Query 017961
Match_columns 363
No_of_seqs 106 out of 133
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 07:41:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gmj_A ATPase inhibitor; coile 62.0 38 0.0013 27.3 7.9 43 17-59 36-78 (84)
2 3swf_A CGMP-gated cation chann 54.8 49 0.0017 26.1 7.3 51 10-60 3-53 (74)
3 1wlq_A Geminin; coiled-coil; 2 53.5 52 0.0018 26.4 7.4 54 3-57 27-80 (83)
4 3oja_B Anopheles plasmodium-re 51.3 45 0.0015 33.0 8.3 20 84-105 563-582 (597)
5 3okq_A BUD site selection prot 49.7 64 0.0022 28.2 8.0 89 6-96 13-124 (141)
6 2zxx_A Geminin; coiled-coil, c 49.4 64 0.0022 25.6 7.3 55 2-57 22-76 (79)
7 1ses_A Seryl-tRNA synthetase; 49.1 40 0.0014 33.3 7.5 45 15-59 39-84 (421)
8 3trt_A Vimentin; cytoskeleton, 49.0 81 0.0028 23.6 7.9 24 16-39 33-56 (77)
9 2w83_C C-JUN-amino-terminal ki 47.6 35 0.0012 27.2 5.4 21 40-60 45-65 (77)
10 3oja_B Anopheles plasmodium-re 44.9 1E+02 0.0035 30.4 9.7 13 84-96 570-582 (597)
11 2wvr_A Geminin; DNA replicatio 44.3 74 0.0025 29.4 7.9 57 2-59 103-159 (209)
12 3mq9_A Bone marrow stromal ant 42.2 57 0.0019 31.5 7.3 20 7-26 373-392 (471)
13 2dq0_A Seryl-tRNA synthetase; 38.3 74 0.0025 31.8 7.6 43 17-59 44-89 (455)
14 3etw_A Adhesin A; antiparallel 36.5 1.1E+02 0.0039 25.8 7.3 38 2-39 25-62 (119)
15 3swy_A Cyclic nucleotide-gated 35.8 1.2E+02 0.0041 21.7 6.8 42 12-53 3-44 (46)
16 3tnu_B Keratin, type II cytosk 35.4 34 0.0012 28.4 3.9 50 10-59 7-56 (129)
17 1m1j_C Fibrinogen gamma chain; 35.3 1.3E+02 0.0045 30.0 8.8 25 9-33 43-67 (409)
18 1szi_A TIP47, mannose-6-phosph 34.1 2.1E+02 0.0071 26.9 9.4 105 6-120 130-235 (247)
19 1wle_A Seryl-tRNA synthetase; 32.5 2.3E+02 0.008 28.8 10.2 42 18-59 84-136 (501)
20 3oa7_A Head morphogenesis prot 32.5 90 0.0031 28.8 6.5 46 4-60 27-72 (206)
21 3na7_A HP0958; flagellar bioge 31.8 1.8E+02 0.0062 26.4 8.5 20 158-177 196-215 (256)
22 4gkw_A Spindle assembly abnorm 29.9 1.7E+02 0.0058 25.7 7.5 70 17-95 45-114 (167)
23 3tnu_A Keratin, type I cytoske 29.9 32 0.0011 28.7 2.9 50 10-59 9-58 (131)
24 2efr_A General control protein 29.1 2.9E+02 0.0099 24.1 9.3 41 12-56 47-87 (155)
25 2avr_X Adhesion A; antiparalle 28.4 1.8E+02 0.006 24.7 7.1 37 2-38 25-61 (119)
26 3qne_A Seryl-tRNA synthetase, 27.1 2.6E+02 0.0088 28.5 9.4 41 19-59 48-91 (485)
27 2dq3_A Seryl-tRNA synthetase; 25.8 74 0.0025 31.4 5.1 41 19-59 45-88 (425)
28 1deq_A Fibrinogen (alpha chain 25.3 1.6E+02 0.0054 29.6 7.3 11 131-141 172-182 (390)
29 2efr_A General control protein 24.1 2.7E+02 0.0092 24.3 7.8 28 9-36 9-36 (155)
30 3ghg_A Fibrinogen alpha chain; 22.9 4E+02 0.014 27.9 9.9 20 42-61 134-153 (562)
31 3vkg_A Dynein heavy chain, cyt 22.4 2.6E+02 0.0088 35.1 9.6 81 3-95 1972-2072(3245)
32 3ghg_A Fibrinogen alpha chain; 22.1 1.3E+02 0.0044 31.5 6.1 46 9-61 119-164 (562)
33 4emc_A Monopolin complex subun 22.0 3.4E+02 0.012 24.7 8.2 45 15-63 21-65 (190)
34 1ez3_A Syntaxin-1A; three heli 21.5 2.3E+02 0.0079 22.3 6.5 38 16-57 24-61 (127)
35 1kdl_A YOPD protein; yersinia, 20.8 49 0.0017 21.3 1.7 16 244-259 3-18 (26)
36 3lss_A Seryl-tRNA synthetase; 20.5 3E+02 0.01 28.0 8.4 17 242-258 336-352 (484)
37 1t3j_A Mitofusin 1; coiled coi 20.0 3.6E+02 0.012 22.0 7.2 50 6-58 24-73 (96)
No 1
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=61.98 E-value=38 Score=27.29 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 17 ERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 17 ~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
.+--|++.+|.+....-|+++.+|.+.|.+.+...++.|+.++
T Consensus 36 qkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 36 ARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445677778888888888888877777777777777777665
No 2
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=54.83 E-value=49 Score=26.09 Aligned_cols=51 Identities=25% Similarity=0.272 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 017961 10 KVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRS 60 (363)
Q Consensus 10 ~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~ 60 (363)
+.++|-|.+.-..+..||.+-+..+.-...--..|++|+..|...++.+..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~ 53 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLID 53 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 346777787777888999999888777766667899999999999887653
No 3
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=53.54 E-value=52 Score=26.45 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=30.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 017961 3 EKRSNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRR 57 (363)
Q Consensus 3 ~~~~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr 57 (363)
|+|.-++.+..+|-+++.+++..+++..++.-.. ..+...|...++-+.+-|++
T Consensus 27 E~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~e-n~~L~elA~~~q~la~~i~~ 80 (83)
T 1wlq_A 27 EQRRKALYEALKENEKLHKEIEQKDSEIARLRKE-NKDLAEVAEHVQYMAEVIER 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777776654433322 33334444444444444433
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.34 E-value=45 Score=32.97 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=9.1
Q ss_pred HHHHHHHHhhhccccchhccCC
Q 017961 84 LEEDLQKAQCLIYDGDASAFLP 105 (363)
Q Consensus 84 l~~~i~~~~~~~~~~dme~~LP 105 (363)
+++++...+..+. +.+..++
T Consensus 563 l~~e~~~~~~~~~--~l~~~~~ 582 (597)
T 3oja_B 563 LRQETSLKRQKVK--QLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHH--HHHHTTC
T ss_pred HHHHHHHHHHHHH--HHHHHhc
Confidence 4444444444444 4445554
No 5
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=49.69 E-value=64 Score=28.17 Aligned_cols=89 Identities=16% Similarity=0.202 Sum_probs=54.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH---------------HHhhhhhhhHHHHHHHHHHHHHHHHHhhhcc-------
Q 017961 6 SNCEKVEEEEVERVVEEAKELQEAAAT---------------LINRTSSEEQSLRQRALSLDSNIRRLRSLLH------- 63 (363)
Q Consensus 6 ~~~~~~~~~e~~~klee~~~LQ~~~~s---------------~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~------- 63 (363)
++|-+.+.++...++..+.+|||..-. .+....++.+.+++.++.+...|++-++.=.
T Consensus 13 ~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL 92 (141)
T 3okq_A 13 EKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAEL 92 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHH
Confidence 567889999999999999999998653 2334445556666666666666665443211
Q ss_pred -ccccccccccccChHHHHHHHHHHHHHHhhhcc
Q 017961 64 -SSISSTNNLLRFDSKLADKQLEEDLQKAQCLIY 96 (363)
Q Consensus 64 -~~~~~e~~~~~~~~~~~~~~l~~~i~~~~~~~~ 96 (363)
..- .|..-..+..+++. +|++|++.+...|.
T Consensus 93 ~~Vc-eEQqfl~~QedL~~-DL~eDL~ka~etf~ 124 (141)
T 3okq_A 93 DKVC-EEQQFLTLQEELIL-DLKEDLGKALETFD 124 (141)
T ss_dssp HHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 100 12222223335555 48888888877775
No 6
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=49.44 E-value=64 Score=25.62 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=34.3
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 017961 2 DEKRSNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRR 57 (363)
Q Consensus 2 ~~~~~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr 57 (363)
.|+|..++.+..+|=+.+.+++..+++.+...-.. ..+...|.+.++.+...|++
T Consensus 22 AE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeE-N~~L~el~~~~~~laevl~~ 76 (79)
T 2zxx_A 22 AEQRRKALYEALKENEKLHKEIEQKDSEIARLRKE-NKDLAEVAEHVQYMAEVIER 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888888887776433222 33334445555555555444
No 7
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=49.14 E-value=40 Score=33.32 Aligned_cols=45 Identities=20% Similarity=0.377 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHHh
Q 017961 15 EVERVVEEAKELQEAAATLINR-TSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 15 e~~~klee~~~LQ~~~~s~i~r-q~~e~~~l~~rl~~L~~~lkr~k 59 (363)
++...++++++-++.+++.|.+ ...+.++|+.++++++..|+.++
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLE 84 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777888888874 33445678888888888877765
No 8
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=49.00 E-value=81 Score=23.58 Aligned_cols=24 Identities=4% Similarity=0.087 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 017961 16 VERVVEEAKELQEAAATLINRTSS 39 (363)
Q Consensus 16 ~~~klee~~~LQ~~~~s~i~rq~~ 39 (363)
...|.+|++..-......+...+.
T Consensus 33 y~~k~eel~~~~~~~~~~l~~~k~ 56 (77)
T 3trt_A 33 YKSKFADLSEAANRNNDALRQAKQ 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344555544444444444444333
No 9
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=47.57 E-value=35 Score=27.15 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 017961 40 EEQSLRQRALSLDSNIRRLRS 60 (363)
Q Consensus 40 e~~~l~~rl~~L~~~lkr~k~ 60 (363)
|-+.|+.++.++..+..|++.
T Consensus 45 E~e~l~~El~s~~~~~~r~~~ 65 (77)
T 2w83_C 45 EKDVLQGELEAVKQAKLKLEE 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666553
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.90 E-value=1e+02 Score=30.43 Aligned_cols=13 Identities=0% Similarity=0.020 Sum_probs=6.8
Q ss_pred HHHHHHHHhhhcc
Q 017961 84 LEEDLQKAQCLIY 96 (363)
Q Consensus 84 l~~~i~~~~~~~~ 96 (363)
+++++++....+.
T Consensus 570 ~~~~~~~l~~~~~ 582 (597)
T 3oja_B 570 KRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhc
Confidence 4455555555543
No 11
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=44.32 E-value=74 Score=29.42 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=47.9
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 2 DEKRSNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 2 ~~~~~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
.|+|.-|+.+..+|-+.+.+++.++++..+..-.. ..+...|..+++.|.+.|.++.
T Consensus 103 AE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeE-n~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 103 AEKRRKALYEALKENEKLHKEIEQKDNEIARLKKE-NKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 47888899999999999999999999887766554 5667788888899999998875
No 12
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=42.17 E-value=57 Score=31.53 Aligned_cols=20 Identities=5% Similarity=0.112 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 017961 7 NCEKVEEEEVERVVEEAKEL 26 (363)
Q Consensus 7 ~~~~~~~~e~~~klee~~~L 26 (363)
.+.+++.+++++.+++.++-
T Consensus 373 eal~~~~~~i~~~l~~~~~~ 392 (471)
T 3mq9_A 373 EALKDAQTRITAARDGLRAV 392 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHH
Confidence 34555666666666555443
No 13
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=38.26 E-value=74 Score=31.84 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh---hhhhhHHHHHHHHHHHHHHHHHh
Q 017961 17 ERVVEEAKELQEAAATLINR---TSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 17 ~~klee~~~LQ~~~~s~i~r---q~~e~~~l~~rl~~L~~~lkr~k 59 (363)
...++++++-++.+++.|.+ ...+.++|..++++++..|+.++
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 89 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELE 89 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666666653 22334566777777776666654
No 14
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=36.46 E-value=1.1e+02 Score=25.77 Aligned_cols=38 Identities=13% Similarity=0.273 Sum_probs=30.7
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017961 2 DEKRSNCEKVEEEEVERVVEEAKELQEAAATLINRTSS 39 (363)
Q Consensus 2 ~~~~~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~ 39 (363)
++-|=|-++...|.+.+.|.+.++++..+..-+.+...
T Consensus 25 E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~ 62 (119)
T 3etw_A 25 EEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQA 62 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888999999999999998888887654
No 15
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=35.80 E-value=1.2e+02 Score=21.75 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 017961 12 EEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDS 53 (363)
Q Consensus 12 ~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~ 53 (363)
++|-+++.-..+..||++-+..+.-...--..|++|+..|..
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666667778887777666555544556666666543
No 16
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=35.37 E-value=34 Score=28.42 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 10 KVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 10 ~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
.++++=...|.++++..-......+...+.|...++..++.|...|..++
T Consensus 7 ~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~ 56 (129)
T 3tnu_B 7 TEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVK 56 (129)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777776666666666666666666666666666655544
No 17
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=35.35 E-value=1.3e+02 Score=29.99 Aligned_cols=25 Identities=8% Similarity=-0.044 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 017961 9 EKVEEEEVERVVEEAKELQEAAATL 33 (363)
Q Consensus 9 ~~~~~~e~~~klee~~~LQ~~~~s~ 33 (363)
.|.+.+|++++-+++..|-..|...
T Consensus 43 LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 43 IEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777788888888888887777666
No 18
>1szi_A TIP47, mannose-6-phosphate receptor binding protein 1; 4-helix bundle, alpha/beta domain, PAT protein, lipid binding, peptide binding; 2.80A {Mus musculus} SCOP: a.24.23.1
Probab=34.11 E-value=2.1e+02 Score=26.87 Aligned_cols=105 Identities=14% Similarity=0.216 Sum_probs=64.2
Q ss_pred hhhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHHH
Q 017961 6 SNCEKVEEEEVERVVEEA-KELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQL 84 (363)
Q Consensus 6 ~~~~~~~~~e~~~klee~-~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~~~l 84 (363)
+.|.|.++-+.=..+..+ ..||++|.+.++-...==..+++.+..+......+........ +=.+ +++.... +-
T Consensus 130 ~~~~E~~EsrtL~~arsLtqqLqstc~~lvssvqGLP~~vQdq~~~a~~~a~eL~s~fs~a~-Sf~D---l~~~~L~-qs 204 (247)
T 1szi_A 130 PAKPEQVEARALSMFRDITQQLQSMCVALGASIQGLPSHVREQAQQARSQVNDLQATFSGIH-SFQD---LSAGVLA-QT 204 (247)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHGGGCC-SGGG---CCHHHHH-HH
T ss_pred cchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhhc-chhh---cCHHHHH-Hh
Confidence 345666666655555554 5799999999998777666677777766666554432222221 1111 3445555 47
Q ss_pred HHHHHHHhhhccccchhccCCCCCCCccceeecccc
Q 017961 85 EEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPI 120 (363)
Q Consensus 85 ~~~i~~~~~~~~~~dme~~LP~k~nG~yL~l~LG~v 120 (363)
+..|.+++..+. ++-+++= |..=|+-+.|+.
T Consensus 205 r~~l~~~~~sld--~v~d~l~---~n~PL~WLVGPF 235 (247)
T 1szi_A 205 RERIARAREALD--NTVEYVA---QNTPAMWLVGPF 235 (247)
T ss_dssp HHHHHHHHHHHH--HHHHHHH---TCCCTTCEEEEE
T ss_pred HHHHHHHHHHHH--HHHHHHH---hCCCccccccCc
Confidence 888999988886 6666653 334556666653
No 19
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=32.52 E-value=2.3e+02 Score=28.77 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh-----------hhHHHHHHHHHHHHHHHHHh
Q 017961 18 RVVEEAKELQEAAATLINRTSS-----------EEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 18 ~klee~~~LQ~~~~s~i~rq~~-----------e~~~l~~rl~~L~~~lkr~k 59 (363)
..+|++++-++.+++.|.+-++ +.++|+.++++++..|+.++
T Consensus 84 ~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~ 136 (501)
T 1wle_A 84 EQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLY 136 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777764321 33466677777766666654
No 20
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=32.52 E-value=90 Score=28.79 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=32.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 017961 4 KRSNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRS 60 (363)
Q Consensus 4 ~~~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~ 60 (363)
.|-.+...+++|..+++.|..+|+.++++ ++. .+.+|.+++++++.
T Consensus 27 ~~~~~~~~~~a~~~s~~s~~~dl~~s~~~----l~a-------e~~~L~~~l~kLeG 72 (206)
T 3oa7_A 27 ERTEALQQLRVNYGSFVSEYNDLTKSHNT----LSK-------ELDNLRSRFGNLEG 72 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh-------HHHHHHHHHHHccC
Confidence 35566778889999999999999877665 444 55566666666553
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.81 E-value=1.8e+02 Score=26.35 Aligned_cols=20 Identities=15% Similarity=0.474 Sum_probs=14.6
Q ss_pred HHHHhhcCCCCcchHHHHHH
Q 017961 158 LRSWIWDGCLPAFPVQLYQA 177 (363)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~f 177 (363)
+...+|.||+..+|.+.++-
T Consensus 196 v~~~~C~GC~~~lppq~~~~ 215 (256)
T 3na7_A 196 IKKQACGGCFIRLNDKIYTE 215 (256)
T ss_dssp CBTTBCTTTCCBCCHHHHHH
T ss_pred eeCCccCCCCeeeCHHHHHH
Confidence 34567889998888776663
No 22
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=29.92 E-value=1.7e+02 Score=25.66 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHHHHHHHHHHhhhc
Q 017961 17 ERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEEDLQKAQCLI 95 (363)
Q Consensus 17 ~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~~~l~~~i~~~~~~~ 95 (363)
..|++++.+=-..+.+-|++-+.|...++..+.-.++.|+|...+ ...-+++-+-.. +++.++++.-.+.
T Consensus 45 qgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~q--------QnQQSlDiRKLr-ELEADLKEKDsMV 114 (167)
T 4gkw_A 45 QGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQ--------QNQQSLDMRKLG-ELEADLKEKDSMV 114 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHTH-HHHHTHHHHHHHH
T ss_pred HhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHH--------HhHhhhhHHHHH-HHHhHHhhhhHHH
Confidence 446777777777788888888888888888887777777764311 111112223333 4667777765554
No 23
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.87 E-value=32 Score=28.67 Aligned_cols=50 Identities=22% Similarity=0.179 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 10 KVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 10 ~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
.++++=...|+++++..-......+...+.|...++..++.|...|..++
T Consensus 9 ~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~ 58 (131)
T 3tnu_A 9 KDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQL 58 (131)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777877777666666666666666666666666666655443
No 24
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=29.10 E-value=2.9e+02 Score=24.12 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 017961 12 EEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIR 56 (363)
Q Consensus 12 ~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lk 56 (363)
+++|...+-+.++.|..+...+..| ++....+++.|...++
T Consensus 47 LEeeL~~v~~nlKsLE~seekasqr----Ed~yEeqIk~L~~kLK 87 (155)
T 2efr_A 47 LEEELKTVTNNLKSLEAQAEKYSQK----EDKYEEEIKVLSDKLK 87 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhhhhHHHHH----HHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333 2344444444444444
No 25
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=28.42 E-value=1.8e+02 Score=24.74 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=31.4
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017961 2 DEKRSNCEKVEEEEVERVVEEAKELQEAAATLINRTS 38 (363)
Q Consensus 2 ~~~~~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~ 38 (363)
++.|-|=++.++|.+.+.|.+.++++..+...+++..
T Consensus 25 E~qrynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~ 61 (119)
T 2avr_X 25 EEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQ 61 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777889999999999999999999999888853
No 26
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.10 E-value=2.6e+02 Score=28.51 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHh
Q 017961 19 VVEEAKELQEAAATLINRTS---SEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 19 klee~~~LQ~~~~s~i~rq~---~e~~~l~~rl~~L~~~lkr~k 59 (363)
.+|++++-++.+++.|...+ .+.++|..++++++..|+.++
T Consensus 48 ~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le 91 (485)
T 3qne_A 48 DLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEII 91 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHH
Confidence 34455555555665554322 234556666666666665544
No 27
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=25.77 E-value=74 Score=31.43 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHh
Q 017961 19 VVEEAKELQEAAATLINRTS---SEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 19 klee~~~LQ~~~~s~i~rq~---~e~~~l~~rl~~L~~~lkr~k 59 (363)
.++++++-++.+++.|.+.+ .+.++|+.++++++..|+.++
T Consensus 45 ~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 88 (425)
T 2dq3_A 45 RLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLE 88 (425)
T ss_dssp HHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555321 223455555555555555544
No 28
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.34 E-value=1.6e+02 Score=29.57 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=4.9
Q ss_pred ccchhhhhhhH
Q 017961 131 LKVKEEYNSYR 141 (363)
Q Consensus 131 f~yKdEYEkFK 141 (363)
+.||=|||.+.
T Consensus 172 l~~~vD~e~ye 182 (390)
T 1deq_A 172 LEHKVDLEDYK 182 (390)
T ss_pred hhhhccHHHHH
Confidence 44454444443
No 29
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=24.05 E-value=2.7e+02 Score=24.34 Aligned_cols=28 Identities=11% Similarity=-0.007 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017961 9 EKVEEEEVERVVEEAKELQEAAATLINR 36 (363)
Q Consensus 9 ~~~~~~e~~~klee~~~LQ~~~~s~i~r 36 (363)
.++..+++.+|.+|+..+......+-.|
T Consensus 9 lkeaae~ad~KyeEvaR~E~dLEraEER 36 (155)
T 2efr_A 9 VEELLSKNYHLENEVARLKKLLERAEER 36 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4455788888888877654444444444
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.91 E-value=4e+02 Score=27.91 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 017961 42 QSLRQRALSLDSNIRRLRSL 61 (363)
Q Consensus 42 ~~l~~rl~~L~~~lkr~k~~ 61 (363)
.+||..|.++...|+|++.+
T Consensus 134 rvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443
No 31
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=22.41 E-value=2.6e+02 Score=35.07 Aligned_cols=81 Identities=11% Similarity=0.136 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHH--------------------HHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 017961 3 EKRSNCEKVEEEEVERVVEEAKELQEAA--------------------ATLINRTSSEEQSLRQRALSLDSNIRRLRSLL 62 (363)
Q Consensus 3 ~~~~~~~~~~~~e~~~klee~~~LQ~~~--------------------~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l 62 (363)
|+.+..-++.+++++...+|+.+.++.| .........+..+.+++++++...|.+++.+.
T Consensus 1972 e~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~ 2051 (3245)
T 3vkg_A 1972 EIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEY 2051 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccccccccccccChHHHHHHHHHHHHHHhhhc
Q 017961 63 HSSISSTNNLLRFDSKLADKQLEEDLQKAQCLI 95 (363)
Q Consensus 63 ~~~~~~e~~~~~~~~~~~~~~l~~~i~~~~~~~ 95 (363)
.... +..+ +++++++..+..+
T Consensus 2052 ~~~~-----------~ek~-~L~~e~~~~~~kl 2072 (3245)
T 3vkg_A 2052 ATLI-----------RETE-QIKTESSKVKNKV 2072 (3245)
T ss_dssp HHHH-----------HHHH-HHHHHHHHHHHHH
T ss_pred HHHH-----------HHHH-HHHHHHHHHHHHH
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.13 E-value=1.3e+02 Score=31.54 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 017961 9 EKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSL 61 (363)
Q Consensus 9 ~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~ 61 (363)
-..|.++|...+..++.||+.......+. ++-=.+++.-|+.|+..
T Consensus 119 IqyLKekVdnQlsnIrvLQsnLedq~~kI-------QRLEvDIdiqirsCKgs 164 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQKNVRAQLVDM-------KRLEVDIDIKIRSCRGS 164 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcccc
Confidence 34455666666666666665544433332 11223444455566643
No 33
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.95 E-value=3.4e+02 Score=24.73 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 017961 15 EVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLH 63 (363)
Q Consensus 15 e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~ 63 (363)
.|..+..|.+.|.+.-. +| ..|.++|++++.+++...+..+.+++
T Consensus 21 LV~~L~~En~~L~~ql~---~k-~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 21 LVANLVNENFVLSEKLD---TK-ATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp HHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 34445555555544433 22 45677788888888888887664443
No 34
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=21.54 E-value=2.3e+02 Score=22.35 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 017961 16 VERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRR 57 (363)
Q Consensus 16 ~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr 57 (363)
+...++++.++++.. ++.-. ..+++++++..+...+++
T Consensus 24 i~~~v~~l~~~~~~~---L~~~~-~~~~~~~~l~~l~~~i~~ 61 (127)
T 1ez3_A 24 IAENVEEVKRKHSAI---LASPN-PDEKTKEELEELMSDIKK 61 (127)
T ss_dssp HHHHHHHHHHHHHHH---HHCSS-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HhcCC-ccHHHHHHHHHHHHHHHH
Confidence 344444555555544 44322 244566666666665554
No 35
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=20.78 E-value=49 Score=21.32 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhhh
Q 017961 244 MMQGVAMLLQNRYQRQ 259 (363)
Q Consensus 244 ~~qs~Vq~lQ~rYQrg 259 (363)
+|--++|++|-+||+.
T Consensus 3 fMkDvlql~qQy~qsh 18 (26)
T 1kdl_A 3 FMKDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567899999999985
No 36
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=20.46 E-value=3e+02 Score=28.02 Aligned_cols=17 Identities=6% Similarity=0.257 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhhh
Q 017961 242 WAMMQGVAMLLQNRYQR 258 (363)
Q Consensus 242 fs~~qs~Vq~lQ~rYQr 258 (363)
+..+..+++....=||+
T Consensus 336 ~~e~e~~~~~~e~il~~ 352 (484)
T 3lss_A 336 WRHLEDMITTSEEFNKS 352 (484)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 37
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.00 E-value=3.6e+02 Score=22.02 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 017961 6 SNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRL 58 (363)
Q Consensus 6 ~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~ 58 (363)
.||.--+..|..+....+...=+...+-+.. |...|.+++..|+..+++.
T Consensus 24 sncshQVQqELs~tfarLc~~Vd~t~~eL~~---EI~~L~~eI~~LE~iqs~a 73 (96)
T 1t3j_A 24 ANCSHQVQQEMATTFARLCQQVDMTQKHLEE---EIARLSKEIDQLEKMQNNS 73 (96)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 4666666666665555555544444443332 3444444555555444443
Done!