Query 017961
Match_columns 363
No_of_seqs 106 out of 133
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 07:42:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017961.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017961hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 59.5 11 0.00083 28.2 6.6 44 16-59 40-84 (110)
2 d1szia_ a.24.23.1 (A:) Mannose 51.1 38 0.0028 29.4 9.4 103 7-119 116-219 (226)
3 d1cuna2 a.7.1.1 (A:116-219) Sp 46.8 35 0.0025 24.0 7.3 50 10-59 40-89 (104)
4 d1u5pa2 a.7.1.1 (A:1772-1872) 45.5 29 0.0021 24.1 6.5 44 11-54 42-85 (101)
5 d2spca_ a.7.1.1 (A:) Spectrin 43.5 47 0.0034 23.1 7.5 41 11-51 47-87 (107)
6 d1u5pa1 a.7.1.1 (A:1662-1771) 40.0 41 0.003 23.7 6.7 50 10-59 45-94 (110)
7 d1rtya_ a.25.2.2 (A:) Putative 36.1 95 0.0069 24.8 9.1 78 15-96 7-84 (161)
8 d1st6a3 a.24.9.1 (A:253-371) V 28.8 64 0.0046 25.3 6.5 44 13-59 44-87 (119)
9 d1quua1 a.7.1.1 (A:1-124) alph 23.2 1.2E+02 0.0088 21.5 9.6 49 10-58 58-106 (124)
10 d2e50a1 d.305.1.1 (A:1-222) Pr 20.7 1.2E+02 0.0088 25.3 7.3 52 5-56 17-68 (222)
11 d1st6a4 a.24.9.1 (A:372-488) V 20.0 1.3E+02 0.0091 23.5 6.6 45 13-59 34-78 (117)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=59.54 E-value=11 Score=28.23 Aligned_cols=44 Identities=18% Similarity=0.364 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHh
Q 017961 16 VERVVEEAKELQEAAATLINRTSS-EEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 16 ~~~klee~~~LQ~~~~s~i~rq~~-e~~~l~~rl~~L~~~lkr~k 59 (363)
....+|++++-++..++.|.+.++ +.+++.++++++++.|+.++
T Consensus 40 l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le 84 (110)
T d1seta1 40 LKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLE 84 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 344566666667777888866443 34566777777766666654
No 2
>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=51.08 E-value=38 Score=29.37 Aligned_cols=103 Identities=15% Similarity=0.215 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHHHH
Q 017961 7 NCEKVEEEEVERVVEEA-KELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLE 85 (363)
Q Consensus 7 ~~~~~~~~e~~~klee~-~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~~~l~ 85 (363)
+|-|.++.+.=..+..+ ..||++|++..+-..+==+.+++++.....+...+....+... +=.+ +++.... +-+
T Consensus 116 ~~~e~vEsrtL~~ar~LtqQLqstc~~L~ssiqGLP~~iQdq~~~~r~~~~~L~~~f~~a~-Sf~d---Ls~~~L~-~sr 190 (226)
T d1szia_ 116 AKPEQVEARALSMFRDITQQLQSMCVALGASIQGLPSHVREQAQQARSQVNDLQATFSGIH-SFQD---LSAGVLA-QTR 190 (226)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHGGGCC-SGGG---CCHHHHH-HHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhcc-cHhh---cCHHHHH-HHH
Confidence 34455655554444444 4799999999888777667788888888877776665544432 1111 4566666 488
Q ss_pred HHHHHHhhhccccchhccCCCCCCCccceeeccc
Q 017961 86 EDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGP 119 (363)
Q Consensus 86 ~~i~~~~~~~~~~dme~~LP~k~nG~yL~l~LG~ 119 (363)
+.+.+++..+. ++-.|+- |+.=|+.+.||
T Consensus 191 ~ql~~~~~~ld--~lldyl~---~ntPL~WLVGP 219 (226)
T d1szia_ 191 ERIARAREALD--NTVEYVA---QNTPAMWLVGP 219 (226)
T ss_dssp HHHHHHHHHHH--HHHHHHH---TCCCTTCEEEE
T ss_pred HHHHHHHHHHH--HHHHHHh---cCCCcccccCC
Confidence 88999999887 6777774 44567777776
No 3
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=46.82 E-value=35 Score=24.00 Aligned_cols=50 Identities=10% Similarity=0.225 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 10 KVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 10 ~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
+++..|+...-+.+..+.+.+...+.....+.+.+++++..|...-..+.
T Consensus 40 ~~~~~ei~~~~~~~~~l~~~g~~L~~~~~~~~~~I~~~~~~l~~~w~~L~ 89 (104)
T d1cuna2 40 EAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHH
Confidence 45666666666677777777777666666666666666666665555443
No 4
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=45.54 E-value=29 Score=24.13 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 017961 11 VEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSN 54 (363)
Q Consensus 11 ~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~ 54 (363)
.+..++...-+.+..+.+.+...+.....+.+.++.++..|...
T Consensus 42 ~~~~~i~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~~~~l~~~ 85 (101)
T d1u5pa2 42 RLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDH 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 34444555555555555555555544444444444444444333
No 5
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]}
Probab=43.49 E-value=47 Score=23.09 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 017961 11 VEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSL 51 (363)
Q Consensus 11 ~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L 51 (363)
++..|+...-+.+.++.+.+...+.+...+.+.++.++.++
T Consensus 47 ~~~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~I~~~~~~l 87 (107)
T d2spca_ 47 DFDKAINGHEQKIAALQTVADQLIAQNHYASNLVDEKRKQV 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 34444444444455555555555554444444444444433
No 6
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=39.95 E-value=41 Score=23.70 Aligned_cols=50 Identities=12% Similarity=0.374 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 10 KVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 10 ~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
+.+..|+...-+.+.++.+.+...+...-.+.+.+++++..+...-..++
T Consensus 45 ~~~~~ei~~~~~~i~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~ 94 (110)
T d1u5pa1 45 QLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIK 94 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666677776666666655566666666666655554443
No 7
>d1rtya_ a.25.2.2 (A:) Putative ATP-binding cobalamin adenosyltransferase YvqK {Bacillus subtilis [TaxId: 1423]}
Probab=36.09 E-value=95 Score=24.84 Aligned_cols=78 Identities=10% Similarity=0.065 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHHHHHHHHHHhhh
Q 017961 15 EVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEEDLQKAQCL 94 (363)
Q Consensus 15 e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~~~l~~~i~~~~~~ 94 (363)
|+-+-++|+.+.=-.|.+.+... ...+.++..+..+.+.|-.+..+++.. ++.+..+|.++.++ +|++.|.+-...
T Consensus 7 ea~GtvDELns~iGla~~~~~~~-~~~~~~~~~L~~IQ~~Lf~ig~~la~~--~~~~~~~i~~~~v~-~LE~~ID~~~~~ 82 (161)
T d1rtya_ 7 ESYGTIDELNSFIGLALAELSGQ-PGFEDLTAELLTIQHELFDCGGDLAIV--TERKDYKLTEESVS-FLETRIDAYTAE 82 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHHHHHCC--C---CCCCCHHHHH-HHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhccCC-CCcchHHHHHHHHHHHHHHHHHHHCCC--ccccccccCHHHHH-HHHHHHHHHHhh
Confidence 44456777776666666665542 122345556666666666665555553 23333457766666 588777766555
Q ss_pred cc
Q 017961 95 IY 96 (363)
Q Consensus 95 ~~ 96 (363)
+-
T Consensus 83 lp 84 (161)
T d1rtya_ 83 AP 84 (161)
T ss_dssp SC
T ss_pred hc
Confidence 53
No 8
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=28.76 E-value=64 Score=25.31 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 13 EEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 13 ~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
++.+.+.++|.+++-+.|. ..++.|...+-.++..+...|-.++
T Consensus 44 e~AiR~il~earkva~~~~---~~~r~~Il~~c~ei~~lt~qLadLr 87 (119)
T d1st6a3 44 EQAIRQILDEAGKAGELCA---GKERREILGTCKTLGQMTDQLADLR 87 (119)
T ss_dssp HHHHHHHHHHHHHHHHTTC---STTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCC---chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999985 4555666666666666666666555
No 9
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.20 E-value=1.2e+02 Score=21.52 Aligned_cols=49 Identities=12% Similarity=0.176 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 017961 10 KVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRL 58 (363)
Q Consensus 10 ~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~ 58 (363)
+++..++...-+.+..+.+.+...+...-.+.+.+++++.++...-..+
T Consensus 58 ~~~~~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~rW~~L 106 (124)
T d1quua1 58 EAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRL 106 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666665555555555555555444443
No 10
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.74 E-value=1.2e+02 Score=25.25 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=33.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 017961 5 RSNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIR 56 (363)
Q Consensus 5 ~~~~~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lk 56 (363)
-+.+.+....++.+.++++.++|......-..-.+|...|+++......-+-
T Consensus 17 ~~~~~~~~~~~~~~~i~~L~~iQ~e~~~l~~e~~~e~~~le~k~~~~~~ply 68 (222)
T d2e50a1 17 HDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFF 68 (222)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3445677788888889999999988776666655555556555555544443
No 11
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.01 E-value=1.3e+02 Score=23.48 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 017961 13 EEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (363)
Q Consensus 13 ~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k 59 (363)
++.+.+.++|.+++-+.|..--. +.|...+-.++..+...|-.++
T Consensus 34 e~AiR~il~earkva~~~~~P~~--r~~il~lc~ei~~lt~qLadLr 78 (117)
T d1st6a4 34 EEHIRGIMSEARKVAELCEEPKE--RDDILRSLGEISALTAKLSDLR 78 (117)
T ss_dssp HHHHHHHHHHHHHHHHHSCSTTT--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999965322 2344444445555555554444
Done!