity=0.692 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHhhhhhhcc
Q 017961 202 PWWIYHHYCAMLMALVSLTW 221 (363)
Q Consensus 202 gWWv~HHY~S~~lsgv~LtW 221 (363)
||||+--++.++.||.|..=
T Consensus 2 PwWvY~vi~gI~~S~ym~v~ 21 (52)
T PF14147_consen 2 PWWVYFVIAGIIFSGYMAVK 21 (52)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 89999999999999999863
No 31
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=43.89 E-value=3.3e+02 Score=26.83 Aligned_cols=40 Identities=8% Similarity=0.152 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 017961 19 VVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRL 58 (363)
Q Consensus 19 klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~ 58 (363)
.++|++.-++...++++-.....+...++.+.+.++|+..
T Consensus 44 e~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eT 83 (230)
T PF03904_consen 44 EIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEET 83 (230)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666677777777666777777777777777654
No 32
>PTZ00251 fatty acid elongase; Provisional
Probab=42.82 E-value=3.4e+02 Score=26.74 Aligned_cols=78 Identities=21% Similarity=0.226 Sum_probs=50.2
Q ss_pred CCchhHHHHHHHHHHhhhhhhcccccCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhccccccccccc
Q 017961 199 DIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWG 278 (363)
Q Consensus 199 rIkgWWv~HHY~S~~lsgv~LtWp~~~~p~~~~~~~f~~qFl~fs~~qs~Vq~lQ~rYQrgcLYrl~ALGe~~~MDvt~g 278 (363)
++--==+.||-...+.+=.. +. + .-.-+..+.++-++|..+=|.| |-+.|+|.+.+ +.
T Consensus 138 qvsFLHvYHH~~~~~~~w~~--~~----~-------g~~~~~~~~~lNs~VH~iMY~Y-----Y~lsa~g~~~~--~~-- 195 (272)
T PTZ00251 138 KLPFLSWFHHVTIFLYAWMS--YQ----Q-------GSSIWICAAAMNYFVHSIMYFY-----FALSEAGFKKL--VK-- 195 (272)
T ss_pred CchHHHHHHHHHHHHHHHHH--Hh----C-------CCcHHHHHHHHHHHHHHHHHHH-----HHHHhcCCchh--hh--
Confidence 66655678997664433332 10 1 1122444689999999999999 99999997632 11
Q ss_pred CccccccchHhHHHHHHHHHHHHHHHHHHH
Q 017961 279 ETAGVDGQLWLLCPILFILQGFEAYVGLLL 308 (363)
Q Consensus 279 ~~~~v~ggLtfLlPfLf~g~~fQlYna~~L 308 (363)
. .-+.+-..|+.|+..+...
T Consensus 196 ---------~-~kk~IT~lQi~Qfv~~~~~ 215 (272)
T PTZ00251 196 ---------P-FAMYITLLQITQMVGGLFV 215 (272)
T ss_pred ---------H-HHHHHHHHHHHHHHHHHHH
Confidence 0 1267788888888766433
No 33
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=40.71 E-value=1.6e+02 Score=29.24 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 8 CEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 8 ~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
.|+.+.+-+....+++.++++.+.+.-+-...=+..+.++-.+|+.+-||++
T Consensus 163 iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~ 214 (267)
T PF10234_consen 163 IEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQ 214 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666555433322222333444444444444443
No 34
>PF13864 Enkurin: Calmodulin-binding
Probab=40.68 E-value=50 Score=27.32 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 017961 42 QSLRQRALSLDSNIRR 57 (363)
Q Consensus 42 ~~l~~rl~~L~~~lkr 57 (363)
+.|+++-.++...+.+
T Consensus 47 ~~Lk~~~~el~~ey~~ 62 (98)
T PF13864_consen 47 EGLKKNWDELNKEYQK 62 (98)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3455555555555444
No 35
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=40.47 E-value=2.1e+02 Score=25.48 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHh
Q 017961 45 RQRALSLDSNIRRLR 59 (363)
Q Consensus 45 ~~rl~~L~~~lkr~k 59 (363)
.+|+..++..|..+.
T Consensus 67 sqRId~vd~klDe~~ 81 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQK 81 (126)
T ss_pred HHHHHHHHhhHHHHH
Confidence 346666666666554
No 36
>PLN03217 transcription factor ATBS1; Provisional
Probab=40.37 E-value=36 Score=28.93 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 017961 19 VVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSN 54 (363)
Q Consensus 19 klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~ 54 (363)
+.-..+-||++| +||..--.|.|.|..|+.+|-.+
T Consensus 44 k~saskvLqEtC-~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 44 KVSAARVLQDTC-NYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred cccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455688888 48888888889998888887543
No 37
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=39.86 E-value=63 Score=37.69 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=19.9
Q ss_pred HHHHHHHhhhhhhcCCCCCchhHHHHHHH
Q 017961 182 LYTGLALRENILRINGSDIRPWWIYHHYC 210 (363)
Q Consensus 182 yYcTLtiREsIL~vNGSrIkgWWv~HHY~ 210 (363)
.++...+.| .+-.|-.|+.||..+-|+
T Consensus 864 s~~~~~lLE--~~wsG~si~~WWrnQq~w 890 (1044)
T PLN02915 864 SIIATSVLE--LRWSGVSIEDLWRNEQFW 890 (1044)
T ss_pred HHHHHHHHH--HHhcCCCHHHHHhhhhHH
Confidence 455666777 335677799999999886
No 38
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=39.42 E-value=1.2e+02 Score=31.42 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHhh--hhh-hhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHHHHHHHHHHhhh
Q 017961 18 RVVEEAKELQEAAATLINR--TSS-EEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEEDLQKAQCL 94 (363)
Q Consensus 18 ~klee~~~LQ~~~~s~i~r--q~~-e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~~~l~~~i~~~~~~ 94 (363)
..++++++-++..++.|.. ..+ +.++|+++.+++++.|+.++.++ ..+++++.+.+....|.
T Consensus 42 ~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 42 TELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAEL---------------DELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhCCCC
Confidence 3455566666666777754 222 34567777777777776655222 22223466666677777
Q ss_pred cc
Q 017961 95 IY 96 (363)
Q Consensus 95 ~~ 96 (363)
..
T Consensus 107 ~~ 108 (425)
T PRK05431 107 PH 108 (425)
T ss_pred CC
Confidence 75
No 39
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=37.75 E-value=2.8e+02 Score=24.31 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 017961 9 EKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRA 48 (363)
Q Consensus 9 ~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl 48 (363)
-++-.+++++.-+++.+++......++.-+.|.+.+...+
T Consensus 43 I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a 82 (141)
T PRK08476 43 IKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKA 82 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455555566666666666666666666555554443
No 40
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=37.67 E-value=1.4e+02 Score=31.50 Aligned_cols=90 Identities=17% Similarity=0.280 Sum_probs=52.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH---------------HHhhhhhhhHHHHHHHHHHHHHHHHHhhhcccccc---
Q 017961 6 SNCEKVEEEEVERVVEEAKELQEAAAT---------------LINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSIS--- 67 (363)
Q Consensus 6 ~~~~~~~~~e~~~klee~~~LQ~~~~s---------------~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~--- 67 (363)
++|.+.+.++...++..+.+||+..-. .+..-.++.+.+.+.++.+...+++.++.....=+
T Consensus 205 ~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL 284 (424)
T PF03915_consen 205 ESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESEL 284 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 578889999999999999999987532 23333344455555555555555544433221110
Q ss_pred ----ccccccccChHHHHHHHHHHHHHHhhhcc
Q 017961 68 ----STNNLLRFDSKLADKQLEEDLQKAQCLIY 96 (363)
Q Consensus 68 ----~e~~~~~~~~~~~~~~l~~~i~~~~~~~~ 96 (363)
.|..-.....+++. +|++|++.+...|.
T Consensus 285 ~~V~eEQqfL~~QedL~~-DL~eDl~k~~etf~ 316 (424)
T PF03915_consen 285 QKVCEEQQFLKLQEDLLS-DLKEDLKKASETFA 316 (424)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 12222222334455 48888888877665
No 41
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=37.02 E-value=2.1e+02 Score=27.47 Aligned_cols=51 Identities=24% Similarity=0.325 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 017961 10 KVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRS 60 (363)
Q Consensus 10 ~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~ 60 (363)
+++++-...++++++.-.+.......+.+.|...++..+..+...|..++.
T Consensus 187 ~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~ 237 (312)
T PF00038_consen 187 EELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRA 237 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhcccc
Confidence 445555666777777766666777777777776777777777666665543
No 42
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=36.24 E-value=1.8e+02 Score=31.09 Aligned_cols=56 Identities=7% Similarity=0.110 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhcccc
Q 017961 10 KVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSS 65 (363)
Q Consensus 10 ~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~ 65 (363)
+.=.+.++..+.++.+-|++.++....++.|.++++.++...+..|+++++....+
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l 67 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQL 67 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777788888888888889999999999999999999988766554
No 43
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=36.22 E-value=1.6e+02 Score=27.10 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 11 VEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 11 ~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
+..++....|+++...|+.. .-|.+.+.|.++|-.+++++-..|..|+
T Consensus 9 ~~d~~L~~~L~~l~~hq~~~-~~I~~L~~e~~~ld~~i~~~~~~L~~~~ 56 (188)
T PF10018_consen 9 EADDELSSALEELQEHQENQ-ARIQQLRAEIEELDEQIRDILKQLKEAR 56 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666553 2344444444444444444444444444
No 44
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=35.83 E-value=2.5e+02 Score=26.30 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 017961 242 WAMMQGVAMLLQ 253 (363)
Q Consensus 242 fs~~qs~Vq~lQ 253 (363)
|-+-..++|++.
T Consensus 262 ~lLn~nI~~L~~ 273 (302)
T PF10186_consen 262 FLLNKNIAQLCF 273 (302)
T ss_pred HHHHHHHHHHHH
Confidence 445666777665
No 45
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.14 E-value=2.7e+02 Score=24.85 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 017961 44 LRQRALSLDSNIRRLR 59 (363)
Q Consensus 44 l~~rl~~L~~~lkr~k 59 (363)
|++++..+.+.|..++
T Consensus 121 l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 121 LEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 46
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=35.02 E-value=2.7e+02 Score=31.47 Aligned_cols=78 Identities=23% Similarity=0.223 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHHHHH
Q 017961 7 NCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEE 86 (363)
Q Consensus 7 ~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~~~l~~ 86 (363)
...+....|+.+.-.|++.|.+.....-.+++.+.+.++.++++|...+.++.+.... +.+.+. .|+.
T Consensus 359 ~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re-----------~qeri~-~LE~ 426 (717)
T PF09730_consen 359 CKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSRE-----------DQERIS-ELEK 426 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hHHHHH-HHHH
Confidence 3345677888888888998888888888888887777888888888887776532222 223444 4777
Q ss_pred HHHHHhhhcc
Q 017961 87 DLQKAQCLIY 96 (363)
Q Consensus 87 ~i~~~~~~~~ 96 (363)
++......--
T Consensus 427 ELr~l~~~A~ 436 (717)
T PF09730_consen 427 ELRALSKLAG 436 (717)
T ss_pred HHHHHHHHHH
Confidence 7777666553
No 47
>PLN02189 cellulose synthase
Probab=34.61 E-value=75 Score=37.11 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhhhhcCCCCCchhHHHHHHH
Q 017961 180 LFLYTGLALRENILRINGSDIRPWWIYHHYC 210 (363)
Q Consensus 180 vwyYcTLtiREsIL~vNGSrIkgWWv~HHY~ 210 (363)
+-.+++..+=| ++--|-.|+.||..+-++
T Consensus 860 f~~~~~~~llE--~~~sG~s~~~WWrnQq~w 888 (1040)
T PLN02189 860 FMSIFATGILE--LRWSGVSIEEWWRNEQFW 888 (1040)
T ss_pred HHHHHHHHHHH--HHhcCCcHHHHhhhhhHH
Confidence 34677888888 555688899999998876
No 48
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=34.55 E-value=1.8e+02 Score=31.75 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=49.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccc
Q 017961 4 KRSNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSI 66 (363)
Q Consensus 4 ~~~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~ 66 (363)
|-+++..+.++....-++.+...|+...+++.+.+.-.|+|-+.+.+++...-..++++...+
T Consensus 384 rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kI 446 (531)
T PF15450_consen 384 RLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKI 446 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 455666777778888889999999999999999888888888888888777666665555544
No 49
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=34.42 E-value=2.3e+02 Score=26.97 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q 017961 43 SLRQRALSLDSNIRRLRSLLHS 64 (363)
Q Consensus 43 ~l~~rl~~L~~~lkr~k~~l~~ 64 (363)
.+..|++.++...+|+.+-+..
T Consensus 136 D~~arl~~l~~~~~rl~~ll~k 157 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEK 157 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3555777777777776644443
No 50
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=34.00 E-value=2.6e+02 Score=31.42 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHHHHHHHH
Q 017961 10 KVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEEDLQ 89 (363)
Q Consensus 10 ~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~~~l~~~i~ 89 (363)
+...+.++++++. ++.+......++ +.++...++.--++... +++++++
T Consensus 319 ~~~l~~l~~v~~~--nl~~~v~~~~~~-----------~~~ip~~v~~qt~~~v~------------------~ik~~l~ 367 (806)
T PF05478_consen 319 TSQLNNLEEVIKT--NLSSIVQEGNSR-----------FNDIPEKVQNQTSDVVP------------------PIKRDLD 367 (806)
T ss_pred HHHHHHHHHHHhc--cHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhH------------------HHHHHHH
Q ss_pred HHhhhccccchhccCCCCCCCccceeecccceeeeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 017961 90 KAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPA 169 (363)
Q Consensus 90 ~~~~~~~~~dme~~LP~k~nG~yL~l~LG~vNvtll~k~~kf~yKdEYEkFKl~~t~i~ll~~~~ll~~~~~~~~~~~~~ 169 (363)
+.+..+. ++...+|...+..+-.++.-..+.+ -.|.++|++|-.+..++.++++++++++
T Consensus 368 ~~~~~i~--~~a~~i~~~~~~~~s~~~~~~~~~~-------~~~~~~~~~y~~yR~~~~lil~~~llLI----------- 427 (806)
T PF05478_consen 368 SIGKQIR--SQAKQIPNQIDSNISDILNNTERSS-------RSFEDEYEKYDSYRWIVGLILCCVLLLI----------- 427 (806)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHh-------hcchhHHHHHHHHHHHHHHHHHHHHHHH-----------
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHhhhhhhcccccCCCchhhhhhhhhHHHHHHHHHHHH
Q 017961 170 FPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVA 249 (363)
Q Consensus 170 ~~~~~~~flLvwyYcTLtiREsIL~vNGSrIkgWWv~HHY~S~~lsgv~LtWp~~~~p~~~~~~~f~~qFl~fs~~qs~V 249 (363)
++.++.+|..-==-++-+-..-.+=+...-=-.+.|+||.++. -|.++-+..+++
T Consensus 428 ---------v~~~~lGLl~G~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~F----------------lf~~~l~l~~~~ 482 (806)
T PF05478_consen 428 ---------VLCLLLGLLCGCCGYRRRADPTDRGCSSNTGGNFLMAGVGLSF----------------LFSWFLMLLVLF 482 (806)
T ss_pred ---------HHHHHHHHHHhhccCCCCCCCcccCCCCCccHHHHHHHHHHHH----------------HHHHHHHHHHHH
Q ss_pred HHH
Q 017961 250 MLL 252 (363)
Q Consensus 250 q~l 252 (363)
-|+
T Consensus 483 ~Fl 485 (806)
T PF05478_consen 483 YFL 485 (806)
T ss_pred HHH
No 51
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=33.61 E-value=3.4e+02 Score=25.46 Aligned_cols=24 Identities=21% Similarity=0.420 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhh
Q 017961 171 PVQLYQAWLLFLYTGLALRENILR 194 (363)
Q Consensus 171 ~~~~~~flLvwyYcTLtiREsIL~ 194 (363)
.++.+..+++|-+.-+.|=|+|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~iid~~~l 122 (170)
T PF11241_consen 99 QVQLYVTLAMYVLLLLVIIDGVIL 122 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777787888888777643
No 52
>PRK09039 hypothetical protein; Validated
Probab=33.39 E-value=2.6e+02 Score=28.31 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 17 ERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 17 ~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
++.|.+.+..-+....-+.+-+.|.++|+..+..+...|.-.+
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555567777777777777777777666544
No 53
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=33.35 E-value=1.7e+02 Score=29.96 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhhccccchhccCCCCCCCccceeecccceeeeccccccccchhhhhhhHHHHH
Q 017961 83 QLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTA 145 (363)
Q Consensus 83 ~l~~~i~~~~~~~~~~dme~~LP~k~nG~yL~l~LG~vNvtll~k~~kf~yKdEYEkFKl~~t 145 (363)
++++.+.+++..+..-+.++.+.+ -.+|||++.......=+.-...++..+.
T Consensus 67 ~~~~~~~~~~~~l~~~~~~~~l~~-----------e~~d~t~p~~~~~~G~~HPl~~~~~~Ir 118 (339)
T PRK00488 67 AIEAALEERKEELEAAALNARLAA-----------ETIDVTLPGRRIELGSLHPITQTIEEIE 118 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh-----------ccccccCCCCCCCCCCCCHHHHHHHHHH
Confidence 355666666666653333333321 1267777664444444556666666653
No 54
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=33.14 E-value=86 Score=34.92 Aligned_cols=31 Identities=10% Similarity=0.208 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 017961 27 QEAAATLINRTSSEEQSLRQRALSLDSNIRR 57 (363)
Q Consensus 27 Q~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr 57 (363)
...+.+.++..++|-|.|+.|+..|...-++
T Consensus 455 Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~ 485 (697)
T PF09726_consen 455 ERSLKSELSQLRQENEQLQNKLQNLVQARQQ 485 (697)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555443
No 55
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=32.88 E-value=1.8e+02 Score=30.13 Aligned_cols=65 Identities=14% Similarity=0.232 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--hhh--hHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHHHHHHHHHHh
Q 017961 17 ERVVEEAKELQEAAATLINRT--SSE--EQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEEDLQKAQ 92 (363)
Q Consensus 17 ~~klee~~~LQ~~~~s~i~rq--~~e--~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~~~l~~~i~~~~ 92 (363)
...++++++-++.+++.|..- .++ .++|+.++++++..|+.++.++ ..+++++.+.+.+..
T Consensus 43 ~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~lP 107 (418)
T TIGR00414 43 LSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAAL---------------KALEAELQDKLLSIP 107 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhCC
Confidence 334555566666677766541 222 3567777777777666655222 222224555666666
Q ss_pred hhcc
Q 017961 93 CLIY 96 (363)
Q Consensus 93 ~~~~ 96 (363)
|...
T Consensus 108 N~~~ 111 (418)
T TIGR00414 108 NIPH 111 (418)
T ss_pred CCCC
Confidence 6665
No 56
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=32.74 E-value=4.5e+02 Score=27.89 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 9 EKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 9 ~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
-+.+.+.+.+..+++.++++.+...|.-...|.-.|-+++.+|...|.+.+
T Consensus 148 a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~~ 198 (507)
T PRK07739 148 AQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIAKVE 198 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778888899999999999999999999999999999999988887754
No 57
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=32.71 E-value=1.4e+02 Score=23.29 Aligned_cols=39 Identities=13% Similarity=0.337 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 017961 14 EEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIR 56 (363)
Q Consensus 14 ~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lk 56 (363)
+.+...++++.+||....+.... + ..+++++..+...++
T Consensus 17 ~~i~~~~~~l~~l~~~~l~~~~~---d-~~~~~el~~l~~~i~ 55 (103)
T PF00804_consen 17 DKIKEKLNELRKLHKKILSSPDQ---D-SELKRELDELTDEIK 55 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSH---H-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCc---c-hhHHHHHHHHHHHHH
Confidence 45566666666666666555541 1 344444444444443
No 58
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=32.41 E-value=3e+02 Score=24.68 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHHHHHHHHHHhhh
Q 017961 15 EVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEEDLQKAQCL 94 (363)
Q Consensus 15 e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~~~l~~~i~~~~~~ 94 (363)
|+-+.++|+.+.=-.+.+.+. .+.+++.+..+...|-.+...++...+.+ ...+..+.++ ++++.|.+....
T Consensus 27 e~~G~lDEl~a~igla~~~~~-----~~~~~~~L~~iq~~L~~l~~~la~~~~~~--~~~i~~~~v~-~Le~~i~~~~~~ 98 (163)
T PF01923_consen 27 EAYGTLDELNAFIGLARSEIK-----EEELREILERIQNELFDLGAELATPEEDE--EPEITEEDVQ-ELEEEIDEYSEE 98 (163)
T ss_dssp HHHHHHHHHHHHHHHHHTHCT-----THHHHHHHHHHHHHHHHHHHHHHTTTTSS--SCS--HHHHH-HHHHHHHHHHHH
T ss_pred eeeeeHHHHHHHHHHHHHHcC-----chhHHHHHHHHHHHHHHHHHHHcCCCccc--ccccCHHHHH-HHHHHHHHHHhc
Confidence 566788999888888888874 22344456666666666665555532111 1235556666 577777776655
Q ss_pred c
Q 017961 95 I 95 (363)
Q Consensus 95 ~ 95 (363)
.
T Consensus 99 ~ 99 (163)
T PF01923_consen 99 L 99 (163)
T ss_dssp S
T ss_pred C
Confidence 4
No 59
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=31.92 E-value=1e+02 Score=23.16 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 017961 20 VEEAKELQEAAATLINRTSSEEQSLRQRALSLDSN 54 (363)
Q Consensus 20 lee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~ 54 (363)
.|.+-+.|+...+.+.+-....+++.+|+..|...
T Consensus 11 CEslv~FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 11 CESLVAFQNKVTSALQSLTQKLDAVSKRLEALENR 45 (47)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556677777777777666566666777766554
No 60
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=31.89 E-value=1.4e+02 Score=23.32 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=17.7
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 31 ATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 31 ~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
++.++-.++|-+.+++.+..++.+++++.
T Consensus 13 ~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 13 ESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666543
No 61
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.45 E-value=3.5e+02 Score=25.70 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 017961 42 QSLRQRALSLDSNIR 56 (363)
Q Consensus 42 ~~l~~rl~~L~~~lk 56 (363)
..+++++.+.++.+.
T Consensus 121 ~~l~~~~~~~~~~~~ 135 (206)
T PRK10884 121 AEMQQKVAQSDSVIN 135 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 62
>KOG1341 consensus Na+/K+ transporter [Inorganic ion transport and metabolism]
Probab=30.78 E-value=1.4e+02 Score=33.71 Aligned_cols=44 Identities=30% Similarity=0.568 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHh-hhhhhc
Q 017961 175 YQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLM-ALVSLT 220 (363)
Q Consensus 175 ~~flLvwyYcTLtiREsIL~vNGSrIkgWWv~HHY~S~~l-sgv~Lt 220 (363)
|-.+++|-|..-|=||=| +.+|-+ +|||-+---.|+|- .|..||
T Consensus 479 fV~llv~i~t~k~~~eVv-~~~gis-p~ww~~FTs~S~F~nlGfslt 523 (854)
T KOG1341|consen 479 FVTLLVFIYTAKTSREVV-RSKGIS-PGWWAFFTSMSAFNNLGFSLT 523 (854)
T ss_pred HHHHHHHhhcchhhhhhc-ccCCCC-cchhhhhhHHHHHhccCcccC
Confidence 556799999999999954 555543 68998887777764 344454
No 63
>PF00880 Nebulin: Nebulin repeat; InterPro: IPR000900 Nebulin is a 600-800kDa protein found in the thin filaments of striated vertebrate muscle. It is presumed to play a role in binding and stabilising F-actin [], essentially by providing a template for actin polymerisation (i.e., acting as an "actin zipper"). The amino acid sequence shows a uniform repeating pattern along its length, a repeated 35-residue motif constituting up to 97% of the polypeptide. Analysis of individual repeats reveals a progressive N- to C-terminal divergence, coupled with an increasing alpha-helix propensity. This correlates with a higher binding affinity for F-actin at the C terminus. Thus, it is postulated that once the repeats have formed an initiation complex, the whole length of the nebulin molecule may then associate in a highly co-operative process with the thin filament, in a manner similar to the closing of a zipper [].
Probab=30.54 E-value=17 Score=23.64 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=11.0
Q ss_pred ccccchhhhhhhH
Q 017961 129 VQLKVKEEYNSYR 141 (363)
Q Consensus 129 ~kf~yKdEYEkFK 141 (363)
+..+||++||+.|
T Consensus 16 Sd~~Yk~~~ek~k 28 (29)
T PF00880_consen 16 SDVKYKEDYEKSK 28 (29)
T ss_pred HHHHHHHHHHHcc
Confidence 4678999999976
No 64
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=30.40 E-value=4.3e+02 Score=24.17 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=33.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 017961 4 KRSNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALS 50 (363)
Q Consensus 4 ~~~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~ 50 (363)
+|++--++-.++++..-+++.+++......+...+.|.+.+.+..+.
T Consensus 62 ~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ 108 (181)
T PRK13454 62 ERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRA 108 (181)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554555567777788888888888888888887777776666643
No 65
>PLN02372 violaxanthin de-epoxidase
Probab=30.33 E-value=2.6e+02 Score=29.92 Aligned_cols=46 Identities=22% Similarity=0.311 Sum_probs=28.3
Q ss_pred hhHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 017961 8 CEKVEEEE----VERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRL 58 (363)
Q Consensus 8 ~~~~~~~e----~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~ 58 (363)
-|+.|..| .+++-+|++++.+...+...++ +|.+.+++|++.....
T Consensus 373 ~e~~i~~e~~~~~~e~~~~v~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~f 422 (455)
T PLN02372 373 GEKTIVKEARQIEEELEKEVEKLGKEEESLFKRV-----ALEEGLKELEQDEENF 422 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 35666666 3444445666777777777763 5666777776665543
No 66
>PRK10884 SH3 domain-containing protein; Provisional
Probab=30.25 E-value=2.9e+02 Score=26.30 Aligned_cols=8 Identities=25% Similarity=0.459 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 017961 51 LDSNIRRL 58 (363)
Q Consensus 51 L~~~lkr~ 58 (363)
|++.-+++
T Consensus 137 L~~~n~~L 144 (206)
T PRK10884 137 LKEENQKL 144 (206)
T ss_pred HHHHHHHH
Confidence 33333333
No 67
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=30.23 E-value=4.6e+02 Score=25.14 Aligned_cols=56 Identities=13% Similarity=0.232 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 017961 9 EKVEEEEVERVVEEAKELQEAAATLINR------------TSSEEQSLRQRALSLDSNIRRLRSLLHS 64 (363)
Q Consensus 9 ~~~~~~e~~~klee~~~LQ~~~~s~i~r------------q~~e~~~l~~rl~~L~~~lkr~k~~l~~ 64 (363)
+..+.+++...-|.+.+||+.|+.-=+- ...+.++|++.++.....|+..+.....
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~ 148 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNH 148 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455667777777788888888753222 2234455666666666666666543333
No 68
>PF08919 F_actin_bind: F-actin binding; InterPro: IPR015015 The F-actin binding domain forms a compact bundle of four antiparallel alpha-helices, which are arranged in a left-handed topology. Binding of F-actin to the F-actin binding domain may result in cytoplasmic retention and subcellular distribution of the protein, as well as possible inhibition of protein function []. ; GO: 0004715 non-membrane spanning protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1ZZP_A 2KK1_A.
Probab=29.42 E-value=3.8e+02 Score=23.35 Aligned_cols=73 Identities=16% Similarity=0.298 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHHHHHH
Q 017961 13 EEEVERVVEEAKELQEAAATLIN-----RTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEED 87 (363)
Q Consensus 13 ~~e~~~klee~~~LQ~~~~s~i~-----rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~~~l~~~ 87 (363)
.+.|-+++|....|++.|+.|.. |-+= +-|+.+.-|+...+.++..-..-..++ ..+... ++...
T Consensus 31 ~~~~~qL~D~~~~l~~~C~~yaD~~~~p~~KF---~FREllsrLE~~~rqLr~~~s~~~~~~------~~~l~~-~l~~~ 100 (110)
T PF08919_consen 31 MAQWSQLSDKLQQLHSSCSGYADSIIQPHAKF---AFRELLSRLESQSRQLRSCGSSNSSPE------NQRLVS-DLQNT 100 (110)
T ss_dssp ---HHHHHHHHHHHHHHHHHHGGG-S-CCCHH---HHHHHHHHHHHHHHHHCHSSSSSSSTT--------THHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcCcchhh---hHHHHHHHHHHHHHHHHhccCCCCCcc------cHHHHH-HHHHH
Confidence 56788999999999999999998 2111 235567777777776653222211112 123344 57777
Q ss_pred HHHHhhhc
Q 017961 88 LQKAQCLI 95 (363)
Q Consensus 88 i~~~~~~~ 95 (363)
|++.-+++
T Consensus 101 ikeI~~~V 108 (110)
T PF08919_consen 101 IKEISNIV 108 (110)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77765544
No 69
>PLN02678 seryl-tRNA synthetase
Probab=28.81 E-value=2.2e+02 Score=30.13 Aligned_cols=41 Identities=7% Similarity=0.076 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHh---hhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 19 VVEEAKELQEAAATLIN---RTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 19 klee~~~LQ~~~~s~i~---rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
.+|++++-++..++.|. +...+.++|..+++.|+..|+.++
T Consensus 48 ~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le 91 (448)
T PLN02678 48 ELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKE 91 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555553 222334455555555555555443
No 70
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=28.65 E-value=2e+02 Score=28.33 Aligned_cols=57 Identities=28% Similarity=0.517 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc---------CCCCcchHH-----HHHHH------HHHHHHHHHHh---------hhhhhc
Q 017961 145 ALLFLLFPSTLLILRSWIWD---------GCLPAFPVQ-----LYQAW------LLFLYTGLALR---------ENILRI 195 (363)
Q Consensus 145 t~i~ll~~~~ll~~~~~~~~---------~~~~~~~~~-----~~~fl------LvwyYcTLtiR---------EsIL~v 195 (363)
..+.+.+|++...++..+.. ||.+..... ++..| ..-+||.||+| +.+|..
T Consensus 108 ~~i~~g~Pil~m~l~yivQ~~Rf~I~e~~GC~~~~~~s~~~~~l~~iwp~i~~lia~vYa~lt~~~f~~rr~~f~~~l~~ 187 (283)
T PF02076_consen 108 LLICFGIPILQMALHYIVQGHRFDIVEDVGCYPAIYPSWPTIFLFIIWPPIFSLIAAVYAILTLRRFIRRRKQFRDILSS 187 (283)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeEecccCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45778888877666655432 676543211 11111 12399999998 455666
Q ss_pred CCCCCc
Q 017961 196 NGSDIR 201 (363)
Q Consensus 196 NGSrIk 201 (363)
++|.+.
T Consensus 188 s~s~l~ 193 (283)
T PF02076_consen 188 SNSGLN 193 (283)
T ss_pred CCCccc
Confidence 655554
No 71
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.61 E-value=3.4e+02 Score=27.29 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=5.8
Q ss_pred HHHHHHHHhhhc
Q 017961 84 LEEDLQKAQCLI 95 (363)
Q Consensus 84 l~~~i~~~~~~~ 95 (363)
+.++|.+++...
T Consensus 251 ~~~~I~~ae~~~ 262 (312)
T smart00787 251 LNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHH
Confidence 445555554433
No 72
>PRK00846 hypothetical protein; Provisional
Probab=28.60 E-value=3.3e+02 Score=22.38 Aligned_cols=32 Identities=9% Similarity=0.066 Sum_probs=20.9
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 017961 29 AAATLINRTSSEEQSLRQRALSLDSNIRRLRS 60 (363)
Q Consensus 29 ~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~ 60 (363)
.-..-+.+|..+.+.|+.+++.|...|+....
T Consensus 31 ~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 31 ELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445566667777777777777777776653
No 73
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.51 E-value=3.4e+02 Score=25.80 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=5.4
Q ss_pred HHHHHHHHHH
Q 017961 179 LLFLYTGLAL 188 (363)
Q Consensus 179 LvwyYcTLti 188 (363)
+.+||-|+.=
T Consensus 192 ~~l~~~t~Dg 201 (251)
T PF11932_consen 192 VALYYQTLDG 201 (251)
T ss_pred hhheeECCCc
Confidence 4556666533
No 74
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=27.90 E-value=2e+02 Score=28.88 Aligned_cols=47 Identities=17% Similarity=0.317 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 13 EEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 13 ~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
+|-+.|.++.+..|++.+..--+|.......-++|+..+...+..|+
T Consensus 17 eEti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~q 63 (297)
T PF11945_consen 17 EETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQ 63 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777778877777777777767777778887777777766
No 75
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=27.43 E-value=3.7e+02 Score=31.79 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=16.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhhhcc
Q 017961 69 TNNLLRFDSKLADKQLEEDLQKAQCLIY 96 (363)
Q Consensus 69 e~~~~~~~~~~~~~~l~~~i~~~~~~~~ 96 (363)
.++-+.++|.-.+ +-..|.++...+.
T Consensus 467 ~dkvs~FG~~m~~--lL~~I~r~~~~f~ 492 (1074)
T KOG0250|consen 467 TDKVSAFGPNMPQ--LLRAIERRKRRFQ 492 (1074)
T ss_pred cchhhhcchhhHH--HHHHHHHHHhcCC
Confidence 3444556755554 6677777777764
No 76
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=27.35 E-value=2.7e+02 Score=28.37 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 017961 12 EEEEVERVVEEAKELQEAAATLIN 35 (363)
Q Consensus 12 ~~~e~~~klee~~~LQ~~~~s~i~ 35 (363)
+.+|.+++.|++...|...++..+
T Consensus 218 LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 218 LSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 77
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=27.28 E-value=50 Score=26.39 Aligned_cols=21 Identities=29% Similarity=1.094 Sum_probs=16.4
Q ss_pred CchhH-HHHHHHHHHhhhhhhc
Q 017961 200 IRPWW-IYHHYCAMLMALVSLT 220 (363)
Q Consensus 200 IkgWW-v~HHY~S~~lsgv~Lt 220 (363)
-|||| ++..|++.++..|...
T Consensus 20 lkPWwdvf~~YL~~~mlmi~v~ 41 (65)
T PF12534_consen 20 LKPWWDVFFDYLVLLMLMIFVF 41 (65)
T ss_pred HccHHHHHHHHHHHHHHHHHHH
Confidence 48999 6788998888777654
No 78
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=27.09 E-value=3e+02 Score=25.42 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=14.4
Q ss_pred HHHHHHHHhhhcc--ccchhccCC
Q 017961 84 LEEDLQKAQCLIY--DGDASAFLP 105 (363)
Q Consensus 84 l~~~i~~~~~~~~--~~dme~~LP 105 (363)
.++++++++..+. +..+...||
T Consensus 154 ae~~l~~a~~~y~~lN~~Lk~eLP 177 (216)
T cd07599 154 LERKLEEAKEEYEALNELLKSELP 177 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6778888877775 234455566
No 79
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=26.80 E-value=1.7e+02 Score=31.61 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=50.3
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhHHHHHHHH
Q 017961 286 QLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQT 343 (363)
Q Consensus 286 gLtfLlPfLf~g~~fQlYna~~L~~~~~~~~~~EWQV~~~~llf~il~~GNf~TTl~v 343 (363)
....++|=.++.-+-+++.+.+..+..+...-.+-+-.+-|+-++.+|+||++.++-+
T Consensus 457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv 514 (571)
T KOG1237|consen 457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLV 514 (571)
T ss_pred eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999988755556788999999999999999988766
No 80
>PLN02320 seryl-tRNA synthetase
Probab=26.80 E-value=2.5e+02 Score=30.38 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHh
Q 017961 20 VEEAKELQEAAATLINR--TSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 20 lee~~~LQ~~~~s~i~r--q~~e~~~l~~rl~~L~~~lkr~k 59 (363)
+|++++-++..++.|.. ...+.++|..++++++..|+.++
T Consensus 109 ~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le 150 (502)
T PLN02320 109 VERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLE 150 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555543 12234455556666655555544
No 81
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=26.65 E-value=2.3e+02 Score=27.30 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=43.7
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 2 DEKRSNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 2 ~~~~~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
.|+|.-++++..+|-+.+.+++..+++.+...-.. ..+...|...++-+..-|.++.
T Consensus 113 AE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~e-n~~L~elae~~~~la~~ie~l~ 169 (200)
T PF07412_consen 113 AEERRKALEEALEENEKLHKEIEQKDEEIAKLKEE-NEELKELAEHVQYLAEVIERLT 169 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 46788889999999998889999888887655433 5566677777888888887764
No 82
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=26.30 E-value=2.3e+02 Score=30.10 Aligned_cols=90 Identities=14% Similarity=0.295 Sum_probs=51.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhhhhhHHHHHHHHHHHHHHHHHhhhcccccc----------
Q 017961 6 SNCEKVEEEEVERVVEEAKELQEAAATLI--------NRTSSEEQSLRQRALSLDSNIRRLRSLLHSSIS---------- 67 (363)
Q Consensus 6 ~~~~~~~~~e~~~klee~~~LQ~~~~s~i--------~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~---------- 67 (363)
++|-+.+.++...++..+.+|||..-..= .=-.+..+++.+.+....+.|++++.-+...-|
T Consensus 209 e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL 288 (426)
T smart00806 209 ESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAEL 288 (426)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHH
Confidence 46788999999999999999998764321 111122334444444444444444333222110
Q ss_pred ----ccccccccChHHHHHHHHHHHHHHhhhcc
Q 017961 68 ----STNNLLRFDSKLADKQLEEDLQKAQCLIY 96 (363)
Q Consensus 68 ----~e~~~~~~~~~~~~~~l~~~i~~~~~~~~ 96 (363)
+|..-+.+..+++. +|++|++.+...|.
T Consensus 289 ~~VcEEqqfL~lQedL~~-DL~dDL~ka~eTf~ 320 (426)
T smart00806 289 DKVCEEQQFLTLQEDLIA-DLKEDLEKAEETFD 320 (426)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 12222333445566 48999999988775
No 83
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=26.19 E-value=1.6e+02 Score=32.10 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=42.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 4 KRSNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 4 ~~~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
.|+-+|+++..|+.+-.+-+..|...|..-... +.-.+.|++.+..|.....|.-
T Consensus 221 ~RdlaEeNl~kEi~~~~~~l~~l~~lc~~d~e~-~e~~~kl~~~l~~l~~~~~rvs 275 (538)
T PF05781_consen 221 SRDLAEENLKKEIENCLKLLESLAPLCWEDNES-REIIQKLQKSLDVLHQCATRVS 275 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999864333 3345677777777777776653
No 84
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=26.04 E-value=83 Score=28.21 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=29.9
Q ss_pred ccCCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017961 313 LVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFK 351 (363)
Q Consensus 313 ~~~~~~EWQV~~~~llf~il~~GNf~TTl~vv~~K~~~~ 351 (363)
+.++...|-..++++.|+++.+|=|+-...+..++-|++
T Consensus 28 R~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~ 66 (125)
T PF15048_consen 28 RVEDATPWNYSILALSFVVLVISFFLLGRSIQANRNRKM 66 (125)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHHHHHHHhHhcccccc
Confidence 456667899999999999999998777776665544433
No 85
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=26.01 E-value=3.4e+02 Score=21.65 Aligned_cols=79 Identities=10% Similarity=0.208 Sum_probs=0.0
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHH
Q 017961 1 MDEKRSNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLA 80 (363)
Q Consensus 1 ~~~~~~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~ 80 (363)
+.+..+.+...|.++..+..+-+.+-.+...+-+.+...+ +...+...++++...+..
T Consensus 33 l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~------~~~~l~~q~~~l~~~l~~---------------- 90 (127)
T smart00502 33 VEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKEN------KLKVLEQQLESLTQKQEK---------------- 90 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH----------------
Q ss_pred HHHHHHHHHHHhhhccccchhccC
Q 017961 81 DKQLEEDLQKAQCLIYDGDASAFL 104 (363)
Q Consensus 81 ~~~l~~~i~~~~~~~~~~dme~~L 104 (363)
+..-+...+..+..||--.+|
T Consensus 91 ---l~~~~~~~e~~l~~~~~~e~L 111 (127)
T smart00502 91 ---LSHAINFTEEALNSGDPTELL 111 (127)
T ss_pred ---HHHHHHHHHHHHHcCCChHHH
No 86
>smart00150 SPEC Spectrin repeats.
Probab=26.00 E-value=2.9e+02 Score=20.72 Aligned_cols=7 Identities=14% Similarity=0.411 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 017961 20 VEEAKEL 26 (363)
Q Consensus 20 lee~~~L 26 (363)
+++.+.+
T Consensus 37 ~~~~~~~ 43 (101)
T smart00150 37 LKKHEAL 43 (101)
T ss_pred HHHHHHH
Confidence 3333333
No 87
>PHA02562 46 endonuclease subunit; Provisional
Probab=25.98 E-value=3.7e+02 Score=27.90 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 017961 45 RQRALSLDSNIRRL 58 (363)
Q Consensus 45 ~~rl~~L~~~lkr~ 58 (363)
++++.++...++.+
T Consensus 336 ~~~i~el~~~i~~~ 349 (562)
T PHA02562 336 SKKLLELKNKISTN 349 (562)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 88
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=25.90 E-value=4e+02 Score=25.30 Aligned_cols=16 Identities=6% Similarity=0.374 Sum_probs=7.2
Q ss_pred HHHHhhhhhhcCCCCC
Q 017961 185 GLALRENILRINGSDI 200 (363)
Q Consensus 185 TLtiREsIL~vNGSrI 200 (363)
|+...+-.+-+||+.+
T Consensus 167 ~i~~~~~~i~~dG~~~ 182 (251)
T PF11932_consen 167 TIEVYQGTITLDGEER 182 (251)
T ss_pred ceeEEEEEEeECCeEE
Confidence 3333344444466544
No 89
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.28 E-value=2.6e+02 Score=30.43 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 017961 15 EVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRL 58 (363)
Q Consensus 15 e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~ 58 (363)
.++-..|++++||...++...|. +..|+|..+|++.|=|+
T Consensus 356 ri~~i~e~v~eLqk~~ad~~~KI----~~~k~r~~~Ls~RiLRv 395 (508)
T KOG3091|consen 356 RINAIGERVTELQKHHADAVAKI----EEAKNRHVELSHRILRV 395 (508)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34445566666666555555543 22455666666666555
No 90
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=25.25 E-value=5.9e+02 Score=24.09 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 017961 6 SNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRL 58 (363)
Q Consensus 6 ~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~ 58 (363)
++...++++++..+-+.+++|+.+...+..| ++.+..++..|...++..
T Consensus 140 E~ki~eLE~el~~~~~~lk~lE~~~~~~~~r----e~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 140 ESKIKELEEELKSVGNNLKSLEASEEKASER----EDEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhhHH----HHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777666665555 344555666666655544
No 91
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.13 E-value=3e+02 Score=30.37 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 017961 10 KVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHS 64 (363)
Q Consensus 10 ~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~ 64 (363)
..++.|+....+.+.-....+.....+++.|.+.|-+++..++.++..-.+.+.+
T Consensus 463 ~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~ 517 (581)
T KOG0995|consen 463 GEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEE 517 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445555555666666777777777777654433333
No 92
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=25.01 E-value=20 Score=33.25 Aligned_cols=15 Identities=47% Similarity=1.300 Sum_probs=13.3
Q ss_pred hhcCCCCCchhHHHH
Q 017961 193 LRINGSDIRPWWIYH 207 (363)
Q Consensus 193 L~vNGSrIkgWWv~H 207 (363)
++.|-|+||.||+.|
T Consensus 105 l~~d~~~~ke~w~~h 119 (161)
T COG5608 105 LRLDNSKIKEWWVTH 119 (161)
T ss_pred EEEehHHHHHHHHHH
Confidence 567899999999988
No 93
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.83 E-value=3.3e+02 Score=26.59 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=43.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHH
Q 017961 6 SNCEKVEEEEVERVVEEAKELQEAAATL--INRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQ 83 (363)
Q Consensus 6 ~~~~~~~~~e~~~klee~~~LQ~~~~s~--i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~~~ 83 (363)
++|-+++..+++..-.|+.+|+..-.+- -+......+.|+..+.-..-++.+++.-+..+ ++. .++|..++ +
T Consensus 128 ~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L---~N~--~l~~e~V~-~ 201 (233)
T PF04065_consen 128 KDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLL---DND--ELDPEQVE-D 201 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HcC--CCCHHHHH-H
Confidence 3555666666666666666666543321 11122334455555555556666655444443 233 37888888 4
Q ss_pred HHHHHHH
Q 017961 84 LEEDLQK 90 (363)
Q Consensus 84 l~~~i~~ 90 (363)
++++|+-
T Consensus 202 ikediey 208 (233)
T PF04065_consen 202 IKEDIEY 208 (233)
T ss_pred HHHHHHH
Confidence 7777654
No 94
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=24.73 E-value=3.4e+02 Score=29.35 Aligned_cols=18 Identities=6% Similarity=0.351 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 017961 42 QSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 42 ~~l~~rl~~L~~~lkr~k 59 (363)
+++.++++.+...+++|.
T Consensus 378 k~~e~k~~q~q~k~~k~~ 395 (493)
T KOG0804|consen 378 KIVERKLQQLQTKLKKCQ 395 (493)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 95
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=24.54 E-value=3.1e+02 Score=29.12 Aligned_cols=12 Identities=25% Similarity=0.194 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhh
Q 017961 25 ELQEAAATLINR 36 (363)
Q Consensus 25 ~LQ~~~~s~i~r 36 (363)
+||..|+..-..
T Consensus 335 klqaec~rQ~ql 346 (442)
T PF06637_consen 335 KLQAECARQTQL 346 (442)
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 96
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.18 E-value=6.4e+02 Score=24.15 Aligned_cols=96 Identities=24% Similarity=0.386 Sum_probs=51.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH---H---HHHHHHHHHHhhhccccccccccccccChHH
Q 017961 6 SNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQR---A---LSLDSNIRRLRSLLHSSISSTNNLLRFDSKL 79 (363)
Q Consensus 6 ~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~r---l---~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~ 79 (363)
++.-.++-+|.+++|+.+++-|+.+.-.-..++- ..+.+ . +-...+|+|+.+.+... +...
T Consensus 43 ~~LP~~Vr~e~er~L~~Lk~ql~~~~l~~k~rki---f~ryrkVRFFErkKaeR~irrLeK~~keS----------~ad~ 109 (199)
T KOG4484|consen 43 KDLPPEVREELERKLQDLKKQLDNHELLAKERKI---FKRYRKVRFFERKKAERSIRRLEKLIKES----------GADV 109 (199)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------ccch
Confidence 4555678899999999998888776533222110 11111 1 12234555655443321 1122
Q ss_pred HHHHHHHHHHHHhhhccccchhccCCCCCCCccceeeccc
Q 017961 80 ADKQLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGP 119 (363)
Q Consensus 80 ~~~~l~~~i~~~~~~~~~~dme~~LP~k~nG~yL~l~LG~ 119 (363)
-++++++++-.-+--+ .---+.|+ |-.|++|+-|.
T Consensus 110 kd~~i~~qlrk~kidL---~YVr~fPk--~eKYVsLy~~~ 144 (199)
T KOG4484|consen 110 KDKQIQQQLRKLKIDL---EYVRFFPK--NEKYVSLYPGG 144 (199)
T ss_pred hhHHHHHHHHHHHHHH---HHHHhcCC--ccceeeeccCC
Confidence 2333555554444333 22356784 89999999874
No 97
>PRK14140 heat shock protein GrpE; Provisional
Probab=24.17 E-value=1.3e+02 Score=28.37 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=15.7
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 29 AAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 29 ~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
++++.|+-...+.+.+++++.+++..+.|+.
T Consensus 34 ~~~~~~~~l~~~i~~l~~ei~elkd~~lR~~ 64 (191)
T PRK14140 34 SEAELLDEEQAKIAELEAKLDELEERYLRLQ 64 (191)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555556666665555544
No 98
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=23.89 E-value=4.2e+02 Score=27.42 Aligned_cols=53 Identities=26% Similarity=0.300 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 017961 10 KVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLL 62 (363)
Q Consensus 10 ~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l 62 (363)
++|++-++-.--.+.+|.+..+....|+...+.+|-..++.|-+.-++....+
T Consensus 237 ~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~l 289 (384)
T KOG0972|consen 237 KNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTL 289 (384)
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555455566777777777777777777777777777776666654333
No 99
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=23.71 E-value=2.7e+02 Score=24.72 Aligned_cols=36 Identities=36% Similarity=0.346 Sum_probs=23.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017961 3 EKRSNCEKVEEEEVERVVEEAKELQEAAATLINRTS 38 (363)
Q Consensus 3 ~~~~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~ 38 (363)
+-|.|-++...+.+.+.+++.+++++.+...+.+..
T Consensus 44 ~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~ 79 (126)
T PF09403_consen 44 EARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLK 79 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345555666667777777777777777776666643
No 100
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=23.38 E-value=4.5e+02 Score=28.45 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 017961 16 VERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIR 56 (363)
Q Consensus 16 ~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lk 56 (363)
+++++.+...=.++|.+-.+.++.+...|++........++
T Consensus 380 ~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~ 420 (493)
T KOG0804|consen 380 VERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLK 420 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33344444444444544444444444444444444433333
No 101
>PRK10093 primosomal replication protein N''; Provisional
Probab=23.34 E-value=3.7e+02 Score=25.29 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 017961 12 EEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHS 64 (363)
Q Consensus 12 ~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~ 64 (363)
=..||++-|-+...=.+.+-...+- -.+-+.+++.+..+...|.||+.++..
T Consensus 110 qHQd~ERRL~~Mv~dre~~L~~a~~-~~~qq~lq~el~alegRL~RCrqAl~~ 161 (171)
T PRK10093 110 QHQEFERRLLEMVAERRARLARATD-LVEQQTLHREVEAYEGRLARCRHALEK 161 (171)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456776666555444444333222 123456899999999999999954433
No 102
>PF10063 DUF2301: Uncharacterized integral membrane protein (DUF2301); InterPro: IPR019275 This family contains uncharacterised integral membrane proteins.
Probab=23.09 E-value=1.1e+02 Score=27.78 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=26.6
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHH--HHHHHHHHHh
Q 017961 286 QLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFC--GALLVLMAVG 335 (363)
Q Consensus 286 gLtfLlPfLf~g~~fQlYna~~L~~~~~~~~~~EWQV~~~--~llf~il~~G 335 (363)
++++++|.+.+||.+.+-+.-.. +...+ +++|+++++-
T Consensus 78 ~l~~llp~llLghl~g~~~~~~~------------~~ll~~~~~L~~i~A~r 117 (135)
T PF10063_consen 78 LLTFLLPLLLLGHLFGLLPASVE------------LALLGIWALLFLIFAIR 117 (135)
T ss_pred hHHHHHHHHHHHHHHCCCcHHHH------------HHHHHHHHHHHHHHHHH
Confidence 79999999999998875443332 23333 7788877753
No 103
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=22.98 E-value=2.5e+02 Score=24.96 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 017961 16 VERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRS 60 (363)
Q Consensus 16 ~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~ 60 (363)
++-|+|++-+|=+.+..+--| .|.+.|+..+.+|.....++++
T Consensus 46 IDNKIeQAMDLVKtHLmfAVR--EEVe~Lk~qI~eL~er~~~Le~ 88 (123)
T KOG4797|consen 46 IDNKIEQAMDLVKTHLMFAVR--EEVEVLKEQIRELEERNSALER 88 (123)
T ss_pred echHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999888877 5889999999999988887753
No 104
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.70 E-value=3.2e+02 Score=22.64 Aligned_cols=53 Identities=21% Similarity=0.379 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHH-----hhhhhh-hHHHHHHHHHHHHHHHHHhhhccc
Q 017961 12 EEEEVERVVEEAKELQE--AAATLI-----NRTSSE-EQSLRQRALSLDSNIRRLRSLLHS 64 (363)
Q Consensus 12 ~~~e~~~klee~~~LQ~--~~~s~i-----~rq~~e-~~~l~~rl~~L~~~lkr~k~~l~~ 64 (363)
-..|...+.+|+..|.+ .|-..| .+...| ...|.+++..+...++++.+++..
T Consensus 28 ~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~ 88 (105)
T cd00632 28 QLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEED 88 (105)
T ss_pred HHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777632 222222 222221 234666777777777776654444
No 105
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.69 E-value=6.7e+02 Score=25.13 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=14.7
Q ss_pred ceeecccceeeecccccc
Q 017961 113 VKMFIGPINVRASRKDVQ 130 (363)
Q Consensus 113 L~l~LG~vNvtll~k~~k 130 (363)
..++||.+-++++++++-
T Consensus 244 ~~i~lg~~~iaapsREda 261 (290)
T COG4026 244 VEILLGTVYIAAPSREDA 261 (290)
T ss_pred cceeeeeeeeecCchHHH
Confidence 458899999999988764
No 106
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=22.62 E-value=3.1e+02 Score=23.53 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 017961 21 EEAKELQEAAATLINRTSS 39 (363)
Q Consensus 21 ee~~~LQ~~~~s~i~rq~~ 39 (363)
|++.+|.+....-+++|++
T Consensus 72 EqL~~Lk~kl~~e~~~~~k 90 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRK 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655
No 107
>PLN02400 cellulose synthase
Probab=22.55 E-value=1.1e+02 Score=36.01 Aligned_cols=27 Identities=26% Similarity=0.573 Sum_probs=20.2
Q ss_pred HHHHHHHhhhhhhcCCCCCchhHHHHHHH
Q 017961 182 LYTGLALRENILRINGSDIRPWWIYHHYC 210 (363)
Q Consensus 182 yYcTLtiREsIL~vNGSrIkgWWv~HHY~ 210 (363)
-++..++=| ++.-|-.|+.||..+-++
T Consensus 905 ~~~~~~lLE--~~~sG~si~~WWrnQq~w 931 (1085)
T PLN02400 905 SIFATGILE--LRWSGVGIEDWWRNEQFW 931 (1085)
T ss_pred HHHHHHHHH--HhhcCccHHHhhhcccee
Confidence 455566677 555577899999998876
No 108
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=22.48 E-value=5.4e+02 Score=23.63 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhccc
Q 017961 40 EEQSLRQRALSLDSNIRRLRSLLHS 64 (363)
Q Consensus 40 e~~~l~~rl~~L~~~lkr~k~~l~~ 64 (363)
+-+.+++++..+...+.||+..+..
T Consensus 139 ~~~~lq~ei~a~e~RL~RCr~Ai~~ 163 (173)
T PF07445_consen 139 EQQQLQQEILALEQRLQRCRQAIEK 163 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356788999999999999844433
No 109
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=22.31 E-value=1.4e+02 Score=23.14 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 24 KELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 24 ~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
..+|++..+-........|.+..|+-+|.++|..+.
T Consensus 13 ~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~ 48 (54)
T PF06825_consen 13 QQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLM 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456666666666666667888888888888887654
No 110
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.17 E-value=5.8e+02 Score=25.72 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHh
Q 017961 39 SEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 39 ~e~~~l~~rl~~L~~~lkr~k 59 (363)
.|...++.+++..+..+...+
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~ 224 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKV 224 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554433
No 111
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.14 E-value=2.7e+02 Score=25.28 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 017961 44 LRQRALSLDSNIR 56 (363)
Q Consensus 44 l~~rl~~L~~~lk 56 (363)
+.+++++++..|+
T Consensus 159 ~~~ei~~lk~el~ 171 (192)
T PF05529_consen 159 LSEEIEKLKKELE 171 (192)
T ss_pred hHHHHHHHHHHHH
Confidence 3334444444433
No 112
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.84 E-value=6.1e+02 Score=25.94 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=12.1
Q ss_pred HHHHHHHHhhhccccchhccCC
Q 017961 84 LEEDLQKAQCLIYDGDASAFLP 105 (363)
Q Consensus 84 l~~~i~~~~~~~~~~dme~~LP 105 (363)
++.++...+..+. .|..+-|
T Consensus 180 ~esei~~Ik~lvl--n~~~f~~ 199 (300)
T KOG2629|consen 180 LESEINTIKQLVL--NMSNFAP 199 (300)
T ss_pred HHHHHHHHHHHHh--cccccCC
Confidence 6666666666665 5666653
No 113
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=21.72 E-value=4.4e+02 Score=21.31 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 017961 10 KVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIR 56 (363)
Q Consensus 10 ~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lk 56 (363)
+++.+|+.+..+++.+|-+..+..... +.+.+++++.+.-.+.+
T Consensus 1 e~l~~~l~~l~~d~~~l~~~~~~~~~~---~~~~~r~~~~~~~~~a~ 44 (94)
T PF05957_consen 1 EDLKAELEQLRADLEDLARSAADLAGE---KADEARDRAEEALDDAR 44 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHH
Confidence 356777777777777777666655444 34556666665555444
No 114
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=21.47 E-value=5.4e+02 Score=22.26 Aligned_cols=27 Identities=37% Similarity=0.345 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhccc
Q 017961 38 SSEEQSLRQRALSLDSNIRRLRSLLHS 64 (363)
Q Consensus 38 ~~e~~~l~~rl~~L~~~lkr~k~~l~~ 64 (363)
....++++..+..|..+.+|+++.+..
T Consensus 71 ~~~l~~v~~~v~~L~~s~~RL~~eV~~ 97 (132)
T PF10392_consen 71 ESVLQAVRSSVESLQSSYERLRSEVIE 97 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 335566677777777777777754444
No 115
>PLN02190 cellulose synthase-like protein
Probab=21.44 E-value=1.6e+02 Score=33.47 Aligned_cols=58 Identities=19% Similarity=0.357 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcchHH-HHHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHH
Q 017961 145 ALLFLLFPSTLLILRSWIWDGCLPAFPVQ-LYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHY 209 (363)
Q Consensus 145 t~i~ll~~~~ll~~~~~~~~~~~~~~~~~-~~~flLvwyYcTLtiREsIL~vNGSrIkgWWv~HHY 209 (363)
.+++++.|..+++....+ +|..+.- ++.+ +.-.||..++=|-..- |-.|++||..+-+
T Consensus 546 ~l~Y~~lP~l~Ll~g~~i----~P~~~~~~~~~~-l~~~~~~~~l~E~~~s--G~s~~~WWnnqr~ 604 (756)
T PLN02190 546 ELIYCLLPAYCLLHNSAL----FPKGVYLGIIVT-LVGMHCLYTLWEFMSL--GFSVQSWYVSQSF 604 (756)
T ss_pred HHHHHHHHHHHHHcCCcc----ccCccHHHHHHH-HHHHHHHHHHHHHHHc--CCcHHHHHhhhhe
Confidence 356666776666543322 2322111 1222 2224566677775543 6679999998853
No 116
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=21.12 E-value=3.5e+02 Score=27.75 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcccc
Q 017961 38 SSEEQSLRQRALSLDSNIRRLRSLLHSS 65 (363)
Q Consensus 38 ~~e~~~l~~rl~~L~~~lkr~k~~l~~~ 65 (363)
+.|.|.+.+|+.+|+..++++++.+..+
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l 315 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDL 315 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577777777777777777776555553
No 117
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=21.11 E-value=7.3e+02 Score=27.52 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=35.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccc
Q 017961 5 RSNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSI 66 (363)
Q Consensus 5 ~~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~ 66 (363)
|+..-+.+.+|....=+...++.+.+. ..+.|.+....++.+|..+|..++.++....
T Consensus 13 rd~ya~~lk~e~a~~qqr~~qmseev~----~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 13 RDQYAQQLKEESAQWQQRMQQMSEEVR----TLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 555555555565544444444444433 3445556667788888888888877766544
No 118
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=20.77 E-value=4.6e+02 Score=21.68 Aligned_cols=36 Identities=33% Similarity=0.495 Sum_probs=23.0
Q ss_pred CchhhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHhh
Q 017961 1 MDEKRSNCEKV--EEEEVERVVEEAKELQEAAATLINR 36 (363)
Q Consensus 1 ~~~~~~~~~~~--~~~e~~~klee~~~LQ~~~~s~i~r 36 (363)
|..+|.+++-+ -.++=+.+++++.+||+.-...++|
T Consensus 1 msp~~~~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~R 38 (80)
T PF10224_consen 1 MSPRRNSEDIEKLEKEEKEELIQEILELQDSLEALSDR 38 (80)
T ss_pred CCCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556554443 2233456788888899887777666
No 119
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.62 E-value=4e+02 Score=28.78 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 017961 19 VVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRR 57 (363)
Q Consensus 19 klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr 57 (363)
.+.|+++-+....+..+++++|-+.|++|-.+++..|..
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~ 105 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ 105 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 344555556666677788889999999999999998885
No 120
>PF14857 TMEM151: TMEM151 family
Probab=20.57 E-value=40 Score=35.56 Aligned_cols=33 Identities=21% Similarity=0.612 Sum_probs=27.1
Q ss_pred hhhhhhcCCCCCchhHHHHHHHHHHhhhhhhccc
Q 017961 189 RENILRINGSDIRPWWIYHHYCAMLMALVSLTWE 222 (363)
Q Consensus 189 REsIL~vNGSrIkgWWv~HHY~S~~lsgv~LtWp 222 (363)
+|+||......=.|||+. |+.=-+.|+.+|+||
T Consensus 236 ke~~la~~dp~~~Pwy~s-~~~fWlasillLSWP 268 (425)
T PF14857_consen 236 KEHMLAYVDPSRLPWYVS-MFVFWLASILLLSWP 268 (425)
T ss_pred ceeEEEEECCCCCCceec-HHHHHHHHHHHHhhH
Confidence 899999888888899875 556667788999996
No 121
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=20.27 E-value=1e+02 Score=31.25 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=27.4
Q ss_pred ccccccChHHHHHHHHHHHHHHhhhccccchhccCCCCCCC
Q 017961 70 NNLLRFDSKLADKQLEEDLQKAQCLIYDGDASAFLPSKAQG 110 (363)
Q Consensus 70 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~~dme~~LP~k~nG 110 (363)
++=-|..+.++=|+...+|+..+.++. .|.+.|-.|..|
T Consensus 108 EECHRVEAQLALKEARkEIkQLkQvie--TmrssL~ekDkG 146 (305)
T PF15290_consen 108 EECHRVEAQLALKEARKEIKQLKQVIE--TMRSSLAEKDKG 146 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhchhhhh
Confidence 333466677777778888888888887 777777655444
No 122
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=20.25 E-value=3.1e+02 Score=20.70 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=14.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhccc
Q 017961 38 SSEEQSLRQRALSLDSNIRRLRSLLHS 64 (363)
Q Consensus 38 ~~e~~~l~~rl~~L~~~lkr~k~~l~~ 64 (363)
+.|...|++++..++.....++..+..
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544444
No 123
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=20.25 E-value=4.1e+02 Score=20.47 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhcccc
Q 017961 12 EEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSS 65 (363)
Q Consensus 12 ~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~ 65 (363)
+.+++.++++.+..+.. -.| +.........+.+....|+.+.-.+.++
T Consensus 4 l~~~i~~~l~~~~~~~~-----~~r-~~~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 4 LTAEIKSKLERIKNLSG-----EQR-KSLIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHGGGS-C-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHhhccCh-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45566666666654432 011 1222333445555555555554444443
No 124
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=20.16 E-value=5.3e+02 Score=27.57 Aligned_cols=89 Identities=15% Similarity=0.238 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH--------HHHhhh----hhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccC
Q 017961 9 EKVEEEEVERVVEEAKELQEAAA--------TLINRT----SSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFD 76 (363)
Q Consensus 9 ~~~~~~e~~~klee~~~LQ~~~~--------s~i~rq----~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~ 76 (363)
...+.+-++.+.+++.++++.+. +|+... ..+.|.|=.++-+|..-+..++++.... -.|..
T Consensus 175 ~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~R------gVRp~ 248 (426)
T smart00806 175 FTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQR------GVRPS 248 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCCC
Confidence 45566666667777777766422 233332 3445556666666666666666554432 12345
Q ss_pred hHHHHHHHHHHHHHHhhhccccchhccCCC
Q 017961 77 SKLADKQLEEDLQKAQCLIYDGDASAFLPS 106 (363)
Q Consensus 77 ~~~~~~~l~~~i~~~~~~~~~~dme~~LP~ 106 (363)
|+..+ .+.++|..++.-+. +|+.|+..
T Consensus 249 ~~qLe-~v~kdi~~a~keL~--~m~~~i~~ 275 (426)
T smart00806 249 KKQLE-TVQKELETARKELK--KMEEYIDI 275 (426)
T ss_pred HHHHH-HHHHHHHHHHHHHH--HHHHHHhh
Confidence 56666 58899999999998 89999975
No 125
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.15 E-value=8.2e+02 Score=25.66 Aligned_cols=12 Identities=17% Similarity=0.027 Sum_probs=5.3
Q ss_pred ccchhhhhhhHH
Q 017961 131 LKVKEEYNSYRD 142 (363)
Q Consensus 131 f~yKdEYEkFKl 142 (363)
+-||.+-|-+-+
T Consensus 300 ~l~kq~l~~~A~ 311 (365)
T KOG2391|consen 300 PLYKQILECYAL 311 (365)
T ss_pred hHHHHHHHhhhh
Confidence 344554444433
Done!