Query 017962
Match_columns 363
No_of_seqs 137 out of 166
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:57:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01959 DHQS: 3-dehydroquinat 100.0 3E-136 7E-141 999.7 39.3 340 13-363 1-354 (354)
2 PRK02290 3-dehydroquinate synt 100.0 6E-136 1E-140 994.5 39.5 336 12-363 1-344 (344)
3 COG1465 Predicted alternative 100.0 3E-132 7E-137 953.1 35.4 342 11-363 1-376 (376)
4 smart00306 HintN Hint (Hedgeho 97.2 0.0017 3.7E-08 50.9 7.7 90 244-344 7-99 (100)
5 PF01079 Hint: Hint module; I 97.2 0.0023 5E-08 60.4 9.4 98 241-344 14-115 (217)
6 cd00081 Hint Hedgehog/Intein d 93.7 0.38 8.3E-06 39.8 7.9 89 245-344 7-99 (136)
7 TIGR02311 HpaI 2,4-dihydroxyhe 92.2 0.77 1.7E-05 43.8 8.6 90 73-166 14-107 (249)
8 cd00331 IGPS Indole-3-glycerol 90.9 2.5 5.4E-05 38.6 10.1 112 20-152 82-202 (217)
9 cd00452 KDPG_aldolase KDPG and 89.3 1.4 2.9E-05 39.9 7.0 111 21-155 18-128 (190)
10 TIGR03239 GarL 2-dehydro-3-deo 89.1 1.5 3.3E-05 42.0 7.6 90 71-165 12-106 (249)
11 PRK10128 2-keto-3-deoxy-L-rham 89.0 1.5 3.3E-05 42.7 7.6 92 71-165 18-112 (267)
12 PRK10558 alpha-dehydro-beta-de 87.5 2.3 4.9E-05 41.0 7.7 90 71-165 19-113 (256)
13 PRK10558 alpha-dehydro-beta-de 86.9 2 4.4E-05 41.3 6.9 101 20-156 79-181 (256)
14 PRK00278 trpC indole-3-glycero 85.4 9.4 0.0002 36.7 10.6 115 22-157 123-251 (260)
15 cd04729 NanE N-acetylmannosami 84.4 3.5 7.7E-05 37.8 7.0 109 22-153 82-208 (219)
16 PF01729 QRPTase_C: Quinolinat 84.2 3.1 6.6E-05 38.0 6.4 42 122-166 81-122 (169)
17 PF07591 PT-HINT: Pretoxin HIN 83.5 0.64 1.4E-05 40.4 1.6 83 246-344 2-86 (130)
18 TIGR00262 trpA tryptophan synt 83.2 7.1 0.00015 37.6 8.7 116 22-153 105-229 (256)
19 PRK11479 hypothetical protein; 83.0 0.71 1.5E-05 45.6 1.9 49 314-362 44-105 (274)
20 PF14890 Intein_splicing: Inte 82.9 15 0.00033 35.6 11.0 86 244-344 2-92 (323)
21 PRK05826 pyruvate kinase; Prov 82.8 4.5 9.7E-05 42.6 7.7 44 112-156 206-249 (465)
22 PF03328 HpcH_HpaI: HpcH/HpaI 82.5 6.4 0.00014 36.2 7.9 92 73-167 2-108 (221)
23 PRK05848 nicotinate-nucleotide 82.1 2.7 5.9E-05 41.2 5.5 41 122-165 183-223 (273)
24 cd06220 DHOD_e_trans_like2 FAD 81.8 7.1 0.00015 35.9 7.9 50 240-296 49-98 (233)
25 PF00224 PK: Pyruvate kinase, 81.1 1.5 3.3E-05 43.9 3.5 133 20-165 177-335 (348)
26 PF02662 FlpD: Methyl-viologen 80.9 2.1 4.5E-05 37.1 3.9 51 130-180 38-101 (124)
27 PRK08345 cytochrome-c3 hydroge 80.9 8.4 0.00018 37.0 8.3 98 178-294 6-116 (289)
28 TIGR03239 GarL 2-dehydro-3-deo 80.8 4.9 0.00011 38.6 6.7 101 20-156 72-174 (249)
29 PTZ00300 pyruvate kinase; Prov 80.0 4.2 9.2E-05 42.7 6.4 141 119-272 186-381 (454)
30 PRK10128 2-keto-3-deoxy-L-rham 80.0 5.4 0.00012 39.0 6.7 131 21-154 79-240 (267)
31 CHL00200 trpA tryptophan synth 79.6 6.3 0.00014 38.3 7.0 115 21-153 108-233 (263)
32 PLN02591 tryptophan synthase 79.3 7.5 0.00016 37.6 7.4 117 21-153 95-220 (250)
33 cd04732 HisA HisA. Phosphorib 78.5 31 0.00067 31.5 10.9 130 14-152 75-220 (234)
34 PRK05826 pyruvate kinase; Prov 77.9 18 0.00039 38.1 10.2 38 130-167 172-210 (465)
35 PTZ00066 pyruvate kinase; Prov 77.5 9.8 0.00021 40.7 8.2 208 20-273 210-445 (513)
36 PRK01130 N-acetylmannosamine-6 77.3 12 0.00025 34.4 7.8 110 21-153 77-204 (221)
37 PRK10838 spr outer membrane li 77.1 1.6 3.6E-05 40.7 2.2 31 327-357 121-151 (190)
38 TIGR02311 HpaI 2,4-dihydroxyhe 76.8 6.9 0.00015 37.5 6.3 38 119-156 137-175 (249)
39 PRK05713 hypothetical protein; 76.7 20 0.00043 34.8 9.5 43 249-294 157-200 (312)
40 PF10844 DUF2577: Protein of u 76.1 8 0.00017 32.3 5.8 90 169-282 11-100 (100)
41 PF03060 NMO: Nitronate monoox 76.0 2.8 6.1E-05 41.3 3.6 50 96-152 115-164 (330)
42 TIGR03151 enACPred_II putative 75.7 7.3 0.00016 38.4 6.3 113 19-152 22-137 (307)
43 PRK01130 N-acetylmannosamine-6 75.2 39 0.00084 31.0 10.6 115 22-151 26-146 (221)
44 PRK06106 nicotinate-nucleotide 75.1 5.5 0.00012 39.4 5.3 42 122-166 195-236 (281)
45 PRK13922 rod shape-determining 74.5 40 0.00087 32.2 10.9 118 157-283 101-240 (276)
46 COG1370 Prefoldin, molecular c 74.1 2.8 6E-05 38.5 2.7 93 180-290 40-140 (155)
47 PRK06559 nicotinate-nucleotide 74.1 6.6 0.00014 39.1 5.6 42 121-165 197-238 (290)
48 PF00970 FAD_binding_6: Oxidor 73.5 20 0.00043 28.3 7.2 88 179-274 1-97 (99)
49 PRK08385 nicotinate-nucleotide 72.1 7.3 0.00016 38.4 5.3 55 109-166 168-224 (278)
50 PRK07896 nicotinate-nucleotide 71.5 8.5 0.00018 38.3 5.7 42 122-166 200-241 (289)
51 PF13403 Hint_2: Hint domain 71.5 10 0.00022 33.6 5.7 90 244-342 7-113 (147)
52 PLN02762 pyruvate kinase compl 70.8 15 0.00032 39.4 7.6 134 20-166 204-365 (509)
53 TIGR00007 phosphoribosylformim 70.8 53 0.0011 30.1 10.4 130 14-152 74-219 (230)
54 PRK08221 anaerobic sulfite red 70.6 26 0.00057 33.2 8.6 58 233-294 49-109 (263)
55 PRK00054 dihydroorotate dehydr 70.5 5 0.00011 37.3 3.7 61 231-296 49-112 (250)
56 PRK06543 nicotinate-nucleotide 70.3 8.2 0.00018 38.2 5.2 42 122-166 194-235 (281)
57 PRK05458 guanosine 5'-monophos 70.3 15 0.00032 37.1 7.2 115 19-151 48-168 (326)
58 COG3364 Zn-ribbon containing p 70.2 4.5 9.7E-05 35.3 3.0 36 311-352 61-96 (112)
59 PRK06096 molybdenum transport 69.3 9.1 0.0002 37.9 5.3 43 121-166 189-231 (284)
60 cd00331 IGPS Indole-3-glycerol 69.0 15 0.00032 33.6 6.3 113 21-154 33-151 (217)
61 PRK06978 nicotinate-nucleotide 69.0 9.8 0.00021 38.0 5.5 41 122-165 206-246 (294)
62 TIGR02219 phage_NlpC_fam putat 69.0 4.1 8.8E-05 35.3 2.5 31 327-357 69-101 (134)
63 PRK11840 bifunctional sulfur c 68.4 15 0.00033 37.4 6.7 101 20-159 182-291 (326)
64 PF13653 GDPD_2: Glycerophosph 68.2 9.3 0.0002 26.1 3.6 25 15-39 2-27 (30)
65 PLN02623 pyruvate kinase 68.0 10 0.00023 41.1 5.8 135 20-167 279-439 (581)
66 PRK10926 ferredoxin-NADP reduc 67.5 52 0.0011 30.8 9.8 45 247-295 69-115 (248)
67 cd04730 NPD_like 2-Nitropropan 67.3 27 0.00058 31.9 7.7 110 20-153 68-187 (236)
68 PF00072 Response_reg: Respons 66.7 20 0.00043 27.7 5.8 80 78-160 28-109 (112)
69 cd05829 Sortase_E Sortase E (S 66.1 8.1 0.00017 34.0 3.9 33 251-283 65-97 (144)
70 PRK14725 pyruvate kinase; Prov 65.9 18 0.00038 39.7 7.1 187 120-347 139-347 (608)
71 KOG0538 Glycolate oxidase [Ene 65.9 3.3 7.1E-05 42.2 1.5 113 21-153 136-253 (363)
72 cd06217 FNR_iron_sulfur_bindin 65.8 41 0.00088 30.4 8.5 58 232-294 50-115 (235)
73 cd06196 FNR_like_1 Ferredoxin 65.2 9.6 0.00021 34.2 4.3 54 232-294 47-107 (218)
74 PRK13289 bifunctional nitric o 65.1 28 0.0006 34.5 7.8 105 175-294 152-269 (399)
75 COG3836 HpcH 2,4-dihydroxyhept 65.1 16 0.00035 36.0 6.0 103 19-156 76-180 (255)
76 TIGR01334 modD putative molybd 64.3 13 0.00029 36.6 5.4 54 110-166 175-230 (277)
77 PF11247 DUF2675: Protein of u 64.0 4.1 8.9E-05 34.9 1.6 52 130-185 43-97 (98)
78 PRK07428 nicotinate-nucleotide 63.9 15 0.00032 36.4 5.6 42 121-165 196-237 (288)
79 PRK06739 pyruvate kinase; Vali 63.6 22 0.00048 36.3 6.9 134 20-166 166-326 (352)
80 TIGR03224 benzo_boxA benzoyl-C 63.3 28 0.0006 35.7 7.6 168 102-294 73-275 (411)
81 TIGR01370 cysRS possible cyste 63.0 55 0.0012 33.0 9.5 122 14-155 46-171 (315)
82 PRK06222 ferredoxin-NADP(+) re 62.7 7.4 0.00016 37.3 3.2 57 232-294 44-106 (281)
83 cd00405 PRAI Phosphoribosylant 62.1 47 0.001 30.1 8.2 113 21-155 8-131 (203)
84 PRK00278 trpC indole-3-glycero 61.9 26 0.00057 33.7 6.8 113 21-154 72-190 (260)
85 TIGR01064 pyruv_kin pyruvate k 61.4 12 0.00027 39.2 4.9 135 20-167 172-333 (473)
86 cd06192 DHOD_e_trans_like FAD/ 61.4 8 0.00017 35.6 3.1 59 231-294 42-105 (243)
87 TIGR02911 sulfite_red_B sulfit 61.3 12 0.00025 35.5 4.3 60 232-295 46-108 (261)
88 PLN02461 Probable pyruvate kin 61.2 23 0.00049 38.0 6.7 207 20-271 194-427 (511)
89 PRK09140 2-dehydro-3-deoxy-6-p 60.5 75 0.0016 29.7 9.4 122 21-165 24-148 (206)
90 cd04728 ThiG Thiazole synthase 60.5 27 0.00059 34.3 6.7 29 127-158 183-216 (248)
91 TIGR01306 GMP_reduct_2 guanosi 60.1 30 0.00065 34.9 7.1 114 19-151 45-165 (321)
92 PRK00208 thiG thiazole synthas 59.6 30 0.00065 34.1 6.8 30 126-158 182-216 (250)
93 PRK13585 1-(5-phosphoribosyl)- 59.1 39 0.00085 31.2 7.2 115 20-153 33-171 (241)
94 cd00322 FNR_like Ferredoxin re 58.8 13 0.00027 32.9 3.8 50 240-294 54-105 (223)
95 cd00288 Pyruvate_Kinase Pyruva 58.8 24 0.00051 37.4 6.4 134 20-166 175-334 (480)
96 PRK09016 quinolinate phosphori 58.7 21 0.00045 35.8 5.6 41 122-165 209-249 (296)
97 PRK13125 trpA tryptophan synth 57.9 27 0.00058 33.0 6.0 115 20-153 89-216 (244)
98 PTZ00314 inosine-5'-monophosph 57.6 28 0.00061 36.8 6.7 119 20-153 241-375 (495)
99 PF10844 DUF2577: Protein of u 57.5 8.2 0.00018 32.2 2.3 19 334-352 76-94 (100)
100 PF02581 TMP-TENI: Thiamine mo 57.0 53 0.0011 29.4 7.5 108 21-153 14-124 (180)
101 PRK11872 antC anthranilate dio 56.9 13 0.00027 36.7 3.8 49 240-294 166-217 (340)
102 PLN02716 nicotinate-nucleotide 56.5 24 0.00052 35.6 5.7 41 122-165 204-259 (308)
103 cd06211 phenol_2-monooxygenase 56.4 1.3E+02 0.0027 27.6 10.0 99 178-295 7-118 (238)
104 PF15057 DUF4537: Domain of un 56.4 63 0.0014 28.1 7.6 73 262-353 1-74 (124)
105 COG2197 CitB Response regulato 56.3 84 0.0018 29.1 8.9 83 77-161 30-113 (211)
106 TIGR01163 rpe ribulose-phospha 55.3 33 0.00072 30.5 5.9 22 20-41 67-88 (210)
107 cd06201 SiR_like2 Cytochrome p 55.2 1E+02 0.0022 29.8 9.5 109 174-294 42-163 (289)
108 cd04723 HisA_HisF Phosphoribos 55.1 1.3E+02 0.0027 28.4 10.0 125 14-152 80-219 (233)
109 PRK13957 indole-3-glycerol-pho 55.0 14 0.00031 35.9 3.8 163 21-213 63-232 (247)
110 PRK14898 DNA-directed RNA poly 54.8 55 0.0012 37.1 8.7 79 253-344 115-196 (858)
111 PF03328 HpcH_HpaI: HpcH/HpaI 54.6 1.1E+02 0.0023 28.2 9.3 134 16-156 5-155 (221)
112 cd00381 IMPDH IMPDH: The catal 54.5 31 0.00067 34.3 6.1 115 18-153 92-228 (325)
113 cd00564 TMP_TenI Thiamine mono 53.9 68 0.0015 27.7 7.5 108 22-151 15-122 (196)
114 cd06207 CyPoR_like NADPH cytoc 53.6 14 0.0003 37.0 3.6 63 227-294 159-238 (382)
115 PLN02765 pyruvate kinase 53.6 12 0.00027 40.1 3.3 205 20-269 207-438 (526)
116 PF01472 PUA: PUA domain; Int 53.4 21 0.00046 27.8 3.9 40 246-287 18-57 (74)
117 cd06198 FNR_like_3 NAD(P) bind 53.2 16 0.00035 32.8 3.6 58 231-294 40-103 (216)
118 TIGR01302 IMP_dehydrog inosine 52.7 49 0.0011 34.3 7.4 118 20-152 224-357 (450)
119 cd04743 NPD_PKS 2-Nitropropane 52.6 40 0.00086 34.1 6.5 114 94-225 82-212 (320)
120 PRK08649 inosine 5-monophospha 52.6 30 0.00065 35.4 5.8 51 93-151 153-215 (368)
121 PRK00043 thiE thiamine-phospha 52.5 1.7E+02 0.0037 26.0 10.7 82 69-156 103-198 (212)
122 PF05203 Hom_end_hint: Hom_end 52.3 15 0.00033 34.9 3.4 47 245-296 7-54 (215)
123 PF00290 Trp_syntA: Tryptophan 52.3 32 0.0007 33.6 5.7 115 22-153 105-228 (259)
124 cd06221 sulfite_reductase_like 52.2 23 0.00049 33.2 4.5 51 240-294 56-106 (253)
125 TIGR00432 arcsn_tRNA_tgt tRNA- 52.1 12 0.00025 40.3 2.8 32 257-290 495-526 (540)
126 TIGR03151 enACPred_II putative 51.8 58 0.0013 32.2 7.4 109 21-153 76-192 (307)
127 cd06213 oxygenase_e_transfer_s 51.8 1.7E+02 0.0036 26.6 9.9 40 250-295 69-109 (227)
128 PF02254 TrkA_N: TrkA-N domain 51.4 91 0.002 25.0 7.4 67 75-150 45-115 (116)
129 PRK15452 putative protease; Pr 51.3 1.3E+02 0.0029 31.6 10.3 136 14-163 5-154 (443)
130 TIGR03784 marine_sortase sorta 51.1 20 0.00043 32.9 3.9 32 252-283 102-133 (174)
131 PRK10840 transcriptional regul 51.1 1.1E+02 0.0025 27.0 8.6 67 94-161 49-119 (216)
132 PRK13802 bifunctional indole-3 50.9 1.3E+02 0.0028 33.7 10.6 117 21-162 122-257 (695)
133 TIGR01949 AroFGH_arch predicte 50.4 60 0.0013 30.8 7.1 131 24-166 95-248 (258)
134 PTZ00319 NADH-cytochrome B5 re 50.2 1.5E+02 0.0032 28.9 9.9 94 173-274 29-144 (300)
135 TIGR01182 eda Entner-Doudoroff 50.0 90 0.002 29.5 8.1 122 21-166 22-147 (204)
136 TIGR01445 intein_Nterm intein 50.0 47 0.001 25.4 5.3 61 244-317 5-74 (81)
137 PRK02083 imidazole glycerol ph 49.9 1.1E+02 0.0025 28.7 8.8 112 21-152 32-174 (253)
138 cd04726 KGPDC_HPS 3-Keto-L-gul 49.6 86 0.0019 27.9 7.6 77 71-152 54-134 (202)
139 cd06208 CYPOR_like_FNR These f 49.4 18 0.00038 34.7 3.4 41 250-294 103-143 (286)
140 cd06212 monooxygenase_like The 48.6 1.4E+02 0.0031 27.0 9.0 97 179-294 2-111 (232)
141 PRK09140 2-dehydro-3-deoxy-6-p 48.2 29 0.00063 32.4 4.5 86 74-162 13-101 (206)
142 cd06218 DHOD_e_trans FAD/NAD b 47.8 26 0.00057 32.7 4.2 59 232-295 44-107 (246)
143 PRK13958 N-(5'-phosphoribosyl) 47.6 2.2E+02 0.0047 26.6 10.2 114 20-153 9-131 (207)
144 TIGR00078 nadC nicotinate-nucl 47.3 53 0.0011 32.0 6.3 42 121-165 178-219 (265)
145 cd04731 HisF The cyclase subun 47.2 1.8E+02 0.004 26.9 9.7 112 21-154 29-172 (243)
146 cd06209 BenDO_FAD_NAD Benzoate 47.2 28 0.00062 31.5 4.2 50 240-295 59-111 (228)
147 COG4697 Uncharacterized protei 46.9 29 0.00064 35.0 4.5 71 181-251 177-279 (319)
148 PRK05742 nicotinate-nucleotide 46.8 44 0.00096 33.0 5.7 42 121-165 189-230 (277)
149 PRK06567 putative bifunctional 46.5 75 0.0016 37.1 8.2 91 177-276 790-889 (1028)
150 PRK10684 HCP oxidoreductase, N 46.3 22 0.00048 34.7 3.6 58 232-294 54-119 (332)
151 TIGR03128 RuMP_HxlA 3-hexulose 46.0 2.2E+02 0.0048 25.5 10.6 18 24-41 68-85 (206)
152 cd02812 PcrB_like PcrB_like pr 45.7 1.5E+02 0.0033 28.4 9.0 128 14-153 56-206 (219)
153 cd04724 Tryptophan_synthase_al 45.3 1E+02 0.0022 29.2 7.8 113 22-153 94-217 (242)
154 cd06184 flavohem_like_fad_nad_ 45.2 26 0.00055 32.2 3.6 60 231-295 56-122 (247)
155 cd06189 flavin_oxioreductase N 45.2 1.5E+02 0.0032 26.8 8.6 58 232-294 41-106 (224)
156 cd01572 QPRTase Quinolinate ph 44.5 60 0.0013 31.6 6.2 42 121-165 182-223 (268)
157 PRK05802 hypothetical protein; 44.1 16 0.00036 36.1 2.3 86 177-274 64-160 (320)
158 PLN02334 ribulose-phosphate 3- 43.6 1E+02 0.0022 28.7 7.4 125 22-165 78-222 (229)
159 PRK09427 bifunctional indole-3 43.5 85 0.0018 33.1 7.5 79 78-163 218-303 (454)
160 cd02809 alpha_hydroxyacid_oxid 43.5 95 0.0021 30.2 7.4 72 79-153 180-258 (299)
161 PRK07455 keto-hydroxyglutarate 43.3 1.3E+02 0.0029 27.5 8.0 118 21-165 26-150 (187)
162 cd06216 FNR_iron_sulfur_bindin 43.2 1.6E+02 0.0034 27.0 8.5 101 176-294 16-130 (243)
163 PF06032 DUF917: Protein of un 43.1 27 0.00058 35.5 3.7 53 300-357 267-348 (353)
164 PF14382 ECR1_N: Exosome compl 43.1 18 0.00038 25.9 1.7 38 246-285 1-38 (39)
165 PRK04302 triosephosphate isome 43.0 1.8E+02 0.0039 27.0 8.9 110 25-152 78-203 (223)
166 PF14623 Vint: Hint-domain 43.0 41 0.00088 31.2 4.5 72 243-316 6-103 (162)
167 cd04722 TIM_phosphate_binding 42.9 1.4E+02 0.003 25.2 7.5 17 26-42 78-94 (200)
168 TIGR01768 GGGP-family geranylg 42.9 86 0.0019 30.2 6.9 117 31-153 70-210 (223)
169 TIGR01588 citE citrate lyase, 41.9 1.8E+02 0.0038 28.5 9.0 73 94-166 24-108 (288)
170 cd06195 FNR1 Ferredoxin-NADP+ 41.9 31 0.00067 31.6 3.6 51 240-295 56-110 (241)
171 cd08610 GDPD_GDE6 Glycerophosp 41.8 32 0.00069 34.4 4.0 37 10-48 243-280 (316)
172 PRK10430 DNA-binding transcrip 41.8 1.7E+02 0.0036 26.6 8.4 66 94-161 49-116 (239)
173 cd06187 O2ase_reductase_like T 41.8 35 0.00077 30.5 3.9 49 240-294 54-106 (224)
174 cd08609 GDPD_GDE3 Glycerophosp 41.7 30 0.00065 34.5 3.8 37 11-49 244-281 (315)
175 PRK08051 fre FMN reductase; Va 41.5 2.1E+02 0.0046 26.2 9.0 96 179-294 4-110 (232)
176 PRK09206 pyruvate kinase; Prov 41.2 82 0.0018 33.5 7.0 123 19-154 172-315 (470)
177 PLN02274 inosine-5'-monophosph 41.0 83 0.0018 33.5 7.1 121 18-153 246-382 (505)
178 PRK01033 imidazole glycerol ph 40.1 3E+02 0.0066 26.3 10.1 120 20-152 84-227 (258)
179 PRK00748 1-(5-phosphoribosyl)- 40.0 1.5E+02 0.0033 27.0 7.9 22 20-41 84-105 (233)
180 TIGR01919 hisA-trpF 1-(5-phosp 39.8 1.4E+02 0.003 28.6 7.8 126 20-152 84-226 (243)
181 cd06215 FNR_iron_sulfur_bindin 39.8 35 0.00075 30.7 3.6 50 240-294 59-111 (231)
182 PRK06843 inosine 5-monophospha 39.6 56 0.0012 34.1 5.4 68 81-151 151-222 (404)
183 PRK04163 exosome complex RNA-b 39.4 2.4E+02 0.0052 26.9 9.3 91 247-347 11-124 (235)
184 COG0648 Nfo Endonuclease IV [D 39.3 14 0.0003 36.7 1.0 18 193-210 171-188 (280)
185 PRK13111 trpA tryptophan synth 39.2 1.3E+02 0.0028 29.3 7.5 114 21-153 106-230 (258)
186 PRK09958 DNA-binding transcrip 39.2 2.1E+02 0.0045 24.3 8.1 70 94-165 45-116 (204)
187 TIGR03128 RuMP_HxlA 3-hexulose 39.1 2E+02 0.0044 25.8 8.4 90 73-165 55-156 (206)
188 PF00107 ADH_zinc_N: Zinc-bind 39.1 2.1E+02 0.0045 23.1 9.0 110 13-142 15-129 (130)
189 PRK15447 putative protease; Pr 39.1 1.8E+02 0.004 28.5 8.7 126 18-163 12-151 (301)
190 PF08496 Peptidase_S49_N: Pept 39.0 21 0.00046 32.5 2.1 15 335-349 128-142 (155)
191 PRK08114 cystathionine beta-ly 39.0 22 0.00047 36.5 2.4 125 22-151 67-207 (395)
192 cd01568 QPRTase_NadC Quinolina 38.9 82 0.0018 30.6 6.2 42 121-165 181-222 (269)
193 cd06188 NADH_quinone_reductase 38.7 39 0.00085 32.0 3.9 40 249-294 118-158 (283)
194 cd04726 KGPDC_HPS 3-Keto-L-gul 38.6 2.4E+02 0.0052 25.0 8.7 112 22-152 67-187 (202)
195 PRK13585 1-(5-phosphoribosyl)- 38.6 2.1E+02 0.0045 26.4 8.6 107 54-164 5-121 (241)
196 PHA00440 host protein H-NS-int 38.5 19 0.00041 31.0 1.5 55 130-185 43-97 (98)
197 PRK14024 phosphoribosyl isomer 38.5 1.2E+02 0.0027 28.5 7.2 118 20-150 85-221 (241)
198 PRK10669 putative cation:proto 38.4 1.9E+02 0.0042 30.4 9.3 71 74-153 463-537 (558)
199 COG1465 Predicted alternative 38.3 27 0.00058 35.8 2.8 78 254-345 205-291 (376)
200 cd06183 cyt_b5_reduct_like Cyt 38.3 1.9E+02 0.0041 25.9 8.1 50 240-294 60-112 (234)
201 cd06200 SiR_like1 Cytochrome p 38.1 44 0.00096 31.2 4.1 37 252-294 79-117 (245)
202 TIGR01305 GMP_reduct_1 guanosi 38.1 35 0.00076 35.1 3.6 67 81-151 105-178 (343)
203 COG0084 TatD Mg-dependent DNas 38.0 15 0.00032 35.9 0.9 23 20-42 18-40 (256)
204 TIGR01941 nqrF NADH:ubiquinone 38.0 41 0.00089 34.0 4.1 41 248-294 237-278 (405)
205 TIGR02658 TTQ_MADH_Hv methylam 37.9 1.5E+02 0.0032 30.3 8.0 50 242-294 107-156 (352)
206 PRK14114 1-(5-phosphoribosyl)- 37.9 2.6E+02 0.0056 26.8 9.3 131 15-152 76-224 (241)
207 KOG3997 Major apurinic/apyrimi 37.6 11 0.00023 37.2 -0.0 14 193-206 175-188 (281)
208 PRK05718 keto-hydroxyglutarate 37.5 1.9E+02 0.004 27.5 8.1 78 77-165 72-153 (212)
209 cd08564 GDPD_GsGDE_like Glycer 37.4 60 0.0013 30.7 4.9 43 111-158 213-260 (265)
210 COG0543 UbiB 2-polyprenylpheno 37.2 34 0.00074 32.5 3.2 103 179-295 9-116 (252)
211 PRK02083 imidazole glycerol ph 37.1 2.5E+02 0.0054 26.4 9.0 104 55-165 7-120 (253)
212 cd06210 MMO_FAD_NAD_binding Me 36.9 1.8E+02 0.0039 26.3 7.8 59 231-294 50-116 (236)
213 TIGR00735 hisF imidazoleglycer 36.8 2.8E+02 0.0062 26.2 9.3 125 20-152 84-230 (254)
214 COG1585 Membrane protein impli 36.6 64 0.0014 28.8 4.7 36 243-280 101-138 (140)
215 PLN02274 inosine-5'-monophosph 36.4 56 0.0012 34.8 4.9 68 81-151 246-317 (505)
216 cd00958 DhnA Class I fructose- 36.3 1.4E+02 0.0031 27.5 7.1 73 80-157 140-225 (235)
217 cd03703 aeIF5B_II aeIF5B_II: T 35.9 72 0.0016 27.8 4.7 20 291-310 5-24 (110)
218 TIGR02276 beta_rpt_yvtn 40-res 35.9 71 0.0015 21.0 3.8 37 249-289 1-37 (42)
219 COG2022 ThiG Uncharacterized e 35.7 33 0.00071 34.0 2.9 39 110-152 174-212 (262)
220 PRK05464 Na(+)-translocating N 35.6 46 0.001 33.7 4.1 39 250-294 244-282 (409)
221 PF00218 IGPS: Indole-3-glycer 35.6 2.9E+02 0.0062 27.1 9.3 111 21-152 120-239 (254)
222 cd01573 modD_like ModD; Quinol 35.5 92 0.002 30.5 6.0 41 122-165 184-224 (272)
223 COG0684 MenG Demethylmenaquino 35.5 27 0.00059 33.4 2.3 27 255-282 64-90 (210)
224 PRK10643 DNA-binding transcrip 35.4 1.7E+02 0.0037 24.9 7.0 67 94-162 44-112 (222)
225 TIGR01588 citE citrate lyase, 35.1 4.4E+02 0.0095 25.7 10.6 128 16-156 6-157 (288)
226 TIGR02658 TTQ_MADH_Hv methylam 34.9 4.9E+02 0.011 26.7 11.2 78 234-320 252-330 (352)
227 TIGR01859 fruc_bis_ald_ fructo 34.8 93 0.002 30.6 5.9 150 15-165 77-245 (282)
228 PRK04000 translation initiatio 34.8 3.5E+02 0.0075 27.7 10.2 20 179-198 271-297 (411)
229 TIGR00693 thiE thiamine-phosph 34.7 1.8E+02 0.004 25.8 7.4 104 22-150 16-122 (196)
230 cd06206 bifunctional_CYPOR The 34.6 42 0.0009 33.7 3.5 41 249-294 196-238 (384)
231 PF14801 GCD14_N: tRNA methylt 34.6 42 0.00091 26.1 2.7 19 259-277 6-24 (54)
232 PRK13587 1-(5-phosphoribosyl)- 34.5 2.3E+02 0.005 26.8 8.3 121 20-150 86-220 (234)
233 TIGR01744 XPRTase xanthine pho 34.4 38 0.00082 31.4 3.0 35 242-277 96-135 (191)
234 PRK14560 putative RNA-binding 34.2 68 0.0015 28.7 4.5 53 235-289 79-136 (160)
235 cd04730 NPD_like 2-Nitropropan 34.0 1.5E+02 0.0033 27.0 6.8 51 94-152 80-130 (236)
236 PRK10336 DNA-binding transcrip 33.9 1.9E+02 0.004 24.7 7.0 67 94-162 44-112 (219)
237 PF00386 C1q: C1q domain; Int 33.8 37 0.00081 28.3 2.6 21 328-348 88-108 (127)
238 PRK13794 hypothetical protein; 33.5 55 0.0012 34.5 4.3 53 235-289 127-184 (479)
239 cd04732 HisA HisA. Phosphorib 33.3 2.6E+02 0.0057 25.4 8.3 106 55-165 3-116 (234)
240 COG3535 Uncharacterized conser 33.2 1.1E+02 0.0023 31.8 6.1 55 277-345 256-325 (357)
241 PRK06552 keto-hydroxyglutarate 33.2 3E+02 0.0065 26.0 8.8 123 21-165 27-153 (213)
242 PRK12778 putative bifunctional 33.1 61 0.0013 35.5 4.7 57 232-294 44-106 (752)
243 cd07896 Adenylation_kDNA_ligas 33.0 99 0.0021 27.3 5.3 28 127-154 130-158 (174)
244 PF04131 NanE: Putative N-acet 32.9 2.5E+02 0.0054 26.8 8.1 112 23-149 3-117 (192)
245 TIGR02160 PA_CoA_Oxy5 phenylac 32.8 42 0.0009 32.8 3.1 45 248-295 72-118 (352)
246 cd08612 GDPD_GDE4 Glycerophosp 32.7 87 0.0019 30.4 5.3 45 111-160 251-296 (300)
247 PRK06201 hypothetical protein; 32.7 29 0.00063 32.9 2.0 44 239-283 54-100 (221)
248 TIGR00007 phosphoribosylformim 32.4 3.1E+02 0.0067 25.1 8.6 34 126-162 79-115 (230)
249 PRK06806 fructose-bisphosphate 32.3 67 0.0014 31.6 4.5 137 15-154 77-233 (281)
250 COG0135 TrpF Phosphoribosylant 32.1 3.2E+02 0.0069 26.1 8.8 121 20-146 10-181 (208)
251 PF00977 His_biosynth: Histidi 32.0 2.2E+02 0.0049 26.7 7.7 128 14-152 75-221 (229)
252 COG0503 Apt Adenine/guanine ph 31.9 27 0.00059 31.9 1.6 69 208-276 56-133 (179)
253 PF00122 E1-E2_ATPase: E1-E2 A 31.8 32 0.00069 31.1 2.0 30 310-344 31-61 (230)
254 PRK05567 inosine 5'-monophosph 31.7 2.4E+02 0.0053 29.6 8.7 147 20-193 228-390 (486)
255 PRK09483 response regulator; P 31.5 2.9E+02 0.0063 23.6 7.9 41 121-162 75-115 (217)
256 cd06219 DHOD_e_trans_like1 FAD 31.4 58 0.0013 30.4 3.7 58 232-295 43-106 (248)
257 PRK00043 thiE thiamine-phospha 31.3 1.2E+02 0.0026 27.0 5.6 118 9-151 4-131 (212)
258 cd06191 FNR_iron_sulfur_bindin 31.3 42 0.00092 30.4 2.7 49 240-294 58-110 (231)
259 COG1908 FrhD Coenzyme F420-red 31.2 37 0.00081 30.5 2.3 21 132-152 41-61 (132)
260 PRK13586 1-(5-phosphoribosyl)- 31.1 4.7E+02 0.01 24.9 10.4 128 14-152 75-219 (232)
261 PF13403 Hint_2: Hint domain 31.1 43 0.00094 29.7 2.7 16 329-344 15-30 (147)
262 CHL00148 orf27 Ycf27; Reviewed 30.9 1.5E+02 0.0034 25.7 6.1 40 121-161 77-116 (240)
263 PRK11517 transcriptional regul 30.8 2E+02 0.0043 24.7 6.7 67 94-162 44-111 (223)
264 PRK00748 1-(5-phosphoribosyl)- 30.7 3.4E+02 0.0073 24.8 8.5 39 124-165 79-117 (233)
265 cd01571 NAPRTase_B Nicotinate 30.6 97 0.0021 30.7 5.3 46 122-167 185-240 (302)
266 cd06214 PA_degradation_oxidore 30.6 4.1E+02 0.0089 24.0 9.5 102 179-296 3-118 (241)
267 PRK13534 7-cyano-7-deazaguanin 30.3 39 0.00085 37.1 2.7 44 244-290 580-623 (639)
268 KOG3638 Sonic hedgehog and rel 30.2 1.3E+02 0.0028 31.3 6.3 144 185-346 165-319 (414)
269 PRK02290 3-dehydroquinate synt 30.1 34 0.00073 35.2 2.0 34 131-164 13-46 (344)
270 COG0157 NadC Nicotinate-nucleo 30.1 1.2E+02 0.0025 30.6 5.7 41 122-165 189-229 (280)
271 cd00508 MopB_CT_Fdh-Nap-like T 29.7 65 0.0014 26.0 3.4 24 258-285 48-71 (120)
272 PRK10046 dpiA two-component re 29.6 2.4E+02 0.0052 25.4 7.3 39 122-161 79-117 (225)
273 PRK13856 two-component respons 29.5 3.5E+02 0.0077 24.1 8.3 40 122-161 73-112 (241)
274 PRK13795 hypothetical protein; 29.5 59 0.0013 35.4 3.9 54 235-290 129-186 (636)
275 PF00877 NLPC_P60: NlpC/P60 fa 29.4 25 0.00055 28.4 0.9 28 329-356 46-73 (105)
276 cd08610 GDPD_GDE6 Glycerophosp 29.4 87 0.0019 31.3 4.7 47 112-163 236-283 (316)
277 PRK08072 nicotinate-nucleotide 29.3 1.5E+02 0.0032 29.3 6.3 41 122-165 189-229 (277)
278 PRK11475 DNA-binding transcrip 28.7 1.3E+02 0.0027 28.0 5.4 41 121-161 68-108 (207)
279 PRK03378 ppnK inorganic polyph 28.6 1.7E+02 0.0038 28.9 6.7 84 246-348 181-265 (292)
280 cd08608 GDPD_GDE2 Glycerophosp 28.5 72 0.0016 32.5 4.1 31 11-41 222-253 (351)
281 PRK11143 glpQ glycerophosphodi 28.2 79 0.0017 32.0 4.3 49 109-159 291-348 (355)
282 PF04203 Sortase: Sortase fami 28.1 75 0.0016 26.4 3.5 35 249-283 51-85 (128)
283 PRK03659 glutathione-regulated 28.1 3.4E+02 0.0073 29.3 9.1 69 74-151 446-518 (601)
284 PF06938 DUF1285: Protein of u 27.9 2.7E+02 0.0059 25.3 7.2 37 280-316 46-84 (148)
285 COG1607 Acyl-CoA hydrolase [Li 27.5 1.9E+02 0.0041 26.6 6.2 76 251-341 62-137 (157)
286 COG0469 PykF Pyruvate kinase [ 27.5 50 0.0011 35.3 2.8 135 19-166 175-336 (477)
287 PF01959 DHQS: 3-dehydroquinat 27.5 38 0.00082 34.9 1.9 31 134-164 15-45 (354)
288 PF01053 Cys_Met_Meta_PP: Cys/ 27.3 54 0.0012 33.5 3.0 117 24-146 62-194 (386)
289 cd03702 IF2_mtIF2_II This fami 27.0 3.7E+02 0.0081 22.4 7.5 22 290-311 4-25 (95)
290 PRK01185 ppnK inorganic polyph 26.7 2.2E+02 0.0049 27.9 7.0 85 246-349 163-247 (271)
291 PRK08883 ribulose-phosphate 3- 26.6 2.2E+02 0.0048 26.9 6.7 127 22-165 71-215 (220)
292 PRK07226 fructose-bisphosphate 26.6 1.6E+02 0.0035 28.2 5.9 70 94-167 173-253 (267)
293 PRK11083 DNA-binding response 26.5 2.1E+02 0.0045 24.6 6.1 40 121-161 75-114 (228)
294 PRK04539 ppnK inorganic polyph 26.5 2.1E+02 0.0045 28.5 6.8 85 246-349 186-270 (296)
295 PF14031 D-ser_dehydrat: Putat 26.4 3.7E+02 0.008 22.1 7.4 63 183-268 6-76 (94)
296 cd06202 Nitric_oxide_synthase 26.3 53 0.0011 33.5 2.7 63 227-294 172-254 (406)
297 TIGR01387 cztR_silR_copR heavy 26.2 2.5E+02 0.0055 23.8 6.5 66 94-161 42-109 (218)
298 cd00452 KDPG_aldolase KDPG and 26.0 1.9E+02 0.0041 26.1 6.0 79 75-159 8-91 (190)
299 PRK13957 indole-3-glycerol-pho 25.8 6E+02 0.013 24.9 9.7 111 21-157 113-241 (247)
300 COG0159 TrpA Tryptophan syntha 25.7 4.1E+02 0.009 26.5 8.6 115 22-153 112-235 (265)
301 PLN03115 ferredoxin--NADP(+) r 25.7 43 0.00094 34.1 2.0 41 250-294 183-223 (367)
302 cd00381 IMPDH IMPDH: The catal 25.5 82 0.0018 31.4 3.8 65 82-150 93-162 (325)
303 TIGR03572 WbuZ glycosyl amidat 25.5 3.4E+02 0.0073 25.0 7.6 135 14-152 76-228 (232)
304 PRK06354 pyruvate kinase; Prov 25.5 1.7E+02 0.0037 32.1 6.4 62 94-156 191-254 (590)
305 PRK04980 hypothetical protein; 25.5 54 0.0012 28.2 2.2 23 332-354 29-51 (102)
306 PTZ00314 inosine-5'-monophosph 25.3 1.6E+02 0.0034 31.4 6.0 66 81-150 239-309 (495)
307 cd02810 DHOD_DHPD_FMN Dihydroo 25.3 5.7E+02 0.012 24.2 9.3 135 18-152 19-197 (289)
308 PRK07455 keto-hydroxyglutarate 25.2 4.3E+02 0.0093 24.2 8.2 77 76-158 17-98 (187)
309 cd08561 GDPD_cytoplasmic_ScUgp 25.2 1.3E+02 0.0029 27.9 4.9 44 111-159 202-246 (249)
310 PRK04132 replication factor C 24.9 1.6E+02 0.0035 33.7 6.3 72 262-344 89-162 (846)
311 PF03060 NMO: Nitronate monoox 24.4 3E+02 0.0065 27.3 7.5 75 74-153 138-221 (330)
312 cd04451 S1_IF1 S1_IF1: Transla 24.3 2.5E+02 0.0055 21.1 5.5 45 206-268 4-50 (64)
313 PRK10676 DNA-binding transcrip 24.0 6.7E+02 0.014 24.3 10.3 102 169-270 121-253 (263)
314 PRK02645 ppnK inorganic polyph 23.9 2.3E+02 0.005 28.0 6.5 84 246-348 184-269 (305)
315 cd06182 CYPOR_like NADPH cytoc 23.8 81 0.0018 30.1 3.3 41 250-294 83-123 (267)
316 PRK07609 CDP-6-deoxy-delta-3,4 23.8 70 0.0015 31.1 2.9 97 178-294 103-212 (339)
317 TIGR00219 mreC rod shape-deter 23.7 7.1E+02 0.015 24.5 11.0 119 156-283 98-241 (283)
318 TIGR03689 pup_AAA proteasome A 23.6 2.3E+02 0.0051 30.5 6.9 28 229-267 64-91 (512)
319 TIGR03787 marine_sort_RR prote 23.6 1.3E+02 0.0028 26.1 4.3 39 122-161 75-113 (227)
320 cd03174 DRE_TIM_metallolyase D 23.5 1.6E+02 0.0035 27.1 5.2 92 111-206 54-176 (265)
321 TIGR01304 IMP_DH_rel_2 IMP deh 23.5 1.2E+02 0.0025 31.3 4.5 51 93-151 154-216 (369)
322 PTZ00327 eukaryotic translatio 23.4 6.4E+02 0.014 26.7 10.0 20 180-199 305-331 (460)
323 PRK05581 ribulose-phosphate 3- 23.3 1.9E+02 0.004 26.1 5.4 28 14-41 65-93 (220)
324 cd08606 GDPD_YPL110cp_fungi Gl 23.3 1.1E+02 0.0024 29.1 4.2 44 112-160 236-282 (286)
325 PLN02929 NADH kinase 23.2 1.1E+02 0.0024 30.7 4.2 84 246-348 201-289 (301)
326 PLN02252 nitrate reductase [NA 23.2 3.4E+02 0.0074 31.2 8.5 110 178-294 635-766 (888)
327 cd08601 GDPD_SaGlpQ_like Glyce 23.0 1.5E+02 0.0033 27.7 4.9 44 111-159 208-252 (256)
328 PRK04885 ppnK inorganic polyph 22.9 2.7E+02 0.0059 27.2 6.7 81 246-348 153-240 (265)
329 TIGR03684 arCOG00985 arCOG0415 22.8 1.2E+02 0.0027 26.6 4.1 53 235-290 72-130 (150)
330 COG1064 AdhP Zn-dependent alco 22.7 7E+02 0.015 25.7 9.8 122 14-159 192-318 (339)
331 PRK09836 DNA-binding transcrip 22.7 2.4E+02 0.0053 24.5 5.9 67 94-162 44-112 (227)
332 PLN02363 phosphoribosylanthran 22.6 7.2E+02 0.016 24.3 9.6 113 20-153 55-178 (256)
333 PF03061 4HBT: Thioesterase su 22.5 1.1E+02 0.0025 22.2 3.2 30 250-284 35-64 (79)
334 COG2871 NqrF Na+-transporting 22.4 66 0.0014 33.1 2.5 54 230-296 232-285 (410)
335 PLN02623 pyruvate kinase 22.3 1.1E+02 0.0023 33.7 4.1 61 94-156 291-353 (581)
336 PRK08187 pyruvate kinase; Vali 22.3 2.2E+02 0.0049 30.5 6.5 136 20-167 313-475 (493)
337 PRK11107 hybrid sensory histid 22.3 6.3E+02 0.014 27.5 9.9 137 20-161 616-780 (919)
338 PRK08558 adenine phosphoribosy 22.3 82 0.0018 30.2 3.0 35 243-277 153-194 (238)
339 PLN02495 oxidoreductase, actin 22.2 2.3E+02 0.0049 29.4 6.3 26 15-40 24-53 (385)
340 PRK02615 thiamine-phosphate py 22.0 4.1E+02 0.009 27.2 8.1 101 22-150 160-266 (347)
341 PF09845 DUF2072: Zn-ribbon co 22.0 70 0.0015 28.9 2.3 38 307-350 82-119 (131)
342 PRK14114 1-(5-phosphoribosyl)- 21.9 6.9E+02 0.015 23.9 9.2 103 55-163 4-117 (241)
343 PRK05967 cystathionine beta-ly 21.9 43 0.00093 34.3 1.1 117 26-149 73-205 (395)
344 PRK04128 1-(5-phosphoribosyl)- 21.8 3.3E+02 0.0071 25.8 6.9 71 80-155 30-106 (228)
345 KOG0257 Kynurenine aminotransf 21.7 92 0.002 33.0 3.4 80 78-161 187-308 (420)
346 TIGR00995 3a0901s06TIC22 chlor 21.7 64 0.0014 32.1 2.2 61 57-120 181-242 (270)
347 TIGR03404 bicupin_oxalic bicup 21.6 6.2E+02 0.013 25.9 9.3 100 232-354 211-310 (367)
348 PRK07315 fructose-bisphosphate 21.6 2.3E+02 0.0049 28.2 6.0 136 15-154 80-235 (293)
349 TIGR01462 greA transcription e 21.6 2.2E+02 0.0047 25.2 5.4 40 312-352 98-145 (151)
350 PRK05096 guanosine 5'-monophos 21.5 78 0.0017 32.7 2.8 69 81-149 106-177 (346)
351 TIGR00451 unchar_dom_2 unchara 21.5 1.4E+02 0.003 24.8 3.9 55 233-290 31-91 (107)
352 cd02786 MopB_CT_3 The MopB_CT_ 21.5 1.5E+02 0.0032 24.1 4.0 23 258-284 44-66 (116)
353 PRK13914 invasion associated s 21.4 64 0.0014 34.6 2.3 32 326-357 418-449 (481)
354 TIGR02798 ligK_PcmE 4-carboxy- 21.4 64 0.0014 30.9 2.1 43 239-282 50-95 (222)
355 CHL00162 thiG thiamin biosynth 21.2 1.1E+02 0.0024 30.6 3.7 33 124-159 194-231 (267)
356 TIGR00735 hisF imidazoleglycer 21.1 5E+02 0.011 24.6 8.0 103 57-165 9-120 (254)
357 COG1385 Uncharacterized protei 21.1 1.2E+02 0.0027 29.3 4.0 56 233-290 5-63 (246)
358 cd02778 MopB_CT_Thiosulfate-R- 21.0 1.4E+02 0.003 24.5 3.8 55 218-284 11-65 (123)
359 TIGR01303 IMP_DH_rel_1 IMP deh 20.8 72 0.0016 33.8 2.5 65 82-149 224-292 (475)
360 PF05690 ThiG: Thiazole biosyn 20.8 62 0.0013 32.0 1.8 45 110-158 167-216 (247)
361 PRK06247 pyruvate kinase; Prov 20.7 2.4E+02 0.0051 30.3 6.2 58 94-156 186-245 (476)
362 PTZ00141 elongation factor 1- 20.7 3.6E+02 0.0078 28.1 7.5 49 180-237 275-330 (446)
363 PRK10610 chemotaxis regulatory 20.4 2.9E+02 0.0062 20.3 5.1 29 132-160 90-118 (129)
364 PRK02649 ppnK inorganic polyph 20.4 2.5E+02 0.0054 28.0 6.1 84 245-347 185-268 (305)
365 PRK02155 ppnK NAD(+)/NADH kina 20.4 2.8E+02 0.0062 27.3 6.4 85 246-349 181-265 (291)
366 TIGR03815 CpaE_hom_Actino heli 20.4 1.9E+02 0.0041 28.1 5.1 63 94-161 19-81 (322)
367 PRK10529 DNA-binding transcrip 20.4 1.7E+02 0.0036 25.4 4.3 40 122-162 73-112 (225)
368 PF11303 DUF3105: Protein of u 20.3 1.4E+02 0.003 26.5 3.8 34 134-167 40-74 (130)
369 PRK10766 DNA-binding transcrip 20.2 1.5E+02 0.0033 25.6 4.0 38 123-161 75-112 (221)
370 PF03102 NeuB: NeuB family; I 20.1 3.4E+02 0.0074 26.3 6.7 75 73-150 70-145 (241)
371 PRK15479 transcriptional regul 20.0 3.3E+02 0.0071 23.2 6.0 40 122-162 73-112 (221)
No 1
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=100.00 E-value=3.4e-136 Score=999.67 Aligned_cols=340 Identities=48% Similarity=0.790 Sum_probs=324.9
Q ss_pred cEEEE-----EeCchhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeee---cCCc------cccCCCCeeEEEEE
Q 017962 13 KRVWI-----WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFI---KEGE------VYDSGDRRVGSIIE 78 (363)
Q Consensus 13 K~vWv-----w~~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~---~~g~------~~~~~gk~v~~~~~ 78 (363)
|++|| |+++|++||+|||||||+|+|++++.+++++|+++.++.+..- +++. .++..|+.++.|++
T Consensus 1 K~~Wi~~~~~w~~~k~~vt~AlEsGvd~vv~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~ 80 (354)
T PF01959_consen 1 KEVWIDADGPWEERKEVVTAALESGVDGVVVDDEDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVE 80 (354)
T ss_pred CeEEEEcCCChhhHHHHHHHHHHcCCCEEEECHhHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEE
Confidence 79999 8888999999999999999999999999999999999886332 2232 33578999999999
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHH
Q 017962 79 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAV 158 (363)
Q Consensus 79 v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei 158 (363)
|.++++++.++.+.+..+|+|++++||||||||||||+||+++++||+.++|++||+++|++||+|+|||+|+|+|++++
T Consensus 81 i~~~~~~~~a~~~~~~~~~~iv~~~Dw~iIPlEnliA~~~~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei 160 (354)
T PF01959_consen 81 ITDKEDEEEACELAKRADYVIVEFRDWTIIPLENLIAALQGSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEI 160 (354)
T ss_pred ECCHHHHHHHHHHhccCCeEEEEcCCCcEecHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHH
Confidence 99999999999888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee
Q 017962 159 LALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN 238 (363)
Q Consensus 159 ~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVN 238 (363)
++++++++. .++++++|++||||+|+|+||||||||||||+|+|||||||||||+|||||||||++||||++||||||
T Consensus 161 ~~~~~~~~~--~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVN 238 (354)
T PF01959_consen 161 KALVALLKE--RSQEKLELVPATVTRVEPVGMGDRVCVDTCSLLRPGEGMLVGSSSSGLFLVHSETHESPYVASRPFRVN 238 (354)
T ss_pred HHHHHHHhh--ccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCCeEEEcccCceEEEEEeccccCCCCCCCCceEe
Confidence 999999864 266789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEec
Q 017962 239 AGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVS 318 (363)
Q Consensus 239 AGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~ 318 (363)
|||||||+++|||||+|||||+|||+||+||++|++|+++|||||||+|||+||||++ +|+++|+||||||||||++
T Consensus 239 AGaVHaYv~~pg~kT~YLSEL~sG~~VlvVd~~G~tR~~~VGRvKIE~RPLllIeA~~---~g~~~svilQnaetIRlv~ 315 (354)
T PF01959_consen 239 AGAVHAYVLMPGGKTRYLSELRSGDEVLVVDADGRTRTAIVGRVKIERRPLLLIEAEA---DGKRISVILQNAETIRLVG 315 (354)
T ss_pred cCcceeEEEcCCCceeehhhhcCCCEEEEEeCCCCEEEEEeeEEEEeecceEEEEEEe---CCeEEEEEEecCcEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999 6999999999999999999
Q ss_pred CCCCCCCCCceeeeeecCCCCEEEEEecCCCcccceeeeeEEeeC
Q 017962 319 PCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQEFIVEN 363 (363)
Q Consensus 319 p~~~~~~~g~~vsVt~Lk~GD~VL~~~~~~gRHfG~~I~E~I~Ek 363 (363)
|+ |+|+|||+|||||+||+|++++||||||+|+|||+||
T Consensus 316 p~------G~~vsVt~Lk~GD~vL~~~~~~~RHfG~~I~E~I~Ek 354 (354)
T PF01959_consen 316 PD------GEPVSVTELKPGDEVLVYLEEAGRHFGMKIEEFIIEK 354 (354)
T ss_pred CC------CCEeeeeecCCCCEEEEEecCCCcccceEeeeEEecC
Confidence 98 8999999999999999999999999999999999998
No 2
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=100.00 E-value=5.7e-136 Score=994.53 Aligned_cols=336 Identities=44% Similarity=0.687 Sum_probs=320.0
Q ss_pred CcEEEEEeCc-----hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCC---ccccCCCCeeEEEEEecChh
Q 017962 12 PKRVWIWTES-----KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEG---EVYDSGDRRVGSIIEVSTPQ 83 (363)
Q Consensus 12 ~K~vWvw~~~-----K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g---~~~~~~gk~v~~~~~v~~~e 83 (363)
+|++|||.++ |++||+|||||||+|+|++++++.+++|+++ ++++.+++ ..++.++++++.|++|.+++
T Consensus 1 mK~vWi~~~~~~~~~k~~vt~AlEsGv~~vvv~~~~~~~v~~lg~i---~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~ 77 (344)
T PRK02290 1 MKFVWIKARPDWEERKEVVTTALESGVDGVVVDEEDVERVRELGRI---KVAADDPDADAVVISGSAGEDGAYVEIRDKE 77 (344)
T ss_pred CceEEEEcCCCchhHHHHHHHHHHcCCCEEEECHHHhHHHHhhCCe---eEEEEcCCcchhhhcccCCceEEEEEECCHH
Confidence 6999999977 9999999999999999999767666666666 55555555 34778899999999999999
Q ss_pred hhhhhccccCCCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017962 84 ELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 163 (363)
Q Consensus 84 ~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~ 163 (363)
+++.++.+.+.++++|+.++||||||||||||+| +++++||+.++|++||+++|++||+|+|||+|+|+|+++|+++++
T Consensus 78 ~e~~a~~~~~~~~~viv~~~dW~iIPlEnlIA~~-~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~ 156 (344)
T PRK02290 78 DEEFAAELAKEVDYVIVEGRDWTIIPLENLIADL-GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVA 156 (344)
T ss_pred HHHHHHHhhccCCEEEEECCCCcEecHHHHHhhh-cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHH
Confidence 9999999998899999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCce
Q 017962 164 YFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVH 243 (363)
Q Consensus 164 ~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVNAGaVH 243 (363)
+++. ++++++|++||||+|+|+||||||||||||||+|||||||||||+|||||||||++||||++|||||||||||
T Consensus 157 ~~~~---~~~~l~L~~a~Vt~V~~vG~GdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVNAGaVh 233 (344)
T PRK02290 157 LIEE---AREKLELVPATVTRVEPVGMGDRVCVDTCSLMEEGEGMLVGSSSRGMFLVHAETEENPYVASRPFRVNAGAVH 233 (344)
T ss_pred HHhc---cCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCceEEEcccCCcEEEEecccccCCCccCCCeeEecCcce
Confidence 9854 7889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCC
Q 017962 244 AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGT 323 (363)
Q Consensus 244 aYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~p~~~~ 323 (363)
||+++|||||+|||||+|||+||+||++|++|+++|||||||+|||+||||++ +|+++++||||||||||++|+
T Consensus 234 aYv~~pgg~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKIE~RPL~lIeAe~---~g~~~~viLQnaetIrlv~~d--- 307 (344)
T PRK02290 234 AYVRVPGDKTRYLSELRSGDEVLVVDADGNTREAIVGRVKIEKRPLLLIEAEY---GGKRIRTILQNAETIRLVTPD--- 307 (344)
T ss_pred eEEEcCCCcchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEEeeccEEEEEEEe---CCeEEEEEEecCcEEEEECCC---
Confidence 99999999999999999999999999999999999999999999999999999 699999999999999999999
Q ss_pred CCCCceeeeeecCCCCEEEEEecCCCcccceeeeeEEeeC
Q 017962 324 GEQEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQEFIVEN 363 (363)
Q Consensus 324 ~~~g~~vsVt~Lk~GD~VL~~~~~~gRHfG~~I~E~I~Ek 363 (363)
|+|+|||+|||||+||+|++++||||||+|+|||+||
T Consensus 308 ---G~~vsVt~Lk~GD~VL~~~~~~~RHfG~~i~E~IiEk 344 (344)
T PRK02290 308 ---GKPVSVVDLKPGDEVLGYLEEAARHFGMAIEETIIEK 344 (344)
T ss_pred ---CCEeeeeecCCCCEEEEEecCCcccccceeeeEEeeC
Confidence 7899999999999999999999999999999999997
No 3
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-132 Score=953.13 Aligned_cols=342 Identities=44% Similarity=0.713 Sum_probs=323.7
Q ss_pred CCcEEEE------EeCchhHHHHHHHhCccEEEEcccchhhhhhccceeeeee-----eee--cCC--------------
Q 017962 11 KPKRVWI------WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP-----LFI--KEG-------------- 63 (363)
Q Consensus 11 ~~K~vWv------w~~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~-----l~~--~~g-------------- 63 (363)
.+|++|+ |++.|..+|+|||+|+|.+++++++.+.+++||++.++.| +++ ++|
T Consensus 1 ~mK~vWl~a~~~~WeekK~~it~alEaG~d~vvv~~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~ 80 (376)
T COG1465 1 MMKEVWLLAEDESWEEKKKRITAALEAGVDVVVVRPADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISG 80 (376)
T ss_pred CcceEEEEcCCcchhHhhHHHHHHHhcCCCEEEECHHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccc
Confidence 4799999 7788999999999999999999999999999999999988 333 443
Q ss_pred -------ccccCCCCeeEEEEEecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHH
Q 017962 64 -------EVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQI 136 (363)
Q Consensus 64 -------~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~ 136 (363)
..+...|+.++.|+.|.|+++++.++.....++|+|+.++||||||||||||++|+.+++|||.|+|++||++
T Consensus 81 s~di~~~~~~~~~G~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWkiIPLENlIA~l~~e~~kliA~V~saeEA~v 160 (376)
T COG1465 81 SADIEALRELMDRGHEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKIIPLENLIADLQHEKVKLIAGVKSAEEARV 160 (376)
T ss_pred cccHHHHHHhhhcCcceEEEEEEcCccchHHHHhhccccceEEEEcCcceEeeHHHHHHHhhccceEEEEEeccHHHHHH
Confidence 2345679999999999999996555555555899999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCeEEEecCCHHHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCce
Q 017962 137 FLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARG 216 (363)
Q Consensus 137 ~~~~LE~G~dGVvl~~~d~~ei~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGmLVGs~s~g 216 (363)
||++||+|+|||+|+++|+++|+++.++++. .++++++|++|+||+|+|+|+||||||||||||.+||||||||+|+|
T Consensus 161 A~eTLE~GaDgVll~~~d~~eIk~~~~~~~e--~~~E~~eL~~a~vt~ieplG~gDRVCVDTcsLm~~gEGMLVGs~s~g 238 (376)
T COG1465 161 ALETLEKGADGVLLDSDDPEEIKKTAEVVEE--AESERLELVTATVTEIEPLGSGDRVCVDTCSLMTRGEGMLVGSQSRG 238 (376)
T ss_pred HHHHHhccCceEEeCCCCHHHHHHHHHHHHH--hccceeEEEEEEEEEEeecCCCceEEEeeecccccCCceEeecccCc
Confidence 9999999999999999999999999998854 57789999999999999999999999999999999999999999999
Q ss_pred EEEEeeccccCCCCCCCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEe
Q 017962 217 LFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKT 296 (363)
Q Consensus 217 lfLVhsEt~e~~Yva~RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~ 296 (363)
||||||||.+||||++|||||||||||||+++|||||+|||||++||+|++||.+|++|.++|||+|||+|||+||||++
T Consensus 239 mFlVhsEs~espYVAaRPFRVNAG~VhaYi~vPg~kTkYLaEL~aGDeV~iVD~dGr~R~aiVGRvKIErRPl~lIeAey 318 (376)
T COG1465 239 MFLVHSESEESPYVAARPFRVNAGAVHAYIRVPGGKTKYLAELKAGDEVLIVDFDGRTRSAIVGRVKIERRPLMLIEAEY 318 (376)
T ss_pred EEEEecccccCcccccCceeecccceeEEEEcCCCceEEhhhhcCCCeEEEEecCCceeEEEEEEEEeecCceEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEeEecceEEEecCCCCCCCCCceeeeeecCCCCEEEEEecCCCcccceeeeeEEeeC
Q 017962 297 NSGDQTLYGIILQNAETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQEFIVEN 363 (363)
Q Consensus 297 ~~~~g~~~sviLQnAETIrLv~p~~~~~~~g~~vsVt~Lk~GD~VL~~~~~~gRHfG~~I~E~I~Ek 363 (363)
+|.++++||||||||||++|+ |+|+||++|||||+||+|+++.||||||+|+|+|+||
T Consensus 319 ---~g~~i~tiLQNAETIkLv~~d------G~pvSV~eLk~GD~vlv~~ee~aRHFGm~i~EtIIEk 376 (376)
T COG1465 319 ---EGVEISTILQNAETIKLVNPD------GEPVSVAELKPGDEVLVYLEEKARHFGMAIEETIIEK 376 (376)
T ss_pred ---cCcEEEEEeccceeEEEEcCC------CcEeeeEecCCCCEEEEEehhccchhchhhhheeccC
Confidence 699999999999999999999 8999999999999999999999999999999999997
No 4
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=97.22 E-value=0.0017 Score=50.95 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=51.0
Q ss_pred eEEEecCCceeeeeeccCCCeEEEEcCC-CCeeEEe-eeeEEEe-ccceeEEEEEecCCCCeEEEEEeEecceEEEecCC
Q 017962 244 AYVLVPGGKTCYLSELKSGKEVIVVDQK-GRQRTAV-VGRVKIE-SRPLILVEAKTNSGDQTLYGIILQNAETVALVSPC 320 (363)
Q Consensus 244 aYv~~pggkT~YLSEL~sG~eVLvVd~~-G~~R~~~-VGRvKIE-~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~p~ 320 (363)
+.|++++|....+++|+.||+|+..|.. ++.+... +-..+-+ ..||+.|..+. |..+.+--++. + ++..+
T Consensus 7 t~V~~~~gg~~~i~~l~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----g~~i~~T~~H~--~-~~~~~ 79 (100)
T smart00306 7 TLVLTEDGGIKKIEELEEGDKVLALDEGTLKYSPVKVFLVREPKGEKKFYRIKTEN----GREITLTPDHL--L-LVRDG 79 (100)
T ss_pred CEEEcCCCCEEEHHHcCCCCEEEEecCCCcEEEEEEEEEEEcCCcceeEEEEEECC----CCEEEECCCCE--E-EEecC
Confidence 5789999999999999999999999973 2222111 1111111 23444444321 33222221111 1 23222
Q ss_pred CCCCCCCceeeeeecCCCCEEEEE
Q 017962 321 KGTGEQEKAIPVTSLKVGDEVLLR 344 (363)
Q Consensus 321 ~~~~~~g~~vsVt~Lk~GD~VL~~ 344 (363)
+ ....+..-+||+||.|++.
T Consensus 80 ~----~~~w~~a~~l~~gd~v~~~ 99 (100)
T smart00306 80 G----KLVWVFASELKPGDYVLVP 99 (100)
T ss_pred C----cEEEEEHHHCCCCCEEEec
Confidence 0 0237889999999999863
No 5
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=97.18 E-value=0.0023 Score=60.37 Aligned_cols=98 Identities=23% Similarity=0.330 Sum_probs=52.8
Q ss_pred CceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEee----eeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEE
Q 017962 241 PVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVV----GRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVAL 316 (363)
Q Consensus 241 aVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~V----GRvKIE~RPLllIeAe~~~~~g~~~sviLQnAETIrL 316 (363)
|-.|.|.+++|.++-++||+.||+||++|.+|+..-..| -|-.-.++.++-||.+ +|+. +.|=.+-=|-.
T Consensus 14 pg~a~V~~~~G~~k~m~~L~iGD~Vla~d~~G~~~yS~V~~flhr~~~~~~~F~~i~te----~g~~--l~LTp~HLI~v 87 (217)
T PF01079_consen 14 PGDATVTLEDGGRKRMSDLKIGDRVLAVDSDGKLVYSPVIMFLHRDPEQRAEFVVIETE----DGRS--LTLTPNHLIFV 87 (217)
T ss_dssp -TT-EEEBTTS-EEEGGG--TT-EEEEE-TTS-EEEEEEEEEEEEEEEEEEEEEEEEET----TS-E--EEE-TT-EEEE
T ss_pred CCCCEEEeCCCCEeEHHHCCCCCEEEEecCCCcEEEEeEEEEeccCccccEEEEEEEcC----CCCe--EEecCCcEEEE
Confidence 446889999999999999999999999999998654322 3334455667777653 4543 22222222333
Q ss_pred ecCCCCCCCCCceeeeeecCCCCEEEEE
Q 017962 317 VSPCKGTGEQEKAIPVTSLKVGDEVLLR 344 (363)
Q Consensus 317 v~p~~~~~~~g~~vsVt~Lk~GD~VL~~ 344 (363)
...+.......+++--.++++||.|++.
T Consensus 88 ~~~~~~~~~~~~~vfA~~V~~Gd~v~~~ 115 (217)
T PF01079_consen 88 ADCNGSESSNFRAVFASDVRVGDCVLVS 115 (217)
T ss_dssp EETTTTEE---EEEEGGG--TT-EEEEE
T ss_pred ecCCCCcccccceeehhhCCCCCEEEEE
Confidence 3332111111256888899999999993
No 6
>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.
Probab=93.71 E-value=0.38 Score=39.76 Aligned_cols=89 Identities=21% Similarity=0.277 Sum_probs=54.1
Q ss_pred EEEecCCceeeeeeccC--CCeEEEEcCCCCeeEEeeeeE-EE-eccceeEEEEEecCCCCeEEEEEeEecceEEEecCC
Q 017962 245 YVLVPGGKTCYLSELKS--GKEVIVVDQKGRQRTAVVGRV-KI-ESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPC 320 (363)
Q Consensus 245 Yv~~pggkT~YLSEL~s--G~eVLvVd~~G~~R~~~VGRv-KI-E~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~p~ 320 (363)
=|.+++++..-+.||.. |++|+..|..|+.+...|-.+ +- ...||+.|..+. |..+.+--++ ==++..+
T Consensus 7 ~V~~~d~~~~~i~~l~~~~g~~V~~~d~~~~~~~~~v~~~~~~~~~~~~~~i~~~~----g~~l~~T~~H---~~~~~~~ 79 (136)
T cd00081 7 LVLLEDGGRKKIEELVEKKGDKVLALDETGKLVFSKVLKVLRRDYEKKFYKIKTES----GREITLTPDH---LLFVLED 79 (136)
T ss_pred EEEeccCcEEEhHHhhhccCCEEEEECCCCCEEEEEeeEEEEEcCCCcEEEEEECC----CcEEEEcCCC---EEEEEeC
Confidence 46788888899999999 999999999776554333221 11 345555555532 3333222111 1111111
Q ss_pred CCCCCCCceeeeeecCCCCEEEEE
Q 017962 321 KGTGEQEKAIPVTSLKVGDEVLLR 344 (363)
Q Consensus 321 ~~~~~~g~~vsVt~Lk~GD~VL~~ 344 (363)
+ ....+...+|++||.|+..
T Consensus 80 ~----~~~~~~a~~l~~gd~l~~~ 99 (136)
T cd00081 80 G----ELKWVFASDLKPGDYVLVP 99 (136)
T ss_pred C----eEEEEEHHHCCCCCEEEEc
Confidence 0 1356778899999999986
No 7
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=92.25 E-value=0.77 Score=43.85 Aligned_cols=90 Identities=9% Similarity=0.059 Sum_probs=55.4
Q ss_pred eEEEEEecChhhhhhhccccCCCceEEEeCCCCeeee---hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 017962 73 VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIP---AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 149 (363)
Q Consensus 73 v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIP---lEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVv 149 (363)
+++++.+.++.-.+.++. . ..|+++++..+=. +- +++++.+.+..+..++..+++.+.. ....+|+.|+|||+
T Consensus 14 ~g~~~~~~~p~~~e~~~~-~-g~D~v~iDlEH~~-~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~-~i~~~Ld~Ga~gIi 89 (249)
T TIGR02311 14 IGLWLGLADPYAAEICAG-A-GFDWLLIDGEHAP-NDVRTILSQLQALAPYPSSPVVRPAIGDPV-LIKQLLDIGAQTLL 89 (249)
T ss_pred EEEEEeCCCcHHHHHHHh-c-CCCEEEEeccCCC-CCHHHHHHHHHHHHhcCCCcEEECCCCCHH-HHHHHhCCCCCEEE
Confidence 455555556555444333 2 2666666544211 12 3345555444455778888777665 56778999999999
Q ss_pred Ee-cCCHHHHHHHHHhhc
Q 017962 150 LK-VEDVKAVLALKEYFD 166 (363)
Q Consensus 150 l~-~~d~~ei~~l~~~~~ 166 (363)
++ .+++++++++.+.+.
T Consensus 90 vP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 90 VPMIETAEQAEAAVAATR 107 (249)
T ss_pred ecCcCCHHHHHHHHHHcC
Confidence 86 567888888777663
No 8
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=90.86 E-value=2.5 Score=38.60 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=66.2
Q ss_pred CchhHHHHHHHhCccEEEEcccch--hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCce
Q 017962 20 ESKQVMTAAVERGWNTFVFLSENQ--QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 97 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~~~--~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 97 (363)
.+...+..+++.|+|.+++...+. +..+++-+-. ..-|.. ..+.+.+.++++++... .+++
T Consensus 82 ~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~-------------~~~g~~--~~v~v~~~~e~~~~~~~--g~~~ 144 (217)
T cd00331 82 IDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA-------------RELGME--VLVEVHDEEELERALAL--GAKI 144 (217)
T ss_pred cCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH-------------HHcCCe--EEEEECCHHHHHHHHHc--CCCE
Confidence 345689999999999998654221 2222221111 011322 35567888887766543 5788
Q ss_pred EEEeCCCCeeee--h---hhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 98 IVIDLPDWQVIP--A---ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 98 vvv~~~dW~iIP--l---EnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
+.+..+|=+..+ + .++.+.+. .+..+++ .++++++++.++ +.|+|||++-+
T Consensus 145 i~~t~~~~~~~~~~~~~~~~l~~~~~-~~~pvia~gGI~s~edi~~~~---~~Ga~gvivGs 202 (217)
T cd00331 145 IGINNRDLKTFEVDLNTTERLAPLIP-KDVILVSESGISTPEDVKRLA---EAGADAVLIGE 202 (217)
T ss_pred EEEeCCCccccCcCHHHHHHHHHhCC-CCCEEEEEcCCCCHHHHHHHH---HcCCCEEEECH
Confidence 888866644333 3 33333321 2335554 678889988665 55999998754
No 9
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=89.31 E-value=1.4 Score=39.92 Aligned_cols=111 Identities=20% Similarity=0.157 Sum_probs=71.4
Q ss_pred chhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEE
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 100 (363)
-++++.++++.|++.+-++-.+..-.+.+..+....| +..++ -..|.+.++++.+... .++.++.
T Consensus 18 ~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~------------~~~iG-ag~v~~~~~~~~a~~~--Ga~~i~~ 82 (190)
T cd00452 18 ALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFP------------EALIG-AGTVLTPEQADAAIAA--GAQFIVS 82 (190)
T ss_pred HHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC------------CCEEE-EEeCCCHHHHHHHHHc--CCCEEEc
Confidence 4688999999999999987654332222333322111 12222 2357788887665543 4677765
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017962 101 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 155 (363)
Q Consensus 101 ~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~ 155 (363)
-..| +.++...+..+..++..+.|.+||+.+ ++.|+|-|-+.|.++
T Consensus 83 p~~~------~~~~~~~~~~~~~~i~gv~t~~e~~~A---~~~Gad~i~~~p~~~ 128 (190)
T cd00452 83 PGLD------PEVVKAANRAGIPLLPGVATPTEIMQA---LELGADIVKLFPAEA 128 (190)
T ss_pred CCCC------HHHHHHHHHcCCcEECCcCCHHHHHHH---HHCCCCEEEEcCCcc
Confidence 4333 345555555566788999999998766 578999999987664
No 10
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=89.15 E-value=1.5 Score=42.01 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=69.9
Q ss_pred CeeEEEEEecChhhhhhhccccCCCceEEEeCC----CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 017962 71 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP----DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 146 (363)
Q Consensus 71 k~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~----dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~d 146 (363)
..++++..+.+|.-.|.++. . .-|+|+|+.. ||. -+++++.+++..+...+..+.+.+. ..+-.+|+.|++
T Consensus 12 ~~~G~~~~~~sp~~~e~~a~-~-G~D~v~iD~EHg~~~~~--~~~~~~~a~~~~g~~~~VRvp~~~~-~~i~r~LD~Ga~ 86 (249)
T TIGR03239 12 TLIGCWSALGNPITTEVLGL-A-GFDWLLLDGEHAPNDVL--TFIPQLMALKGSASAPVVRPPWNEP-VIIKRLLDIGFY 86 (249)
T ss_pred ceEEEEEcCCCcHHHHHHHh-c-CCCEEEEecccCCCCHH--HHHHHHHHHhhcCCCcEEECCCCCH-HHHHHHhcCCCC
Confidence 45788888999988666664 3 4899999765 444 4688998888888888888888754 556789999999
Q ss_pred eEEEe-cCCHHHHHHHHHhh
Q 017962 147 GIVLK-VEDVKAVLALKEYF 165 (363)
Q Consensus 147 GVvl~-~~d~~ei~~l~~~~ 165 (363)
||+++ .++.++++++.+..
T Consensus 87 gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 87 NFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred EEEecCcCCHHHHHHHHHHc
Confidence 99996 56788888777655
No 11
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=89.05 E-value=1.5 Score=42.72 Aligned_cols=92 Identities=9% Similarity=0.065 Sum_probs=70.1
Q ss_pred CeeEEEEEecChhhhhhhccccCCCceEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeE
Q 017962 71 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGI 148 (363)
Q Consensus 71 k~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~--dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGV 148 (363)
..+++++.+.++.-.|.++.. ..|+|+|+.. .+..--+++++.+++..+...+..+.+.+. ..+..+|+.|++||
T Consensus 18 ~~~G~~~~~~sp~~~E~~a~~--GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~-~~i~r~LD~GA~GI 94 (267)
T PRK10128 18 VQIGLWLSSTTSYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSK-PLIKQVLDIGAQTL 94 (267)
T ss_pred ceEEEEecCCCcHHHHHHHHc--CCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCH-HHHHHHhCCCCCee
Confidence 446888889999886666653 4899999765 333345678888888888888888887755 55578999999999
Q ss_pred EEe-cCCHHHHHHHHHhh
Q 017962 149 VLK-VEDVKAVLALKEYF 165 (363)
Q Consensus 149 vl~-~~d~~ei~~l~~~~ 165 (363)
+++ .++.++++++.+..
T Consensus 95 ivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 95 LIPMVDTAEQARQVVSAT 112 (267)
T ss_pred EecCcCCHHHHHHHHHhc
Confidence 996 46688887777655
No 12
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=87.54 E-value=2.3 Score=41.02 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=68.8
Q ss_pred CeeEEEEEecChhhhhhhccccCCCceEEEeCC----CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 017962 71 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP----DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 146 (363)
Q Consensus 71 k~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~----dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~d 146 (363)
..++++..+.++.-.|.++.. .-|+|+|+.. ||. -+++++.+++..+...+..+.+.+. ..+..+|+.|++
T Consensus 19 ~~~g~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~--~~~~~i~a~~~~g~~~lVRvp~~~~-~~i~r~LD~Ga~ 93 (256)
T PRK10558 19 VQIGCWSALANPITTEVLGLA--GFDWLVLDGEHAPNDVS--TFIPQLMALKGSASAPVVRVPTNEP-VIIKRLLDIGFY 93 (256)
T ss_pred ceEEEEEcCCCcHHHHHHHhc--CCCEEEEccccCCCCHH--HHHHHHHHHhhcCCCcEEECCCCCH-HHHHHHhCCCCC
Confidence 456888888898876665543 3899999654 444 4678888888888888999988865 455779999999
Q ss_pred eEEEe-cCCHHHHHHHHHhh
Q 017962 147 GIVLK-VEDVKAVLALKEYF 165 (363)
Q Consensus 147 GVvl~-~~d~~ei~~l~~~~ 165 (363)
||+++ .++.++++++.+..
T Consensus 94 giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 94 NFLIPFVETAEEARRAVAST 113 (256)
T ss_pred eeeecCcCCHHHHHHHHHHc
Confidence 99986 56788888776654
No 13
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=86.89 E-value=2 Score=41.34 Aligned_cols=101 Identities=16% Similarity=0.215 Sum_probs=63.2
Q ss_pred CchhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceE
Q 017962 20 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 98 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 98 (363)
.+...++.+|+.|+++|++|- ++.+.++++-+-.+..| .|++ + + . -
T Consensus 79 ~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP-----------~G~R-g----~---------------~--~ 125 (256)
T PRK10558 79 NEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPP-----------EGIR-G----V---------------S--V 125 (256)
T ss_pred CCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCC-----------CCcC-C----C---------------C--c
Confidence 356777788888888888874 34555555555555444 1111 0 0 0 0
Q ss_pred EEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhc-ccCeEEEecCCHH
Q 017962 99 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDVK 156 (363)
Q Consensus 99 vv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~-G~dGVvl~~~d~~ 156 (363)
.....+|...| ..++.. +.++.+++.+.|++-...+-+++.. |+||+.+-|.|..
T Consensus 126 ~~~~~~y~~~~--~y~~~a-n~~~~vi~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs 181 (256)
T PRK10558 126 SHRANMFGTVP--DYFAQS-NKNITVLVQIESQQGVDNVDAIAATEGVDGIFVGPSDLA 181 (256)
T ss_pred cccccccCChH--HHHHHh-ccccEEEEEECCHHHHHHHHHHhCCCCCcEEEECHHHHH
Confidence 01123444333 334433 4567899999999888888888875 8999999998765
No 14
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=85.40 E-value=9.4 Score=36.70 Aligned_cols=115 Identities=16% Similarity=0.177 Sum_probs=67.7
Q ss_pred hhHHHHHHHhCccEEEEcccc--hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEE
Q 017962 22 KQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 99 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~--~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vv 99 (363)
.-.+..|.+.|+|.+.+.... .+..+++-+.+ ..-|. -+++++.+.++++++... .++++-
T Consensus 123 ~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a-------------~~lGl--~~lvevh~~~E~~~A~~~--gadiIg 185 (260)
T PRK00278 123 PYQIYEARAAGADAILLIVAALDDEQLKELLDYA-------------HSLGL--DVLVEVHDEEELERALKL--GAPLIG 185 (260)
T ss_pred HHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHH-------------HHcCC--eEEEEeCCHHHHHHHHHc--CCCEEE
Confidence 446889999999998876432 11111111110 11133 266789999988765532 578888
Q ss_pred EeCCCCeeee-----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec-----CCHHH
Q 017962 100 IDLPDWQVIP-----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKA 157 (363)
Q Consensus 100 v~~~dW~iIP-----lEnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~-----~d~~e 157 (363)
++.+|-+.-+ .+.|+..+.+ ...+++ ...++++++.++ +.|+|||++-+ +||.+
T Consensus 186 in~rdl~~~~~d~~~~~~l~~~~p~-~~~vIaegGI~t~ed~~~~~---~~Gad~vlVGsaI~~~~dp~~ 251 (260)
T PRK00278 186 INNRNLKTFEVDLETTERLAPLIPS-DRLVVSESGIFTPEDLKRLA---KAGADAVLVGESLMRADDPGA 251 (260)
T ss_pred ECCCCcccccCCHHHHHHHHHhCCC-CCEEEEEeCCCCHHHHHHHH---HcCCCEEEECHHHcCCCCHHH
Confidence 8765543332 2444444321 224555 467888888765 56999998754 56644
No 15
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=84.42 E-value=3.5 Score=37.84 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=57.0
Q ss_pred hhHHHHHHHhCccEEEEcc---------cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc
Q 017962 22 KQVMTAAVERGWNTFVFLS---------ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 92 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~---------~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~ 92 (363)
.+.+..|.+.|++.+++.. ...+..+.+.+. | .+-..+.+.++++...+..
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~-----------------g-~~~iiv~v~t~~ea~~a~~-- 141 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEE-----------------Y-NCLLMADISTLEEALNAAK-- 141 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHH-----------------h-CCeEEEECCCHHHHHHHHH--
Confidence 3477999999999777631 112233333222 2 1123346777777544333
Q ss_pred CCCceEEEeCCCCe------eeehhhhhhcccC-CCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 93 GQAENIVIDLPDWQ------VIPAENIVASFQG-SGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 93 ~~~~~vvv~~~dW~------iIPlEnliA~~q~-~~~~l~a~--v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
..++++.+...+++ ..|--+.+.++.. .+..+++. +++.++++. +++.|+|||++-+.
T Consensus 142 ~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~---~l~~GadgV~vGsa 208 (219)
T cd04729 142 LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAK---ALELGADAVVVGSA 208 (219)
T ss_pred cCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHH---HHHCCCCEEEEchH
Confidence 24788776432221 1121234443332 23344443 455666555 45579999998753
No 16
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=84.21 E-value=3.1 Score=38.00 Aligned_cols=42 Identities=26% Similarity=0.204 Sum_probs=34.1
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 166 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~~ 166 (363)
.+|..++.|.+||+ ++|+.|+|+|+|+.-+|++++++.+.+.
T Consensus 81 ~~I~VEv~~~ee~~---ea~~~g~d~I~lD~~~~~~~~~~v~~l~ 122 (169)
T PF01729_consen 81 KKIEVEVENLEEAE---EALEAGADIIMLDNMSPEDLKEAVEELR 122 (169)
T ss_dssp SEEEEEESSHHHHH---HHHHTT-SEEEEES-CHHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHH---HHHHhCCCEEEecCcCHHHHHHHHHHHh
Confidence 35999999999876 5677999999999999999988887663
No 17
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=83.54 E-value=0.64 Score=40.39 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=10.7
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEE-EeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCC
Q 017962 246 VLVPGGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVK-IESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGT 323 (363)
Q Consensus 246 v~~pggkT~YLSEL~sG~eVLvVd~~-G~~R~~~VGRvK-IE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~p~~~~ 323 (363)
|.+++|. +=+.+++.||.||..|.. |+...-.|-++- -+...|+-|+.+ +..+ .--++|==. ..+
T Consensus 2 V~T~~G~-k~Ie~I~~GD~Vls~d~~tg~~~~~~V~~~f~~~~~~l~~i~~~-----~~~i---~~T~~HPF~-~~~--- 68 (130)
T PF07591_consen 2 VHTADGL-KPIEDIKVGDRVLSYDEETGETEYKPVTATFVRETDELVDITLE-----DETI---TTTPNHPFW-VEG--- 68 (130)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccc-cccccccccccccccccccccccccccccccccccccccccccc-----cccc---ccccccccc-cch---
Confidence 5678884 899999999999999954 555444443322 233455555442 2222 222222212 222
Q ss_pred CCCCceeeeeecCCCCEEEEE
Q 017962 324 GEQEKAIPVTSLKVGDEVLLR 344 (363)
Q Consensus 324 ~~~g~~vsVt~Lk~GD~VL~~ 344 (363)
+.=+...+||+||+++..
T Consensus 69 ---~gWv~A~~L~~GD~L~~~ 86 (130)
T PF07591_consen 69 ---KGWVEAEDLKVGDRLLTA 86 (130)
T ss_dssp ------EEGGG--TTSEEEEE
T ss_pred ---HhhhhHhhCCCCCEEEcC
Confidence 345788899999998753
No 18
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=83.17 E-value=7.1 Score=37.56 Aligned_cols=116 Identities=11% Similarity=0.143 Sum_probs=64.6
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCceEEE
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~e~~e~~~~~~~~~~~vvv 100 (363)
.+.+..+.++|++++++++.-.+...++-+. +++.|...+..+.- ++.+.+..++......-|++-
T Consensus 105 e~f~~~~~~aGvdgviipDlp~ee~~~~~~~-------------~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs 171 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADLPLEESGDLVEA-------------AKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS 171 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCChHHHHHHHHH-------------HHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE
Confidence 5789999999999999987533322222211 12334333333333 345555555555433333332
Q ss_pred e--CCCC--ee-eehhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 101 D--LPDW--QV-IPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 101 ~--~~dW--~i-IPlEnliA~~q~~-~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
. +++= +. -++.+.++.+.+. +..|+. .++|.++++. +++.|+|||++-+.
T Consensus 172 ~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~---~~~~GADgvVvGSa 229 (256)
T TIGR00262 172 RAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQ---AIDAGADGVIVGSA 229 (256)
T ss_pred CCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH---HHHcCCCEEEECHH
Confidence 1 1121 12 2456777766543 233443 3677777775 67899999999764
No 19
>PRK11479 hypothetical protein; Provisional
Probab=82.97 E-value=0.71 Score=45.55 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=34.8
Q ss_pred EEEecCCCCCCCCCceeeeeecCCCCEEEEEe------------cCCCcccceee-eeEEee
Q 017962 314 VALVSPCKGTGEQEKAIPVTSLKVGDEVLLRV------------QGAARHTGIEI-QEFIVE 362 (363)
Q Consensus 314 IrLv~p~~~~~~~g~~vsVt~Lk~GD~VL~~~------------~~~gRHfG~~I-~E~I~E 362 (363)
+++-.....+..+|++|+..+|||||-|+... ...--|+||-+ ++.++|
T Consensus 44 ~~~pr~s~~q~~~g~~Vs~~~LqpGDLVFfst~t~~S~~Ik~~T~s~~SHVgIylGdg~vIE 105 (274)
T PRK11479 44 VKFQHQSSFTEQGIKEITAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIYLGENNVAE 105 (274)
T ss_pred eecCcccHHHHhCCcccChhhCCCCCEEEEecCCccccceecccCCCCcEEEEEecCCeEEE
Confidence 44544443344568899999999999999753 23456999999 556665
No 20
>PF14890 Intein_splicing: Intein splicing domain; PDB: 1MI8_A 2CW7_A 2CW8_A.
Probab=82.94 E-value=15 Score=35.59 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=52.0
Q ss_pred eEEEecCC-ceeeeeec--cCCCeEEEEcC-CCCeeEEeeeeEEE-eccceeEEEEEecCCCCeEEEEEeEecceEEEec
Q 017962 244 AYVLVPGG-KTCYLSEL--KSGKEVIVVDQ-KGRQRTAVVGRVKI-ESRPLILVEAKTNSGDQTLYGIILQNAETVALVS 318 (363)
Q Consensus 244 aYv~~pgg-kT~YLSEL--~sG~eVLvVd~-~G~~R~~~VGRvKI-E~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~ 318 (363)
++|..|++ +-.=+.|| ..|.+|+..|. +++.+...|-+++- -.+|++.|+.+ .|+.+.+. ++| +|..
T Consensus 2 t~v~~~~~g~~~~i~ei~~~~~~~V~sl~~~~~k~~~~~v~~v~~~g~k~v~ri~t~----~GreI~~T---~~H-~~lt 73 (323)
T PF14890_consen 2 TLVVLADTGRRVTIKEILEKKDVEVLSLDEDDLKLVKRKVSRVFHNGEKPVYRIRTR----SGREIKAT---PDH-PFLT 73 (323)
T ss_dssp -EEEBTTT--EEESGCCCC-SSEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEEET----TS-EEEEE---TT--EEEE
T ss_pred cEEEeCCCCcEEehhHhhccCCCeEEEEeCCCCEEEEeeeeEEEEcCCceEEEEEeC----CCCEEEEc---CCC-cEEE
Confidence 46777766 77778888 78889999996 78888888777742 12345555553 47765543 233 3334
Q ss_pred CCCCCCCCCceeeeeecCCCCEEEEE
Q 017962 319 PCKGTGEQEKAIPVTSLKVGDEVLLR 344 (363)
Q Consensus 319 p~~~~~~~g~~vsVt~Lk~GD~VL~~ 344 (363)
+++ +++ +-+|||||.|.+.
T Consensus 74 ~~~-----wk~--~~~Lk~GD~I~v~ 92 (323)
T PF14890_consen 74 PDG-----WKR--LEELKPGDRIAVP 92 (323)
T ss_dssp CCC-----CCE--CCC--TT-EEEEE
T ss_pred ccC-----CEE--hHHhhcccccccc
Confidence 442 554 5679999999988
No 21
>PRK05826 pyruvate kinase; Provisional
Probab=82.76 E-value=4.5 Score=42.55 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=35.1
Q ss_pred hhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017962 112 NIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 156 (363)
Q Consensus 112 nliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ 156 (363)
++++.....+..|++...+.+--+-.=++++. +|||++.+.|.+
T Consensus 206 ~~l~~~~~~~~~iiakIEt~eav~nldeI~~~-~DgImIgrgDLg 249 (465)
T PRK05826 206 RLLREAGCPHAKIIAKIERAEAVDNIDEIIEA-SDGIMVARGDLG 249 (465)
T ss_pred HHHHHcCCcCceEEEEEcCHHHHHhHHHHHHH-cCEEEECcchhh
Confidence 55555433267899999999988888889998 999999998854
No 22
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=82.49 E-value=6.4 Score=36.20 Aligned_cols=92 Identities=23% Similarity=0.336 Sum_probs=60.5
Q ss_pred eEEEEEecChhhhhhhccccCCCceEEEeCCCCee---------eehhhhhhcc---cCCCceEEEEcCCHHHHH--HHH
Q 017962 73 VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQV---------IPAENIVASF---QGSGKTVFAISKTPSEAQ--IFL 138 (363)
Q Consensus 73 v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~i---------IPlEnliA~~---q~~~~~l~a~v~~~~eA~--~~~ 138 (363)
.+.|+...+++-++.+.. ...|+++++..| .+ .=+++++..+ +..+..++..+++.+... --+
T Consensus 2 s~l~vp~~~~~~~~~a~~--~g~D~vilDlEd-~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl 78 (221)
T PF03328_consen 2 SGLFVPANSPKMLEKAAA--SGADFVILDLED-GVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDL 78 (221)
T ss_dssp EEEEEESTSHHHHHHHHT--TCSSEEEEESST-TSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHh--cCCCEEEEeCcc-cCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhh
Confidence 356777778777666553 368999997776 33 2233444333 334458999999976432 112
Q ss_pred HHhhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 017962 139 EALEQGLGGIVLK-VEDVKAVLALKEYFDG 167 (363)
Q Consensus 139 ~~LE~G~dGVvl~-~~d~~ei~~l~~~~~~ 167 (363)
.+|+.|+|||+++ .+++++++++.+.+..
T Consensus 79 ~~l~~g~~gI~lP~ves~~~~~~~~~~~~~ 108 (221)
T PF03328_consen 79 EALDAGADGIVLPKVESAEDARQAVAALRY 108 (221)
T ss_dssp HHHHTTSSEEEETT--SHHHHHHHHHHHSH
T ss_pred hhcccCCCeeeccccCcHHHHHHHHHHHhh
Confidence 2999999999997 4578999888888754
No 23
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.07 E-value=2.7 Score=41.20 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=36.1
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
.+|.+++.|.+||+.+ ++.|+|.|+|+.-++++++++.+.+
T Consensus 183 ~~I~VEv~tleea~~A---~~~GaDiI~LDn~~~e~l~~~v~~~ 223 (273)
T PRK05848 183 AKIEIECESLEEAKNA---MNAGADIVMCDNMSVEEIKEVVAYR 223 (273)
T ss_pred ceEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 5799999999998765 5799999999999999998888765
No 24
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=81.76 E-value=7.1 Score=35.87 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=36.4
Q ss_pred CCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEe
Q 017962 240 GPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKT 296 (363)
Q Consensus 240 GaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~ 296 (363)
|-..=.+..-|.-|+||.+++.||+|.+-...|+.-+ .+ .+|+++|=+-+
T Consensus 49 ~~l~~~v~~~G~~s~~L~~l~~Gd~v~i~gP~G~~f~-----~~--~~~~vliAgGt 98 (233)
T cd06220 49 GPNSITVKKVGEATSALHDLKEGDKLGIRGPYGNGFE-----LV--GGKVLLIGGGI 98 (233)
T ss_pred CeEEEEEEecChHHHHHHhcCCCCEEEEECcCCCCcc-----CC--CCeEEEEecCc
Confidence 3344445556888999999999999999888887321 12 68999887643
No 25
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=81.12 E-value=1.5 Score=43.89 Aligned_cols=133 Identities=20% Similarity=0.259 Sum_probs=84.0
Q ss_pred CchhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceE
Q 017962 20 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 98 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 98 (363)
+|++.+.-|++.|+|.+-+.- .+++.+.++.++ +++.|+.+..+.+|.+++-++.+-.-+..+|-+
T Consensus 177 kD~~di~fa~~~~vD~IalSFVrsa~dV~~lr~~-------------l~~~~~~~~iiaKIE~~~~v~nl~eI~~~sDgi 243 (348)
T PF00224_consen 177 KDKEDIKFAVENGVDFIALSFVRSAEDVKELRKI-------------LGEKGKDIKIIAKIETKEAVENLDEILEASDGI 243 (348)
T ss_dssp HHHHHHHHHHHTT-SEEEETTE-SHHHHHHHHHH-------------HTCTTTTSEEEEEE-SHHHHHTHHHHHHHSSEE
T ss_pred HHHHHHHHHHHcCCCEEEecCCCchHHHHHHHHH-------------hhhcCcccceeeccccHHHHhhHHHHhhhcCeE
Confidence 578999999999999776653 123444444443 444556667888999999999988877778999
Q ss_pred EEeCCCCe-eeehhh-------hhhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecC-----C
Q 017962 99 VIDLPDWQ-VIPAEN-------IVASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVE-----D 154 (363)
Q Consensus 99 vv~~~dW~-iIPlEn-------liA~~q~~~~~l~a~-----------v~~~~eA~~~~~~LE~G~dGVvl~~~-----d 154 (363)
+|...|-- -||+|. ||+.....+.-+|.. ..+-.|.--...+..-|+|||+|..+ -
T Consensus 244 miaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~~ 323 (348)
T PF00224_consen 244 MIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGKY 323 (348)
T ss_dssp EEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSSS
T ss_pred EEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCCC
Confidence 98644422 244443 444443334444442 23557778888899999999999943 2
Q ss_pred H-HHHHHHHHhh
Q 017962 155 V-KAVLALKEYF 165 (363)
Q Consensus 155 ~-~ei~~l~~~~ 165 (363)
| +.|+-+.+++
T Consensus 324 p~~~v~~~~~i~ 335 (348)
T PF00224_consen 324 PVEAVKTMARII 335 (348)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 3 5565566655
No 26
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=80.94 E-value=2.1 Score=37.08 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHhhcccCeEEEecCCHH-------------HHHHHHHhhcccccccceeeeeEE
Q 017962 130 TPSEAQIFLEALEQGLGGIVLKVEDVK-------------AVLALKEYFDGRNEVSNLLSLMKA 180 (363)
Q Consensus 130 ~~~eA~~~~~~LE~G~dGVvl~~~d~~-------------ei~~l~~~~~~~~~~~~~l~L~~a 180 (363)
.-=+....+.+|++|+|||++..-.++ -+..+++++++...+.+++.+...
T Consensus 38 Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~ 101 (124)
T PF02662_consen 38 GRVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWI 101 (124)
T ss_pred CccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEe
Confidence 345778899999999999999433222 245556666655555555555443
No 27
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=80.90 E-value=8.4 Score=37.03 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=59.0
Q ss_pred eEEEEEEEEEcCCc-ceEEEeecC------C-CCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeec-----CCcee
Q 017962 178 MKATVTRVDVAGMG-DRVCVDLCS------L-MRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNA-----GPVHA 244 (363)
Q Consensus 178 ~~atVt~V~~vGmG-dRVCVDtcs------l-l~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVNA-----GaVHa 244 (363)
-+++|++++++.-. ...++..-. + ++||+=+.| -.... ..|||-+-. |-+.=
T Consensus 6 ~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l---------~~~~~------~~~pySias~p~~~~~l~l 70 (289)
T PRK08345 6 HDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQV---------TIPGV------GEVPISICSSPTRKGFFEL 70 (289)
T ss_pred eeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEE---------EcCCC------CceeeEecCCCCCCCEEEE
Confidence 35888888888765 456665321 1 456653332 11111 124555422 33444
Q ss_pred EEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 245 YVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 245 Yv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
.|..-|.-|+||..|+.||+|.+-...|+.-. .- ..+.+|+++|=+
T Consensus 71 ~Ik~~G~~S~~L~~l~~Gd~v~v~gP~G~~f~--~~--~~~~~~~llIAg 116 (289)
T PRK08345 71 CIRRAGRVTTVIHRLKEGDIVGVRGPYGNGFP--VD--EMEGMDLLLIAG 116 (289)
T ss_pred EEEeCChHHHHHHhCCCCCEEEEeCCCCCCCC--cc--cccCceEEEEec
Confidence 45556889999999999999999998887321 10 123579998865
No 28
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=80.80 E-value=4.9 Score=38.62 Aligned_cols=101 Identities=17% Similarity=0.238 Sum_probs=62.0
Q ss_pred CchhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceE
Q 017962 20 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 98 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 98 (363)
.+...++.+|+.|+++|+||- ++.+.++++-+-.+..| .|.+ +. ..
T Consensus 72 ~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP-----------~G~R-g~----~~----------------- 118 (249)
T TIGR03239 72 NEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPP-----------EGIR-GV----SV----------------- 118 (249)
T ss_pred CCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCC-----------CCcC-CC----Cc-----------------
Confidence 356778888999999998885 44566666655555544 1211 00 00
Q ss_pred EEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh-cccCeEEEecCCHH
Q 017962 99 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE-QGLGGIVLKVEDVK 156 (363)
Q Consensus 99 vv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE-~G~dGVvl~~~d~~ 156 (363)
-....+|...| .-++.. +.++.+++.+.+++-.+-+-+++. .|+||+.+-|.|..
T Consensus 119 ~~r~~~y~~~~--~y~~~~-n~~~~vi~~IEt~~av~n~~eI~av~gvd~l~iG~~DLs 174 (249)
T TIGR03239 119 SHRSNRYGTVP--DYFATI-NDNITVLVQIESQKGVDNVDEIAAVDGVDGIFVGPSDLA 174 (249)
T ss_pred chhhhccCChH--HHHHHh-ccccEEEEEECCHHHHHhHHHHhCCCCCCEEEEChHHHH
Confidence 00011222222 223332 456789999999988888878776 47999999987654
No 29
>PTZ00300 pyruvate kinase; Provisional
Probab=80.03 E-value=4.2 Score=42.69 Aligned_cols=141 Identities=15% Similarity=0.160 Sum_probs=80.9
Q ss_pred CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH------HHHHH-HHhhccccc-ccc-------------eeee
Q 017962 119 GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK------AVLAL-KEYFDGRNE-VSN-------------LLSL 177 (363)
Q Consensus 119 ~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~------ei~~l-~~~~~~~~~-~~~-------------~l~L 177 (363)
+.+..|++...+.+--+-.=+++ .|+|||++.+.|.+ ++..+ +.++...+. +.. .-.-
T Consensus 186 ~~~~~IiaKIEt~eav~nldeI~-~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~P 264 (454)
T PTZ00300 186 GGDIMIICKIENHQGVQNIDSII-EESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRP 264 (454)
T ss_pred CCCceEEEEECCHHHHHhHHHHH-HhCCEEEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCC
Confidence 34567999999999888888888 89999999999864 22111 223222111 110 0112
Q ss_pred eEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEe-----------eccccCCC------CC--CCCe---
Q 017962 178 MKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVH-----------SECLESNY------IA--SRPF--- 235 (363)
Q Consensus 178 ~~atVt~V~~vGmGdRVCVDtcsll~~GEGmLVGs~s~glfLVh-----------sEt~e~~Y------va--~RPF--- 235 (363)
+.|+|+.|-.. ..|.++ ==||=|-++.|-|=+. .|.....| .. ..|+
T Consensus 265 TRAEvsDVanA------v~dG~D-----avMLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ 333 (454)
T PTZ00300 265 TRAEVSDVANA------VFNGAD-----CVMLSGETAKGKYPNEVVQYMARICLEAQSAVNEYVFFNSIKKLQPIPMSAE 333 (454)
T ss_pred CchhHHHHHHH------HHhCCc-----EEEEechhcCCCCHHHHHHHHHHHHHHHHhhhchhhhhhhhhccccCCCChH
Confidence 44555544322 112111 1267677776655322 22211111 01 1122
Q ss_pred ------------eeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCC
Q 017962 236 ------------RVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKG 272 (363)
Q Consensus 236 ------------RVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G 272 (363)
++||.+.=.|+.. |...+.+|-+|+.-.|+++-.+=
T Consensus 334 ~~ia~sa~~~a~~l~a~aIiv~T~s-G~tA~~vs~~RP~~pIia~t~~~ 381 (454)
T PTZ00300 334 EAVCSSAVNSVYETKAKALVVLSNT-GRSARLVAKYRPNCPIVCVTTRL 381 (454)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCC-cHHHHHHHhhCCCCCEEEECCCH
Confidence 5777777788775 78888999999999999886543
No 30
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=80.02 E-value=5.4 Score=38.97 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=82.5
Q ss_pred chhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCC--------------ccccCCCCeeEEEEEecChhhh
Q 017962 21 SKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEG--------------EVYDSGDRRVGSIIEVSTPQEL 85 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g--------------~~~~~~gk~v~~~~~v~~~e~~ 85 (363)
+...++.+|+.|+++|++|- ++++.++++-+-.++.|.-..+- +.+..-+..+.+++.|.+++-+
T Consensus 79 ~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a~ 158 (267)
T PRK10128 79 SKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTAL 158 (267)
T ss_pred CHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHHH
Confidence 56788999999999999995 55777777767766666322110 1122234567788899998887
Q ss_pred hhhcccc--CCCceEEEeCC----------CCee---e-ehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 017962 86 QQLQPAD--GQAENIVIDLP----------DWQV---I-PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 149 (363)
Q Consensus 86 e~~~~~~--~~~~~vvv~~~----------dW~i---I-PlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVv 149 (363)
+.+..-. ...+.+.+-.. +|.- . -++.++++.+..+..+-..+.+.++++-+ +++|.+=|+
T Consensus 159 ~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~~~~~~~a~~~---~~~G~~~v~ 235 (267)
T PRK10128 159 DNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVDPDMAQKC---LAWGANFVA 235 (267)
T ss_pred HhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEcCCCHHHHHHH---HHcCCcEEE
Confidence 7655433 23566665221 2221 0 13556665554444444456788777754 689999887
Q ss_pred EecCC
Q 017962 150 LKVED 154 (363)
Q Consensus 150 l~~~d 154 (363)
+..|-
T Consensus 236 ~g~D~ 240 (267)
T PRK10128 236 VGVDT 240 (267)
T ss_pred EChHH
Confidence 77764
No 31
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=79.56 E-value=6.3 Score=38.33 Aligned_cols=115 Identities=9% Similarity=0.075 Sum_probs=64.0
Q ss_pred chhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccccCCCceEE
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIV 99 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~e~~e~~~~~~~~~~~vv 99 (363)
-.+.+..|-++|+|++++++.-.+...++.+. .++.|.....++.-++ .+.++.++..... ++-
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~-------------~~~~gi~~I~lv~PtT~~eri~~i~~~a~g--FIY 172 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLPYEESDYLISV-------------CNLYNIELILLIAPTSSKSRIQKIARAAPG--CIY 172 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCCHHHHHHHHHH-------------HHHcCCCEEEEECCCCCHHHHHHHHHhCCC--cEE
Confidence 36789999999999999987433333322222 1223433334444444 4555555554422 333
Q ss_pred E-eCC---CC-eeee--hhhhhhcccCC-Cc--eEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 100 I-DLP---DW-QVIP--AENIVASFQGS-GK--TVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 100 v-~~~---dW-~iIP--lEnliA~~q~~-~~--~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
+ .-. += +-+| +.++++.+... +. -+=-.+++.++|+. +.+.|+|||++-+.
T Consensus 173 ~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~---~~~~GADGvVVGSa 233 (263)
T CHL00200 173 LVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQ---IKGWNINGIVIGSA 233 (263)
T ss_pred EEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHH---HHhcCCCEEEECHH
Confidence 3 111 11 1223 55666655432 11 22335777887776 67899999998764
No 32
>PLN02591 tryptophan synthase
Probab=79.27 E-value=7.5 Score=37.63 Aligned_cols=117 Identities=12% Similarity=0.122 Sum_probs=63.0
Q ss_pred chhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCceEE
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIV 99 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~~~~~~~vv 99 (363)
-.+.+..|-++|+|++++++=-.+...++.... ++.|-....++.-+ +.+.+..++......=|+|
T Consensus 95 ~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~-------------~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~V 161 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDLPLEETEALRAEA-------------AKNGIELVLLTTPTTPTERMKAIAEASEGFVYLV 161 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH-------------HHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEe
Confidence 467899999999999999863222222222211 12222222333223 3445555665543333333
Q ss_pred Ee--CCCCe-eee--hhhhhhcccCC-CceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 100 ID--LPDWQ-VIP--AENIVASFQGS-GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 100 v~--~~dW~-iIP--lEnliA~~q~~-~~~l~--a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
=. .++.+ -+| +++.++.+.+. +..|+ ..+++.++++. +++.|+|||++-+.
T Consensus 162 s~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~---~~~~GADGvIVGSa 220 (250)
T PLN02591 162 SSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQ---IAGWGADGVIVGSA 220 (250)
T ss_pred eCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHH---HHhcCCCEEEECHH
Confidence 21 12221 223 45666666542 22333 35677888775 78899999999773
No 33
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=78.50 E-value=31 Score=31.52 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=65.1
Q ss_pred EEEEEe--CchhHHHHHHHhCccEEEEcccc---h----hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhh
Q 017962 14 RVWIWT--ESKQVMTAAVERGWNTFVFLSEN---Q----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE 84 (363)
Q Consensus 14 ~vWvw~--~~K~~vt~AlEsG~~~~v~~~~~---~----~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~ 84 (363)
.+|+.- .+-+-+..+++.|+|.+++.... . +..+.+++-..+-++-++++......+.. ..-.++.+
T Consensus 75 pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~----~~~~~~~~ 150 (234)
T cd04732 75 PVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLE----TSEVSLEE 150 (234)
T ss_pred CEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCee----ecCCCHHH
Confidence 356643 57888999999999999987632 2 23334443233333444555433221110 00112222
Q ss_pred hhhhccccCCCceEEEeCCC----Ceeeehhhhhhcc-cCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 85 LQQLQPADGQAENIVIDLPD----WQVIPAENIVASF-QGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 85 ~e~~~~~~~~~~~vvv~~~d----W~iIPlEnliA~~-q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
+-..... ..++.+++...+ -+-+++| ++.++ +..+..+++ .+.+.++++.++. .|+|||++-+
T Consensus 151 ~~~~~~~-~ga~~iii~~~~~~g~~~g~~~~-~i~~i~~~~~ipvi~~GGi~~~~di~~~~~---~Ga~gv~vg~ 220 (234)
T cd04732 151 LAKRFEE-LGVKAIIYTDISRDGTLSGPNFE-LYKELAAATGIPVIASGGVSSLDDIKALKE---LGVAGVIVGK 220 (234)
T ss_pred HHHHHHH-cCCCEEEEEeecCCCccCCCCHH-HHHHHHHhcCCCEEEecCCCCHHHHHHHHH---CCCCEEEEeH
Confidence 2111111 225666665321 1112222 22222 122344544 4688888887765 4999999865
No 34
>PRK05826 pyruvate kinase; Provisional
Probab=77.86 E-value=18 Score=38.14 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHhhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 017962 130 TPSEAQIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDG 167 (363)
Q Consensus 130 ~~~eA~~~~~~LE~G~dGVvl~-~~d~~ei~~l~~~~~~ 167 (363)
+..|......+|+.|+|||.++ .++.+++++++++++.
T Consensus 172 te~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~ 210 (465)
T PRK05826 172 TEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLRE 210 (465)
T ss_pred ChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 3567777788999999999998 7889999999999854
No 35
>PTZ00066 pyruvate kinase; Provisional
Probab=77.52 E-value=9.8 Score=40.73 Aligned_cols=208 Identities=15% Similarity=0.153 Sum_probs=123.7
Q ss_pred CchhHH-HHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCce
Q 017962 20 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 97 (363)
Q Consensus 20 ~~K~~v-t~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 97 (363)
.||+.+ .-|++-|+|.+-... .+++.+.++.++ +++.|+.+..+.+|.+++.++.+..-+..+|-
T Consensus 210 kD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~-------------l~~~g~~~~IiAKIE~~~av~NldeIl~~sDG 276 (513)
T PTZ00066 210 KDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQL-------------LGERGRHIKIIPKIENIEGLINFDEILAESDG 276 (513)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHH-------------HHhCCCCceEEEEECCHHHHHHHHHHHHhcCE
Confidence 467775 899999999544332 123444444443 23345566788899999999998888888999
Q ss_pred EEEeCCCCee-eehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 017962 98 IVIDLPDWQV-IPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 154 (363)
Q Consensus 98 vvv~~~dW~i-IPlEnliA-------~~q~~~~~l~a-----------~v~~~~eA~~~~~~LE~G~dGVvl~~~d---- 154 (363)
++|...|--+ ||+|++-. .....+.-+|. ...+-.|+--.+.+..-|+|+|+|..+.
T Consensus 277 IMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA~G~ 356 (513)
T PTZ00066 277 IMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETANGK 356 (513)
T ss_pred EEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhcCCc
Confidence 9996666654 78887532 22222222332 1344577888889999999999997664
Q ss_pred --HHHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEecc-CceEEEEeeccccCCCCC
Q 017962 155 --VKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSF-ARGLFLVHSECLESNYIA 231 (363)
Q Consensus 155 --~~ei~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGmLVGs~-s~glfLVhsEt~e~~Yva 231 (363)
.+.|+-+.+++.+.+ .. +... .++..... ..... +..-.+.+|=+
T Consensus 357 yPveaV~~m~~I~~~aE-~~--~~~~---------------------~~~~~~~~-~~~~~~~~~~~ia~aa~------- 404 (513)
T PTZ00066 357 FPVEAVNIMAKICFEAE-TC--IDYR---------------------VLYHAIHL-AVPTPVSVQEAVARSAV------- 404 (513)
T ss_pred CHHHHHHHHHHHHHHHh-hc--cchH---------------------Hhhhhhhc-cccCCCchhhHHHHHHH-------
Confidence 355666677664321 11 1000 00000000 00000 00000000000
Q ss_pred CCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCC
Q 017962 232 SRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGR 273 (363)
Q Consensus 232 ~RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~ 273 (363)
.--..+||.+.=+|+.. |..++.+|-.|+--.|+++-.+=+
T Consensus 405 ~~A~~l~a~aIv~~T~S-G~TAr~iSk~RP~~pIia~t~~~~ 445 (513)
T PTZ00066 405 ETAEDINAKLIIALTET-GNTARLISKYRPSCTILALSASPS 445 (513)
T ss_pred HHHHhCCCCEEEEECCC-cHHHHHHHhhCCCCCEEEECCCHH
Confidence 00135788888888886 888899999999999999887543
No 36
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=77.25 E-value=12 Score=34.43 Aligned_cols=110 Identities=19% Similarity=0.158 Sum_probs=57.5
Q ss_pred chhHHHHHHHhCccEEEEccc--------c-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017962 21 SKQVMTAAVERGWNTFVFLSE--------N-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 91 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~--------~-~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~ 91 (363)
..+.+..|.+.|+|.++.... + .+..+...+. .+.. ....+.+.++...+..
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~----------------~~i~--vi~~v~t~ee~~~a~~- 137 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY----------------PGQL--LMADCSTLEEGLAAQK- 137 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC----------------CCCe--EEEeCCCHHHHHHHHH-
Confidence 455689999999996554321 1 1222222210 1222 3346777777644332
Q ss_pred cCCCceEEEeCCCCe------eeehhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 92 DGQAENIVIDLPDWQ------VIPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 92 ~~~~~~vvv~~~dW~------iIPlEnliA~~q~~-~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
..++++.+...+.+ .-+.-+++.++... +..+++ .++++++++. +++.|+|||++-+.
T Consensus 138 -~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~---~l~~GadgV~iGsa 204 (221)
T PRK01130 138 -LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKK---ALELGAHAVVVGGA 204 (221)
T ss_pred -cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHH---HHHCCCCEEEEchH
Confidence 24788776432221 11223344444322 334444 3556666665 56689999998754
No 37
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=77.06 E-value=1.6 Score=40.71 Aligned_cols=31 Identities=39% Similarity=0.625 Sum_probs=26.6
Q ss_pred CceeeeeecCCCCEEEEEecCCCcccceeee
Q 017962 327 EKAIPVTSLKVGDEVLLRVQGAARHTGIEIQ 357 (363)
Q Consensus 327 g~~vsVt~Lk~GD~VL~~~~~~gRHfG~~I~ 357 (363)
|++|+..+|+|||-|+.+.....+|+||-|.
T Consensus 121 g~~V~~~~lqpGDLVfF~~~~~~~HVGIyiG 151 (190)
T PRK10838 121 GKSVSRSKLRTGDLVLFRAGSTGRHVGIYIG 151 (190)
T ss_pred CcCcccCCCCCCcEEEECCCCCCCEEEEEec
Confidence 5778899999999999887666789999883
No 38
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=76.83 E-value=6.9 Score=37.46 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=29.7
Q ss_pred CCCceEEEEcCCHHHHHHHHHHhh-cccCeEEEecCCHH
Q 017962 119 GSGKTVFAISKTPSEAQIFLEALE-QGLGGIVLKVEDVK 156 (363)
Q Consensus 119 ~~~~~l~a~v~~~~eA~~~~~~LE-~G~dGVvl~~~d~~ 156 (363)
+..+.+++.+.|++-..-+-+++. .|+||+.+-|.|..
T Consensus 137 n~~~~vi~~IEt~~av~n~~eI~a~~gvd~l~~G~~DLs 175 (249)
T TIGR02311 137 DEEICVLLQVETREALDNLEEIAAVEGVDGVFIGPADLA 175 (249)
T ss_pred hhceEEEEEecCHHHHHHHHHHHCCCCCcEEEECHHHHH
Confidence 346778888999887777777774 48999999988665
No 39
>PRK05713 hypothetical protein; Provisional
Probab=76.71 E-value=20 Score=34.75 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=28.5
Q ss_pred cCCc-eeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 249 PGGK-TCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 249 pggk-T~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
|+|+ |.||..|+.||+|.+-...|..- .. +-....||++||=+
T Consensus 157 ~~G~~s~~l~~l~~Gd~v~l~~p~gg~~--~~-~~~~~~~~~vlIAg 200 (312)
T PRK05713 157 RPGAFCDAARQLQVGDLLRLGELRGGAL--HY-DPDWQERPLWLLAA 200 (312)
T ss_pred CCCccchhhhcCCCCCEEEEccCCCCce--Ee-cCCCCCCcEEEEec
Confidence 6665 88999999999999766665210 00 11113589998854
No 40
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=76.09 E-value=8 Score=32.30 Aligned_cols=90 Identities=23% Similarity=0.376 Sum_probs=53.1
Q ss_pred ccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEe
Q 017962 169 NEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLV 248 (363)
Q Consensus 169 ~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVNAGaVHaYv~~ 248 (363)
.......++..++|.++.|+ +|-+|-- +.=+.+ ||.-+|. =..|. |=|.++-.-.|....
T Consensus 11 ~~~~~p~~i~~G~V~s~~PL----~I~i~~~-liL~~~-----------~L~i~~~-l~~~~--~~~~~~~~~~~~~~~- 70 (100)
T PF10844_consen 11 VEASNPVDIVIGTVVSVPPL----KIKIDQK-LILDKD-----------FLIIPEL-LKDYT--RDITIEHNSETDNIT- 70 (100)
T ss_pred HhcCCCceeEEEEEEecccE----EEEECCe-EEEchH-----------HEEeehh-ccceE--EEEEEecccccccee-
Confidence 34566778899999999993 4444431 111111 2333332 12221 122232222222111
Q ss_pred cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeE
Q 017962 249 PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRV 282 (363)
Q Consensus 249 pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRv 282 (363)
-.|-..|+.||+|++.-.+|..+=.++.||
T Consensus 71 ----i~~~~~Lk~GD~V~ll~~~~gQ~yiVlDkV 100 (100)
T PF10844_consen 71 ----ITFTDGLKVGDKVLLLRVQGGQKYIVLDKV 100 (100)
T ss_pred ----EEEecCCcCCCEEEEEEecCCCEEEEEEeC
Confidence 678899999999999999998998888875
No 41
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=75.99 E-value=2.8 Score=41.34 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=37.5
Q ss_pred ceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 96 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 96 ~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
+.++..+. .|.+.++..++..+.+++..|.|.++|+. +++.|+|+|++.-
T Consensus 115 ~~v~~~~G----~p~~~~i~~l~~~gi~v~~~v~s~~~A~~---a~~~G~D~iv~qG 164 (330)
T PF03060_consen 115 DVVSFGFG----LPPPEVIERLHAAGIKVIPQVTSVREARK---AAKAGADAIVAQG 164 (330)
T ss_dssp SEEEEESS----SC-HHHHHHHHHTT-EEEEEESSHHHHHH---HHHTT-SEEEEE-
T ss_pred EEEEeecc----cchHHHHHHHHHcCCccccccCCHHHHHH---hhhcCCCEEEEec
Confidence 34555443 47788899999999999999999999986 5778999999984
No 42
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=75.71 E-value=7.3 Score=38.39 Aligned_cols=113 Identities=11% Similarity=0.124 Sum_probs=67.5
Q ss_pred eCchhHHHHHHHhCccEEEEccc-c-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc-CCC
Q 017962 19 TESKQVMTAAVERGWNTFVFLSE-N-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD-GQA 95 (363)
Q Consensus 19 ~~~K~~vt~AlEsG~~~~v~~~~-~-~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~-~~~ 95 (363)
..+.+++.+.-+.|.=+++-... + .++.+++..+... .++++++-+-...+...+.+.... .+.
T Consensus 22 ~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~-------------t~~pfgvn~~~~~~~~~~~~~~~~~~~v 88 (307)
T TIGR03151 22 VATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKEL-------------TDKPFGVNIMLLSPFVDELVDLVIEEKV 88 (307)
T ss_pred CCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHHh-------------cCCCcEEeeecCCCCHHHHHHHHHhCCC
Confidence 35688888888888888774321 1 1222233333110 134445444333344333333222 345
Q ss_pred ceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 96 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 96 ~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
+.|.+.+. .|-+ ++.+++..+.++++.+.+.++|+.+. +.|+|+|+++.
T Consensus 89 ~~v~~~~g----~p~~-~i~~lk~~g~~v~~~v~s~~~a~~a~---~~GaD~Ivv~g 137 (307)
T TIGR03151 89 PVVTTGAG----NPGK-YIPRLKENGVKVIPVVASVALAKRME---KAGADAVIAEG 137 (307)
T ss_pred CEEEEcCC----CcHH-HHHHHHHcCCEEEEEcCCHHHHHHHH---HcCCCEEEEEC
Confidence 55555332 3544 88999888889999999999986554 66999999855
No 43
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=75.21 E-value=39 Score=31.02 Aligned_cols=115 Identities=18% Similarity=0.141 Sum_probs=64.2
Q ss_pred hhHHHHHHHhCccEEEEccc-chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCceEE
Q 017962 22 KQVMTAAVERGWNTFVFLSE-NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIV 99 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~-~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~~~~~~~vv 99 (363)
+++..++.+.|+.++.+... ..+.+++...+-.+.... +|-. +..+ -+. +.++.+.+. .. .++.++
T Consensus 26 ~~~a~a~~~~G~~~~~~~~~~~i~~i~~~~~~Pil~~~~-~d~~-----~~~~----~~~~~~~~v~~a~-~a-Gad~I~ 93 (221)
T PRK01130 26 AAMALAAVQGGAVGIRANGVEDIKAIRAVVDVPIIGIIK-RDYP-----DSEV----YITPTLKEVDALA-AA-GADIIA 93 (221)
T ss_pred HHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEe-cCCC-----CCCc----eECCCHHHHHHHH-Hc-CCCEEE
Confidence 77888888899999887541 123333333332221111 1100 1111 122 223333332 22 467777
Q ss_pred EeCCCC---eeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 100 IDLPDW---QVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 100 v~~~dW---~iIPlEnliA~~q~-~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
+....= .-..++.++..++. ..-.+++.+.+.+|++ .+.+.|+|-+.+.
T Consensus 94 ~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~---~a~~~G~d~i~~~ 146 (221)
T PRK01130 94 LDATLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGL---AAQKLGFDFIGTT 146 (221)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHH---HHHHcCCCEEEcC
Confidence 733211 11455678888877 6778999999999985 5678899988763
No 44
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.15 E-value=5.5 Score=39.42 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=36.7
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 166 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~~ 166 (363)
.+|..+|.|.+||+.+ ++.|+|.|+|+.=+++++++..+++.
T Consensus 195 ~kIeVEv~tleea~ea---~~~gaDiI~LDn~s~e~l~~av~~~~ 236 (281)
T PRK06106 195 VKIEVEVDTLDQLEEA---LELGVDAVLLDNMTPDTLREAVAIVA 236 (281)
T ss_pred CcEEEEeCCHHHHHHH---HHcCCCEEEeCCCCHHHHHHHHHHhC
Confidence 5799999999998765 58999999999999999988877663
No 45
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=74.48 E-value=40 Score=32.18 Aligned_cols=118 Identities=20% Similarity=0.234 Sum_probs=71.8
Q ss_pred HHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEE-------------Eec-cCceEEEEee
Q 017962 157 AVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLL-------------VGS-FARGLFLVHS 222 (363)
Q Consensus 157 ei~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGmL-------------VGs-~s~glfLVhs 222 (363)
|-.+|++.+... .....++..|+|..-.+-+..+.+-+|-.+.=.--.||. |+. +|+-+.+.++
T Consensus 101 en~~L~~lL~~~--~~~~~~~i~A~Vi~~~~~~~~~~i~Id~G~~~Gv~~g~~Vv~~~GlVG~V~~v~~~~s~V~li~d~ 178 (276)
T PRK13922 101 ENARLRELLNLK--ESLDYQFITARVISRSPDPWSQQVTIDKGSNDGVKKGMPVIDPGGLVGRVIEVSPNTSRVLLLTDP 178 (276)
T ss_pred HHHHHHHHhcCc--ccCCCceEEEEEEEeCCCCceeEEEEccCcccCCCCCCceEcCCCCeEEEEEECCCeeEEEEEEcC
Confidence 445566665432 122368999999999999999999999887655445554 444 3444444444
Q ss_pred ccccCCCCCCCCeeeecCCceeEEEecCC----ceeee---eeccCCCeEEEEcCCCCeeE-EeeeeEE
Q 017962 223 ECLESNYIASRPFRVNAGPVHAYVLVPGG----KTCYL---SELKSGKEVIVVDQKGRQRT-AVVGRVK 283 (363)
Q Consensus 223 Et~e~~Yva~RPFRVNAGaVHaYv~~pgg----kT~YL---SEL~sG~eVLvVd~~G~~R~-~~VGRvK 283 (363)
++. =|.++.--.....+.--|. .-+|+ .+++.||.|..-+.+|.-=. ..||+|+
T Consensus 179 ~~~-------v~v~i~~~~~~gi~~G~g~~~~l~l~~i~~~~~i~~GD~VvTSGl~g~fP~Gi~VG~V~ 240 (276)
T PRK13922 179 NSR-------VPVQVGRNGIRGILSGNGSGDNLKLEFIPRSADIKVGDLVVTSGLGGIFPAGLPVGKVT 240 (276)
T ss_pred CCc-------eEEEEEcCCceEEEEecCCCCceEEEecCCCCCCCCCCEEEECCCCCcCCCCCEEEEEE
Confidence 331 2444411112222221111 44566 67999999999888875443 7899986
No 46
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.10 E-value=2.8 Score=38.50 Aligned_cols=93 Identities=26% Similarity=0.453 Sum_probs=54.5
Q ss_pred EEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCce-eEEEecCCce---ee
Q 017962 180 ATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVH-AYVLVPGGKT---CY 255 (363)
Q Consensus 180 atVt~V~~vGmGdRVCVDtcsll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVNAGaVH-aYv~~pggkT---~Y 255 (363)
.+|..|-. + |.|.|. |+.+.|.|.=+.-.+-+| |.- .+.| -|||=.+-=- -|+ -.||. +|
T Consensus 40 GRiRqV~~-~-G~~~~t-----~Ra~DG~~tL~~~Ga~~L-~~~-l~~P-----~~RVvV~~E~e~f~--r~Gk~VFaKf 103 (155)
T COG1370 40 GRIRQVFV-D-GERIAT-----VRANDGLFTLTIEGARRL-HRA-LPFP-----RMRVVVSDEAEEFV--RKGKSVFAKF 103 (155)
T ss_pred CceEEEEE-C-CEEEEE-----EEcCCceEEechhhhHHH-Hhc-CCCC-----ceEEEeccccHHHH--Hhccchhhhh
Confidence 34444432 5 999885 788888887666555544 332 1222 2444221100 011 01221 11
Q ss_pred e----eeccCCCeEEEEcCCCCeeEEeeeeEEEecccee
Q 017962 256 L----SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLI 290 (363)
Q Consensus 256 L----SEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLl 290 (363)
. .+|++|||||+||.+++- .-|||+-+-.+-|.
T Consensus 104 Vi~~D~~iR~~dEvlVVne~d~L--lAvGra~ls~~E~~ 140 (155)
T COG1370 104 VIDVDEEIRAGDEVLVVNEDDEL--LAVGRALLSGAEMR 140 (155)
T ss_pred eeccCcccCCCCeEEEECCCCcE--EEeeeEeecHHHHh
Confidence 1 489999999999999865 88999987766665
No 47
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.06 E-value=6.6 Score=39.13 Aligned_cols=42 Identities=14% Similarity=0.021 Sum_probs=36.6
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
..+|..+|.|.+||+.++ +.|+|.|+|+.=+|+++++..+.+
T Consensus 197 ~~kIeVEv~tleea~~a~---~agaDiImLDnmspe~l~~av~~~ 238 (290)
T PRK06559 197 VKMVEVEVESLAAAEEAA---AAGADIIMLDNMSLEQIEQAITLI 238 (290)
T ss_pred CCeEEEECCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHh
Confidence 368999999999987654 789999999999999998888765
No 48
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=73.46 E-value=20 Score=28.29 Aligned_cols=88 Identities=25% Similarity=0.289 Sum_probs=49.4
Q ss_pred EEEEEEEEEcCCcc---eEEEeecC---CCCCCceEEEeccCceEEEEeeccccCCC-CCCCCeeeecCCceeEEEe-cC
Q 017962 179 KATVTRVDVAGMGD---RVCVDLCS---LMRPGEGLLVGSFARGLFLVHSECLESNY-IASRPFRVNAGPVHAYVLV-PG 250 (363)
Q Consensus 179 ~atVt~V~~vGmGd---RVCVDtcs---ll~~GEGmLVGs~s~glfLVhsEt~e~~Y-va~RPFRVNAGaVHaYv~~-pg 250 (363)
+|+|++++.+.-.= |...+... -+.||+=+.|.-... .+....|| +++.| =+.|-.+=.|.. |+
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~------~~~~~R~yS~~s~~--~~~~~~~~~ik~~~~ 72 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPIN------GKQVSRPYSPASSP--DDKGYLEFAIKRYPN 72 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEET------TEEEEEEEEBCSST--TSSSEEEEEEEECTT
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccC------CcceecceeEeeec--CCCCcEEEEEEeccC
Confidence 57888888887432 33333222 256666544432211 12223444 23333 133445445554 44
Q ss_pred C-ceeeeeeccCCCeEEEEcCCCCe
Q 017962 251 G-KTCYLSELKSGKEVIVVDQKGRQ 274 (363)
Q Consensus 251 g-kT~YLSEL~sG~eVLvVd~~G~~ 274 (363)
| -|+||++|+.||+|.+-...|+.
T Consensus 73 G~~S~~L~~l~~Gd~v~i~gP~G~f 97 (99)
T PF00970_consen 73 GRVSRYLHQLKPGDEVEIRGPYGNF 97 (99)
T ss_dssp SHHHHHHHTSCTTSEEEEEEEESSE
T ss_pred CHHHHHHHhCCCCCEEEEEEccccc
Confidence 4 68899999999999998887764
No 49
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=72.05 E-value=7.3 Score=38.44 Aligned_cols=55 Identities=16% Similarity=0.083 Sum_probs=44.1
Q ss_pred ehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017962 109 PAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 166 (363)
Q Consensus 109 PlEnliA~~q~~--~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~~ 166 (363)
.+++-|+++... ..+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+.+.
T Consensus 168 ~i~~av~~~r~~~~~~kIeVEv~~leea~~a---~~agaDiI~LDn~~~e~l~~~v~~l~ 224 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKVVEVEVESLEDALKA---AKAGADIIMLDNMTPEEIREVIEALK 224 (278)
T ss_pred HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHH---HHcCcCEEEECCCCHHHHHHHHHHHH
Confidence 466666655443 36799999999998765 57999999999999999988888764
No 50
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.55 E-value=8.5 Score=38.25 Aligned_cols=42 Identities=12% Similarity=-0.042 Sum_probs=36.4
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 166 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~~ 166 (363)
.+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+.+.
T Consensus 200 ~kIeVEv~tl~ea~ea---l~~gaDiI~LDnm~~e~vk~av~~~~ 241 (289)
T PRK07896 200 LPCEVEVDSLEQLDEV---LAEGAELVLLDNFPVWQTQEAVQRRD 241 (289)
T ss_pred CCEEEEcCCHHHHHHH---HHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 5799999999988765 78999999999999999988877653
No 51
>PF13403 Hint_2: Hint domain
Probab=71.52 E-value=10 Score=33.64 Aligned_cols=90 Identities=20% Similarity=0.306 Sum_probs=57.4
Q ss_pred eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEE--------eccceeEEEEEecCCCCeE---------EEE
Q 017962 244 AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKI--------ESRPLILVEAKTNSGDQTL---------YGI 306 (363)
Q Consensus 244 aYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKI--------E~RPLllIeAe~~~~~g~~---------~sv 306 (363)
+.|.+|.| -+-.++|+.||+|+..| .|-....-|||.++ +.-.++.|.|-+= ++|.. +.+
T Consensus 7 T~I~T~~G-~~~Ve~L~~GD~V~T~d-gg~~~V~wig~~~~~~~~~~~~~~~~pvri~a~al-G~g~P~~dl~vsp~hrv 83 (147)
T PF13403_consen 7 TLIETPDG-PRPVEDLRPGDRVLTRD-GGFQPVRWIGRRTVSPADLPAPPRLAPVRIPAGAL-GNGRPSRDLLVSPQHRV 83 (147)
T ss_pred CEEecCCc-CeEeeccCCCCEEEecC-CCEEEEEEEEEEEecccccCcCCCcceEEEECCcc-CCCCCCcCeEECcccce
Confidence 46788888 78899999999999987 34455677999998 3445567777552 12111 233
Q ss_pred EeEecceEEEecCCCCCCCCCceeeeeecCCCCEEE
Q 017962 307 ILQNAETVALVSPCKGTGEQEKAIPVTSLKVGDEVL 342 (363)
Q Consensus 307 iLQnAETIrLv~p~~~~~~~g~~vsVt~Lk~GD~VL 342 (363)
++.+...=++.+.+ .-.+++..|--|+.|.
T Consensus 84 l~~~~~~~~~~g~~------~vlv~A~~Lv~~~~i~ 113 (147)
T PF13403_consen 84 LLRGPRAELLFGRD------EVLVPARDLVDGRGIR 113 (147)
T ss_pred eecchhhhhhcCCC------ceEEEHHHhcCCCCcE
Confidence 44433333344433 4566777777777665
No 52
>PLN02762 pyruvate kinase complex alpha subunit
Probab=70.79 E-value=15 Score=39.39 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=89.6
Q ss_pred CchhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCC--CeeEEEEEecChhhhhhhccccCCCc
Q 017962 20 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGD--RRVGSIIEVSTPQELQQLQPADGQAE 96 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~g--k~v~~~~~v~~~e~~e~~~~~~~~~~ 96 (363)
.||+.+.-|++-|+|.+-+.- .+++.++++.++ +.+.| ..+..+.+|.+++-++.+..-...+|
T Consensus 204 kD~~di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~-------------l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~sD 270 (509)
T PLN02762 204 KDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSY-------------IAARSRDSDIGVIAKIESLDSLKNLEEIIRASD 270 (509)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCCCCceEEEEeCCHHHHHHHHHHHHhcC
Confidence 578889999999999655442 123444444333 22222 24567779999999999888888899
Q ss_pred eEEEeCCCCee-eehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC---
Q 017962 97 NIVIDLPDWQV-IPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED--- 154 (363)
Q Consensus 97 ~vvv~~~dW~i-IPlEnliA-------~~q~~~~~l~a-----------~v~~~~eA~~~~~~LE~G~dGVvl~~~d--- 154 (363)
-++|...|--+ ||+|++-. .....+.-+|. ...+-.|+--...+.--|+|+|+|..+.
T Consensus 271 giMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavMLSgETA~G 350 (509)
T PLN02762 271 GAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMG 350 (509)
T ss_pred EEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEEEcchhcCC
Confidence 99997667654 88888643 21112222332 1345578888888999999999999664
Q ss_pred ---HHHHHHHHHhhc
Q 017962 155 ---VKAVLALKEYFD 166 (363)
Q Consensus 155 ---~~ei~~l~~~~~ 166 (363)
.+.|+-+.+++.
T Consensus 351 ~yPveaV~~m~~I~~ 365 (509)
T PLN02762 351 LYPEKALSVLRSVSL 365 (509)
T ss_pred CCHHHHHHHHHHHHH
Confidence 356666666664
No 53
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=70.78 E-value=53 Score=30.11 Aligned_cols=130 Identities=14% Similarity=0.092 Sum_probs=64.1
Q ss_pred EEEEE--eCchhHHHHHHHhCccEEEEccc---ch----hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhh
Q 017962 14 RVWIW--TESKQVMTAAVERGWNTFVFLSE---NQ----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE 84 (363)
Q Consensus 14 ~vWvw--~~~K~~vt~AlEsG~~~~v~~~~---~~----~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~ 84 (363)
.+|+- -.+.+.+..+++.|++.+++... +. +.++.+++-..+-.+-+.+|+..- +|..-. .-.++.+
T Consensus 74 pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~-~g~~~~---~~~~~~~ 149 (230)
T TIGR00007 74 PVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAV-KGWLEK---SEVSLEE 149 (230)
T ss_pred CEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEE-cCCccc---CCCCHHH
Confidence 35552 26789999999999999998742 22 333344322223233444443221 111000 0123333
Q ss_pred hhhhccccCCCceEEEeCCC----Ceeeehhhhhhcc-cCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 85 LQQLQPADGQAENIVIDLPD----WQVIPAENIVASF-QGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 85 ~e~~~~~~~~~~~vvv~~~d----W~iIPlEnliA~~-q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
+.+..... .++.+++...+ -.-+-++ ++.++ +..+..+++ .+.+.++++.++ +.|+|||++-+
T Consensus 150 ~~~~~~~~-g~~~ii~~~~~~~g~~~g~~~~-~i~~i~~~~~ipvia~GGi~~~~di~~~~---~~Gadgv~ig~ 219 (230)
T TIGR00007 150 LAKRLEEL-GLEGIIYTDISRDGTLSGPNFE-LTKELVKAVNVPVIASGGVSSIDDLIALK---KLGVYGVIVGK 219 (230)
T ss_pred HHHHHHhC-CCCEEEEEeecCCCCcCCCCHH-HHHHHHHhCCCCEEEeCCCCCHHHHHHHH---HCCCCEEEEeH
Confidence 22222222 35656643221 0111222 22222 222334554 378999998765 47999999865
No 54
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=70.58 E-value=26 Score=33.20 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=40.0
Q ss_pred CCeeeecCC---ceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 233 RPFRVNAGP---VHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 233 RPFRVNAGa---VHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
|||.++.-+ +-=+|..-|.-|.||..|+.||+|.+-...|+.- ..- ....||+++|=+
T Consensus 49 ~pySi~~~~~~~~~~~Ik~~G~~S~~L~~l~~Gd~v~v~gP~G~~f--~~~--~~~~~~~llIAg 109 (263)
T PRK08221 49 APISVSDYGDGYIDLTIRRVGKVTDEIFNLKEGDKLFLRGPYGNGF--PVD--TYKGKELIVVAG 109 (263)
T ss_pred ceeeccCCCCCEEEEEEEeCCchhhHHHhCCCCCEEEEECCCCCCc--ccC--ccCCccEEEEcc
Confidence 777776533 3344555577899999999999999988888621 111 123579998855
No 55
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=70.50 E-value=5 Score=37.35 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=44.2
Q ss_pred CCCCeeeecCC---ceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEe
Q 017962 231 ASRPFRVNAGP---VHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKT 296 (363)
Q Consensus 231 a~RPFRVNAGa---VHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~ 296 (363)
..|||-+...| ++=.|..-|.-|+||.+|+.||.|.+....|+.= ..-. +.+|+++|-+-.
T Consensus 49 ~~r~ySi~s~~~~~l~l~Vk~~G~~t~~l~~l~~G~~v~i~gP~G~~f--~l~~---~~~~~vlIagG~ 112 (250)
T PRK00054 49 LERPISISDIDKNEITILYRKVGEGTKKLSKLKEGDELDIRGPLGNGF--DLEE---IGGKVLLVGGGI 112 (250)
T ss_pred CceeeEEeeeCCCEEEEEEEEcChHHHHHhcCCCCCEEEEEcccCCCC--CCCC---CCCeEEEEeccc
Confidence 36788776544 5556666688899999999999999999888731 1111 568998887543
No 56
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=70.28 E-value=8.2 Score=38.25 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=37.0
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 166 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~~ 166 (363)
.+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++...++.
T Consensus 194 ~kIeVEv~slee~~ea---~~~gaDiImLDn~s~e~l~~av~~~~ 235 (281)
T PRK06543 194 THVEVEVDRLDQIEPV---LAAGVDTIMLDNFSLDDLREGVELVD 235 (281)
T ss_pred CcEEEEeCCHHHHHHH---HhcCCCEEEECCCCHHHHHHHHHHhC
Confidence 5799999999999876 47899999999999999988888763
No 57
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=70.25 E-value=15 Score=37.08 Aligned_cols=115 Identities=13% Similarity=0.118 Sum_probs=74.4
Q ss_pred eCchhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC---C
Q 017962 19 TESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ---A 95 (363)
Q Consensus 19 ~~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~---~ 95 (363)
.-+.++...|-+-|.-+++.. -+.+...... ..+ ++++..+++-+-+ ++++.+++..+... +
T Consensus 48 ~iN~~LA~~a~~~G~~~~~~k-~~~e~~~~~~--r~~-----------~~~~l~v~~~vg~-~~~~~~~~~~Lv~ag~~~ 112 (326)
T PRK05458 48 IIDEKIAEWLAENGYFYIMHR-FDPEARIPFI--KDM-----------HEQGLIASISVGV-KDDEYDFVDQLAAEGLTP 112 (326)
T ss_pred hhHHHHHHHHHHcCCEEEEec-CCHHHHHHHH--Hhc-----------cccccEEEEEecC-CHHHHHHHHHHHhcCCCC
Confidence 447888888889998888876 1232222111 111 1123323332222 46676776666543 4
Q ss_pred ceEEEeCCCCeeeehhhhhhcccCCC--ceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 96 ENIVIDLPDWQVIPAENIVASFQGSG--KTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 96 ~~vvv~~~dW~iIPlEnliA~~q~~~--~~l~a-~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
|.++|+..+--...+.++|+.+...- .-|++ .+.|.++|+.+ .+.|+|++.+.
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l---~~aGad~i~vg 168 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVREL---ENAGADATKVG 168 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHH---HHcCcCEEEEC
Confidence 99999999988888999999887653 34666 48888888655 46899998855
No 58
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=70.16 E-value=4.5 Score=35.26 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=32.7
Q ss_pred cceEEEecCCCCCCCCCceeeeeecCCCCEEEEEecCCCccc
Q 017962 311 AETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHT 352 (363)
Q Consensus 311 AETIrLv~p~~~~~~~g~~vsVt~Lk~GD~VL~~~~~~gRHf 352 (363)
-||||+.+|+ .-.++..+|-.+|++.+.+++.||-|
T Consensus 61 ietIrI~~pG------~YeiNl~~Lld~~~iVval~EeG~Y~ 96 (112)
T COG3364 61 IETIRILRPG------VYEINLESLLDRDEIVVALQEEGRYF 96 (112)
T ss_pred ceEEEEecCc------eEEEehhhhccCCceEEEEccCCeEE
Confidence 4999999998 56799999999999999999999865
No 59
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=69.35 E-value=9.1 Score=37.92 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=37.3
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 166 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~~ 166 (363)
..+|..++.|.+||+.+ ++.|+|.|+|+.=+|+++++..+++.
T Consensus 189 ~~kIeVEv~tleqa~ea---~~agaDiI~LDn~~~e~l~~av~~~~ 231 (284)
T PRK06096 189 EKKIVVEADTPKEAIAA---LRAQPDVLQLDKFSPQQATEIAQIAP 231 (284)
T ss_pred CCCEEEECCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 35799999999998765 68999999999999999998888763
No 60
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=68.99 E-value=15 Score=33.63 Aligned_cols=113 Identities=14% Similarity=0.123 Sum_probs=67.9
Q ss_pred chhHHHHHHHhCccEEEEcccc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 017962 21 SKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 94 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~ 94 (363)
--++.....+.|++++-+..++ .+..+.+.+... -|+...+ -+.++++.+.+.. ..
T Consensus 33 ~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~-iPi~~~~---------------~i~~~~~v~~~~~--~G 94 (217)
T cd00331 33 PVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVS-LPVLRKD---------------FIIDPYQIYEARA--AG 94 (217)
T ss_pred HHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcC-CCEEECC---------------eecCHHHHHHHHH--cC
Confidence 3578888899999987654322 222222222211 1333321 2566665454443 25
Q ss_pred CceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017962 95 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 154 (363)
Q Consensus 95 ~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d 154 (363)
++.+++...|...==+++++..+..-+...+..+.+.+|++. +++.|+|.+.+.+.|
T Consensus 95 ad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~---~~~~g~~~i~~t~~~ 151 (217)
T cd00331 95 ADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELER---ALALGAKIIGINNRD 151 (217)
T ss_pred CCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHH---HHHcCCCEEEEeCCC
Confidence 788988777765322355555444446677888899999655 556799999888655
No 61
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.98 E-value=9.8 Score=38.03 Aligned_cols=41 Identities=12% Similarity=0.043 Sum_probs=36.0
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
.+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+++
T Consensus 206 ~kIeVEvetleea~eA---~~aGaDiImLDnmspe~l~~av~~~ 246 (294)
T PRK06978 206 VPVQIEVETLAQLETA---LAHGAQSVLLDNFTLDMMREAVRVT 246 (294)
T ss_pred CcEEEEcCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHhh
Confidence 5799999999998765 6899999999999999998877765
No 62
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=68.98 E-value=4.1 Score=35.34 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=25.1
Q ss_pred CceeeeeecCCCCEEEEEecCC--Ccccceeee
Q 017962 327 EKAIPVTSLKVGDEVLLRVQGA--ARHTGIEIQ 357 (363)
Q Consensus 327 g~~vsVt~Lk~GD~VL~~~~~~--gRHfG~~I~ 357 (363)
+.+|+..+|+|||-|+.....+ ..|+||=+.
T Consensus 69 ~~~v~~~~~qpGDlvff~~~~~~~~~HvGIy~G 101 (134)
T TIGR02219 69 LVPVPCDAAQPGDVLVFRWRPGAAAKHAAIAAS 101 (134)
T ss_pred CcccchhcCCCCCEEEEeeCCCCCCcEEEEEeC
Confidence 4678888999999999987543 469999874
No 63
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=68.37 E-value=15 Score=37.37 Aligned_cols=101 Identities=17% Similarity=0.263 Sum_probs=62.9
Q ss_pred CchhHHHHHHHh---CccEEEEcccchhhhhhccceeeeeeeeecC-CccccCCCCeeEEEEEecChhhhhhhccccCCC
Q 017962 20 ESKQVMTAAVER---GWNTFVFLSENQQLAIDWSTIALLDPLFIKE-GEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 95 (363)
Q Consensus 20 ~~K~~vt~AlEs---G~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~-g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~ 95 (363)
+..+.+.+|=+- |+..+.+..+|...++.+..++-+ .+.- +..+. .|+ -|.+|+.++.+....
T Consensus 182 d~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~---avmPl~~pIG-sg~------gv~~p~~i~~~~e~~--- 248 (326)
T PRK11840 182 DMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAV---AVMPLGAPIG-SGL------GIQNPYTIRLIVEGA--- 248 (326)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCE---EEeecccccc-CCC------CCCCHHHHHHHHHcC---
Confidence 457788888888 999878888887777776666432 1111 12121 232 255777776665541
Q ss_pred ceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHHH
Q 017962 96 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAVL 159 (363)
Q Consensus 96 ~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~-----~d~~ei~ 159 (363)
+ +| .=+=|...+++||.. ++|.|+|||++.+ +||-...
T Consensus 249 ~-----------vp------------VivdAGIg~~sda~~---AmelGadgVL~nSaIa~a~dPv~Ma 291 (326)
T PRK11840 249 T-----------VP------------VLVDAGVGTASDAAV---AMELGCDGVLMNTAIAEAKNPVLMA 291 (326)
T ss_pred C-----------Cc------------EEEeCCCCCHHHHHH---HHHcCCCEEEEcceeccCCCHHHHH
Confidence 0 11 113356788888765 5789999999876 6775443
No 64
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=68.16 E-value=9.3 Score=26.11 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=19.5
Q ss_pred EEEEe-CchhHHHHHHHhCccEEEEc
Q 017962 15 VWIWT-ESKQVMTAAVERGWNTFVFL 39 (363)
Q Consensus 15 vWvw~-~~K~~vt~AlEsG~~~~v~~ 39 (363)
|-+|+ ++.+.++.++..|+|+|+.+
T Consensus 2 V~~WT~d~~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 2 VYFWTPDKPASWRELLDLGVDGIMTD 27 (30)
T ss_dssp EEEET--SHHHHHHHHHHT-SEEEES
T ss_pred eEEecCCCHHHHHHHHHcCCCEeeCC
Confidence 56677 57889999999999999864
No 65
>PLN02623 pyruvate kinase
Probab=67.99 E-value=10 Score=41.15 Aligned_cols=135 Identities=16% Similarity=0.215 Sum_probs=88.0
Q ss_pred CchhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceE
Q 017962 20 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 98 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 98 (363)
.|++.+.-|++-|+|.+-+.- .+++.++++.+. +...|..+..+.+|.+++-++.+-.-+...|-+
T Consensus 279 kD~~di~f~~~~~vD~ialSFVr~a~DV~~~r~~-------------l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgI 345 (581)
T PLN02623 279 KDWEDIKFGVENKVDFYAVSFVKDAQVVHELKDY-------------LKSCNADIHVIVKIESADSIPNLHSIITASDGA 345 (581)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCcceEEEEECCHHHHHhHHHHHHhCCEE
Confidence 478889999999999654432 123444444433 223345567888999999998887777788988
Q ss_pred EEeCCCC-eeeehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 017962 99 VIDLPDW-QVIPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED----- 154 (363)
Q Consensus 99 vv~~~dW-~iIPlEnliA-------~~q~~~~~l~a-----------~v~~~~eA~~~~~~LE~G~dGVvl~~~d----- 154 (363)
+|-..|- -=||+|.+.+ +....+.-++. ...+-.|+.-+..+++.|+|+|+|..+.
T Consensus 346 mIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~y 425 (581)
T PLN02623 346 MVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 425 (581)
T ss_pred EECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcC
Confidence 8855453 3356665433 33223333332 2233468888899999999999999763
Q ss_pred -HHHHHHHHHhhcc
Q 017962 155 -VKAVLALKEYFDG 167 (363)
Q Consensus 155 -~~ei~~l~~~~~~ 167 (363)
.+.|+-+.+++.+
T Consensus 426 PveaV~~m~~I~~~ 439 (581)
T PLN02623 426 PLKAVKVMHTVALR 439 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 3566666776643
No 66
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=67.48 E-value=52 Score=30.79 Aligned_cols=45 Identities=29% Similarity=0.369 Sum_probs=29.2
Q ss_pred Eec-CCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEEEeccceeEEEEE
Q 017962 247 LVP-GGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVKIESRPLILVEAK 295 (363)
Q Consensus 247 ~~p-ggkT~YLSEL~sG~eVLvVd~~-G~~R~~~VGRvKIE~RPLllIeAe 295 (363)
..| |.-|.||..|+.||+|.+...- |... .-. .-..+|++||=+=
T Consensus 69 ~~~~G~~S~~L~~l~~Gd~v~i~gp~~g~f~---l~~-~~~~~~~vlIagG 115 (248)
T PRK10926 69 TVPEGKLSPRLAALKPGDEVQVVSEAAGFFV---LDE-VPDCETLWMLATG 115 (248)
T ss_pred EeCCCCcChHHHhCCCCCEEEEecCCCcceE---ccC-CCCCCeEEEEEee
Confidence 345 4467899999999999998743 5331 110 1134788888653
No 67
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=67.29 E-value=27 Score=31.88 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=58.3
Q ss_pred CchhHHHHHHHhCccEEEEcccc-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceE
Q 017962 20 ESKQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 98 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~~-~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 98 (363)
...+.+..+.+.|++.+.++... .+..+.+.+ .+..+ ...+.+.++...+.. ..++++
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~~~~~~~~~~~~-----------------~~i~~--i~~v~~~~~~~~~~~--~gad~i 126 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFGPPAEVVERLKA-----------------AGIKV--IPTVTSVEEARKAEA--AGADAL 126 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHH-----------------cCCEE--EEeCCCHHHHHHHHH--cCCCEE
Confidence 56788999999999999987532 222222221 12222 234556666555443 247888
Q ss_pred EEeCCC------Ceeeehhhhhhccc-CCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 99 VIDLPD------WQVIPAENIVASFQ-GSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 99 vv~~~d------W~iIPlEnliA~~q-~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
++.... ....+...++.++. ..+..+++ .+++.++++.+ |+.|+|||++.+.
T Consensus 127 ~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~---l~~GadgV~vgS~ 187 (236)
T cd04730 127 VAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAA---LALGADGVQMGTR 187 (236)
T ss_pred EEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHH---HHcCCcEEEEchh
Confidence 874421 11012223333322 11233443 34555555544 4689999999754
No 68
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=66.70 E-value=20 Score=27.73 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=49.9
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 155 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~--~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~ 155 (363)
...+.++.-.... ....+.++++..--. .-...++..++. .+..++...++ .+......+++.|++|.+.+|-++
T Consensus 28 ~~~~~~~~~~~~~-~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t~~-~~~~~~~~~~~~g~~~~l~kp~~~ 104 (112)
T PF00072_consen 28 TASSGEEALELLK-KHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVTDE-DDSDEVQEALRAGADDYLSKPFSP 104 (112)
T ss_dssp EESSHHHHHHHHH-HSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEESS-TSHHHHHHHHHTTESEEEESSSSH
T ss_pred EECCHHHHHHHhc-ccCceEEEEEeeecc-ccccccccccccccccccEEEecCC-CCHHHHHHHHHCCCCEEEECCCCH
Confidence 4566665443332 234788888744222 233333333332 45677777744 446667788899999999999999
Q ss_pred HHHHH
Q 017962 156 KAVLA 160 (363)
Q Consensus 156 ~ei~~ 160 (363)
+++.+
T Consensus 105 ~~l~~ 109 (112)
T PF00072_consen 105 EELRA 109 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98753
No 69
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=66.13 E-value=8.1 Score=33.96 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=27.2
Q ss_pred CceeeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 017962 251 GKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVK 283 (363)
Q Consensus 251 gkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvK 283 (363)
+--+.|.+|+.||+|.+.+.+|++.+=.|=+++
T Consensus 65 ~~F~~L~~l~~GD~I~v~~~~g~~~~Y~V~~~~ 97 (144)
T cd05829 65 AVFFRLGDLRKGDKVEVTRADGQTATFRVDRVE 97 (144)
T ss_pred hhhcchhcCCCCCEEEEEECCCCEEEEEEeEEE
Confidence 445679999999999999999998887666654
No 70
>PRK14725 pyruvate kinase; Provisional
Probab=65.91 E-value=18 Score=39.69 Aligned_cols=187 Identities=22% Similarity=0.275 Sum_probs=99.3
Q ss_pred CCceEEEEcCC--HHHHHHHHHHhhcccCeEEEec--CCHHHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEE
Q 017962 120 SGKTVFAISKT--PSEAQIFLEALEQGLGGIVLKV--EDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVC 195 (363)
Q Consensus 120 ~~~~l~a~v~~--~~eA~~~~~~LE~G~dGVvl~~--~d~~ei~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVC 195 (363)
.+++|++...+ +++....-..++.|.|-.=+.- +|++.-.++.+.+.+..... |.-=++-
T Consensus 139 R~tkImvTlg~~Aa~d~e~i~~Li~aGmdvaRINcAHg~~e~w~~mi~~vR~a~~~~----------------gr~~~I~ 202 (608)
T PRK14725 139 RPTRIMVTLPTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEEL----------------GRRCRIA 202 (608)
T ss_pred CCceEEEeCCCcccCCHHHHHHHHHcCCCEeeeECCCCCHHHHHHHHHHHHHHHHHc----------------CCCEEEE
Confidence 46899999984 5678899999999999876654 56777666655553221111 1112233
Q ss_pred EeecC------CCCCCceE--------EEe--ccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEecCCceeeeeec
Q 017962 196 VDLCS------LMRPGEGL--------LVG--SFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSEL 259 (363)
Q Consensus 196 VDtcs------ll~~GEGm--------LVG--s~s~glfLVhsEt~e~~Yva~RPFRVNAGaVHaYv~~pggkT~YLSEL 259 (363)
.|+.. -+.+|-+. .-| -++.-+.|. .+. +|-..+.|-- ++ +.+ --.+|..|
T Consensus 203 mDL~GPKiRtG~l~~g~~v~~~~p~rd~~G~v~~pa~~~l~-~~~--~~~~~~~~~~-----~~--~~v---~~~~~~~l 269 (608)
T PRK14725 203 MDLAGPKLRTGPIAPGPRVIKLRPTRDALGRVLTPARLWLT-ASE--SPPPSPPPGP-----VG--LPV---DPEWLARL 269 (608)
T ss_pred EeCCCCcceEEecCCCccccccccccccccccccchhheee-ccc--CCCCCCCccc-----cc--ccc---Chhhhhhc
Confidence 33321 11111100 000 011222332 332 2211222211 11 222 34689999
Q ss_pred cCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCCCCCCce-e-eeeecCC
Q 017962 260 KSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGEQEKA-I-PVTSLKV 337 (363)
Q Consensus 260 ~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~p~~~~~~~g~~-v-sVt~Lk~ 337 (363)
+.||++...|+.|+.|.-.|-++-=+ ..+.|+.- +..+||--.+++-+-.. ..-++-| + .-..|++
T Consensus 270 ~~Gd~i~~~DaRg~~R~l~V~~~~~~---~~~~~~~~--------~~Y~~~G~~l~~~~~~~-~~v~~~p~~~~~i~L~~ 337 (608)
T PRK14725 270 EPGDELRFTDARGKKRKLTVTEVDDE---GVLAEGSQ--------TAYLANGTLLRLGRHDS-TRVGGLPPVEQKLRLKV 337 (608)
T ss_pred CCCceeeeeeccccceeeeEEeecCc---eeEEeecc--------eeeeccCceeeeccccc-cccccccccCcceEecC
Confidence 99999999999999999999887433 44444432 33444444444321110 0000111 0 1258999
Q ss_pred CCEEEEEecC
Q 017962 338 GDEVLLRVQG 347 (363)
Q Consensus 338 GD~VL~~~~~ 347 (363)
||++.+..+.
T Consensus 338 Gd~l~lt~~~ 347 (608)
T PRK14725 338 GDRLVLTRDD 347 (608)
T ss_pred CCEEEEecCC
Confidence 9999998764
No 71
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=65.90 E-value=3.3 Score=42.23 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=61.5
Q ss_pred chhHHHHHHHhCccEEEEcccchhhhhhccceee--eeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceE
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIAL--LDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 98 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~--i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 98 (363)
.++++.-|=..|+-+++++-+..-+.+..+.+.- ..| ++=.+.+-++..- ...++. ...+...++
T Consensus 136 t~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp---~~l~lknfe~~~~-----~~v~~~-----~~sg~~~~~ 202 (363)
T KOG0538|consen 136 TEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLP---KNLTLKNFEGLKL-----TEVEEA-----GDSGLAAYV 202 (363)
T ss_pred HHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCC---ccccccccccccc-----ccCCcc-----cchhhhhhh
Confidence 5899999999999999988776666655554422 111 0001111111110 011110 011111122
Q ss_pred EE---eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 99 VI---DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 99 vv---~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
.- ...+|+=|+.=.=+-.+ --|+..+-+.+||+.| .|+|++||++..-
T Consensus 203 ~~~id~Sl~W~Di~wLr~~T~L----PIvvKGilt~eDA~~A---ve~G~~GIIVSNH 253 (363)
T KOG0538|consen 203 SSQIDPSLSWKDIKWLRSITKL----PIVVKGVLTGEDARKA---VEAGVAGIIVSNH 253 (363)
T ss_pred hcCCCCCCChhhhHHHHhcCcC----CeEEEeecccHHHHHH---HHhCCceEEEeCC
Confidence 11 13489887653322221 2467788888998875 6899999998754
No 72
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=65.83 E-value=41 Score=30.36 Aligned_cols=58 Identities=26% Similarity=0.452 Sum_probs=36.5
Q ss_pred CCCeeeec-----CCceeEEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 232 SRPFRVNA-----GPVHAYVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 232 ~RPFRVNA-----GaVHaYv~~-pgg-kT~YLSE-L~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
.|||-+-. |-..=+|.. ++| -|.||.. |+.||.|.+....|..- .- ....+|+++|=+
T Consensus 50 ~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~l~~~l~~Gd~v~i~gP~G~~~--~~---~~~~~~~vliag 115 (235)
T cd06217 50 QRSYSIASSPTQRGRVELTVKRVPGGEVSPYLHDEVKVGDLLEVRGPIGTFT--WN---PLHGDPVVLLAG 115 (235)
T ss_pred eeeecccCCCCCCCeEEEEEEEcCCCcchHHHHhcCCCCCEEEEeCCceeeE--eC---CCCCceEEEEec
Confidence 46666532 334444433 444 5899975 99999999998888641 11 114588888754
No 73
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=65.16 E-value=9.6 Score=34.19 Aligned_cols=54 Identities=22% Similarity=0.403 Sum_probs=36.7
Q ss_pred CCCeeee----cCCceeEEEe-c--CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 232 SRPFRVN----AGPVHAYVLV-P--GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 232 ~RPFRVN----AGaVHaYv~~-p--ggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
+|||-+- .|-+.=.|.. | |+-|+||..|+.||+|.+-...|+... .+|+++|=+
T Consensus 47 ~r~ySi~s~~~~~~l~~~vk~~~~~g~~s~~l~~l~~G~~v~i~gP~G~~~~---------~~~~vlia~ 107 (218)
T cd06196 47 KRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGRLQPGDTLLIEDPWGAIEY---------KGPGVFIAG 107 (218)
T ss_pred ccccccccCCCCCeEEEEEEEcCCCCcHhHHHHhCCCCCEEEEECCccceEe---------cCceEEEec
Confidence 4555552 2334444544 3 456999999999999999999997531 368877654
No 74
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=65.11 E-value=28 Score=34.52 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=58.9
Q ss_pred eeeeEEEEEEEEEcCCcc-eEEEeecC-----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCC----cee
Q 017962 175 LSLMKATVTRVDVAGMGD-RVCVDLCS-----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGP----VHA 244 (363)
Q Consensus 175 l~L~~atVt~V~~vGmGd-RVCVDtcs-----ll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVNAGa----VHa 244 (363)
-...+++|++++.+.-.- ++.+..-. -++||+=+-| .-+....++...|||-+..-| .-=
T Consensus 152 ~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l----------~~~~~~~~~~~~R~ySias~p~~~~l~~ 221 (399)
T PRK13289 152 RGWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGV----------RLDPEGEEYQEIRQYSLSDAPNGKYYRI 221 (399)
T ss_pred CCcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEE----------EEecCCccccceeEEEeeeCCCCCeEEE
Confidence 346678999999876442 23333211 2344442222 111111234445888875433 222
Q ss_pred EEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 245 YVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 245 Yv~~-pgg-kT~YLSE-L~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
.|.. |+| -|.||.. |+.||+|.+-...|+..- -. -+.+|+++|=+
T Consensus 222 ~Vk~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l---~~--~~~~~~vlIag 269 (399)
T PRK13289 222 SVKREAGGKVSNYLHDHVNVGDVLELAAPAGDFFL---DV--ASDTPVVLISG 269 (399)
T ss_pred EEEECCCCeehHHHhhcCCCCCEEEEEcCcccccc---CC--CCCCcEEEEec
Confidence 3333 444 4899965 999999999888887421 11 13589988854
No 75
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=65.10 E-value=16 Score=36.00 Aligned_cols=103 Identities=10% Similarity=0.123 Sum_probs=65.5
Q ss_pred eCchhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCce
Q 017962 19 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 97 (363)
Q Consensus 19 ~~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 97 (363)
.-++.++..+|..|+.++++|- ++++.++.+-+-.+..| .|.+ + ...
T Consensus 76 ~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP-----------~G~R--------g-------------vg~ 123 (255)
T COG3836 76 VGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPP-----------LGER--------G-------------VGS 123 (255)
T ss_pred CCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCC-----------CCcc--------c-------------cch
Confidence 3467888999999999999885 45677776666655554 1211 0 000
Q ss_pred EEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh-cccCeEEEecCCHH
Q 017962 98 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE-QGLGGIVLKVEDVK 156 (363)
Q Consensus 98 vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE-~G~dGVvl~~~d~~ 156 (363)
..-...-|. ++.+-++.. +.++-+++.+.|.+--.-.=.++. -|+|||.+-|.|.+
T Consensus 124 ~~arAsr~~--~i~dyl~~A-n~~~~~lvqiEtr~gl~nLDaIaaveGVDgvFiGPaDLa 180 (255)
T COG3836 124 ALARASRFG--RIADYLAQA-NDEICLLVQIETRAGLDNLDAIAAVEGVDGVFIGPADLA 180 (255)
T ss_pred hhhhhhhcC--CHHHHHHhc-ccceEEEEEEccHHHHHHHHHHHccCCCCeEEECHHHHH
Confidence 111234677 667777764 456778888887654333333443 49999999988754
No 76
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=64.28 E-value=13 Score=36.63 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=42.2
Q ss_pred hhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017962 110 AENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 166 (363)
Q Consensus 110 lEnliA~~q~~--~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~~ 166 (363)
+++.+.++... ..+|..++.|.+||+.+ ++.|+|.|+|+.=+|+++++..+.+.
T Consensus 175 i~~av~~~r~~~~~~kIeVEv~tleea~ea---~~~GaDiI~lDn~~~e~l~~~v~~l~ 230 (277)
T TIGR01334 175 WGGAIGRLKQTAPERKITVEADTIEQALTV---LQASPDILQLDKFTPQQLHHLHERLK 230 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCHHHHHHH---HHcCcCEEEECCCCHHHHHHHHHHHh
Confidence 44555444332 46799999999998764 68999999999999999988887763
No 77
>PF11247 DUF2675: Protein of unknown function (DUF2675) ; InterPro: IPR022611 Members in this family of proteins include Bacteriophage T7 gene 5.5; they have no known function.
Probab=64.03 E-value=4.1 Score=34.92 Aligned_cols=52 Identities=25% Similarity=0.293 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHhhcccCeEEE---ecCCHHHHHHHHHhhcccccccceeeeeEEEEEEE
Q 017962 130 TPSEAQIFLEALEQGLGGIVL---KVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRV 185 (363)
Q Consensus 130 ~~~eA~~~~~~LE~G~dGVvl---~~~d~~ei~~l~~~~~~~~~~~~~l~L~~atVt~V 185 (363)
|.-+.+....+|.+|.||++- +..=-+.| |+..... .++..+.+.||||..+
T Consensus 43 ~~~~re~l~qaLT~G~egav~f~~k~g~R~~I---Ke~~~E~-s~k~~~~~sPatvR~v 97 (98)
T PF11247_consen 43 SGFQREMLVQALTHGPEGAVAFVVKQGIREAI---KEMLSEY-SDKESFKFSPATVREV 97 (98)
T ss_pred CHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH---HHHHHHh-ccccceeecCceEEee
Confidence 889999999999999999872 22212222 3444332 2567899999999865
No 78
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=63.93 E-value=15 Score=36.44 Aligned_cols=42 Identities=21% Similarity=0.101 Sum_probs=36.3
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
..+|-.++.|.+||+.+ ++.|+|.|+|++-+++++++..+.+
T Consensus 196 ~~~I~VEv~tleea~eA---~~~GaD~I~LDn~~~e~l~~av~~~ 237 (288)
T PRK07428 196 PLTIEVETETLEQVQEA---LEYGADIIMLDNMPVDLMQQAVQLI 237 (288)
T ss_pred CCEEEEECCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHH
Confidence 35799999999999865 5899999999999999998877765
No 79
>PRK06739 pyruvate kinase; Validated
Probab=63.60 E-value=22 Score=36.31 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=87.6
Q ss_pred CchhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCce
Q 017962 20 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAEN 97 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~-gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 97 (363)
+|++.+.-|++.|+|.+-..- .+++.+.++.++ +.+. +..+..+.+|.+++.++.+..-+..+|-
T Consensus 166 kD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~-------------l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDg 232 (352)
T PRK06739 166 KDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDF-------------IQQYKETSPNLIAKIETMEAIENFQDICKEADG 232 (352)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCE
Confidence 578889999999999665442 123444444433 1221 2244567789999999998888878899
Q ss_pred EEEeCCCCe-eeehhhhh-------hcccCCCceEE-E----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 017962 98 IVIDLPDWQ-VIPAENIV-------ASFQGSGKTVF-A----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 154 (363)
Q Consensus 98 vvv~~~dW~-iIPlEnli-------A~~q~~~~~l~-a----------~v~~~~eA~~~~~~LE~G~dGVvl~~~d---- 154 (363)
++|...|-- =||+|.+- ......+.-+| | ...+-.|+--.+.+..-|+|||+|..+.
T Consensus 233 imVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~ 312 (352)
T PRK06739 233 IMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGE 312 (352)
T ss_pred EEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCC
Confidence 999666654 37777653 22222222233 2 2345578888899999999999999553
Q ss_pred --HHHHHHHHHhhc
Q 017962 155 --VKAVLALKEYFD 166 (363)
Q Consensus 155 --~~ei~~l~~~~~ 166 (363)
.+.|+-+++++.
T Consensus 313 yPveaV~~m~~I~~ 326 (352)
T PRK06739 313 HPIESVSTLRLVSE 326 (352)
T ss_pred CHHHHHHHHHHHHH
Confidence 356666666653
No 80
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=63.27 E-value=28 Score=35.68 Aligned_cols=168 Identities=16% Similarity=0.144 Sum_probs=86.4
Q ss_pred CCCCeeeehhhhhhcccCCCceEEEEcCCHHH---HHHHHHHh--hcccCeEEEecCCHHHHHHHHHhhcccccccceee
Q 017962 102 LPDWQVIPAENIVASFQGSGKTVFAISKTPSE---AQIFLEAL--EQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLS 176 (363)
Q Consensus 102 ~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~e---A~~~~~~L--E~G~dGVvl~~~d~~ei~~l~~~~~~~~~~~~~l~ 176 (363)
...|.-.|.+.-.|.++..... -+... .++ ....+.+. ..|+-|-.+.|-+.. +-++..-+ -...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~-- 142 (411)
T TIGR03224 73 QLTWDELPEEVTLPEAAAEPAA-AAGQD-DEEPSRGSKSSGVQEVEAAQHGSTRAPWSAA-----HPYVNLYG-VKAP-- 142 (411)
T ss_pred eeccccCCCcCChhhhhhCCcc-ccccC-ccccccchhhhhhhhhccccCCCCCCCcccc-----CCcccccc-CCCC--
Confidence 3488999988888776544221 11111 122 23333333 677777777666433 12221111 1111
Q ss_pred eeEEEEEEEEEcCC---cceEE---EeecC---CCCCCceEEEeccCceEEEEeeccc--cCCCCCCCCeeeecCC----
Q 017962 177 LMKATVTRVDVAGM---GDRVC---VDLCS---LMRPGEGLLVGSFARGLFLVHSECL--ESNYIASRPFRVNAGP---- 241 (363)
Q Consensus 177 L~~atVt~V~~vGm---GdRVC---VDtcs---ll~~GEGmLVGs~s~glfLVhsEt~--e~~Yva~RPFRVNAGa---- 241 (363)
..|+|+.++.+.- .+.|. +|.-. -+.||+=+.| ...-+. ..|+ -.|||-+---+
T Consensus 143 -~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l---------~~pg~~~~g~~~-~~R~YSIas~~~~~~ 211 (411)
T TIGR03224 143 -ITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGI---------LPPGTDASGKPH-YARMYSVASPRNGER 211 (411)
T ss_pred -eEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEE---------ecCCcCcCCCcC-cceeeeecCCCCccC
Confidence 3489999998842 33333 44322 1344443222 111111 1122 24666653211
Q ss_pred -----c-eeEEEec---------CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 242 -----V-HAYVLVP---------GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 242 -----V-HaYv~~p---------ggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
+ ..|-.+| |--|+||++|+.||+|.+....|+.-... .-..+|++||=+
T Consensus 212 ~~~~~l~l~Vk~v~~~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~lp----~~~~~~lllIag 275 (411)
T TIGR03224 212 PGYNNLALTVKRVTTDHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMP----NHPESSIMMICT 275 (411)
T ss_pred CCCCEEEEEEEEEEecCCCCcCcccchhHHhcCCCcCEEEEEeccCCcccCC----CCCCCCEEEEec
Confidence 1 2333444 55799999999999999999989742211 112478888743
No 81
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=63.01 E-value=55 Score=32.99 Aligned_cols=122 Identities=12% Similarity=0.105 Sum_probs=68.6
Q ss_pred EEEEEeCchhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC
Q 017962 14 RVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 93 (363)
Q Consensus 14 ~vWvw~~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~ 93 (363)
.=|.|--...-+.+-..+++|-+|+++.+.. .+-+.. ++ ..=..++..|+.+-.|+.|..-|+-..-.
T Consensus 46 ~~W~~ql~~~~~~~i~~~~~d~vVID~~~~g--~~~~~f---s~---~~i~~Lk~~g~~viaYlSvGe~E~~R~y~---- 113 (315)
T TIGR01370 46 QHWGYQLQNADLNEIHTSPFELVVIDYSKDG--TEDGTY---SP---EEIVRAAAAGRWPIAYLSIGAAEDYRFYW---- 113 (315)
T ss_pred ceEEEEeCCCChhhhhccCCCEEEEcccccc--CcccCC---CH---HHHHHHHhCCcEEEEEEEchhccccchhh----
Confidence 3566643333333444788999998875320 000000 00 00012345688888999998776611110
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHH----HHHhhcccCeEEEecCCH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIF----LEALEQGLGGIVLKVEDV 155 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~----~~~LE~G~dGVvl~~~d~ 155 (363)
..+|+.+|..-|+..-.+=.+.-+.-..+++=-..+ -.++++|.|||.|++=|.
T Consensus 114 --------~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~kGfDGvfLD~lDs 171 (315)
T TIGR01370 114 --------QKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIAQGFDGVYLDLIDA 171 (315)
T ss_pred --------hhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHHHHHHHHcCCCeEeeccchh
Confidence 226777888777776555434555556665433332 345689999999987554
No 82
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=62.69 E-value=7.4 Score=37.25 Aligned_cols=57 Identities=23% Similarity=0.379 Sum_probs=39.5
Q ss_pred CCCeeeec-----CCceeEEEecCCceeeeeeccCCCeEE-EEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 232 SRPFRVNA-----GPVHAYVLVPGGKTCYLSELKSGKEVI-VVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 232 ~RPFRVNA-----GaVHaYv~~pggkT~YLSEL~sG~eVL-vVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
.|||-+-. |-+-=++..-|.-|+||++|+.||+|+ +...-|+.-.. . +.+|+++|=+
T Consensus 44 ~rpySias~~~~~~~i~l~vk~~G~~T~~L~~l~~Gd~v~~i~GP~G~~~~~-----~-~~~~~llIaG 106 (281)
T PRK06222 44 RIPLTIADYDREKGTITIVFQAVGKSTRKLAELKEGDSILDVVGPLGKPSEI-----E-KFGTVVCVGG 106 (281)
T ss_pred ceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhcCCCCCEEeeEEcCCCCCccc-----C-CCCeEEEEeC
Confidence 46777632 223344555688999999999999995 99999985321 1 2468887754
No 83
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=62.11 E-value=47 Score=30.14 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=61.1
Q ss_pred chhHHHHHHHhCccE--EEEcccc-----hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-Chhhhhhhcccc
Q 017962 21 SKQVMTAAVERGWNT--FVFLSEN-----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPAD 92 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~--~v~~~~~-----~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~~ 92 (363)
+.+.+..|++.|+|. |++.+.. .+.++++.++. + +.-+.|+++ +. +.+++..++...
T Consensus 8 ~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~---~----------~~~~~V~v~--vn~~~~~i~~ia~~~ 72 (203)
T cd00405 8 TLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAAL---P----------PFVKRVGVF--VNEDLEEILEIAEEL 72 (203)
T ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhC---C----------CCCcEEEEE--eCCCHHHHHHHHHhc
Confidence 467889999999995 5654322 23333443331 1 111334442 22 345555555544
Q ss_pred CCCceEEEeCCCCeeeehhhhhhcccC-CCceEE--EEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017962 93 GQAENIVIDLPDWQVIPAENIVASFQG-SGKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVEDV 155 (363)
Q Consensus 93 ~~~~~vvv~~~dW~iIPlEnliA~~q~-~~~~l~--a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~ 155 (363)
..+.|-+...+ |.+. +.++.. .+.+++ ..+++..+... ......|+|.+++++...
T Consensus 73 -~~d~Vqlhg~e----~~~~-~~~l~~~~~~~~i~~i~~~~~~~~~~-~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 73 -GLDVVQLHGDE----SPEY-CAQLRARLGLPVIKAIRVKDEEDLEK-AAAYAGEVDAILLDSKSG 131 (203)
T ss_pred -CCCEEEECCCC----CHHH-HHHHHhhcCCcEEEEEecCChhhHHH-hhhccccCCEEEEcCCCC
Confidence 57889897766 3332 222221 122344 44555444433 455678999999988643
No 84
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=61.91 E-value=26 Score=33.70 Aligned_cols=113 Identities=13% Similarity=0.147 Sum_probs=75.1
Q ss_pred chhHHHHHHHhCccEEEEcccc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 017962 21 SKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 94 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~ 94 (363)
-.++.....+.|++++-+..+. .+..+...+...+ |+..+| -|.++-+++++. ...
T Consensus 72 ~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~i-Pvl~kd---------------fi~~~~qi~~a~--~~G 133 (260)
T PRK00278 72 PVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSL-PVLRKD---------------FIIDPYQIYEAR--AAG 133 (260)
T ss_pred HHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCC-CEEeee---------------ecCCHHHHHHHH--HcC
Confidence 3778888889999997663321 2333333332111 333211 266666544443 336
Q ss_pred CceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017962 95 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 154 (363)
Q Consensus 95 ~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d 154 (363)
+|.+.+...+...--++.++...+.-+-.+++.+.|.+|++.+ ++.|+|=|-+.+.|
T Consensus 134 AD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A---~~~gadiIgin~rd 190 (260)
T PRK00278 134 ADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERA---LKLGAPLIGINNRN 190 (260)
T ss_pred CCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH---HHcCCCEEEECCCC
Confidence 7888888877654458889988888888999999999999774 46799988877644
No 85
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=61.42 E-value=12 Score=39.18 Aligned_cols=135 Identities=19% Similarity=0.292 Sum_probs=80.1
Q ss_pred CchhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCC-CeeEEEEEecChhhhhhhccccCCCce
Q 017962 20 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGD-RRVGSIIEVSTPQELQQLQPADGQAEN 97 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~g-k~v~~~~~v~~~e~~e~~~~~~~~~~~ 97 (363)
.|++-+..+++.|+|.+.++. ++++.+..+.+. +...+ ..+..+..|.+++-++.+..-+...+-
T Consensus 172 kD~~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~-------------l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dg 238 (473)
T TIGR01064 172 KDKKDLKFGVEQGVDMVAASFVRTAEDVLEVREV-------------LGEKGAKDVKIIAKIENQEGVDNIDEIAEASDG 238 (473)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCCceEEEEECCHHHHHhHHHHHhhCCc
Confidence 477889999999999999886 233333333322 11112 234567789999988887666544566
Q ss_pred EEEeCCCCee-eehh-------hhhhcccCCCceEEEEc-------C----CHHHHHHHHHHhhcccCeEEEecCC----
Q 017962 98 IVIDLPDWQV-IPAE-------NIVASFQGSGKTVFAIS-------K----TPSEAQIFLEALEQGLGGIVLKVED---- 154 (363)
Q Consensus 98 vvv~~~dW~i-IPlE-------nliA~~q~~~~~l~a~v-------~----~~~eA~~~~~~LE~G~dGVvl~~~d---- 154 (363)
+++-..|-.. +|.+ .++.+....+..++... . +-.|+.-+..+++.|+|+|+|..+.
T Consensus 239 i~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~ 318 (473)
T TIGR01064 239 IMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGK 318 (473)
T ss_pred EEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCC
Confidence 6664433221 1222 22322222232333222 2 2347777888899999999997663
Q ss_pred --HHHHHHHHHhhcc
Q 017962 155 --VKAVLALKEYFDG 167 (363)
Q Consensus 155 --~~ei~~l~~~~~~ 167 (363)
.+.|+-+.+++.+
T Consensus 319 yP~~~v~~m~~I~~~ 333 (473)
T TIGR01064 319 YPVEAVKMMAKIAKE 333 (473)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3567777777643
No 86
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=61.41 E-value=8 Score=35.61 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=40.5
Q ss_pred CCCCeeee-----cCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 231 ASRPFRVN-----AGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 231 a~RPFRVN-----AGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
..|||-+- .|-+.=.+..-|..|+||..++.||+|.+....|+.-. . -+ +.+|++||=+
T Consensus 42 ~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~~~~G~~l~i~gP~G~~~~--~--~~-~~~~~lliag 105 (243)
T cd06192 42 ERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAELKPGEKLDVMGPLGNGFE--G--PK-KGGTVLLVAG 105 (243)
T ss_pred eeeeeEeeecCCCCCEEEEEEEEcCchHHHHHhCCCCCEEEEEccCCCCCc--c--CC-CCCEEEEEeC
Confidence 35777762 23344455556888999999999999999999886421 1 01 3678888754
No 87
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=61.28 E-value=12 Score=35.51 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=41.3
Q ss_pred CCCeeeecCC---ceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEE
Q 017962 232 SRPFRVNAGP---VHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 295 (363)
Q Consensus 232 ~RPFRVNAGa---VHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe 295 (363)
.|||.+.... ..=+|..-|..|.||..|+.||+|.+-...|+.- ..-+ ...||+++|=+-
T Consensus 46 ~~pySi~~~~~~~l~~~Vk~~G~~S~~L~~l~~Gd~v~i~gP~G~~f--~~~~--~~~~~~llIAgG 108 (261)
T TIGR02911 46 EAPISVSGIGEGYIDLTIRRVGKVTDEVFTLKEGDNLFLRGPYGNGF--DVDN--YKHKELVVVAGG 108 (261)
T ss_pred ccceecCCCCCCeEEEEEEeCchhhHHHHcCCCCCEEEEecCCCCCc--ccCc--cCCceEEEEecc
Confidence 3777775532 3445555688899999999999999988888731 1111 135898888653
No 88
>PLN02461 Probable pyruvate kinase
Probab=61.22 E-value=23 Score=38.04 Aligned_cols=207 Identities=16% Similarity=0.159 Sum_probs=122.4
Q ss_pred CchhHH-HHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCce
Q 017962 20 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 97 (363)
Q Consensus 20 ~~K~~v-t~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 97 (363)
.||+.+ .-|++-|+|.+-+.- .+++.++++.++ +...|+.+..+.+|.+++.++.+..-+..+|-
T Consensus 194 kD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~-------------l~~~~~~~~IiAKIE~~~av~nl~eIi~~sDg 260 (511)
T PLN02461 194 KDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKV-------------LGEHAKSILLISKVENQEGLDNFDDILAESDA 260 (511)
T ss_pred HHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHH-------------HHhCCCCCCEEEEECCHHHHHHHHHHHHhcCE
Confidence 467776 689999999655432 123444444433 22334556678899999999999888888999
Q ss_pred EEEeCCCCee-eehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 017962 98 IVIDLPDWQV-IPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 154 (363)
Q Consensus 98 vvv~~~dW~i-IPlEnliA-------~~q~~~~~l~a-----------~v~~~~eA~~~~~~LE~G~dGVvl~~~d---- 154 (363)
++|...|--+ ||+|++-. .....+.-+|. ...+-.|+--.+.+..-|+|+|+|..+.
T Consensus 261 IMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ETA~G~ 340 (511)
T PLN02461 261 FMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGA 340 (511)
T ss_pred EEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechhcCCC
Confidence 9996666543 77777632 22222222332 1345578888889999999999999553
Q ss_pred --HHHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCC
Q 017962 155 --VKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIAS 232 (363)
Q Consensus 155 --~~ei~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~ 232 (363)
.+.|+-+.+++.+.+.......+-....+. .. + -+.+-+ + +.+|=+ +.
T Consensus 341 yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~---~~--~--------~~~~~~---------~--ia~sav----~~-- 390 (511)
T PLN02461 341 YPELAVKTMARICREAEASLDYGALFKEIMRS---AP--L--------PMSPLE---------S--LASSAV----RT-- 390 (511)
T ss_pred CHHHHHHHHHHHHHHHHhccchhhhhhhhccc---cc--c--------cCChHH---------H--HHHHHH----HH--
Confidence 356666777664321100000000000000 00 0 000000 0 000000 01
Q ss_pred CCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCC
Q 017962 233 RPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQK 271 (363)
Q Consensus 233 RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~ 271 (363)
-.++||.+.=.|+.. |...+++|-.|+--.|+++-.+
T Consensus 391 -A~~l~a~aIiv~T~s-G~tA~~iSk~RP~~pIia~t~~ 427 (511)
T PLN02461 391 -ANKVKASLIVVLTRG-GTTARLVAKYRPAVPILSVVVP 427 (511)
T ss_pred -HHhCCCCEEEEECCC-cHHHHHHHhhCCCCCEEEEecC
Confidence 135789999999886 8889999999999999998644
No 89
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=60.54 E-value=75 Score=29.70 Aligned_cols=122 Identities=18% Similarity=0.163 Sum_probs=72.7
Q ss_pred chhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEE
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 100 (363)
-.+++.++++.|+..+=++-.+..-.+.+..+..-.+ ....+ --..|.++++.+.+... .+++++.
T Consensus 24 ~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~-----------~~~~i-GaGTV~~~~~~~~a~~a--GA~fivs 89 (206)
T PRK09140 24 ALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALG-----------DRALI-GAGTVLSPEQVDRLADA--GGRLIVT 89 (206)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcC-----------CCcEE-eEEecCCHHHHHHHHHc--CCCEEEC
Confidence 3678899999999987776543322222222211000 00112 22468899987665433 5678877
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHHhh
Q 017962 101 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEYF 165 (363)
Q Consensus 101 ~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~---d~~ei~~l~~~~ 165 (363)
-..|- .++...+..+.-++..+.|++|+.. +.+.|+|=|-+-|. .++.+++++..+
T Consensus 90 p~~~~------~v~~~~~~~~~~~~~G~~t~~E~~~---A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~ 148 (206)
T PRK09140 90 PNTDP------EVIRRAVALGMVVMPGVATPTEAFA---ALRAGAQALKLFPASQLGPAGIKALRAVL 148 (206)
T ss_pred CCCCH------HHHHHHHHCCCcEEcccCCHHHHHH---HHHcCCCEEEECCCCCCCHHHHHHHHhhc
Confidence 44442 3333344445567888999999755 55789999987443 356666666554
No 90
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=60.48 E-value=27 Score=34.33 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=21.9
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHH
Q 017962 127 ISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV 158 (363)
Q Consensus 127 ~v~~~~eA~~~~~~LE~G~dGVvl~~-----~d~~ei 158 (363)
.+.+++||+.+ +|.|+|||++.+ +||..+
T Consensus 183 GI~tpeda~~A---melGAdgVlV~SAIt~a~dP~~m 216 (248)
T cd04728 183 GIGTPSDAAQA---MELGADAVLLNTAIAKAKDPVAM 216 (248)
T ss_pred CCCCHHHHHHH---HHcCCCEEEEChHhcCCCCHHHH
Confidence 46789998765 559999999865 567654
No 91
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=60.10 E-value=30 Score=34.94 Aligned_cols=114 Identities=11% Similarity=0.043 Sum_probs=66.9
Q ss_pred eCchhHHHHHHHhCccEEEEcccchhh-hhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC---
Q 017962 19 TESKQVMTAAVERGWNTFVFLSENQQL-AIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--- 94 (363)
Q Consensus 19 ~~~K~~vt~AlEsG~~~~v~~~~~~~~-~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~--- 94 (363)
.-+.++...|-+-|.-+++..- +.+. .+... .+ ++++..++. .-=.++++++++..+...
T Consensus 45 ~in~~LA~~a~~~G~~~i~hK~-~~E~~~sfvr---k~-----------k~~~L~v~~-SvG~t~e~~~r~~~lv~a~~~ 108 (321)
T TIGR01306 45 IIDEKLAEQLAENGYFYIMHRF-DEESRIPFIK---DM-----------QERGLFASI-SVGVKACEYEFVTQLAEEALT 108 (321)
T ss_pred hhhHHHHHHHHHcCCEEEEecC-CHHHHHHHHH---hc-----------cccccEEEE-EcCCCHHHHHHHHHHHhcCCC
Confidence 3478899999999999988872 2222 22111 11 112222222 122367777887777654
Q ss_pred CceEEEeCCCCeeeehhhhhhcccCCC--ceEEEE-cCCHHHHHHHHHHhhcccCeEEEe
Q 017962 95 AENIVIDLPDWQVIPAENIVASFQGSG--KTVFAI-SKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 95 ~~~vvv~~~dW~iIPlEnliA~~q~~~--~~l~a~-v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
.++++++...=--..+-+.|..+...- .-+++. +.+.+.|+.+ ++.|+|||.+.
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l---~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVREL---ENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHH---HHcCcCEEEEC
Confidence 499999775444445555555554321 224444 6677766655 56899999877
No 92
>PRK00208 thiG thiazole synthase; Reviewed
Probab=59.63 E-value=30 Score=34.08 Aligned_cols=30 Identities=33% Similarity=0.367 Sum_probs=22.3
Q ss_pred EEcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHH
Q 017962 126 AISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV 158 (363)
Q Consensus 126 a~v~~~~eA~~~~~~LE~G~dGVvl~~-----~d~~ei 158 (363)
+.+.+++||..+ +|.|+|||++.+ +||..+
T Consensus 182 aGI~tpeda~~A---melGAdgVlV~SAItka~dP~~m 216 (250)
T PRK00208 182 AGIGTPSDAAQA---MELGADAVLLNTAIAVAGDPVAM 216 (250)
T ss_pred CCCCCHHHHHHH---HHcCCCEEEEChHhhCCCCHHHH
Confidence 346788888765 558999999865 567664
No 93
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=59.10 E-value=39 Score=31.20 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=65.1
Q ss_pred CchhHHHHHHHhCccEEEEcccch------hhhhhccceeee--eeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017962 20 ESKQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALL--DPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 91 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~~~------~~~~~~~~i~~i--~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~ 91 (363)
+--+++..+.+.|++.+.+.+-+. .....+.++..- -|+.+.+| |.+.++.+.+..
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GG---------------i~~~~~~~~~~~- 96 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGG---------------IRSAEDAASLLD- 96 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCC---------------cCCHHHHHHHHH-
Confidence 457888999999999877765332 111122222111 13343333 788888777664
Q ss_pred cCCCceEEEeCCCCeee-ehhhhhhcccCCCceEEEEcC---------------CHHHHHHHHHHhhcccCeEEEecC
Q 017962 92 DGQAENIVIDLPDWQVI-PAENIVASFQGSGKTVFAISK---------------TPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 92 ~~~~~~vvv~~~dW~iI-PlEnliA~~q~~~~~l~a~v~---------------~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
..++.+++.....+-. +++.+...+.. .+++..+. +.+-...+....+.|++.+++..-
T Consensus 97 -~Ga~~v~iGs~~~~~~~~~~~i~~~~g~--~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~ 171 (241)
T PRK13585 97 -LGVDRVILGTAAVENPEIVRELSEEFGS--ERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNV 171 (241)
T ss_pred -cCCCEEEEChHHhhChHHHHHHHHHhCC--CcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEee
Confidence 3577888855443222 35666666542 24543332 112234455557899999998654
No 94
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=58.78 E-value=13 Score=32.94 Aligned_cols=50 Identities=30% Similarity=0.400 Sum_probs=37.8
Q ss_pred CCceeEEEec--CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 240 GPVHAYVLVP--GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 240 GaVHaYv~~p--ggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
|-++=++..- |.-|+||.+++.||+|.+-...|+... -.-..+|+++|=+
T Consensus 54 ~~~~l~vk~~~~G~~s~~l~~~~~G~~v~i~gP~G~~~~-----~~~~~~~~v~ia~ 105 (223)
T cd00322 54 GELELTVKIVPGGPFSAWLHDLKPGDEVEVSGPGGDFFL-----PLEESGPVVLIAG 105 (223)
T ss_pred CeEEEEEEEeCCCchhhHHhcCCCCCEEEEECCCccccc-----CcccCCcEEEEec
Confidence 4566666665 889999999999999999999998641 1123578888865
No 95
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=58.75 E-value=24 Score=37.44 Aligned_cols=134 Identities=18% Similarity=0.223 Sum_probs=86.1
Q ss_pred CchhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceE
Q 017962 20 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 98 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 98 (363)
+|++.+.-|++-|+|.+-+.- .+++.++++..+ +...|..+..+.+|.+++.++.+..-+...|-+
T Consensus 175 kD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~-------------l~~~~~~~~iiakIEt~~av~nldeI~~~~DgI 241 (480)
T cd00288 175 KDKADLRFGVEQGVDMIFASFVRKASDVLEIREV-------------LGEKGKDIKIIAKIENQEGVNNFDEILEASDGI 241 (480)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCceEEEEECCHHHHHhHHHHHHhcCEE
Confidence 578899999999999765542 223444444433 122244566778999999988877766668888
Q ss_pred EEeCCCCe-eeehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 017962 99 VIDLPDWQ-VIPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED----- 154 (363)
Q Consensus 99 vv~~~dW~-iIPlEnliA-------~~q~~~~~l~a-----------~v~~~~eA~~~~~~LE~G~dGVvl~~~d----- 154 (363)
++-..|-. =+|.|.+.+ .....+.-++. ...+-.|+--.+.+..-|+|||+|..+.
T Consensus 242 mIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~y 321 (480)
T cd00288 242 MVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKY 321 (480)
T ss_pred EECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCC
Confidence 88555543 246666543 22222222222 1344578888889999999999996654
Q ss_pred -HHHHHHHHHhhc
Q 017962 155 -VKAVLALKEYFD 166 (363)
Q Consensus 155 -~~ei~~l~~~~~ 166 (363)
.+.|+-+.+++.
T Consensus 322 PveaV~~m~~I~~ 334 (480)
T cd00288 322 PVEAVKAMARICL 334 (480)
T ss_pred HHHHHHHHHHHHH
Confidence 356666777764
No 96
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=58.71 E-value=21 Score=35.79 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=35.4
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
.+|..+|.|.+||+. +++.|+|.|+|+.=++++++++.+.+
T Consensus 209 ~kIeVEv~sleea~e---a~~~gaDiI~LDn~s~e~~~~av~~~ 249 (296)
T PRK09016 209 VPVEVEVENLDELDQ---ALKAGADIIMLDNFTTEQMREAVKRT 249 (296)
T ss_pred CCEEEEeCCHHHHHH---HHHcCCCEEEeCCCChHHHHHHHHhh
Confidence 579999999999865 56799999999999999998777754
No 97
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=57.88 E-value=27 Score=33.02 Aligned_cols=115 Identities=11% Similarity=0.122 Sum_probs=59.6
Q ss_pred CchhHHHHHHHhCccEEEEcc---cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccccCCC
Q 017962 20 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQA 95 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~---~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~e~~e~~~~~~~~~ 95 (363)
.-.+.+..+.+.|+|+++++. +..+...++-+ .+++.|.+.+..+.-.+ .+.++.+.. ..
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~-------------~~~~~Gl~~~~~v~p~T~~e~l~~~~~---~~ 152 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVE-------------IIKNKGLKPVFFTSPKFPDLLIHRLSK---LS 152 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHH-------------HHHHcCCCEEEEECCCCCHHHHHHHHH---hC
Confidence 445668899999999999973 11111111111 12344555555444444 344444443 33
Q ss_pred ceEE-Ee---CCCCeeeeh-hhhhhcccCCC--ceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 96 ENIV-ID---LPDWQVIPA-ENIVASFQGSG--KTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 96 ~~vv-v~---~~dW~iIPl-EnliA~~q~~~--~~l~--a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
+.++ +. ..+.+.+|- .+.+..+.... ..|+ ..++|.++++ .+++.|+||+|+-+.
T Consensus 153 ~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~---~~~~~gaD~vvvGSa 216 (244)
T PRK13125 153 PLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDAR---DALSAGADGVVVGTA 216 (244)
T ss_pred CCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHH---HHHHcCCCEEEECHH
Confidence 4333 32 124443332 33444443221 1233 2356666665 456899999998763
No 98
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=57.62 E-value=28 Score=36.76 Aligned_cols=119 Identities=17% Similarity=0.108 Sum_probs=70.2
Q ss_pred CchhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEE
Q 017962 20 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 99 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vv 99 (363)
+..+.+.+.+|.|+|.+.++..|-.....|..+..+...+ + +..+.+ ..|.++++...+.. ..++.+.
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~-------~--~~~v~a-G~V~t~~~a~~~~~--aGad~I~ 308 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNY-------P--HVDIIA-GNVVTADQAKNLID--AGADGLR 308 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhC-------C--CceEEE-CCcCCHHHHHHHHH--cCCCEEE
Confidence 4689999999999999998874311111122222222100 0 122222 36888888666554 2567776
Q ss_pred Ee-C----------CCCe---eeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 100 ID-L----------PDWQ---VIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 100 v~-~----------~dW~---iIPlEnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
+. + .+|- +-.+.++...++..+..+|+ .+.+..|+-. +|..|+|+|++-+-
T Consensus 309 vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~k---Ala~GA~~Vm~G~~ 375 (495)
T PTZ00314 309 IGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICK---ALALGADCVMLGSL 375 (495)
T ss_pred ECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHH---HHHcCCCEEEECch
Confidence 52 1 1232 22334444444445678999 8999988755 56699999998764
No 99
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=57.52 E-value=8.2 Score=32.25 Aligned_cols=19 Identities=42% Similarity=0.517 Sum_probs=16.7
Q ss_pred ecCCCCEEEEEecCCCccc
Q 017962 334 SLKVGDEVLLRVQGAARHT 352 (363)
Q Consensus 334 ~Lk~GD~VL~~~~~~gRHf 352 (363)
.||+||+|++.-.++|-+|
T Consensus 76 ~Lk~GD~V~ll~~~~gQ~y 94 (100)
T PF10844_consen 76 GLKVGDKVLLLRVQGGQKY 94 (100)
T ss_pred CCcCCCEEEEEEecCCCEE
Confidence 7999999999988777776
No 100
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=57.00 E-value=53 Score=29.38 Aligned_cols=108 Identities=16% Similarity=0.090 Sum_probs=60.5
Q ss_pred chhHHHHHHHhCccEEEEcccc---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCce
Q 017962 21 SKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 97 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~---~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 97 (363)
-.+.+..+++.|++.+.++..+ .++.+...++..+. .+.+.. +-|.+.-++ +.. -+++-
T Consensus 14 ~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~----------~~~~~~----liin~~~~l---a~~-~~~dG 75 (180)
T PF02581_consen 14 FLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELC----------QKYGVP----LIINDRVDL---ALE-LGADG 75 (180)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHH----------HHTTGC----EEEES-HHH---HHH-CT-SE
T ss_pred HHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHh----------hcceEE----EEecCCHHH---HHh-cCCCE
Confidence 4678999999999999998744 23322222222111 011111 124443332 222 24567
Q ss_pred EEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 98 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 98 vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
+=+...|+ |....-..++ .+..|-+.+.|.+|++.+ .+.|+|=|.+.|=
T Consensus 76 vHl~~~~~---~~~~~r~~~~-~~~~ig~S~h~~~e~~~a---~~~g~dYv~~gpv 124 (180)
T PF02581_consen 76 VHLGQSDL---PPAEARKLLG-PDKIIGASCHSLEEAREA---EELGADYVFLGPV 124 (180)
T ss_dssp EEEBTTSS---SHHHHHHHHT-TTSEEEEEESSHHHHHHH---HHCTTSEEEEETS
T ss_pred EEeccccc---chHHhhhhcc-cceEEEeecCcHHHHHHh---hhcCCCEEEECCc
Confidence 77766665 4444444332 345788899999996554 4899999999764
No 101
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=56.86 E-value=13 Score=36.69 Aligned_cols=49 Identities=22% Similarity=0.453 Sum_probs=35.4
Q ss_pred CCceeEEEe-cCCc-eeee-eeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 240 GPVHAYVLV-PGGK-TCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 240 GaVHaYv~~-pggk-T~YL-SEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
|-..=+|.. |+|+ |+|| +.|+.||.|.+-...|+.. . .-..+|+++|=+
T Consensus 166 ~~l~~~ik~~~~G~~s~~L~~~l~~G~~v~i~gP~G~f~---l---~~~~~~~vliag 217 (340)
T PRK11872 166 NQLQFLIRLLPDGVMSNYLRERCQVGDEILFEAPLGAFY---L---REVERPLVFVAG 217 (340)
T ss_pred CeEEEEEEECCCCcchhhHhhCCCCCCEEEEEcCcceeE---e---CCCCCcEEEEeC
Confidence 445555554 7776 7899 5799999999999999753 1 123589998854
No 102
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=56.46 E-value=24 Score=35.59 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=35.1
Q ss_pred ceEEEEcCCHHHHHHHHHHhh------cccCeEEEecC---------CHHHHHHHHHhh
Q 017962 122 KTVFAISKTPSEAQIFLEALE------QGLGGIVLKVE---------DVKAVLALKEYF 165 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE------~G~dGVvl~~~---------d~~ei~~l~~~~ 165 (363)
.+|..+|.|.+||+.++ + .|+|.|+|+.= +++++++..+.+
T Consensus 204 ~kIeVEv~tleea~ea~---~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~ 259 (308)
T PLN02716 204 MKIEVETRTLEEVKEVL---EYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELI 259 (308)
T ss_pred eeEEEEECCHHHHHHHH---HhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhh
Confidence 57999999999988665 6 79999999999 999887776655
No 103
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=56.44 E-value=1.3e+02 Score=27.62 Aligned_cols=99 Identities=23% Similarity=0.401 Sum_probs=57.5
Q ss_pred eEEEEEEEEEcCCcc-eEEEeec----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee-----cCCceeEEE
Q 017962 178 MKATVTRVDVAGMGD-RVCVDLC----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN-----AGPVHAYVL 247 (363)
Q Consensus 178 ~~atVt~V~~vGmGd-RVCVDtc----sll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVN-----AGaVHaYv~ 247 (363)
-.++|++++++.-.- ++++..- .-++||+=+.+. .. ++-..|||-+- .|-++=++.
T Consensus 7 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~----------~~----~~~~~r~ySi~s~~~~~~~l~l~i~ 72 (238)
T cd06211 7 FEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQ----------AP----GYEGTRAFSIASSPSDAGEIELHIR 72 (238)
T ss_pred EeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEE----------cC----CCCCccccccCCCCCCCCEEEEEEE
Confidence 368888888886322 1233321 134555544332 11 11135777763 244444555
Q ss_pred e-cCC-ceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEE
Q 017962 248 V-PGG-KTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 295 (363)
Q Consensus 248 ~-pgg-kT~YLS-EL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe 295 (363)
. |+| -|+||. .|+.||.|.+....|+...- .-..+|+++|=+-
T Consensus 73 ~~~~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~-----~~~~~~~v~iagG 118 (238)
T cd06211 73 LVPGGIATTYVHKQLKEGDELEISGPYGDFFVR-----DSDQRPIIFIAGG 118 (238)
T ss_pred ECCCCcchhhHhhcCCCCCEEEEECCccceEec-----CCCCCCEEEEeCC
Confidence 4 566 599995 79999999999998875211 1123788887553
No 104
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=56.43 E-value=63 Score=28.11 Aligned_cols=73 Identities=25% Similarity=0.284 Sum_probs=48.7
Q ss_pred CCeEEEEc-CCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCCCCCCceeeeeecCCCCE
Q 017962 262 GKEVIVVD-QKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGEQEKAIPVTSLKVGDE 340 (363)
Q Consensus 262 G~eVLvVd-~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~p~~~~~~~g~~vsVt~Lk~GD~ 340 (363)
|+.||+-. .||---.++|=..- ++-.+|||-.. ++. ...+..+.|.+-.. . --.|++||.
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~--~~~~~lV~f~~----~~~--~~v~~~~iI~~~~~----------~-~~~L~~GD~ 61 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV--SSGQFLVEFDD----GDT--QEVPISDIIALSDA----------M-RHSLQVGDK 61 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc--CCCEEEEEECC----CCE--EEeChHHeEEccCc----------c-cCcCCCCCE
Confidence 67788865 67776555443333 66778888833 442 44566666666422 2 567999999
Q ss_pred EEEEecCCCcccc
Q 017962 341 VLLRVQGAARHTG 353 (363)
Q Consensus 341 VL~~~~~~gRHfG 353 (363)
||..-+.....++
T Consensus 62 VLA~~~~~~~~Y~ 74 (124)
T PF15057_consen 62 VLAPWEPDDCRYG 74 (124)
T ss_pred EEEecCcCCCEEe
Confidence 9999887777776
No 105
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=56.33 E-value=84 Score=29.06 Aligned_cols=83 Identities=16% Similarity=0.200 Sum_probs=49.1
Q ss_pred EEecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhccc-CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017962 77 IEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ-GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 155 (363)
Q Consensus 77 ~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q-~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~ 155 (363)
.+..+.++.-.. ......+.++++-.-+..=.+|-+ ..+. ....-=+....+.++.....++|+.|++|.+++..++
T Consensus 30 ~~a~~~~~~l~~-~~~~~pdvvl~Dl~mP~~~G~e~~-~~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~ 107 (211)
T COG2197 30 GEASNGEEALDL-ARELKPDVVLLDLSMPGMDGLEAL-KQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASP 107 (211)
T ss_pred EEeCCHHHHHHH-hhhcCCCEEEEcCCCCCCChHHHH-HHHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCH
Confidence 345544432222 233457888886554443333322 2222 2222234455566777888999999999999999999
Q ss_pred HHHHHH
Q 017962 156 KAVLAL 161 (363)
Q Consensus 156 ~ei~~l 161 (363)
+++.+.
T Consensus 108 ~~l~~a 113 (211)
T COG2197 108 EELVEA 113 (211)
T ss_pred HHHHHH
Confidence 876544
No 106
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=55.35 E-value=33 Score=30.53 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=17.6
Q ss_pred CchhHHHHHHHhCccEEEEccc
Q 017962 20 ESKQVMTAAVERGWNTFVFLSE 41 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~ 41 (363)
...+.+..+.+.|+|++++..+
T Consensus 67 ~~~~~~~~~~~~gadgv~vh~~ 88 (210)
T TIGR01163 67 NPDRYIEDFAEAGADIITVHPE 88 (210)
T ss_pred CHHHHHHHHHHcCCCEEEEccC
Confidence 3456788888999999988764
No 107
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=55.21 E-value=1e+02 Score=29.78 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=56.7
Q ss_pred eeeeeEEEEEEEEEcCCcc-----eEEEeecCCCCCCceEEEeccCceEEE-EeeccccCCCCCCCCeeeec----CCce
Q 017962 174 LLSLMKATVTRVDVAGMGD-----RVCVDLCSLMRPGEGLLVGSFARGLFL-VHSECLESNYIASRPFRVNA----GPVH 243 (363)
Q Consensus 174 ~l~L~~atVt~V~~vGmGd-----RVCVDtcsll~~GEGmLVGs~s~glfL-VhsEt~e~~Yva~RPFRVNA----GaVH 243 (363)
.....+++|++.+++.-+. ++++-.-.-.. +|.-.-++..|=|+ |... .-.-.|||-+-- |-+.
T Consensus 42 ~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~~~~pGQ~v~v~~~----g~~~~R~YSias~p~~g~l~ 115 (289)
T cd06201 42 LPRTKALELVERKDYGAAVQAPTAILRFKPAKRKL--SGKGLPSFEAGDLLGILPP----GSDVPRFYSLASSSSDGFLE 115 (289)
T ss_pred CCCccceEEEeeeecCCCCCCccEEEEEeCCCccc--ccCCCCCcCccCEEEEecC----CCCCCceEecCCCCCCCeEE
Confidence 4467788899999886532 34443322000 01111122222222 2111 111236666533 3344
Q ss_pred eEEEe-cC-CceeeeeeccCCCeEEEE-cCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 244 AYVLV-PG-GKTCYLSELKSGKEVIVV-DQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 244 aYv~~-pg-gkT~YLSEL~sG~eVLvV-d~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
=.|.. |+ --|.||.+|+.||+|-+. ...|.-.. +-..+|++||=+
T Consensus 116 l~Vk~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~~------~~~~~~lvlIAg 163 (289)
T cd06201 116 ICVRKHPGGLCSGYLHGLKPGDTIKAFIRPNPSFRP------AKGAAPVILIGA 163 (289)
T ss_pred EEEEeCCCccchhhHhhCCCcCEEEEEeccCCCccC------CCCCCCEEEEec
Confidence 44543 44 457899999999999875 45665531 123578888844
No 108
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=55.11 E-value=1.3e+02 Score=28.37 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=63.7
Q ss_pred EEEEEe--CchhHHHHHHHhCccEEEEcccc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhh
Q 017962 14 RVWIWT--ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQEL 85 (363)
Q Consensus 14 ~vWvw~--~~K~~vt~AlEsG~~~~v~~~~~------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~ 85 (363)
.+|++- ++.+-+...|+.|++.+++.... .+.++..++=..+--|-..++... ..-...+++++
T Consensus 80 ~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~--------~~~~~~~~~~~ 151 (233)
T cd04723 80 GLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLL--------KPTDFIGPEEL 151 (233)
T ss_pred CEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeec--------cccCcCCHHHH
Confidence 367764 67899999999999999988642 222333332111111222333222 00012344443
Q ss_pred hhhccccCCCceEEEeCCCC----eeeehhhhhhccc-CCCceEE--EEcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 86 QQLQPADGQAENIVIDLPDW----QVIPAENIVASFQ-GSGKTVF--AISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 86 e~~~~~~~~~~~vvv~~~dW----~iIPlEnliA~~q-~~~~~l~--a~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
.+..... ++.+++..-|= +=..+ .++.++. .....++ ..++|.++++.++. .|++||++-+
T Consensus 152 ~~~~~~~--~~~li~~di~~~G~~~g~~~-~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~---~G~~~vivGs 219 (233)
T cd04723 152 LRRLAKW--PEELIVLDIDRVGSGQGPDL-ELLERLAARADIPVIAAGGVRSVEDLELLKK---LGASGALVAS 219 (233)
T ss_pred HHHHHHh--CCeEEEEEcCccccCCCcCH-HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH---cCCCEEEEeh
Confidence 3322222 44555533211 11112 2222221 1222333 45899999997765 5999999865
No 109
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=54.96 E-value=14 Score=35.91 Aligned_cols=163 Identities=14% Similarity=0.170 Sum_probs=96.8
Q ss_pred chhHHHHHHHhCccEEEEcccc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 017962 21 SKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 94 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~ 94 (363)
-.++...--+.|++++=+-.|. .+..+...+... -|+.-+|. |-++.++.+... ..
T Consensus 63 ~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~-~PvL~KDF---------------Iid~~QI~ea~~--~G 124 (247)
T PRK13957 63 PVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELK-IPVLRKDF---------------ILDEIQIREARA--FG 124 (247)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcC-CCEEeccc---------------cCCHHHHHHHHH--cC
Confidence 3566666678889876444321 222222222211 15444433 667777666554 35
Q ss_pred CceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHH-HHHHhhcccccccc
Q 017962 95 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL-ALKEYFDGRNEVSN 173 (363)
Q Consensus 95 ~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~-~l~~~~~~~~~~~~ 173 (363)
++-|++...--+---|++++...+.-+-..+.+|+|.+|++.++. .|++=|-+...|..... .+... ..
T Consensus 125 ADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~---~ga~iiGINnRdL~t~~vd~~~~-------~~ 194 (247)
T PRK13957 125 ASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALD---CGAEIIGINTRDLDTFQIHQNLV-------EE 194 (247)
T ss_pred CCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHh---CCCCEEEEeCCCCccceECHHHH-------HH
Confidence 677777655444334889999888888899999999999998654 69998888888765321 00000 00
Q ss_pred eeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEecc
Q 017962 174 LLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSF 213 (363)
Q Consensus 174 ~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGmLVGs~ 213 (363)
-.++.+..+..|..=|+..+--+.-.. +--.|+|||++
T Consensus 195 L~~~ip~~~~~IsESGI~t~~d~~~l~--~~~davLvG~~ 232 (247)
T PRK13957 195 VAAFLPPNIVKVGESGIESRSDLDKFR--KLVDAALIGTY 232 (247)
T ss_pred HHhhCCCCcEEEEcCCCCCHHHHHHHH--HhCCEEEECHH
Confidence 122233445666667777654333322 22578999875
No 110
>PRK14898 DNA-directed RNA polymerase subunit A''; Provisional
Probab=54.76 E-value=55 Score=37.13 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=46.2
Q ss_pred eeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEec---cceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCCCCCCce
Q 017962 253 TCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIES---RPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGEQEKA 329 (363)
Q Consensus 253 T~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~---RPLllIeAe~~~~~g~~~sviLQnAETIrLv~p~~~~~~~g~~ 329 (363)
+.|+ ++..|.+|+.+|.+|+.+...|-++ +.. .+|+.|+.+. |+.+.+. ++|==++..+|. =..
T Consensus 115 ~e~~-~~~~~~~V~s~d~~~k~~~~~v~~v-~r~~~~~~l~~I~t~~----Grei~vT---~~H~~~v~~~g~----~~~ 181 (858)
T PRK14898 115 HEVC-DLPIEIYALSLDQDEKVHWKRIISV-IRHKANGKLIKIKTES----GRTIRAT---PYHSFVTRKDNE----VIP 181 (858)
T ss_pred ceEE-ecCCCcEEEEECCCCcEEEEEeeeE-EeccCCCcEEEEEeCC----CcEEEEC---CCCeEEEeeCCe----EEE
Confidence 3344 5567999999999998888777776 222 2466666654 5443221 111112222310 122
Q ss_pred eeeeecCCCCEEEEE
Q 017962 330 IPVTSLKVGDEVLLR 344 (363)
Q Consensus 330 vsVt~Lk~GD~VL~~ 344 (363)
+..-+||+||.|.+-
T Consensus 182 ~~a~~l~~GD~i~~~ 196 (858)
T PRK14898 182 VEGSELKIGDWLPVV 196 (858)
T ss_pred eeHHhCCCCCEEeee
Confidence 345689999999775
No 111
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=54.56 E-value=1.1e+02 Score=28.17 Aligned_cols=134 Identities=16% Similarity=0.252 Sum_probs=62.7
Q ss_pred EEEeCchhHHHHHHHhCccEEEEcccchh----hhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhh--hhh-h
Q 017962 16 WIWTESKQVMTAAVERGWNTFVFLSENQQ----LAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE--LQQ-L 88 (363)
Q Consensus 16 Wvw~~~K~~vt~AlEsG~~~~v~~~~~~~----~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~--~e~-~ 88 (363)
|+-..+.+++..|..+|+|.++++-||.- +......+.-. +..-......+. ..++.|.+.+. .+. +
T Consensus 5 ~vp~~~~~~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~----~~~~~~~~~~~~--~~~VRvn~~~~~~~~~Dl 78 (221)
T PF03328_consen 5 FVPANSPKMLEKAAASGADFVILDLEDGVPPDEKDEAREDLAEA----LRSIRAARAAGS--EIIVRVNSLDSPHIERDL 78 (221)
T ss_dssp EEESTSHHHHHHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHH----HHHHHHHTTSSS--EEEEE-SSTTCHHHHHHH
T ss_pred EEeCCCHHHHHHHHhcCCCEEEEeCcccCCcccchhhHHHHHHH----HHhhcccccccc--cceecCCCCCcchhhhhh
Confidence 44457899999999999999999987621 11111111000 000001111222 34555665432 111 1
Q ss_pred ccccCCCceEEEeCCCCeeeehhhhhhccc---------CCCceEEEEcCCHHHHHHHHHHhhc-ccCeEEEecCCHH
Q 017962 89 QPADGQAENIVIDLPDWQVIPAENIVASFQ---------GSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDVK 156 (363)
Q Consensus 89 ~~~~~~~~~vvv~~~dW~iIPlEnliA~~q---------~~~~~l~a~v~~~~eA~~~~~~LE~-G~dGVvl~~~d~~ 156 (363)
.......+.|++-.-. +.=-++.+++.+. +.++.+++.+.|++--.-+-+++.. |+||+.+-+.|..
T Consensus 79 ~~l~~g~~gI~lP~ve-s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~Dls 155 (221)
T PF03328_consen 79 EALDAGADGIVLPKVE-SAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPADLS 155 (221)
T ss_dssp HHHHTTSSEEEETT---SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHH
T ss_pred hhcccCCCeeeccccC-cHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcHHHH
Confidence 1222235555551110 0001222333322 2245677777777666666666654 7777777766543
No 112
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=54.47 E-value=31 Score=34.33 Aligned_cols=115 Identities=19% Similarity=0.188 Sum_probs=64.1
Q ss_pred EeCchhHHHHHHHhCccEEEEcccc--h----hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017962 18 WTESKQVMTAAVERGWNTFVFLSEN--Q----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 91 (363)
Q Consensus 18 w~~~K~~vt~AlEsG~~~~v~~~~~--~----~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~ 91 (363)
+.+.++.+.+.+|.|++.+.++..+ . +..+.+.+- .| +..+. ...+.++++...+..
T Consensus 92 ~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~---~p------------~v~Vi-~G~v~t~~~A~~l~~- 154 (325)
T cd00381 92 REDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK---YP------------NVDVI-AGNVVTAEAARDLID- 154 (325)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH---CC------------CceEE-ECCCCCHHHHHHHHh-
Confidence 3466889999999999998876422 1 122222111 00 11111 135777777555543
Q ss_pred cCCCceEEEeC-----------CCCee---eehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 92 DGQAENIVIDL-----------PDWQV---IPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 92 ~~~~~~vvv~~-----------~dW~i---IPlEnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
..+|.+++.. .+|-. -.+.++...+...+..||+ .+.+..++..+ |+.|+|||.+-+-
T Consensus 155 -aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kA---la~GA~~VmiGt~ 228 (325)
T cd00381 155 -AGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKA---LAAGADAVMLGSL 228 (325)
T ss_pred -cCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHH---HHcCCCEEEecch
Confidence 3578887621 12221 1123333333333466887 67777776555 4689999998554
No 113
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=53.87 E-value=68 Score=27.69 Aligned_cols=108 Identities=14% Similarity=0.060 Sum_probs=55.2
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEEe
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 101 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~ 101 (363)
.+.+..+++.|++.+.++..+.........+..+..+ .+.-|.. . -+.+ +.+. +... +++.+-+.
T Consensus 15 ~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~-------~~~~~~~--l--~~~~--~~~~-a~~~-g~~~vh~~ 79 (196)
T cd00564 15 LEVVEAALKGGVTLVQLREKDLSARELLELARALREL-------CRKYGVP--L--IIND--RVDL-ALAV-GADGVHLG 79 (196)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHH-------HHHhCCe--E--EEeC--hHHH-HHHc-CCCEEecC
Confidence 6778999999999998875432222111111111110 0111211 1 1222 2222 2222 34555554
Q ss_pred CCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 102 LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 102 ~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
..+.. .. .+..+.+.+..+-..+.+.+|++ .+++.|+|.|++.
T Consensus 80 ~~~~~---~~-~~~~~~~~~~~~g~~~~t~~~~~---~~~~~g~d~i~~~ 122 (196)
T cd00564 80 QDDLP---VA-EARALLGPDLIIGVSTHSLEEAL---RAEELGADYVGFG 122 (196)
T ss_pred cccCC---HH-HHHHHcCCCCEEEeeCCCHHHHH---HHhhcCCCEEEEC
Confidence 44432 22 22333344556777788887765 4567899999885
No 114
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=53.61 E-value=14 Score=37.01 Aligned_cols=63 Identities=29% Similarity=0.419 Sum_probs=42.6
Q ss_pred CCCCCCCCeeeec------CCceeEEEe-----------cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccce
Q 017962 227 SNYIASRPFRVNA------GPVHAYVLV-----------PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 289 (363)
Q Consensus 227 ~~Yva~RPFRVNA------GaVHaYv~~-----------pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPL 289 (363)
.|...+|||-+-. |-+|=.|.. +|--|.||++|+.||+|-+.-..|..+.- .-..+|+
T Consensus 159 lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g~F~lp-----~~~~~pl 233 (382)
T cd06207 159 CPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKSSFKLP-----KDPKKPI 233 (382)
T ss_pred CcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECCcccCC-----CCCCCCE
Confidence 3778888888743 334444432 25567999999999999998877754211 1126899
Q ss_pred eEEEE
Q 017962 290 ILVEA 294 (363)
Q Consensus 290 llIeA 294 (363)
+||=+
T Consensus 234 ImIa~ 238 (382)
T cd06207 234 IMVGP 238 (382)
T ss_pred EEEcC
Confidence 99854
No 115
>PLN02765 pyruvate kinase
Probab=53.58 E-value=12 Score=40.12 Aligned_cols=205 Identities=15% Similarity=0.177 Sum_probs=116.7
Q ss_pred CchhHH-HHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCC-eeEEEEEecChhhhhhhccccCCCc
Q 017962 20 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDR-RVGSIIEVSTPQELQQLQPADGQAE 96 (363)
Q Consensus 20 ~~K~~v-t~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk-~v~~~~~v~~~e~~e~~~~~~~~~~ 96 (363)
.|++.+ .-|++-|+|.+-..- .+++.+.++.++ +++.|. .+..+.+|.+++.++.+..-...+|
T Consensus 207 kD~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~-------------l~~~g~~~~~IiaKIE~~~av~nl~eIi~~sD 273 (526)
T PLN02765 207 KDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREF-------------LSSLGLSQTQIFAKIENVEGLTHFDEILQEAD 273 (526)
T ss_pred hHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCCCcEEEEECCHHHHHHHHHHHHhcC
Confidence 467777 689999999544332 123344433333 222232 4567779999999999888888889
Q ss_pred eEEEeCCCCee-eehhhhhh-------cccCCCceEEE----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 017962 97 NIVIDLPDWQV-IPAENIVA-------SFQGSGKTVFA----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 154 (363)
Q Consensus 97 ~vvv~~~dW~i-IPlEnliA-------~~q~~~~~l~a----------~v~~~~eA~~~~~~LE~G~dGVvl~~~d---- 154 (363)
-++|...|--+ ||+|.+-. .....+.-+|+ ...+-.|+--...+.--|+|+|+|..+.
T Consensus 274 gIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~G~ 353 (526)
T PLN02765 274 GIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGL 353 (526)
T ss_pred EEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEEehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEecchhcCCC
Confidence 99996666553 77777533 22122222443 1234477888888999999999999543
Q ss_pred -H-HHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCC
Q 017962 155 -V-KAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIAS 232 (363)
Q Consensus 155 -~-~ei~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~ 232 (363)
| +.|+-+.+++.+.+ .. +... .......+ ...+ + +.+-| .+.+|=+ ++|
T Consensus 354 yPveaV~~m~~I~~~aE-~~--~~~~-~~~~~~~~-~~~~-------~-~~~~~-----------aia~sav----~~A- 404 (526)
T PLN02765 354 YPVETISTVGRICAEAE-KV--FNQD-LYFKKTVK-YVGE-------P-MSHLE-----------SIASSAV----RAA- 404 (526)
T ss_pred CHHHHHHHHHHHHHHHH-hh--cchh-hhhhhhhc-cccc-------C-CCHHH-----------HHHHHHH----HHH-
Confidence 3 55666677664321 10 1000 00000000 0000 0 00000 0001100 000
Q ss_pred CCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEc
Q 017962 233 RPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVD 269 (363)
Q Consensus 233 RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd 269 (363)
..+||-+.=.|+.. |..++++|-.|+--.|+++-
T Consensus 405 --~~l~a~aIvv~T~s-G~tAr~isk~RP~~pIla~t 438 (526)
T PLN02765 405 --IKVKASVIIVFTSS-GRAARLIAKYRPTMPVLSVV 438 (526)
T ss_pred --hhCCCCEEEEECCC-cHHHHHHHhhCCCCCEEEEe
Confidence 13688888888875 88889999999999999987
No 116
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=53.40 E-value=21 Score=27.78 Aligned_cols=40 Identities=30% Similarity=0.504 Sum_probs=29.6
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEecc
Q 017962 246 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESR 287 (363)
Q Consensus 246 v~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~R 287 (363)
=+++.|=+++=.+++.||.|.++|.+|+ ..-+||+..-+.
T Consensus 18 ~L~~~GV~~~~~~f~~gd~V~i~~~~g~--~ia~G~a~~ss~ 57 (74)
T PF01472_consen 18 SLFAPGVVEVDGDFRKGDEVAIVDEDGE--VIAVGRANMSSE 57 (74)
T ss_dssp EEEGGGEEEEETT--TTSEEEEEETTSS--EEEEEEESSTHH
T ss_pred CcchHHhEECCCCcCCCCEEEEEcCCCe--EEEEEEEecCHH
Confidence 3456778888888999999999999984 477888765443
No 117
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=53.22 E-value=16 Score=32.80 Aligned_cols=58 Identities=24% Similarity=0.321 Sum_probs=41.1
Q ss_pred CCCCeeeec-----CCceeEEEecCCceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 231 ASRPFRVNA-----GPVHAYVLVPGGKTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 231 a~RPFRVNA-----GaVHaYv~~pggkT~YLS-EL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
-.|||-+-. |-+.=+|...|+-|+||. .|+.||+|.+-...|+... .-..+|+++|=+
T Consensus 40 ~~r~ySi~s~~~~~~~l~l~vk~~G~~t~~l~~~l~~G~~v~i~gP~G~~~~------~~~~~~~vlia~ 103 (216)
T cd06198 40 EPHPFTISSAPDPDGRLRFTIKALGDYTRRLAERLKPGTRVTVEGPYGRFTF------DDRRARQIWIAG 103 (216)
T ss_pred CCCCcEEecCCCCCCeEEEEEEeCChHHHHHHHhCCCCCEEEEECCCCCCcc------cccCceEEEEcc
Confidence 346666632 445556667788999999 8999999999998887522 112578887754
No 118
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=52.68 E-value=49 Score=34.33 Aligned_cols=118 Identities=18% Similarity=0.136 Sum_probs=70.6
Q ss_pred CchhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEE
Q 017962 20 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 99 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vv 99 (363)
.+.+.+.+.+|.|+|.+.++..|-.....+..+..+..-+ + +..+. ...|.++++...+... .++.+.
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~-------~--~~~vi-~G~v~t~~~a~~l~~a--Gad~i~ 291 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTY-------P--DLDII-AGNVATAEQAKALIDA--GADGLR 291 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhC-------C--CCCEE-EEeCCCHHHHHHHHHh--CCCEEE
Confidence 4578888999999999999874422122222222222100 0 12222 2478888886665542 567765
Q ss_pred Ee-C----------CCCeee---ehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 100 ID-L----------PDWQVI---PAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 100 v~-~----------~dW~iI---PlEnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
+. + .+|-+- .+.++...++..+..|+| .+++..|+..| |+.|+|.|++-+
T Consensus 292 vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kA---la~GA~~V~~G~ 357 (450)
T TIGR01302 292 VGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKA---LAAGADAVMLGS 357 (450)
T ss_pred ECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHH---HHcCCCEEEECc
Confidence 43 1 134333 334444444555678999 89999998665 566999999864
No 119
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=52.62 E-value=40 Score=34.12 Aligned_cols=114 Identities=15% Similarity=0.258 Sum_probs=65.5
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH----------HHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK----------AVLALKE 163 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~----------ei~~l~~ 163 (363)
+.+.+++.+.+ |-+ +.+++..+.+++..|.|.++|+.+ ++.|+|+|++.-.... -+.++.+
T Consensus 82 ~v~~V~~~~G~----P~~--~~~lk~~Gi~v~~~v~s~~~A~~a---~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~ 152 (320)
T cd04743 82 KPTFALIAGGR----PDQ--ARALEAIGISTYLHVPSPGLLKQF---LENGARKFIFEGRECGGHVGPRSSFVLWESAID 152 (320)
T ss_pred CCcEEEEcCCC----hHH--HHHHHHCCCEEEEEeCCHHHHHHH---HHcCCCEEEEecCcCcCCCCCCCchhhHHHHHH
Confidence 45555554433 322 466777789999999999999774 5789999998755321 1111111
Q ss_pred hhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCC-----C--ceEEEeccCceEEEEeeccc
Q 017962 164 YFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRP-----G--EGLLVGSFARGLFLVHSECL 225 (363)
Q Consensus 164 ~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~-----G--EGmLVGs~s~glfLVhsEt~ 225 (363)
.+.. ... +.....|-=|-.=|++|-=-+-..-.|.- | +|..+|+ -||...||.
T Consensus 153 ~l~~---~~~--~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGT----rFl~t~Es~ 212 (320)
T cd04743 153 ALLA---ANG--PDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGT----AYLFTEEAV 212 (320)
T ss_pred HHHH---hhc--ccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEcc----HHhcchhhc
Confidence 1110 000 00000121223337887654444445544 3 8999996 488888874
No 120
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=52.58 E-value=30 Score=35.35 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=34.3
Q ss_pred CCCceEEEeCC-----------CCeeeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 93 GQAENIVIDLP-----------DWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 93 ~~~~~vvv~~~-----------dW~iIPlEnliA~~q~~~~~l~a-~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
..++.++++++ +|.. +-.++. ..+..|++ .+.+.++|+.++ +.|+|+|++-
T Consensus 153 aGvd~I~vhgrt~~~~h~~~~~~~~~--i~~~ik---~~~ipVIaG~V~t~e~A~~l~---~aGAD~V~VG 215 (368)
T PRK08649 153 AGVDLFVIQGTVVSAEHVSKEGEPLN--LKEFIY---ELDVPVIVGGCVTYTTALHLM---RTGAAGVLVG 215 (368)
T ss_pred CCCCEEEEeccchhhhccCCcCCHHH--HHHHHH---HCCCCEEEeCCCCHHHHHHHH---HcCCCEEEEC
Confidence 35899999764 4533 333444 34567887 777777776665 5899999875
No 121
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=52.45 E-value=1.7e+02 Score=26.03 Aligned_cols=82 Identities=20% Similarity=0.135 Sum_probs=40.8
Q ss_pred CCCeeEEEEEecChhhhhhhccccCCCceEEEeCCCCe--------eeehhhhhhcccCCC-ceEEEEcCCHHHHHHHHH
Q 017962 69 GDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQ--------VIPAENIVASFQGSG-KTVFAISKTPSEAQIFLE 139 (363)
Q Consensus 69 ~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~--------iIPlEnliA~~q~~~-~~l~a~v~~~~eA~~~~~ 139 (363)
.+..+++. +.+.++..++. ...+|++.+..-..+ ...++.+-.-.+..+ ..|++.-. .. .+.+-.
T Consensus 103 ~~~~~g~~--~~t~~e~~~a~--~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GG-I~-~~~i~~ 176 (212)
T PRK00043 103 PDAIIGLS--THTLEEAAAAL--AAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGG-IT-PENAPE 176 (212)
T ss_pred CCCEEEEe--CCCHHHHHHHh--HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECC-cC-HHHHHH
Confidence 35555543 44655543333 336899986321111 111233222111112 45555422 21 345668
Q ss_pred HhhcccCeEEE-----ecCCHH
Q 017962 140 ALEQGLGGIVL-----KVEDVK 156 (363)
Q Consensus 140 ~LE~G~dGVvl-----~~~d~~ 156 (363)
+++.|+|||++ ..+|+.
T Consensus 177 ~~~~Ga~gv~~gs~i~~~~d~~ 198 (212)
T PRK00043 177 VLEAGADGVAVVSAITGAEDPE 198 (212)
T ss_pred HHHcCCCEEEEeHHhhcCCCHH
Confidence 88999999997 455654
No 122
>PF05203 Hom_end_hint: Hom_end-associated Hint; InterPro: IPR007868 Homing endonucleases are encoded by mobile DNA elements that are found inserted within host genes in all domains of life. The crystal structure of the homing nuclease PI-Sce [] revealed two domains: an endonucleolytic centre resembling the C-terminal domain of Drosophila melanogaster Hedgehog protein, and a second domain containing the protein-splicing active site. This domain corresponds to the protein-splicing domain.; GO: 0030908 protein splicing; PDB: 1LWT_A 1UM2_B 1JVA_B 1GPP_A 1VDE_A 1EF0_B 1DFA_A 1LWS_A.
Probab=52.30 E-value=15 Score=34.90 Aligned_cols=47 Identities=28% Similarity=0.419 Sum_probs=28.8
Q ss_pred EEEecCCceeeeeeccCCCeEEEEcCCCCeeEEe-eeeEEEeccceeEEEEEe
Q 017962 245 YVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAV-VGRVKIESRPLILVEAKT 296 (363)
Q Consensus 245 Yv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~-VGRvKIE~RPLllIeAe~ 296 (363)
=|+|.+|..+-..+++.||+||. .||+.|+++ +-| =++.|.-|.-..
T Consensus 7 ~vlmaDG~~k~ie~i~~Gd~vmg--~dg~~r~V~~~~~---g~~~my~i~~~~ 54 (215)
T PF05203_consen 7 RVLMADGSIKPIEDIKIGDQVMG--PDGRPRRVTNVPR---GREEMYRITQKT 54 (215)
T ss_dssp EEEBTTS-EEEGGG--TT-EEEB--TTSSEEEEEE--E---EEEEEEEEEE-S
T ss_pred EEEecCCCeeEEeecccCCEEEC--CCCCcEEEEEecc---cceeEEEEEEcc
Confidence 48999999999999999999875 777776542 322 223466666653
No 123
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=52.27 E-value=32 Score=33.64 Aligned_cols=115 Identities=9% Similarity=0.095 Sum_probs=62.2
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCceEEE
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~e~~e~~~~~~~~~~~vvv 100 (363)
++.+..|-++|+|++|+++=-.+...++... ....|-....++.- ++++.++.++......=|.+-
T Consensus 105 e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~-------------~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs 171 (259)
T PF00290_consen 105 ERFFKEAKEAGVDGLIIPDLPPEESEELREA-------------AKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVS 171 (259)
T ss_dssp HHHHHHHHHHTEEEEEETTSBGGGHHHHHHH-------------HHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEES
T ss_pred HHHHHHHHHcCCCEEEEcCCChHHHHHHHHH-------------HHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeec
Confidence 5688999999999999986222333333222 11223333333344 456666666665433223221
Q ss_pred -eC-CCC-ee--eehhhhhhcccCCCc-eEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 101 -DL-PDW-QV--IPAENIVASFQGSGK-TVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 101 -~~-~dW-~i--IPlEnliA~~q~~~~-~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
.+ ++= +- -.+++++..+..... -|+. .++|.++|+.+. .|+|||++-+.
T Consensus 172 ~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~----~~aDGvIVGSa 228 (259)
T PF00290_consen 172 RMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA----AGADGVIVGSA 228 (259)
T ss_dssp SSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH----TTSSEEEESHH
T ss_pred cCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH----ccCCEEEECHH
Confidence 11 111 11 246777777654432 3333 478888888765 89999999764
No 124
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=52.16 E-value=23 Score=33.23 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=39.0
Q ss_pred CCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 240 GPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 240 GaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
|-++=+|..-|.-|+||..++.||+|.+-...|+.-.. -..+.+|+++|=+
T Consensus 56 ~~l~~~Ik~~G~~S~~L~~l~~G~~v~i~gP~G~~f~~----~~~~~~~iv~IA~ 106 (253)
T cd06221 56 GPLELTIRRVGRVTEALHELKPGDTVGLRGPFGNGFPV----EEMKGKDLLLVAG 106 (253)
T ss_pred CeEEEEEEeCChhhHHHHcCCCCCEEEEECCcCCCccc----ccccCCeEEEEcc
Confidence 45677787788899999999999999999998874321 1124689888865
No 125
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=52.05 E-value=12 Score=40.35 Aligned_cols=32 Identities=13% Similarity=0.411 Sum_probs=26.4
Q ss_pred eeccCCCeEEEEcCCCCeeEEeeeeEEEecccee
Q 017962 257 SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLI 290 (363)
Q Consensus 257 SEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLl 290 (363)
.++++||||+|||.+|+. .-|||+++--+-|+
T Consensus 495 ~~IR~~dEV~vv~~~~~l--lavGra~lsg~em~ 526 (540)
T TIGR00432 495 NNIRANDEVLIVNADDEL--LATGKALLCAEEMM 526 (540)
T ss_pred CCCCCCCeEEEEcCCCcE--EEEEehhcCHHHHH
Confidence 479999999999999865 78999987655553
No 126
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=51.80 E-value=58 Score=32.18 Aligned_cols=109 Identities=9% Similarity=0.088 Sum_probs=58.9
Q ss_pred chhHHHHHHHhCccEEEEcccch-hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEE
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 99 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~-~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vv 99 (363)
.++.+..++|.|++.|.+..... +.++.+ +..|.. ++..+.+.++...+.. ..+|.++
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~p~~~i~~l-----------------k~~g~~--v~~~v~s~~~a~~a~~--~GaD~Iv 134 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGNPGKYIPRL-----------------KENGVK--VIPVVASVALAKRMEK--AGADAVI 134 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcHHHHHHH-----------------HHcCCE--EEEEcCCHHHHHHHHH--cCCCEEE
Confidence 46777888899998877643211 122221 222332 3446788776444433 2588898
Q ss_pred EeCCCCe----eeehhhhhhcccCC-CceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 100 IDLPDWQ----VIPAENIVASFQGS-GKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 100 v~~~dW~----iIPlEnliA~~q~~-~~~l~a~--v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
+.+.+.. -.|.-.++.++... +..|++. +.|.+++. .+|+.|+|||++-+.
T Consensus 135 v~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~---~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 135 AEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMA---AAFALGAEAVQMGTR 192 (307)
T ss_pred EECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHH---HHHHcCCCEeecchH
Confidence 8653111 12333333333211 3345543 55655554 455579999998763
No 127
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=51.76 E-value=1.7e+02 Score=26.56 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=29.3
Q ss_pred CCceeee-eeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEE
Q 017962 250 GGKTCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 295 (363)
Q Consensus 250 ggkT~YL-SEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe 295 (363)
|.-|+|| ..|+.||.|.+-...|.... .-..+|+++|=+-
T Consensus 69 G~~s~~l~~~l~~G~~v~i~gP~G~~~~------~~~~~~~lliagG 109 (227)
T cd06213 69 GAFSGWLFGADRTGERLTVRGPFGDFWL------RPGDAPILCIAGG 109 (227)
T ss_pred CcchHHHHhcCCCCCEEEEeCCCcceEe------CCCCCcEEEEecc
Confidence 4468999 66999999999999997532 1134788887653
No 128
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=51.36 E-value=91 Score=25.00 Aligned_cols=67 Identities=18% Similarity=0.285 Sum_probs=44.6
Q ss_pred EEEEecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcc----cCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017962 75 SIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASF----QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 150 (363)
Q Consensus 75 ~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~----q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl 150 (363)
.+...++++.++++-. .+++.+++...|. -+|+.+.+ .....++++.+.+.+.++.+-. .|+|-|+.
T Consensus 45 i~gd~~~~~~l~~a~i--~~a~~vv~~~~~d----~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~---~g~d~vi~ 115 (116)
T PF02254_consen 45 IYGDATDPEVLERAGI--EKADAVVILTDDD----EENLLIALLARELNPDIRIIARVNDPENAELLRQ---AGADHVIS 115 (116)
T ss_dssp EES-TTSHHHHHHTTG--GCESEEEEESSSH----HHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH---TT-SEEEE
T ss_pred ccccchhhhHHhhcCc--cccCEEEEccCCH----HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHH---CCcCEEEC
Confidence 4445667777666643 3577888876655 56654422 1335799999999999888744 79998875
No 129
>PRK15452 putative protease; Provisional
Probab=51.33 E-value=1.3e+02 Score=31.57 Aligned_cols=136 Identities=10% Similarity=0.094 Sum_probs=72.1
Q ss_pred EEEEEeCchhHHHHHHHhCccEEEEcccchh---hhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-Chhhhhhhc
Q 017962 14 RVWIWTESKQVMTAAVERGWNTFVFLSENQQ---LAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQ 89 (363)
Q Consensus 14 ~vWvw~~~K~~vt~AlEsG~~~~v~~~~~~~---~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~ 89 (363)
++-+...+.+-+.+|++.|+|+|.+.-+.-. .+..++. .-+ .+.-+.....|+++.+.+... ..++++.+.
T Consensus 5 eLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~-edl----~eav~~ah~~g~kvyvt~n~i~~e~el~~~~ 79 (443)
T PRK15452 5 ELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNH-ENL----ALGINEAHALGKKFYVVVNIAPHNAKLKTFI 79 (443)
T ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCH-HHH----HHHHHHHHHcCCEEEEEecCcCCHHHHHHHH
Confidence 4555778899999999999999999542100 0000000 000 000122345566654433332 334444433
Q ss_pred cccC-----CCceEEEeCCCCeeeehhhhhhcccCCCceEE----EEcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHH
Q 017962 90 PADG-----QAENIVIDLPDWQVIPAENIVASFQGSGKTVF----AISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVL 159 (363)
Q Consensus 90 ~~~~-----~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~----a~v~~~~eA~~~~~~LE~G~dGVvl~~~-d~~ei~ 159 (363)
..+. ..|-+|+ .||-+|-+ +.+. ..+..|. +.+.|...++.+ .+.|+++|+|..+ +.+||+
T Consensus 80 ~~l~~l~~~gvDgvIV--~d~G~l~~---~ke~-~p~l~ih~stqlni~N~~a~~f~---~~lG~~rvvLSrELsl~EI~ 150 (443)
T PRK15452 80 RDLEPVIAMKPDALIM--SDPGLIMM---VREH-FPEMPIHLSVQANAVNWATVKFW---QQMGLTRVILSRELSLEEIE 150 (443)
T ss_pred HHHHHHHhCCCCEEEE--cCHHHHHH---HHHh-CCCCeEEEEecccCCCHHHHHHH---HHCCCcEEEECCcCCHHHHH
Confidence 3221 3576776 35655522 2211 0122333 335666666655 4579999999998 468887
Q ss_pred HHHH
Q 017962 160 ALKE 163 (363)
Q Consensus 160 ~l~~ 163 (363)
++++
T Consensus 151 ~i~~ 154 (443)
T PRK15452 151 EIRQ 154 (443)
T ss_pred HHHh
Confidence 6653
No 130
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=51.14 E-value=20 Score=32.94 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=26.1
Q ss_pred ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 017962 252 KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVK 283 (363)
Q Consensus 252 kT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvK 283 (363)
.-++|.+|+.||+|.+.+.+|+.++=-|=+++
T Consensus 102 ~F~~L~~L~~GD~I~v~~~~g~~~~Y~V~~~~ 133 (174)
T TIGR03784 102 HFAFLQELRPGDVIRLQTPDGQWQSYQVTATR 133 (174)
T ss_pred cCCChhhCCCCCEEEEEECCCeEEEEEEeEEE
Confidence 36789999999999999999988755555554
No 131
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=51.13 E-value=1.1e+02 Score=27.04 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=41.1
Q ss_pred CCceEEEeCC--CCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 94 QAENIVIDLP--DWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 94 ~~~~vvv~~~--dW~iIPlEnliA~~q~--~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..+.++++.. |+....--+++..++. ....++..... .+......+++.|++|.+.++.++.++.+.
T Consensus 49 ~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~-~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~a 119 (216)
T PRK10840 49 DAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMN-NNPAILSAVLDLDIEGIVLKQGAPTDLPKA 119 (216)
T ss_pred CCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEEEec-CCHHHHHHHHHCCCeEEEECCCCHHHHHHH
Confidence 4677777532 2210112234444432 34566665544 455667788999999999999999887543
No 132
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=50.91 E-value=1.3e+02 Score=33.65 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=69.9
Q ss_pred chhHHHHHHHhCccEEEEccc---c---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 017962 21 SKQVMTAAVERGWNTFVFLSE---N---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 94 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~---~---~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~ 94 (363)
++-.+-.|-..|+|+++.--. + .++.+...++ |-. ++++|-+.++++.+... .
T Consensus 122 d~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~l-----------------Gme--~LvEvh~~~el~~a~~~--g 180 (695)
T PRK13802 122 TDYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHEL-----------------GMT--VLVETHTREEIERAIAA--G 180 (695)
T ss_pred CHHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHc-----------------CCe--EEEEeCCHHHHHHHHhC--C
Confidence 456677888999999876431 0 1222222222 322 67899999998886553 4
Q ss_pred CceEEEeCCCCe--eeeh---hhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEe-----cCCHHH-HHHH
Q 017962 95 AENIVIDLPDWQ--VIPA---ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLK-----VEDVKA-VLAL 161 (363)
Q Consensus 95 ~~~vvv~~~dW~--iIPl---EnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~-----~~d~~e-i~~l 161 (363)
++.+=|+-+|-+ -+-+ ++|...+.. +.-+++ .+++++|++.+. +.|+||||+- .+||.. +++|
T Consensus 181 a~iiGINnRdL~tf~vd~~~t~~L~~~ip~-~~~~VsESGI~~~~d~~~l~---~~G~davLIGeslm~~~dp~~~~~~l 256 (695)
T PRK13802 181 AKVIGINARNLKDLKVDVNKYNELAADLPD-DVIKVAESGVFGAVEVEDYA---RAGADAVLVGEGVATADDHELAVERL 256 (695)
T ss_pred CCEEEEeCCCCccceeCHHHHHHHHhhCCC-CcEEEEcCCCCCHHHHHHHH---HCCCCEEEECHHhhCCCCHHHHHHHH
Confidence 677778887655 2333 333333321 222333 356778887665 6999999974 466643 4444
Q ss_pred H
Q 017962 162 K 162 (363)
Q Consensus 162 ~ 162 (363)
.
T Consensus 257 ~ 257 (695)
T PRK13802 257 V 257 (695)
T ss_pred H
Confidence 3
No 133
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=50.43 E-value=60 Score=30.82 Aligned_cols=131 Identities=15% Similarity=0.160 Sum_probs=66.0
Q ss_pred HHHHHHHhCccEEEEccc-----chhhhhhccceeeee-----eeeecCCccccCCCCeeEEEEEecChhhhhhhccc--
Q 017962 24 VMTAAVERGWNTFVFLSE-----NQQLAIDWSTIALLD-----PLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA-- 91 (363)
Q Consensus 24 ~vt~AlEsG~~~~v~~~~-----~~~~~~~~~~i~~i~-----~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~-- 91 (363)
.+..|++.|++.+-+... +.+..+....+..+. |+++. +..+|..++. .+++.+.+++..
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~----~~~~Gvh~~~----~~~~~~~~~~~~a~ 166 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAM----MYPRGPHIDD----RDPELVAHAARLGA 166 (258)
T ss_pred eHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEE----EeccCccccc----ccHHHHHHHHHHHH
Confidence 478899999997665432 123333333322211 22220 0122322221 234444443222
Q ss_pred cCCCceEEEeCCCCeeeehhhhhhcccCCCceEEE--EcC--CHHHHHH-HHHHhhcccCeEEE-----ecCCH-HHHHH
Q 017962 92 DGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA--ISK--TPSEAQI-FLEALEQGLGGIVL-----KVEDV-KAVLA 160 (363)
Q Consensus 92 ~~~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a--~v~--~~~eA~~-~~~~LE~G~dGVvl-----~~~d~-~ei~~ 160 (363)
...+||+-..+ . ..+|.+-...+..+..+++ ..+ |.+++.. +-++++.|++|+.+ ..+|| ..+++
T Consensus 167 ~~GADyikt~~---~-~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~ 242 (258)
T TIGR01949 167 ELGADIVKTPY---T-GDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKA 242 (258)
T ss_pred HHCCCEEeccC---C-CCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHH
Confidence 23588888753 3 2444443332223344444 455 5666644 44788999999975 45565 45555
Q ss_pred HHHhhc
Q 017962 161 LKEYFD 166 (363)
Q Consensus 161 l~~~~~ 166 (363)
++.++.
T Consensus 243 l~~~i~ 248 (258)
T TIGR01949 243 VCKIVH 248 (258)
T ss_pred HHHHHh
Confidence 666664
No 134
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=50.20 E-value=1.5e+02 Score=28.90 Aligned_cols=94 Identities=12% Similarity=0.124 Sum_probs=52.9
Q ss_pred ceeeeeEEEEEEEEEcCCcc-eEEEeec-----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCee-eec----CC
Q 017962 173 NLLSLMKATVTRVDVAGMGD-RVCVDLC-----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFR-VNA----GP 241 (363)
Q Consensus 173 ~~l~L~~atVt~V~~vGmGd-RVCVDtc-----sll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFR-VNA----Ga 241 (363)
..-.+..++|++++++.-.= ..++..- --+.||+=+.+. +..+....++.-.|||. ++. |-
T Consensus 29 ~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~--------~~~~~~~~~~~~~R~YS~~s~~~~~~~ 100 (300)
T PTZ00319 29 DPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFR--------CDCTTPGKPETVQHSYTPISSDDEKGY 100 (300)
T ss_pred CcCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEE--------EEeCCCCccceEEeeeccCCCcccCCE
Confidence 34455678999999886432 3455321 124455433322 22211111223345554 333 22
Q ss_pred ceeEEEe---------c--CCceeeeeeccCCCeEEEEcCCCCe
Q 017962 242 VHAYVLV---------P--GGKTCYLSELKSGKEVIVVDQKGRQ 274 (363)
Q Consensus 242 VHaYv~~---------p--ggkT~YLSEL~sG~eVLvVd~~G~~ 274 (363)
..=+|.. | |.-|+||..|+.||+|.+-...|+.
T Consensus 101 i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f 144 (300)
T PTZ00319 101 VDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGKF 144 (300)
T ss_pred EEEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEccceee
Confidence 3334443 2 7788999999999999998888864
No 135
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=49.98 E-value=90 Score=29.54 Aligned_cols=122 Identities=24% Similarity=0.210 Sum_probs=80.7
Q ss_pred chhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEE
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 100 (363)
-.+++.+.++.|+..+=++-.+.+-.+.+..+..- .+ +-.+| -..|.++++.+.+... .++++|-
T Consensus 22 a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~----------~~--~~~vG-AGTVl~~~~a~~a~~a--GA~Fivs 86 (204)
T TIGR01182 22 ALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKE----------VP--DALIG-AGTVLNPEQLRQAVDA--GAQFIVS 86 (204)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHH----------CC--CCEEE-EEeCCCHHHHHHHHHc--CCCEEEC
Confidence 46788999999999887775443222222222110 01 12222 3579999997776643 5677754
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC----HHHHHHHHHhhc
Q 017962 101 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED----VKAVLALKEYFD 166 (363)
Q Consensus 101 ~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d----~~ei~~l~~~~~ 166 (363)
-..| .+++...+..+.-.+..+.|+.|+.. +++.|+|-|=+-|-+ ++-++.|+..+.
T Consensus 87 P~~~------~~v~~~~~~~~i~~iPG~~TptEi~~---A~~~Ga~~vKlFPA~~~GG~~yikal~~plp 147 (204)
T TIGR01182 87 PGLT------PELAKHAQDHGIPIIPGVATPSEIML---ALELGITALKLFPAEVSGGVKMLKALAGPFP 147 (204)
T ss_pred CCCC------HHHHHHHHHcCCcEECCCCCHHHHHH---HHHCCCCEEEECCchhcCCHHHHHHHhccCC
Confidence 3333 36777777777889999999999865 578999999888876 566777777663
No 136
>TIGR01445 intein_Nterm intein N-terminal splicing region. This model is based on interated search results, starting with a curated collection of intein N-terminal splicing regions from InBase, the New England Biolabs Intein Database, as presented on its web site. It is designed to recognize inteins but not the related region of the sonic hedgehog protein.
Probab=49.96 E-value=47 Score=25.38 Aligned_cols=61 Identities=21% Similarity=0.360 Sum_probs=37.1
Q ss_pred eEEEecCCceeeeeeccC---------CCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceE
Q 017962 244 AYVLVPGGKTCYLSELKS---------GKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETV 314 (363)
Q Consensus 244 aYv~~pggkT~YLSEL~s---------G~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sviLQnAETI 314 (363)
+.|++++|++..+.||-. |.+|+.+|.++. +..+|.....-+. .+..+.+-+.|-.+|
T Consensus 5 t~V~~~~G~~~~i~el~~~~~~~~~~~~~~v~s~~~~~~----------~~~~~~~~~~~~~---~~~~~~i~t~~g~~i 71 (81)
T TIGR01445 5 TKVLTEDGETVKIGELVEKEKDEKEPIKVKVLSLDGGKI----------VKARPVVVWKRRA---EGKLIRIKTENGREI 71 (81)
T ss_pred CEEEeCCCCEEEHHHHHHHHhccCCccceEEEeecCCcE----------EEeeceEEEEecC---CCcEEEEEeCCCCEE
Confidence 567778888889998877 678888875431 2234443333333 345566666666666
Q ss_pred EEe
Q 017962 315 ALV 317 (363)
Q Consensus 315 rLv 317 (363)
++.
T Consensus 72 ~~T 74 (81)
T TIGR01445 72 KAT 74 (81)
T ss_pred EEC
Confidence 643
No 137
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=49.93 E-value=1.1e+02 Score=28.68 Aligned_cols=112 Identities=16% Similarity=0.200 Sum_probs=64.3
Q ss_pred chhHHHHHHHhCccEEEEcccch---------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQ---------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 91 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~---------~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~ 91 (363)
--+++....+.|++.+.+-+-++ +..+++.+-.. -|+.+.+| |.+.++.+.+..
T Consensus 32 ~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~-ipv~~~GG---------------i~s~~~~~~~l~- 94 (253)
T PRK02083 32 PVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVF-IPLTVGGG---------------IRSVEDARRLLR- 94 (253)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCC-CCEEeeCC---------------CCCHHHHHHHHH-
Confidence 35777888899999877654222 22333322211 13444444 788888888765
Q ss_pred cCCCceEEEeCCCCeee-ehhhhhhcccCCCceEEEEcC---------------------CHHHHHHHHHHhhcccCeEE
Q 017962 92 DGQAENIVIDLPDWQVI-PAENIVASFQGSGKTVFAISK---------------------TPSEAQIFLEALEQGLGGIV 149 (363)
Q Consensus 92 ~~~~~~vvv~~~dW~iI-PlEnliA~~q~~~~~l~a~v~---------------------~~~eA~~~~~~LE~G~dGVv 149 (363)
. .++.+++...-++-. =++++.+.+.. .+++..+. +.+....+.+..+.|++.++
T Consensus 95 ~-Ga~~Viigt~~l~~p~~~~ei~~~~g~--~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii 171 (253)
T PRK02083 95 A-GADKVSINSAAVANPELISEAADRFGS--QCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEIL 171 (253)
T ss_pred c-CCCEEEEChhHhhCcHHHHHHHHHcCC--CCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEE
Confidence 2 478888865332211 13566666522 24444332 22334555667789999999
Q ss_pred Eec
Q 017962 150 LKV 152 (363)
Q Consensus 150 l~~ 152 (363)
+++
T Consensus 172 ~~~ 174 (253)
T PRK02083 172 LTS 174 (253)
T ss_pred EcC
Confidence 966
No 138
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=49.58 E-value=86 Score=27.88 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=47.0
Q ss_pred CeeEEEEEecChhhhh-hhccccCCCceEEEeCCCCeeeehhhhhhcccCCCceEEE---EcCCHHHHHHHHHHhhcccC
Q 017962 71 RRVGSIIEVSTPQELQ-QLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA---ISKTPSEAQIFLEALEQGLG 146 (363)
Q Consensus 71 k~v~~~~~v~~~e~~e-~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a---~v~~~~eA~~~~~~LE~G~d 146 (363)
..+..-..+.++.... ..+. ...++.+++...... -.++.++..++..+-+++. ...|++|+. .++..|+|
T Consensus 54 ~~i~~~~~v~~~~~~~~~~~~-~aGad~i~~h~~~~~-~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~---~~~~~~~d 128 (202)
T cd04726 54 KIIVADLKTADAGALEAEMAF-KAGADIVTVLGAAPL-STIKKAVKAAKKYGKEVQVDLIGVEDPEKRA---KLLKLGVD 128 (202)
T ss_pred CEEEEEEEeccccHHHHHHHH-hcCCCEEEEEeeCCH-HHHHHHHHHHHHcCCeEEEEEeCCCCHHHHH---HHHHCCCC
Confidence 3344444555553211 1122 235788888776643 3467788887766667664 455666665 47788999
Q ss_pred eEEEec
Q 017962 147 GIVLKV 152 (363)
Q Consensus 147 GVvl~~ 152 (363)
-|++.+
T Consensus 129 ~v~~~~ 134 (202)
T cd04726 129 IVILHR 134 (202)
T ss_pred EEEEcC
Confidence 999853
No 139
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=49.36 E-value=18 Score=34.66 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=30.1
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 250 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 250 ggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
|--|+||++|+.||+|.+-...|+.-... .-..+|+++|=+
T Consensus 103 G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIag 143 (286)
T cd06208 103 GVCSNYLCDLKPGDDVQITGPVGKTMLLP----EDPNATLIMIAT 143 (286)
T ss_pred cchHHHHhhCCCCCEEEEEeecCCcccCC----CCCCCCEEEEec
Confidence 66799999999999999988888642211 012578888854
No 140
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=48.64 E-value=1.4e+02 Score=26.98 Aligned_cols=97 Identities=22% Similarity=0.337 Sum_probs=56.2
Q ss_pred EEEEEEEEEcCCcc-eEEEeecC----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeec-----CCceeEEEe
Q 017962 179 KATVTRVDVAGMGD-RVCVDLCS----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNA-----GPVHAYVLV 248 (363)
Q Consensus 179 ~atVt~V~~vGmGd-RVCVDtcs----ll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVNA-----GaVHaYv~~ 248 (363)
+++|++++.+.-+- ++++.... -..||+=+.+- ... + -..|||-+-. |-+.=++..
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~---------~~~----~-~~~r~ySi~s~~~~~~~l~l~vk~ 67 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDIT---------VPG----T-EETRSFSMANTPADPGRLEFIIKK 67 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEE---------cCC----C-CcccccccCCCCCCCCEEEEEEEE
Confidence 57888888875543 23444322 24455544332 111 1 1356666532 334444544
Q ss_pred -cCCc-eeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 249 -PGGK-TCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 249 -pggk-T~YLSE-L~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
|+|. |.||.+ |+.||.|.+-...|+...- +.+.+|+++|=+
T Consensus 68 ~~~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~-----~~~~~~~l~iag 111 (232)
T cd06212 68 YPGGLFSSFLDDGLAVGDPVTVTGPYGTCTLR-----ESRDRPIVLIGG 111 (232)
T ss_pred CCCCchhhHHhhcCCCCCEEEEEcCcccceec-----CCCCCcEEEEec
Confidence 5554 899986 9999999999888866421 124578887754
No 141
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=48.21 E-value=29 Score=32.44 Aligned_cols=86 Identities=17% Similarity=0.028 Sum_probs=50.7
Q ss_pred EEEEEecChhhhhhhccccCC--CceEEEeCCCCeeeehhhhhhcccCC-CceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017962 74 GSIIEVSTPQELQQLQPADGQ--AENIVIDLPDWQVIPAENIVASFQGS-GKTVFAISKTPSEAQIFLEALEQGLGGIVL 150 (363)
Q Consensus 74 ~~~~~v~~~e~~e~~~~~~~~--~~~vvv~~~dW~iIPlEnliA~~q~~-~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl 150 (363)
...+...++++...++..+-+ ...+=+..+++ .....|+++... +..++-.+.+.-....+-.+++.|+|+++.
T Consensus 13 ~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~---~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivs 89 (206)
T PRK09140 13 IAILRGITPDEALAHVGALIEAGFRAIEIPLNSP---DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVT 89 (206)
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEEC
Confidence 344556677777776665533 45555544444 344455555332 223554444444444445677899999999
Q ss_pred ecCCHHHHHHHH
Q 017962 151 KVEDVKAVLALK 162 (363)
Q Consensus 151 ~~~d~~ei~~l~ 162 (363)
...|++-++..+
T Consensus 90 p~~~~~v~~~~~ 101 (206)
T PRK09140 90 PNTDPEVIRRAV 101 (206)
T ss_pred CCCCHHHHHHHH
Confidence 999887664443
No 142
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=47.83 E-value=26 Score=32.66 Aligned_cols=59 Identities=27% Similarity=0.341 Sum_probs=39.6
Q ss_pred CCCeeeecC-----CceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEE
Q 017962 232 SRPFRVNAG-----PVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 295 (363)
Q Consensus 232 ~RPFRVNAG-----aVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe 295 (363)
.|||-+-.- -+.=.+..-|..|+||..|+.||+|.+-...|+.- ..-. ..+|+++|=+-
T Consensus 44 ~R~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~l~~Gd~v~i~gP~G~~~--~~~~---~~~~~vlIagG 107 (246)
T cd06218 44 RRPISIHDVDPEEGTITLLYKVVGKGTRLLSELKAGDELDVLGPLGNGF--DLPD---DDGKVLLVGGG 107 (246)
T ss_pred CCceEeeeccCCCCEEEEEEEEECcchHHHhcCCCCCEEEEEecCCCCc--CCCC---CCCcEEEEecc
Confidence 466665332 23334555577899999999999999998888631 1212 46888887653
No 143
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=47.57 E-value=2.2e+02 Score=26.61 Aligned_cols=114 Identities=5% Similarity=0.059 Sum_probs=60.5
Q ss_pred CchhHHHHHHHhCcc--EEEEcccc-----hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc
Q 017962 20 ESKQVMTAAVERGWN--TFVFLSEN-----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 92 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~--~~v~~~~~-----~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~ 92 (363)
.+.+-+..|.+.|+| +|+|.+.. .+.++++.+. +++.-+.|++++ -.+++++.+++...
T Consensus 9 t~~eda~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~-------------~~~~~~~VgVf~-~~~~~~i~~~~~~~ 74 (207)
T PRK13958 9 TTIKDVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASA-------------VPNHIDKVCVVV-NPDLTTIEHILSNT 74 (207)
T ss_pred CcHHHHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHh-------------CCCCCCEEEEEe-CCCHHHHHHHHHhC
Confidence 356778899999999 58875543 2444544442 112234566543 33566666666544
Q ss_pred CCCceEEEeCCCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 93 GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 93 ~~~~~vvv~~~dW~iIPlEnliA~~q~~--~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
+-+.+-+++.-. . ..++.+... .-+++....-.++....+.-.+..+|.+||++.
T Consensus 75 -~~d~vQLHG~e~----~-~~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~ 131 (207)
T PRK13958 75 -SINTIQLHGTES----I-DFIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTP 131 (207)
T ss_pred -CCCEEEECCCCC----H-HHHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCC
Confidence 458888877422 2 233444321 135555543311111112222335899999974
No 144
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=47.27 E-value=53 Score=32.02 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=35.5
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
...|-.+++|.+||+.+ ++.|+|.|.|.+=.++++++..+.+
T Consensus 178 ~~~Igvev~t~eea~~A---~~~gaDyI~ld~~~~e~lk~~v~~~ 219 (265)
T TIGR00078 178 ALKIEVEVESLEEAEEA---AEAGADIIMLDNMKPEEIKEAVQLL 219 (265)
T ss_pred CCeEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35688999999997765 6899999999999999988877765
No 145
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=47.20 E-value=1.8e+02 Score=26.94 Aligned_cols=112 Identities=19% Similarity=0.233 Sum_probs=63.5
Q ss_pred chhHHHHHHHhCccEEEEcccch---------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQ---------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 91 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~---------~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~ 91 (363)
-.+++...-+.|++.+++-+=+. +.++++.+... -|+...+ -|.+.++.+.+...
T Consensus 29 ~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~-~pv~~~G---------------GI~s~~d~~~~l~~ 92 (243)
T cd04731 29 PVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVF-IPLTVGG---------------GIRSLEDARRLLRA 92 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCC-CCEEEeC---------------CCCCHHHHHHHHHc
Confidence 35777888889999877654221 23333332211 1333333 37888887776542
Q ss_pred cCCCceEEEeCC---CCeeeehhhhhhcccCCCceEEEEc--------------------CCHHHHHHHHHHhhcccCeE
Q 017962 92 DGQAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAIS--------------------KTPSEAQIFLEALEQGLGGI 148 (363)
Q Consensus 92 ~~~~~~vvv~~~---dW~iIPlEnliA~~q~~~~~l~a~v--------------------~~~~eA~~~~~~LE~G~dGV 148 (363)
.++.+++... +|.+ +++++.++... +++..+ .+.+....+....+.|+|.+
T Consensus 93 --G~~~v~ig~~~~~~p~~--~~~i~~~~~~~--~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i 166 (243)
T cd04731 93 --GADKVSINSAAVENPEL--IREIAKRFGSQ--CVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEI 166 (243)
T ss_pred --CCceEEECchhhhChHH--HHHHHHHcCCC--CEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEE
Confidence 4677777543 3332 45566665322 233222 13344566677788999999
Q ss_pred EEecCC
Q 017962 149 VLKVED 154 (363)
Q Consensus 149 vl~~~d 154 (363)
+++.-+
T Consensus 167 ~v~~i~ 172 (243)
T cd04731 167 LLTSMD 172 (243)
T ss_pred EEeccC
Confidence 996543
No 146
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=47.18 E-value=28 Score=31.46 Aligned_cols=50 Identities=20% Similarity=0.442 Sum_probs=36.0
Q ss_pred CCceeEEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEE
Q 017962 240 GPVHAYVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 295 (363)
Q Consensus 240 GaVHaYv~~-pgg-kT~YLSE-L~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe 295 (363)
|-+.=+|.. |+| -|+||.. |+.||.|.+....|+.-.. . ..+|+++|=+-
T Consensus 59 ~~i~~~i~~~~~G~~s~~l~~~l~~G~~v~v~gP~G~~~~~---~---~~~~~vlia~G 111 (228)
T cd06209 59 PRLEFLIRLLPGGAMSSYLRDRAQPGDRLTLTGPLGSFYLR---E---VKRPLLMLAGG 111 (228)
T ss_pred CeEEEEEEEcCCCcchhhHHhccCCCCEEEEECCcccceec---C---CCCeEEEEEcc
Confidence 555566665 655 4899998 9999999999998876321 1 24788887654
No 147
>COG4697 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.92 E-value=29 Score=34.99 Aligned_cols=71 Identities=24% Similarity=0.205 Sum_probs=47.2
Q ss_pred EEEEEEEcCCcceE-----EEeecC-----CCCCCceEEEeccCc--------------eEEEEeeccccCCCC------
Q 017962 181 TVTRVDVAGMGDRV-----CVDLCS-----LMRPGEGLLVGSFAR--------------GLFLVHSECLESNYI------ 230 (363)
Q Consensus 181 tVt~V~~vGmGdRV-----CVDtcs-----ll~~GEGmLVGs~s~--------------glfLVhsEt~e~~Yv------ 230 (363)
.|..+.-.|++.|. ||||-| +--.|||++.|-+-. ++|.-.+|.-+-|.-
T Consensus 177 ~i~d~a~Fg~~~~~~p~v~~id~esg~~~~~~~DGe~l~~~~~gA~~~~~~r~~a~~~Ggf~v~~pe~g~ep~f~r~~df 256 (319)
T COG4697 177 DISDKATFGLLLRIDPGVPQIDTESGAIFGMALDGEGLYIGASGANHTGVYRYRAGDGGGFAVPVPELGREPRFPRRIDF 256 (319)
T ss_pred eeeeeeeeeeecccCCCceeEeecccccccccccCCceeeccccceeeeEEEEEEecCceEEecCcccCCCccceEEEEe
Confidence 45566666777664 899876 445789999886432 344446676655532
Q ss_pred --CCCCeeeecCCceeEEEecCC
Q 017962 231 --ASRPFRVNAGPVHAYVLVPGG 251 (363)
Q Consensus 231 --a~RPFRVNAGaVHaYv~~pgg 251 (363)
+--|||+||+..--=++.|-+
T Consensus 257 ~~~YsPtr~nal~fGGgvli~Fn 279 (319)
T COG4697 257 HGSYSPTRGNALWFGGGVLIGFN 279 (319)
T ss_pred cCccCCcccccceecceeeeccc
Confidence 234999999988776666543
No 148
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.85 E-value=44 Score=32.96 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=34.8
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
..+|..++.|.+||+.+ ++.|+|.|.|++=++++++++.+.+
T Consensus 189 ~~~I~VEv~tleea~eA---~~~gaD~I~LD~~~~e~l~~~v~~~ 230 (277)
T PRK05742 189 GKPVEVEVESLDELRQA---LAAGADIVMLDELSLDDMREAVRLT 230 (277)
T ss_pred CCeEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35799999999997655 5889999999999999888777654
No 149
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=46.46 E-value=75 Score=37.06 Aligned_cols=91 Identities=12% Similarity=0.186 Sum_probs=59.2
Q ss_pred eeEEEEEEEEEcCCcceE-EE---eecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeee---e--cCCceeEEE
Q 017962 177 LMKATVTRVDVAGMGDRV-CV---DLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRV---N--AGPVHAYVL 247 (363)
Q Consensus 177 L~~atVt~V~~vGmGdRV-CV---Dtcsll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRV---N--AGaVHaYv~ 247 (363)
+-.|+|.+++.++-+-.- .+ +.+-..+||+=+.|-.+ +....+...+|||-+ + .|-+--.+.
T Consensus 790 ~l~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~---------~~g~~~l~~p~P~SI~~vD~e~g~It~i~r 860 (1028)
T PRK06567 790 LLTSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNY---------SEDAAKLIEPVALSPIDIDVEKGLISFIVF 860 (1028)
T ss_pred hhceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeC---------CCCCccccCceeEEeeccCCCCCEEEEEEE
Confidence 446888888888765322 12 11223567763333211 111123457789987 2 365677777
Q ss_pred ecCCceeeeeeccCCCeEEEEcCCCCeeE
Q 017962 248 VPGGKTCYLSELKSGKEVIVVDQKGRQRT 276 (363)
Q Consensus 248 ~pggkT~YLSEL~sG~eVLvVd~~G~~R~ 276 (363)
.-|.-|++|++|+.||.|-+...-|+.-.
T Consensus 861 vVGkgT~~Ls~l~~Gd~v~v~GPLG~pF~ 889 (1028)
T PRK06567 861 EVGKSTSLCKTLSENEKVVLMGPTGSPLE 889 (1028)
T ss_pred EEChHHHHHhcCCCCCEEEEEcccCCCCC
Confidence 77999999999999999999999997533
No 150
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=46.31 E-value=22 Score=34.65 Aligned_cols=58 Identities=19% Similarity=0.363 Sum_probs=37.8
Q ss_pred CCCeeeecCC-----ceeEEE-ecCCc-eeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 232 SRPFRVNAGP-----VHAYVL-VPGGK-TCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 232 ~RPFRVNAGa-----VHaYv~-~pggk-T~YLS-EL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
.|||-+-..| +-=+|. .|+|+ |+||. +|+.||+|.+-...|+-..- .-..+|++||=+
T Consensus 54 ~R~ySias~p~~~~~l~i~Vk~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~-----~~~~~~~vliAg 119 (332)
T PRK10684 54 LRAYTLSSTPGVSEFITLTVRRIDDGVGSQWLTRDVKRGDYLWLSDAMGEFTCD-----DKAEDKYLLLAA 119 (332)
T ss_pred eeeecccCCCCCCCcEEEEEEEcCCCcchhHHHhcCCCCCEEEEeCCccccccC-----CCCCCcEEEEec
Confidence 3677664333 222333 37666 89995 89999999998888875311 123578888865
No 151
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=45.99 E-value=2.2e+02 Score=25.50 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=14.9
Q ss_pred HHHHHHHhCccEEEEccc
Q 017962 24 VMTAAVERGWNTFVFLSE 41 (363)
Q Consensus 24 ~vt~AlEsG~~~~v~~~~ 41 (363)
.+..+.+.|+|.+.+..+
T Consensus 68 ~~~~~~~~Gad~i~vh~~ 85 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGV 85 (206)
T ss_pred HHHHHHHcCCCEEEEecc
Confidence 578899999999887654
No 152
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=45.69 E-value=1.5e+02 Score=28.40 Aligned_cols=128 Identities=17% Similarity=0.219 Sum_probs=67.3
Q ss_pred EEEEEeCchhHHHHHHHhCccEEEEcc----cc--------hhhhhhccce-eeeeeeeecCCccccCCCCeeEEEEEec
Q 017962 14 RVWIWTESKQVMTAAVERGWNTFVFLS----EN--------QQLAIDWSTI-ALLDPLFIKEGEVYDSGDRRVGSIIEVS 80 (363)
Q Consensus 14 ~vWvw~~~K~~vt~AlEsG~~~~v~~~----~~--------~~~~~~~~~i-~~i~~l~~~~g~~~~~~gk~v~~~~~v~ 80 (363)
-+++...+.+.+ --|+|+++|++ .| .+-++.++++ .+.. .+..|.++=..|..++.+....
T Consensus 56 Pvilfp~~~~~i----~~~aDa~l~~svlns~n~~~i~g~~~~~~~~~~~~~~~~e--~i~~gYiv~~~~~~v~~v~~a~ 129 (219)
T cd02812 56 PVILFPSNPEAV----SPGADAYLFPSVLNSGDPYWIIGAQAEAAPEVGKIIPWLE--LIPEGYLVLNPDSTVARVTGAK 129 (219)
T ss_pred CEEEeCCCcccc----CcCCCEEEEEeeecCCCchHHHHHHHHHHHHhcccccccc--ccceEEEEECCCCceeeeeccC
Confidence 355555555555 36799999986 22 2233333331 1111 1223444433455666555444
Q ss_pred ---Chhhhhh---hccccCCCceEEEeCCCCeeeehhhhhhccc-CC-Cce--EEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017962 81 ---TPQELQQ---LQPADGQAENIVIDLPDWQVIPAENIVASFQ-GS-GKT--VFAISKTPSEAQIFLEALEQGLGGIVL 150 (363)
Q Consensus 81 ---~~e~~e~---~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q-~~-~~~--l~a~v~~~~eA~~~~~~LE~G~dGVvl 150 (363)
++|+... ++..++ ...+-++.++=. +|.|.+ +++. .. +.. +=...+|.++|+.+ ++.|+|+|++
T Consensus 130 ~~~~~e~~~ayA~aae~~g-~~ivyLe~SG~~-~~~e~I-~~v~~~~~~~pl~vGGGIrs~e~a~~l---~~aGAD~VVV 203 (219)
T cd02812 130 TDLKPEDAAAYALAAEYLG-MPIVYLEYSGAY-GPPEVV-RAVKKVLGDTPLIVGGGIRSGEQAKEM---AEAGADTIVV 203 (219)
T ss_pred cCCCHHHHHHHHHHHHHcC-CeEEEeCCCCCc-CCHHHH-HHHHHhcCCCCEEEeCCCCCHHHHHHH---HHcCCCEEEE
Confidence 3444333 223344 667777743322 565544 3332 22 233 44467888888875 4789999999
Q ss_pred ecC
Q 017962 151 KVE 153 (363)
Q Consensus 151 ~~~ 153 (363)
-+-
T Consensus 204 Gsa 206 (219)
T cd02812 204 GNI 206 (219)
T ss_pred Cch
Confidence 873
No 153
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=45.30 E-value=1e+02 Score=29.20 Aligned_cols=113 Identities=9% Similarity=0.056 Sum_probs=60.6
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCceEEE
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~~~~~~~vvv 100 (363)
.+.+..+.++|++++++++-+.+...++-+. .++.|...+.++.-. +.+.++.+... ..+++.+
T Consensus 94 ~~fi~~~~~aG~~giiipDl~~ee~~~~~~~-------------~~~~g~~~i~~i~P~T~~~~i~~i~~~--~~~~vy~ 158 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLPPEEAEEFREA-------------AKEYGLDLIFLVAPTTPDERIKKIAEL--ASGFIYY 158 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCCHHHHHHHHHH-------------HHHcCCcEEEEeCCCCCHHHHHHHHhh--CCCCEEE
Confidence 6789999999999999976444322222211 123343333333333 34555555542 2344443
Q ss_pred eC----C-CCe--eeehhhhhhcccCCC-ce--EEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 101 DL----P-DWQ--VIPAENIVASFQGSG-KT--VFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 101 ~~----~-dW~--iIPlEnliA~~q~~~-~~--l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
-+ . ..+ .-+..+.|..+.+.. .. +=..+++.++++. +.+. +||+++-+.
T Consensus 159 ~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~---~~~~-ADgvVvGSa 217 (242)
T cd04724 159 VSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAE---VAKY-ADGVIVGSA 217 (242)
T ss_pred EeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHH---HHcc-CCEEEECHH
Confidence 22 1 222 123456666665432 22 3334666666665 5677 999999753
No 154
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=45.23 E-value=26 Score=32.16 Aligned_cols=60 Identities=27% Similarity=0.438 Sum_probs=38.7
Q ss_pred CCCCeeeecCC----ceeEEEe-c-CCceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEE
Q 017962 231 ASRPFRVNAGP----VHAYVLV-P-GGKTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 295 (363)
Q Consensus 231 a~RPFRVNAGa----VHaYv~~-p-ggkT~YLSE-L~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe 295 (363)
..|||-+--.| +.=.|.. | |.-|+||.+ |+.||+|.+....|... .. +...+|++||=+-
T Consensus 56 ~~R~ySi~s~~~~~~l~~~ik~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~~~---~~--~~~~~~llliagG 122 (247)
T cd06184 56 QIRQYSLSDAPNGDYYRISVKREPGGLVSNYLHDNVKVGDVLEVSAPAGDFV---LD--EASDRPLVLISAG 122 (247)
T ss_pred eeEEeEeccCCCCCeEEEEEEEcCCCcchHHHHhcCCCCCEEEEEcCCCceE---CC--CCCCCcEEEEecc
Confidence 35677663322 3334443 3 666999998 99999999988888642 11 1135788888653
No 155
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=45.19 E-value=1.5e+02 Score=26.79 Aligned_cols=58 Identities=31% Similarity=0.481 Sum_probs=37.6
Q ss_pred CCCeeee-----cCCceeEEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 232 SRPFRVN-----AGPVHAYVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 232 ~RPFRVN-----AGaVHaYv~~-pgg-kT~YLSE-L~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
.|||-+- .|-+.-+|.. ++| -|+||-. |+.||+|.+-...|+.... .-..+|+++|=+
T Consensus 41 ~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~-----~~~~~~ivliag 106 (224)
T cd06189 41 KRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELKENGLVRIEGPLGDFFLR-----EDSDRPLILIAG 106 (224)
T ss_pred ceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhccCCCEEEEecCCccEEec-----cCCCCCEEEEec
Confidence 4555553 3445556655 434 5889865 9999999999988876321 113578887754
No 156
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=44.49 E-value=60 Score=31.63 Aligned_cols=42 Identities=14% Similarity=0.034 Sum_probs=35.8
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
..+|..+++|.+||+.+ ++.|+|-|.|.+=.+++++++.+.+
T Consensus 182 ~~~Igvev~s~eea~~A---~~~gaDyI~ld~~~~e~l~~~~~~~ 223 (268)
T cd01572 182 TLKIEVEVETLEQLKEA---LEAGADIIMLDNMSPEELREAVALL 223 (268)
T ss_pred CCeEEEEECCHHHHHHH---HHcCCCEEEECCcCHHHHHHHHHHc
Confidence 34789999999998766 4789999999999999998887765
No 157
>PRK05802 hypothetical protein; Provisional
Probab=44.06 E-value=16 Score=36.06 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=52.4
Q ss_pred eeEEEEEEEEEcCCcc-eEEEeec-----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee-----cCCceeE
Q 017962 177 LMKATVTRVDVAGMGD-RVCVDLC-----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN-----AGPVHAY 245 (363)
Q Consensus 177 L~~atVt~V~~vGmGd-RVCVDtc-----sll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVN-----AGaVHaY 245 (363)
--+++|++++.+.-.- ++-++.- ..++||+ +.+|-..+ .+-...|||-+- .|-+-=.
T Consensus 64 ~~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQ---------Fv~l~~~~---~~~~~~rP~SI~~~~~~~g~l~l~ 131 (320)
T PRK05802 64 TYECKIIKKENIEDNLIILTLKVPHKLARDLVYPGS---------FVFLRNKN---SSSFFDVPISIMEADTEENIIKVA 131 (320)
T ss_pred cEeEEEEEEEEecCCEEEEEEECCchhhhccCCCCc---------eEEEEEcC---CCCEeEEeeEecccCCCCCEEEEE
Confidence 3468888888875432 2223321 1245665 33332211 111234888873 2434445
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCe
Q 017962 246 VLVPGGKTCYLSELKSGKEVIVVDQKGRQ 274 (363)
Q Consensus 246 v~~pggkT~YLSEL~sG~eVLvVd~~G~~ 274 (363)
+..-|..|+||.+|+.||+|.+...-|+.
T Consensus 132 ik~~G~~T~~L~~l~~Gd~l~v~GP~GnG 160 (320)
T PRK05802 132 IEIRGVKTKKIAKLNKGDEILLRGPYWNG 160 (320)
T ss_pred EEecChhHHHHhcCCCCCEEEEeCCCCcC
Confidence 55568889999999999999999998665
No 158
>PLN02334 ribulose-phosphate 3-epimerase
Probab=43.64 E-value=1e+02 Score=28.70 Aligned_cols=125 Identities=14% Similarity=0.192 Sum_probs=61.3
Q ss_pred hhHHHHHHHhCccEEEEcccc--hhhh-hhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC--Cc
Q 017962 22 KQVMTAAVERGWNTFVFLSEN--QQLA-IDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--AE 96 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~--~~~~-~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~--~~ 96 (363)
-+.+..|++.|+|.+.|.-+. .+.. +.+.. +.+.|..++..+.-.++.+ .+...... .|
T Consensus 78 ~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~--------------i~~~g~~iGls~~~~t~~~--~~~~~~~~~~~D 141 (229)
T PLN02334 78 EDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQ--------------IKSAGMKAGVVLNPGTPVE--AVEPVVEKGLVD 141 (229)
T ss_pred HHHHHHHHHcCCCEEEEeeccccchhHHHHHHH--------------HHHCCCeEEEEECCCCCHH--HHHHHHhccCCC
Confidence 456778899999988665541 1111 11111 1233566666543323333 22223334 78
Q ss_pred eEEE---e--CC--CCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEE-----ecCCH-HHHHHH
Q 017962 97 NIVI---D--LP--DWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVL-----KVEDV-KAVLAL 161 (363)
Q Consensus 97 ~vvv---~--~~--dW~iIPlEnliA~~q~~--~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl-----~~~d~-~ei~~l 161 (363)
++.+ . +. .|....++.+-. +... +..|.+ ..-. ..+.+-++++.|+||+++ ..+|+ ..++++
T Consensus 142 yi~~~~v~pg~~~~~~~~~~~~~i~~-~~~~~~~~~I~a-~GGI-~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l 218 (229)
T PLN02334 142 MVLVMSVEPGFGGQSFIPSMMDKVRA-LRKKYPELDIEV-DGGV-GPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGL 218 (229)
T ss_pred EEEEEEEecCCCccccCHHHHHHHHH-HHHhCCCCcEEE-eCCC-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHH
Confidence 8754 2 22 243344555432 2211 123333 2112 234566788999999976 44565 344445
Q ss_pred HHhh
Q 017962 162 KEYF 165 (363)
Q Consensus 162 ~~~~ 165 (363)
++.+
T Consensus 219 ~~~~ 222 (229)
T PLN02334 219 RASV 222 (229)
T ss_pred HHHH
Confidence 5444
No 159
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=43.47 E-value=85 Score=33.14 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=47.0
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC--eEEEecCC-
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG--GIVLKVED- 154 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~d--GVvl~~~d- 154 (363)
=|.+++|+..+.. + ++-++|-..-.+-=-+...+.+|.... -=|+..++++||+.+.+ .|+| |+++.+.+
T Consensus 218 GI~t~~d~~~~~~--~-~davLiG~~lm~~~d~~~~~~~L~~~~-vKICGit~~eda~~a~~---~GaD~lGfIf~~~Sp 290 (454)
T PRK09427 218 GIYTHAQVRELSP--F-ANGFLIGSSLMAEDDLELAVRKLILGE-NKVCGLTRPQDAKAAYD---AGAVYGGLIFVEKSP 290 (454)
T ss_pred CCCCHHHHHHHHh--c-CCEEEECHHHcCCCCHHHHHHHHhccc-cccCCCCCHHHHHHHHh---CCCCEEeeEeCCCCC
Confidence 3889999888743 3 787877333222222233333332222 23688899999988765 6888 77775554
Q ss_pred ----HHHHHHHHH
Q 017962 155 ----VKAVLALKE 163 (363)
Q Consensus 155 ----~~ei~~l~~ 163 (363)
+++++++.+
T Consensus 291 R~V~~~~a~~i~~ 303 (454)
T PRK09427 291 RYVSLEQAQEIIA 303 (454)
T ss_pred CCCCHHHHHHHHH
Confidence 455555544
No 160
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=43.46 E-value=95 Score=30.19 Aligned_cols=72 Identities=15% Similarity=0.137 Sum_probs=42.5
Q ss_pred ecChhhhhhhccccCCCceEEEeC-----CCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 79 VSTPQELQQLQPADGQAENIVIDL-----PDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 79 v~~~e~~e~~~~~~~~~~~vvv~~-----~dW~iIPlEnliA~~q~~--~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
+.++++...+.. ..++.|++.. .||.+..++.|....+.. +..||+. ......+-++.+|..|+|||.+-
T Consensus 180 v~s~~~a~~a~~--~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~-GGI~~~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 180 ILTPEDALRAVD--AGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLD-GGIRRGTDVLKALALGADAVLIG 256 (299)
T ss_pred cCCHHHHHHHHH--CCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEe-CCCCCHHHHHHHHHcCCCEEEEc
Confidence 567766443332 3578888844 368777777665433322 3455543 33334444455556899999998
Q ss_pred cC
Q 017962 152 VE 153 (363)
Q Consensus 152 ~~ 153 (363)
+.
T Consensus 257 ~~ 258 (299)
T cd02809 257 RP 258 (299)
T ss_pred HH
Confidence 74
No 161
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.26 E-value=1.3e+02 Score=27.49 Aligned_cols=118 Identities=14% Similarity=0.059 Sum_probs=69.8
Q ss_pred chhHHHHHHHhCccEEEEcccch---hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCce
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQ---QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 97 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~---~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 97 (363)
-.+++.++++.|++.+=++..+. +..+...++ .++. .+ ....+...++.+.+.. . .++.
T Consensus 26 ~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~---~~~~------------~~-g~gtvl~~d~~~~A~~-~-gAdg 87 (187)
T PRK07455 26 GLQMAEAVAAGGMRLIEITWNSDQPAELISQLREK---LPEC------------II-GTGTILTLEDLEEAIA-A-GAQF 87 (187)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHh---CCCc------------EE-eEEEEEcHHHHHHHHH-c-CCCE
Confidence 36788999999999888875332 222222222 1110 01 1223555566555433 2 5788
Q ss_pred EEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC----HHHHHHHHHhh
Q 017962 98 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED----VKAVLALKEYF 165 (363)
Q Consensus 98 vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d----~~ei~~l~~~~ 165 (363)
+++-..|-.+++.-+... ...++. +.|++|+..+. +.|+|=|-+-|.+ ++-+++++..+
T Consensus 88 v~~p~~~~~~~~~~~~~~-----~~~i~G-~~t~~e~~~A~---~~Gadyv~~Fpt~~~~G~~~l~~~~~~~ 150 (187)
T PRK07455 88 CFTPHVDPELIEAAVAQD-----IPIIPG-ALTPTEIVTAW---QAGASCVKVFPVQAVGGADYIKSLQGPL 150 (187)
T ss_pred EECCCCCHHHHHHHHHcC-----CCEEcC-cCCHHHHHHHH---HCCCCEEEECcCCcccCHHHHHHHHhhC
Confidence 888777776666544322 234555 89999986655 6899999766654 45555555544
No 162
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=43.25 E-value=1.6e+02 Score=27.02 Aligned_cols=101 Identities=20% Similarity=0.256 Sum_probs=55.4
Q ss_pred eeeEEEEEEEEEcCCc-ceEEEeecC---CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee------cCCceeE
Q 017962 176 SLMKATVTRVDVAGMG-DRVCVDLCS---LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN------AGPVHAY 245 (363)
Q Consensus 176 ~L~~atVt~V~~vGmG-dRVCVDtcs---ll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVN------AGaVHaY 245 (363)
....++|++++.+.-+ -++.+.... -++||+=+-|. +..+.. ...|||-+- .|-+-=+
T Consensus 16 ~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~--------~~~~~~----~~~r~ysi~s~~~~~~~~l~~~ 83 (243)
T cd06216 16 RELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLG--------VEIDGV----RHWRSYSLSSSPTQEDGTITLT 83 (243)
T ss_pred ceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEE--------EEECCe----EEEEEEeccCCCcCCCCeEEEE
Confidence 3447889999887432 244444322 24555544332 111110 113444443 3334444
Q ss_pred EEe-c-CCceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEe-ccceeEEEE
Q 017962 246 VLV-P-GGKTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIE-SRPLILVEA 294 (363)
Q Consensus 246 v~~-p-ggkT~YLSE-L~sG~eVLvVd~~G~~R~~~VGRvKIE-~RPLllIeA 294 (363)
+.. | |.-|.||.+ |+.||+|.+-...|+-. .+-+ .+|+++|=+
T Consensus 84 ik~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~------l~~~~~~~~v~iag 130 (243)
T cd06216 84 VKAQPDGLVSNWLVNHLAPGDVVELSQPQGDFV------LPDPLPPRLLLIAA 130 (243)
T ss_pred EEEcCCCcchhHHHhcCCCCCEEEEECCceeee------cCCCCCCCEEEEec
Confidence 444 4 445899986 99999999987777521 1222 578887754
No 163
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=43.10 E-value=27 Score=35.51 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=30.0
Q ss_pred CCeEEEEEeEe---------------cceEEEecCCCCCCCCCceeeeeecCCCCEEEEEecC--------------CCc
Q 017962 300 DQTLYGIILQN---------------AETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQG--------------AAR 350 (363)
Q Consensus 300 ~g~~~sviLQn---------------AETIrLv~p~~~~~~~g~~vsVt~Lk~GD~VL~~~~~--------------~gR 350 (363)
.|+.+.+..|| .+-|+++..+ .|.|++..++|.|.+|.|-.-. +.|
T Consensus 267 ~~~~~~i~fqNEnL~a~~~g~~~at~PDLI~~ld~~-----tG~pi~~~~~~~G~~V~Vi~~p~~~~w~t~~gl~~~gP~ 341 (353)
T PF06032_consen 267 KGRTLRIEFQNENLLAWRDGEVLATVPDLICLLDAE-----TGEPITTEELRYGQRVAVIAIPAPPLWRTPEGLEVVGPR 341 (353)
T ss_dssp TTEEEEEEESSSEEEEEETSS-SEETTSEEEEEE-S-----SS-----HHTTTTS-EEEEEE---GGGSS--HHHHHHHH
T ss_pred CCCEEEEEEEcCcEEEEECCeEEEECCcEEEEEecC-----CceecCcccccCCCEEEEEEeeCChhhcchhchhhcChh
Confidence 35566666666 4567788777 3799999999999999986432 257
Q ss_pred ccceeee
Q 017962 351 HTGIEIQ 357 (363)
Q Consensus 351 HfG~~I~ 357 (363)
|||+.++
T Consensus 342 ~FG~d~~ 348 (353)
T PF06032_consen 342 AFGYDID 348 (353)
T ss_dssp CTT--S-
T ss_pred hcCCCCC
Confidence 8887664
No 164
>PF14382 ECR1_N: Exosome complex exonuclease RRP4 N-terminal region; PDB: 2NN6_I 3M7N_C 2BA1_A 3M85_C.
Probab=43.06 E-value=18 Score=25.94 Aligned_cols=38 Identities=32% Similarity=0.527 Sum_probs=31.1
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEe
Q 017962 246 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE 285 (363)
Q Consensus 246 v~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE 285 (363)
+.+||.+-.--+|..+|.=..+ .+|+-+..++|.+++.
T Consensus 1 iV~PG~~l~~~~e~~~G~GTY~--~~g~I~asv~G~v~~~ 38 (39)
T PF14382_consen 1 IVVPGDRLGSSEEYMPGHGTYV--RDGNIYASVAGTVKID 38 (39)
T ss_dssp EE-TT-EEEETTTSEESTTEEE--ETTEEEESSSEEEEEE
T ss_pred CCCCCCEeecCCCEecCCCEEE--eCCEEEEEeeEEEEEc
Confidence 3579998888888999999888 5699999999999975
No 165
>PRK04302 triosephosphate isomerase; Provisional
Probab=43.05 E-value=1.8e+02 Score=26.97 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=52.8
Q ss_pred HHHHHHhCccEEEEccc-chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEEeCC
Q 017962 25 MTAAVERGWNTFVFLSE-NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLP 103 (363)
Q Consensus 25 vt~AlEsG~~~~v~~~~-~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~ 103 (363)
+..+-+.|+++++++.. ......++.++-. .....|-. .++.+.+.++++.+... ..+++-++..
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~----------~a~~~Gl~--~I~~v~~~~~~~~~~~~--~~~~I~~~p~ 143 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVE----------RAKKLGLE--SVVCVNNPETSAAAAAL--GPDYVAVEPP 143 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHH----------HHHHCCCe--EEEEcCCHHHHHHHhcC--CCCEEEEeCc
Confidence 67778899999998752 1111111110000 00111221 22345565655544321 2455555432
Q ss_pred CCee---ee--------hhhhhhcccC--CCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 104 DWQV---IP--------AENIVASFQG--SGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 104 dW~i---IP--------lEnliA~~q~--~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
|-+ .+ ++.+++.+.. .+..+++ .+++.++++. +++.|+|||++-+
T Consensus 144 -~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~---~~~~gadGvlVGs 203 (223)
T PRK04302 144 -ELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKA---ALELGADGVLLAS 203 (223)
T ss_pred -cccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHH---HHcCCCCEEEEeh
Confidence 311 11 3344444432 2345554 3556666655 5789999998754
No 166
>PF14623 Vint: Hint-domain
Probab=43.03 E-value=41 Score=31.23 Aligned_cols=72 Identities=21% Similarity=0.360 Sum_probs=52.6
Q ss_pred eeEEEecCCce-eeeeeccCCCeEEEEcCCCCeeEEeeeeEEEec--cceeEEEE-------------Ee----------
Q 017962 243 HAYVLVPGGKT-CYLSELKSGKEVIVVDQKGRQRTAVVGRVKIES--RPLILVEA-------------KT---------- 296 (363)
Q Consensus 243 HaYv~~pggkT-~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~--RPLllIeA-------------e~---------- 296 (363)
++-|.+.+|++ .-.++|++|+.|.. ..|..|.+.|=+.+++. -+|..|.- +-
T Consensus 6 ~s~V~l~~~~~~v~i~~lR~G~~V~t--p~G~r~V~~Vlkt~v~~~~~~lc~vg~LlvTPwHPv~~~g~W~FP~~~~~~~ 83 (162)
T PF14623_consen 6 SSLVTLASGRAPVRIDDLRAGDKVWT--PRGPRKVAAVLKTPVESGSEDLCRVGGLLVTPWHPVRIGGKWVFPADMASPQ 83 (162)
T ss_pred CcEEEEecCceeEEHHHccCCCEEEC--CCCCeEEEEEEEEeecCCceEEEEECCEEEcCCCCeeeCceeeCChhhccCc
Confidence 56788899999 99999999999876 55888888888888887 55554421 00
Q ss_pred cCCCCeEEEEEeEecceEEE
Q 017962 297 NSGDQTLYGIILQNAETVAL 316 (363)
Q Consensus 297 ~~~~g~~~sviLQnAETIrL 316 (363)
...-+..+|++||++-.|++
T Consensus 84 ~~~~~~VYSvlL~~~Hai~V 103 (162)
T PF14623_consen 84 VVYCGFVYSVLLEPDHAIMV 103 (162)
T ss_pred ccccccEEEEEEcCCCEEEE
Confidence 00123468999999977777
No 167
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=42.93 E-value=1.4e+02 Score=25.16 Aligned_cols=17 Identities=18% Similarity=0.050 Sum_probs=14.1
Q ss_pred HHHHHhCccEEEEcccc
Q 017962 26 TAAVERGWNTFVFLSEN 42 (363)
Q Consensus 26 t~AlEsG~~~~v~~~~~ 42 (363)
..+.+.|+|.+.+...+
T Consensus 78 ~~~~~~g~d~v~l~~~~ 94 (200)
T cd04722 78 AAARAAGADGVEIHGAV 94 (200)
T ss_pred HHHHHcCCCEEEEeccC
Confidence 48899999999888654
No 168
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=42.89 E-value=86 Score=30.21 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=62.3
Q ss_pred hCccEEEEcc----cc--------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEE---e-cChhhhhhhccccC-
Q 017962 31 RGWNTFVFLS----EN--------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIE---V-STPQELQQLQPADG- 93 (363)
Q Consensus 31 sG~~~~v~~~----~~--------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~---v-~~~e~~e~~~~~~~- 93 (363)
-++|+++|++ .+ .+-++.++++. .-.+..|.++=..|..++.+.+ + .+++++...+.+.+
T Consensus 70 ~~aDa~l~~svlNs~~~~~iig~~~~~~~~~~~~~---~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~ 146 (223)
T TIGR01768 70 RDADALFFPSVLNSDDPYWIIGAQIEAAPKFKKIG---EEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEE 146 (223)
T ss_pred cCCCEEEEEEeecCCCchHHHhHHHHHHHHHhhhc---ceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHH
Confidence 5788888885 12 22333344332 1112234333333444444332 2 35565555444333
Q ss_pred --CCceEEEeCC-CC-eeeehhhhhhccc---CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 94 --QAENIVIDLP-DW-QVIPAENIVASFQ---GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 94 --~~~~vvv~~~-dW-~iIPlEnliA~~q---~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
+.+.+-++.. .+ .-+|.|.+=+-.+ +..--+=..++|.++|+.++ +.|+|+|++-+-
T Consensus 147 ~~g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~---~aGAD~VVVGs~ 210 (223)
T TIGR01768 147 MLGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMA---EAGADTIVTGNV 210 (223)
T ss_pred HcCCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHH---HcCCCEEEECcH
Confidence 3578888843 33 4466655422212 22333456789999998865 569999999873
No 169
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=41.90 E-value=1.8e+02 Score=28.46 Aligned_cols=73 Identities=11% Similarity=0.153 Sum_probs=48.9
Q ss_pred CCceEEEeCCCC-----eeeehhhhhhcccC---CCceEEEEcCCHHH---HHHHHHHhhcccCeEEEe-cCCHHHHHHH
Q 017962 94 QAENIVIDLPDW-----QVIPAENIVASFQG---SGKTVFAISKTPSE---AQIFLEALEQGLGGIVLK-VEDVKAVLAL 161 (363)
Q Consensus 94 ~~~~vvv~~~dW-----~iIPlEnliA~~q~---~~~~l~a~v~~~~e---A~~~~~~LE~G~dGVvl~-~~d~~ei~~l 161 (363)
.+|.|+++..|= +----+|++..++. .+..++..+++.+. ..-...+|..|++||+|+ .++++++..+
T Consensus 24 gaD~vilDLEDav~~~~k~~AR~~v~~~l~~~~~~~~~~~VRIn~~~~~~~~~di~~~l~~g~~givlPKv~s~~~v~~~ 103 (288)
T TIGR01588 24 GADSVMFDLEDAVSLAEKDSARLLVYEALQTPDYGDTETVVRINGLDTPFGLADIKAVVKAGVDVVRLPKTDTAEDIHEL 103 (288)
T ss_pred CCCEEEEecccCCCcchHHHHHHHHHHHHhccCCCCCEEEEEECCCCChhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHH
Confidence 589999976652 22222334444422 34579999996543 455667788999999985 5678899888
Q ss_pred HHhhc
Q 017962 162 KEYFD 166 (363)
Q Consensus 162 ~~~~~ 166 (363)
.+++.
T Consensus 104 ~~~l~ 108 (288)
T TIGR01588 104 EKLIE 108 (288)
T ss_pred HHHHH
Confidence 77764
No 170
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=41.89 E-value=31 Score=31.59 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=34.4
Q ss_pred CCceeEEEe-c-CCceeeeeeccCCCeEEEE-cCCCCeeEEeeeeEEE-eccceeEEEEE
Q 017962 240 GPVHAYVLV-P-GGKTCYLSELKSGKEVIVV-DQKGRQRTAVVGRVKI-ESRPLILVEAK 295 (363)
Q Consensus 240 GaVHaYv~~-p-ggkT~YLSEL~sG~eVLvV-d~~G~~R~~~VGRvKI-E~RPLllIeAe 295 (363)
|-+.=++.. + |.-|+||++|+.||.|.+- ...|....- . . ..+|++||=+-
T Consensus 56 ~~i~~~i~~~~~G~~s~~l~~l~~Gd~v~v~~gP~G~f~~~---~--~~~~~~~vlIagG 110 (241)
T cd06195 56 ENLEFYIILVPDGPLTPRLFKLKPGDTIYVGKKPTGFLTLD---E--VPPGKRLWLLATG 110 (241)
T ss_pred CeEEEEEEEecCCCCchHHhcCCCCCEEEECcCCCCceeec---C--CCCCceEEEEeec
Confidence 444444442 4 5668899999999999998 888875321 1 1 24788887653
No 171
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=41.83 E-value=32 Score=34.36 Aligned_cols=37 Identities=8% Similarity=0.040 Sum_probs=29.0
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCccEEEEcccchhhhhh
Q 017962 10 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAID 48 (363)
Q Consensus 10 ~~~K~vWvw~-~~K~~vt~AlEsG~~~~v~~~~~~~~~~~ 48 (363)
...+.+++|| .+.+.|...++.|+|+++.+. .+...+
T Consensus 243 ~~Gl~V~vWTVNd~~~~~~l~~~GVDgIiTD~--P~~l~~ 280 (316)
T cd08610 243 AANIHTNVYVINEPWLFSLAWCSGIHSVTTNN--IHLLKQ 280 (316)
T ss_pred HCCCEEEEECCCCHHHHHHHHhCCcCEEEeCC--HHHHHH
Confidence 3467899999 568999999999999999865 344443
No 172
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=41.83 E-value=1.7e+02 Score=26.64 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=38.9
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~--~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..+.++++..-...=-+ .++..++. ....++..... .+......+++.|++|.+.+|.+++++.+.
T Consensus 49 ~~DlvilD~~~p~~~G~-eli~~l~~~~~~~~vI~ls~~-~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~ 116 (239)
T PRK10430 49 PIDLILLDIYMQQENGL-DLLPVLHEAGCKSDVIVISSA-ADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 (239)
T ss_pred CCCEEEEecCCCCCCcH-HHHHHHHhhCCCCCEEEEECC-CcHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 46777774332111111 23343332 23455555443 344556789999999999999998877543
No 173
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=41.80 E-value=35 Score=30.51 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=35.4
Q ss_pred CCceeEEEec--CCceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEe-ccceeEEEE
Q 017962 240 GPVHAYVLVP--GGKTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIE-SRPLILVEA 294 (363)
Q Consensus 240 GaVHaYv~~p--ggkT~YLSE-L~sG~eVLvVd~~G~~R~~~VGRvKIE-~RPLllIeA 294 (363)
|-+.=++..- |.-|+||.. |+.||.|.+....|+.. .+-+ .+|+++|=+
T Consensus 54 ~~~~~~i~~~~~G~~s~~l~~~l~~G~~v~i~gP~G~~~------~~~~~~~~~lliag 106 (224)
T cd06187 54 GEIEFHVRAVPGGRVSNALHDELKVGDRVRLSGPYGTFY------LRRDHDRPVLCIAG 106 (224)
T ss_pred CEEEEEEEeCCCCcchHHHhhcCccCCEEEEeCCccceE------ecCCCCCCEEEEec
Confidence 4555666664 556899987 99999999999988753 2223 578887753
No 174
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=41.74 E-value=30 Score=34.47 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=29.1
Q ss_pred CCcEEEEEe-CchhHHHHHHHhCccEEEEcccchhhhhhc
Q 017962 11 KPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAIDW 49 (363)
Q Consensus 11 ~~K~vWvw~-~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~ 49 (363)
..+.+++|| .+.+.|...++.|+|+++.+. .++..++
T Consensus 244 ~G~~v~vWTVNd~~~~~~l~~~GVDgIiTD~--P~~l~~~ 281 (315)
T cd08609 244 DNVSVNLWVVNEPWLFSLLWCSGVSSVTTNA--CQLLKDM 281 (315)
T ss_pred CCCEEEEECCCCHHHHHHHHhcCCCEEEcCC--HHHHHHh
Confidence 467899999 568999999999999999755 4444443
No 175
>PRK08051 fre FMN reductase; Validated
Probab=41.49 E-value=2.1e+02 Score=26.24 Aligned_cols=96 Identities=21% Similarity=0.197 Sum_probs=53.6
Q ss_pred EEEEEEEEEcCCcce-EEEee--cCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee-----cCCceeEEEe-c
Q 017962 179 KATVTRVDVAGMGDR-VCVDL--CSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN-----AGPVHAYVLV-P 249 (363)
Q Consensus 179 ~atVt~V~~vGmGdR-VCVDt--csll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVN-----AGaVHaYv~~-p 249 (363)
+++|+++++++-.=. +.+.. ---++||+=+.|. -..- ..|||-+- .|...=++.. |
T Consensus 4 ~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~---------~~~~------~~r~ySias~p~~~~~l~~~v~~~~ 68 (232)
T PRK08051 4 SCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVV---------MGEK------DKRPFSIASTPREKGFIELHIGASE 68 (232)
T ss_pred EEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEE---------cCCC------cceeecccCCCCCCCcEEEEEEEcC
Confidence 577888887763221 23321 1135666644443 1111 24666652 3344434555 4
Q ss_pred CCc--eeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 250 GGK--TCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 250 ggk--T~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
+++ +.++..|+.||+|.+-...|+.-.- . -..+|+++|=+
T Consensus 69 ~~~~~~~~~~~l~~G~~v~v~gP~G~~~~~---~--~~~~~~vliag 110 (232)
T PRK08051 69 LNLYAMAVMERILKDGEIEVDIPHGDAWLR---E--ESERPLLLIAG 110 (232)
T ss_pred CCcchHHHHHHcCCCCEEEEEcCCCceEcc---C--CCCCcEEEEec
Confidence 443 5677899999999999888875221 0 12478888753
No 176
>PRK09206 pyruvate kinase; Provisional
Probab=41.16 E-value=82 Score=33.52 Aligned_cols=123 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred eCchhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCC-CeeEEEEEecChhhhhhhccccCCCc
Q 017962 19 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGD-RRVGSIIEVSTPQELQQLQPADGQAE 96 (363)
Q Consensus 19 ~~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~g-k~v~~~~~v~~~e~~e~~~~~~~~~~ 96 (363)
+.|++-+.-|++-|+|.+-+.- .+++.+.++.++ +...| +.+.++.+|.+++-++.+..-+...|
T Consensus 172 ekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~-------------l~~~~~~~~~iiaKIEt~eav~nldeIl~~~D 238 (470)
T PRK09206 172 EKDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREH-------------LKAHGGENIQIISKIENQEGLNNFDEILEASD 238 (470)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHH-------------HHHcCCCCceEEEEECCHHHHHhHHHHHHhCC
Q ss_pred eEEEeCCCCee-eehhh-------hhhcccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017962 97 NIVIDLPDWQV-IPAEN-------IVASFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED 154 (363)
Q Consensus 97 ~vvv~~~dW~i-IPlEn-------liA~~q~~~~~l~a-----------~v~~~~eA~~~~~~LE~G~dGVvl~~~d 154 (363)
-+.|-..|--+ +|.|. +|......+.-+|. ...+-.|+--.+.+..-|+|+|+|.-+.
T Consensus 239 gImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ET 315 (470)
T PRK09206 239 GIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGES 315 (470)
T ss_pred EEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechh
No 177
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=40.96 E-value=83 Score=33.51 Aligned_cols=121 Identities=14% Similarity=0.099 Sum_probs=70.0
Q ss_pred EeCchhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCce
Q 017962 18 WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 97 (363)
Q Consensus 18 w~~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 97 (363)
-.+.++.+.+.+|.|+|-++++..|-.....|..+.+|+..+ . +.. .+...|.+.++-..+.. ..+|.
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~-p--------~~~-vi~g~v~t~e~a~~a~~--aGaD~ 313 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTY-P--------ELD-VIGGNVVTMYQAQNLIQ--AGVDG 313 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhC-C--------CCc-EEEecCCCHHHHHHHHH--cCcCE
Confidence 346799999999999999999876544334344444433211 0 111 11235888888555553 35787
Q ss_pred EEEe--------CC-CC-----eeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 98 IVID--------LP-DW-----QVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 98 vvv~--------~~-dW-----~iIPlEnliA~~q~~~~~l~a~--v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
|++. .. .+ +.=++.++-...+..+..|||. +.+..++. .+|..|+|+|++-+-
T Consensus 314 i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~---kAla~GA~~V~vGs~ 382 (505)
T PLN02274 314 LRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIV---KALTLGASTVMMGSF 382 (505)
T ss_pred EEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHH---HHHHcCCCEEEEchh
Confidence 7763 11 01 2223333333333335567774 56666655 456689999998653
No 178
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=40.07 E-value=3e+02 Score=26.25 Aligned_cols=120 Identities=11% Similarity=0.115 Sum_probs=60.0
Q ss_pred CchhHHHHHHHhCccEEEEccc---chhhhhhccce----eeeeeeeecCCccccCCCCeeEEEE----Eec--Chhhhh
Q 017962 20 ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTI----ALLDPLFIKEGEVYDSGDRRVGSII----EVS--TPQELQ 86 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~---~~~~~~~~~~i----~~i~~l~~~~g~~~~~~gk~v~~~~----~v~--~~e~~e 86 (363)
++-+-+...++.|++.+++... +.++.+++.+- ..+-.+-+++|. .|. .-++. +.. ++.++-
T Consensus 84 ~s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~----~~~-~~v~~~gw~~~~~~~~~e~~ 158 (258)
T PRK01033 84 KTLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKNL----GGK-FDVYTHNGTKKLKKDPLELA 158 (258)
T ss_pred CCHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCC----CCc-EEEEEcCCeecCCCCHHHHH
Confidence 3456677778899999998763 33444444321 122222223330 111 00111 111 122222
Q ss_pred hhccccCCCceEEEeCC---------CCeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 017962 87 QLQPADGQAENIVIDLP---------DWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 87 ~~~~~~~~~~~vvv~~~---------dW~iIPlEnliA~~q~~~~~l~a~--v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
..... ..++.+++... ||..| +.+.. ..+..|++. +.|.++++.+++ +.|+|||++..
T Consensus 159 ~~~~~-~g~~~ii~~~i~~~G~~~G~d~~~i--~~~~~---~~~ipvIasGGv~s~eD~~~l~~--~~GvdgVivg~ 227 (258)
T PRK01033 159 KEYEA-LGAGEILLNSIDRDGTMKGYDLELL--KSFRN---ALKIPLIALGGAGSLDDIVEAIL--NLGADAAAAGS 227 (258)
T ss_pred HHHHH-cCCCEEEEEccCCCCCcCCCCHHHH--HHHHh---hCCCCEEEeCCCCCHHHHHHHHH--HCCCCEEEEcc
Confidence 22222 23567777633 35443 22222 234456654 889999887764 45999998754
No 179
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=39.98 E-value=1.5e+02 Score=27.03 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=19.1
Q ss_pred CchhHHHHHHHhCccEEEEccc
Q 017962 20 ESKQVMTAAVERGWNTFVFLSE 41 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~ 41 (363)
.+.+-+..+++.|++.+++...
T Consensus 84 ~~~ed~~~~~~~Ga~~vilg~~ 105 (233)
T PRK00748 84 RSLETVEALLDAGVSRVIIGTA 105 (233)
T ss_pred CCHHHHHHHHHcCCCEEEECch
Confidence 5788899999999999998863
No 180
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=39.84 E-value=1.4e+02 Score=28.64 Aligned_cols=126 Identities=13% Similarity=0.018 Sum_probs=64.7
Q ss_pred CchhHHHHHHHhCccEEEEccc---chhhhhhcccee--eeeeeeec---CCccccCCCCeeEEEEEecChhhhhhhccc
Q 017962 20 ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIA--LLDPLFIK---EGEVYDSGDRRVGSIIEVSTPQELQQLQPA 91 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~---~~~~~~~~~~i~--~i~~l~~~---~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~ 91 (363)
++.+-+...++.|++.+++... +.++.+++.+.- ++ .+.+| +| ++..++.-....+.-++..+...
T Consensus 84 rs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~i-vvslD~k~~g-----~~~~v~~~Gw~~~~~~~~~~~~~ 157 (243)
T TIGR01919 84 RDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIV-AVGLDVLEDG-----EWHTLGNRGWSDGGGDLEVLERL 157 (243)
T ss_pred CCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccE-EEEEEEecCC-----ceEEEECCCeecCCCcHHHHHHH
Confidence 6899999999999999998763 345555554321 11 12222 22 11222211111122233333322
Q ss_pred cC--CCceEEEeCC--C-C-eeeehhhhhhccc-CCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 92 DG--QAENIVIDLP--D-W-QVIPAENIVASFQ-GSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 92 ~~--~~~~vvv~~~--d-W-~iIPlEnliA~~q-~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
+. .+..+|+..- | = +=+.+| ++.++. ..+..+++ .++|.+|-+.....-+.|+||+++-.
T Consensus 158 ~~~~g~~~ii~tdI~~dGt~~G~d~~-l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~ 226 (243)
T TIGR01919 158 LDSGGCSRVVVTDSKKDGLSGGPNEL-LLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGK 226 (243)
T ss_pred HHhCCCCEEEEEecCCcccCCCcCHH-HHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhH
Confidence 21 2345555321 1 1 123333 222222 23456665 48999998876555578999999754
No 181
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=39.80 E-value=35 Score=30.72 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=34.5
Q ss_pred CCceeEEEec--CCceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 240 GPVHAYVLVP--GGKTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 240 GaVHaYv~~p--ggkT~YLS-EL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
|-+.=++..- |.-|+||. .|+.||+|.+-...|..... .-+.+|+++|=.
T Consensus 59 ~~l~~~vk~~~~G~~s~~l~~~~~~G~~v~i~gP~G~f~~~-----~~~~~~~vlIag 111 (231)
T cd06215 59 DSLSITVKRVPGGLVSNWLHDNLKVGDELWASGPAGEFTLI-----DHPADKLLLLSA 111 (231)
T ss_pred CcEEEEEEEcCCCcchHHHHhcCCCCCEEEEEcCcceeEeC-----CCCCCcEEEEec
Confidence 3355556554 66799996 79999999999888865221 112588888754
No 182
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=39.64 E-value=56 Score=34.10 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=45.9
Q ss_pred Chhhhhhhcccc-CCCceEEEeCCCCeeeehhhhhhcccCC--CceE-EEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 81 TPQELQQLQPAD-GQAENIVIDLPDWQVIPAENIVASFQGS--GKTV-FAISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 81 ~~e~~e~~~~~~-~~~~~vvv~~~dW~iIPlEnliA~~q~~--~~~l-~a~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
++++++++.... ..+|.|+++..+-.-..+.++|..+... +..| .+.+.|.++|+.+.. .|+|+|.+-
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~---aGaD~I~vG 222 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS---VGADCLKVG 222 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH---cCCCEEEEC
Confidence 355555655444 3599999988875556666777666543 2334 448888888887664 699999754
No 183
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=39.38 E-value=2.4e+02 Score=26.92 Aligned_cols=91 Identities=26% Similarity=0.371 Sum_probs=55.4
Q ss_pred EecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEe---cCCCCeE----EEEEeEecceEEEecC
Q 017962 247 LVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKT---NSGDQTL----YGIILQNAETVALVSP 319 (363)
Q Consensus 247 ~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~---~~~~g~~----~sviLQnAETIrLv~p 319 (363)
.+||+.-. -+|..+|+-+.. .+|+-+....|++++..+ ++.|+... -..-|.. +.-+-.+-|.+.+-.+
T Consensus 11 V~PGd~l~-~~~~~~G~Gty~--~~g~i~As~~G~~~~~~~-~i~V~p~~~~y~P~vGDiViG~V~~i~~~~~~vdI~~~ 86 (235)
T PRK04163 11 VVPGDLLA-EGEFKAGRGTYK--ENGKIYSTVVGLVDIKDD-KVRVIPLEGKYIPKVGDLVIGKVTDVTFSGWEVDINSP 86 (235)
T ss_pred ECCCCCcC-cCCeecCCceEE--eCCEEEEEEeEEEEEECC-EEEEEECCCcccCCCCCEEEEEEEEEeCceEEEEeCCC
Confidence 46888865 477888888754 689999999999998764 44444411 0001111 2334556666666322
Q ss_pred CCCCCCCCceeeee----------------ecCCCCEEEEEecC
Q 017962 320 CKGTGEQEKAIPVT----------------SLKVGDEVLLRVQG 347 (363)
Q Consensus 320 ~~~~~~~g~~vsVt----------------~Lk~GD~VL~~~~~ 347 (363)
-. .-++.. .|++||.|.+++..
T Consensus 87 ~~------g~L~~s~i~~~~~~~d~~~~~~~~~~GDlV~akV~~ 124 (235)
T PRK04163 87 YK------AYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAKVKD 124 (235)
T ss_pred ce------eEEEHHHcCCCccccchhhhHhhCCCCCEEEEEEEE
Confidence 11 112222 17999999999764
No 184
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=39.31 E-value=14 Score=36.75 Aligned_cols=18 Identities=28% Similarity=0.767 Sum_probs=16.2
Q ss_pred eEEEeecCCCCCCceEEE
Q 017962 193 RVCVDLCSLMRPGEGLLV 210 (363)
Q Consensus 193 RVCVDtcsll~~GEGmLV 210 (363)
.||+|||.++..|.|+..
T Consensus 171 gvCiDtcH~~Aagy~~~~ 188 (280)
T COG0648 171 GVCIDTCHAFAAGYDIIT 188 (280)
T ss_pred EEEEEchhhhhccCCcCc
Confidence 489999999999999865
No 185
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.19 E-value=1.3e+02 Score=29.27 Aligned_cols=114 Identities=11% Similarity=0.113 Sum_probs=62.3
Q ss_pred chhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccccCCCceEE
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIV 99 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~e~~e~~~~~~~~~~~vv 99 (363)
-.+.+..|-|+|+|++++++=-.+...++... .++.|-....++.-++ .+.++.++.... +++-
T Consensus 106 ~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~-------------~~~~gl~~I~lvap~t~~eri~~i~~~s~--gfIY 170 (258)
T PRK13111 106 VERFAADAAEAGVDGLIIPDLPPEEAEELRAA-------------AKKHGLDLIFLVAPTTTDERLKKIASHAS--GFVY 170 (258)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHHHHHHHHH-------------HHHcCCcEEEEeCCCCCHHHHHHHHHhCC--CcEE
Confidence 46789999999999999985222322222211 1122322223233333 445555555542 3332
Q ss_pred E-e---CCCCe-e--eehhhhhhcccCC-CceE--EEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 100 I-D---LPDWQ-V--IPAENIVASFQGS-GKTV--FAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 100 v-~---~~dW~-i--IPlEnliA~~q~~-~~~l--~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
+ . .++++ - -++++.+..+.+. +..+ -..++|.++++.++ + ++|||++-+.
T Consensus 171 ~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~---~-~ADGviVGSa 230 (258)
T PRK13111 171 YVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIA---A-VADGVIVGSA 230 (258)
T ss_pred EEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHH---H-hCCEEEEcHH
Confidence 2 1 23442 2 2366666666543 3333 34567888888766 3 3999999874
No 186
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=39.16 E-value=2.1e+02 Score=24.27 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=41.4
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~~--~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
..+.++++......- --+++..++.. ...++... +..+......+++.|+++++.+|.+++++...-..+
T Consensus 45 ~~dlvi~d~~~~~~~-g~~~~~~l~~~~~~~~ii~ls-~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~ 116 (204)
T PRK09958 45 KPDIVIIDVDIPGVN-GIQVLETLRKRQYSGIIIIVS-AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 (204)
T ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHhhCCCCeEEEEe-CCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHH
Confidence 456677743322221 12344444432 23444443 345556667889999999999999998876554433
No 187
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=39.14 E-value=2e+02 Score=25.79 Aligned_cols=90 Identities=13% Similarity=0.016 Sum_probs=52.1
Q ss_pred eEEEEEecChhh--hhhhccccCCCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHH-HHHHHHHhhcccCeEE
Q 017962 73 VGSIIEVSTPQE--LQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSE-AQIFLEALEQGLGGIV 149 (363)
Q Consensus 73 v~~~~~v~~~e~--~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~e-A~~~~~~LE~G~dGVv 149 (363)
+..-..+.++.. .+.+. ...++++++....-. .=++.++...+..+.+++..+.++.+ ...+..+++.|+|-|-
T Consensus 55 i~~d~k~~d~~~~~~~~~~--~~Gad~i~vh~~~~~-~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~ 131 (206)
T TIGR03128 55 VLADLKTMDAGEYEAEQAF--AAGADIVTVLGVADD-ATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIG 131 (206)
T ss_pred EEEEEeeccchHHHHHHHH--HcCCCEEEEeccCCH-HHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEE
Confidence 333344556653 33322 235788888765311 11366777777777788877644422 2334445677999888
Q ss_pred EecC---------CHHHHHHHHHhh
Q 017962 150 LKVE---------DVKAVLALKEYF 165 (363)
Q Consensus 150 l~~~---------d~~ei~~l~~~~ 165 (363)
+.|. .++.++++++.+
T Consensus 132 ~~pg~~~~~~~~~~~~~i~~l~~~~ 156 (206)
T TIGR03128 132 VHTGLDEQAKGQNPFEDLQTILKLV 156 (206)
T ss_pred EcCCcCcccCCCCCHHHHHHHHHhc
Confidence 8653 345566666554
No 188
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=39.13 E-value=2.1e+02 Score=23.13 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=66.6
Q ss_pred cEEEEEeCchhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccc
Q 017962 13 KRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPA 91 (363)
Q Consensus 13 K~vWvw~~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~e~~e~~~~~ 91 (363)
.++++-+.+.+-...|.+.|++.++...+ .+..+++.++. + +..+-..++..+ ++.++.....
T Consensus 15 ~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~-~~~~~~i~~~~-------------~--~~~~d~vid~~g~~~~~~~~~~~ 78 (130)
T PF00107_consen 15 AKVIATDRSEEKLELAKELGADHVIDYSD-DDFVEQIRELT-------------G--GRGVDVVIDCVGSGDTLQEAIKL 78 (130)
T ss_dssp SEEEEEESSHHHHHHHHHTTESEEEETTT-SSHHHHHHHHT-------------T--TSSEEEEEESSSSHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHhhcccccccccc-ccccccccccc-------------c--cccceEEEEecCcHHHHHHHHHH
Confidence 45666666666677777888887775543 22333333331 1 123345567776 7777776666
Q ss_pred cCC-CceEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCC-HHHHHHHHHHhh
Q 017962 92 DGQ-AENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKT-PSEAQIFLEALE 142 (363)
Q Consensus 92 ~~~-~~~vvv~~~--dW~iIPlEnliA~~q~~~~~l~a~v~~-~~eA~~~~~~LE 142 (363)
+++ +..+++-.. ++..+|.-+++.. +.++...... .+|.+.+++-|.
T Consensus 79 l~~~G~~v~vg~~~~~~~~~~~~~~~~~----~~~i~g~~~~~~~~~~~~~~~la 129 (130)
T PF00107_consen 79 LRPGGRIVVVGVYGGDPISFNLMNLMFK----EITIRGSWGGSPEDFQEALQLLA 129 (130)
T ss_dssp EEEEEEEEEESSTSTSEEEEEHHHHHHT----TEEEEEESSGGHHHHHHHHHHHH
T ss_pred hccCCEEEEEEccCCCCCCCCHHHHHhC----CcEEEEEccCCHHHHHHHHHHhc
Confidence 666 444444444 5778888888874 4456655544 488888877654
No 189
>PRK15447 putative protease; Provisional
Probab=39.09 E-value=1.8e+02 Score=28.51 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred Ee-CchhHHHHHH-HhCccEEEEcccc---------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEE-Ee-cChhh
Q 017962 18 WT-ESKQVMTAAV-ERGWNTFVFLSEN---------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSII-EV-STPQE 84 (363)
Q Consensus 18 w~-~~K~~vt~Al-EsG~~~~v~~~~~---------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~-~v-~~~e~ 84 (363)
|. .+.+-+-+|+ ++|+|+|.+..+. .++.+.+..+ ...||++.+.. .| ..+++
T Consensus 12 ~p~~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~--------------~~~gkkvyva~p~i~~~~~e 77 (301)
T PRK15447 12 WPKETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERL--------------AAAGKEVVLSTLALVEAPSE 77 (301)
T ss_pred CCCCCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHH--------------HHcCCEEEEEecccccCHHH
Q ss_pred hhhhccccCCCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHHHHHH
Q 017962 85 LQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLALKE 163 (363)
Q Consensus 85 ~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~-d~~ei~~l~~ 163 (363)
++.+..........|+ ..||..+ .++..+ .-.-....--|.--...+-.-.+.|++.|+|..+ +..||+++.+
T Consensus 78 ~~~l~~~l~~~~~~v~-v~d~g~l---~~~~e~--~~~l~~d~~lni~N~~a~~~l~~~G~~rv~ls~ELsl~eI~~i~~ 151 (301)
T PRK15447 78 LKELRRLVENGEFLVE-ANDLGAV---RLLAER--GLPFVAGPALNCYNAATLALLARLGATRWCMPVELSRDWLANLLA 151 (301)
T ss_pred HHHHHHHHhcCCCEEE-EeCHHHH---HHHHhc--CCCEEEecccccCCHHHHHHHHHcCCcEEEECCcCCHHHHHHHHH
No 190
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=38.98 E-value=21 Score=32.46 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=13.3
Q ss_pred cCCCCEEEEEecCCC
Q 017962 335 LKVGDEVLLRVQGAA 349 (363)
Q Consensus 335 Lk~GD~VL~~~~~~g 349 (363)
-+|||+|++|++.+|
T Consensus 128 a~~~DeV~~rLES~G 142 (155)
T PF08496_consen 128 ATPEDEVLVRLESPG 142 (155)
T ss_pred CCCCCeEEEEEecCC
Confidence 479999999999876
No 191
>PRK08114 cystathionine beta-lyase; Provisional
Probab=38.95 E-value=22 Score=36.50 Aligned_cols=125 Identities=11% Similarity=0.169 Sum_probs=73.8
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeee---eee-cCC---------ccccCCCCeeEEEEEecChhhhhhh
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP---LFI-KEG---------EVYDSGDRRVGSIIEVSTPQELQQL 88 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~---l~~-~~g---------~~~~~~gk~v~~~~~v~~~e~~e~~ 88 (363)
=+-.-++||.|-.+++|++.......-+..+ .++ +++ ++. ..++..|.++ .++...+.++++.+
T Consensus 67 le~~la~LEg~~~a~~~~SGmaAi~~~~~~l--l~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v-~~vd~~d~~~l~~~ 143 (395)
T PRK08114 67 LQEAMCELEGGAGCALYPCGAAAVANAILAF--VEQGDHVLMTGTAYEPTQDFCSKILSKLGVTT-TWFDPLIGADIAKL 143 (395)
T ss_pred HHHHHHHHhCCCeEEEEhHHHHHHHHHHHHH--cCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEE-EEECCCCHHHHHHh
Confidence 3455678999999999988443322222111 222 233 222 1234456543 33444455554443
Q ss_pred ccccCCCceEEEeCC---CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 89 QPADGQAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 89 ~~~~~~~~~vvv~~~---dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
-. .+...|.++.. -.++.|++.|.+.+...+..++..|.+.--.-..+..++.|+|=|+-.
T Consensus 144 l~--~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S 207 (395)
T PRK08114 144 IQ--PNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQA 207 (395)
T ss_pred cC--CCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEc
Confidence 22 23566777655 467899999998876542236667777766667799999999966643
No 192
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=38.92 E-value=82 Score=30.58 Aligned_cols=42 Identities=21% Similarity=0.134 Sum_probs=35.9
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
...|...++|.+||+.++ +.|+|-|.|.+=++++++++.+.+
T Consensus 181 ~~~I~vev~t~eea~~A~---~~gaD~I~ld~~~~e~l~~~v~~i 222 (269)
T cd01568 181 EKKIEVEVETLEEAEEAL---EAGADIIMLDNMSPEELKEAVKLL 222 (269)
T ss_pred CCeEEEecCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHh
Confidence 357999999999988775 579999999999999998877766
No 193
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=38.70 E-value=39 Score=32.05 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=30.8
Q ss_pred cCC-ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 249 PGG-KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 249 pgg-kT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
|+| -|+||.+|+.||+|.+-...|+... +-..+|++||=+
T Consensus 118 ~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l------~~~~~~~vlIAg 158 (283)
T cd06188 118 PPGIGSSYIFNLKPGDKVTASGPFGEFFI------KDTDREMVFIGG 158 (283)
T ss_pred CCceehhHHhcCCCCCEEEEECccccccc------cCCCCcEEEEEe
Confidence 444 4789999999999999999997632 124689999865
No 194
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=38.65 E-value=2.4e+02 Score=25.03 Aligned_cols=112 Identities=12% Similarity=0.043 Sum_probs=55.1
Q ss_pred hhHHHHHHHhCccEEEEcccc-hhhhhhccceeeeeeeeecCCccccCCCCeeEE-EEEecChhhhhhhccccCCCceEE
Q 017962 22 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGS-IIEVSTPQELQQLQPADGQAENIV 99 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~-~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~-~~~v~~~e~~e~~~~~~~~~~~vv 99 (363)
...+..+.+.|+|.+++..+. .+...++-+. .++.|.+.+. .....++++..+ ......+++.
T Consensus 67 ~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~-------------~~~~g~~~~v~~~~~~t~~e~~~--~~~~~~d~v~ 131 (202)
T cd04726 67 ALEAEMAFKAGADIVTVLGAAPLSTIKKAVKA-------------AKKYGKEVQVDLIGVEDPEKRAK--LLKLGVDIVI 131 (202)
T ss_pred HHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHH-------------HHHcCCeEEEEEeCCCCHHHHHH--HHHCCCCEEE
Confidence 346788999999999986532 1111111111 1122444433 244556666544 2223678887
Q ss_pred EeC----CCCeeeehhhhhhcccC-CCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 100 IDL----PDWQVIPAENIVASFQG-SGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 100 v~~----~dW~iIPlEnliA~~q~-~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
+.. ..+..-.-...+.++.. .+..+.+ .++ .+ .+-++++.|+||+++-+
T Consensus 132 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~-~~---~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 132 LHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGIT-PD---TLPEFKKAGADIVIVGR 187 (202)
T ss_pred EcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcC-HH---HHHHHHhcCCCEEEEee
Confidence 731 11111111222232221 2222332 332 43 45677889999998765
No 195
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=38.59 E-value=2.1e+02 Score=26.44 Aligned_cols=107 Identities=16% Similarity=0.162 Sum_probs=56.7
Q ss_pred eeeeeeecCCccccC-CCCeeEEEEEecChhhhhhhccccCCCceEEEeCCCCe---eeehhhhhhccc-CCCceEEE--
Q 017962 54 LLDPLFIKEGEVYDS-GDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQ---VIPAENIVASFQ-GSGKTVFA-- 126 (363)
Q Consensus 54 ~i~~l~~~~g~~~~~-~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~---iIPlEnliA~~q-~~~~~l~a-- 126 (363)
.|..|.+.+|..+.. +|+.--..+...++.++-+.... ...+++.+...|=. ....-++|.++- ..+..++.
T Consensus 5 iip~idl~~g~~v~~~~g~~~~~~~~~~~~~e~a~~~~~-~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~G 83 (241)
T PRK13585 5 VIPAVDMKGGKCVQLVQGEPGTETVSYGDPVEVAKRWVD-AGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGG 83 (241)
T ss_pred EEEEEEeECCeEEEeeccccCCceEECCCHHHHHHHHHH-cCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcC
Confidence 344577788876543 23211112234566665554443 34677777655421 112222333221 12223333
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEecCCH---HHHHHHHHh
Q 017962 127 ISKTPSEAQIFLEALEQGLGGIVLKVEDV---KAVLALKEY 164 (363)
Q Consensus 127 ~v~~~~eA~~~~~~LE~G~dGVvl~~~d~---~ei~~l~~~ 164 (363)
.+++.++++.++. .|+|+|++.+... +-+.++.+.
T Consensus 84 Gi~~~~~~~~~~~---~Ga~~v~iGs~~~~~~~~~~~i~~~ 121 (241)
T PRK13585 84 GIRSAEDAASLLD---LGVDRVILGTAAVENPEIVRELSEE 121 (241)
T ss_pred CcCCHHHHHHHHH---cCCCEEEEChHHhhChHHHHHHHHH
Confidence 5689999998875 7999999998654 444444333
No 196
>PHA00440 host protein H-NS-interacting protein
Probab=38.48 E-value=19 Score=31.01 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhcccccccceeeeeEEEEEEE
Q 017962 130 TPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRV 185 (363)
Q Consensus 130 ~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~~~~~~~~~~l~L~~atVt~V 185 (363)
|+-+.+....+|-+|.||++--.---+--..+|+...+ ..++..+...||||..+
T Consensus 43 ~~~~re~lvqaLT~G~egai~F~~k~giRe~IKe~~~E-~~d~~~~k~sPATvRev 97 (98)
T PHA00440 43 NPKDKELLVQALTHGPEGAAAFAVRQGIREAIKDMHEE-STDKDLFKFSPATVREV 97 (98)
T ss_pred ChHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhHh-hccCcceeecCceEEec
Confidence 89999999999999999987322111111222343322 13456689999999875
No 197
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=38.46 E-value=1.2e+02 Score=28.50 Aligned_cols=118 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe-----------cChhhhhhh
Q 017962 20 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-----------STPQELQQL 88 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-----------~~~e~~e~~ 88 (363)
++.+-+..+++.|++.+++...-......+.++ ...=+.++...+.+ .+..+...+
T Consensus 85 rs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i-------------~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~ 151 (241)
T PRK14024 85 RDDESLEAALATGCARVNIGTAALENPEWCARV-------------IAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEV 151 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhCCHHHHHHH-------------HHHhhhhEEEEEEEeccEeccCCeeecCccHHHH
Q ss_pred ccccCC--CceEEEeCCCC----eeeehhhhhhcccCCCceEEEEc--CCHHHHHHHHHHhhcccCeEEE
Q 017962 89 QPADGQ--AENIVIDLPDW----QVIPAENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGGIVL 150 (363)
Q Consensus 89 ~~~~~~--~~~vvv~~~dW----~iIPlEnliA~~q~~~~~l~a~v--~~~~eA~~~~~~LE~G~dGVvl 150 (363)
+..+.. ++.+++...+= +=+.+|-+-.-.+..+..+++.= .|.+|++.++...+.|+|||++
T Consensus 152 ~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~i 221 (241)
T PRK14024 152 LERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIV 221 (241)
T ss_pred HHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEE
No 198
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=38.35 E-value=1.9e+02 Score=30.45 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=44.8
Q ss_pred EEEEEecChhhhhhhccccCCCceEEEeCCCCeeeehhh--hhh--cccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 017962 74 GSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAEN--IVA--SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 149 (363)
Q Consensus 74 ~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEn--liA--~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVv 149 (363)
..+.+.++++-++++-. .+++.+++...|. -+| ++. .....+.++++.++|.++.+.. .+.|+|-|+
T Consensus 463 ~i~GD~~~~~~L~~a~i--~~a~~viv~~~~~----~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l---~~~Gad~vv 533 (558)
T PRK10669 463 AVLGNAANEEIMQLAHL--DCARWLLLTIPNG----YEAGEIVASAREKRPDIEIIARAHYDDEVAYI---TERGANQVV 533 (558)
T ss_pred EEEcCCCCHHHHHhcCc--cccCEEEEEcCCh----HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHH---HHcCCCEEE
Confidence 34556677766655443 3678888765554 233 221 1123456899999999888876 468999888
Q ss_pred EecC
Q 017962 150 LKVE 153 (363)
Q Consensus 150 l~~~ 153 (363)
.+..
T Consensus 534 ~p~~ 537 (558)
T PRK10669 534 MGER 537 (558)
T ss_pred ChHH
Confidence 4443
No 199
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=38.31 E-value=27 Score=35.77 Aligned_cols=78 Identities=32% Similarity=0.416 Sum_probs=50.7
Q ss_pred eeeeeccCCCeEEEEc-----CCCCeeEEeeeeEEEeccceeEEEEEecCCCCeE--EEEEeEecceE--EEecCCCCCC
Q 017962 254 CYLSELKSGKEVIVVD-----QKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTL--YGIILQNAETV--ALVSPCKGTG 324 (363)
Q Consensus 254 ~YLSEL~sG~eVLvVd-----~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~--~sviLQnAETI--rLv~p~~~~~ 324 (363)
+-...|.+||+|.+ | +.|+. .+||-- +|-|+||.+|+. +..- -.-|=-||-.| .+..|+
T Consensus 205 t~ieplG~gDRVCV-DTcsLm~~gEG--MLVGs~---s~gmFlVhsEs~--espYVAaRPFRVNAG~VhaYi~vPg---- 272 (376)
T COG1465 205 TEIEPLGSGDRVCV-DTCSLMTRGEG--MLVGSQ---SRGMFLVHSESE--ESPYVAARPFRVNAGAVHAYIRVPG---- 272 (376)
T ss_pred EEEeecCCCceEEE-eeecccccCCc--eEeecc---cCcEEEEecccc--cCcccccCceeecccceeEEEEcCC----
Confidence 44667888999854 3 23333 677765 689999999874 2211 12344565543 345566
Q ss_pred CCCceeeeeecCCCCEEEEEe
Q 017962 325 EQEKAIPVTSLKVGDEVLLRV 345 (363)
Q Consensus 325 ~~g~~vsVt~Lk~GD~VL~~~ 345 (363)
++.-=..+||+||+|++.-
T Consensus 273 --~kTkYLaEL~aGDeV~iVD 291 (376)
T COG1465 273 --GKTKYLAELKAGDEVLIVD 291 (376)
T ss_pred --CceEEhhhhcCCCeEEEEe
Confidence 4556789999999999874
No 200
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=38.28 E-value=1.9e+02 Score=25.88 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=34.1
Q ss_pred CCceeEEEe-c-CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEec-cceeEEEE
Q 017962 240 GPVHAYVLV-P-GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIES-RPLILVEA 294 (363)
Q Consensus 240 GaVHaYv~~-p-ggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~-RPLllIeA 294 (363)
|-+.=+|.. | |.-|+||..++.||+|.+-...|..... .-.. +|+++|=+
T Consensus 60 ~~~~~~v~~~~~G~~s~~l~~~~~G~~v~i~gP~G~~~~~-----~~~~~~~~vliag 112 (234)
T cd06183 60 GYFDLLIKIYPGGKMSQYLHSLKPGDTVEIRGPFGKFEYK-----PNGKVKHIGMIAG 112 (234)
T ss_pred CEEEEEEEECCCCcchhHHhcCCCCCEEEEECCccceeec-----CCCCccEEEEEcC
Confidence 445566665 4 5569999999999999998888864221 0112 78887744
No 201
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=38.13 E-value=44 Score=31.19 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=26.0
Q ss_pred ceeeeeec-cCCCeEEEEcCCC-CeeEEeeeeEEEeccceeEEEE
Q 017962 252 KTCYLSEL-KSGKEVIVVDQKG-RQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 252 kT~YLSEL-~sG~eVLvVd~~G-~~R~~~VGRvKIE~RPLllIeA 294 (363)
-|.||.++ +.||+|.+.-..| .... -+ +.+|++||=+
T Consensus 79 ~S~~L~~~~~~Gd~v~i~gp~gg~F~~-----~~-~~~~~vlIAg 117 (245)
T cd06200 79 GSGWLTRHAPIGASVALRLRENPGFHL-----PD-DGRPLILIGN 117 (245)
T ss_pred echhhhhCCCCCCEEEEEecCCCcccC-----CC-CCCCEEEEec
Confidence 78999875 8999999987544 3321 12 4689998854
No 202
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=38.11 E-value=35 Score=35.06 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=42.4
Q ss_pred ChhhhhhhccccCC---CceEEEeCC-CCeeeehhhhhhcccCC--CceEEEE-cCCHHHHHHHHHHhhcccCeEEEe
Q 017962 81 TPQELQQLQPADGQ---AENIVIDLP-DWQVIPAENIVASFQGS--GKTVFAI-SKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 81 ~~e~~e~~~~~~~~---~~~vvv~~~-dW~iIPlEnliA~~q~~--~~~l~a~-v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
.+++.+++..+... .|+++|+.. +...- .-+.|+.+... +..|++. +-++++|+.+ ++.|+|||.+.
T Consensus 105 ~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~-~i~~ik~ir~~~p~~~viaGNV~T~e~a~~L---i~aGAD~ikVg 178 (343)
T TIGR01305 105 SDNDLEKMTSILEAVPQLKFICLDVANGYSEH-FVEFVKLVREAFPEHTIMAGNVVTGEMVEEL---ILSGADIVKVG 178 (343)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHH-HHHHHHHHHhhCCCCeEEEecccCHHHHHHH---HHcCCCEEEEc
Confidence 56677777766644 799999866 33322 22233333222 3467777 8888888755 45799999865
No 203
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=37.97 E-value=15 Score=35.86 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=19.1
Q ss_pred CchhHHHHHHHhCccEEEEcccc
Q 017962 20 ESKQVMTAAVERGWNTFVFLSEN 42 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~~ 42 (363)
+..+++..|-+.|+..+++...+
T Consensus 18 d~~~vi~~a~~~gv~~~~~~g~~ 40 (256)
T COG0084 18 DRDEVIARAREAGVKKMVVVGTD 40 (256)
T ss_pred CHHHHHHHHHHcCCcEEEEeecC
Confidence 45789999999999998887654
No 204
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=37.95 E-value=41 Score=34.01 Aligned_cols=41 Identities=20% Similarity=0.410 Sum_probs=31.2
Q ss_pred ec-CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 248 VP-GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 248 ~p-ggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
.| |.-|.||.+|+.||+|.+-...|+.-.. . +.||++||=+
T Consensus 237 ~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~-----~-~~~~lvlIAg 278 (405)
T TIGR01941 237 IPPGIMSSYIFSLKPGDKVTISGPFGEFFAK-----D-TDAEMVFIGG 278 (405)
T ss_pred CCCCcHHHHHhcCCCcCEEEEEeccCCCeec-----C-CCCCEEEEec
Confidence 35 4457999999999999999999986321 1 3589888754
No 205
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=37.95 E-value=1.5e+02 Score=30.35 Aligned_cols=50 Identities=26% Similarity=0.276 Sum_probs=39.9
Q ss_pred ceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 242 VHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 242 VHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
.+...+.|+||+-|.+-+..-..|.+||..-+ .+++.+.+-..++++.-.
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~---kvv~ei~vp~~~~vy~t~ 156 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK---AFVRMMDVPDCYHIFPTA 156 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCC---cEEEEEeCCCCcEEEEec
Confidence 35677889999999999999999999998554 356677776777777753
No 206
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=37.92 E-value=2.6e+02 Score=26.84 Aligned_cols=131 Identities=16% Similarity=0.061 Sum_probs=67.4
Q ss_pred EEEE--eCchhHHHHHHHhCccEEEEcc---cchhhhhhcccee-eeeeeee--cCCccccCCCCeeEEEEEecChhhhh
Q 017962 15 VWIW--TESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTIA-LLDPLFI--KEGEVYDSGDRRVGSIIEVSTPQELQ 86 (363)
Q Consensus 15 vWvw--~~~K~~vt~AlEsG~~~~v~~~---~~~~~~~~~~~i~-~i~~l~~--~~g~~~~~~gk~v~~~~~v~~~e~~e 86 (363)
+|+= -++.+-+...|+.|++.+++.. ++.++.+++.+.+ .+ .+.+ ++|+.+..... +-++..-++
T Consensus 76 v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~i-vvslD~k~g~v~~~gw~------~~~~~~~~e 148 (241)
T PRK14114 76 IQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEP-VFSLDTRGGKVAFKGWL------AEEEIDPVS 148 (241)
T ss_pred EEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCE-EEEEEccCCEEeeCCCe------ecCCCCHHH
Confidence 5553 2678999999999999999887 4556666654321 11 1222 33432211111 112111112
Q ss_pred hhccccC-CCceEEEeC--CC--CeeeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHH--hhcc-cCeEEEec
Q 017962 87 QLQPADG-QAENIVIDL--PD--WQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEA--LEQG-LGGIVLKV 152 (363)
Q Consensus 87 ~~~~~~~-~~~~vvv~~--~d--W~iIPlEnliA~~q~~~~~l~a--~v~~~~eA~~~~~~--LE~G-~dGVvl~~ 152 (363)
.+..... .+..+|+.. +| .+=+.+|.+-.-.+..+..|+| .++|.+|-+.++.. +..| ++|+++-.
T Consensus 149 ~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~ 224 (241)
T PRK14114 149 LLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGR 224 (241)
T ss_pred HHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEeh
Confidence 2222111 245555542 11 2223444432222223446665 58999998877653 2457 99999854
No 207
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=37.64 E-value=11 Score=37.16 Aligned_cols=14 Identities=36% Similarity=0.816 Sum_probs=12.0
Q ss_pred eEEEeecCCCCCCc
Q 017962 193 RVCVDLCSLMRPGE 206 (363)
Q Consensus 193 RVCVDtcsll~~GE 206 (363)
+||+|||..|..|=
T Consensus 175 gVClDTCH~FaaGy 188 (281)
T KOG3997|consen 175 GVCLDTCHTFAAGY 188 (281)
T ss_pred eeeHhhhhhhcccc
Confidence 59999999998763
No 208
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.50 E-value=1.9e+02 Score=27.46 Aligned_cols=78 Identities=26% Similarity=0.210 Sum_probs=52.9
Q ss_pred EEecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC--
Q 017962 77 IEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED-- 154 (363)
Q Consensus 77 ~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d-- 154 (363)
..|.++++.+.+.. ..+++++.-..+- .++...+..+--++-.+.|+.| +..+++.|+|-|-|-|.+
T Consensus 72 GTVl~~~~a~~a~~--aGA~FivsP~~~~------~vi~~a~~~~i~~iPG~~TptE---i~~a~~~Ga~~vKlFPa~~~ 140 (212)
T PRK05718 72 GTVLNPEQLAQAIE--AGAQFIVSPGLTP------PLLKAAQEGPIPLIPGVSTPSE---LMLGMELGLRTFKFFPAEAS 140 (212)
T ss_pred eeccCHHHHHHHHH--cCCCEEECCCCCH------HHHHHHHHcCCCEeCCCCCHHH---HHHHHHCCCCEEEEccchhc
Confidence 46788877555443 2567777654442 4555555566667779999999 456889999999998865
Q ss_pred --HHHHHHHHHhh
Q 017962 155 --VKAVLALKEYF 165 (363)
Q Consensus 155 --~~ei~~l~~~~ 165 (363)
++-++.|+..+
T Consensus 141 gg~~~lk~l~~p~ 153 (212)
T PRK05718 141 GGVKMLKALAGPF 153 (212)
T ss_pred cCHHHHHHHhccC
Confidence 45555555554
No 209
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=37.45 E-value=60 Score=30.70 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=29.6
Q ss_pred hhhhhcccCCCceEEEE-----cCCHHHHHHHHHHhhcccCeEEEecCCHHHH
Q 017962 111 ENIVASFQGSGKTVFAI-----SKTPSEAQIFLEALEQGLGGIVLKVEDVKAV 158 (363)
Q Consensus 111 EnliA~~q~~~~~l~a~-----v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei 158 (363)
+.+|..++..+-.+++- +++.++++.+ ++.|+|||+ ||.|+.+
T Consensus 213 ~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~l---~~~Gvdgii--TD~p~~~ 260 (265)
T cd08564 213 EEFVKKAHENGLKVMTYFDEPVNDNEEDYKVY---LELGVDCIC--PNDPVLL 260 (265)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCCCHHHHHHH---HHcCCCEEE--cCCHHHH
Confidence 46667777677777766 4566666664 477999976 6777754
No 210
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=37.20 E-value=34 Score=32.49 Aligned_cols=103 Identities=21% Similarity=0.252 Sum_probs=64.6
Q ss_pred EEEEEEEEEcCCcc-eEEEeecCC---CCCCceEEEeccCceEEEEeeccccCCC-CCCCCeeeecCCceeEEEecCCce
Q 017962 179 KATVTRVDVAGMGD-RVCVDLCSL---MRPGEGLLVGSFARGLFLVHSECLESNY-IASRPFRVNAGPVHAYVLVPGGKT 253 (363)
Q Consensus 179 ~atVt~V~~vGmGd-RVCVDtcsl---l~~GEGmLVGs~s~glfLVhsEt~e~~Y-va~RPFRVNAGaVHaYv~~pggkT 253 (363)
..+|++++.+-... +..+..=.. +.||+ ++.|.-.+-.+.|| +++-|.+-+-...|=.+..-|-.|
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQ---------fv~l~~~~~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T 79 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVALTFKPGQ---------FVMLRVPGGVRRPYSLASAPDDKGELELHIRVYEVGKVT 79 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccccccCCCc---------EEEEEeCCCcEEEeeeccCCCcCCcEEEEEEEEeCChHH
Confidence 47777777764332 344544443 67776 44444444445555 445554422225676666677789
Q ss_pred eeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEE
Q 017962 254 CYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 295 (363)
Q Consensus 254 ~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe 295 (363)
+|+++|+.||.|-+...-|+.-... + -.+|+++|=+-
T Consensus 80 ~~i~~~k~gd~i~v~GP~G~~~~~~----~-~~~~vlliagG 116 (252)
T COG0543 80 KYIFGLKEGDKIRVRGPLGNGFLRE----K-IGKPVLLIAGG 116 (252)
T ss_pred HHHhhccCCCEEEEEcCCCCCcccc----c-cCCcEEEEecc
Confidence 9999999999999999999875542 1 24456666543
No 211
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=37.05 E-value=2.5e+02 Score=26.41 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=58.3
Q ss_pred eeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEEeCCCC----eeeehhhhhhcc-cCCCceEE--EE
Q 017962 55 LDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW----QVIPAENIVASF-QGSGKTVF--AI 127 (363)
Q Consensus 55 i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW----~iIPlEnliA~~-q~~~~~l~--a~ 127 (363)
|..|.+.+|..+..... .......++.++-+..... .++.+.+...|= +-..++.+ .++ +..+..++ ..
T Consensus 7 ip~idl~~g~~V~~~~~--~~~~~~~d~~~~a~~~~~~-G~~~i~i~dl~~~~~~~~~~~~~i-~~i~~~~~ipv~~~GG 82 (253)
T PRK02083 7 IPCLDVKDGRVVKGVNF--VNLRDAGDPVELAKRYNEE-GADELVFLDITASSEGRDTMLDVV-ERVAEQVFIPLTVGGG 82 (253)
T ss_pred EEEEEEECCEEEEeEEe--cceeecCCHHHHHHHHHHc-CCCEEEEEeCCcccccCcchHHHH-HHHHHhCCCCEEeeCC
Confidence 44466777766553221 1112344666666655444 356666655432 22333333 222 22223344 47
Q ss_pred cCCHHHHHHHHHHhhcccCeEEEec---CCHHHHHHHHHhh
Q 017962 128 SKTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKEYF 165 (363)
Q Consensus 128 v~~~~eA~~~~~~LE~G~dGVvl~~---~d~~ei~~l~~~~ 165 (363)
++|.++++.++. .|+|+|++.+ .||+.+.++.+.+
T Consensus 83 i~s~~~~~~~l~---~Ga~~Viigt~~l~~p~~~~ei~~~~ 120 (253)
T PRK02083 83 IRSVEDARRLLR---AGADKVSINSAAVANPELISEAADRF 120 (253)
T ss_pred CCCHHHHHHHHH---cCCCEEEEChhHhhCcHHHHHHHHHc
Confidence 889999988876 6999999999 5666665555443
No 212
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=36.90 E-value=1.8e+02 Score=26.35 Aligned_cols=59 Identities=22% Similarity=0.357 Sum_probs=37.9
Q ss_pred CCCCeeeecCCc-e----eEEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 231 ASRPFRVNAGPV-H----AYVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 231 a~RPFRVNAGaV-H----aYv~~-pgg-kT~YLSE-L~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
..|||-+..-|. . =++.. |+| -|.||.. ++.||+|.+....|+... - .-..+|+++|=+
T Consensus 50 ~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l---~--~~~~~~~vliag 116 (236)
T cd06210 50 TRRSYSLANTPNWDGRLEFLIRLLPGGAFSTYLETRAKVGQRLNLRGPLGAFGL---R--ENGLRPRWFVAG 116 (236)
T ss_pred cceecccCCCCCCCCEEEEEEEEcCCCccchhhhhCcCCCCEEEEecCcceeee---c--CCCCccEEEEcc
Confidence 357777754442 1 12332 444 6899987 999999999999997521 1 123478887754
No 213
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=36.81 E-value=2.8e+02 Score=26.22 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=61.5
Q ss_pred CchhHHHHHHHhCccEEEEccc---chhhhhhccce----eeeeeeeecCCccccCCCCeeEEEEEec-Chhhhhhhccc
Q 017962 20 ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTI----ALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPA 91 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~---~~~~~~~~~~i----~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~ 91 (363)
.+.+-+..+++.|++.+++... +.++.+++.+- ..+--|-+.+|.+.....-.+.+..-.. +.++...++..
T Consensus 84 ~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~ 163 (254)
T TIGR00735 84 KSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKE 163 (254)
T ss_pred CCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHH
Confidence 5788899999999999998763 34455554322 1121122233332211111222111111 22333333332
Q ss_pred c--CCCceEEEeCC---------CCeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcc-cCeEEEec
Q 017962 92 D--GQAENIVIDLP---------DWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQG-LGGIVLKV 152 (363)
Q Consensus 92 ~--~~~~~vvv~~~---------dW~iIPlEnliA~~q~~~~~l~a~--v~~~~eA~~~~~~LE~G-~dGVvl~~ 152 (363)
+ ..++.+++... ||.. +..+... .+..+++. +.++++++ ++++.| +|||++.+
T Consensus 164 l~~~G~~~iivt~i~~~g~~~g~~~~~--~~~i~~~---~~ipvia~GGi~s~~di~---~~~~~g~~dgv~~g~ 230 (254)
T TIGR00735 164 VEKLGAGEILLTSMDKDGTKSGYDLEL--TKAVSEA---VKIPVIASGGAGKPEHFY---EAFTKGKADAALAAS 230 (254)
T ss_pred HHHcCCCEEEEeCcCcccCCCCCCHHH--HHHHHHh---CCCCEEEeCCCCCHHHHH---HHHHcCCcceeeEhH
Confidence 2 23677777432 2321 2223322 23455543 67888877 455657 99998844
No 214
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=36.65 E-value=64 Score=28.81 Aligned_cols=36 Identities=33% Similarity=0.317 Sum_probs=25.1
Q ss_pred eeEEEecCCceeeee--eccCCCeEEEEcCCCCeeEEeee
Q 017962 243 HAYVLVPGGKTCYLS--ELKSGKEVIVVDQKGRQRTAVVG 280 (363)
Q Consensus 243 HaYv~~pggkT~YLS--EL~sG~eVLvVd~~G~~R~~~VG 280 (363)
|.++..-|..-++.+ ++.+||+|.+|+.+|.+ ..|-
T Consensus 101 ~g~Vkv~g~~Wra~~~~~l~~G~~V~Vv~v~G~~--L~V~ 138 (140)
T COG1585 101 RGRVKVEGESWRARSDEDLPAGDRVEVVGVEGAT--LVVR 138 (140)
T ss_pred eEEEEECCeEeEEecCCCCCCCCEEEEEEeeCCE--EEEE
Confidence 345555555555544 78899999999999984 4443
No 215
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=36.37 E-value=56 Score=34.78 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=43.3
Q ss_pred ChhhhhhhccccC-CCceEEEeCCCCeeeehhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 81 TPQELQQLQPADG-QAENIVIDLPDWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 81 ~~e~~e~~~~~~~-~~~~vvv~~~dW~iIPlEnliA~~q~~--~~~l~a-~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
++++.+++..+.. .+|.|+++..+=.-+=.-++|..+... +..|++ .+.+.++|+.+. +.|+|+|.+.
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~---~aGaD~i~vg 317 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLI---QAGVDGLRVG 317 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHH---HcCcCEEEEC
Confidence 3566666655543 589999988742222222444444432 346655 699999988766 5899999873
No 216
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=36.34 E-value=1.4e+02 Score=27.46 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=38.8
Q ss_pred cChhhhhhhcccc--CCCceEEEeCC-CCeeeehhhhhhcccCCCceEEEEc----CCHHHH-HHHHHHhhcccCeEEE-
Q 017962 80 STPQELQQLQPAD--GQAENIVIDLP-DWQVIPAENIVASFQGSGKTVFAIS----KTPSEA-QIFLEALEQGLGGIVL- 150 (363)
Q Consensus 80 ~~~e~~e~~~~~~--~~~~~vvv~~~-dW~iIPlEnliA~~q~~~~~l~a~v----~~~~eA-~~~~~~LE~G~dGVvl- 150 (363)
.+++++++.+... ..+|++-+.+. |++. ++.+++.. +..+++.- .|.+++ +.+-++++.|++||.+
T Consensus 140 ~~~~~i~~~~~~a~~~GaD~Ik~~~~~~~~~--~~~i~~~~---~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 140 KDPDLIAYAARIGAELGADIVKTKYTGDAES--FKEVVEGC---PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred cCHHHHHHHHHHHHHHCCCEEEecCCCCHHH--HHHHHhcC---CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 3456666532222 35788887532 1111 34444433 33355532 344443 3456788999999985
Q ss_pred ----ecCCHHH
Q 017962 151 ----KVEDVKA 157 (363)
Q Consensus 151 ----~~~d~~e 157 (363)
..+||.+
T Consensus 215 ~~i~~~~dp~~ 225 (235)
T cd00958 215 RNIFQRPDPVA 225 (235)
T ss_pred hhhhcCCCHHH
Confidence 4456543
No 217
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=35.94 E-value=72 Score=27.76 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.9
Q ss_pred EEEEEecCCCCeEEEEEeEe
Q 017962 291 LVEAKTNSGDQTLYGIILQN 310 (363)
Q Consensus 291 lIeAe~~~~~g~~~sviLQn 310 (363)
.+|++.+.+-|....+||||
T Consensus 5 VlEvk~~~G~G~t~dvIl~~ 24 (110)
T cd03703 5 VLEVKEEEGLGTTIDVILYD 24 (110)
T ss_pred EEEEEEcCCCceEEEEEEEC
Confidence 57888877778999999997
No 218
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=35.92 E-value=71 Score=21.04 Aligned_cols=37 Identities=22% Similarity=0.500 Sum_probs=26.3
Q ss_pred cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccce
Q 017962 249 PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 289 (363)
Q Consensus 249 pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPL 289 (363)
|+|+.-|.+.- .++.|.++|.... .+++++++-..|-
T Consensus 1 pd~~~lyv~~~-~~~~v~~id~~~~---~~~~~i~vg~~P~ 37 (42)
T TIGR02276 1 PDGTKLYVTNS-GSNTVSVIDTATN---KVIATIPVGGYPF 37 (42)
T ss_pred CCCCEEEEEeC-CCCEEEEEECCCC---eEEEEEECCCCCc
Confidence 67888888774 4678888997432 4667777766664
No 219
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=35.67 E-value=33 Score=34.01 Aligned_cols=39 Identities=31% Similarity=0.296 Sum_probs=26.8
Q ss_pred hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 110 AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 110 lEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
|+.|++.+ +-..-+=|...++++| ..++|.|+|+||+.|
T Consensus 174 l~iiie~a-~VPviVDAGiG~pSdA---a~aMElG~DaVL~NT 212 (262)
T COG2022 174 LEIIIEEA-DVPVIVDAGIGTPSDA---AQAMELGADAVLLNT 212 (262)
T ss_pred HHHHHHhC-CCCEEEeCCCCChhHH---HHHHhcccceeehhh
Confidence 45566655 2333344667788876 467899999999986
No 220
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=35.65 E-value=46 Score=33.69 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=30.7
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 250 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 250 ggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
|.-|.||.+|+.||+|.+-...|+.-.. . ..+|++||=+
T Consensus 244 G~~S~~L~~l~~Gd~v~v~gP~G~f~~~-----~-~~~~ivlIAg 282 (409)
T PRK05464 244 GIMSSYIFSLKPGDKVTISGPFGEFFAK-----D-TDAEMVFIGG 282 (409)
T ss_pred CchhhHHHhCCCCCEEEEEccccCcEec-----C-CCceEEEEEe
Confidence 4558899999999999999999987321 1 4688888854
No 221
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=35.64 E-value=2.9e+02 Score=27.08 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=60.3
Q ss_pred chhHHHHHHHhCccEEEEcccc--hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceE
Q 017962 21 SKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 98 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~--~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 98 (363)
+.-.+-.|-..|+|+++.--.- .+..+++-+.+. .-|- -++++|.+.++++.+... .++.+
T Consensus 120 d~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~-------------~lGl--e~lVEVh~~~El~~al~~--~a~ii 182 (254)
T PF00218_consen 120 DPYQIYEARAAGADAVLLIAAILSDDQLEELLELAH-------------SLGL--EALVEVHNEEELERALEA--GADII 182 (254)
T ss_dssp SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHH-------------HTT---EEEEEESSHHHHHHHHHT--T-SEE
T ss_pred CHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHH-------------HcCC--CeEEEECCHHHHHHHHHc--CCCEE
Confidence 4566778899999998764321 111111111111 1132 267899999998886632 56778
Q ss_pred EEeCCCCee--eeh---hhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 017962 99 VIDLPDWQV--IPA---ENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 99 vv~~~dW~i--IPl---EnliA~~q~~~~~l~a~--v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
-|+-+|-+- +.+ +.|...+.. +.-++++ +++.+|++.+ .+.|+||||+-+
T Consensus 183 GINnRdL~tf~vd~~~~~~l~~~ip~-~~~~iseSGI~~~~d~~~l---~~~G~davLVGe 239 (254)
T PF00218_consen 183 GINNRDLKTFEVDLNRTEELAPLIPK-DVIVISESGIKTPEDARRL---ARAGADAVLVGE 239 (254)
T ss_dssp EEESBCTTTCCBHTHHHHHHHCHSHT-TSEEEEESS-SSHHHHHHH---CTTT-SEEEESH
T ss_pred EEeCccccCcccChHHHHHHHhhCcc-ceeEEeecCCCCHHHHHHH---HHCCCCEEEECH
Confidence 888765432 222 233333332 2334443 4566776654 588999999753
No 222
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=35.55 E-value=92 Score=30.46 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=34.1
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
..|...+.|.+||..+ ++.|+|.|.|.+=++.+++++.+.+
T Consensus 184 ~~IgVev~t~eea~~A---~~~gaD~I~ld~~~p~~l~~~~~~~ 224 (272)
T cd01573 184 KKIVVEVDSLEEALAA---AEAGADILQLDKFSPEELAELVPKL 224 (272)
T ss_pred CeEEEEcCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHH
Confidence 4688999999998776 4799999999999998887666655
No 223
>COG0684 MenG Demethylmenaquinone methyltransferase [Coenzyme metabolism]
Probab=35.55 E-value=27 Score=33.43 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=25.1
Q ss_pred eeeeccCCCeEEEEcCCCCeeEEeeeeE
Q 017962 255 YLSELKSGKEVIVVDQKGRQRTAVVGRV 282 (363)
Q Consensus 255 YLSEL~sG~eVLvVd~~G~~R~~~VGRv 282 (363)
+|++-..|| ||++|..|..+.+++|-.
T Consensus 64 al~~~~~Gd-VLVid~~g~~~~A~~Gd~ 90 (210)
T COG0684 64 ALEQAGPGD-VLVIDGGGDLRRALWGDL 90 (210)
T ss_pred eeecCCCCC-EEEEeCCCCcceeehHHH
Confidence 899999999 999999999999999964
No 224
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=35.36 E-value=1.7e+02 Score=24.95 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=39.1
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 162 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~--~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~ 162 (363)
..+.++++..-...-.+ .++..++. ....++... ...+......+++.|+++.+.+|-+++++.+..
T Consensus 44 ~~d~illd~~~~~~~g~-~~~~~l~~~~~~~pii~ls-~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i 112 (222)
T PRK10643 44 HYSLVVLDLGLPDEDGL-HLLRRWRQKKYTLPVLILT-ARDTLEDRVAGLDVGADDYLVKPFALEELHARI 112 (222)
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHhcCCCCcEEEEE-CCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHH
Confidence 35667774332221112 23333332 233455443 344556678889999999999999998875543
No 225
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=35.07 E-value=4.4e+02 Score=25.74 Aligned_cols=128 Identities=14% Similarity=0.221 Sum_probs=64.5
Q ss_pred EEEe--CchhHHHHHHHhCccEEEEcccch------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecCh-----
Q 017962 16 WIWT--ESKQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTP----- 82 (363)
Q Consensus 16 Wvw~--~~K~~vt~AlEsG~~~~v~~~~~~------~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~----- 82 (363)
|++. .+.+.+..|..+|+|.++++-||. +.+++ .+ +..+ . .....+.. .++.|.+.
T Consensus 6 ~LfvP~~~~~~~~ka~~~gaD~vilDLEDav~~~~k~~AR~--~v--~~~l--~---~~~~~~~~--~~VRIn~~~~~~~ 74 (288)
T TIGR01588 6 MMFVPGNNPAMISDAFIYGADSVMFDLEDAVSLAEKDSARL--LV--YEAL--Q---TPDYGDTE--TVVRINGLDTPFG 74 (288)
T ss_pred eeecCCCCHHHHHhhhhcCCCEEEEecccCCCcchHHHHHH--HH--HHHH--h---ccCCCCCE--EEEEECCCCChhH
Confidence 4544 478889999999999999997762 22111 01 0000 0 01112333 34455532
Q ss_pred -hhhhhhccccCCCceEEEeCC-C-Ceeeehhhhhhcc------cCCCceEEEEcCCHHHHHHHHHHhh--cccCeEEEe
Q 017962 83 -QELQQLQPADGQAENIVIDLP-D-WQVIPAENIVASF------QGSGKTVFAISKTPSEAQIFLEALE--QGLGGIVLK 151 (363)
Q Consensus 83 -e~~e~~~~~~~~~~~vvv~~~-d-W~iIPlEnliA~~------q~~~~~l~a~v~~~~eA~~~~~~LE--~G~dGVvl~ 151 (363)
.|+..+.. ...+.+++--- + .++-=+..++..+ ....+.+++.+.|++-..-+-+++. -|++|+.+-
T Consensus 75 ~~di~~~l~--~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~~G 152 (288)
T TIGR01588 75 LADIKAVVK--AGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIALG 152 (288)
T ss_pred HHHHHHHHh--cCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEEeC
Confidence 33333322 22445555111 1 0111111111111 1124567888888877777777773 478888887
Q ss_pred cCCHH
Q 017962 152 VEDVK 156 (363)
Q Consensus 152 ~~d~~ 156 (363)
+.|..
T Consensus 153 ~~Dls 157 (288)
T TIGR01588 153 AEDYV 157 (288)
T ss_pred HHHHH
Confidence 77654
No 226
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=34.90 E-value=4.9e+02 Score=26.68 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=46.2
Q ss_pred CeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCe-EEEEEeEecc
Q 017962 234 PFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQT-LYGIILQNAE 312 (363)
Q Consensus 234 PFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~-~~sviLQnAE 312 (363)
|+++++..=+.||+|= ++. +=+-+..|++|-++|..-+. .+.|++++.+|.=+. . +.+|+ .+=+.-+.+.
T Consensus 252 ~ia~~~dg~~lyV~~~-~~~-~~thk~~~~~V~ViD~~t~k---vi~~i~vG~~~~~ia-v---S~Dgkp~lyvtn~~s~ 322 (352)
T TIGR02658 252 QVAYHRARDRIYLLAD-QRA-KWTHKTASRFLFVVDAKTGK---RLRKIELGHEIDSIN-V---SQDAKPLLYALSTGDK 322 (352)
T ss_pred eEEEcCCCCEEEEEec-CCc-cccccCCCCEEEEEECCCCe---EEEEEeCCCceeeEE-E---CCCCCeEEEEeCCCCC
Confidence 3566655556666442 111 12345577999999985554 456888888875443 2 23667 5444555566
Q ss_pred eEEEecCC
Q 017962 313 TVALVSPC 320 (363)
Q Consensus 313 TIrLv~p~ 320 (363)
+|-++...
T Consensus 323 ~VsViD~~ 330 (352)
T TIGR02658 323 TLYIFDAE 330 (352)
T ss_pred cEEEEECc
Confidence 66666554
No 227
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=34.83 E-value=93 Score=30.57 Aligned_cols=150 Identities=12% Similarity=0.104 Sum_probs=82.7
Q ss_pred EEEEeC---chhHHHHHHHhCccEEEEcccc------hhhhhhccceeeee--eeeecCCccccCCCCeeEEEEEecChh
Q 017962 15 VWIWTE---SKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKEGEVYDSGDRRVGSIIEVSTPQ 83 (363)
Q Consensus 15 vWvw~~---~K~~vt~AlEsG~~~~v~~~~~------~~~~~~~~~i~~i~--~l~~~~g~~~~~~gk~v~~~~~v~~~e 83 (363)
|.+--+ +.+.+..|++.|++.++++.-+ .++.+++-.++.-. .+-.+=|.+-..++..++.-...+++|
T Consensus 77 v~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~e 156 (282)
T TIGR01859 77 VALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPD 156 (282)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHH
Confidence 566433 7899999999999999998643 22223322221110 111111110001111111012367898
Q ss_pred hhhhhccccCCCceEEEe-------CCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH-
Q 017962 84 ELQQLQPADGQAENIVID-------LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV- 155 (363)
Q Consensus 84 ~~e~~~~~~~~~~~vvv~-------~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~- 155 (363)
+..++.... .+|++.+. +.....+.+|.|-.--+..+.-|++.=.|--....+-.+.+.|+++|=+.|+=-
T Consensus 157 ea~~f~~~t-gvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~ 235 (282)
T TIGR01859 157 EAEQFVKET-GVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRI 235 (282)
T ss_pred HHHHHHHHH-CcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHH
Confidence 877776544 57888863 233455666665332222244566666444444556778889999999999852
Q ss_pred HHHHHHHHhh
Q 017962 156 KAVLALKEYF 165 (363)
Q Consensus 156 ~ei~~l~~~~ 165 (363)
.-...+++++
T Consensus 236 a~~~~~~~~~ 245 (282)
T TIGR01859 236 AFTAAIRKVL 245 (282)
T ss_pred HHHHHHHHHH
Confidence 3444555555
No 228
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=34.82 E-value=3.5e+02 Score=27.74 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=15.1
Q ss_pred EEEEEEEE-------EcCCcceEEEee
Q 017962 179 KATVTRVD-------VAGMGDRVCVDL 198 (363)
Q Consensus 179 ~atVt~V~-------~vGmGdRVCVDt 198 (363)
.++|.+|+ .+--||||++-+
T Consensus 271 ~~~VksI~~~~~~~~~a~~G~~v~i~l 297 (411)
T PRK04000 271 TTKIVSLRAGGEKVEEARPGGLVGVGT 297 (411)
T ss_pred eEEEeEEEECCEECCEEcCCCEEEEEe
Confidence 46777777 456899999865
No 229
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=34.72 E-value=1.8e+02 Score=25.76 Aligned_cols=104 Identities=18% Similarity=0.117 Sum_probs=55.1
Q ss_pred hhHHHHHHHhCccEEEEcccc---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceE
Q 017962 22 KQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 98 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~---~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 98 (363)
-+.+..|+++|++.+.++..+ .+..+...++..+. +..| ..+-+.+.- .++... .++-+
T Consensus 16 ~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~----------~~~~----~~l~i~~~~---~la~~~-g~~Gv 77 (196)
T TIGR00693 16 LNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELC----------RRYG----VPFIVNDRV---DLALAL-GADGV 77 (196)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHH----------HHhC----CeEEEECHH---HHHHHc-CCCEE
Confidence 357788999999998887532 22222222221111 0011 111233321 122222 34555
Q ss_pred EEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017962 99 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 150 (363)
Q Consensus 99 vv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl 150 (363)
.+...+ ++.+.+-..+ +....|-..+.+.+|+. ++++.|+|=|.+
T Consensus 78 Hl~~~~---~~~~~~r~~~-~~~~~ig~s~h~~~e~~---~a~~~g~dyi~~ 122 (196)
T TIGR00693 78 HLGQDD---LPASEARALL-GPDKIIGVSTHNLEELA---EAEAEGADYIGF 122 (196)
T ss_pred ecCccc---CCHHHHHHhc-CCCCEEEEeCCCHHHHH---HHhHcCCCEEEE
Confidence 554333 3444443322 23457888899998875 477899999986
No 230
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=34.60 E-value=42 Score=33.71 Aligned_cols=41 Identities=32% Similarity=0.485 Sum_probs=27.3
Q ss_pred cCCceeeeeeccCCCeEEEE--cCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 249 PGGKTCYLSELKSGKEVIVV--DQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 249 pggkT~YLSEL~sG~eVLvV--d~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
.|--|.||+.|+.||.|.+- ...|..+.- .-..+|+++|=+
T Consensus 196 ~G~~S~~L~~l~~Gd~v~v~i~~p~g~F~l~-----~~~~~piImIa~ 238 (384)
T cd06206 196 RGVASSYLSSLRPGDSIHVSVRPSHSAFRPP-----SDPSTPLIMIAA 238 (384)
T ss_pred eeehHHHHhhCCCCCeEEEEEecCCCccCCC-----CCCCCCEEEEeC
Confidence 35578999999999999873 344543210 013589998865
No 231
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=34.56 E-value=42 Score=26.12 Aligned_cols=19 Identities=37% Similarity=0.691 Sum_probs=12.3
Q ss_pred ccCCCeEEEEcCCCCeeEE
Q 017962 259 LKSGKEVIVVDQKGRQRTA 277 (363)
Q Consensus 259 L~sG~eVLvVd~~G~~R~~ 277 (363)
+++||+|...|++|+--+.
T Consensus 6 f~~GdrVQlTD~Kgr~~Ti 24 (54)
T PF14801_consen 6 FRAGDRVQLTDPKGRKHTI 24 (54)
T ss_dssp --TT-EEEEEETT--EEEE
T ss_pred CCCCCEEEEccCCCCeeeE
Confidence 6899999999999987665
No 232
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.50 E-value=2.3e+02 Score=26.84 Aligned_cols=121 Identities=7% Similarity=-0.023 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhCccEEEEcc---cchhhhhhccce---eeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC
Q 017962 20 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTI---ALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 93 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~---~~~~~~~~~~~i---~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~ 93 (363)
++-+-+...++.|++.+++.. ++.++.+++..- ..+--|-..+|+++....+ -.++-++..+.....
T Consensus 86 rs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~-------~~~~~~~~~~~~~~~ 158 (234)
T PRK13587 86 RTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWE-------EDTELNLFSFVRQLS 158 (234)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCc-------ccCCCCHHHHHHHHH
Q ss_pred C--CceEEEeCCCCe------eeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017962 94 Q--AENIVIDLPDWQ------VIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 150 (363)
Q Consensus 94 ~--~~~vvv~~~dW~------iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl 150 (363)
. ...+|+..-+=. ..++-+-+++..+-+.-.-..+.|.++.+.++.. |++||++
T Consensus 159 ~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~---G~~~viv 220 (234)
T PRK13587 159 DIPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASL---NVHAAII 220 (234)
T ss_pred HcCCCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc---CCCEEEE
No 233
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=34.41 E-value=38 Score=31.41 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=27.2
Q ss_pred ceeEEEecCCceeeeee--ccCCCeEEEEc---CCCCeeEE
Q 017962 242 VHAYVLVPGGKTCYLSE--LKSGKEVIVVD---QKGRQRTA 277 (363)
Q Consensus 242 VHaYv~~pggkT~YLSE--L~sG~eVLvVd---~~G~~R~~ 277 (363)
.|+|.. .++.+-|++. +..|++||+|| +.|.|-.+
T Consensus 96 ~~s~~~-~~~~~l~i~~~~l~~G~rVLIVDDvvtTGgT~~a 135 (191)
T TIGR01744 96 VHSFTK-QTTSTVAVSGEFLSDQDRVLIIDDFLANGQAAHG 135 (191)
T ss_pred EEEeec-CccEEEEEEHHhCCCcCEEEEEEehhccChHHHH
Confidence 477777 5667888886 78999999999 77776444
No 234
>PRK14560 putative RNA-binding protein; Provisional
Probab=34.18 E-value=68 Score=28.65 Aligned_cols=53 Identities=30% Similarity=0.483 Sum_probs=38.7
Q ss_pred eeeecCCce-----eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccce
Q 017962 235 FRVNAGPVH-----AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 289 (363)
Q Consensus 235 FRVNAGaVH-----aYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPL 289 (363)
+-|+.|++. |-+++|| =+.+=.+++.||.|.|++.+ +....-||++++-..-|
T Consensus 79 v~Vd~~a~~~i~~Ga~lm~pG-V~~~~~~~~~Gd~V~I~~~~-~~~~vavG~~~~s~~ei 136 (160)
T PRK14560 79 VVVDAGAVKFVSNGADVMAPG-IVEADEDIKEGDIVFVVEET-HGKPLAVGRALMDGDEM 136 (160)
T ss_pred EEEeccHHHHHHCCCceecCe-eeeCCCCCCCCCEEEEEECC-CCeEEEEEEEeeCHHHH
Confidence 778888775 4555554 34555689999999999976 23558999999877655
No 235
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=34.04 E-value=1.5e+02 Score=26.97 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=37.4
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
..+.+++... +.++++.++...+-.++..+.+.++++. +.+.|+|++++.+
T Consensus 80 g~d~v~l~~~-----~~~~~~~~~~~~~i~~i~~v~~~~~~~~---~~~~gad~i~~~~ 130 (236)
T cd04730 80 GVPVVSFSFG-----PPAEVVERLKAAGIKVIPTVTSVEEARK---AEAAGADALVAQG 130 (236)
T ss_pred CCCEEEEcCC-----CCHHHHHHHHHcCCEEEEeCCCHHHHHH---HHHcCCCEEEEeC
Confidence 4778887544 4466777766666788888888888765 4568999999854
No 236
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=33.93 E-value=1.9e+02 Score=24.72 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=39.1
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 162 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~--~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~ 162 (363)
..+.++++..-...-.+ .++..++. ....++... +..+......+++.|+++.+.+|-++.++....
T Consensus 44 ~~dlvild~~l~~~~g~-~~~~~i~~~~~~~~ii~lt-~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i 112 (219)
T PRK10336 44 PYDAVILDLTLPGMDGR-DILREWREKGQREPVLILT-ARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 (219)
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHhcCCCCcEEEEE-CCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHH
Confidence 45777775332211111 22333322 234455544 445556667889999999999999988775443
No 237
>PF00386 C1q: C1q domain; InterPro: IPR001073 This entry represents the C-terminal domain of C1q. C1q is a subunit of the C1 enzyme complex that activates the serum complement system. C1q comprises 6 A, 6 B and 6 C chains. These share the same topology, each possessing a small, globular N-terminal domain, a collagen-like Gly/Pro-rich central region, and a conserved C-terminal region, the C1q domain []. The C1q protein is produced in collagen-producing cells and shows sequence and structural similarity to collagens VIII and X [, ]. This domain is also found in multimerin and EMILIN proteins.; PDB: 1O91_C 2JG8_D 2JG9_A 2WNV_A 2WNU_A 1PK6_A 4DOU_A 1C3H_C 1C28_C 2OII_A ....
Probab=33.76 E-value=37 Score=28.32 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=15.1
Q ss_pred ceeeeeecCCCCEEEEEecCC
Q 017962 328 KAIPVTSLKVGDEVLLRVQGA 348 (363)
Q Consensus 328 ~~vsVt~Lk~GD~VL~~~~~~ 348 (363)
.--.|.+|++||+|-+++..+
T Consensus 88 s~s~vl~L~~GD~V~v~~~~~ 108 (127)
T PF00386_consen 88 SNSAVLQLNKGDTVWVRLDSG 108 (127)
T ss_dssp EEEEEEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEEecC
Confidence 334578999999999999864
No 238
>PRK13794 hypothetical protein; Provisional
Probab=33.46 E-value=55 Score=34.52 Aligned_cols=53 Identities=19% Similarity=0.361 Sum_probs=36.0
Q ss_pred eeeecCCc-----eeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccce
Q 017962 235 FRVNAGPV-----HAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 289 (363)
Q Consensus 235 FRVNAGaV-----HaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPL 289 (363)
-.|+.|++ +-.-.++-|-+.-=.+++.||+|+|++.+|+ ..-||++++-..-|
T Consensus 127 V~Vd~ga~~~v~~~G~~v~~~GV~~~~~~i~~gd~V~Iv~~~g~--~iavG~a~~s~~ei 184 (479)
T PRK13794 127 IVVKDDVPKFIRNKGASVLRPGVAEASEDIEEGDDVIILDENGD--VVGVGRARMSYEEI 184 (479)
T ss_pred EEECccHHHHHHhCCCeecCCceEEecCCcCCCCEEEEEcCCCc--EEEEEEeecCHHHH
Confidence 45666765 2223334445555567899999999999986 58889988644433
No 239
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=33.30 E-value=2.6e+02 Score=25.43 Aligned_cols=106 Identities=13% Similarity=0.115 Sum_probs=53.2
Q ss_pred eeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCceEEEeCCC-Cee-e--ehhhhhhccc---CCCceEEE
Q 017962 55 LDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPD-WQV-I--PAENIVASFQ---GSGKTVFA 126 (363)
Q Consensus 55 i~~l~~~~g~~~~~~-gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~d-W~i-I--PlEnliA~~q---~~~~~l~a 126 (363)
|..|.+.||..+... |+.--......+|.++-+..... .++.+.+...+ +.- - -. .+++++- +-...+-.
T Consensus 3 ip~idl~~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~~-g~d~l~v~dl~~~~~~~~~~~-~~i~~i~~~~~~pv~~~G 80 (234)
T cd04732 3 IPAIDLKDGKCVRLYQGDYDKKTVYSDDPVEVAKKWEEA-GAKWLHVVDLDGAKGGEPVNL-ELIEEIVKAVGIPVQVGG 80 (234)
T ss_pred EEEEEeECCEEEEeecccCCCCeEECCCHHHHHHHHHHc-CCCEEEEECCCccccCCCCCH-HHHHHHHHhcCCCEEEeC
Confidence 344667777765432 22111122344555544443332 45666664332 200 0 01 1222221 12334445
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 127 ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 127 ~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
.++++++|+.+++ .|+|.|++.+.-..+...+++++
T Consensus 81 gI~~~e~~~~~~~---~Gad~vvigs~~l~dp~~~~~i~ 116 (234)
T cd04732 81 GIRSLEDIERLLD---LGVSRVIIGTAAVKNPELVKELL 116 (234)
T ss_pred CcCCHHHHHHHHH---cCCCEEEECchHHhChHHHHHHH
Confidence 7788888887774 79999999886544433344444
No 240
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=33.17 E-value=1.1e+02 Score=31.83 Aligned_cols=55 Identities=27% Similarity=0.332 Sum_probs=39.3
Q ss_pred EeeeeEEEeccceeEEEEEecCCCCeEEEEEeEe---------------cceEEEecCCCCCCCCCceeeeeecCCCCEE
Q 017962 277 AVVGRVKIESRPLILVEAKTNSGDQTLYGIILQN---------------AETVALVSPCKGTGEQEKAIPVTSLKVGDEV 341 (363)
Q Consensus 277 ~~VGRvKIE~RPLllIeAe~~~~~g~~~sviLQn---------------AETIrLv~p~~~~~~~g~~vsVt~Lk~GD~V 341 (363)
-.+||++|.-- | ..-|++..+..|| .+=|.|+..+ .|.|+.--+||-|++|
T Consensus 256 F~~G~~~I~G~-----~----~~~g~t~~i~FqNEfl~a~~~G~~l~~~PDLI~lld~~-----Tg~piTTe~lkyG~rV 321 (357)
T COG3535 256 FARGRVTIDGL-----E----EYRGSTLEIAFQNEFLVAEKDGKILATTPDLIVLLDLN-----TGLPITTESLKYGQRV 321 (357)
T ss_pred eeeeeEEEech-----h----hcCCceEEEEEEeeeeEEecCCcEEEecCceEEEEecC-----CCCccchHHhhcCcEE
Confidence 46788887642 1 1135666677777 4567888877 3788888899999999
Q ss_pred EEEe
Q 017962 342 LLRV 345 (363)
Q Consensus 342 L~~~ 345 (363)
.+.-
T Consensus 322 ~V~a 325 (357)
T COG3535 322 VVIA 325 (357)
T ss_pred EEEE
Confidence 9874
No 241
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.16 E-value=3e+02 Score=26.00 Aligned_cols=123 Identities=15% Similarity=0.014 Sum_probs=75.5
Q ss_pred chhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCceEE
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAENIV 99 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~-gk~v~~~~~v~~~e~~e~~~~~~~~~~~vv 99 (363)
-.+++.+.++.|+..+=++-.+..-.+.+..+..- .+.+ +-.+ --..|.++++.+.+... .++++|
T Consensus 27 a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~----------~~~~p~~~v-GaGTV~~~~~~~~a~~a--GA~Fiv 93 (213)
T PRK06552 27 ALKISLAVIKGGIKAIEVTYTNPFASEVIKELVEL----------YKDDPEVLI-GAGTVLDAVTARLAILA--GAQFIV 93 (213)
T ss_pred HHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHH----------cCCCCCeEE-eeeeCCCHHHHHHHHHc--CCCEEE
Confidence 35677888888888766654332222222222110 0000 1122 23579999997665543 467777
Q ss_pred EeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC---HHHHHHHHHhh
Q 017962 100 IDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED---VKAVLALKEYF 165 (363)
Q Consensus 100 v~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d---~~ei~~l~~~~ 165 (363)
--..+ +.++......+--++-.+.|++|+..+ ++.|+|-|-+-|.+ ++.++.++..+
T Consensus 94 sP~~~------~~v~~~~~~~~i~~iPG~~T~~E~~~A---~~~Gad~vklFPa~~~G~~~ik~l~~~~ 153 (213)
T PRK06552 94 SPSFN------RETAKICNLYQIPYLPGCMTVTEIVTA---LEAGSEIVKLFPGSTLGPSFIKAIKGPL 153 (213)
T ss_pred CCCCC------HHHHHHHHHcCCCEECCcCCHHHHHHH---HHcCCCEEEECCcccCCHHHHHHHhhhC
Confidence 43333 456666666777899999999999766 57999999996654 46666665554
No 242
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=33.06 E-value=61 Score=35.51 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=40.8
Q ss_pred CCCeeeec-----CCceeEEEecCCceeeeeeccCCCeE-EEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 232 SRPFRVNA-----GPVHAYVLVPGGKTCYLSELKSGKEV-IVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 232 ~RPFRVNA-----GaVHaYv~~pggkT~YLSEL~sG~eV-LvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
.|||-+.- |-+-=.+..-|.-|+||.+|+.||.| -+...-|+.-.. . +.+|+++|=.
T Consensus 44 ~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~l~~Gd~v~~v~GP~G~~~~~--~----~~~~~llvaG 106 (752)
T PRK12778 44 RIPLTIADADPEKGTITLVIQEVGLSTTKLCELNEGDYITDVVGPLGNPSEI--E----NYGTVVCAGG 106 (752)
T ss_pred eeEEEeeeeCCCCCEEEEEEEEcCchHHHHhcCCCCCEeCeEeCCCCCCccC--C----CCCeEEEEEC
Confidence 57888752 33444555568899999999999999 599999987432 1 2367777643
No 243
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=33.01 E-value=99 Score=27.28 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=22.8
Q ss_pred EcCCHHHHHHHH-HHhhcccCeEEEecCC
Q 017962 127 ISKTPSEAQIFL-EALEQGLGGIVLKVED 154 (363)
Q Consensus 127 ~v~~~~eA~~~~-~~LE~G~dGVvl~~~d 154 (363)
.+.|.++++.++ .+++.|-+|+|++..|
T Consensus 130 ~~~~~~~i~~~~~~~~~~g~EGlv~K~~d 158 (174)
T cd07896 130 PVKSNEALDQYLDEVVAAGGEGLMLRRPD 158 (174)
T ss_pred eeCCHHHHHHHHHHHHhcCCCeEEEecCC
Confidence 356888888777 7889999999999764
No 244
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=32.95 E-value=2.5e+02 Score=26.84 Aligned_cols=112 Identities=21% Similarity=0.184 Sum_probs=65.2
Q ss_pred hHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCceEEE
Q 017962 23 QVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 23 ~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~~~~~~~vvv 100 (363)
.+..+|.+.|+.++=... +|...+++.-++-+|..+ +.+ .+..+ +| |+ +-++.+.+.. ..++.+-+
T Consensus 3 ~mA~Aa~~gGA~giR~~~~~dI~aik~~v~lPIIGi~--K~~--y~~~~----V~--ITPT~~ev~~l~~--aGadIIAl 70 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRANGVEDIRAIKKAVDLPIIGII--KRD--YPDSD----VY--ITPTLKEVDALAE--AGADIIAL 70 (192)
T ss_dssp HHHHHHHHCT-SEEEEESHHHHHHHHTTB-S-EEEE---B-S--BTTSS--------BS-SHHHHHHHHH--CT-SEEEE
T ss_pred HHHHHHHHCCceEEEcCCHHHHHHHHHhcCCCEEEEE--ecc--CCCCC----eE--ECCCHHHHHHHHH--cCCCEEEE
Confidence 356789999999988764 334444444444444321 111 11111 22 44 5555555554 36888888
Q ss_pred eCCC-CeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 017962 101 DLPD-WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 149 (363)
Q Consensus 101 ~~~d-W~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVv 149 (363)
++++ ..=-+|+.++.+++....-+.|-++|.|||+.+ .+.|+|=|=
T Consensus 71 DaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A---~~~G~D~I~ 117 (192)
T PF04131_consen 71 DATDRPRPETLEELIREIKEKYQLVMADISTLEEAINA---AELGFDIIG 117 (192)
T ss_dssp E-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHH---HHTT-SEEE
T ss_pred ecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHH---HHcCCCEEE
Confidence 7652 112889999999988887899999999998765 578998554
No 245
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=32.76 E-value=42 Score=32.84 Aligned_cols=45 Identities=20% Similarity=0.398 Sum_probs=29.7
Q ss_pred ecCCc-eeee-eeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEE
Q 017962 248 VPGGK-TCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 295 (363)
Q Consensus 248 ~pggk-T~YL-SEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe 295 (363)
.|+|+ ++|| ..|+.||.|.+-...|+-..-. -.-..+|++||=+-
T Consensus 72 ~~~G~~S~~l~~~l~~Gd~v~v~gP~G~f~~~~---~~~~~~~~lliagG 118 (352)
T TIGR02160 72 IPGGLFSTWANDEIRPGDTLEVMAPQGLFTPDL---STPHAGHYVAVAAG 118 (352)
T ss_pred eCCCcchHHHHhcCCCCCEEEEeCCceeeecCC---CccccccEEEEecc
Confidence 36554 7899 5899999999988887642110 00123788888653
No 246
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=32.70 E-value=87 Score=30.40 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=29.6
Q ss_pred hhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017962 111 ENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 160 (363)
Q Consensus 111 EnliA~~q~~~~~l~a-~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~ 160 (363)
+.+++.++..+-.+++ .|++.++++.+ ++.|+|||+ ||.|+.+.+
T Consensus 251 ~~~v~~~~~~G~~v~vWTVNd~~~~~~l---~~~GVdgIi--TD~P~~l~~ 296 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVLNDEEEFERA---FELGADGVM--TDYPTKLRE 296 (300)
T ss_pred HHHHHHHHHCCCEEEEeecCCHHHHHHH---HhcCCCEEE--eCCHHHHHH
Confidence 3455666555555544 47777776654 568999987 788876543
No 247
>PRK06201 hypothetical protein; Validated
Probab=32.69 E-value=29 Score=32.85 Aligned_cols=44 Identities=34% Similarity=0.453 Sum_probs=31.5
Q ss_pred cCCceeEEEecCCce---eeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 017962 239 AGPVHAYVLVPGGKT---CYLSELKSGKEVIVVDQKGRQRTAVVGRVK 283 (363)
Q Consensus 239 AGaVHaYv~~pggkT---~YLSEL~sG~eVLvVd~~G~~R~~~VGRvK 283 (363)
+|+.-.--..|++.. .++...++|| |+++|..|..+.+..|-.-
T Consensus 54 ~G~A~Tv~~~~~d~~~~~~ai~~~~pG~-VlVid~~g~~~~a~~G~~~ 100 (221)
T PRK06201 54 AGTALTVRTRPGDNLMIHRALDLARPGD-VIVVDGGGDLTNALVGEIM 100 (221)
T ss_pred EEEEEEEEeeCCCcHHHHHHHhccCCCc-EEEEECCCCCCccchhHHH
Confidence 455444444454433 4588889999 9999999999999998654
No 248
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=32.40 E-value=3.1e+02 Score=25.09 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=24.5
Q ss_pred EEcCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHH
Q 017962 126 AISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALK 162 (363)
Q Consensus 126 a~v~~~~eA~~~~~~LE~G~dGVvl~~~---d~~ei~~l~ 162 (363)
..+++.++++.+++ .|+|.|++.+. |++.+.++.
T Consensus 79 gGI~~~ed~~~~~~---~Ga~~vvlgs~~l~d~~~~~~~~ 115 (230)
T TIGR00007 79 GGIRSLEDVEKLLD---LGVDRVIIGTAAVENPDLVKELL 115 (230)
T ss_pred CCcCCHHHHHHHHH---cCCCEEEEChHHhhCHHHHHHHH
Confidence 47788898887766 79999999864 454444433
No 249
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=32.29 E-value=67 Score=31.63 Aligned_cols=137 Identities=9% Similarity=0.125 Sum_probs=76.0
Q ss_pred EEEE-e--CchhHHHHHHHhCccEEEEcccc------hhhhhhccceeeee--eeeecCCccc-cCCCCe-eEEEEEecC
Q 017962 15 VWIW-T--ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKEGEVY-DSGDRR-VGSIIEVST 81 (363)
Q Consensus 15 vWvw-~--~~K~~vt~AlEsG~~~~v~~~~~------~~~~~~~~~i~~i~--~l~~~~g~~~-~~~gk~-v~~~~~v~~ 81 (363)
|.+- + .+.+.+..||+.|++.|.++..+ .++.+++..++.-. ++-.+.|.+= .+++.. ++ ...++
T Consensus 77 v~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g--~s~t~ 154 (281)
T PRK06806 77 VAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIE--MLLTS 154 (281)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCccccc--ceeCC
Confidence 5563 2 47899999999999999998543 23333333333211 1222222221 111111 12 23678
Q ss_pred hhhhhhhccccCCCceEEEeC-------CCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017962 82 PQELQQLQPADGQAENIVIDL-------PDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 154 (363)
Q Consensus 82 ~e~~e~~~~~~~~~~~vvv~~-------~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d 154 (363)
+++..++.... .+|++-+.. .+...|.+|-|=.--+..+.-|++.=.|--...-+-.+.+.|+++|=+.++=
T Consensus 155 ~eea~~f~~~t-g~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i 233 (281)
T PRK06806 155 TTEAKRFAEET-DVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINVATAT 233 (281)
T ss_pred HHHHHHHHHhh-CCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHHH
Confidence 98877766543 478887721 2445566664332222234456666533322333556799999999998873
No 250
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=32.10 E-value=3.2e+02 Score=26.13 Aligned_cols=121 Identities=19% Similarity=0.303 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhCcc--EEEEcccc-----hhhhhhccceee-eee--eeecCC--------------------------
Q 017962 20 ESKQVMTAAVERGWN--TFVFLSEN-----QQLAIDWSTIAL-LDP--LFIKEG-------------------------- 63 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~--~~v~~~~~-----~~~~~~~~~i~~-i~~--l~~~~g-------------------------- 63 (363)
.+.+-+.+|.+.|+| +|||.+.. .+.++++.+-.. ++. +|.+..
T Consensus 10 t~~eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e~~~~ 89 (208)
T COG0135 10 TRLEDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDEDPEY 89 (208)
T ss_pred CCHHHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCCCHHH
Q ss_pred --ccccCCCCeeEEEEEecChhhhhhhccccCCCceEEEeCC------------CCeeeehhhhhhcccCCCceEEEEcC
Q 017962 64 --EVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLP------------DWQVIPAENIVASFQGSGKTVFAISK 129 (363)
Q Consensus 64 --~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~------------dW~iIPlEnliA~~q~~~~~l~a~v~ 129 (363)
++...-+.++--.+.+....+++........++.++++.. ||+++|.= .....-++|.==
T Consensus 90 ~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~------~~~~~~~LAGGL 163 (208)
T COG0135 90 IDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL------RLSKPVMLAGGL 163 (208)
T ss_pred HHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc------cccCCEEEECCC
Q ss_pred CHHHHHHHHHHhh-cccC
Q 017962 130 TPSEAQIFLEALE-QGLG 146 (363)
Q Consensus 130 ~~~eA~~~~~~LE-~G~d 146 (363)
|++..+.++...- .|+|
T Consensus 164 ~p~NV~~ai~~~~p~gvD 181 (208)
T COG0135 164 NPDNVAEAIALGPPYGVD 181 (208)
T ss_pred CHHHHHHHHHhcCCceEE
No 251
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=32.01 E-value=2.2e+02 Score=26.65 Aligned_cols=128 Identities=17% Similarity=0.202 Sum_probs=65.0
Q ss_pred EEEEE--eCchhHHHHHHHhCccEEEEccc---chhh----hhhccceeeeeeeeecCC-ccccCCCCeeEEEEEecChh
Q 017962 14 RVWIW--TESKQVMTAAVERGWNTFVFLSE---NQQL----AIDWSTIALLDPLFIKEG-EVYDSGDRRVGSIIEVSTPQ 83 (363)
Q Consensus 14 ~vWvw--~~~K~~vt~AlEsG~~~~v~~~~---~~~~----~~~~~~i~~i~~l~~~~g-~~~~~~gk~v~~~~~v~~~e 83 (363)
.+|+- -++.+-+...++.|++.+++... +.+. ++..++=..+--|-..+| ..+...++.. . -.+++
T Consensus 75 ~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~-~---~~~~~ 150 (229)
T PF00977_consen 75 PIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQES-S---GIDLE 150 (229)
T ss_dssp EEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEE-E---EEEHH
T ss_pred cEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCcccc-C---CcCHH
Confidence 45652 25789999999999999998763 2233 333333233333444555 4443333321 0 12233
Q ss_pred hhhhhccccCCCceEEEeCCCC----eeeehh---hhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 84 ELQQLQPADGQAENIVIDLPDW----QVIPAE---NIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 84 ~~e~~~~~~~~~~~vvv~~~dW----~iIPlE---nliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
+.-......+ ...+|+..-|. +=+.+| .+.+.. +..+++ .++|.+|-+.+. +.|+||+++-+
T Consensus 151 ~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~---~~G~~gvivg~ 221 (229)
T PF00977_consen 151 EFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAV---NIPVIASGGVRSLEDLRELK---KAGIDGVIVGS 221 (229)
T ss_dssp HHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHH---SSEEEEESS--SHHHHHHHH---HTTECEEEESH
T ss_pred HHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHc---CCCEEEecCCCCHHHHHHHH---HCCCcEEEEeh
Confidence 3232233333 44555533221 113333 333332 445665 488999988777 99999999753
No 252
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=31.90 E-value=27 Score=31.89 Aligned_cols=69 Identities=26% Similarity=0.307 Sum_probs=41.5
Q ss_pred EEEeccCceEEEEeecccc--CCCCCCCCee-eecCCceeEEEecC-Cceeeeee--ccCCCeEEEEc---CCCCeeE
Q 017962 208 LLVGSFARGLFLVHSECLE--SNYIASRPFR-VNAGPVHAYVLVPG-GKTCYLSE--LKSGKEVIVVD---QKGRQRT 276 (363)
Q Consensus 208 mLVGs~s~glfLVhsEt~e--~~Yva~RPFR-VNAGaVHaYv~~pg-gkT~YLSE--L~sG~eVLvVd---~~G~~R~ 276 (363)
..||=-++|+.|-+.=..+ -||+..|=++ +--+-+|.+-.... -.|-|++. |+.||+|++|| +.|.|=.
T Consensus 56 ~Iv~iea~Gi~~a~~vA~~Lgvp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~ 133 (179)
T COG0503 56 KIVTIEARGIPLAAAVALELGVPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTAL 133 (179)
T ss_pred EEEEEccccchhHHHHHHHhCCCEEEEEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHHH
Confidence 4566666777765543333 4676666544 33344433333333 37777775 77999999999 6776633
No 253
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=31.78 E-value=32 Score=31.10 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=21.4
Q ss_pred ecce-EEEecCCCCCCCCCceeeeeecCCCCEEEEE
Q 017962 310 NAET-VALVSPCKGTGEQEKAIPVTSLKVGDEVLLR 344 (363)
Q Consensus 310 nAET-IrLv~p~~~~~~~g~~vsVt~Lk~GD~VL~~ 344 (363)
+.++ +++.+.+. ...++..+|+|||.|++.
T Consensus 31 ~~~~~~~v~r~~~-----~~~i~~~~L~~GDiI~l~ 61 (230)
T PF00122_consen 31 NPQKKVTVIRDGR-----WQKIPSSELVPGDIIILK 61 (230)
T ss_dssp SSSEEEEEEETTE-----EEEEEGGGT-TTSEEEEE
T ss_pred CCCccEEEEeccc-----cccchHhhccceeeeecc
Confidence 3445 66666542 577999999999999985
No 254
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=31.70 E-value=2.4e+02 Score=29.57 Aligned_cols=147 Identities=17% Similarity=0.206 Sum_probs=80.8
Q ss_pred CchhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEE
Q 017962 20 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 99 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vv 99 (363)
...+.+.+-++.|++.++++..|......+..+..+..-+ .+..+ ....+.+.++...+... .++.|.
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~---------p~~~v-i~g~v~t~e~a~~l~~a--Gad~i~ 295 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKY---------PDVQI-IAGNVATAEAARALIEA--GADAVK 295 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhC---------CCCCE-EEeccCCHHHHHHHHHc--CCCEEE
Confidence 3468888889999998888754432222222222221100 01222 22568888876665543 466665
Q ss_pred Ee-----------CCCCeeeehhhh---hhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017962 100 ID-----------LPDWQVIPAENI---VASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 163 (363)
Q Consensus 100 v~-----------~~dW~iIPlEnl---iA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~ 163 (363)
+- ..+|-+=.++-| ..+++..+..||+ .+.+..|+..| |..|+|.|++-+-
T Consensus 296 vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kA---la~GA~~v~~G~~---------- 362 (486)
T PRK05567 296 VGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKA---LAAGASAVMLGSM---------- 362 (486)
T ss_pred ECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHH---HHhCCCEEEECcc----------
Confidence 51 135543334433 3333344678999 89999998665 4569999997543
Q ss_pred hhcccccccceeeeeEEEEEEEEEcCCcce
Q 017962 164 YFDGRNEVSNLLSLMKATVTRVDVAGMGDR 193 (363)
Q Consensus 164 ~~~~~~~~~~~l~L~~atVt~V~~vGmGdR 193 (363)
+....++.+.+-....+--+ .--|||-.
T Consensus 363 -~a~~~e~pg~~~~~~g~~~k-~y~gm~s~ 390 (486)
T PRK05567 363 -LAGTEEAPGEVELYQGRSYK-SYRGMGSL 390 (486)
T ss_pred -ccccccCCCceEEECCEEEE-EEeccchH
Confidence 43334444444333322222 24488754
No 255
>PRK09483 response regulator; Provisional
Probab=31.51 E-value=2.9e+02 Score=23.64 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=28.7
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 162 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~ 162 (363)
...++.... ..+......+++.|++|.+.+|.++.++...-
T Consensus 75 ~~~ii~ls~-~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i 115 (217)
T PRK09483 75 DVKIIMLTV-HTENPLPAKVMQAGAAGYLSKGAAPQEVVSAI 115 (217)
T ss_pred CCeEEEEeC-CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 345555543 34455567889999999999999887765443
No 256
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=31.42 E-value=58 Score=30.36 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=40.1
Q ss_pred CCCeeeecCC-----ceeEEEecCCceeeeeeccCCCeE-EEEcCCCCeeEEeeeeEEEeccceeEEEEE
Q 017962 232 SRPFRVNAGP-----VHAYVLVPGGKTCYLSELKSGKEV-IVVDQKGRQRTAVVGRVKIESRPLILVEAK 295 (363)
Q Consensus 232 ~RPFRVNAGa-----VHaYv~~pggkT~YLSEL~sG~eV-LvVd~~G~~R~~~VGRvKIE~RPLllIeAe 295 (363)
.|||-+-..| ..=+|..-|.-|.||..|+.||+| .+....|+.-. +- ..+|+++|-+=
T Consensus 43 ~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~l~~G~~v~~i~gP~G~~~~----~~--~~~~~lliagG 106 (248)
T cd06219 43 RIPLTIADWDPEKGTITIVVQVVGKSTRELATLEEGDKIHDVVGPLGKPSE----IE--NYGTVVFVGGG 106 (248)
T ss_pred ccceEeEEEcCCCCEEEEEEEeCCchHHHHHhcCCCCEeeeeecCCCCCee----cC--CCCeEEEEeCc
Confidence 4677653332 334455568899999999999999 59999998532 11 25788888653
No 257
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=31.31 E-value=1.2e+02 Score=27.02 Aligned_cols=118 Identities=16% Similarity=0.112 Sum_probs=61.3
Q ss_pred CCCCcEEEEEeC-------chhHHHHHHHhCccEEEEcccc---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEE
Q 017962 9 SSKPKRVWIWTE-------SKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIE 78 (363)
Q Consensus 9 ~~~~K~vWvw~~-------~K~~vt~AlEsG~~~~v~~~~~---~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~ 78 (363)
+..++-+||-+. -.+.+..++++|++.|.++..+ .+..+.+.++..+ ...-|.. .+
T Consensus 4 ~~~~~~~~it~~~~~~~~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~----------~~~~~~~--l~-- 69 (212)
T PRK00043 4 MKLLRLYLITDSRDDSGRDLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKEL----------CRRYGVP--LI-- 69 (212)
T ss_pred CCCCCEEEEECCcccccccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHH----------HHHhCCe--EE--
Confidence 344555666321 2457889999999999886432 1222222222111 0111211 11
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 79 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 79 v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
+. ++.+.+.. . .++.+.+...+ .|.+. +..+.+....+-..++|.+|++. +++.|+|-|.+.
T Consensus 70 ~~--~~~~~a~~-~-gad~vh~~~~~---~~~~~-~~~~~~~~~~~g~~~~t~~e~~~---a~~~gaD~v~~~ 131 (212)
T PRK00043 70 VN--DRVDLALA-V-GADGVHLGQDD---LPVAD-ARALLGPDAIIGLSTHTLEEAAA---ALAAGADYVGVG 131 (212)
T ss_pred Ee--ChHHHHHH-c-CCCEEecCccc---CCHHH-HHHHcCCCCEEEEeCCCHHHHHH---HhHcCCCEEEEC
Confidence 21 33333222 2 45666664333 33332 33444455567778888888755 457899999874
No 258
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=31.26 E-value=42 Score=30.41 Aligned_cols=49 Identities=27% Similarity=0.419 Sum_probs=32.5
Q ss_pred CCceeEEEe-cCCc-eeeee-eccCCCeEEEEcCCCCeeEEeeeeEEE-eccceeEEEE
Q 017962 240 GPVHAYVLV-PGGK-TCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKI-ESRPLILVEA 294 (363)
Q Consensus 240 GaVHaYv~~-pggk-T~YLS-EL~sG~eVLvVd~~G~~R~~~VGRvKI-E~RPLllIeA 294 (363)
|-.-=++.. |+|+ |+||. .|+.||+|.+....|+... .- ..+|+++|=+
T Consensus 58 ~~l~~~v~~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l------~~~~~~~~lliag 110 (231)
T cd06191 58 DEISITVKRVPGGRVSNYLREHIQPGMTVEVMGPQGHFVY------QPQPPGRYLLVAA 110 (231)
T ss_pred CeEEEEEEECCCCccchHHHhcCCCCCEEEEeCCccceEe------CCCCCCcEEEEec
Confidence 334444543 6564 99997 6999999999998887421 11 2367777654
No 259
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=31.25 E-value=37 Score=30.55 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhcccCeEEEec
Q 017962 132 SEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 132 ~eA~~~~~~LE~G~dGVvl~~ 152 (363)
-++.-.|.+|.+|+|||++.-
T Consensus 41 vn~~fvl~Al~~GaDGV~v~G 61 (132)
T COG1908 41 VNPEFVLKALRKGADGVLVAG 61 (132)
T ss_pred cCHHHHHHHHHcCCCeEEEec
Confidence 478899999999999999864
No 260
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.11 E-value=4.7e+02 Score=24.89 Aligned_cols=128 Identities=11% Similarity=-0.025 Sum_probs=61.7
Q ss_pred EEEEE--eCchhHHHHHHHhCccEEEEccc---chhhhhhccce----eeeeeeee-cCCccccCCCCeeEEEEE-ecCh
Q 017962 14 RVWIW--TESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTI----ALLDPLFI-KEGEVYDSGDRRVGSIIE-VSTP 82 (363)
Q Consensus 14 ~vWvw--~~~K~~vt~AlEsG~~~~v~~~~---~~~~~~~~~~i----~~i~~l~~-~~g~~~~~~gk~v~~~~~-v~~~ 82 (363)
.+|+= -++.+-+..+++.|++.+++... +.++.+++.+- .++--|-. .++.+...... + -.++
T Consensus 75 ~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~------~~~~~~ 148 (232)
T PRK13586 75 WIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWK------EKSMEV 148 (232)
T ss_pred CEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCe------eCCCCH
Confidence 35662 26788899999999999998763 33444443221 11111222 22322211111 1 0122
Q ss_pred hhhhhhccccCCCceEEEeCC--C-C-eeeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 83 QELQQLQPADGQAENIVIDLP--D-W-QVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 83 e~~e~~~~~~~~~~~vvv~~~--d-W-~iIPlEnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
.++-......+ +..+|+..- | = +=+.+| ++..+......+++ .++|.+|-+.+.. .|+||+++-+
T Consensus 149 ~e~~~~l~~~g-~~~ii~tdI~~dGt~~G~d~e-l~~~~~~~~~~viasGGv~s~~Dl~~l~~---~G~~gvivg~ 219 (232)
T PRK13586 149 IDGIKKVNELE-LLGIIFTYISNEGTTKGIDYN-VKDYARLIRGLKEYAGGVSSDADLEYLKN---VGFDYIIVGM 219 (232)
T ss_pred HHHHHHHHhcC-CCEEEEecccccccCcCcCHH-HHHHHHhCCCCEEEECCCCCHHHHHHHHH---CCCCEEEEeh
Confidence 22222222222 344554321 1 1 123333 23333222222443 4788888887663 5999999864
No 261
>PF13403 Hint_2: Hint domain
Probab=31.06 E-value=43 Score=29.70 Aligned_cols=16 Identities=50% Similarity=0.765 Sum_probs=14.6
Q ss_pred eeeeeecCCCCEEEEE
Q 017962 329 AIPVTSLKVGDEVLLR 344 (363)
Q Consensus 329 ~vsVt~Lk~GD~VL~~ 344 (363)
+++|-+|++||+|+-+
T Consensus 15 ~~~Ve~L~~GD~V~T~ 30 (147)
T PF13403_consen 15 PRPVEDLRPGDRVLTR 30 (147)
T ss_pred CeEeeccCCCCEEEec
Confidence 6899999999999976
No 262
>CHL00148 orf27 Ycf27; Reviewed
Probab=30.87 E-value=1.5e+02 Score=25.71 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=28.6
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++..... .+......+++.|+++++.+|-++.++.+.
T Consensus 77 ~~~ii~ls~~-~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~ 116 (240)
T CHL00148 77 DVPIIMLTAL-GDVSDRITGLELGADDYVVKPFSPKELEAR 116 (240)
T ss_pred CCcEEEEECC-CCHHhHHHHHHCCCCEEEeCCCCHHHHHHH
Confidence 3455554433 444556788999999999999999887543
No 263
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=30.84 E-value=2e+02 Score=24.73 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=39.1
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 162 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~-~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~ 162 (363)
..+.++++..-...-.+ .++..++. ....++... +..+......+++.|+++.+.+|-++.++...-
T Consensus 44 ~~dlvi~d~~~~~~~g~-~~~~~l~~~~~~~ii~ls-~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i 111 (223)
T PRK11517 44 DYALIILDIMLPGMDGW-QILQTLRTAKQTPVICLT-ARDSVDDRVRGLDSGANDYLVKPFSFSELLARV 111 (223)
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHcCCCCCEEEEE-CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHH
Confidence 46777774332211111 22222221 134455544 344556678999999999999999988775443
No 264
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=30.67 E-value=3.4e+02 Score=24.80 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=26.7
Q ss_pred EEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 124 VFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 124 l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
+-..+++.++++.++. .|+|+|++.+.-......++++.
T Consensus 79 ~~GGI~~~ed~~~~~~---~Ga~~vilg~~~l~~~~~l~ei~ 117 (233)
T PRK00748 79 VGGGIRSLETVEALLD---AGVSRVIIGTAAVKNPELVKEAC 117 (233)
T ss_pred EcCCcCCHHHHHHHHH---cCCCEEEECchHHhCHHHHHHHH
Confidence 3447899999987766 59999999986443332334433
No 265
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=30.61 E-value=97 Score=30.70 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=34.1
Q ss_pred ceEEEEcCCHHH-HHHHHHHhhc---ccCeEEEecC------CHHHHHHHHHhhcc
Q 017962 122 KTVFAISKTPSE-AQIFLEALEQ---GLGGIVLKVE------DVKAVLALKEYFDG 167 (363)
Q Consensus 122 ~~l~a~v~~~~e-A~~~~~~LE~---G~dGVvl~~~------d~~ei~~l~~~~~~ 167 (363)
.++..++.+.++ +.-++++++. |+|+|.|++- .++.++++++.++.
T Consensus 185 ~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~ 240 (302)
T cd01571 185 VPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSRRGVFRYLIREVRWALDI 240 (302)
T ss_pred CCeEEEEeecCcchHHHHHHHHHhCCCCcEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence 479999999983 5555555555 5999999984 46778888887743
No 266
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=30.56 E-value=4.1e+02 Score=24.04 Aligned_cols=102 Identities=24% Similarity=0.326 Sum_probs=57.6
Q ss_pred EEEEEEEEEcCCcce-EEEeec------CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCC----ceeEEE
Q 017962 179 KATVTRVDVAGMGDR-VCVDLC------SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGP----VHAYVL 247 (363)
Q Consensus 179 ~atVt~V~~vGmGdR-VCVDtc------sll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVNAGa----VHaYv~ 247 (363)
.++|++++++.-+-+ +++..- ..+.||+=+.|.- .. ..+ -.+|||-+-..| ++=++.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~---------~~--~g~-~~~r~ysi~s~~~~~~l~~~i~ 70 (241)
T cd06214 3 PLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRV---------PI--DGE-EVRRSYSICSSPGDDELRITVK 70 (241)
T ss_pred eEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEe---------ec--CCC-eeeeeeeecCCCCCCcEEEEEE
Confidence 467888888864433 344431 1355665444321 11 011 124777765443 444454
Q ss_pred e-cCC-ceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEe
Q 017962 248 V-PGG-KTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKT 296 (363)
Q Consensus 248 ~-pgg-kT~YLS-EL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~ 296 (363)
. ++| -|.||. .++.||+|.+....|+-....-. ..+|+++|=+-.
T Consensus 71 ~~~~G~~s~~l~~~~~~G~~v~i~gP~G~~~~~~~~----~~~~~llia~Gt 118 (241)
T cd06214 71 RVPGGRFSNWANDELKAGDTLEVMPPAGRFTLPPLP----GARHYVLFAAGS 118 (241)
T ss_pred EcCCCccchhHHhccCCCCEEEEeCCccccccCCCC----CCCcEEEEeccc
Confidence 3 444 589996 89999999998887755221110 257888775543
No 267
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=30.28 E-value=39 Score=37.12 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=32.4
Q ss_pred eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEecccee
Q 017962 244 AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLI 290 (363)
Q Consensus 244 aYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLl 290 (363)
+-|..|| =...=.++++||+|+||+.+| +..-|||+++-.+-|.
T Consensus 580 ~~v~apg-Vv~~d~~ir~gDeV~Vv~e~~--~~lavG~A~~~~~em~ 623 (639)
T PRK13534 580 KSVFAKF-VIDCDEEIRPYDEVLVVNEDD--ELLAYGKALLNGRELM 623 (639)
T ss_pred CcccCCc-ceecCCCCCCCCEEEEEecCC--cEEEEEEEecCHHHHh
Confidence 3444443 233336899999999999887 5699999998777665
No 268
>KOG3638 consensus Sonic hedgehog and related proteins [Signal transduction mechanisms]
Probab=30.24 E-value=1.3e+02 Score=31.26 Aligned_cols=144 Identities=18% Similarity=0.209 Sum_probs=80.3
Q ss_pred EEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEecCCceeeeeeccCCCe
Q 017962 185 VDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKE 264 (363)
Q Consensus 185 V~~vGmGdRVCVDtcsll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~e 264 (363)
-...++.+|.-++.-..=. .-=+++..+.-+++++ |++..++ ++=+-|+=+.+-.+-.+=+.||..||.
T Consensus 165 c~~~~~~~r~~~e~~~~~~-----~~~~~~~~~~~~~~~~----~~~~~~~--~cf~~~~~~~~~~~~~k~m~el~iGD~ 233 (414)
T KOG3638|consen 165 CLDYPQAARLAVEAGFDWE-----TYRVVEHAHNSAKASS----SVAHQPP--VCFPTDATVVLEQGGRKRMDELSIGDY 233 (414)
T ss_pred cCCcccccccccccccccc-----ceeecccccceeeccC----ccccCCC--CCCCCCCEeEEecCceeecCCCCCCCe
Confidence 3345666666555432211 1113334444455443 3333333 444555555554454566999999999
Q ss_pred EEEEcCCCCeeEEee----eeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCCC-------CCCceeeee
Q 017962 265 VIVVDQKGRQRTAVV----GRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTG-------EQEKAIPVT 333 (363)
Q Consensus 265 VLvVd~~G~~R~~~V----GRvKIE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~p~~~~~-------~~g~~vsVt 333 (363)
||+.|..|++--..| =|--=...+++.|+++- |+ .|.+-+.|.=.+.+...+. -+.+++.-.
T Consensus 234 Vla~~~~~~~~~spv~~~lhR~pe~~~~F~~i~t~~----g~---~l~lT~~Hl~~~~~c~~~~~~~~~~~~~~~~v~A~ 306 (414)
T KOG3638|consen 234 VLAADQGGQTTYSPVALFLHREPEARAEFVVIETEQ----GE---TLQLTPQHLVFVAQCQQQPQQFQYGPAGLEAVFAS 306 (414)
T ss_pred eeccccCCccccCchhhhhccCccccccceEEecCC----Cc---ccccchhheeecCCCCCCccccccccCCcccccHh
Confidence 999998555432211 11111345566777653 54 3444444544444442221 146789999
Q ss_pred ecCCCCEEEEEec
Q 017962 334 SLKVGDEVLLRVQ 346 (363)
Q Consensus 334 ~Lk~GD~VL~~~~ 346 (363)
.|++||-|++.-.
T Consensus 307 ~l~~gdcv~~~~~ 319 (414)
T KOG3638|consen 307 RLRIGDCVLVAPG 319 (414)
T ss_pred hCCcccEEEEecC
Confidence 9999999999874
No 269
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=30.13 E-value=34 Score=35.20 Aligned_cols=34 Identities=32% Similarity=0.506 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 017962 131 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEY 164 (363)
Q Consensus 131 ~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~ 164 (363)
...-+++-.+||.|+|+|++.++|.+.+++|.++
T Consensus 13 ~~~k~~vt~AlEsGv~~vvv~~~~~~~v~~lg~i 46 (344)
T PRK02290 13 EERKEVVTTALESGVDGVVVDEEDVERVRELGRI 46 (344)
T ss_pred hhHHHHHHHHHHcCCCEEEECHHHhHHHHhhCCe
Confidence 3455677889999999999999988888877654
No 270
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=30.06 E-value=1.2e+02 Score=30.61 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=35.6
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
.+|=.+|.|++|++ ++|+.|+|=|+|+.=+|+++++..+.+
T Consensus 189 ~kIEVEvesle~~~---eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 189 KKIEVEVESLEEAE---EALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred ceEEEEcCCHHHHH---HHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 46889999999987 567889999999999999998887774
No 271
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=29.74 E-value=65 Score=26.00 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=18.0
Q ss_pred eccCCCeEEEEcCCCCeeEEeeeeEEEe
Q 017962 258 ELKSGKEVIVVDQKGRQRTAVVGRVKIE 285 (363)
Q Consensus 258 EL~sG~eVLvVd~~G~~R~~~VGRvKIE 285 (363)
-|+.||.|.+.+..|+. ..+||+.
T Consensus 48 gi~~Gd~V~v~~~~G~~----~~~v~~~ 71 (120)
T cd00508 48 GIKDGDLVRVSSRRGSV----VVRARVT 71 (120)
T ss_pred CCCCCCEEEEEeCCEEE----EEEEEEC
Confidence 47899999999998843 3466654
No 272
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=29.59 E-value=2.4e+02 Score=25.43 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=28.8
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..++.... .++......+++.|++|.+.+|-+++++.+.
T Consensus 79 ~~iivls~-~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~ 117 (225)
T PRK10046 79 GDVVFTTA-ASDMETVSEAVRCGVFDYLIKPIAYERLGQT 117 (225)
T ss_pred CCEEEEEc-CCCHHHHHHHHHcCccEEEECCcCHHHHHHH
Confidence 45555443 3445667889999999999999998877543
No 273
>PRK13856 two-component response regulator VirG; Provisional
Probab=29.53 E-value=3.5e+02 Score=24.05 Aligned_cols=40 Identities=25% Similarity=0.171 Sum_probs=28.4
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..++.......+......+++.|+|+++.+|-++.++.+.
T Consensus 73 ~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~ 112 (241)
T PRK13856 73 VPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLAR 112 (241)
T ss_pred CcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHH
Confidence 4455555433344445688999999999999999887543
No 274
>PRK13795 hypothetical protein; Provisional
Probab=29.47 E-value=59 Score=35.43 Aligned_cols=54 Identities=28% Similarity=0.437 Sum_probs=39.7
Q ss_pred eeeecCCcee----EEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEecccee
Q 017962 235 FRVNAGPVHA----YVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLI 290 (363)
Q Consensus 235 FRVNAGaVHa----Yv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLl 290 (363)
--|+.|++++ .-.++-|=+..=.+++.||.|+|++.+|+. .-||++++-..-|.
T Consensus 129 VvVd~ga~~~v~~Ga~l~~~GI~~~~~~i~~gd~V~I~~e~g~~--vavG~a~~s~~e~~ 186 (636)
T PRK13795 129 VIVDKGALEPIKNGKNVLAPGVVEADLDIKKGDEVVVVTEDGEV--VGVGRAKMDGDDMI 186 (636)
T ss_pred EEEcccHHHHHHcCCcccCCceEEEeCCCCCCCEEEEEeCCCCE--EEEEEeccCHHHHh
Confidence 4578888753 333445566666789999999999998874 88999988665553
No 275
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=29.41 E-value=25 Score=28.37 Aligned_cols=28 Identities=29% Similarity=0.660 Sum_probs=24.6
Q ss_pred eeeeeecCCCCEEEEEecCCCcccceee
Q 017962 329 AIPVTSLKVGDEVLLRVQGAARHTGIEI 356 (363)
Q Consensus 329 ~vsVt~Lk~GD~VL~~~~~~gRHfG~~I 356 (363)
.++..+++|||-|..+.....-|+||-+
T Consensus 46 ~~~~~~~~pGDlif~~~~~~~~Hvgiy~ 73 (105)
T PF00877_consen 46 RVPISELQPGDLIFFKGGGGISHVGIYL 73 (105)
T ss_dssp HEEGGG-TTTEEEEEEGTGGEEEEEEEE
T ss_pred ccchhcCCcccEEEEeCCccCCEeEEEE
Confidence 5899999999999999988888999977
No 276
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=29.36 E-value=87 Score=31.33 Aligned_cols=47 Identities=9% Similarity=0.160 Sum_probs=30.9
Q ss_pred hhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017962 112 NIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 163 (363)
Q Consensus 112 nliA~~q~~~~~l~a~-v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~ 163 (363)
.++++++..+-++.+- |++.++++.++ +.|+|||+ ||.|+.+.++..
T Consensus 236 ~~v~~a~~~Gl~V~vWTVNd~~~~~~l~---~~GVDgIi--TD~P~~l~~~~~ 283 (316)
T cd08610 236 NDIRDYKAANIHTNVYVINEPWLFSLAW---CSGIHSVT--TNNIHLLKQLDH 283 (316)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHH---hCCcCEEE--eCCHHHHHHhhc
Confidence 4555555555555554 77777776554 57999976 788887655444
No 277
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.26 E-value=1.5e+02 Score=29.32 Aligned_cols=41 Identities=7% Similarity=0.070 Sum_probs=34.2
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
..|-.+++|.+||+.+ ++.|+|-|.|++=.+++++++.+.+
T Consensus 189 ~~Igvsv~tleea~~A---~~~gaDyI~lD~~~~e~l~~~~~~~ 229 (277)
T PRK08072 189 VKIEVETETEEQVREA---VAAGADIIMFDNRTPDEIREFVKLV 229 (277)
T ss_pred CEEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHhc
Confidence 4678999999998876 4799999999888888888777755
No 278
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=28.65 E-value=1.3e+02 Score=27.99 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=28.2
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..+++......+++...-..++.|++|.+.++.+++++.+.
T Consensus 68 ~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~a 108 (207)
T PRK11475 68 RMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQE 108 (207)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHH
Confidence 55777665544444433344489999999999999887553
No 279
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.62 E-value=1.7e+02 Score=28.88 Aligned_cols=84 Identities=18% Similarity=0.350 Sum_probs=45.2
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEe-EecceEEEecCCCCCC
Q 017962 246 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIIL-QNAETVALVSPCKGTG 324 (363)
Q Consensus 246 v~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sviL-QnAETIrLv~p~~~~~ 324 (363)
|.+|-|-|.| -|.+|..++-=+.+.-.- .++---..-.||+++ . +..++++-+ .+.+.+.|.-.+
T Consensus 181 vsTptGSTAY--slSAGGPii~P~~~~~~i-tPI~Phsl~~rplVl-----~--~~~~i~i~~~~~~~~~~l~~DG---- 246 (292)
T PRK03378 181 ISTPTGSTAY--SLSAGGPILTPSLDAITL-VPMFPHTLSARPLVI-----D--SSSTIRLKFSPNRSDLEISCDS---- 246 (292)
T ss_pred EeCCCchHHh--HhhcCCceeCCCCCeEEE-EecccccCCCCCEEE-----C--CCCEEEEEEccCCCcEEEEECC----
Confidence 5667788887 245566544333322111 122223344678776 2 234455533 223455555433
Q ss_pred CCCceeeeeecCCCCEEEEEecCC
Q 017962 325 EQEKAIPVTSLKVGDEVLLRVQGA 348 (363)
Q Consensus 325 ~~g~~vsVt~Lk~GD~VL~~~~~~ 348 (363)
. ...+|++||+|.++....
T Consensus 247 ---~--~~~~l~~gd~i~i~~s~~ 265 (292)
T PRK03378 247 ---Q--IALPIQPGEEVLIRRSDY 265 (292)
T ss_pred ---c--eEEEcCCCcEEEEEECCC
Confidence 2 367899999998887654
No 280
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=28.49 E-value=72 Score=32.46 Aligned_cols=31 Identities=10% Similarity=-0.019 Sum_probs=26.1
Q ss_pred CCcEEEEEe-CchhHHHHHHHhCccEEEEccc
Q 017962 11 KPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 41 (363)
Q Consensus 11 ~~K~vWvw~-~~K~~vt~AlEsG~~~~v~~~~ 41 (363)
....+++|| .+++.+...++.|+|+++.+..
T Consensus 222 ~Gl~V~vWTVN~~~~~~~l~~~GVdgIiTD~P 253 (351)
T cd08608 222 SNLSVNLYTVNEPWLYSLLWCSGVPSVTSDAS 253 (351)
T ss_pred CCCEEEEEecCCHHHHHHHHHCCCCEEEECCH
Confidence 456799999 5689999999999999998653
No 281
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=28.19 E-value=79 Score=32.02 Aligned_cols=49 Identities=10% Similarity=0.231 Sum_probs=32.1
Q ss_pred ehhhhhhcccCCCceEEEE-cCCH------HHHHHHHHHh--hcccCeEEEecCCHHHHH
Q 017962 109 PAENIVASFQGSGKTVFAI-SKTP------SEAQIFLEAL--EQGLGGIVLKVEDVKAVL 159 (363)
Q Consensus 109 PlEnliA~~q~~~~~l~a~-v~~~------~eA~~~~~~L--E~G~dGVvl~~~d~~ei~ 159 (363)
+..+++++++..+-.|++. +++. .++..+...+ +.|+|||+ ||.|+.+.
T Consensus 291 ~~~~~v~~ah~~Gl~V~~WTVn~~~~~~~~~d~~~~~~~~~~~~GVDGIi--TD~P~~~~ 348 (355)
T PRK11143 291 KLTGMVKEAHQAKLVVHPYTVRADQLPEYATDVNQLYDILYNQAGVDGVF--TDFPDKAV 348 (355)
T ss_pred ChHHHHHHHHHcCCEEEEEEeccccchhhhcChHHHHHHHHHccCCCEEE--cCChHHHH
Confidence 4458999998877776554 4431 1233333333 88999999 88888664
No 282
>PF04203 Sortase: Sortase family; InterPro: IPR005754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C60 (clan C-) and include the members of both subfamilies of sortases. The Staphylococcus aureus sortase is a transpeptidase that attaches surface proteins to the cell wall; it cleaves between the Gly and Thr of the LPXTG motif and catalyses the formation of an amide bond between the carboxyl-group of threonine and the amino-group of the cell-wall peptidoglycan []. Sortase homologues are found in almost all Gram-positives, a single Gram-negative (Shewanella putrefaciens) and an archaean (Methanobacterium thermoautotrophicum), where cell wall LPXTG-mediated decoration has not been reported [, ]. Surface proteins not only promote interaction between the invading pathogen and animal tissues, but also provide ingenious strategies for bacterial escape from the host's immune response. In the case of S. aureus protein A, immunoglobulins are captured on the microbial surface and camouflage bacteria during the invasion of host tissues. S. aureus mutants lacking the srtA gene fail to anchor and display some surface proteins and are impaired in the ability to cause animal infections. Sortase acts on surface proteins that are initiated into the secretion (Sec) pathway and have their signal peptide removed by signal peptidase. The S. aureus genome encodes two sets of sortase and secretion genes. It is conceivable that S. aureus has evolved more than one pathway for the transport of 20 surface proteins to the cell wall envelope. ; PDB: 2W1K_A 2OQZ_A 1RZ2_A 2OQW_A 1T2W_A 1IJA_A 1T2P_A 1T2O_C 2KID_A 3RCC_N ....
Probab=28.13 E-value=75 Score=26.39 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=26.6
Q ss_pred cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 017962 249 PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVK 283 (363)
Q Consensus 249 pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvK 283 (363)
.+..-+.|.+++.||+|.+.+.+|+..+--|=+++
T Consensus 51 ~~~~F~~L~~~~~gd~i~~~~~~g~~~~Y~V~~~~ 85 (128)
T PF04203_consen 51 GGAMFSNLNKLKKGDEIYLTTPDGKTYEYRVTSVK 85 (128)
T ss_dssp TSSTTCGGGGGHTT-EEEEEETSSEEEEEEEEEEE
T ss_pred CCcccccccccCCCCEEEEEEecCEEEEEEEEEEE
Confidence 45556678999999999999999988666555555
No 283
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=28.08 E-value=3.4e+02 Score=29.32 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=47.5
Q ss_pred EEEEEecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhh----cccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 017962 74 GSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVA----SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 149 (363)
Q Consensus 74 ~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA----~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVv 149 (363)
..+.+.++++-++++-. .+++.+|+...|. -.|+.. +-...+.+|++.++|.++++.... .|+|-|+
T Consensus 446 v~~GDat~~~~L~~agi--~~A~~vv~~~~d~----~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~---~Ga~~vv 516 (601)
T PRK03659 446 VYYGDATQLELLRAAGA--EKAEAIVITCNEP----EDTMKIVELCQQHFPHLHILARARGRVEAHELLQ---AGVTQFS 516 (601)
T ss_pred EEEeeCCCHHHHHhcCC--ccCCEEEEEeCCH----HHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHh---CCCCEEE
Confidence 46677788777666543 3578888877775 344322 222446699999999999987654 6999887
Q ss_pred Ee
Q 017962 150 LK 151 (363)
Q Consensus 150 l~ 151 (363)
-.
T Consensus 517 ~e 518 (601)
T PRK03659 517 RE 518 (601)
T ss_pred cc
Confidence 44
No 284
>PF06938 DUF1285: Protein of unknown function (DUF1285); InterPro: IPR010707 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.; PDB: 2RA9_A 2RE3_B.
Probab=27.87 E-value=2.7e+02 Score=25.25 Aligned_cols=37 Identities=19% Similarity=0.479 Sum_probs=23.5
Q ss_pred eeEEEeccceeEEEEEec-CCCCe-EEEEEeEecceEEE
Q 017962 280 GRVKIESRPLILVEAKTN-SGDQT-LYGIILQNAETVAL 316 (363)
Q Consensus 280 GRvKIE~RPLllIeAe~~-~~~g~-~~sviLQnAETIrL 316 (363)
.|+.+|.-|++.++.+.. +++|+ .+.+.....+.+++
T Consensus 46 ~~I~VEDaPf~iv~~~~~~~~~~~~~l~~~tn~gd~~~~ 84 (148)
T PF06938_consen 46 VRIQVEDAPFLIVDVDVEGEGEGQQVLTFRTNTGDVVRL 84 (148)
T ss_dssp EEEEESS-SEEEEEEEECS-GCCT-EEEEEETTS-EEE-
T ss_pred EEEEEecCcEEEEEEEEeccCCCceEEEEEeccCcEEEc
Confidence 588999999999999985 33344 55666555555544
No 285
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=27.52 E-value=1.9e+02 Score=26.63 Aligned_cols=76 Identities=20% Similarity=0.194 Sum_probs=53.0
Q ss_pred CceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCCCCCCcee
Q 017962 251 GKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGEQEKAI 330 (363)
Q Consensus 251 gkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~p~~~~~~~g~~v 330 (363)
+...+++=.+-||-|.+ .++...+||..+| +.||+.++ +......-+=+.-..-+|..|. .|+|.
T Consensus 62 d~v~F~~Pv~vGd~v~~-----~a~v~~~GrTSm~----V~Vev~~~--~~~~~~~~~~t~~~ft~VAvd~----~gkP~ 126 (157)
T COG1607 62 DSVDFKKPVRVGDIVCL-----YARVVYTGRTSME----VGVEVWAE--DIRSGERRLATSAYFTFVAVDE----DGKPT 126 (157)
T ss_pred ceEEEccccccCcEEEE-----EEEEeecCcccEE----EEEEEEEe--cccCCcceEeeeEEEEEEEECC----CCCcc
Confidence 55677788899999999 5889999999998 46777764 2222222222334455666663 28899
Q ss_pred eeeecCCCCEE
Q 017962 331 PVTSLKVGDEV 341 (363)
Q Consensus 331 sVt~Lk~GD~V 341 (363)
+|-.+.+.++.
T Consensus 127 ~vp~~~~~~~~ 137 (157)
T COG1607 127 PVPREEPETEE 137 (157)
T ss_pred cCCccCCccHH
Confidence 99999998874
No 286
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=27.48 E-value=50 Score=35.30 Aligned_cols=135 Identities=20% Similarity=0.260 Sum_probs=84.2
Q ss_pred eCchhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCc
Q 017962 19 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAE 96 (363)
Q Consensus 19 ~~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~-gk~v~~~~~v~~~e~~e~~~~~~~~~~ 96 (363)
+.||+-+..+++-|+|.+-... .+.+.+++..++ +.+. |..+..+.+|..++.++.+-.-....|
T Consensus 175 eKD~~dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~~-------------l~~~~~~~~~iiaKIE~~eav~NldeIi~~SD 241 (477)
T COG0469 175 EKDKEDLKFGLEQGVDFVALSFVRNAEDVEEVREI-------------LAETGGRDVKIIAKIENQEAVDNLDEIIEASD 241 (477)
T ss_pred ccCHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHH-------------HHHhCCCCceEEEeecCHHHHhHHHHHHHhcC
Confidence 3589999999999999644332 112333333222 1112 333567778999999888777666678
Q ss_pred eEEEeCCCCee-eehhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC---
Q 017962 97 NIVIDLPDWQV-IPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED--- 154 (363)
Q Consensus 97 ~vvv~~~dW~i-IPlEnliA-------~~q~~~~~l~a~-----------v~~~~eA~~~~~~LE~G~dGVvl~~~d--- 154 (363)
-+.+--.|--+ ||+|++.. .....+.-+|.. ..+-.|+--.+.+---|+|+|+|.-+.
T Consensus 242 GIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA~G 321 (477)
T COG0469 242 GIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAG 321 (477)
T ss_pred ceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhhhcC
Confidence 88886666654 78887643 222222222222 233466666777888899999999875
Q ss_pred ---HHHHHHHHHhhc
Q 017962 155 ---VKAVLALKEYFD 166 (363)
Q Consensus 155 ---~~ei~~l~~~~~ 166 (363)
.+.++-++.++.
T Consensus 322 ~yPveaV~~M~~I~~ 336 (477)
T COG0469 322 KYPVEAVATMARIAK 336 (477)
T ss_pred CCHHHHHHHHHHHHH
Confidence 356666666654
No 287
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=27.46 E-value=38 Score=34.94 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=25.7
Q ss_pred HHHHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 017962 134 AQIFLEALEQGLGGIVLKVEDVKAVLALKEY 164 (363)
Q Consensus 134 A~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~ 164 (363)
-+.+-.+||.|+|+|++.++|.+.+++|.++
T Consensus 15 k~~vt~AlEsGvd~vv~~~~~~~~~~~lg~~ 45 (354)
T PF01959_consen 15 KEVVTAALESGVDGVVVDDEDVEKVRELGRI 45 (354)
T ss_pred HHHHHHHHHcCCCEEEECHhHhhhhhccceE
Confidence 4567789999999999999988888777553
No 288
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=27.34 E-value=54 Score=33.51 Aligned_cols=117 Identities=16% Similarity=0.244 Sum_probs=63.2
Q ss_pred HHHHHHHhCccEEEEcccchhhhhhccceeeeee---eeecCC----------ccccCCCCeeEEEEEecChhhhhhhcc
Q 017962 24 VMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP---LFIKEG----------EVYDSGDRRVGSIIEVSTPQELQQLQP 90 (363)
Q Consensus 24 ~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~---l~~~~g----------~~~~~~gk~v~~~~~v~~~e~~e~~~~ 90 (363)
-.-++||.|-++++|++.-......+-.+ +++ ++..+. ..++.-|..+ .+++..+.++++.+..
T Consensus 62 ~~la~Le~g~~a~~~~SGmaAi~~~l~~l--l~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v-~~~d~~d~~~l~~~l~ 138 (386)
T PF01053_consen 62 QRLAALEGGEDALLFSSGMAAISAALLAL--LKPGDHIVASDDLYGGTYRLLEELLPRFGVEV-TFVDPTDLEALEAALR 138 (386)
T ss_dssp HHHHHHHT-SEEEEESSHHHHHHHHHHHH--S-TTBEEEEESSSSHHHHHHHHHCHHHTTSEE-EEESTTSHHHHHHHHC
T ss_pred HHHHHhhcccceeeccchHHHHHHHHHhh--cccCCceEecCCccCcchhhhhhhhcccCcEE-EEeCchhHHHHHhhcc
Confidence 34489999999999988432222212211 221 222222 2334456543 3344444555444332
Q ss_pred ccCCCceEEEeCC---CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 017962 91 ADGQAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 146 (363)
Q Consensus 91 ~~~~~~~vvv~~~---dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~d 146 (363)
. +.+.|.++.. -.+++.++.|.+.++..+ .+...|.|.=-.-..+..|+.|+|
T Consensus 139 ~--~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g-~~~~vVDnT~atp~~~~pL~~GaD 194 (386)
T PF01053_consen 139 P--NTKLVFLESPSNPTLEVPDLEAIAKLAKEHG-DILVVVDNTFATPYNQNPLELGAD 194 (386)
T ss_dssp T--TEEEEEEESSBTTTTB---HHHHHHHHHHTT-T-EEEEECTTTHTTTC-GGGGT-S
T ss_pred c--cceEEEEEcCCCcccccccHHHHHHHHHHhC-CceEEeeccccceeeeccCcCCce
Confidence 2 5677888765 578999999988776554 466667666555577888999998
No 289
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=27.02 E-value=3.7e+02 Score=22.40 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=14.8
Q ss_pred eEEEEEecCCCCeEEEEEeEec
Q 017962 290 ILVEAKTNSGDQTLYGIILQNA 311 (363)
Q Consensus 290 llIeAe~~~~~g~~~sviLQnA 311 (363)
..||++.+.+-|....+|+||=
T Consensus 4 ~VlE~~~~~g~G~vatviV~~G 25 (95)
T cd03702 4 VVIESKLDKGRGPVATVLVQNG 25 (95)
T ss_pred EEEEEEecCCCCccEEEEEEcC
Confidence 3567777655567777888773
No 290
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.71 E-value=2.2e+02 Score=27.90 Aligned_cols=85 Identities=14% Similarity=0.253 Sum_probs=51.5
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCCCC
Q 017962 246 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGE 325 (363)
Q Consensus 246 v~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~p~~~~~~ 325 (363)
|..|-|-|.| -|.+|..|+-=+.+.-. ..++---..-.|||++ . +..++++-+...+.+.|+-.+
T Consensus 163 VsTPTGSTAY--slSAGGPIv~P~~~~~~-ltPI~Ph~l~~rplVl-----~--~~~~I~i~~~~~~~~~l~~DG----- 227 (271)
T PRK01185 163 VATPTGSTSY--SSSAGGPILLPNLEGMV-ISYIAPYSSRPKSVVV-----P--SESTVEIKIAGDQSSLLILDG----- 227 (271)
T ss_pred EeCCCchHHH--HhhCCCceeCCCCCeEE-EEecccCCCCCCCEEE-----C--CCCEEEEEEcCCCCEEEEECC-----
Confidence 5678899998 47788877654444322 3344444555788865 2 234455544333345555433
Q ss_pred CCceeeeeecCCCCEEEEEecCCC
Q 017962 326 QEKAIPVTSLKVGDEVLLRVQGAA 349 (363)
Q Consensus 326 ~g~~vsVt~Lk~GD~VL~~~~~~g 349 (363)
. ....|++||+|.++..+..
T Consensus 228 --~--~~~~l~~~d~i~i~~s~~~ 247 (271)
T PRK01185 228 --Q--YEYKISKGDTVEISKSENY 247 (271)
T ss_pred --C--ceEecCCCCEEEEEECCCe
Confidence 2 3567999999999876543
No 291
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=26.58 E-value=2.2e+02 Score=26.92 Aligned_cols=127 Identities=14% Similarity=0.214 Sum_probs=67.1
Q ss_pred hhHHHHHHHhCccEEEEcccch-hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEE
Q 017962 22 KQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~-~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 100 (363)
...+..=.+.|+|.+.|..|.. ...+-+. .+++.|.+.|..+.-.+|- +.+...+...|.|++
T Consensus 71 ~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~--------------~ik~~g~k~GlalnP~Tp~--~~i~~~l~~~D~vlv 134 (220)
T PRK08883 71 DRIIPDFAKAGASMITFHVEASEHVDRTLQ--------------LIKEHGCQAGVVLNPATPL--HHLEYIMDKVDLILL 134 (220)
T ss_pred HHHHHHHHHhCCCEEEEcccCcccHHHHHH--------------HHHHcCCcEEEEeCCCCCH--HHHHHHHHhCCeEEE
Confidence 3445566678899888876521 1111111 2234566667655554432 334444556777777
Q ss_pred -----eCCCCeeee--hh---hhhhcccCCC-ceEEEEcCCHHHHHHHHHHhhcccCeEEEe-----cCCH-HHHHHHHH
Q 017962 101 -----DLPDWQVIP--AE---NIVASFQGSG-KTVFAISKTPSEAQIFLEALEQGLGGIVLK-----VEDV-KAVLALKE 163 (363)
Q Consensus 101 -----~~~dW~iIP--lE---nliA~~q~~~-~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~-----~~d~-~ei~~l~~ 163 (363)
-+.+++.|| +| .+-+..+..+ ...+.+-.... .+.+-.+.+.|+|++++- .+|+ +.++++++
T Consensus 135 MtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~ 213 (220)
T PRK08883 135 MSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRA 213 (220)
T ss_pred EEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 245777887 23 2323222211 12233333333 456668889999999764 3454 34444444
Q ss_pred hh
Q 017962 164 YF 165 (363)
Q Consensus 164 ~~ 165 (363)
.+
T Consensus 214 ~~ 215 (220)
T PRK08883 214 EL 215 (220)
T ss_pred HH
Confidence 43
No 292
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=26.56 E-value=1.6e+02 Score=28.22 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=42.7
Q ss_pred CCceEEEeCCCCeeeehhhhhhccc--CCCceEEEEcC--CHHHHHHHH-HHhhcccCeEEE-----ecCCH-HHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISK--TPSEAQIFL-EALEQGLGGIVL-----KVEDV-KAVLALK 162 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q--~~~~~l~a~v~--~~~eA~~~~-~~LE~G~dGVvl-----~~~d~-~ei~~l~ 162 (363)
.+|++=.. |. -+++.+-...+ .-+...+...+ |.+++..++ .+++.|++|+.. ..+|| ..+++|+
T Consensus 173 GAD~vKt~---~~-~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~ 248 (267)
T PRK07226 173 GADIVKTN---YT-GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAIS 248 (267)
T ss_pred CCCEEeeC---CC-CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHHH
Confidence 57888554 43 12343322222 23455666677 888887775 788999999964 44565 4556666
Q ss_pred Hhhcc
Q 017962 163 EYFDG 167 (363)
Q Consensus 163 ~~~~~ 167 (363)
.++.+
T Consensus 249 ~~v~~ 253 (267)
T PRK07226 249 AVVHE 253 (267)
T ss_pred HHHhC
Confidence 66643
No 293
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=26.53 E-value=2.1e+02 Score=24.55 Aligned_cols=40 Identities=25% Similarity=0.141 Sum_probs=28.2
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++.... ..+......+++.|+++++.+|-++.++.+.
T Consensus 75 ~~~ii~ls~-~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~ 114 (228)
T PRK11083 75 ALPVIFLTA-RSDEVDRLVGLEIGADDYVAKPFSPREVAAR 114 (228)
T ss_pred CCCEEEEEc-CCcHHHHHHHhhcCCCeEEECCCCHHHHHHH
Confidence 345555443 3344556788999999999999998877543
No 294
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.46 E-value=2.1e+02 Score=28.47 Aligned_cols=85 Identities=15% Similarity=0.240 Sum_probs=50.7
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCCCC
Q 017962 246 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGE 325 (363)
Q Consensus 246 v~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~p~~~~~~ 325 (363)
|..|-|-|.| -|.+|..|+-=+.++-.-+ ++=--..-.||+++ . +..++.+-+.+...+.|.-.+
T Consensus 186 VsTPTGSTAY--slSAGGPIv~P~~~~~~it-PI~Phsl~~rplVl-----~--~~~~i~i~~~~~~~~~l~~DG----- 250 (296)
T PRK04539 186 VSTPTGSTAY--SLAAGGPIMQAGLHAFTLV-PICPQSMTNRPIAI-----P--DTSEIEILVTQGGDARVHFDG----- 250 (296)
T ss_pred EECCCcHHHH--HhhCCCceeCCCCCeEEEE-ecCcCcccCCCEEE-----C--CCCEEEEEEcCCCcEEEEEcC-----
Confidence 6678888988 4778887665444432222 22212234688876 2 234455544444556665533
Q ss_pred CCceeeeeecCCCCEEEEEecCCC
Q 017962 326 QEKAIPVTSLKVGDEVLLRVQGAA 349 (363)
Q Consensus 326 ~g~~vsVt~Lk~GD~VL~~~~~~g 349 (363)
. ....|++||+|.++.....
T Consensus 251 --~--~~~~l~~~d~i~i~~s~~~ 270 (296)
T PRK04539 251 --Q--THIDVQNLDRITIRRYRNP 270 (296)
T ss_pred --C--ceeecCCCCEEEEEECCCc
Confidence 2 3678999999999876543
No 295
>PF14031 D-ser_dehydrat: Putative serine dehydratase domain; PDB: 3LLX_A 3ANV_A 3AWO_A 3AWN_A 3ANU_A 3GWQ_A.
Probab=26.36 E-value=3.7e+02 Score=22.14 Aligned_cols=63 Identities=24% Similarity=0.292 Sum_probs=31.6
Q ss_pred EEEEEcCCcceEEEeecCCC-C-------CCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEecCCcee
Q 017962 183 TRVDVAGMGDRVCVDLCSLM-R-------PGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTC 254 (363)
Q Consensus 183 t~V~~vGmGdRVCVDtcsll-~-------~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVNAGaVHaYv~~pggkT~ 254 (363)
+.|-+..--+|+++|.-+.- . +|-|.+++. ...-+. ..+==|.++..+++
T Consensus 6 atVvS~~~~~~~iiDaG~kals~d~~~~~~g~g~v~~~-~~~~~~------------------~~seEHg~l~~~~~--- 63 (94)
T PF14031_consen 6 ATVVSRPPPGRAIIDAGSKALSSDSGPPPPGFGRVVDH-PGLEVV------------------RLSEEHGILRLPDG--- 63 (94)
T ss_dssp EEEEEEECTTEEEES--CCCC-SCCGGGGCCCEEECCC-CCEEEE------------------EE-SS-EEEE-STT---
T ss_pred EEEecccCCCEEEECCceeeeeccCCCCccCCEEEeCC-CCcEEE------------------eeecceeEEECCCC---
Confidence 34444444499999987642 2 233444442 222222 22334999999988
Q ss_pred eeeeccCCCeEEEE
Q 017962 255 YLSELKSGKEVIVV 268 (363)
Q Consensus 255 YLSEL~sG~eVLvV 268 (363)
...|+-||.|.++
T Consensus 64 -~~~~~vGd~v~ii 76 (94)
T PF14031_consen 64 -ADRLKVGDKVEII 76 (94)
T ss_dssp -GCGT-TT-EEEEE
T ss_pred -CCCCCCCCEEEEE
Confidence 3357999999875
No 296
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=26.31 E-value=53 Score=33.45 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=37.9
Q ss_pred CCCCCCCCeeeecCCc------e------eEEE-------ecCCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEEEec
Q 017962 227 SNYIASRPFRVNAGPV------H------AYVL-------VPGGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVKIES 286 (363)
Q Consensus 227 ~~Yva~RPFRVNAGaV------H------aYv~-------~pggkT~YLSEL~sG~eVLvVd~~-G~~R~~~VGRvKIE~ 286 (363)
.|.+.+|||-+---|- | .|.. -.|--|.||+.|+.||.|-+.-.. |..+ .- .-+.
T Consensus 172 lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~~~F~---lp--~~~~ 246 (406)
T cd06202 172 LPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAPSFH---LP--EDPS 246 (406)
T ss_pred CcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCCEEEEEEeeCCccC---CC--CCCC
Confidence 4667777777644442 2 1210 136678999999999999875332 2221 10 1235
Q ss_pred cceeEEEE
Q 017962 287 RPLILVEA 294 (363)
Q Consensus 287 RPLllIeA 294 (363)
+|+++|=+
T Consensus 247 ~piImIa~ 254 (406)
T cd06202 247 VPVIMVGP 254 (406)
T ss_pred CCEEEEcC
Confidence 89999854
No 297
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=26.20 E-value=2.5e+02 Score=23.82 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=38.9
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~--~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..+.++++..-... .--+++..+.. ....++... +..+......+++.|+++++.+|-+..++.+.
T Consensus 42 ~~dlvl~d~~~~~~-~g~~~~~~l~~~~~~~~iivls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~ 109 (218)
T TIGR01387 42 DYDLIILDVMLPGM-DGWQILQTLRRSGKQTPVLFLT-ARDSVADKVKGLDLGADDYLVKPFSFSELLAR 109 (218)
T ss_pred CCCEEEEeCCCCCC-CHHHHHHHHHccCCCCcEEEEE-cCCCHHHHHHHHHcCCCeEEECCCCHHHHHHH
Confidence 35667764321111 11133333332 234455544 44556667888999999999999998877543
No 298
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=26.04 E-value=1.9e+02 Score=26.12 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=46.4
Q ss_pred EEEEecChhhhhhhcccc--CCCceEEEeCCCCeeeehhhhhhcccCCCceEEE---EcCCHHHHHHHHHHhhcccCeEE
Q 017962 75 SIIEVSTPQELQQLQPAD--GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA---ISKTPSEAQIFLEALEQGLGGIV 149 (363)
Q Consensus 75 ~~~~v~~~e~~e~~~~~~--~~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a---~v~~~~eA~~~~~~LE~G~dGVv 149 (363)
..+...++++...++..+ +..+.+-+..++..-+| .+..+...-..+.. .+-+.++++ .+++.|+|+++
T Consensus 8 ~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~---~i~~l~~~~~~~~iGag~v~~~~~~~---~a~~~Ga~~i~ 81 (190)
T cd00452 8 AVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALE---AIRALRKEFPEALIGAGTVLTPEQAD---AAIAAGAQFIV 81 (190)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHH---HHHHHHHHCCCCEEEEEeCCCHHHHH---HHHHcCCCEEE
Confidence 334555677665554433 45788888666555333 45444433222332 445555555 45678999999
Q ss_pred EecCCHHHHH
Q 017962 150 LKVEDVKAVL 159 (363)
Q Consensus 150 l~~~d~~ei~ 159 (363)
+...|++-+.
T Consensus 82 ~p~~~~~~~~ 91 (190)
T cd00452 82 SPGLDPEVVK 91 (190)
T ss_pred cCCCCHHHHH
Confidence 8877776443
No 299
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=25.81 E-value=6e+02 Score=24.91 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=66.0
Q ss_pred chhHHHHHHHhCccEEEEcccc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 017962 21 SKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 94 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~ 94 (363)
++..+-.|...|+|++++--.- +++.+...++ |-. ++++|.+.+|++.+... .
T Consensus 113 d~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~l-----------------Gle--~LVEVh~~~El~~a~~~--g 171 (247)
T PRK13957 113 DEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSL-----------------GMD--VLVEVHTEDEAKLALDC--G 171 (247)
T ss_pred CHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHc-----------------CCc--eEEEECCHHHHHHHHhC--C
Confidence 3445556666999998765311 1122222222 322 67799999998886653 5
Q ss_pred CceEEEeCCCCe--eeeh---hhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEE-----ecCCHHH
Q 017962 95 AENIVIDLPDWQ--VIPA---ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVL-----KVEDVKA 157 (363)
Q Consensus 95 ~~~vvv~~~dW~--iIPl---EnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl-----~~~d~~e 157 (363)
++.+-|+-+|-+ .+.+ ++|...+.. +.-+++ ..++.+|++.+.. ++||||+ +.+||.+
T Consensus 172 a~iiGINnRdL~t~~vd~~~~~~L~~~ip~-~~~~IsESGI~t~~d~~~l~~----~~davLvG~~lm~~~d~~~ 241 (247)
T PRK13957 172 AEIIGINTRDLDTFQIHQNLVEEVAAFLPP-NIVKVGESGIESRSDLDKFRK----LVDAALIGTYFMEKKDIRK 241 (247)
T ss_pred CCEEEEeCCCCccceECHHHHHHHHhhCCC-CcEEEEcCCCCCHHHHHHHHH----hCCEEEECHHHhCCCCHHH
Confidence 677888877654 3333 445555432 223343 4678899888653 3999987 4455543
No 300
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=25.71 E-value=4.1e+02 Score=26.46 Aligned_cols=115 Identities=12% Similarity=0.084 Sum_probs=60.1
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCceEEE
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~~~~~~~vvv 100 (363)
-..+..|-|+|+|++++++=-.+...++..... ..|-....++.-+ +.+-++.++.....-=|.+-
T Consensus 112 e~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~-------------~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs 178 (265)
T COG0159 112 EKFLRRAKEAGVDGLLVPDLPPEESDELLKAAE-------------KHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVS 178 (265)
T ss_pred HHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHH-------------HcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEe
Confidence 346889999999999998522333333333321 1122222222333 34555555544322222222
Q ss_pred e--CCCCeee---ehhhhhhcccCCC-ceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 101 D--LPDWQVI---PAENIVASFQGSG-KTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 101 ~--~~dW~iI---PlEnliA~~q~~~-~~l~--a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
. .++=+.- ++..+|..+..-. ..++ -.+++.++|+.+.++ +|||++-+.
T Consensus 179 ~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~----ADGVIVGSA 235 (265)
T COG0159 179 RMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA----ADGVIVGSA 235 (265)
T ss_pred cccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh----CCeEEEcHH
Confidence 1 1122221 3667777665422 2233 357888888776655 999999875
No 301
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=25.66 E-value=43 Score=34.14 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=29.4
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 250 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 250 ggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
|--|.||.+|+.||+|.+-..-|+.-.. - .-..+|++||=+
T Consensus 183 G~~S~~L~~Lk~Gd~V~v~GP~G~~fll--p--~~~~~~iImIAg 223 (367)
T PLN03115 183 GVCSNFLCDLKPGAEVKITGPVGKEMLM--P--KDPNATIIMLAT 223 (367)
T ss_pred eehHhhHhhCCCcCEEEEEeecCCceeC--C--cCCCCCEEEEeC
Confidence 4457899999999999998888865211 1 123578888743
No 302
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=25.55 E-value=82 Score=31.38 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=36.5
Q ss_pred hhhhhhhcccc-CCCceEEEeCC-CCeeeehhhhhhcccCCC--ceEEE-EcCCHHHHHHHHHHhhcccCeEEE
Q 017962 82 PQELQQLQPAD-GQAENIVIDLP-DWQVIPAENIVASFQGSG--KTVFA-ISKTPSEAQIFLEALEQGLGGIVL 150 (363)
Q Consensus 82 ~e~~e~~~~~~-~~~~~vvv~~~-dW~iIPlEnliA~~q~~~--~~l~a-~v~~~~eA~~~~~~LE~G~dGVvl 150 (363)
+++.+++.... ...+.+++++. ... -.+.++|.++.... ..|++ .+.+.++|+. +++.|+|+|++
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~-~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~---l~~aGaD~I~v 162 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHS-VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARD---LIDAGADGVKV 162 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCc-HHHHHHHHHHHHHCCCceEEECCCCCHHHHHH---HHhcCCCEEEE
Confidence 45545544433 34788888653 222 12344555544332 45554 5666666654 55789999997
No 303
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=25.53 E-value=3.4e+02 Score=25.00 Aligned_cols=135 Identities=14% Similarity=0.058 Sum_probs=62.4
Q ss_pred EEEEEe--CchhHHHHHHHhCccEEEEccc---chhhhhhccce----eeeeeeeecCCccccCCCCeeEEEE--EecCh
Q 017962 14 RVWIWT--ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTI----ALLDPLFIKEGEVYDSGDRRVGSII--EVSTP 82 (363)
Q Consensus 14 ~vWvw~--~~K~~vt~AlEsG~~~~v~~~~---~~~~~~~~~~i----~~i~~l~~~~g~~~~~~gk~v~~~~--~v~~~ 82 (363)
.+|+=- ++.+-+..+++.|++.+++... +.++.+++.+. ..+-.+-+.++.+ .++ -.+.... +.+.-
T Consensus 76 pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~-~~~-~~v~~~~~~~~~~~ 153 (232)
T TIGR03572 76 PLTVGGGIRSLEDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELD-GSD-YKVYSDNGRRATGR 153 (232)
T ss_pred CEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCC-CCc-EEEEECCCcccCCC
Confidence 356632 4666777789999999998763 23444444432 1121222222210 000 0111100 01111
Q ss_pred hhhhhhccc-cCCCceEEEeCCCC----eeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 017962 83 QELQQLQPA-DGQAENIVIDLPDW----QVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 83 e~~e~~~~~-~~~~~~vvv~~~dW----~iIPlEnliA~~q~~~~~l~a~--v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
+.++.+... ...++.+++...+= +=..+|.+-+-.+..+..|++. ++|.++++.++ .+.|+|||++.+
T Consensus 154 ~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l--~~~gadgV~vg~ 228 (232)
T TIGR03572 154 DPVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVA--LEAGASAVAAAS 228 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHH--HHcCCCEEEEeh
Confidence 111111111 12467777765211 1122333322222234455554 67888887644 345999999865
No 304
>PRK06354 pyruvate kinase; Provisional
Probab=25.51 E-value=1.7e+02 Score=32.05 Aligned_cols=62 Identities=13% Similarity=0.210 Sum_probs=47.8
Q ss_pred CCceEEEeCC-C-CeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017962 94 QAENIVIDLP-D-WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 156 (363)
Q Consensus 94 ~~~~vvv~~~-d-W~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ 156 (363)
..|++-+.|- + =.|.-+-+++.+..+.+..+++...+.+--+-+-++++. +|||++.+.|.+
T Consensus 191 ~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~-~DgImVaRGDLg 254 (590)
T PRK06354 191 GVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILEL-CDGLMVARGDLG 254 (590)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh-cCEEEEccchhh
Confidence 5788887763 2 225555677744335678899999999999999999999 999999999853
No 305
>PRK04980 hypothetical protein; Provisional
Probab=25.45 E-value=54 Score=28.23 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.1
Q ss_pred eeecCCCCEEEEEecCCCcccce
Q 017962 332 VTSLKVGDEVLLRVQGAARHTGI 354 (363)
Q Consensus 332 Vt~Lk~GD~VL~~~~~~gRHfG~ 354 (363)
-..++|||.+.+++.+++|.|+.
T Consensus 29 e~~~~~G~~~~V~~~e~g~~~c~ 51 (102)
T PRK04980 29 ESHFKPGDVLRVGTFEDDRYFCT 51 (102)
T ss_pred ccCCCCCCEEEEEECCCCcEEEE
Confidence 34689999999999999999974
No 306
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=25.32 E-value=1.6e+02 Score=31.35 Aligned_cols=66 Identities=12% Similarity=0.299 Sum_probs=38.2
Q ss_pred Chhhhhhhcccc-CCCceEEEeCC-CCeeeehhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEEE
Q 017962 81 TPQELQQLQPAD-GQAENIVIDLP-DWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVL 150 (363)
Q Consensus 81 ~~e~~e~~~~~~-~~~~~vvv~~~-dW~iIPlEnliA~~q~~--~~~l~a-~v~~~~eA~~~~~~LE~G~dGVvl 150 (363)
++++++++..+. +.++.++++.. +.+.-.+| .|..+... +..|++ .+.|.++|+. +.+.|+|+|.+
T Consensus 239 ~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~-~i~~ik~~~~~~~v~aG~V~t~~~a~~---~~~aGad~I~v 309 (495)
T PTZ00314 239 RPEDIERAAALIEAGVDVLVVDSSQGNSIYQID-MIKKLKSNYPHVDIIAGNVVTADQAKN---LIDAGADGLRI 309 (495)
T ss_pred CHHHHHHHHHHHHCCCCEEEEecCCCCchHHHH-HHHHHHhhCCCceEEECCcCCHHHHHH---HHHcCCCEEEE
Confidence 456666655554 35888888753 22322222 34444332 345555 5666666664 55789999975
No 307
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=25.29 E-value=5.7e+02 Score=24.23 Aligned_cols=135 Identities=11% Similarity=0.144 Sum_probs=68.0
Q ss_pred EeCchhHHHHHHHhCccEEEEcccch--hhhhhccceee--------------eeeeee-cCC---------ccccC-CC
Q 017962 18 WTESKQVMTAAVERGWNTFVFLSENQ--QLAIDWSTIAL--------------LDPLFI-KEG---------EVYDS-GD 70 (363)
Q Consensus 18 w~~~K~~vt~AlEsG~~~~v~~~~~~--~~~~~~~~i~~--------------i~~l~~-~~g---------~~~~~-~g 70 (363)
|+.+.+.+..+-++||.++++..=.. ...+.--++.. ++-.-+ +.| ...+. .+
T Consensus 19 ~~~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~~~~~i~~~~~~~~~ 98 (289)
T cd02810 19 LLKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDVWLQDIAKAKKEFPG 98 (289)
T ss_pred CCCCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHHHHHHHHHHHhccCC
Confidence 45678888888899999988874211 11111112222 222111 111 01122 35
Q ss_pred CeeEEEEEecChhhhhhhccccCC--CceEEEeCCCCeee----------ehhhhhhcccCC-CceEEEEcC---CHHHH
Q 017962 71 RRVGSIIEVSTPQELQQLQPADGQ--AENIVIDLPDWQVI----------PAENIVASFQGS-GKTVFAISK---TPSEA 134 (363)
Q Consensus 71 k~v~~~~~v~~~e~~e~~~~~~~~--~~~vvv~~~dW~iI----------PlEnliA~~q~~-~~~l~a~v~---~~~eA 134 (363)
+++.+.+--.++++..+.+..+.. ++.+-++..-...- .+..++.++... +--|+.... +.+|.
T Consensus 99 ~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~ 178 (289)
T cd02810 99 QPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDI 178 (289)
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHH
Confidence 555554444467777666665433 67888876533321 133455554432 222444333 33344
Q ss_pred HHHHH-HhhcccCeEEEec
Q 017962 135 QIFLE-ALEQGLGGIVLKV 152 (363)
Q Consensus 135 ~~~~~-~LE~G~dGVvl~~ 152 (363)
...+. +.+.|+|+|.+..
T Consensus 179 ~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 179 VELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHHHHHHHHcCCCEEEEEc
Confidence 44443 4567889888864
No 308
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.23 E-value=4.3e+02 Score=24.17 Aligned_cols=77 Identities=13% Similarity=0.026 Sum_probs=46.3
Q ss_pred EEEecChhhhhhhcccc--CCCceEEEeCCCCeeeehhhhhhcccCCC--ceE-EEEcCCHHHHHHHHHHhhcccCeEEE
Q 017962 76 IIEVSTPQELQQLQPAD--GQAENIVIDLPDWQVIPAENIVASFQGSG--KTV-FAISKTPSEAQIFLEALEQGLGGIVL 150 (363)
Q Consensus 76 ~~~v~~~e~~e~~~~~~--~~~~~vvv~~~dW~iIPlEnliA~~q~~~--~~l-~a~v~~~~eA~~~~~~LE~G~dGVvl 150 (363)
.+...++++...++..+ +....+-+..++++- .++++.+.... ..+ ...+-+.++++.+ ++.|+|||++
T Consensus 17 v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~---~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A---~~~gAdgv~~ 90 (187)
T PRK07455 17 VIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQP---AELISQLREKLPECIIGTGTILTLEDLEEA---IAAGAQFCFT 90 (187)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCH---HHHHHHHHHhCCCcEEeEEEEEcHHHHHHH---HHcCCCEEEC
Confidence 34555666655544432 457778787766643 34443333222 222 2355566888877 5579999999
Q ss_pred ecCCHHHH
Q 017962 151 KVEDVKAV 158 (363)
Q Consensus 151 ~~~d~~ei 158 (363)
.-.|++.+
T Consensus 91 p~~~~~~~ 98 (187)
T PRK07455 91 PHVDPELI 98 (187)
T ss_pred CCCCHHHH
Confidence 88887654
No 309
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.18 E-value=1.3e+02 Score=27.93 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=30.5
Q ss_pred hhhhhcccCCCceEE-EEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHH
Q 017962 111 ENIVASFQGSGKTVF-AISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL 159 (363)
Q Consensus 111 EnliA~~q~~~~~l~-a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~ 159 (363)
++++..++..+-.++ -.+++.++++.+ ++.|+|||+ ||.|+...
T Consensus 202 ~~~v~~~~~~G~~v~vWTVN~~~~~~~l---~~~gVdgIi--TD~p~~~~ 246 (249)
T cd08561 202 PRFVRAAHAAGLEVHVWTVNDPAEMRRL---LDLGVDGII--TDRPDLLL 246 (249)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHHHHHH---HhcCCCEEE--cCCHHHHH
Confidence 466777766666665 456778777765 577999976 67777553
No 310
>PRK04132 replication factor C small subunit; Provisional
Probab=24.90 E-value=1.6e+02 Score=33.66 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=46.7
Q ss_pred CCeEEEEcCCCCeeEEeeeeE-EEeccceeEEEEEecCCCCeEEEEEeEecce-EEEecCCCCCCCCCceeeeeecCCCC
Q 017962 262 GKEVIVVDQKGRQRTAVVGRV-KIESRPLILVEAKTNSGDQTLYGIILQNAET-VALVSPCKGTGEQEKAIPVTSLKVGD 339 (363)
Q Consensus 262 G~eVLvVd~~G~~R~~~VGRv-KIE~RPLllIeAe~~~~~g~~~sviLQnAET-IrLv~p~~~~~~~g~~vsVt~Lk~GD 339 (363)
|-.|+.+|.+|+-+...+.++ |....|++.|..+. |..+.+. ++| +....++|. -..+..-+|++||
T Consensus 89 ~i~V~slde~gkl~~~~v~~v~k~g~~~v~rI~t~~----G~el~~T---~~Hp~lv~~~~g~----~~W~~a~eL~~GD 157 (846)
T PRK04132 89 GLKVLGIDEDGKLREFEVQYVYKDKTNRLIKIKTRL----GRELKVT---PYHPLLVNRKNGE----IKWVKAEELKPGD 157 (846)
T ss_pred cceEEeecCCCceeecchhhhhhcCCceEEEEEeCC----CcEEEec---CCceEEEeccCCc----eeeEEHhHcCCCC
Confidence 567999999998877655543 44567999888865 6654432 111 112224421 2467889999999
Q ss_pred EEEEE
Q 017962 340 EVLLR 344 (363)
Q Consensus 340 ~VL~~ 344 (363)
.|.+.
T Consensus 158 ~vavp 162 (846)
T PRK04132 158 KLAIP 162 (846)
T ss_pred EEEec
Confidence 99875
No 311
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=24.42 E-value=3e+02 Score=27.30 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=43.9
Q ss_pred EEEEEecChhhhhhhccccCCCceEEEeCC------CC---eeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcc
Q 017962 74 GSIIEVSTPQELQQLQPADGQAENIVIDLP------DW---QVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQG 144 (363)
Q Consensus 74 ~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~------dW---~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G 144 (363)
.++..+++.++...+... .+|.+|+.+. +. ....|...+.+.- +.-|++ +.-.-+.+-+..+|..|
T Consensus 138 ~v~~~v~s~~~A~~a~~~--G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~--~iPVia-AGGI~dg~~iaaal~lG 212 (330)
T PF03060_consen 138 KVIPQVTSVREARKAAKA--GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV--DIPVIA-AGGIADGRGIAAALALG 212 (330)
T ss_dssp EEEEEESSHHHHHHHHHT--T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH---SS-EEE-ESS--SHHHHHHHHHCT
T ss_pred ccccccCCHHHHHHhhhc--CCCEEEEeccccCCCCCccccceeeHHHHHhhhc--CCcEEE-ecCcCCHHHHHHHHHcC
Confidence 356689999886554432 5899998753 21 2344444455433 234555 66677777788899999
Q ss_pred cCeEEEecC
Q 017962 145 LGGIVLKVE 153 (363)
Q Consensus 145 ~dGVvl~~~ 153 (363)
+|||.+-|.
T Consensus 213 A~gV~~GTr 221 (330)
T PF03060_consen 213 ADGVQMGTR 221 (330)
T ss_dssp -SEEEESHH
T ss_pred CCEeecCCe
Confidence 999998653
No 312
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=24.28 E-value=2.5e+02 Score=21.13 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=29.4
Q ss_pred ceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEecCCceeeeee--ccCCCeEEEE
Q 017962 206 EGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSE--LKSGKEVIVV 268 (363)
Q Consensus 206 EGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVNAGaVHaYv~~pggkT~YLSE--L~sG~eVLvV 268 (363)
+|..+-+++.++|+|..+. . .-|..-+-|+.+ +.. +..||.|++-
T Consensus 4 ~G~Vi~~~~g~~~~V~~~~--g---------------~~~~c~~rGklr-~~~~~~~vGD~V~~~ 50 (64)
T cd04451 4 EGVVTEALPNAMFRVELEN--G---------------HEVLAHISGKMR-MNYIRILPGDRVKVE 50 (64)
T ss_pred EEEEEEEeCCCEEEEEeCC--C---------------CEEEEEECceee-cCCcccCCCCEEEEE
Confidence 5888888887888886542 1 123333556655 333 7899999887
No 313
>PRK10676 DNA-binding transcriptional regulator ModE; Provisional
Probab=24.04 E-value=6.7e+02 Score=24.30 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=56.7
Q ss_pred ccccceeeeeEEEEEEEEEcCCcceEE--EeecCC---------------CCCCceEEEeccCceEEEEeeccc---cCC
Q 017962 169 NEVSNLLSLMKATVTRVDVAGMGDRVC--VDLCSL---------------MRPGEGLLVGSFARGLFLVHSECL---ESN 228 (363)
Q Consensus 169 ~~~~~~l~L~~atVt~V~~vGmGdRVC--VDtcsl---------------l~~GEGmLVGs~s~glfLVhsEt~---e~~ 228 (363)
....+..+--+++|++|++-+.+.+|- +|.... +.+|.-+.+-=.|....|.-.+.. ..|
T Consensus 121 ~~k~SarN~l~g~V~~i~~~~~~~~v~v~l~~g~~~l~a~IT~~s~~~L~l~~G~~v~~~Ika~~V~l~~~~~~~~SarN 200 (263)
T PRK10676 121 SLQTSARNQWFGTITARDHQQVQQHVDVLLADGKTRLKVAITAQSAERLGLDEGKEVLVLIKAPWVGITQDPAVAQAADN 200 (263)
T ss_pred ccCcchhhcceeEEEEEEeCCcccEEEEEEcCCCcEEEEEeCHHHHhhcCCCCCCeEEEEEECCEEEEEcCCCCCCChhh
Confidence 345556777899999998777666654 443221 555655555555555555322110 112
Q ss_pred CCCCCCeeeecCCceeEEE--ecCCceeeee---------eccCCCeEEEEcC
Q 017962 229 YIASRPFRVNAGPVHAYVL--VPGGKTCYLS---------ELKSGKEVIVVDQ 270 (363)
Q Consensus 229 Yva~RPFRVNAGaVHaYv~--~pggkT~YLS---------EL~sG~eVLvVd~ 270 (363)
-++.+==++.-|++|+-|. +|||.+-+-. .|+.|++|.+.=+
T Consensus 201 ~l~g~V~~i~~~~~~~~V~l~l~~g~~l~A~IT~~s~~~L~L~~G~~V~a~iK 253 (263)
T PRK10676 201 QLPGTISHIERGAEQSEVLMALPDGQTLCATVPNNEAARLSLQQGDAVTAYFN 253 (263)
T ss_pred eEEEEEEEEEeCCCcEEEEEEeCCCCEEEEEecHHHHHhcCCCCCCEEEEEEE
Confidence 2222333445566666555 4677654332 3778888887644
No 314
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.87 E-value=2.3e+02 Score=28.05 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=43.6
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEE-EeEec-ceEEEecCCCCC
Q 017962 246 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGI-ILQNA-ETVALVSPCKGT 323 (363)
Q Consensus 246 v~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sv-iLQnA-ETIrLv~p~~~~ 323 (363)
|..|-|-|.| -|.+|..|+--+.+. --.++|---..-.|||++= +..++.+ +.++. ..+.|+- |
T Consensus 184 VsTPtGSTAY--slSAGGPIv~P~~~~-~~vtPi~ph~l~~rplVlp-------~~~~i~i~~~~~~~~~~~l~~-D--- 249 (305)
T PRK02645 184 VSTPTGSTAY--TMAAGGPILHPGIDA-IIVTPICPMSLSSRPIVIP-------PGSRVVIWPLGDYDLNIKLWK-D--- 249 (305)
T ss_pred EecCCChhhh--hhhcCCcccCCCCCe-EEEEecCcccccCCCEEEC-------CCCEEEEEEcCCCCCcEEEEE-C---
Confidence 4456666666 355666555333322 1122223333445788762 2233444 23433 2355544 3
Q ss_pred CCCCceeeeeecCCCCEEEEEecCC
Q 017962 324 GEQEKAIPVTSLKVGDEVLLRVQGA 348 (363)
Q Consensus 324 ~~~g~~vsVt~Lk~GD~VL~~~~~~ 348 (363)
|. ....|++||+|.++....
T Consensus 250 ---G~--~~~~l~~~~~i~i~~s~~ 269 (305)
T PRK02645 250 ---GV--LATSIWPGQRCVIQKARH 269 (305)
T ss_pred ---CC--cceecCCCCEEEEEECCC
Confidence 22 367899999998887654
No 315
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=23.85 E-value=81 Score=30.09 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=29.6
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 250 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 250 ggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
|--|.||.+|+.||.|.+-...|..-... +-..+|+++|-+
T Consensus 83 G~~S~~L~~lk~Gd~v~v~~p~G~~f~l~----~~~~~~~vlIAg 123 (267)
T cd06182 83 GVCSNFLAGLQLGAKVTVFIRPAPSFRLP----KDPTTPIIMVGP 123 (267)
T ss_pred cchhHHHhhCCCCCEEEEEEecCCcccCC----CCCCCCEEEEec
Confidence 45699999999999999999888322210 112578888865
No 316
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=23.82 E-value=70 Score=31.11 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=54.9
Q ss_pred eEEEEEEEEEcCCcc-eEEEeecC----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecC-----CceeEEE
Q 017962 178 MKATVTRVDVAGMGD-RVCVDLCS----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAG-----PVHAYVL 247 (363)
Q Consensus 178 ~~atVt~V~~vGmGd-RVCVDtcs----ll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVNAG-----aVHaYv~ 247 (363)
.+++|++++++.-.- ++.++.-. -+.||+=+.+- ... -..|||-+-.. -+.=+|.
T Consensus 103 ~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~---------~~~------~~~R~ySias~p~~~~~l~~~ik 167 (339)
T PRK07609 103 LPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFI---------LKD------GKRRSYSIANAPHSGGPLELHIR 167 (339)
T ss_pred EEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEE---------CCC------CceeeeecCCCCCCCCEEEEEEE
Confidence 467888888776432 23443221 24455433332 111 12477776433 3333343
Q ss_pred -ecCCc-eeee-eeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 248 -VPGGK-TCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 248 -~pggk-T~YL-SEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
.|+|. |.|| .+|+.||+|.+-...|+...- .-..+|+++|=+
T Consensus 168 ~~~~G~~s~~l~~~l~~G~~v~v~gP~G~~~~~-----~~~~~~ivlIag 212 (339)
T PRK07609 168 HMPGGVFTDHVFGALKERDILRIEGPLGTFFLR-----EDSDKPIVLLAS 212 (339)
T ss_pred ecCCCccHHHHHHhccCCCEEEEEcCceeEEec-----CCCCCCEEEEec
Confidence 46665 6798 589999999998888865311 123578888754
No 317
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=23.66 E-value=7.1e+02 Score=24.50 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=71.2
Q ss_pred HHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceE--------EEe-------ccCceEEEE
Q 017962 156 KAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGL--------LVG-------SFARGLFLV 220 (363)
Q Consensus 156 ~ei~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGm--------LVG-------s~s~glfLV 220 (363)
.|-.+|++++.-.. ...... ..|+|....+-..-+.+-||--+.=.--.|| ||| ++|+-+.|.
T Consensus 98 ~EN~rLr~LL~~~~-~~~~~~-i~A~Vi~r~~~~~~~~i~IdkGs~dGV~~g~~Vi~~~~GLVG~V~~V~~~~S~V~lit 175 (283)
T TIGR00219 98 QENVRLRELLNSPL-SSDEYK-ISAEVIYLNYDNYSTQVVINKGFNDGVYKDMPVIADGKGLVGKVVSVGSNTSRVLLLT 175 (283)
T ss_pred HHHHHHHHHhcCcc-cccCCc-eEEEEEEeCCCccccEEEEcCccccCCCCCCEEEcCCCceEEEEEEECCCeEEEEEEE
Confidence 46677888775432 222223 8999999999999999999977654333333 444 234444443
Q ss_pred eeccccCCCCCCCCeeeecCCceeEEEecC-Cc---e--eee---eeccCCCeEEEEcCCCCeeE-EeeeeEE
Q 017962 221 HSECLESNYIASRPFRVNAGPVHAYVLVPG-GK---T--CYL---SELKSGKEVIVVDQKGRQRT-AVVGRVK 283 (363)
Q Consensus 221 hsEt~e~~Yva~RPFRVNAGaVHaYv~~pg-gk---T--~YL---SEL~sG~eVLvVd~~G~~R~-~~VGRvK 283 (363)
+..+ .=|.++.-.-.++.+.--+ |. . .|+ +.++.||.|+.-+.+|..=. ..||+|+
T Consensus 176 d~~~-------~v~v~v~~t~~~gi~~G~~~g~~~~l~l~~~~~~~~v~~GD~VvTSGlgg~fP~Gl~VG~V~ 241 (283)
T TIGR00219 176 DYTN-------FVPAQILRSDFRGLIEGNGYGKTLEMNLVNRPAEKDIKKGDLIVTSGLGGRFPEGYPIGVVT 241 (283)
T ss_pred cCCC-------ceEEEEecCCceEEEEecCCCCCcEEEEEECCCCCCCCCCCEEEECCCCCcCCCCCEEEEEE
Confidence 3221 2244554433343333211 22 2 233 46899999999888886554 7899986
No 318
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=23.64 E-value=2.3e+02 Score=30.47 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=21.4
Q ss_pred CCCCCCeeeecCCceeEEEecCCceeeeeeccCCCeEEE
Q 017962 229 YIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIV 267 (363)
Q Consensus 229 Yva~RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLv 267 (363)
|+.-|.+||+.-|- --++.|+.|++|+.
T Consensus 64 ~~~g~~~~~~~~~~-----------~~~~~l~~g~~v~l 91 (512)
T TIGR03689 64 FTAGRRMRVTVSPN-----------VNAAELVPGQTVRL 91 (512)
T ss_pred EeCCceEEEEeCCC-----------CCHHHCCCCCEEEE
Confidence 77788888876653 23578999999986
No 319
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=23.59 E-value=1.3e+02 Score=26.13 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=28.6
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..++... ...+......+++.|+|+++.+|.++.++.+.
T Consensus 75 ~pii~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~ 113 (227)
T TIGR03787 75 LPIIFLT-ARDSDFDTVSGLRLGADDYLTKDISLPHLLAR 113 (227)
T ss_pred CCEEEEE-CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHH
Confidence 3455544 33455667788999999999999998877654
No 320
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=23.52 E-value=1.6e+02 Score=27.08 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=50.7
Q ss_pred hhhhhcccCCC--ceEEEEcCC-HHHHHHHHHHhhcccCeEEEecCCHH-------------HHHHHHHhhcccccccce
Q 017962 111 ENIVASFQGSG--KTVFAISKT-PSEAQIFLEALEQGLGGIVLKVEDVK-------------AVLALKEYFDGRNEVSNL 174 (363)
Q Consensus 111 EnliA~~q~~~--~~l~a~v~~-~~eA~~~~~~LE~G~dGVvl~~~d~~-------------ei~~l~~~~~~~~~~~~~ 174 (363)
++++..+.... .++.+-+.+ .++++.+ .+.|+|.|-+.-.-.+ .+..+.+.++..+...-.
T Consensus 54 ~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a---~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~ 130 (265)
T cd03174 54 WEVLRAIRKLVPNVKLQALVRNREKGIERA---LEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLE 130 (265)
T ss_pred HHHHHHHHhccCCcEEEEEccCchhhHHHH---HhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 44555554443 567677777 5555554 5668998876653221 233333333333333344
Q ss_pred eeeeEEEEEE--------------EEEcCCcceEEE-eecCCCCCCc
Q 017962 175 LSLMKATVTR--------------VDVAGMGDRVCV-DLCSLMRPGE 206 (363)
Q Consensus 175 l~L~~atVt~--------------V~~vGmGdRVCV-Dtcsll~~GE 206 (363)
+.+....+++ +...| -|++|+ ||...+.|.+
T Consensus 131 v~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~i~l~Dt~G~~~P~~ 176 (265)
T cd03174 131 VEGSLEDAFGCKTDPEYVLEVAKALEEAG-ADEISLKDTVGLATPEE 176 (265)
T ss_pred EEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEechhcCCcCHHH
Confidence 5555555665 33455 456665 8877777754
No 321
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=23.51 E-value=1.2e+02 Score=31.32 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=32.3
Q ss_pred CCCceEEEeC-----------CCCeeeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 93 GQAENIVIDL-----------PDWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 93 ~~~~~vvv~~-----------~dW~iIPlEnliA~~q~~~~~l~a-~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
..++.+++.. .+|. ||....+..+..|++ .+.|.++|+.+ ++.|+|||+.-
T Consensus 154 AGad~I~ihgrt~~q~~~sg~~~p~-----~l~~~i~~~~IPVI~G~V~t~e~A~~~---~~aGaDgV~~G 216 (369)
T TIGR01304 154 AGADLLVIQGTLVSAEHVSTSGEPL-----NLKEFIGELDVPVIAGGVNDYTTALHL---MRTGAAGVIVG 216 (369)
T ss_pred CCCCEEEEeccchhhhccCCCCCHH-----HHHHHHHHCCCCEEEeCCCCHHHHHHH---HHcCCCEEEEC
Confidence 4578888863 2443 444444444567776 66666666554 56899999844
No 322
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=23.43 E-value=6.4e+02 Score=26.66 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=14.1
Q ss_pred EEEEEEE-------EcCCcceEEEeec
Q 017962 180 ATVTRVD-------VAGMGDRVCVDLC 199 (363)
Q Consensus 180 atVt~V~-------~vGmGdRVCVDtc 199 (363)
++|++|+ .+.-||||.|-+-
T Consensus 305 ~~VksI~~~~~~v~~a~aG~~vai~l~ 331 (460)
T PTZ00327 305 TRIVSLFAENNELQYAVPGGLIGVGTT 331 (460)
T ss_pred EEEEEEEECCeECCEEcCCCEEEEEec
Confidence 5677765 3458999999753
No 323
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=23.30 E-value=1.9e+02 Score=26.09 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=19.4
Q ss_pred EEEEEe-CchhHHHHHHHhCccEEEEccc
Q 017962 14 RVWIWT-ESKQVMTAAVERGWNTFVFLSE 41 (363)
Q Consensus 14 ~vWvw~-~~K~~vt~AlEsG~~~~v~~~~ 41 (363)
.+++-. +..+.+..+.+.|+|++.+...
T Consensus 65 ~v~l~v~d~~~~i~~~~~~g~d~v~vh~~ 93 (220)
T PRK05581 65 DVHLMVENPDRYVPDFAKAGADIITFHVE 93 (220)
T ss_pred EEEeeeCCHHHHHHHHHHcCCCEEEEeec
Confidence 355544 3344677888999999888764
No 324
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=23.28 E-value=1.1e+02 Score=29.07 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=29.2
Q ss_pred hhhhcccCCCceEEEE-c--CCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017962 112 NIVASFQGSGKTVFAI-S--KTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 160 (363)
Q Consensus 112 nliA~~q~~~~~l~a~-v--~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~ 160 (363)
.++..++..+-.+++- + ++.++++.+ ++.|+|||+ ||.|+.+.+
T Consensus 236 ~~v~~~~~~Gl~v~~WTv~~n~~~~~~~l---~~~GVdgIi--TD~p~~~~~ 282 (286)
T cd08606 236 RLIQVVKRSGLVCVSYGVLNNDPENAKTQ---VKAGVDAVI--VDSVLAIRR 282 (286)
T ss_pred HHHHHHHHCCcEEEEECCccCCHHHHHHH---HHcCCCEEE--ECCHHHHHH
Confidence 3455555555566654 4 677777654 567999977 888887654
No 325
>PLN02929 NADH kinase
Probab=23.18 E-value=1.1e+02 Score=30.74 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=48.9
Q ss_pred EEecCCceeeeeeccCCCeEE---EEcCCCCeeEEeeeeEEEecccee--EEEEEecCCCCeEEEEEeEecceEEEecCC
Q 017962 246 VLVPGGKTCYLSELKSGKEVI---VVDQKGRQRTAVVGRVKIESRPLI--LVEAKTNSGDQTLYGIILQNAETVALVSPC 320 (363)
Q Consensus 246 v~~pggkT~YLSEL~sG~eVL---vVd~~G~~R~~~VGRvKIE~RPLl--lIeAe~~~~~g~~~sviLQnAETIrLv~p~ 320 (363)
|..|-|-|.|- |.+|..|+ -=+-+.-.++-+--.. -.|||+ +|.. +..+.+-+ +.+...+.- |
T Consensus 201 VsTpTGSTAY~--lSAGG~i~Piv~P~l~~~vltPI~Ph~--~~r~l~~~vv~~------~~~i~i~~-~~~~~~i~i-D 268 (301)
T PLN02929 201 VSTAAGSTAAM--LSAGGFPMPLLSRDLQYMVREPISPGH--PPKSLMHGFYKP------GQHMQVRW-NSRKGTIYI-D 268 (301)
T ss_pred EeCCccHHHHH--HhcCCCCCCCCCcccceEEEEeeCCCC--CCCCccccEECC------CCeEEEEE-eCCCEEEEE-C
Confidence 67788999992 34787443 2233344444433333 678884 3332 34556655 335566665 4
Q ss_pred CCCCCCCceeeeeecCCCCEEEEEecCC
Q 017962 321 KGTGEQEKAIPVTSLKVGDEVLLRVQGA 348 (363)
Q Consensus 321 ~~~~~~g~~vsVt~Lk~GD~VL~~~~~~ 348 (363)
|. .....|++||+|.++....
T Consensus 269 ------G~-~~~~~l~~gd~i~I~~s~~ 289 (301)
T PLN02929 269 ------GS-HVMHSIKLGDTIEISSDAP 289 (301)
T ss_pred ------CC-cceEecCCCCEEEEEECCC
Confidence 21 1345699999999986543
No 326
>PLN02252 nitrate reductase [NADPH]
Probab=23.15 E-value=3.4e+02 Score=31.15 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=60.4
Q ss_pred eEEEEEEEEEcCCcc-eEEEeecC-----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEe---
Q 017962 178 MKATVTRVDVAGMGD-RVCVDLCS-----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLV--- 248 (363)
Q Consensus 178 ~~atVt~V~~vGmGd-RVCVDtcs-----ll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVNAGaVHaYv~~--- 248 (363)
.+++|++++++.-.= +..+.+-+ -+.+|+=+.|.-. ...+....+|..+.+-. .-|-+.=.|..
T Consensus 635 ~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~------~~g~~~~R~YSpaS~~~-~~g~lel~VK~~~~ 707 (888)
T PLN02252 635 IPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCAT------INGKLCMRAYTPTSSDD-EVGHFELVIKVYFK 707 (888)
T ss_pred EEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEe------cCCeEEEeeeEecccCC-CCCEEEEEEEEEec
Confidence 468899999886443 33344322 2445554443311 11222234554332210 12334444433
Q ss_pred -------c-CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEe-----ccceeEEEE
Q 017962 249 -------P-GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE-----SRPLILVEA 294 (363)
Q Consensus 249 -------p-ggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE-----~RPLllIeA 294 (363)
| |--|+||..|+.||+|.+-..-|+..-.-=|+..+. .||++||=+
T Consensus 708 ~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAG 766 (888)
T PLN02252 708 NVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAG 766 (888)
T ss_pred cccCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccccccCceEEEEec
Confidence 2 668899999999999999999997532111223343 478888855
No 327
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.97 E-value=1.5e+02 Score=27.67 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=29.8
Q ss_pred hhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHH
Q 017962 111 ENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL 159 (363)
Q Consensus 111 EnliA~~q~~~~~l~a-~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~ 159 (363)
..++..++..+-++++ .+++.++++.+ ++.|+|||+ ||.|+.+.
T Consensus 208 ~~~v~~~~~~g~~v~~wTvn~~~~~~~l---~~~Gvd~Ii--TD~p~~~~ 252 (256)
T cd08601 208 PWMVHLIHKKGLLVHPYTVNEKADMIRL---INWGVDGMF--TNYPDRLK 252 (256)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHHHHHH---HhcCCCEEE--eCCHHHHH
Confidence 4677777777666655 46667666644 567999977 66676554
No 328
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.91 E-value=2.7e+02 Score=27.21 Aligned_cols=81 Identities=23% Similarity=0.261 Sum_probs=44.7
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEecc-------ceeEEEEEecCCCCeEEEEEeEecceEEEec
Q 017962 246 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESR-------PLILVEAKTNSGDQTLYGIILQNAETVALVS 318 (363)
Q Consensus 246 v~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~R-------PLllIeAe~~~~~g~~~sviLQnAETIrLv~ 318 (363)
|.+|-|.|.| -|.+|..|+-=+.+.-.=+ ++= -+-.| ||++= +...+.+-+.+.+.+.|+-
T Consensus 153 VsTptGSTAY--slSaGGPIv~P~~~~~~lt-PI~--~l~~r~~~~~~~plVl~-------~~~~I~i~~~~~~~~~l~~ 220 (265)
T PRK04885 153 VSTPTGSTAY--NKSLGGAVLHPSIEALQLT-EIA--SINNRVFRTLGSPLILP-------KHHTITLKPVNDDDYQITV 220 (265)
T ss_pred EECCCChHHH--HhhCCCceeCCCCCeEEEE-eec--cccccccccCCCCEEEC-------CCCEEEEEEcCCCcEEEEE
Confidence 4678888888 3667776654333221111 111 23344 88762 2344555444444455554
Q ss_pred CCCCCCCCCceeeeeecCCCCEEEEEecCC
Q 017962 319 PCKGTGEQEKAIPVTSLKVGDEVLLRVQGA 348 (363)
Q Consensus 319 p~~~~~~~g~~vsVt~Lk~GD~VL~~~~~~ 348 (363)
| |. . .+|++||+|.++....
T Consensus 221 -D------G~--~-~~l~~~d~i~i~~s~~ 240 (265)
T PRK04885 221 -D------HL--T-IKHKNVKSIEYRVANE 240 (265)
T ss_pred -C------CC--E-eecCCCCEEEEEECCc
Confidence 4 23 2 5799999999887653
No 329
>TIGR03684 arCOG00985 arCOG04150 universal archaeal PUA-domain protein. This universal archaeal protein contains a domain possibly associated with RNA binding (pfam01472, TIGR00451).
Probab=22.79 E-value=1.2e+02 Score=26.65 Aligned_cols=53 Identities=26% Similarity=0.427 Sum_probs=39.4
Q ss_pred eeeecCCce-----eEEEecCCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEEEecccee
Q 017962 235 FRVNAGPVH-----AYVLVPGGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVKIESRPLI 290 (363)
Q Consensus 235 FRVNAGaVH-----aYv~~pggkT~YLSEL~sG~eVLvVd~~-G~~R~~~VGRvKIE~RPLl 290 (363)
.-|+.|++. |-++.|| =+.+=.+++.||.|.|++.+ | +..-||++++-..-|.
T Consensus 72 v~Vd~~a~~~l~~Ga~lm~pG-V~~~~~~~~~Gd~V~I~~~~~~--~~vavG~a~~ss~ei~ 130 (150)
T TIGR03684 72 VVVDEGAVKFIINGADIMAPG-IVSADPSIKEGDIVFVVDETHR--KPLAVGIALMDAEEME 130 (150)
T ss_pred EEECccHHHHHhcCcccccCc-eecCCCCCCCCCEEEEEECCCC--eEEEEEEEeeCHHHHh
Confidence 667777665 4455544 34555689999999999976 5 5689999999887764
No 330
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=22.73 E-value=7e+02 Score=25.66 Aligned_cols=122 Identities=17% Similarity=0.105 Sum_probs=75.0
Q ss_pred EEEEEeCchhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC
Q 017962 14 RVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 93 (363)
Q Consensus 14 ~vWvw~~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~ 93 (363)
+|-..+.+.+-...|.+-|+|.++... +.+..+.+..+ ++ +++..+. +.+++.....+.
T Consensus 192 ~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~~--~d-----------------~ii~tv~-~~~~~~~l~~l~ 250 (339)
T COG1064 192 EVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKEI--AD-----------------AIIDTVG-PATLEPSLKALR 250 (339)
T ss_pred eEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHhh--Cc-----------------EEEECCC-hhhHHHHHHHHh
Confidence 566678888888899999999888755 44444444432 11 2333444 788888877787
Q ss_pred CCceEEEeCCCC----eeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHh-hcccCeEEEecCCHHHHH
Q 017962 94 QAENIVIDLPDW----QVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEAL-EQGLGGIVLKVEDVKAVL 159 (363)
Q Consensus 94 ~~~~vvv~~~dW----~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~L-E~G~dGVvl~~~d~~ei~ 159 (363)
....+++.+..- ..+|+-++|.. ...=.-..+.+..|.+.+|.-. |.++.=.+...-.+++|.
T Consensus 251 ~~G~~v~vG~~~~~~~~~~~~~~li~~---~~~i~GS~~g~~~d~~e~l~f~~~g~Ikp~i~e~~~l~~in 318 (339)
T COG1064 251 RGGTLVLVGLPGGGPIPLLPAFLLILK---EISIVGSLVGTRADLEEALDFAAEGKIKPEILETIPLDEIN 318 (339)
T ss_pred cCCEEEEECCCCCcccCCCCHHHhhhc---CeEEEEEecCCHHHHHHHHHHHHhCCceeeEEeeECHHHHH
Confidence 777777766652 33667777764 2222333456677777777654 445555544455555553
No 331
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=22.72 E-value=2.4e+02 Score=24.48 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=38.8
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 162 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~--~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~ 162 (363)
..+.++++..-... .--+++..++. ....++... ...+......+++.|+|+++.+|-++.++.+.-
T Consensus 44 ~~dlvild~~~~~~-~g~~~~~~lr~~~~~~pii~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i 112 (227)
T PRK09836 44 DYDLIILDIMLPDV-NGWDIVRMLRSANKGMPILLLT-ALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 (227)
T ss_pred CCCEEEEECCCCCC-CHHHHHHHHHhcCCCCCEEEEE-cCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 35667774322111 11223333332 234455443 334556677899999999999999988775443
No 332
>PLN02363 phosphoribosylanthranilate isomerase
Probab=22.63 E-value=7.2e+02 Score=24.25 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=57.0
Q ss_pred CchhHHHHHHHhCcc--EEEEcccc-----hhhhhhccceeeeeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccc
Q 017962 20 ESKQVMTAAVERGWN--TFVFLSEN-----QQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPA 91 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~--~~v~~~~~-----~~~~~~~~~i~~i~~l~~~~g~~~~~~-gk~v~~~~~v~~~e~~e~~~~~ 91 (363)
.+.+-+..|.+.|+| +|||.+.. .+.++++.+. + ++. -+.|+++ .=.+++++..++..
T Consensus 55 t~~eda~~a~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~--l-----------~~~~~~~VgVf-v~~~~~~I~~~~~~ 120 (256)
T PLN02363 55 TSARDAAMAVEAGADFIGMILWPKSKRSISLSVAKEISQV--A-----------REGGAKPVGVF-VDDDANTILRAADS 120 (256)
T ss_pred CcHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHh--c-----------cccCccEEEEE-eCCCHHHHHHHHHh
Confidence 578889999999999 58875543 2444554432 1 111 2345553 22345554444443
Q ss_pred cCCCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcC--CHHHHHHHHHH-hhcccCeEEEecC
Q 017962 92 DGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISK--TPSEAQIFLEA-LEQGLGGIVLKVE 153 (363)
Q Consensus 92 ~~~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~--~~~eA~~~~~~-LE~G~dGVvl~~~ 153 (363)
. ..+.|-+++.-. ...++.+.. ..+++..++ +..+.-..+.. .+..+|.+||++.
T Consensus 121 ~-~ld~VQLHG~e~-----~~~~~~l~~-~~~iikai~v~~~~~~~~~~~~~~~~~~D~~LlDs~ 178 (256)
T PLN02363 121 S-DLELVQLHGNGS-----RAAFSRLVR-ERKVIYVLNANEDGKLLNVVPEEDCHLADWILVDSA 178 (256)
T ss_pred c-CCCEEEECCCCC-----HHHHHHhhc-CCcEEEEEEECchHHHHHHHHhhccccCCEEEEeCC
Confidence 3 457888876421 122333321 123443332 22221111111 1235899999975
No 333
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=22.48 E-value=1.1e+02 Score=22.21 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=23.4
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEE
Q 017962 250 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKI 284 (363)
Q Consensus 250 ggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKI 284 (363)
.-+.+||+.++.||.+.+ +++..-+||-++
T Consensus 35 ~~~i~f~~p~~~gd~l~~-----~~~v~~~g~~~~ 64 (79)
T PF03061_consen 35 ELSIDFLRPVRPGDTLRV-----EARVVRVGRKSF 64 (79)
T ss_dssp EEEEEESS-BBTTSEEEE-----EEEEEEEESSEE
T ss_pred EEEEEEccccCCCeEEEE-----EEEEEEECCEEE
Confidence 678899999999999988 567777776553
No 334
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=22.44 E-value=66 Score=33.15 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=40.7
Q ss_pred CCCCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEe
Q 017962 230 IASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKT 296 (363)
Q Consensus 230 va~RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~ 296 (363)
+|+-|||.- -.-||-..+|.=-|++||.|+|...-|+. -.|=..|||+.|=.-+
T Consensus 232 IAtPPp~~~-------~~PpG~mSSyi~sLKpGDKvtisGPfGEf------FaKdtdaemvFigGGA 285 (410)
T COG2871 232 IATPPPRNP-------DAPPGQMSSYIWSLKPGDKVTISGPFGEF------FAKDTDAEMVFIGGGA 285 (410)
T ss_pred eccCCCCCC-------CCCccceeeeEEeecCCCeEEEeccchhh------hhccCCCceEEEecCc
Confidence 455577763 22366777788889999999999999987 5677789998886543
No 335
>PLN02623 pyruvate kinase
Probab=22.33 E-value=1.1e+02 Score=33.73 Aligned_cols=61 Identities=8% Similarity=0.094 Sum_probs=49.5
Q ss_pred CCceEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017962 94 QAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 156 (363)
Q Consensus 94 ~~~~vvv~~~--dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ 156 (363)
..|++-+.|- -=.|..+-++++.. +.+..|++...+.+--+-.-++++ |+|||++.+.|.+
T Consensus 291 ~vD~ialSFVr~a~DV~~~r~~l~~~-~~~~~iiakIEt~eaVeNldeIl~-g~DgImIgrgDLg 353 (581)
T PLN02623 291 KVDFYAVSFVKDAQVVHELKDYLKSC-NADIHVIVKIESADSIPNLHSIIT-ASDGAMVARGDLG 353 (581)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHc-CCcceEEEEECCHHHHHhHHHHHH-hCCEEEECcchhh
Confidence 4778877764 22466777888774 456789999999999999999999 9999999999864
No 336
>PRK08187 pyruvate kinase; Validated
Probab=22.32 E-value=2.2e+02 Score=30.52 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=72.5
Q ss_pred CchhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC----
Q 017962 20 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ---- 94 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~---- 94 (363)
.+++-+..+++ ++|.|.++. ++++.+..+..+- . -.++ ...+.+..+..|.+++-++.+..-...
T Consensus 313 kD~~DL~f~~~-~vD~I~lSfV~saeDV~~l~~~L--~---~~~~----~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~~ 382 (493)
T PRK08187 313 KDRADLDFVAR-HADLVGYSFVQSPGDVEALQAAL--A---ARRP----DDWRKLGLVLKIETPRAVANLPELIVQAAGR 382 (493)
T ss_pred hHHHHHHHHHh-cCCEEEECCCCCHHHHHHHHHHH--H---HhCC----CCCCCCeEEEEECCHHHHHHHHHHHHHhCcC
Confidence 45777888888 799988875 2333333333220 0 0000 001345677889998888776655422
Q ss_pred -CceEEEeCCC------Ceeeeh--hhhhhcccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017962 95 -AENIVIDLPD------WQVIPA--ENIVASFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED 154 (363)
Q Consensus 95 -~~~vvv~~~d------W~iIPl--EnliA~~q~~~~~l~a-----------~v~~~~eA~~~~~~LE~G~dGVvl~~~d 154 (363)
..-+++-..| ++-.|. +.||.+....+.-+|. ...|-.|+--++.+ .|+|+|+|....
T Consensus 383 ~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PTRAEvtDvAna--dgaDavMLs~G~ 460 (493)
T PRK08187 383 QPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPSRAEMTDAAMA--ARAECVMLNKGP 460 (493)
T ss_pred CCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCchHHHHHHHhh--cCCCEEeecCCC
Confidence 2366664444 333332 2233333333323332 12233444444443 899999999554
Q ss_pred --HHHHHHHHHhhcc
Q 017962 155 --VKAVLALKEYFDG 167 (363)
Q Consensus 155 --~~ei~~l~~~~~~ 167 (363)
.+.|+-|.+++.+
T Consensus 461 ypveaV~~l~~I~~~ 475 (493)
T PRK08187 461 YLVEAVTFLDDLLAR 475 (493)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3677777777644
No 337
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=22.29 E-value=6.3e+02 Score=27.47 Aligned_cols=137 Identities=10% Similarity=0.085 Sum_probs=72.0
Q ss_pred CchhHHHHHHHhCccEEEEcccch-hhhhhccc----------------eeeeeeeeecCCc--------cccCCCCeeE
Q 017962 20 ESKQVMTAAVERGWNTFVFLSENQ-QLAIDWST----------------IALLDPLFIKEGE--------VYDSGDRRVG 74 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~~~-~~~~~~~~----------------i~~i~~l~~~~g~--------~~~~~gk~v~ 74 (363)
........+.+.|.+.++..+-.. ++...+.. ....+.++++|.. .+...|-.+.
T Consensus 616 ~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~ 695 (919)
T PRK11107 616 HEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPCHHKQPPLLPPTDESRLPLTVMAVDDNPANLKLIGALLEEQVEHVV 695 (919)
T ss_pred cchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhhcccccccccccccccCCCeEEEEeCCHHHHHHHHHHHHHcCCEEE
Confidence 346667788999999988776442 22222211 1112345566652 2344454322
Q ss_pred EEEEecChhhhhhhccccCCCceEEEeCCCC--eeeehhhhhhcc-cCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 75 SIIEVSTPQELQQLQPADGQAENIVIDLPDW--QVIPAENIVASF-QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 75 ~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW--~iIPlEnliA~~-q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
...+.++.-.... ....+.++++..-+ .-+-+-..+.+. ......+++...+ ........+++.|+|+++.+
T Consensus 696 ---~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pii~lt~~-~~~~~~~~~~~~G~~~~l~K 770 (919)
T PRK11107 696 ---LCDSGHQAVEQAK-QRPFDLILMDIQMPGMDGIRACELIRQLPHNQNTPIIAVTAH-AMAGERERLLSAGMDDYLAK 770 (919)
T ss_pred ---EECCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCEEEEeCC-CCHHHHHHHHHcCCCeEeeC
Confidence 3445443222221 22467777743321 112121222221 1223456665544 33455678899999999999
Q ss_pred cCCHHHHHHH
Q 017962 152 VEDVKAVLAL 161 (363)
Q Consensus 152 ~~d~~ei~~l 161 (363)
|-++.++...
T Consensus 771 P~~~~~L~~~ 780 (919)
T PRK11107 771 PIDEAMLKQV 780 (919)
T ss_pred CCCHHHHHHH
Confidence 9998877543
No 338
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=22.26 E-value=82 Score=30.20 Aligned_cols=35 Identities=37% Similarity=0.663 Sum_probs=23.8
Q ss_pred eeEEEecCC--ceeeee--eccCCCeEEEEc---CCCCeeEE
Q 017962 243 HAYVLVPGG--KTCYLS--ELKSGKEVIVVD---QKGRQRTA 277 (363)
Q Consensus 243 HaYv~~pgg--kT~YLS--EL~sG~eVLvVd---~~G~~R~~ 277 (363)
++|+....| .|.||+ .+..|+.||+|| ..|.|-.+
T Consensus 153 ~~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG~Tl~~ 194 (238)
T PRK08558 153 EEYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGETQRA 194 (238)
T ss_pred EEeeccCCCceeEEEecHHHcCCcCEEEEEecccccCHHHHH
Confidence 346544334 367776 688999999999 66766443
No 339
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=22.20 E-value=2.3e+02 Score=29.44 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=21.8
Q ss_pred EEE----EeCchhHHHHHHHhCccEEEEcc
Q 017962 15 VWI----WTESKQVMTAAVERGWNTFVFLS 40 (363)
Q Consensus 15 vWv----w~~~K~~vt~AlEsG~~~~v~~~ 40 (363)
||+ ++...+.+..|.+.||-++|...
T Consensus 24 ~i~ASgp~t~~~e~~~~~~~~g~GAVV~KT 53 (385)
T PLN02495 24 FVIGSGPPGTNYTVMKRAFDEGWGGVIAKT 53 (385)
T ss_pred cEeCCccCCCCHHHHHHHHhcCCeEEEecc
Confidence 666 67788999999999999988754
No 340
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=22.03 E-value=4.1e+02 Score=27.17 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=56.7
Q ss_pred hhHHHHHHHhCccEEEEcccch------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCC
Q 017962 22 KQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 95 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~------~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~ 95 (363)
-+.+..|++.|++.|.....+. +.++.+..+.. ..| +.+-|.+.-++... . .+
T Consensus 160 l~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~-------------~~~----~~lIIND~vdlAl~---~-~a 218 (347)
T PRK02615 160 LEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCH-------------RYG----ALFIVNDRVDIALA---V-DA 218 (347)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHH-------------HhC----CeEEEeChHHHHHH---c-CC
Confidence 4578999999999998875432 33344444311 111 22334444332222 2 34
Q ss_pred ceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017962 96 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 150 (363)
Q Consensus 96 ~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl 150 (363)
+-|=+...| .|....-..+ +.+.-|-+.++|.+|++.+ ++.|+|=|.+
T Consensus 219 DGVHLgq~d---l~~~~aR~ll-g~~~iIG~S~Hs~~e~~~A---~~~GaDYI~l 266 (347)
T PRK02615 219 DGVHLGQED---LPLAVARQLL-GPEKIIGRSTTNPEEMAKA---IAEGADYIGV 266 (347)
T ss_pred CEEEeChhh---cCHHHHHHhc-CCCCEEEEecCCHHHHHHH---HHcCCCEEEE
Confidence 555554444 3554443322 3344566778888887554 5789999987
No 341
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=22.01 E-value=70 Score=28.87 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=32.5
Q ss_pred EeEecceEEEecCCCCCCCCCceeeeeecCCCCEEEEEecCCCc
Q 017962 307 ILQNAETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAAR 350 (363)
Q Consensus 307 iLQnAETIrLv~p~~~~~~~g~~vsVt~Lk~GD~VL~~~~~~gR 350 (363)
+-..=|+||++.|+ .=-+|+..|-.-|++.+.+++.||
T Consensus 82 ~~~~iESIrI~~pG------~YElNL~~L~~r~e~Ii~l~eeG~ 119 (131)
T PF09845_consen 82 LNDRIESIRILEPG------SYELNLEELLERDEIIIALQEEGR 119 (131)
T ss_pred cccCcceEEEecCc------eEEecHHHHhcCCceEEEecCCce
Confidence 44556999999998 567999999999999999887776
No 342
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.91 E-value=6.9e+02 Score=23.95 Aligned_cols=103 Identities=15% Similarity=0.051 Sum_probs=59.4
Q ss_pred eeeeeecCCcccc-CCCCeeEEEEEecChhhhhhhccccCCCceEEEeCCCCee--ee-----hhhhhhcccCCCceEEE
Q 017962 55 LDPLFIKEGEVYD-SGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQV--IP-----AENIVASFQGSGKTVFA 126 (363)
Q Consensus 55 i~~l~~~~g~~~~-~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~i--IP-----lEnliA~~q~~~~~l~a 126 (363)
|..|.+.||+... -+|+.--......+|-++-+.-.. ..++++.+-..|=.+ -| ++.|.+.. ..-.+=.
T Consensus 4 IPaIDl~~Gk~Vrl~~G~~~~~~~~~~dP~~~A~~~~~-~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~--~~v~vGG 80 (241)
T PRK14114 4 VPAIDLFRGKVARMVKGKKENTIFYEKDPAELVEKLIE-EGFTLIHVVDLSKAIENSVENLPVLEKLSEFA--EHIQIGG 80 (241)
T ss_pred EEEEEEECCEEEEeeccccCcceEECCCHHHHHHHHHH-CCCCEEEEEECCCcccCCcchHHHHHHHHhhc--CcEEEec
Confidence 3345666675432 122222222334567665544433 346666664544221 11 23333332 2446777
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEec---CCHHHHHHHHH
Q 017962 127 ISKTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKE 163 (363)
Q Consensus 127 ~v~~~~eA~~~~~~LE~G~dGVvl~~---~d~~ei~~l~~ 163 (363)
.++|.++++.+|. .|+|=|++.| +||+-++++.+
T Consensus 81 GIrs~e~~~~~l~---~Ga~rvvigT~a~~~p~~l~~~~~ 117 (241)
T PRK14114 81 GIRSLDYAEKLRK---LGYRRQIVSSKVLEDPSFLKFLKE 117 (241)
T ss_pred CCCCHHHHHHHHH---CCCCEEEECchhhCCHHHHHHHHH
Confidence 8999999998875 6999999999 78888777754
No 343
>PRK05967 cystathionine beta-lyase; Provisional
Probab=21.86 E-value=43 Score=34.33 Aligned_cols=117 Identities=11% Similarity=0.168 Sum_probs=64.0
Q ss_pred HHHHHhCccEEEEcccchhhhhhccceeeeee---eee-cCCc---------cccCCCCeeEEEEEecChhhhhhhcccc
Q 017962 26 TAAVERGWNTFVFLSENQQLAIDWSTIALLDP---LFI-KEGE---------VYDSGDRRVGSIIEVSTPQELQQLQPAD 92 (363)
Q Consensus 26 t~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~---l~~-~~g~---------~~~~~gk~v~~~~~v~~~e~~e~~~~~~ 92 (363)
-++||.|.+++++.+.......-+..+ ++| +++ +.+. .++.-|..+ .++...+.+.++.+. .
T Consensus 73 la~le~~~~~v~~sSG~aAi~~~l~al--l~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v-~~vd~~~~e~l~~al--~ 147 (395)
T PRK05967 73 IDALEGSAGTILVPSGLAAVTVPFLGF--LSPGDHALIVDSVYYPTRHFCDTMLKRLGVEV-EYYDPEIGAGIAKLM--R 147 (395)
T ss_pred HHHHhCCCCEEEECcHHHHHHHHHHHh--cCCCCEEEEccCCcHHHHHHHHHHHHhcCeEE-EEeCCCCHHHHHHhc--C
Confidence 357798989999887432222222111 232 222 2221 123334332 222322223333322 1
Q ss_pred CCCceEEEeCCC---CeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 017962 93 GQAENIVIDLPD---WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 149 (363)
Q Consensus 93 ~~~~~vvv~~~d---W~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVv 149 (363)
.+.+.|+++... +++.|++.|.+.+... .++..+.+.-..-..+.-|+.|+|=|+
T Consensus 148 ~~TklV~lesPsNP~l~v~dl~~I~~la~~~--g~~vvVD~t~a~p~~~~pl~~GaDivv 205 (395)
T PRK05967 148 PNTKVVHTEAPGSNTFEMQDIPAIAEAAHRH--GAIVMMDNTWATPLYFRPLDFGVDISI 205 (395)
T ss_pred cCceEEEEECCCCCCCcHHHHHHHHHHHHHh--CCEEEEECCccCceecChhHcCCCEEE
Confidence 245677777643 6888999988876543 356666666666777899999998443
No 344
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.83 E-value=3.3e+02 Score=25.80 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=39.5
Q ss_pred cChhhhhhhccccCCCceEEEeCCCCee--e-ehhhhhhcccC-CCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 80 STPQELQQLQPADGQAENIVIDLPDWQV--I-PAENIVASFQG-SGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 80 ~~~e~~e~~~~~~~~~~~vvv~~~dW~i--I-PlEnliA~~q~-~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
.+|.++-+.-... ++.+++-..|=+. . |--+++.++.. ....+.+ .++|.+|++.++. .|+|+|++.+.
T Consensus 30 ~dp~~~a~~~~~~--~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~---~G~~~vivGta 104 (228)
T PRK04128 30 GDPVEIALRFSEY--VDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYE---IGVENVIIGTK 104 (228)
T ss_pred CCHHHHHHHHHHh--CCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHH---CCCCEEEECch
Confidence 3666654433222 5666665555221 1 11122333222 2334444 6999999998865 49999999766
Q ss_pred CH
Q 017962 154 DV 155 (363)
Q Consensus 154 d~ 155 (363)
-.
T Consensus 105 a~ 106 (228)
T PRK04128 105 AF 106 (228)
T ss_pred hc
Confidence 43
No 345
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=21.71 E-value=92 Score=32.95 Aligned_cols=80 Identities=23% Similarity=0.202 Sum_probs=53.9
Q ss_pred EecChhhhhhhccccCCCceEEEeC------------------------------------------CCCeeeehhhhhh
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDL------------------------------------------PDWQVIPAENIVA 115 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~------------------------------------------~dW~iIPlEnliA 115 (363)
.+.+.|+|++++....+.+.+||.. .+|.++|-+.+-+
T Consensus 187 kvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~ 266 (420)
T KOG0257|consen 187 KVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSA 266 (420)
T ss_pred cccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHhhhh
Confidence 3677888888888776666555532 3588996555544
Q ss_pred cccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 116 SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 116 ~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
.+.-...-.+++.....+|..+...++.+ +++|+.-..+.++
T Consensus 267 ~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~----~~~p~~~y~~~~~ 308 (420)
T KOG0257|consen 267 LFPVHQNFVFTCPTPIQEASAAAFALELA----CLQPGGSYFITEL 308 (420)
T ss_pred HHHHhhccccccCcHHHHHHHHHHhhhhh----ccCCcchhHHHHH
Confidence 33333335778888889999999888887 6667754455444
No 346
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=21.67 E-value=64 Score=32.13 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=37.9
Q ss_pred eeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccCC
Q 017962 57 PLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS 120 (363)
Q Consensus 57 ~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~~ 120 (363)
|+|.-+.-.++.+++++ +.+. +++|++......++..+=+-...+=+++|||+||..++.+
T Consensus 181 PlF~~~~Lti~~~n~~~---iP~FF~Kedlq~~L~~~kkq~p~l~~~~~I~V~~Le~vi~~m~~~ 242 (270)
T TIGR00995 181 PVFQSGLLVVQKKNERY---CPVYFSKEDIEQELSKFKRESPGMADSQVIMVGSMEDVLSKMETS 242 (270)
T ss_pred cEEeecceEEEeCCeEE---EeeEeeHHHHHHHHHHHhHhCcCcCCCccEEEEeHHHHHHHHhcc
Confidence 45555444445556643 3344 7899887655554433322224466899999999999874
No 347
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=21.65 E-value=6.2e+02 Score=25.91 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=65.0
Q ss_pred CCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEec
Q 017962 232 SRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNA 311 (363)
Q Consensus 232 ~RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sviLQnA 311 (363)
+-||.++...++.+. .+||..+.+.- ..-.-++...+.++.++..-+.-.--.- .......+|+=.
T Consensus 211 ~~~~~~~~~~~~p~~-~~gG~~~~~~~----------~~~p~~~~~s~~~~~l~PG~~~~~H~H~---~~~E~~yvl~G~ 276 (367)
T TIGR03404 211 PGPFTYHLSEQKPKQ-VPGGTVRIADS----------TNFPVSKTIAAAIVTVEPGAMRELHWHP---NADEWQYFIQGQ 276 (367)
T ss_pred CccEEEEhhhCCcee-cCCceEEEECh----------hhccCcceEEEEEEEECCCCccCCeeCc---CCCeEEEEEEEE
Confidence 448999999999964 47888753222 1122234466778887776655444332 234577888877
Q ss_pred ceEEEecCCCCCCCCCceeeeeecCCCCEEEEEecCCCcccce
Q 017962 312 ETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHTGI 354 (363)
Q Consensus 312 ETIrLv~p~~~~~~~g~~vsVt~Lk~GD~VL~~~~~~gRHfG~ 354 (363)
=.+.+..+++ . --+.+|++|| .+++..+..|+=.
T Consensus 277 ~~~~v~d~~g------~-~~~~~l~~GD--~~~iP~g~~H~i~ 310 (367)
T TIGR03404 277 ARMTVFAAGG------N-ARTFDYQAGD--VGYVPRNMGHYVE 310 (367)
T ss_pred EEEEEEecCC------c-EEEEEECCCC--EEEECCCCeEEEE
Confidence 7888877662 2 2357899999 5667778888533
No 348
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=21.62 E-value=2.3e+02 Score=28.15 Aligned_cols=136 Identities=14% Similarity=0.222 Sum_probs=75.6
Q ss_pred EEEEe--CchhHHHHHHHhCccEEEEcccc------hhhhhhccceeeee--eeeecCCccccCCCCeeEEEEEecChhh
Q 017962 15 VWIWT--ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKEGEVYDSGDRRVGSIIEVSTPQE 84 (363)
Q Consensus 15 vWvw~--~~K~~vt~AlEsG~~~~v~~~~~------~~~~~~~~~i~~i~--~l~~~~g~~~~~~gk~v~~~~~v~~~e~ 84 (363)
|.+-- -+-+.+..|++.|++.++++.-+ .+..+++..++.-. ++-.+=|.+...++..++.. ..+++|+
T Consensus 80 V~lHLDH~~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s-~~t~pee 158 (293)
T PRK07315 80 VAIHLDHGHYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKG-ELAPIED 158 (293)
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCcc-CCCCHHH
Confidence 66632 26679999999999999998533 23333433332211 12223333333222222221 1489999
Q ss_pred hhhhccccCCCceEEEe-------CCC-CeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017962 85 LQQLQPADGQAENIVID-------LPD-WQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 154 (363)
Q Consensus 85 ~e~~~~~~~~~~~vvv~-------~~d-W~iIPlEnliA~~q~~--~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d 154 (363)
..++. . ..+|++-+. +.. .+.|-+|-| .+++.. +.-|++.=.|--.-.-+-.+.+.|+++|=+.++=
T Consensus 159 a~~f~-~-tgvD~LAv~iG~vHG~y~t~~k~l~~e~L-~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i 235 (293)
T PRK07315 159 AKAMV-E-TGIDFLAAGIGNIHGPYPENWEGLDLDHL-EKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTEC 235 (293)
T ss_pred HHHHH-H-cCCCEEeeccccccccCCCCCCcCCHHHH-HHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHH
Confidence 88877 3 368988886 223 234555543 222221 2345555442222234566789999999998873
No 349
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=21.55 E-value=2.2e+02 Score=25.24 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=24.7
Q ss_pred ceEEEecCCCCCCCCCceeee--------eecCCCCEEEEEecCCCccc
Q 017962 312 ETVALVSPCKGTGEQEKAIPV--------TSLKVGDEVLLRVQGAARHT 352 (363)
Q Consensus 312 ETIrLv~p~~~~~~~g~~vsV--------t~Lk~GD~VL~~~~~~gRHf 352 (363)
+++.||+|+.+.- ....||+ --.++||.|.+....+.+.+
T Consensus 98 ~~~~lVgp~e~d~-~~~~IS~~SPlG~ALlG~~~Gd~v~v~~p~g~~~~ 145 (151)
T TIGR01462 98 ETYTIVGSWEADP-KEGKISIDSPLGKALIGKKVGDVVEVQTPKGEKEY 145 (151)
T ss_pred EEEEEECchhcCc-cCCeecCCCHHHHHHcCCCCCCEEEEEeCCCcEEE
Confidence 3556666664322 1224454 45899999999887776543
No 350
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=21.50 E-value=78 Score=32.66 Aligned_cols=69 Identities=10% Similarity=0.023 Sum_probs=40.2
Q ss_pred ChhhhhhhccccC---CCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 017962 81 TPQELQQLQPADG---QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 149 (363)
Q Consensus 81 ~~e~~e~~~~~~~---~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVv 149 (363)
.++|.+++..+.. ..|+++|+...=--.=.-+.|..+...-.++.-.+.|..-++.+...++.|+|+|-
T Consensus 106 ~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vK 177 (346)
T PRK05096 106 SDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVK 177 (346)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEE
Confidence 4677777777665 58999998763222222334443333222233444455555556667778999984
No 351
>TIGR00451 unchar_dom_2 uncharacterized domain 2. This uncharacterized domain is found a number of enzymes and uncharacterized proteins, often at the C-terminus. It is found in some but not all members of a family of related tRNA-guanine transglycosylases (tgt), which exchange a guanine base for some modified base without breaking the phosphodiester backbone of the tRNA. It is also found in rRNA pseudouridine synthase, another enzyme of RNA base modification not otherwise homologous to tgt. It is found, again at the C-terminus, in two putative glutamate 5-kinases. It is also found in a family of small, uncharacterized archaeal proteins consisting mostly of this domain.
Probab=21.49 E-value=1.4e+02 Score=24.75 Aligned_cols=55 Identities=27% Similarity=0.390 Sum_probs=37.8
Q ss_pred CCeeeecCCce-----eEEEecCCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEEEecccee
Q 017962 233 RPFRVNAGPVH-----AYVLVPGGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVKIESRPLI 290 (363)
Q Consensus 233 RPFRVNAGaVH-----aYv~~pggkT~YLSEL~sG~eVLvVd~~-G~~R~~~VGRvKIE~RPLl 290 (363)
.-..|+.|++. |-++. -|=+..-.+++.||.|.|++.+ | ...-+|++..-+.-|.
T Consensus 31 ~~v~vd~~a~~~l~~Ga~L~~-pGV~~~~~~~~~gd~V~I~~~~~~--~~iavG~a~~~s~e~~ 91 (107)
T TIGR00451 31 KIVVVDNGAVKFLKNGADVMR-PGIVDADEDIKEGDDVVVVDENKD--RPLAVGIALMSGEEMK 91 (107)
T ss_pred CEEEEChhHHHHHHCCccccC-CeeEeCCCCcCCCCEEEEEECCCC--eEEEEEEEecCHHHHH
Confidence 34677777665 33333 3334555689999999999886 6 4578999987776553
No 352
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=21.46 E-value=1.5e+02 Score=24.09 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=17.5
Q ss_pred eccCCCeEEEEcCCCCeeEEeeeeEEE
Q 017962 258 ELKSGKEVIVVDQKGRQRTAVVGRVKI 284 (363)
Q Consensus 258 EL~sG~eVLvVd~~G~~R~~~VGRvKI 284 (363)
-|+.||.|.+.+..|+. ..++|+
T Consensus 44 gi~~Gd~V~v~s~~G~~----~~~v~~ 66 (116)
T cd02786 44 GIADGDLVVVFNDRGSV----TLRAKV 66 (116)
T ss_pred CCCCCCEEEEEcCCeEE----EEEEEE
Confidence 47889999999999854 345554
No 353
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=21.44 E-value=64 Score=34.60 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=25.8
Q ss_pred CCceeeeeecCCCCEEEEEecCCCcccceeee
Q 017962 326 QEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQ 357 (363)
Q Consensus 326 ~g~~vsVt~Lk~GD~VL~~~~~~gRHfG~~I~ 357 (363)
.|..|+..+++|||-|......+..|+||-|.
T Consensus 418 ~G~~Vs~selqpGDLVFF~~~~~~~HVGIYiG 449 (481)
T PRK13914 418 STTRISESQAKPGDLVFFDYGSGISHVGIYVG 449 (481)
T ss_pred cCcccccccCCCCCEEEeCCCCCCCEEEEEeC
Confidence 36789999999999998765455679999873
No 354
>TIGR02798 ligK_PcmE 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase. Members of this protein family 4-carboxy-4-hydroxy-2-oxoadipate aldolase, also called 4-oxalocitramalate aldolase. This enzyme of the protocatechuate 4,5-cleavage pathway converts its substrate to pyruvate plus oxaloacetate. Protocatechuate is an intermediate in many pathways for degrading aromatic compounds, including lignin, fluorene, etc. Hara, et al. showed the LigK gene was not only a 4-carboxy-4-hydroxy-2-oxoadipate aldolase but also the enzyme of the following step, oxaloacetate decarboxylase.
Probab=21.44 E-value=64 Score=30.87 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=31.8
Q ss_pred cCCceeEEEecCCce---eeeeeccCCCeEEEEcCCCCeeEEeeeeE
Q 017962 239 AGPVHAYVLVPGGKT---CYLSELKSGKEVIVVDQKGRQRTAVVGRV 282 (363)
Q Consensus 239 AGaVHaYv~~pggkT---~YLSEL~sG~eVLvVd~~G~~R~~~VGRv 282 (363)
+|+...--..|++.. .+|.+.++|| ||++|..|..+.+..|-.
T Consensus 50 ~G~A~TV~~~~~d~~~~~~ai~~~~pGd-VlVid~~g~~~~a~~G~~ 95 (222)
T TIGR02798 50 CGTAVTVLLQPGDNWMMHVAAEQIQEGD-VVVAACTAECEDGYFGDL 95 (222)
T ss_pred EEEEEEEEeecCCchHHHHHHHhCCCCe-EEEEECCCCcceEeehHH
Confidence 666655555565543 5788888876 788999999999998854
No 355
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=21.23 E-value=1.1e+02 Score=30.55 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=24.6
Q ss_pred EEEEcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHHH
Q 017962 124 VFAISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAVL 159 (363)
Q Consensus 124 l~a~v~~~~eA~~~~~~LE~G~dGVvl~~-----~d~~ei~ 159 (363)
+-|.+.+++||.. ++|.|+|||++.+ +||.+..
T Consensus 194 vdAGIgt~sDa~~---AmElGaDgVL~nSaIakA~dP~~mA 231 (267)
T CHL00162 194 IDAGIGTPSEASQ---AMELGASGVLLNTAVAQAKNPEQMA 231 (267)
T ss_pred EeCCcCCHHHHHH---HHHcCCCEEeecceeecCCCHHHHH
Confidence 4466788888764 6789999998865 7885543
No 356
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=21.15 E-value=5e+02 Score=24.56 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=54.9
Q ss_pred eeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEEeCCCCee---eehhhhhhcc-cCCCceEEE--EcCC
Q 017962 57 PLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQV---IPAENIVASF-QGSGKTVFA--ISKT 130 (363)
Q Consensus 57 ~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~i---IPlEnliA~~-q~~~~~l~a--~v~~ 130 (363)
.|.+.||..+...... ......+|.++-+..... .++.+.+...|=.. =+--.++.++ +.....|.+ .++|
T Consensus 9 ~iD~~~G~~V~~~~~~--~~~~~~dp~~~a~~~~~~-G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s 85 (254)
T TIGR00735 9 CLDVRDGRVVKGVQFL--NLRDAGDPVELAQRYDEE-GADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKS 85 (254)
T ss_pred EEEeECCEEEEeEeec--CceECCCHHHHHHHHHHc-CCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCC
Confidence 3566777655432111 011234666655544443 45666665443210 0111222222 112233444 8999
Q ss_pred HHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHHhh
Q 017962 131 PSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEYF 165 (363)
Q Consensus 131 ~~eA~~~~~~LE~G~dGVvl~~~---d~~ei~~l~~~~ 165 (363)
.++++.++. .|+++|++.+. ||+.+.++.+.+
T Consensus 86 ~~d~~~~~~---~Ga~~vivgt~~~~~p~~~~~~~~~~ 120 (254)
T TIGR00735 86 IEDVDKLLR---AGADKVSINTAAVKNPELIYELADRF 120 (254)
T ss_pred HHHHHHHHH---cCCCEEEEChhHhhChHHHHHHHHHc
Confidence 999998876 49999999885 566665555444
No 357
>COG1385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.11 E-value=1.2e+02 Score=29.33 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=41.9
Q ss_pred CCeeeecCCceeEEEecCCceeeee---eccCCCeEEEEcCCCCeeEEeeeeEEEecccee
Q 017962 233 RPFRVNAGPVHAYVLVPGGKTCYLS---ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLI 290 (363)
Q Consensus 233 RPFRVNAGaVHaYv~~pggkT~YLS---EL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLl 290 (363)
|-|--+.-..+.|+..+++..+||- -|+.||++.+.|.+|....+.+ .++.++...
T Consensus 5 ~~~v~~~~~~~~~~~l~~~~~~Hl~~VlRl~~gd~l~l~~g~g~~~~a~i--~~~~kk~~~ 63 (246)
T COG1385 5 RLFVDEELAEGATVILTGDEAHHLKRVLRLKEGDELRLFDGSGGEFLAEI--TKIGKKEAL 63 (246)
T ss_pred eEeecccccCCCEEEECchhhhhHHheeecCCCCEEEEEeCCCcEEEEEE--eecCCCceE
Confidence 4444455667789999999999998 7899999999999999887633 234455433
No 358
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.98 E-value=1.4e+02 Score=24.50 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=31.2
Q ss_pred EEEeeccccCCCCCCCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEE
Q 017962 218 FLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKI 284 (363)
Q Consensus 218 fLVhsEt~e~~Yva~RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKI 284 (363)
+..|+.+..+++...+. -+.|+.+.-. +.-=.-|+.||.|.+.+..|+.+ .+|++
T Consensus 11 ~~~~s~~~~~~~l~~~~-------~~~~v~i~p~-dA~~~gi~~Gd~V~v~s~~G~i~----~~v~v 65 (123)
T cd02778 11 VHTHGHTANNPLLHELT-------PENTLWINPE-TAARLGIKDGDRVEVSSARGKVT----GKARL 65 (123)
T ss_pred eecCCccccCHHHHhcC-------CCCeEEECHH-HHHHcCCCCCCEEEEEeCCCcEE----EEEEE
Confidence 44577666555543332 2345555211 22222478899999999999643 45554
No 359
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=20.81 E-value=72 Score=33.75 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=44.0
Q ss_pred hhhhhhhccccC-CCceEEEeCCCCeeeehhhhhhcccCC--CceEEEE-cCCHHHHHHHHHHhhcccCeEE
Q 017962 82 PQELQQLQPADG-QAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAI-SKTPSEAQIFLEALEQGLGGIV 149 (363)
Q Consensus 82 ~e~~e~~~~~~~-~~~~vvv~~~dW~iIPlEnliA~~q~~--~~~l~a~-v~~~~eA~~~~~~LE~G~dGVv 149 (363)
++..+++..+.. .++.++++..+-.-....++|+.+... +.-|++. +.+.++| ....+.|+|+|-
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~---~~l~~~G~d~i~ 292 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGV---RDLLEAGANIIK 292 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHH---HHHHHhCCCEEE
Confidence 344455555443 489999998866668888999988765 3455554 5555555 455578999997
No 360
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=20.76 E-value=62 Score=31.99 Aligned_cols=45 Identities=27% Similarity=0.269 Sum_probs=27.2
Q ss_pred hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHH
Q 017962 110 AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV 158 (363)
Q Consensus 110 lEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~-----~d~~ei 158 (363)
++.|+.++ +-..-+=|...++++|. .++|.|+||||+.| .||-..
T Consensus 167 l~~i~~~~-~vPvIvDAGiG~pSdaa---~AMElG~daVLvNTAiA~A~dPv~M 216 (247)
T PF05690_consen 167 LRIIIERA-DVPVIVDAGIGTPSDAA---QAMELGADAVLVNTAIAKAKDPVAM 216 (247)
T ss_dssp HHHHHHHG-SSSBEEES---SHHHHH---HHHHTT-SEEEESHHHHTSSSHHHH
T ss_pred HHHHHHhc-CCcEEEeCCCCCHHHHH---HHHHcCCceeehhhHHhccCCHHHH
Confidence 45566665 33444556677888875 56899999999976 566443
No 361
>PRK06247 pyruvate kinase; Provisional
Probab=20.71 E-value=2.4e+02 Score=30.25 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=42.3
Q ss_pred CCceEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017962 94 QAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 156 (363)
Q Consensus 94 ~~~~vvv~~~--dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ 156 (363)
..|++-+.|- .=.|..+-+++.. +..|++...+.+--+-.=++++. +|||++.+.|.+
T Consensus 186 ~vD~ia~SFVr~a~Di~~~r~~l~~----~~~iiaKIEt~eav~nldeI~~~-~DgImVaRGDLg 245 (476)
T PRK06247 186 GVDWVALSFVQRPEDVEEVRKIIGG----RVPVMAKIEKPQAIDRLEAIVEA-SDAIMVARGDLG 245 (476)
T ss_pred CCCEEEECCCCCHHHHHHHHHHhhh----cCeEEEEECCHHHHHhHHHHHHH-cCEEEEccchhc
Confidence 4566666543 2234455555532 56799999999999999999999 999999999853
No 362
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=20.65 E-value=3.6e+02 Score=28.07 Aligned_cols=49 Identities=22% Similarity=0.241 Sum_probs=27.9
Q ss_pred EEEEEEE-------EcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeee
Q 017962 180 ATVTRVD-------VAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRV 237 (363)
Q Consensus 180 atVt~V~-------~vGmGdRVCVDtcsll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRV 237 (363)
++|.+|+ .+.-||||.+-+.++ =.-+-.+|++|++.+. +|..+++=|+.
T Consensus 275 ~~VksI~~~~~~~~~a~aG~~v~i~L~~i-------~~~~v~rG~vl~~~~~--~p~~~~~~f~a 330 (446)
T PTZ00141 275 TEVKSVEMHHEQLAEAVPGDNVGFNVKNV-------SVKDIKRGYVASDSKN--DPAKECADFTA 330 (446)
T ss_pred EEEEEEEecCcccCEECCCCEEEEEECCC-------CHHHcCCceEEecCCC--CCCccceEEEE
Confidence 4555554 456899999866432 1124567777776542 34444444544
No 363
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=20.44 E-value=2.9e+02 Score=20.28 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017962 132 SEAQIFLEALEQGLGGIVLKVEDVKAVLA 160 (363)
Q Consensus 132 ~eA~~~~~~LE~G~dGVvl~~~d~~ei~~ 160 (363)
.........++.|+++++.+|-+..++.+
T Consensus 90 ~~~~~~~~~~~~g~~~~i~~p~~~~~l~~ 118 (129)
T PRK10610 90 AKKENIIAAAQAGASGYVVKPFTAATLEE 118 (129)
T ss_pred CCHHHHHHHHHhCCCeEEECCCCHHHHHH
Confidence 34455678889999999999998876643
No 364
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.43 E-value=2.5e+02 Score=28.05 Aligned_cols=84 Identities=24% Similarity=0.287 Sum_probs=49.5
Q ss_pred EEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCCC
Q 017962 245 YVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTG 324 (363)
Q Consensus 245 Yv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~p~~~~~ 324 (363)
-|..|-|-|.| -|.+|..++--+.+.-.- .+|=--..-.|||++ . +...+++-+.+...+.|.-.+
T Consensus 185 IVsTPTGSTAY--slSAGGPIv~P~~~~~~i-tPI~Phsl~~RplVl-----p--~~~~I~i~~~~~~~~~l~~DG---- 250 (305)
T PRK02649 185 ILSTPTGSTAY--SLSAGGPVITPDVPVLQL-TPICPHSLASRALVF-----S--DSEPVTVFPATPERLVMVVDG---- 250 (305)
T ss_pred EEeCCCcHHHH--HhhCCCcccCCCCCeEEE-EecCcCCCCCCCEEE-----C--CCCEEEEEecCCCcEEEEEec----
Confidence 36788899999 477888766544433222 222223345688865 2 234455544443445555433
Q ss_pred CCCceeeeeecCCCCEEEEEecC
Q 017962 325 EQEKAIPVTSLKVGDEVLLRVQG 347 (363)
Q Consensus 325 ~~g~~vsVt~Lk~GD~VL~~~~~ 347 (363)
. ....|++||+|.++...
T Consensus 251 ---~--~~~~l~~gd~i~I~~s~ 268 (305)
T PRK02649 251 ---N--AGCYVWPEDRVLIRRSP 268 (305)
T ss_pred ---c--eeEecCCCCEEEEEECC
Confidence 2 35788999999888654
No 365
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=20.42 E-value=2.8e+02 Score=27.31 Aligned_cols=85 Identities=24% Similarity=0.402 Sum_probs=47.2
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCCCC
Q 017962 246 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGE 325 (363)
Q Consensus 246 v~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~p~~~~~~ 325 (363)
|.+|-|-|.| -|.+|..|+--+.+.-. ..+|---..-.||+++ . +...+.+-+.+...+.++-.+
T Consensus 181 VsTPtGSTAY--slSaGGPIv~p~~~~~~-ltPI~p~~l~~rpiVl-----~--~~~~i~i~~~~~~~~~l~~DG----- 245 (291)
T PRK02155 181 VATPTGSTAY--ALSAGGPILHPQLPGWV-LVPIAPHTLSNRPIVL-----P--DDSEVAIQIVGGRDVSVNFDM----- 245 (291)
T ss_pred EECCCchhhh--hhhcCCcccCCCCCeEE-EEecCcCccCCCCEEE-----C--CCCEEEEEEcCCCcEEEEEcC-----
Confidence 5567788888 36777766533333211 1222222344588865 2 233445534333455565533
Q ss_pred CCceeeeeecCCCCEEEEEecCCC
Q 017962 326 QEKAIPVTSLKVGDEVLLRVQGAA 349 (363)
Q Consensus 326 ~g~~vsVt~Lk~GD~VL~~~~~~g 349 (363)
. ....|++||+|.++..+..
T Consensus 246 --~--~~~~l~~~d~i~i~~s~~~ 265 (291)
T PRK02155 246 --Q--SLTSLELGDRIEVRRSPHT 265 (291)
T ss_pred --C--cceeCCCCCEEEEEECCCe
Confidence 1 3677999999999876643
No 366
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=20.39 E-value=1.9e+02 Score=28.09 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=45.6
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
.+.-|++ +.|+ ++-.++..--.+..++-...+..+......+|..|+..++..|.+.+++.++
T Consensus 19 ~~~~v~~-~~~~----~~~~~~~~~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~ 81 (322)
T TIGR03815 19 RAPLVLV-DADM----AEACAAAGLPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVEL 81 (322)
T ss_pred cCCeEEE-Cchh----hhHHHhccCCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHH
Confidence 3555666 6665 4555554333445577777777789999999999999999999998876443
No 367
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=20.39 E-value=1.7e+02 Score=25.41 Aligned_cols=40 Identities=23% Similarity=0.163 Sum_probs=28.1
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 162 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~ 162 (363)
..++.... ..+......+++.|+|+.+.+|-++.++.+.-
T Consensus 73 ~pvi~lt~-~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i 112 (225)
T PRK10529 73 IPVIVLSA-RSEESDKIAALDAGADDYLSKPFGIGELQARL 112 (225)
T ss_pred CCEEEEEC-CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 34444433 23445567899999999999999988775443
No 368
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=20.32 E-value=1.4e+02 Score=26.49 Aligned_cols=34 Identities=21% Similarity=0.112 Sum_probs=27.9
Q ss_pred HHHHHHHhhcccCeEEEecC-CHHHHHHHHHhhcc
Q 017962 134 AQIFLEALEQGLGGIVLKVE-DVKAVLALKEYFDG 167 (363)
Q Consensus 134 A~~~~~~LE~G~dGVvl~~~-d~~ei~~l~~~~~~ 167 (363)
-+.+.-.||||+==|.-+|+ +++++.+|+++++.
T Consensus 40 ~e~~VH~LEHGaV~i~Y~p~~~~~~v~~L~~l~~~ 74 (130)
T PF11303_consen 40 PERAVHNLEHGAVWITYDPCLPPDQVAKLKALAKS 74 (130)
T ss_pred hHHHHHhhhcCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 34566779999988888999 88999999998854
No 369
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=20.15 E-value=1.5e+02 Score=25.56 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=26.9
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 123 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 123 ~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
.++.... ..+......+++.|+|+++.+|-+..++...
T Consensus 75 ~ii~l~~-~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~ 112 (221)
T PRK10766 75 GIILVTG-RTDSIDRIVGLEMGADDYVTKPLELRELLVR 112 (221)
T ss_pred CEEEEEC-CCcHHHHHHHHHcCCCcEEeCCCCHHHHHHH
Confidence 4444433 3344556788999999999999998876543
No 370
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.09 E-value=3.4e+02 Score=26.30 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=49.6
Q ss_pred eEEEEEecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHh-hcccCeEEE
Q 017962 73 VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEAL-EQGLGGIVL 150 (363)
Q Consensus 73 v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~L-E~G~dGVvl 150 (363)
+..+....+.++++.+... ..+.+=|-..|=+.+||=.-+|+. +...=|=+...+.+|.+.|+.++ +.|.+-++|
T Consensus 70 i~f~stpfd~~s~d~l~~~--~~~~~KIaS~dl~n~~lL~~~A~t-gkPvIlSTG~stl~EI~~Av~~~~~~~~~~l~l 145 (241)
T PF03102_consen 70 IDFFSTPFDEESVDFLEEL--GVPAYKIASGDLTNLPLLEYIAKT-GKPVILSTGMSTLEEIERAVEVLREAGNEDLVL 145 (241)
T ss_dssp -EEEEEE-SHHHHHHHHHH--T-SEEEE-GGGTT-HHHHHHHHTT--S-EEEE-TT--HHHHHHHHHHHHHHCT--EEE
T ss_pred CEEEECCCCHHHHHHHHHc--CCCEEEeccccccCHHHHHHHHHh-CCcEEEECCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 4466678899988887443 477888888899999999999973 33333445678999999999999 888887776
No 371
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=20.03 E-value=3.3e+02 Score=23.16 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=28.4
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 162 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~ 162 (363)
..++... +..+......+++.|+++++.+|.+..++.+..
T Consensus 73 ~~ii~lt-~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i 112 (221)
T PRK15479 73 LPVLLLT-ARSAVADRVKGLNVGADDYLPKPFELEELDARL 112 (221)
T ss_pred CCEEEEE-CCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHH
Confidence 3454443 334555667789999999999999988875543
Done!