Query 017962
Match_columns 363
No_of_seqs 137 out of 166
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 07:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017962.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017962hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1at0_A 17-hedgehog; developmen 97.5 0.00038 1.3E-08 59.7 8.9 95 243-346 5-103 (145)
2 2in0_A Endonuclease PI-MTUI; h 96.5 0.0089 3.1E-07 49.8 8.1 83 247-344 10-96 (139)
3 1mi8_A DNAB intein; all beta-s 96.5 0.012 4.3E-07 49.9 9.1 86 244-344 8-98 (158)
4 1am2_A MXE GYRA intein; protei 95.8 0.035 1.2E-06 49.5 8.9 87 244-344 7-107 (199)
5 2imz_A Endonuclease PI-MTUI; N 94.1 0.13 4.4E-06 43.8 7.2 86 244-344 6-96 (168)
6 4e2u_A PHO RADA intein; HINT-f 93.9 0.25 8.4E-06 42.8 8.8 91 244-346 10-125 (168)
7 3qz6_A HPCH/HPAI aldolase; str 91.6 0.31 1.1E-05 45.3 6.6 92 70-165 14-110 (261)
8 2lcj_A PAB POLC intein; hydrol 91.4 0.89 3.1E-05 39.7 9.0 74 261-345 45-121 (185)
9 3qja_A IGPS, indole-3-glycerol 90.3 1.9 6.6E-05 40.3 10.7 118 21-158 124-254 (272)
10 3luf_A Two-component system re 88.4 1.5 5.3E-05 39.1 8.2 138 20-165 84-243 (259)
11 2v5j_A 2,4-dihydroxyhept-2-ENE 88.3 2.4 8.2E-05 39.9 9.8 93 69-165 36-133 (287)
12 1dxe_A 2-dehydro-3-deoxy-galac 87.0 3.5 0.00012 37.7 9.8 89 72-166 20-114 (256)
13 2vws_A YFAU, 2-keto-3-deoxy su 86.5 2.8 9.4E-05 38.8 8.9 92 70-165 16-112 (267)
14 3qz6_A HPCH/HPAI aldolase; str 84.8 0.44 1.5E-05 44.3 2.6 142 13-156 17-179 (261)
15 3q58_A N-acetylmannosamine-6-p 84.3 4.4 0.00015 36.8 9.0 107 22-152 91-211 (229)
16 1dxe_A 2-dehydro-3-deoxy-galac 82.5 6.1 0.00021 36.1 9.2 139 14-156 22-181 (256)
17 2v82_A 2-dehydro-3-deoxy-6-pho 82.4 2.4 8.2E-05 36.8 6.2 107 22-153 22-130 (212)
18 3bo9_A Putative nitroalkan dio 81.2 5.3 0.00018 37.7 8.6 114 18-152 36-152 (326)
19 3paj_A Nicotinate-nucleotide p 79.9 2.5 8.5E-05 41.1 5.9 41 122-165 232-272 (320)
20 2k1g_A Lipoprotein SPR; soluti 79.4 0.91 3.1E-05 38.7 2.4 31 327-357 60-90 (135)
21 1izc_A Macrophomate synthase i 78.8 3.9 0.00013 39.6 6.9 91 72-166 43-140 (339)
22 1dfa_A PI-SCEI endonuclease; i 78.4 0.67 2.3E-05 46.0 1.4 90 242-343 4-104 (454)
23 3tsm_A IGPS, indole-3-glycerol 78.4 21 0.0007 33.6 11.5 122 21-165 131-266 (272)
24 1umk_A B5R, NADH-cytochrome B5 77.5 5.3 0.00018 35.6 6.9 112 175-294 14-154 (275)
25 3o63_A Probable thiamine-phosp 76.9 15 0.0005 33.8 9.9 89 70-165 135-239 (243)
26 1e0t_A Pyruvate kinase, PK; ph 76.0 4.3 0.00015 41.3 6.5 37 119-156 212-248 (470)
27 3vnd_A TSA, tryptophan synthas 75.9 2.5 8.6E-05 39.6 4.5 114 22-153 113-237 (267)
28 2w6r_A Imidazole glycerol phos 75.7 14 0.00048 32.8 9.2 114 21-152 32-177 (266)
29 3igs_A N-acetylmannosamine-6-p 75.7 9.9 0.00034 34.5 8.3 107 22-152 91-211 (232)
30 2qzj_A Two-component response 75.0 16 0.00054 28.2 8.3 79 78-161 33-114 (136)
31 3tqv_A Nicotinate-nucleotide p 74.8 4.6 0.00016 38.7 6.1 42 121-165 198-239 (287)
32 3l0g_A Nicotinate-nucleotide p 73.8 4.7 0.00016 39.0 5.9 43 121-166 207-249 (300)
33 1wa3_A 2-keto-3-deoxy-6-phosph 73.8 6.2 0.00021 33.9 6.2 121 22-165 25-145 (205)
34 2v5j_A 2,4-dihydroxyhept-2-ENE 73.5 9.4 0.00032 35.9 7.8 36 121-156 166-202 (287)
35 2vws_A YFAU, 2-keto-3-deoxy su 73.0 12 0.00042 34.4 8.4 36 121-156 145-181 (267)
36 3igs_A N-acetylmannosamine-6-p 72.9 37 0.0013 30.6 11.4 112 22-150 39-155 (232)
37 1sgj_A Citrate lyase, beta sub 72.3 11 0.00038 34.7 7.9 91 72-166 9-116 (284)
38 3m7n_A Putative uncharacterize 71.7 9.2 0.00032 33.5 6.8 98 246-347 3-124 (179)
39 1qop_A Tryptophan synthase alp 71.5 4.2 0.00014 37.3 4.8 114 22-153 112-236 (268)
40 3qtg_A Pyruvate kinase, PK; TI 71.3 4.4 0.00015 41.3 5.3 135 20-167 182-344 (461)
41 4avf_A Inosine-5'-monophosphat 71.3 9.8 0.00033 38.2 7.8 115 18-153 227-363 (490)
42 4fxs_A Inosine-5'-monophosphat 71.3 8.3 0.00028 38.8 7.3 115 18-153 229-365 (496)
43 3q58_A N-acetylmannosamine-6-p 70.9 30 0.001 31.2 10.3 114 22-150 39-155 (229)
44 3hdg_A Uncharacterized protein 70.8 15 0.00052 27.9 7.2 83 78-163 36-120 (137)
45 3nav_A Tryptophan synthase alp 70.5 4.4 0.00015 38.1 4.8 114 22-153 115-239 (271)
46 1o4u_A Type II quinolic acid p 70.4 7.4 0.00025 37.0 6.3 42 122-166 194-235 (285)
47 4e7p_A Response regulator; DNA 70.2 26 0.00091 27.2 8.7 81 78-161 51-133 (150)
48 3jte_A Response regulator rece 70.0 24 0.00081 27.0 8.2 82 78-161 32-116 (143)
49 2ekc_A AQ_1548, tryptophan syn 69.9 3.8 0.00013 37.6 4.1 113 22-152 112-235 (262)
50 3usb_A Inosine-5'-monophosphat 69.9 5.6 0.00019 40.2 5.7 115 18-153 254-390 (511)
51 1wbh_A KHG/KDPG aldolase; lyas 69.8 14 0.00049 33.1 7.8 108 22-153 31-138 (214)
52 3jqq_A Ferredoxin NADP reducta 69.5 6.1 0.00021 36.7 5.5 59 230-294 98-178 (316)
53 3c2e_A Nicotinate-nucleotide p 69.4 3 0.0001 39.6 3.4 69 122-196 200-276 (294)
54 3gnn_A Nicotinate-nucleotide p 69.3 4.9 0.00017 38.7 4.9 42 121-165 209-250 (298)
55 2b7n_A Probable nicotinate-nuc 69.0 11 0.00038 35.1 7.2 42 122-166 183-224 (273)
56 1vhc_A Putative KHG/KDPG aldol 68.4 14 0.00049 33.4 7.5 109 21-153 31-139 (224)
57 2gjl_A Hypothetical protein PA 68.3 9.5 0.00032 35.6 6.5 51 94-152 96-146 (328)
58 1qap_A Quinolinic acid phospho 67.9 7.1 0.00024 37.2 5.6 40 123-165 210-249 (296)
59 3lab_A Putative KDPG (2-keto-3 67.9 14 0.00048 34.0 7.4 122 20-165 26-157 (217)
60 3hqn_D Pyruvate kinase, PK; TI 67.7 2.7 9.3E-05 43.1 2.9 134 20-166 193-352 (499)
61 1k68_A Phytochrome response re 67.6 20 0.00067 26.9 7.2 66 94-161 55-124 (140)
62 1qo2_A Molecule: N-((5-phospho 67.3 23 0.00077 31.3 8.5 133 15-152 76-224 (241)
63 3h1g_A Chemotaxis protein CHEY 66.6 21 0.00072 27.1 7.2 40 121-161 81-120 (129)
64 3ffs_A Inosine-5-monophosphate 66.3 17 0.00057 36.1 8.1 109 22-153 146-277 (400)
65 2qvg_A Two component response 66.0 26 0.0009 26.7 7.7 66 94-161 59-128 (143)
66 3gr4_A Pyruvate kinase isozyme 65.6 6.3 0.00022 41.0 5.1 134 20-166 243-402 (550)
67 4drs_A Pyruvate kinase; glycol 65.4 8 0.00028 39.9 5.8 138 23-166 220-383 (526)
68 4eh1_A Flavohemoprotein; struc 65.3 9.9 0.00034 33.0 5.7 102 177-294 3-122 (243)
69 4e38_A Keto-hydroxyglutarate-a 64.7 16 0.00055 33.7 7.2 108 21-155 48-158 (232)
70 3hdv_A Response regulator; PSI 64.6 21 0.00071 27.1 6.8 40 121-161 81-120 (136)
71 1vzw_A Phosphoribosyl isomeras 64.6 12 0.00042 32.9 6.2 113 19-154 32-169 (244)
72 1ujp_A Tryptophan synthase alp 64.5 7.8 0.00027 36.1 5.1 114 22-153 109-231 (271)
73 3qja_A IGPS, indole-3-glycerol 63.8 15 0.00051 34.3 6.9 113 22-154 75-192 (272)
74 1a3w_A Pyruvate kinase; allost 63.4 7.7 0.00026 39.8 5.2 38 236-274 392-429 (500)
75 1xi3_A Thiamine phosphate pyro 62.9 26 0.00089 29.7 7.8 77 78-165 114-210 (215)
76 3o63_A Probable thiamine-phosp 62.7 17 0.00059 33.3 7.0 103 22-152 46-163 (243)
77 3q9s_A DNA-binding response re 62.1 25 0.00085 30.8 7.7 81 78-161 66-147 (249)
78 2wfw_A ARC; ATP-binding protei 62.0 9 0.00031 33.9 4.7 44 229-283 25-74 (153)
79 2jbm_A Nicotinate-nucleotide p 62.0 13 0.00044 35.3 6.2 42 122-166 198-239 (299)
80 3f6c_A Positive transcription 61.8 24 0.00083 26.6 6.7 66 94-161 46-113 (134)
81 2jyx_A Lipoprotein SPR; soluti 61.5 3.6 0.00012 34.5 2.0 31 327-357 60-90 (136)
82 2tps_A Protein (thiamin phosph 61.0 28 0.00095 30.0 7.7 78 78-165 122-220 (227)
83 1vzw_A Phosphoribosyl isomeras 60.9 15 0.00052 32.3 6.1 28 14-41 77-106 (244)
84 1at0_A 17-hedgehog; developmen 60.9 17 0.00058 30.6 6.2 33 252-284 85-118 (145)
85 2jmz_A Hypothetical protein MJ 60.5 10 0.00035 33.0 4.8 66 263-345 57-131 (186)
86 3kcn_A Adenylate cyclase homol 60.4 42 0.0014 26.1 8.1 82 78-161 32-116 (151)
87 2e28_A Pyruvate kinase, PK; al 60.4 14 0.00048 38.5 6.6 35 121-156 215-249 (587)
88 1w8s_A FBP aldolase, fructose- 60.4 20 0.00067 33.0 7.0 82 81-166 157-252 (263)
89 2w6r_A Imidazole glycerol phos 60.1 49 0.0017 29.3 9.4 69 94-165 169-246 (266)
90 1p2f_A Response regulator; DRR 60.0 36 0.0012 28.3 8.1 80 78-162 30-111 (220)
91 4fo4_A Inosine 5'-monophosphat 59.2 27 0.00091 34.1 8.0 115 20-153 108-242 (366)
92 1gpp_A Endonuclease PI-SCEI; h 58.7 7.3 0.00025 36.7 3.7 32 244-277 16-47 (237)
93 4fk8_A Ferredoxin--NADP reduct 58.5 16 0.00054 32.5 5.8 102 176-294 18-130 (271)
94 1nir_A Nitrite reductase; hemo 58.4 1.3E+02 0.0046 29.5 13.0 167 136-320 75-256 (543)
95 2y88_A Phosphoribosyl isomeras 58.3 20 0.00067 31.4 6.3 28 14-41 76-105 (244)
96 2gjl_A Hypothetical protein PA 57.5 40 0.0014 31.4 8.6 107 22-152 86-202 (328)
97 3kht_A Response regulator; PSI 57.4 48 0.0017 25.3 7.9 81 78-161 36-121 (144)
98 2yw3_A 4-hydroxy-2-oxoglutarat 57.4 46 0.0016 29.4 8.7 105 21-154 27-134 (207)
99 1yxy_A Putative N-acetylmannos 57.2 56 0.0019 28.5 9.1 112 22-148 39-157 (234)
100 3mz2_A Glycerophosphoryl diest 57.1 14 0.00048 34.5 5.5 50 111-162 218-275 (292)
101 1xi3_A Thiamine phosphate pyro 57.0 45 0.0016 28.2 8.3 102 22-152 29-136 (215)
102 2jba_A Phosphate regulon trans 56.9 38 0.0013 25.1 6.9 79 78-161 31-115 (127)
103 3gt7_A Sensor protein; structu 56.7 60 0.002 25.4 8.5 85 78-165 36-125 (154)
104 3tsm_A IGPS, indole-3-glycerol 56.3 39 0.0013 31.8 8.3 71 79-154 129-199 (272)
105 3llv_A Exopolyphosphatase-rela 56.3 42 0.0014 26.4 7.5 116 12-153 6-125 (141)
106 3gg8_A Pyruvate kinase; malari 56.3 6.7 0.00023 40.4 3.3 134 20-166 208-368 (511)
107 3tha_A Tryptophan synthase alp 56.1 12 0.00042 34.9 4.8 116 21-153 105-229 (252)
108 1kgs_A DRRD, DNA binding respo 55.9 41 0.0014 28.0 7.7 81 78-161 31-113 (225)
109 1rd5_A Tryptophan synthase alp 55.8 9.7 0.00033 34.3 4.0 109 26-152 112-231 (262)
110 1qpo_A Quinolinate acid phosph 55.8 14 0.00048 35.0 5.3 41 123-166 196-236 (284)
111 3cnb_A DNA-binding response re 55.7 59 0.002 24.4 8.0 81 79-162 40-124 (143)
112 2v82_A 2-dehydro-3-deoxy-6-pho 55.5 22 0.00075 30.6 6.1 105 21-152 69-177 (212)
113 3khd_A Pyruvate kinase; malari 55.4 7.4 0.00025 40.2 3.5 134 20-166 217-377 (520)
114 1h1y_A D-ribulose-5-phosphate 55.3 17 0.00058 32.2 5.4 123 21-165 76-221 (228)
115 3fwz_A Inner membrane protein 55.2 49 0.0017 26.4 7.8 104 22-153 20-127 (140)
116 3eqz_A Response regulator; str 55.2 62 0.0021 24.1 9.7 83 78-163 32-120 (135)
117 1thf_D HISF protein; thermophI 54.4 33 0.0011 30.1 7.2 28 14-41 76-105 (253)
118 3grc_A Sensor protein, kinase; 54.0 22 0.00076 27.1 5.3 42 120-161 79-120 (140)
119 2cnd_A NADH-dependent nitrate 53.8 53 0.0018 28.8 8.5 111 176-294 11-144 (270)
120 2zay_A Response regulator rece 53.7 69 0.0024 24.4 8.2 81 78-161 37-121 (147)
121 3t05_A Pyruvate kinase, PK; te 53.4 7.8 0.00027 40.7 3.3 134 20-166 194-353 (606)
122 1k66_A Phytochrome response re 53.1 54 0.0018 24.8 7.4 66 94-161 62-131 (149)
123 1sgj_A Citrate lyase, beta sub 53.1 84 0.0029 28.8 10.0 135 12-156 7-157 (284)
124 3eul_A Possible nitrate/nitrit 52.7 54 0.0018 25.4 7.5 81 78-161 46-128 (152)
125 1zgz_A Torcad operon transcrip 52.5 26 0.0009 25.9 5.4 66 94-161 46-112 (122)
126 3khj_A Inosine-5-monophosphate 52.3 31 0.0011 33.4 7.2 109 22-153 107-238 (361)
127 3hv2_A Response regulator/HD d 52.2 77 0.0026 24.6 8.4 81 78-161 43-126 (153)
128 2aam_A Hypothetical protein TM 52.0 28 0.00096 33.2 6.7 114 16-155 23-146 (309)
129 3nhm_A Response regulator; pro 52.0 37 0.0012 25.5 6.2 80 78-161 32-115 (133)
130 1qo2_A Molecule: N-((5-phospho 51.8 61 0.0021 28.4 8.5 107 20-154 31-167 (241)
131 3h5i_A Response regulator/sens 51.6 7.9 0.00027 30.0 2.4 82 79-161 35-117 (140)
132 3ks6_A Glycerophosphoryl diest 51.3 12 0.0004 33.8 3.8 47 112-163 195-242 (250)
133 3bw2_A 2-nitropropane dioxygen 51.2 39 0.0013 32.1 7.6 107 22-152 112-238 (369)
134 4g1v_A Flavohemoglobin; three 51.0 24 0.00083 33.4 6.1 105 176-295 148-281 (399)
135 3cwo_X Beta/alpha-barrel prote 50.9 13 0.00045 31.1 3.8 145 22-167 65-222 (237)
136 3ilh_A Two component response 50.6 78 0.0027 23.8 8.4 67 93-161 59-132 (146)
137 3cfy_A Putative LUXO repressor 50.6 82 0.0028 24.1 8.7 81 78-161 33-115 (137)
138 3lte_A Response regulator; str 50.3 54 0.0019 24.4 7.0 65 94-161 50-118 (132)
139 2gkg_A Response regulator homo 50.2 27 0.00093 25.6 5.1 39 121-161 80-118 (127)
140 3rqi_A Response regulator prot 50.1 38 0.0013 27.7 6.5 78 78-161 36-118 (184)
141 1tqj_A Ribulose-phosphate 3-ep 49.9 12 0.00042 33.6 3.6 123 22-164 75-220 (230)
142 1fnb_A Ferredoxin-NADP+ reduct 49.9 43 0.0015 30.5 7.4 103 178-294 38-170 (314)
143 1geq_A Tryptophan synthase alp 49.7 17 0.00057 32.1 4.4 113 22-153 98-222 (248)
144 1krh_A Benzoate 1,2-dioxygenas 49.3 38 0.0013 31.1 7.0 98 177-294 108-218 (338)
145 3r0j_A Possible two component 49.2 63 0.0021 27.8 8.0 81 78-161 52-134 (250)
146 1thf_D HISF protein; thermophI 49.2 48 0.0016 29.0 7.4 115 21-153 32-173 (253)
147 3e0e_A Replication protein A; 48.9 44 0.0015 26.2 6.4 71 253-344 2-73 (97)
148 2iwa_A Glutamine cyclotransfer 48.7 1.3E+02 0.0044 27.7 10.5 126 175-321 49-181 (266)
149 1zh2_A KDP operon transcriptio 48.7 17 0.00059 26.7 3.8 40 121-161 72-111 (121)
150 2z6i_A Trans-2-enoyl-ACP reduc 47.9 41 0.0014 31.5 7.1 107 22-152 78-192 (332)
151 1x1o_A Nicotinate-nucleotide p 47.8 36 0.0012 32.2 6.7 41 122-165 197-237 (286)
152 1fdr_A Flavodoxin reductase; f 47.8 23 0.00079 30.8 5.0 51 240-294 61-114 (248)
153 4dad_A Putative pilus assembly 47.6 41 0.0014 25.8 5.9 67 93-161 66-134 (146)
154 3f6p_A Transcriptional regulat 47.5 18 0.0006 27.2 3.7 39 121-160 73-111 (120)
155 1qkk_A DCTD, C4-dicarboxylate 47.5 92 0.0031 24.1 8.1 80 79-161 33-114 (155)
156 3cu2_A Ribulose-5-phosphate 3- 47.4 46 0.0016 30.4 7.2 128 20-163 80-234 (237)
157 2fli_A Ribulose-phosphate 3-ep 47.3 50 0.0017 28.3 7.0 18 23-40 75-92 (220)
158 1mxs_A KDPG aldolase; 2-keto-3 47.2 41 0.0014 30.3 6.8 108 21-152 40-147 (225)
159 3inp_A D-ribulose-phosphate 3- 47.1 23 0.00078 32.8 5.1 126 22-165 99-243 (246)
160 2hbw_A NLP/P60 protein; NLP/P6 47.0 9.7 0.00033 35.0 2.5 41 226-269 9-49 (235)
161 1xx1_A Smase I, sphingomyelina 46.5 20 0.00068 32.4 4.5 30 12-41 224-254 (285)
162 1eep_A Inosine 5'-monophosphat 46.4 48 0.0017 31.9 7.5 115 20-153 153-287 (404)
163 1q7h_A Conserved hypothetical 46.2 14 0.00048 31.2 3.2 70 216-289 54-129 (153)
164 1zfj_A Inosine monophosphate d 46.0 33 0.0011 33.6 6.3 119 20-153 233-367 (491)
165 2y88_A Phosphoribosyl isomeras 45.5 27 0.00092 30.5 5.1 104 54-163 5-118 (244)
166 2rjn_A Response regulator rece 44.9 1.1E+02 0.0036 23.7 9.6 81 78-161 36-119 (154)
167 2z6i_A Trans-2-enoyl-ACP reduc 44.6 49 0.0017 31.0 7.1 111 20-152 24-138 (332)
168 3cg0_A Response regulator rece 44.5 28 0.00095 26.3 4.5 40 121-161 82-121 (140)
169 1ep3_B Dihydroorotate dehydrog 44.3 41 0.0014 29.8 6.2 100 179-295 7-119 (262)
170 3eod_A Protein HNR; response r 43.4 61 0.0021 24.2 6.2 41 121-162 79-120 (130)
171 3qvq_A Phosphodiesterase OLEI0 43.3 19 0.00066 32.3 3.9 44 112-160 201-245 (252)
172 1vd6_A Glycerophosphoryl diest 43.0 68 0.0023 28.1 7.4 111 21-165 24-142 (224)
173 3no3_A Glycerophosphodiester p 42.8 19 0.00064 32.2 3.7 45 112-161 187-232 (238)
174 2qsj_A DNA-binding response re 42.7 45 0.0015 25.8 5.6 80 78-161 34-117 (154)
175 1p6q_A CHEY2; chemotaxis, sign 42.7 50 0.0017 24.6 5.6 64 94-161 51-120 (129)
176 1xhf_A DYE resistance, aerobic 42.7 29 0.00098 25.7 4.2 40 121-161 74-113 (123)
177 1vrd_A Inosine-5'-monophosphat 42.6 59 0.002 32.0 7.6 112 19-152 236-370 (494)
178 2tps_A Protein (thiamin phosph 42.3 69 0.0023 27.5 7.1 49 94-150 94-142 (227)
179 3gt2_A Putative uncharacterize 42.1 11 0.00037 31.7 1.9 30 327-357 82-111 (142)
180 3ffs_A Inosine-5-monophosphate 41.7 38 0.0013 33.5 6.0 55 94-151 156-212 (400)
181 1dbw_A Transcriptional regulat 40.9 35 0.0012 25.5 4.5 40 121-161 75-114 (126)
182 3snk_A Response regulator CHEY 40.9 48 0.0016 25.1 5.3 40 121-161 87-126 (135)
183 1zcc_A Glycerophosphodiester p 39.6 26 0.00089 31.3 4.1 30 11-40 193-224 (248)
184 2hc8_A PACS, cation-transporti 39.3 14 0.00048 30.0 2.1 30 311-345 11-40 (113)
185 1tmy_A CHEY protein, TMY; chem 39.2 40 0.0014 24.8 4.5 40 121-161 75-114 (120)
186 3mbr_X Glutamine cyclotransfer 38.7 2.3E+02 0.0079 25.9 10.8 80 243-335 106-188 (243)
187 2a9o_A Response regulator; ess 38.6 29 0.001 25.4 3.6 40 121-161 72-111 (120)
188 1yad_A Regulatory protein TENI 38.1 1.9E+02 0.0066 24.8 10.3 51 94-152 88-138 (221)
189 3mm4_A Histidine kinase homolo 37.9 32 0.0011 29.0 4.3 47 120-167 150-196 (206)
190 2qr3_A Two-component system re 37.8 49 0.0017 24.9 4.9 40 121-161 80-119 (140)
191 4hpe_A Putative cell WALL hydr 37.7 15 0.00052 34.8 2.4 31 327-357 241-275 (308)
192 2qxy_A Response regulator; reg 37.3 76 0.0026 24.0 6.0 77 78-161 33-114 (142)
193 1dcf_A ETR1 protein; beta-alph 37.3 45 0.0016 25.2 4.7 38 123-161 85-122 (136)
194 3i42_A Response regulator rece 36.8 29 0.001 25.9 3.5 43 120-164 76-118 (127)
195 3zv0_C H/ACA ribonucleoprotein 36.8 31 0.0011 31.4 4.2 54 235-290 78-135 (195)
196 2g1u_A Hypothetical protein TM 36.7 92 0.0032 25.1 6.7 57 92-154 82-139 (155)
197 3d79_A PUA domain, putative un 36.5 21 0.00072 31.2 2.9 54 234-289 96-154 (179)
198 1jbe_A Chemotaxis protein CHEY 36.3 40 0.0014 25.1 4.1 66 94-161 49-118 (128)
199 2r25_B Osmosensing histidine p 36.3 38 0.0013 25.9 4.1 41 121-162 81-121 (133)
200 3f4w_A Putative hexulose 6 pho 36.0 1.2E+02 0.0041 25.8 7.6 71 94-165 77-157 (211)
201 1xx1_A Smase I, sphingomyelina 35.9 42 0.0014 30.3 4.9 46 111-161 212-260 (285)
202 3nol_A Glutamine cyclotransfer 35.9 1.9E+02 0.0065 26.9 9.5 80 243-335 128-210 (262)
203 4ggc_A P55CDC, cell division c 35.9 48 0.0016 27.9 5.0 10 228-237 7-16 (318)
204 3bo9_A Putative nitroalkan dio 35.8 76 0.0026 29.8 6.9 108 21-152 91-206 (326)
205 2pl1_A Transcriptional regulat 35.8 41 0.0014 24.7 4.1 40 121-161 72-111 (121)
206 3p42_A Predicted protein; beta 35.8 23 0.0008 32.5 3.2 65 201-267 114-200 (236)
207 1a04_A Nitrate/nitrite respons 35.7 1.3E+02 0.0045 24.7 7.7 81 78-161 36-118 (215)
208 3kto_A Response regulator rece 35.4 37 0.0013 25.9 3.9 40 121-161 80-119 (136)
209 3crn_A Response regulator rece 35.3 40 0.0014 25.6 4.1 40 121-161 75-114 (132)
210 3b2n_A Uncharacterized protein 35.1 38 0.0013 25.7 3.9 66 94-161 49-116 (133)
211 3lua_A Response regulator rece 35.0 72 0.0025 24.2 5.5 81 78-162 34-121 (140)
212 2k50_A Replication factor A re 34.8 66 0.0023 25.3 5.4 76 251-345 5-81 (115)
213 3rlg_A Sphingomyelin phosphodi 34.8 49 0.0017 32.0 5.4 30 12-41 241-271 (302)
214 1vc4_A Indole-3-glycerol phosp 34.8 61 0.0021 29.7 5.9 110 22-153 68-183 (254)
215 3cz5_A Two-component response 34.5 94 0.0032 24.0 6.2 81 78-161 36-118 (153)
216 2xz9_A Phosphoenolpyruvate-pro 34.3 1.8E+02 0.006 27.8 9.2 96 67-167 14-159 (324)
217 1ka9_F Imidazole glycerol phos 34.3 1E+02 0.0035 26.9 7.1 122 23-165 35-195 (252)
218 1i3c_A Response regulator RCP1 33.4 42 0.0014 26.1 4.0 40 121-161 91-130 (149)
219 2eix_A NADH-cytochrome B5 redu 33.1 37 0.0013 29.4 3.9 102 176-294 10-124 (243)
220 2pln_A HP1043, response regula 32.7 50 0.0017 25.0 4.2 40 121-161 86-126 (137)
221 3gl9_A Response regulator; bet 32.4 49 0.0017 24.8 4.1 39 121-160 76-114 (122)
222 3l12_A Putative glycerophospho 32.3 30 0.001 32.0 3.4 46 111-161 258-304 (313)
223 1srr_A SPO0F, sporulation resp 31.8 44 0.0015 24.8 3.7 40 121-161 75-114 (124)
224 2nv1_A Pyridoxal biosynthesis 31.5 3.1E+02 0.011 25.2 11.6 28 121-151 125-152 (305)
225 3qll_A Citrate lyase; beta bar 31.4 93 0.0032 29.5 6.7 130 14-156 46-194 (316)
226 1jcn_A Inosine monophosphate d 31.3 1.2E+02 0.004 30.2 7.7 113 20-153 255-389 (514)
227 3m9b_A Proteasome-associated A 31.3 84 0.0029 29.7 6.2 27 251-277 159-186 (251)
228 3r2g_A Inosine 5'-monophosphat 31.2 1.3E+02 0.0044 29.4 7.8 119 20-153 100-230 (361)
229 3h41_A NLP/P60 family protein; 31.1 15 0.00052 34.6 1.2 32 326-357 241-275 (311)
230 3t8y_A CHEB, chemotaxis respon 31.0 58 0.002 26.0 4.5 33 122-154 99-132 (164)
231 1iq8_A Archaeosine tRNA-guanin 31.0 24 0.0008 36.6 2.7 54 234-289 509-566 (582)
232 1y0e_A Putative N-acetylmannos 30.8 1.8E+02 0.006 24.9 7.9 114 22-151 26-146 (223)
233 1izc_A Macrophomate synthase i 30.7 1.2E+02 0.0042 29.1 7.5 29 14-42 45-73 (339)
234 3t6k_A Response regulator rece 30.7 54 0.0018 25.1 4.2 43 122-165 79-122 (136)
235 3heb_A Response regulator rece 30.4 51 0.0018 25.5 4.0 40 121-161 89-128 (152)
236 1vd6_A Glycerophosphoryl diest 30.3 33 0.0011 30.1 3.1 55 95-158 164-219 (224)
237 1q5x_A Regulator of RNAse E ac 30.3 12 0.00043 32.4 0.4 28 254-282 50-77 (161)
238 3bw2_A 2-nitropropane dioxygen 30.1 67 0.0023 30.4 5.5 51 94-151 122-172 (369)
239 1rpx_A Protein (ribulose-phosp 30.1 98 0.0033 26.9 6.2 20 22-41 81-100 (230)
240 3hzh_A Chemotaxis response reg 29.7 54 0.0018 25.8 4.1 40 121-161 111-150 (157)
241 2h6r_A Triosephosphate isomera 29.5 1.1E+02 0.0039 27.0 6.6 113 25-158 75-211 (219)
242 2r6h_A NADH:ubiquinone oxidore 29.4 12 0.00041 33.5 0.1 40 249-294 124-164 (290)
243 2gwr_A DNA-binding response re 29.4 68 0.0023 27.2 5.0 68 94-163 49-117 (238)
244 3ovp_A Ribulose-phosphate 3-ep 29.2 84 0.0029 28.2 5.7 124 22-165 77-217 (228)
245 3n53_A Response regulator rece 29.2 76 0.0026 24.0 4.8 40 121-161 76-115 (140)
246 3usb_A Inosine-5'-monophosphat 29.2 59 0.002 32.8 5.2 145 93-258 267-432 (511)
247 1yio_A Response regulatory pro 28.7 91 0.0031 25.5 5.5 81 78-161 33-115 (208)
248 3pbi_A Invasion protein; pepti 28.5 24 0.00082 32.2 2.0 30 327-357 151-180 (214)
249 3eoo_A Methylisocitrate lyase; 28.4 2.5E+02 0.0086 26.7 9.1 72 94-165 111-206 (298)
250 3vo2_A Putative uncharacterize 28.2 96 0.0033 28.2 6.0 41 250-294 126-166 (310)
251 2rc5_A Ferredoxin-NADP reducta 28.2 18 0.0006 33.0 1.0 42 250-294 131-173 (314)
252 3ne0_A Resuscitation promoting 28.1 26 0.00089 32.0 2.1 30 327-357 151-180 (214)
253 3gsl_A Disks large homolog 4; 28.1 2.4E+02 0.0082 23.0 8.0 21 250-270 44-65 (196)
254 4f3j_A Complement C1Q tumor ne 28.0 2.2E+02 0.0074 23.5 7.7 51 178-232 88-143 (148)
255 2jmz_A Hypothetical protein MJ 27.7 73 0.0025 27.5 4.9 32 239-270 99-132 (186)
256 1mb3_A Cell division response 27.6 56 0.0019 24.0 3.6 40 121-161 75-114 (124)
257 2wnv_C C1Q chain C, complement 27.4 27 0.00093 28.7 2.0 20 329-348 91-110 (131)
258 1wv2_A Thiazole moeity, thiazo 27.1 70 0.0024 30.5 4.9 33 123-158 189-228 (265)
259 4avf_A Inosine-5'-monophosphat 26.9 1.1E+02 0.0036 30.7 6.5 65 83-150 229-297 (490)
260 2wnv_B C1Q chain B, complement 26.9 29 0.00098 28.8 2.0 19 330-348 94-112 (136)
261 3ceu_A Thiamine phosphate pyro 26.9 80 0.0027 27.5 5.0 97 22-152 16-115 (210)
262 1f20_A Nitric-oxide synthase; 26.9 27 0.00091 34.3 2.1 62 227-293 205-286 (435)
263 3sjl_D Methylamine dehydrogena 26.5 3.6E+02 0.012 26.1 10.1 66 247-320 40-117 (386)
264 1vhc_A Putative KHG/KDPG aldol 26.3 20 0.0007 32.4 1.1 33 128-163 76-108 (224)
265 1u5h_A CITE; TIM barrel, struc 26.2 1E+02 0.0035 28.3 5.9 83 74-161 10-102 (273)
266 1id1_A Putative potassium chan 26.2 1.3E+02 0.0046 24.0 6.0 104 22-149 16-123 (153)
267 3ctl_A D-allulose-6-phosphate 26.1 85 0.0029 28.4 5.2 128 22-166 70-218 (231)
268 2zbt_A Pyridoxal biosynthesis 25.7 3.7E+02 0.013 24.2 11.9 114 13-151 22-152 (297)
269 3nfg_A DNA-directed RNA polyme 25.5 17 0.00059 30.0 0.4 27 205-231 18-62 (102)
270 2pcn_A S-adenosylmethionine:2- 25.5 20 0.00069 31.1 0.9 29 254-283 48-76 (161)
271 1gvh_A Flavohemoprotein; oxido 25.5 1.1E+02 0.0038 28.6 6.1 105 176-295 151-268 (396)
272 1jmx_B Amine dehydrogenase; ox 24.6 3.2E+02 0.011 23.1 9.2 71 197-274 2-76 (349)
273 1dz3_A Stage 0 sporulation pro 24.3 39 0.0013 25.4 2.3 39 122-161 78-116 (130)
274 1zcc_A Glycerophosphodiester p 23.8 38 0.0013 30.2 2.4 56 104-163 177-233 (248)
275 3r2g_A Inosine 5'-monophosphat 23.8 61 0.0021 31.6 4.0 54 94-151 112-169 (361)
276 4fdy_A Similar to lipoprotein, 23.8 32 0.0011 33.0 2.0 31 327-357 245-279 (313)
277 2p4v_A Transcription elongatio 23.6 81 0.0028 27.1 4.3 21 332-352 128-148 (158)
278 2bmw_A Ferredoxin--NADP reduct 23.4 21 0.0007 32.3 0.5 41 250-294 116-156 (304)
279 2kij_A Copper-transporting ATP 23.3 38 0.0013 27.8 2.1 35 311-345 17-52 (124)
280 1nxj_A Probable S-adenosylmeth 23.3 23 0.00078 31.6 0.8 29 254-283 79-107 (183)
281 4dql_A Bifunctional P-450/NADP 23.2 32 0.0011 33.4 1.9 39 250-293 207-247 (393)
282 1qks_A Cytochrome CD1 nitrite 22.8 5E+02 0.017 26.0 10.6 167 135-318 92-272 (567)
283 3l4b_C TRKA K+ channel protien 22.5 1.1E+02 0.0039 25.9 5.1 105 22-153 13-121 (218)
284 3m6m_D Sensory/regulatory prot 22.3 91 0.0031 24.1 4.1 40 122-162 91-130 (143)
285 3bmb_A Regulator of nucleoside 22.2 93 0.0032 25.9 4.3 39 313-352 72-119 (136)
286 2hqr_A Putative transcriptiona 22.2 66 0.0023 26.8 3.4 41 121-162 68-109 (223)
287 4dbe_A Orotidine 5'-phosphate 21.9 79 0.0027 28.5 4.1 32 134-165 125-156 (222)
288 3npf_A Putative dipeptidyl-pep 21.7 40 0.0014 31.2 2.2 31 327-357 209-249 (306)
289 3qll_A Citrate lyase; beta bar 21.7 4E+02 0.014 25.1 9.1 90 75-167 49-153 (316)
290 3fn2_A Putative sensor histidi 21.6 1.2E+02 0.0042 25.3 4.8 40 312-357 50-89 (106)
291 2nn6_H Exosome complex exonucl 21.4 1.2E+02 0.0043 28.9 5.5 98 246-347 41-162 (308)
292 1wbh_A KHG/KDPG aldolase; lyas 21.0 29 0.00099 31.0 1.0 79 77-159 22-103 (214)
293 2cw8_A Endonuclease PI-pkoii; 20.8 3.3E+02 0.011 27.4 8.8 79 251-344 40-123 (537)
294 3e61_A Putative transcriptiona 20.8 1.6E+02 0.0055 25.1 5.7 28 135-162 55-83 (277)
295 3m9b_A Proteasome-associated A 20.8 3.3E+02 0.011 25.7 8.1 12 334-345 213-224 (251)
296 1to3_A Putative aldolase YIHT; 20.7 2.7E+02 0.0091 26.1 7.6 15 23-37 112-126 (304)
297 2qv0_A Protein MRKE; structura 20.7 2.7E+02 0.0093 20.8 8.7 64 94-161 55-120 (143)
298 1mvo_A PHOP response regulator 20.1 53 0.0018 24.7 2.2 39 122-161 76-114 (136)
299 2oqr_A Sensory transduction pr 20.0 68 0.0023 26.8 3.1 41 121-162 75-115 (230)
No 1
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=97.50 E-value=0.00038 Score=59.66 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=60.6
Q ss_pred eeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEe----eeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEec
Q 017962 243 HAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAV----VGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVS 318 (363)
Q Consensus 243 HaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~----VGRvKIE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~ 318 (363)
-+-|.+++|.++-++||+.||+||..|.+|+..... ..|-.-..++++-|+.+ +|+.+.+ =++|-=++.
T Consensus 5 ~t~V~~~~G~~k~i~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~----~g~~L~l---Tp~H~i~v~ 77 (145)
T 1at0_A 5 ESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTD----GGAVLTV---TPAHLVSVW 77 (145)
T ss_dssp TCEEEBTTSCEEEGGGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEET----TSCEEEE---CTTCEEEEE
T ss_pred CCEEEeCCCCEeEHHHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEEC----CCCEEEE---eCCCEEEEe
Confidence 357899999999999999999999999999853322 23323234567777653 3544222 122222222
Q ss_pred CCCCCCCCCceeeeeecCCCCEEEEEec
Q 017962 319 PCKGTGEQEKAIPVTSLKVGDEVLLRVQ 346 (363)
Q Consensus 319 p~~~~~~~g~~vsVt~Lk~GD~VL~~~~ 346 (363)
.... .....+.-.+||+||.|++.-.
T Consensus 78 ~~~~--~~~~~v~A~~l~~GD~v~~~~~ 103 (145)
T 1at0_A 78 QPES--QKLTFVFADRIEEKNQVLVRDV 103 (145)
T ss_dssp ETTT--TEEEEEEGGGCCTTCEEEEECT
T ss_pred cCCC--CcEEEEEHHHCcCCCEEEEecC
Confidence 1100 0135678889999999998854
No 2
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=96.49 E-value=0.0089 Score=49.79 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=59.0
Q ss_pred EecCCceeeeeec---cCCCeEEEEcCCCCeeEEeee-eEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCC
Q 017962 247 LVPGGKTCYLSEL---KSGKEVIVVDQKGRQRTAVVG-RVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKG 322 (363)
Q Consensus 247 ~~pggkT~YLSEL---~sG~eVLvVd~~G~~R~~~VG-RvKIE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~p~~~ 322 (363)
.+++|+.+-+.|| +.||+|+..|.+|+.....|= -.+-..+|++.|+.+ +|+.+. --++|==+ ..+
T Consensus 10 ~~~~G~~~~I~~l~~~~~gd~V~s~d~~g~~~~~~v~~~~~~~~~~~~~i~t~----~G~~i~---~T~~H~~~-t~~-- 79 (139)
T 2in0_A 10 DPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIA----GGAILW---ATPDHKVL-TEY-- 79 (139)
T ss_dssp CTTTCCEEEHHHHHHTTCCCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEET----TSCEEE---ECTTCEEE-ETT--
T ss_pred ECCCCCEEEHHHhhCccCCCEEEEECCCCCEEEEEEEEEEEcCCcEEEEEEeC----CCCEEE---ecCCCeEE-ecC--
Confidence 4589999999999 999999999999997544433 334567888888652 465433 33444333 223
Q ss_pred CCCCCceeeeeecCCCCEEEEE
Q 017962 323 TGEQEKAIPVTSLKVGDEVLLR 344 (363)
Q Consensus 323 ~~~~g~~vsVt~Lk~GD~VL~~ 344 (363)
.-+...+||+||.|++.
T Consensus 80 -----gw~~a~~L~~Gd~v~~~ 96 (139)
T 2in0_A 80 -----GWRAAGELRKGDRVAVR 96 (139)
T ss_dssp -----EEEEGGGCCTTCEEEEE
T ss_pred -----CcEEHHHCCCCCEEEeC
Confidence 24678899999999986
No 3
>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2
Probab=96.49 E-value=0.012 Score=49.92 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=62.6
Q ss_pred eEEEecC-Cceeeeeecc--CCCeEEEEcC-CCCeeEEeeeeE-EEeccceeEEEEEecCCCCeEEEEEeEecceEEEec
Q 017962 244 AYVLVPG-GKTCYLSELK--SGKEVIVVDQ-KGRQRTAVVGRV-KIESRPLILVEAKTNSGDQTLYGIILQNAETVALVS 318 (363)
Q Consensus 244 aYv~~pg-gkT~YLSEL~--sG~eVLvVd~-~G~~R~~~VGRv-KIE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~ 318 (363)
+-|.+++ |+.+-+.||. .|++|+.+|. +|+.....|-++ +...+|++.|+.+ +|+.+.+ -++|==++.
T Consensus 8 t~V~~~~~G~~~~I~el~~~~g~~V~s~d~~~g~~~~~~v~~~~~~~~~~~~~i~t~----~G~~i~~---T~~H~~~t~ 80 (158)
T 1mi8_A 8 SLISLASTGKRVSIKDLLDEKDFEIWAINEQTMKLESAKVSRVFMTGKKLVYILKTR----LGRTIKA---TANHRFLTI 80 (158)
T ss_dssp CEEEETTTTEEEESGGGTTCCSCEEEEEETTTTEEEEEECCEEEEEEEEEEEEEEET----TCCEEEE---CTTCEEEET
T ss_pred cEEEecCCCeEEEHHHhhhccCCEEEEEeCCCCEEEEEEeeeeeecCCceEEEEEEC----CCCEEEE---eCCceEEec
Confidence 4678899 9999999999 8999999996 788777666444 3466888888774 4665433 344433433
Q ss_pred CCCCCCCCCceeeeeecCCCCEEEEE
Q 017962 319 PCKGTGEQEKAIPVTSLKVGDEVLLR 344 (363)
Q Consensus 319 p~~~~~~~g~~vsVt~Lk~GD~VL~~ 344 (363)
+ | -+..-+||+||.|++.
T Consensus 81 -~------g-w~~a~~L~~GD~v~~~ 98 (158)
T 1mi8_A 81 -D------G-WKRLDELSLKEHIALP 98 (158)
T ss_dssp -T------E-EEEGGGCCTTCEEEEE
T ss_pred -c------C-CEEhhhCCCCCEEEec
Confidence 3 1 3578899999999985
No 4
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2
Probab=95.81 E-value=0.035 Score=49.55 Aligned_cols=87 Identities=18% Similarity=0.227 Sum_probs=59.9
Q ss_pred eEEEecCCceeeeeeccCCCe--------EEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEE
Q 017962 244 AYVLVPGGKTCYLSELKSGKE--------VIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVA 315 (363)
Q Consensus 244 aYv~~pggkT~YLSEL~sG~e--------VLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sviLQnAETIr 315 (363)
+-|.+++|++.-++||..|++ |+.+|.+|+...+ +.-.+-..+|++.|+.+ +|+.+.+. ++|==
T Consensus 7 T~V~~~dG~~~~I~eL~~G~~~~~~~~v~v~~~d~~g~~~~~-~~~~~~g~k~~~~I~T~----~G~~i~~T---~dH~~ 78 (199)
T 1am2_A 7 ALVALPEGESVRIADIVPGARPNSDNAIDLKVLDRHGNPVLA-DRLFHSGEHPVYAVRTV----EGLRVTGT---ANHPL 78 (199)
T ss_dssp CEEECSTTCEEEGGGSSTTCCTTEEEEEEEEEECTTSCEEEE-EEEEEEEEEEEEEEEET----TSCEEEEC---TTCEE
T ss_pred eEEEcCCCCEEEHHHhhCccccccccceEEEEECCCCCEEEE-EEEEECCCceEEEEEEC----CCCEEEEe---CCCEE
Confidence 457889999999999999998 9999999987765 33334456788888763 36543321 12211
Q ss_pred EecC--CCCCCCCC----ceeeeeecCCCCEEEEE
Q 017962 316 LVSP--CKGTGEQE----KAIPVTSLKVGDEVLLR 344 (363)
Q Consensus 316 Lv~p--~~~~~~~g----~~vsVt~Lk~GD~VL~~ 344 (363)
++.. + | .-+...+||+||.|++.
T Consensus 79 lt~~~~~------g~~~~~w~~a~eLk~GD~v~~~ 107 (199)
T 1am2_A 79 LCLVDVA------GVPTLLWKLIDEIKPGDYAVIQ 107 (199)
T ss_dssp EEEEEET------TEEEEEEEEGGGCCTTCEEEEE
T ss_pred EEeccCC------CccceeEEEhhHCCCCCEEEEC
Confidence 1111 1 2 34678999999999974
No 5
>2imz_A Endonuclease PI-MTUI; N-terminal cysteine sulfinic acid C-terminal aminosuccinimide, hydrolase; 1.70A {Mycobacterium tuberculosis}
Probab=94.06 E-value=0.13 Score=43.81 Aligned_cols=86 Identities=14% Similarity=0.142 Sum_probs=58.6
Q ss_pred eEEEe-cCCceeeeeeccC---CCeEEEEcCCCCeeEEeeee-EEEeccceeEEEEEecCCCCeEEEEEeEecceEEEec
Q 017962 244 AYVLV-PGGKTCYLSELKS---GKEVIVVDQKGRQRTAVVGR-VKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVS 318 (363)
Q Consensus 244 aYv~~-pggkT~YLSEL~s---G~eVLvVd~~G~~R~~~VGR-vKIE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~ 318 (363)
+-|.+ .+|++.-+.||.. |++|+.+|.+|+.....|=+ .+...+|++.|+.+ +|+.+.+ -++|==++
T Consensus 6 t~V~~~~~G~~~~I~el~~~~~~~~V~~~d~~g~~~~~~v~~~~~~~~~~~~~i~t~----~G~~i~~---T~~H~~~t- 77 (168)
T 2imz_A 6 TRIFDPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIA----GGAILWA---TPDHKVLT- 77 (168)
T ss_dssp CEEECTTTCCEEEHHHHHHTTCCCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEET----TSCEEEE---CTTCEEEE-
T ss_pred CEEEECCCCcEEEHHHhhCccCCCEEEEECCCCCEEEEEeeeEEEcCCceEEEEEeC----CCCEEEE---cCCCCEEE-
Confidence 34666 7888999999988 78999999999875444333 34557888888763 4664433 23333233
Q ss_pred CCCCCCCCCceeeeeecCCCCEEEEE
Q 017962 319 PCKGTGEQEKAIPVTSLKVGDEVLLR 344 (363)
Q Consensus 319 p~~~~~~~g~~vsVt~Lk~GD~VL~~ 344 (363)
.+ .-+...+||+||.|++.
T Consensus 78 ~~-------gw~~a~~L~~Gd~v~~~ 96 (168)
T 2imz_A 78 EY-------GWRAAGELRKGDRVAQP 96 (168)
T ss_dssp TT-------EEEEGGGCCTTCEEECC
T ss_pred cc-------CCEEHHHCCCCCEEEEe
Confidence 23 13578899999999864
No 6
>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A*
Probab=93.94 E-value=0.25 Score=42.85 Aligned_cols=91 Identities=13% Similarity=0.113 Sum_probs=62.8
Q ss_pred eEEEecCCceeeeeeccCC-----------------------CeEEEEc-CCCCeeEEeeeeE-EEeccceeEEEEEecC
Q 017962 244 AYVLVPGGKTCYLSELKSG-----------------------KEVIVVD-QKGRQRTAVVGRV-KIESRPLILVEAKTNS 298 (363)
Q Consensus 244 aYv~~pggkT~YLSEL~sG-----------------------~eVLvVd-~~G~~R~~~VGRv-KIE~RPLllIeAe~~~ 298 (363)
+-|++++|.+.=+.||..+ ++|+.+| .+|+.....|=++ +...+||+.|+.+
T Consensus 10 t~V~l~dG~~~~I~el~~~~~~~~~~~g~~~~~~g~~~~~~~~~V~s~d~~~g~~~~~~v~~~~~~~~~~~~~i~t~--- 86 (168)
T 4e2u_A 10 TEVYYENDTVPHMESIEEMYSKYASMNGELPFDNGYAVPLDNVFVYTLDIASGEIKKTRASYIYREKVEKLIEIKLS--- 86 (168)
T ss_dssp CEEEEEETTEEEEEEHHHHHHHHHHHHCCEEETTEEEEECSSEEEEEECTTTCCEEEEECCEEEEEEEEEEEEEEET---
T ss_pred CEEEEeCCCEEEHHHHHhhhhhhccccCceeecccccccCCCeEEEEEeCCCCCEEEEEEeEEEEcCCCeEEEEEEC---
Confidence 4678888988889988773 8999999 7999887766443 4444577777663
Q ss_pred CCCeEEEEEeEecceEEEecCCCCCCCCCceeeeeecCCCCEEEEEec
Q 017962 299 GDQTLYGIILQNAETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQ 346 (363)
Q Consensus 299 ~~g~~~sviLQnAETIrLv~p~~~~~~~g~~vsVt~Lk~GD~VL~~~~ 346 (363)
+|+.+.+ -++|==++..++ ..-+...+||+||.|++.-.
T Consensus 87 -~G~~i~~---T~~Hp~~~~~~~-----~~w~~a~~L~~Gd~l~~~~g 125 (168)
T 4e2u_A 87 -SGYSLKV---TPSHPVLLFRDG-----LQWVPAAEVKPGDVVVGVRN 125 (168)
T ss_dssp -TSCEEEE---CTTCEEEEESSS-----EEEEEGGGCCTTCEEEEEET
T ss_pred -CCCEEEE---CCCCcEEEEcCC-----CEEEEHHHCCCCCEEEeccC
Confidence 4664333 344444443321 25678899999999988653
No 7
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=91.63 E-value=0.31 Score=45.30 Aligned_cols=92 Identities=13% Similarity=0.212 Sum_probs=68.3
Q ss_pred CCeeEEEEEe-cChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhccc---CCCceEEEEcCCHHHHHHHHHHhhccc
Q 017962 70 DRRVGSIIEV-STPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ---GSGKTVFAISKTPSEAQIFLEALEQGL 145 (363)
Q Consensus 70 gk~v~~~~~v-~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q---~~~~~l~a~v~~~~eA~~~~~~LE~G~ 145 (363)
...++.++.+ .+++-.+.++.. ..|+|+++..| .+.|.+.+.+.++ ..+..++..++..+. .....+|+.|+
T Consensus 14 ~~~~g~~~~~~~~p~~~e~a~~~--g~D~vilDlEh-av~~~~k~~~~l~a~~~~~~~~~VRVn~~~~-~di~~~ld~G~ 89 (261)
T 3qz6_A 14 KSVVGTMLNLVYNPDIVRIYAEA--GLDYFIVDCEH-AAYTFREINHLVSVAKNAGVSVLVRIPQVDR-AHVQRLLDIGA 89 (261)
T ss_dssp CCEEEEEESSCCCTTHHHHHHHT--TCSEEEEESSS-SCCCHHHHHHHHHHHHHHTCEEEEECSSCCH-HHHHHHHHHTC
T ss_pred CCEEEEEEecCCCHHHHHHHhcC--CcCEEEEeccC-CCCCHHHHHHHHHHHhhcCCeEEEEeCCCCH-HHHHHHHhcCC
Confidence 3567888888 888887766543 58999997776 4666665554443 235678888887654 35667888999
Q ss_pred CeEEEe-cCCHHHHHHHHHhh
Q 017962 146 GGIVLK-VEDVKAVLALKEYF 165 (363)
Q Consensus 146 dGVvl~-~~d~~ei~~l~~~~ 165 (363)
|||+++ .+++++++++.+.+
T Consensus 90 ~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 90 EGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp CEEEETTCCSHHHHHHHHHHH
T ss_pred CEEEECCcCCHHHHHHHHHHh
Confidence 999997 57899999888876
No 8
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=91.45 E-value=0.89 Score=39.73 Aligned_cols=74 Identities=20% Similarity=0.194 Sum_probs=44.7
Q ss_pred CCCeEEEEc-CCCCeeEEeeeeEEE-e-ccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCCCCCCceeeeeecCC
Q 017962 261 SGKEVIVVD-QKGRQRTAVVGRVKI-E-SRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGEQEKAIPVTSLKV 337 (363)
Q Consensus 261 sG~eVLvVd-~~G~~R~~~VGRvKI-E-~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~p~~~~~~~g~~vsVt~Lk~ 337 (363)
.|.+|+.+| .+|+.+...|=++-- . .++|+.|+.+ +|+.+.+. ++|==++..++ .-..+...+||+
T Consensus 45 ~~~~V~s~d~~~gk~~~~~v~~v~~~~~~~~~~~I~t~----~G~~I~~T---~~H~~~v~~~g----~~~~~~A~eLk~ 113 (185)
T 2lcj_A 45 REIKVYSIDLETGKVVLTDIEDVIKAPATDHLIRFELE----DGRSFETT---VDHPVLVYENG----RFIEKRAFEVKE 113 (185)
T ss_dssp SCEEEEEEETTTTEEEEEEEEEEEEEECCSCEEEEEET----TSCEEEEC---SSSEEEEEETT----EEEEEEGGGCCT
T ss_pred CCcEEEEEECCCCcEEEEEeeeEEEcCCCceEEEEEEC----CCCEEEEC---CCCEEEEecCC----eEEEEEHHHCCC
Confidence 467899999 899888777755543 2 4567777763 35544321 11111221120 013567889999
Q ss_pred CCEEEEEe
Q 017962 338 GDEVLLRV 345 (363)
Q Consensus 338 GD~VL~~~ 345 (363)
||.|++.-
T Consensus 114 GD~v~v~~ 121 (185)
T 2lcj_A 114 GDKVLVSE 121 (185)
T ss_dssp TCEEEECC
T ss_pred CCEEEEcc
Confidence 99999863
No 9
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=90.33 E-value=1.9 Score=40.33 Aligned_cols=118 Identities=15% Similarity=0.180 Sum_probs=69.3
Q ss_pred chhHHHHHHHhCccEEEEcccc--hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceE
Q 017962 21 SKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 98 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~--~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 98 (363)
+...+..|++.|+|++++...+ .+..+++-..+ ..-|.. .++++.+.++++.+... .++++
T Consensus 124 d~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a-------------~~lGl~--~lvev~t~ee~~~A~~~--Gad~I 186 (272)
T 3qja_A 124 QPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRT-------------ESLGMT--ALVEVHTEQEADRALKA--GAKVI 186 (272)
T ss_dssp SHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHH-------------HHTTCE--EEEEESSHHHHHHHHHH--TCSEE
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHH-------------HHCCCc--EEEEcCCHHHHHHHHHC--CCCEE
Confidence 4546789999999999873211 11112111110 011332 45688999988775533 58999
Q ss_pred EEeCCCCee--eehhhhhhcccCC--CceEEEE--cCCHHHHHHHHHHhhcccCeEEEec-----CCHHHH
Q 017962 99 VIDLPDWQV--IPAENIVASFQGS--GKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV 158 (363)
Q Consensus 99 vv~~~dW~i--IPlEnliA~~q~~--~~~l~a~--v~~~~eA~~~~~~LE~G~dGVvl~~-----~d~~ei 158 (363)
-++.+|-+- ..++.+..-.+.. +..+++. +++.++++.+ ++.|+|||++-. +||.+.
T Consensus 187 Gv~~r~l~~~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l---~~~GadgvlVGsal~~a~dp~~~ 254 (272)
T 3qja_A 187 GVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAY---AGAGADAVLVGEGLVTSGDPRAA 254 (272)
T ss_dssp EEESBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHH---HHTTCSEEEECHHHHTCSCHHHH
T ss_pred EECCCcccccccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHH---HHcCCCEEEEcHHHhCCCCHHHH
Confidence 998765322 3444443222222 3456665 4678887754 678999999854 677643
No 10
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=88.44 E-value=1.5 Score=39.11 Aligned_cols=138 Identities=14% Similarity=0.177 Sum_probs=75.1
Q ss_pred CchhHHHHHHHhCccEEEEcccchhhhhhccce------eeeeeeeecCCc--------cccCCCCeeEEEEEecChhhh
Q 017962 20 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTI------ALLDPLFIKEGE--------VYDSGDRRVGSIIEVSTPQEL 85 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i------~~i~~l~~~~g~--------~~~~~gk~v~~~~~v~~~e~~ 85 (363)
.+.+....|++.|++.++..+...........+ ..++.++++|.. .+...|..+. ...+.++.
T Consensus 84 ~~~~~~~~a~~~Ga~dyl~Kp~~~~~~~~~~~~~~~~~~~~~~ILivDD~~~~~~~l~~~L~~~~~~v~---~a~~~~ea 160 (259)
T 3luf_A 84 ISEDKREAWLEAGVLDYVMKDSRHSLQYAVGLVHRLYLNQQIEVLVVDDSRTSRHRTMAQLRKQLLQVH---EASHAREA 160 (259)
T ss_dssp -CHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHTTTCEEE---EESSHHHH
T ss_pred CCHHHHHHHHHCCCcEEEeCCchhHHHHHHHhhhhHhhcCCCcEEEEeCCHHHHHHHHHHHHHcCcEEE---EeCCHHHH
Confidence 367788889999999999887432221111111 123456667763 2355565432 45665542
Q ss_pred hhhccccCCCceEEEeCCCCeeeehhh---hhhccc----CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHH
Q 017962 86 QQLQPADGQAENIVIDLPDWQVIPAEN---IVASFQ----GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAV 158 (363)
Q Consensus 86 e~~~~~~~~~~~vvv~~~dW~iIPlEn---liA~~q----~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei 158 (363)
-.........+.+++ |+.. |-.| ++..+. .....|+....+. +......+++.|+++.+.+|-+++++
T Consensus 161 l~~l~~~~~~dlvll---D~~m-P~~dG~~l~~~lr~~~~~~~~~ii~~s~~~-~~~~~~~a~~~Ga~~yl~KP~~~~~L 235 (259)
T 3luf_A 161 LATLEQHPAIRLVLV---DYYM-PEIDGISLVRMLRERYSKQQLAIIGISVSD-KRGLSARYLKQGANDFLNQPFEPEEL 235 (259)
T ss_dssp HHHHHHCTTEEEEEE---CSCC-SSSCHHHHHHHHHHHCCTTTSEEEEEECSS-SSSHHHHHHHTTCSEEEESSCCHHHH
T ss_pred HHHHhcCCCCCEEEE---cCCC-CCCCHHHHHHHHHhccCCCCCeEEEEEccC-CHHHHHHHHhcChhheEcCCCCHHHH
Confidence 222221112355666 5442 3221 222221 2234565444333 33445678999999999999999887
Q ss_pred HH-HHHhh
Q 017962 159 LA-LKEYF 165 (363)
Q Consensus 159 ~~-l~~~~ 165 (363)
.. ++..+
T Consensus 236 ~~~i~~~l 243 (259)
T 3luf_A 236 QCRVSHNL 243 (259)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 53 34444
No 11
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=88.33 E-value=2.4 Score=39.92 Aligned_cols=93 Identities=11% Similarity=0.097 Sum_probs=65.8
Q ss_pred CCC-eeEEEEEecChhhhhhhccccCCCceEEEeCCCCeeeehhhh---hhcccCCCceEEEEcCCHHHHHHHHHHhhcc
Q 017962 69 GDR-RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENI---VASFQGSGKTVFAISKTPSEAQIFLEALEQG 144 (363)
Q Consensus 69 ~gk-~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnl---iA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G 144 (363)
+|+ .++.++.+.+++..+.++.. ..|+++++..|.. .-.|++ +.+++..+..++..++..+.. ....+|+.|
T Consensus 36 ~G~~~~gl~~~~~~p~~~e~a~~~--GaD~v~lDlEh~~-~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~-di~~~ld~g 111 (287)
T 2v5j_A 36 AGRPQIGLWLGLSSSYSAELLAGA--GFDWLLIDGEHAP-NNVQTVLTQLQAIAPYPSQPVVRPSWNDPV-QIKQLLDVG 111 (287)
T ss_dssp TTCCEEEEEECSCCHHHHHHHHTS--CCSEEEEESSSSS-CCHHHHHHHHHHHTTSSSEEEEECSSSCHH-HHHHHHHTT
T ss_pred CCCcEEEEEEECCCHHHHHHHHhC--CCCEEEEeCCCcc-chHHHHHHHHHHHHhcCCCEEEEECCCCHH-HHHHHHhCC
Confidence 466 78999999999998776542 5899999888762 223333 333344455688888765543 456678899
Q ss_pred cCeEEEe-cCCHHHHHHHHHhh
Q 017962 145 LGGIVLK-VEDVKAVLALKEYF 165 (363)
Q Consensus 145 ~dGVvl~-~~d~~ei~~l~~~~ 165 (363)
+|||+++ .+++++++++.+.+
T Consensus 112 a~~ImlP~V~saeea~~~~~~~ 133 (287)
T 2v5j_A 112 TQTLLVPMVQNADEAREAVRAT 133 (287)
T ss_dssp CCEEEESCCCSHHHHHHHHHHT
T ss_pred CCEEEeCCCCCHHHHHHHHHHh
Confidence 9999996 45688988887765
No 12
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=86.98 E-value=3.5 Score=37.74 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=64.7
Q ss_pred eeEEEEEecChhhhhhhccccCCCceEEEeCCCCeeeehh-----hhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 017962 72 RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAE-----NIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 146 (363)
Q Consensus 72 ~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlE-----nliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~d 146 (363)
.++.+..+.+++..+.++.. ..|+++++..|. |.| ..+.+++..+..++..++..+..- ...+|+.|+|
T Consensus 20 ~~~~~l~v~~p~~~e~a~~~--gaD~v~lDlEd~---p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~-i~~~l~~g~~ 93 (256)
T 1dxe_A 20 QIGCWSALSNPISTEVLGLA--GFDWLVLDGEHA---PNDISTFIPQLMALKGSASAPVVRVPTNEPVI-IKRLLDIGFY 93 (256)
T ss_dssp EEEEEECSCSHHHHHHHTTS--CCSEEEEESSSS---SCCHHHHHHHHHHTTTCSSEEEEECSSSCHHH-HHHHHHTTCC
T ss_pred eEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCC---CCCHHHHHHHHHHHHhCCCcEEEECCCCCHHH-HHHHHhcCCc
Confidence 46788888888887766543 589999988886 653 445555544556888887655443 5678899999
Q ss_pred eEEEe-cCCHHHHHHHHHhhc
Q 017962 147 GIVLK-VEDVKAVLALKEYFD 166 (363)
Q Consensus 147 GVvl~-~~d~~ei~~l~~~~~ 166 (363)
||+++ .+++++++++.+.+.
T Consensus 94 gI~~P~V~s~~ev~~~~~~~~ 114 (256)
T 1dxe_A 94 NFLIPFVETKEEAELAVASTR 114 (256)
T ss_dssp EEEESCCCSHHHHHHHHHTTS
T ss_pred eeeecCcCCHHHHHHHHHHhc
Confidence 99885 457899988887764
No 13
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=86.48 E-value=2.8 Score=38.80 Aligned_cols=92 Identities=8% Similarity=0.076 Sum_probs=64.6
Q ss_pred CC-eeEEEEEecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhh---cccCCCceEEEEcCCHHHHHHHHHHhhccc
Q 017962 70 DR-RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVA---SFQGSGKTVFAISKTPSEAQIFLEALEQGL 145 (363)
Q Consensus 70 gk-~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA---~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~ 145 (363)
|+ .++.+..+.+++..+.++.. ..|+++++..|- ....|.+.+ +++..+..++..++..+. .....+|+.|+
T Consensus 16 g~~~~g~~~~~~~p~~~e~a~~~--GaD~v~lDlE~~-~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~-~~i~~~l~~g~ 91 (267)
T 2vws_A 16 GEVQIGLWLSSTTAYMAEIAATS--GYDWLLIDGEHA-PNTIQDLYHQLQAVAPYASQPVIRPVEGSK-PLIKQVLDIGA 91 (267)
T ss_dssp TCCEEEEEECSCCHHHHHHHHTT--CCSEEEEETTTS-CCCHHHHHHHHHHHTTSSSEEEEECSSCCH-HHHHHHHHTTC
T ss_pred CCCEEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCC-CCCHHHHHHHHHHHHhCCCcEEEEeCCCCH-HHHHHHHHhCC
Confidence 55 57888899999987776543 589999988875 344454433 333345567877775443 33456788999
Q ss_pred CeEEEec-CCHHHHHHHHHhh
Q 017962 146 GGIVLKV-EDVKAVLALKEYF 165 (363)
Q Consensus 146 dGVvl~~-~d~~ei~~l~~~~ 165 (363)
|||+++- +++++++++.+.+
T Consensus 92 ~~I~~P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 92 QTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_dssp CEEEECCCCSHHHHHHHHHHT
T ss_pred CEEEeCCCCCHHHHHHHHHHH
Confidence 9999964 6789998887765
No 14
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=84.83 E-value=0.44 Score=44.26 Aligned_cols=142 Identities=10% Similarity=0.026 Sum_probs=85.5
Q ss_pred cEEEEEe-CchhHHHHHHHhCccEEEEcccch----hhhhh------ccc---eeeeeeeeecCC-ccccCCCCeeEEEE
Q 017962 13 KRVWIWT-ESKQVMTAAVERGWNTFVFLSENQ----QLAID------WST---IALLDPLFIKEG-EVYDSGDRRVGSII 77 (363)
Q Consensus 13 K~vWvw~-~~K~~vt~AlEsG~~~~v~~~~~~----~~~~~------~~~---i~~i~~l~~~~g-~~~~~~gk~v~~~~ 77 (363)
--.|+.. .+.+.+..|..+|+|.++++-||. +++.. +.. +-||++.-..+= ..++ -|-....+=
T Consensus 17 ~g~~~~~~~~p~~~e~a~~~g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~~ld-~G~~gI~lP 95 (261)
T 3qz6_A 17 VGTMLNLVYNPDIVRIYAEAGLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQRLLD-IGAEGFMIP 95 (261)
T ss_dssp EEEEESSCCCTTHHHHHHHTTCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHHHH-HTCCEEEET
T ss_pred EEEEEecCCCHHHHHHHhcCCcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHh-cCCCEEEEC
Confidence 3478888 889999999999999999998772 11111 111 111111000000 0111 122222333
Q ss_pred EecChhhhhhhccccCC-----CceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh-cccCeEEEe
Q 017962 78 EVSTPQELQQLQPADGQ-----AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE-QGLGGIVLK 151 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~-----~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE-~G~dGVvl~ 151 (363)
.|.+++|.+.+...+.. ..+-......|...|+.+-++.. +.+..|++.+.+++-...+-+++. .|+||+.+-
T Consensus 96 ~v~saed~~~~~~~~~~~p~G~Rg~~~~r~~~~g~~~~~~y~~~~-~~~~~v~~mIEt~~av~~~~eIaa~~~vd~l~iG 174 (261)
T 3qz6_A 96 GVQSAETMRETVRLAKYPPLGERGVGGSIVTDFKPVNWAEWVQER-NDEIFIMAQIEHVKAVEDIDSILAVQGVDAVIFG 174 (261)
T ss_dssp TCCSHHHHHHHHHHHSCTTTCCCCCCCGGGGTTCCCCHHHHHHHH-HTTCEEEEEECCHHHHHTHHHHHTSTTCCEEEEC
T ss_pred CcCCHHHHHHHHHHhccCCCCCcCcccchhhhccccchhhHHhcC-CCCeEEEEEECCHHHHHHHHHHhCCCCCCEEEEC
Confidence 47788888776655421 01001123356555666666653 346789999999999999989987 499999998
Q ss_pred cCCHH
Q 017962 152 VEDVK 156 (363)
Q Consensus 152 ~~d~~ 156 (363)
+.|..
T Consensus 175 ~~DL~ 179 (261)
T 3qz6_A 175 PRDLS 179 (261)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 15
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=84.27 E-value=4.4 Score=36.80 Aligned_cols=107 Identities=21% Similarity=0.164 Sum_probs=62.0
Q ss_pred hhHHHHHHHhCccEEEEcccc-------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 017962 22 KQVMTAAVERGWNTFVFLSEN-------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 94 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~-------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~ 94 (363)
.+-+..+++.|+|.+++.... .++.+...+. |.. +..++.+.++.+.+.. ..
T Consensus 91 ~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~-----------------g~~--v~~~v~t~eea~~a~~--~G 149 (229)
T 3q58_A 91 LQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLH-----------------GLL--AMADCSTVNEGISCHQ--KG 149 (229)
T ss_dssp HHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHT-----------------TCE--EEEECSSHHHHHHHHH--TT
T ss_pred HHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHHC-----------------CCE--EEEecCCHHHHHHHHh--CC
Confidence 345778999999988764311 1223222221 333 3447888877655433 35
Q ss_pred CceEEEeCCCCe-----eeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 017962 95 AENIVIDLPDWQ-----VIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 95 ~~~vvv~~~dW~-----iIPlEnliA~~q~~~~~l~a~--v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
++++.++..+.+ --|--+++.++...+..+++. ++++++++.++ +.|+|||++-+
T Consensus 150 ad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~~ipvIA~GGI~t~~d~~~~~---~~GadgV~VGs 211 (229)
T 3q58_A 150 IEFIGTTLSGYTGPITPVEPDLAMVTQLSHAGCRVIAEGRYNTPALAANAI---EHGAWAVTVGS 211 (229)
T ss_dssp CSEEECTTTTSSSSCCCSSCCHHHHHHHHTTTCCEEEESSCCSHHHHHHHH---HTTCSEEEECH
T ss_pred CCEEEecCccCCCCCcCCCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHH---HcCCCEEEEch
Confidence 788865322211 122224444443335567776 56888887765 56999999864
No 16
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=82.49 E-value=6.1 Score=36.12 Aligned_cols=139 Identities=14% Similarity=0.058 Sum_probs=74.4
Q ss_pred EEEEEeCchhHHHHHHHhCccEEEEcccc----hhhhhhccce---eeeee-eeecCCc------cccCCCCeeEEEEEe
Q 017962 14 RVWIWTESKQVMTAAVERGWNTFVFLSEN----QQLAIDWSTI---ALLDP-LFIKEGE------VYDSGDRRVGSIIEV 79 (363)
Q Consensus 14 ~vWvw~~~K~~vt~AlEsG~~~~v~~~~~----~~~~~~~~~i---~~i~~-l~~~~g~------~~~~~gk~v~~~~~v 79 (363)
..|+...+.+.+..|..+|+|.++++-+| ++.++..-.. .-..+ +-+.+.+ .++ .|-.-..+=.|
T Consensus 22 ~~~l~v~~p~~~e~a~~~gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~l~-~g~~gI~~P~V 100 (256)
T 1dxe_A 22 GCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLD-IGFYNFLIPFV 100 (256)
T ss_dssp EEEECSCSHHHHHHHTTSCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHHH-TTCCEEEESCC
T ss_pred EEEEeCCCHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHh-cCCceeeecCc
Confidence 46777788999999999999999998766 2222221110 00000 1111110 111 12111222245
Q ss_pred cChhhhhhhccccCCCceE---E---EeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhc-ccCeEEEec
Q 017962 80 STPQELQQLQPADGQAENI---V---IDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKV 152 (363)
Q Consensus 80 ~~~e~~e~~~~~~~~~~~v---v---v~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~-G~dGVvl~~ 152 (363)
.+++|.+.+.........= + .....|. +++..+..+ +.+..|++.+.+++-...+-+++.. |+||+.+-+
T Consensus 101 ~s~~ev~~~~~~~~~~p~g~Rg~~~~~~~~~~g--~~~~~~~~~-~~~~~v~~~IEt~~av~~~~eIa~~~~vd~l~iG~ 177 (256)
T 1dxe_A 101 ETKEEAELAVASTRYPPEGIRGVSVSHRANMFG--TVADYFAQS-NKNITILVQIESQQGVDNVDAIAATEGVDGIFVGP 177 (256)
T ss_dssp CSHHHHHHHHHTTSCTTTCCCCCCSSSGGGGGG--TSTTHHHHH-TTSCEEEEEECSHHHHHTHHHHHTSTTCCEEEECH
T ss_pred CCHHHHHHHHHHhcCCCCCccCCCcchhhhhcC--chHHHHHhc-CcccEEEEEECCHHHHHhHHHHhCCCCCCEEEECh
Confidence 5666655544433210000 0 0011122 122332222 2456899999999999988898875 999999988
Q ss_pred CCHH
Q 017962 153 EDVK 156 (363)
Q Consensus 153 ~d~~ 156 (363)
.|..
T Consensus 178 ~DL~ 181 (256)
T 1dxe_A 178 SDLA 181 (256)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 17
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=82.37 E-value=2.4 Score=36.80 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=60.6
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceee-ee-eeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEE
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIAL-LD-PLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 99 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~-i~-~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vv 99 (363)
.+.+..+++.|++.+-+...+....+.+.++.. .. ++.+ +. ..+.++++++.+... .++.+.
T Consensus 22 ~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~~~~~l~v-------------g~-g~~~~~~~i~~a~~~--Gad~V~ 85 (212)
T 2v82_A 22 LAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKALI-------------GA-GTVLKPEQVDALARM--GCQLIV 85 (212)
T ss_dssp HHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTTTSEE-------------EE-ECCCSHHHHHHHHHT--TCCEEE
T ss_pred HHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCCeEE-------------Ee-ccccCHHHHHHHHHc--CCCEEE
Confidence 567888899999998876544333332222211 00 1111 11 124567765554432 467776
Q ss_pred EeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 100 IDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 100 v~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
+...+. .++...+..+..++..+.|++|++. +.+.|+|.|.+.+.
T Consensus 86 ~~~~~~------~~~~~~~~~g~~~~~g~~t~~e~~~---a~~~G~d~v~v~~t 130 (212)
T 2v82_A 86 TPNIHS------EVIRRAVGYGMTVCPGCATATEAFT---ALEAGAQALKIFPS 130 (212)
T ss_dssp CSSCCH------HHHHHHHHTTCEEECEECSHHHHHH---HHHTTCSEEEETTH
T ss_pred eCCCCH------HHHHHHHHcCCCEEeecCCHHHHHH---HHHCCCCEEEEecC
Confidence 544332 2333333334456666899999854 46789999998653
No 18
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=81.22 E-value=5.3 Score=37.73 Aligned_cols=114 Identities=13% Similarity=0.201 Sum_probs=69.5
Q ss_pred EeCchhHHHHHHHhCccEEEEccc-chhhh-hhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc-cCC
Q 017962 18 WTESKQVMTAAVERGWNTFVFLSE-NQQLA-IDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA-DGQ 94 (363)
Q Consensus 18 w~~~K~~vt~AlEsG~~~~v~~~~-~~~~~-~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~-~~~ 94 (363)
|..+.+++.++.+.|.-+++.... +.+.. +.+.++... .++.+++-+-+.++...+.+... ..+
T Consensus 36 gvs~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~i~~~-------------~~~p~gVnl~~~~~~~~~~~~~~~~~g 102 (326)
T 3bo9_A 36 WAGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQK-------------TDKPFGVNIILVSPWADDLVKVCIEEK 102 (326)
T ss_dssp TTSCHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHHHHTT-------------CSSCEEEEEETTSTTHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHh-------------cCCCEEEEEeccCCCHHHHHHHHHHCC
Confidence 345688899999999988886542 12211 111112110 02334443334333222222211 236
Q ss_pred CceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 95 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 95 ~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
++.|.+.+.+ | ..++..+...+.+++..+.+.++|+.+ .+.|+|+|++..
T Consensus 103 ~d~V~l~~g~----p-~~~~~~l~~~g~~v~~~v~s~~~a~~a---~~~GaD~i~v~g 152 (326)
T 3bo9_A 103 VPVVTFGAGN----P-TKYIRELKENGTKVIPVVASDSLARMV---ERAGADAVIAEG 152 (326)
T ss_dssp CSEEEEESSC----C-HHHHHHHHHTTCEEEEEESSHHHHHHH---HHTTCSCEEEEC
T ss_pred CCEEEECCCC----c-HHHHHHHHHcCCcEEEEcCCHHHHHHH---HHcCCCEEEEEC
Confidence 8888887765 4 456777776778999999999998865 578999999965
No 19
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=79.91 E-value=2.5 Score=41.14 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=35.7
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
.+|..+|.|.+|++. +++.|+|+|.|++-+++++++..+.+
T Consensus 232 ~kIeVEVdtldea~e---Al~aGaD~I~LDn~~~~~l~~av~~l 272 (320)
T 3paj_A 232 KPVEVETETLAELEE---AISAGADIIMLDNFSLEMMREAVKIN 272 (320)
T ss_dssp SCEEEEESSHHHHHH---HHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHH---HHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 579999999999875 45679999999999999998888776
No 20
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=79.39 E-value=0.91 Score=38.73 Aligned_cols=31 Identities=39% Similarity=0.634 Sum_probs=27.4
Q ss_pred CceeeeeecCCCCEEEEEecCCCcccceeee
Q 017962 327 EKAIPVTSLKVGDEVLLRVQGAARHTGIEIQ 357 (363)
Q Consensus 327 g~~vsVt~Lk~GD~VL~~~~~~gRHfG~~I~ 357 (363)
+++|+..+|||||-|.-+......|+||-+.
T Consensus 60 g~~V~~~~l~pGDLvFf~~~~~~~HVGIyiG 90 (135)
T 2k1g_A 60 GKSVSRSNLRTGDLVLFRAGSTGRHVGIYIG 90 (135)
T ss_dssp SEEECGGGCCTTEEEEEEETTTEEEEEEEEE
T ss_pred CcEecHHHccCCcEEEECCCCCCeEEEEEec
Confidence 7889999999999999887777789999884
No 21
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=78.77 E-value=3.9 Score=39.59 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=64.6
Q ss_pred eeEEEEEecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhh---cccCCC---ceEEEEcCCHHHHHHHHHHhhccc
Q 017962 72 RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVA---SFQGSG---KTVFAISKTPSEAQIFLEALEQGL 145 (363)
Q Consensus 72 ~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA---~~q~~~---~~l~a~v~~~~eA~~~~~~LE~G~ 145 (363)
.++.+..+.+++..+.++.. ..|+++++..|. ....|.+.. +++..+ ..++..+++.+.. ....+|+.|+
T Consensus 43 ~ig~~l~i~~p~~~e~a~~~--GaD~vilDlEha-~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~-di~~~LdaGa 118 (339)
T 1izc_A 43 LMGVAHGIPSTFVTKVLAAT--KPDFVWIDVEHG-MFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEV-SLSTALDAGA 118 (339)
T ss_dssp EEEEEECSCCHHHHHHHHHT--CCSEEEEETTTS-CCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHH-HHHHHHHHTC
T ss_pred EEEEEEECCCHHHHHHHHhC--CCCEEEEECCCC-CCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHH-HHHHHHhCCC
Confidence 57888889999987776543 589999988774 345555433 332112 5688888877654 4466788999
Q ss_pred CeEEEe-cCCHHHHHHHHHhhc
Q 017962 146 GGIVLK-VEDVKAVLALKEYFD 166 (363)
Q Consensus 146 dGVvl~-~~d~~ei~~l~~~~~ 166 (363)
+||+++ .+++++++++++++.
T Consensus 119 ~gImlP~V~saee~~~~~~~~~ 140 (339)
T 1izc_A 119 AGIVIPHVETVEEVREFVKEMY 140 (339)
T ss_dssp SEEEETTCCCHHHHHHHHHHHS
T ss_pred CEEEeCCCCCHHHHHHHHHHhc
Confidence 999985 456899998888764
No 22
>1dfa_A PI-SCEI endonuclease; intein, homing endonuclease, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: b.86.1.2 d.95.2.2 d.95.2.2 PDB: 1lws_A 1lwt_A 1vde_A 1ef0_A 1um2_A 1jva_A
Probab=78.44 E-value=0.67 Score=46.00 Aligned_cols=90 Identities=16% Similarity=0.133 Sum_probs=56.7
Q ss_pred ceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecC--C---------CCeEEEEEeEe
Q 017962 242 VHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNS--G---------DQTLYGIILQN 310 (363)
Q Consensus 242 VHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~--~---------~g~~~sviLQn 310 (363)
-.+.|+|++|.++=+.||+.||+||.. ||+.|.+ ++-+ --.+||.-|.-+.+. + +|. -+-=+
T Consensus 4 ~~T~V~~~dG~~k~I~~i~~Gd~v~~~--dg~~~~v-~~~~-~g~~~~y~v~~~~~~~~~~~~~~~~~~~g~---~i~~t 76 (454)
T 1dfa_A 4 KGTNVLMADGSIECIENIEVGNKVMGK--DGRPREV-IKLP-RGRETMYSVVQKSQHRAHKSDSSREVPELL---KFTCN 76 (454)
T ss_dssp TTCEEEBTTSCEEEGGGCCTTCCBBCT--TSCBCCB-CCCC-CEEEEEEEEEECCSSCCCSCSCTTSCCCCS---EEEEE
T ss_pred CCCeEEeCCCCeeEehhcccCCEEECC--CCCceEE-EEee-eccceeEEEEecccccccccccccccCCCc---EEEEC
Confidence 346799999999999999999998764 5665543 2322 245688888876310 0 244 34445
Q ss_pred cceEEEecCCCCCCCCCceeeeeecCCCCEEEE
Q 017962 311 AETVALVSPCKGTGEQEKAIPVTSLKVGDEVLL 343 (363)
Q Consensus 311 AETIrLv~p~~~~~~~g~~vsVt~Lk~GD~VL~ 343 (363)
++|.=++...+ +..+...+||+||-+-+
T Consensus 77 ~~H~~~~~~~~-----~~~~~~~~l~~gd~~~v 104 (454)
T 1dfa_A 77 ATHELVVRTPR-----SVRRLSRTIKGVEYFEV 104 (454)
T ss_dssp TTCEEEEEEEC-----EEESSSSSCCCSSCCCC
T ss_pred CCCeEEeecCC-----cceeeccccCCCceeeE
Confidence 55555553221 34456677888886643
No 23
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=78.38 E-value=21 Score=33.63 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=72.3
Q ss_pred chhHHHHHHHhCccEEEEcccch--hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceE
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQ--QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 98 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~--~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 98 (363)
+...+..|.+.|+|+++...... +..+++-..+ ..-|. -+++++.+.++++.+... .++.+
T Consensus 131 d~~qi~ea~~~GAD~VlLi~a~L~~~~l~~l~~~a-------------~~lGl--~~lvevh~~eEl~~A~~~--ga~iI 193 (272)
T 3tsm_A 131 DPYQVYEARSWGADCILIIMASVDDDLAKELEDTA-------------FALGM--DALIEVHDEAEMERALKL--SSRLL 193 (272)
T ss_dssp STHHHHHHHHTTCSEEEEETTTSCHHHHHHHHHHH-------------HHTTC--EEEEEECSHHHHHHHTTS--CCSEE
T ss_pred CHHHHHHHHHcCCCEEEEcccccCHHHHHHHHHHH-------------HHcCC--eEEEEeCCHHHHHHHHhc--CCCEE
Confidence 44467889999999988764211 1111111111 11132 356789999998776543 46778
Q ss_pred EEeCCCCee--eeh---hhhhhcccCCCceEEEEc--CCHHHHHHHHHHhhcccCeEEE-----ecCCHHHHHHHHHhh
Q 017962 99 VIDLPDWQV--IPA---ENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGGIVL-----KVEDVKAVLALKEYF 165 (363)
Q Consensus 99 vv~~~dW~i--IPl---EnliA~~q~~~~~l~a~v--~~~~eA~~~~~~LE~G~dGVvl-----~~~d~~ei~~l~~~~ 165 (363)
=++.+|-+- +.+ +.|+..+. .+.-++++. +++++++.+ ++.|+||||+ +++||.+ .+++++
T Consensus 194 Ginnr~l~t~~~dl~~~~~L~~~ip-~~~~vIaesGI~t~edv~~l---~~~Ga~gvLVG~almr~~d~~~--~~~~l~ 266 (272)
T 3tsm_A 194 GVNNRNLRSFEVNLAVSERLAKMAP-SDRLLVGESGIFTHEDCLRL---EKSGIGTFLIGESLMRQHDVAA--ATRALL 266 (272)
T ss_dssp EEECBCTTTCCBCTHHHHHHHHHSC-TTSEEEEESSCCSHHHHHHH---HTTTCCEEEECHHHHTSSCHHH--HHHHHH
T ss_pred EECCCCCccCCCChHHHHHHHHhCC-CCCcEEEECCCCCHHHHHHH---HHcCCCEEEEcHHHcCCcCHHH--HHHHHH
Confidence 777655322 223 34555443 234566654 678888765 6899999998 4677754 344444
No 24
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=77.47 E-value=5.3 Score=35.56 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=61.6
Q ss_pred eeeeEEEEEEEEEcCCcc-eEEEeecC-----CCCCCceEEEeccCceEEEEeeccccCCCC-CCCCeeeecCCceeEEE
Q 017962 175 LSLMKATVTRVDVAGMGD-RVCVDLCS-----LMRPGEGLLVGSFARGLFLVHSECLESNYI-ASRPFRVNAGPVHAYVL 247 (363)
Q Consensus 175 l~L~~atVt~V~~vGmGd-RVCVDtcs-----ll~~GEGmLVGs~s~glfLVhsEt~e~~Yv-a~RPFRVNAGaVHaYv~ 247 (363)
....+++|++++.+.-.- ++.+..-. -+.||+=+.+--. ...+....||. ++-|- +.|-++=.|.
T Consensus 14 ~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~------~~g~~~~R~ySi~s~~~--~~~~~~l~vk 85 (275)
T 1umk_A 14 DIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSAR------IDGNLVVRPYTPISSDD--DKGFVDLVIK 85 (275)
T ss_dssp TCCEEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEE------ETTEEEEEEECCSSCTT--CCSEEEEEEE
T ss_pred CccEEEEEEEEEEcCCCeEEEEEEcCCcccccCCCCCcEEEEEEe------eCCcEEEeccccCCccC--CCCeEEEEEE
Confidence 345688999999886432 23444221 2345543332100 01111223442 33231 3355555666
Q ss_pred ec-----------CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEE-----------eccceeEEEE
Q 017962 248 VP-----------GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKI-----------ESRPLILVEA 294 (363)
Q Consensus 248 ~p-----------ggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKI-----------E~RPLllIeA 294 (363)
.- |.-|+||++|+.||+|.+-...|+...-.=|.-.+ ..+|++||=+
T Consensus 86 ~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliag 154 (275)
T 1umk_A 86 VYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAG 154 (275)
T ss_dssp CCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEE
T ss_pred EeccCcccccCCCChhHHHHhcCCCCCEEEEEcCccceEecCCccccccccccccccccCCceEEEEec
Confidence 53 66799999999999999988888753211111111 4678888855
No 25
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=76.91 E-value=15 Score=33.78 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=50.9
Q ss_pred CCeeEEEEEecChhhhhhhccccCCCceEEEeC---CC----CeeeehhhhhhcccC--CCceEEEEcC-CHHHHHHHHH
Q 017962 70 DRRVGSIIEVSTPQELQQLQPADGQAENIVIDL---PD----WQVIPAENIVASFQG--SGKTVFAISK-TPSEAQIFLE 139 (363)
Q Consensus 70 gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~---~d----W~iIPlEnliA~~q~--~~~~l~a~v~-~~~eA~~~~~ 139 (363)
++.++. .+.+.++...+.. ..+||+.+.. ++ -....++.+-...+. .+..++|.-. +.+++ -+
T Consensus 135 ~~~iG~--S~ht~~Ea~~A~~--~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI~~~ni---~~ 207 (243)
T 3o63_A 135 DTLIGR--STHDPDQVAAAAA--GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGINAQRL---PA 207 (243)
T ss_dssp TCEEEE--EECSHHHHHHHHH--SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSCCTTTH---HH
T ss_pred CCEEEE--eCCCHHHHHHHhh--CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCCCHHHH---HH
Confidence 555665 5788887655443 3689999943 11 113455544332222 2456777632 45544 45
Q ss_pred HhhcccCeEEE-----ecCCHH-HHHHHHHhh
Q 017962 140 ALEQGLGGIVL-----KVEDVK-AVLALKEYF 165 (363)
Q Consensus 140 ~LE~G~dGVvl-----~~~d~~-ei~~l~~~~ 165 (363)
+++.|+|||.+ ..+||. .+++|++.+
T Consensus 208 ~~~aGa~gvav~sai~~a~dp~~a~~~l~~~~ 239 (243)
T 3o63_A 208 VLDAGARRIVVVRAITSADDPRAAAEQLRSAL 239 (243)
T ss_dssp HHHTTCCCEEESHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 67889999997 456774 455555544
No 26
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=76.00 E-value=4.3 Score=41.34 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=30.9
Q ss_pred CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017962 119 GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 156 (363)
Q Consensus 119 ~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ 156 (363)
+.+..|++...+++-..-+-++++. +|||++.+.|.+
T Consensus 212 ~~~i~IiakIEt~eav~nldeI~~~-sDgImVargDLg 248 (470)
T 1e0t_A 212 GENIHIISKIENQEGLNNFDEILEA-SDGIMVARGDLG 248 (470)
T ss_dssp CTTCEEEEEECSHHHHHTHHHHHHH-SSEEEEEHHHHH
T ss_pred CCCceEEEEECCHHHHHhHHHHHHH-CCEEEECchHhh
Confidence 3467899999999888888888887 999999998764
No 27
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=75.87 E-value=2.5 Score=39.63 Aligned_cols=114 Identities=12% Similarity=0.115 Sum_probs=59.4
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCceEEE
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~e~~e~~~~~~~~~~~vvv 100 (363)
...+..+.|+|+|++++++-..+...++... ++..|.....++.- ++.+.++.++.... +++-+
T Consensus 113 e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~-------------~~~~gl~~i~liaP~t~~eri~~i~~~~~--gfvY~ 177 (267)
T 3vnd_A 113 DEFYTKAQAAGVDSVLIADVPVEESAPFSKA-------------AKAHGIAPIFIAPPNADADTLKMVSEQGE--GYTYL 177 (267)
T ss_dssp HHHHHHHHHHTCCEEEETTSCGGGCHHHHHH-------------HHHTTCEEECEECTTCCHHHHHHHHHHCC--SCEEE
T ss_pred HHHHHHHHHcCCCEEEeCCCCHhhHHHHHHH-------------HHHcCCeEEEEECCCCCHHHHHHHHHhCC--CcEEE
Confidence 5678999999999999986433322222222 12223332222222 33455555555432 23333
Q ss_pred -e-----CCCCeee-ehhhhhhcccCCCc-eEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 101 -D-----LPDWQVI-PAENIVASFQGSGK-TVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 101 -~-----~~dW~iI-PlEnliA~~q~~~~-~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
. +..-.+. ++.++++++..... .++. .++++++|+ ..++.|+|||++-+-
T Consensus 178 vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~---~~~~~gADgvVVGSa 237 (267)
T 3vnd_A 178 LSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVR---AAIKAGAAGAISGSA 237 (267)
T ss_dssp SCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHH---HHHHTTCSEEEECHH
T ss_pred EecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHH---HHHHcCCCEEEECHH
Confidence 1 1111122 36777887654422 2332 355666665 456789999999763
No 28
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=75.72 E-value=14 Score=32.85 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=59.8
Q ss_pred chhHHHHHHHhCccEEEEcccch---------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQ---------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 91 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~---------~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~ 91 (363)
..+++..+.+.|++.+.+...+. +..+++.+-.- -|+.+.+ -+.++++++.+..
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~-iPvi~~g---------------gi~~~~~i~~~~~- 94 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTT-LPIIASG---------------GAGKMEHFLEAFL- 94 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCC-SCEEEES---------------CCCSTHHHHHHHH-
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHHHHhcC-CCEEEEC---------------CCCCHHHHHHHHH-
Confidence 46788899999999988854221 22222222110 1333322 2667788776553
Q ss_pred cCCCceEEEeCCCC-eeeehhhhhhcccCCC---ceEEEEcCC-------------------HHHHHHHHHHhhcccCeE
Q 017962 92 DGQAENIVIDLPDW-QVIPAENIVASFQGSG---KTVFAISKT-------------------PSEAQIFLEALEQGLGGI 148 (363)
Q Consensus 92 ~~~~~~vvv~~~dW-~iIPlEnliA~~q~~~---~~l~a~v~~-------------------~~eA~~~~~~LE~G~dGV 148 (363)
. .++.+++-...- ..|+++.+...++..+ .+++..+.. ....+.+..+.+.|++.|
T Consensus 95 ~-Gad~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i 173 (266)
T 2w6r_A 95 A-GADKALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEI 173 (266)
T ss_dssp H-TCSEEECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEE
T ss_pred c-CCcHhhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEE
Confidence 2 478888866665 4556565555433322 233222221 122344556678999999
Q ss_pred EEec
Q 017962 149 VLKV 152 (363)
Q Consensus 149 vl~~ 152 (363)
++..
T Consensus 174 ~~t~ 177 (266)
T 2w6r_A 174 LLTS 177 (266)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9864
No 29
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=75.69 E-value=9.9 Score=34.46 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=59.6
Q ss_pred hhHHHHHHHhCccEEEEcccc-------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 017962 22 KQVMTAAVERGWNTFVFLSEN-------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 94 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~-------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~ 94 (363)
.+-+..+++.|+|.+++.... .++.+...+. |.. +..++.+.++.+.+.. ..
T Consensus 91 ~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~-----------------g~~--v~~~v~t~eea~~a~~--~G 149 (232)
T 3igs_A 91 LDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHH-----------------HLL--TMADCSSVDDGLACQR--LG 149 (232)
T ss_dssp HHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHT-----------------TCE--EEEECCSHHHHHHHHH--TT
T ss_pred HHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHC-----------------CCE--EEEeCCCHHHHHHHHh--CC
Confidence 345788999999988764311 2223222221 333 3347888877655433 25
Q ss_pred CceEEEeCCCCe-----eeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 017962 95 AENIVIDLPDWQ-----VIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 95 ~~~vvv~~~dW~-----iIPlEnliA~~q~~~~~l~a~--v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
++++.+...+.+ --|--+++.++...+..+++. +++.++++.++ +.|+|||++-+
T Consensus 150 ad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~~ipvIA~GGI~t~~d~~~~~---~~GadgV~VGs 211 (232)
T 3igs_A 150 ADIIGTTMSGYTTPDTPEEPDLPLVKALHDAGCRVIAEGRYNSPALAAEAI---RYGAWAVTVGS 211 (232)
T ss_dssp CSEEECTTTTSSSSSCCSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHH---HTTCSEEEECH
T ss_pred CCEEEEcCccCCCCCCCCCCCHHHHHHHHhcCCcEEEECCCCCHHHHHHHH---HcCCCEEEEeh
Confidence 777764322111 112112333332224567766 45788887765 56999999864
No 30
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=74.95 E-value=16 Score=28.24 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=45.8
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCee--eehhhhhhcccCC-CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQV--IPAENIVASFQGS-GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 154 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~i--IPlEnliA~~q~~-~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d 154 (363)
...+.++.-.... ....+.++++ +.. ..--.++..+... ...++...... +...+..+++.|+++++.+|-+
T Consensus 33 ~~~~~~~al~~~~-~~~~dlvllD---~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~-~~~~~~~~~~~ga~~~l~KP~~ 107 (136)
T 2qzj_A 33 LAYNCEEAIGKIF-SNKYDLIFLE---IILSDGDGWTLCKKIRNVTTCPIVYMTYIN-EDQSILNALNSGGDDYLIKPLN 107 (136)
T ss_dssp EESSHHHHHHHHH-HCCCSEEEEE---SEETTEEHHHHHHHHHTTCCCCEEEEESCC-CHHHHHHHHHTTCCEEEESSCC
T ss_pred EECCHHHHHHHHH-hcCCCEEEEe---CCCCCCCHHHHHHHHccCCCCCEEEEEcCC-CHHHHHHHHHcCCcEEEECCCC
Confidence 4555554333222 2246777773 332 1222344444332 34565554443 3456678899999999999999
Q ss_pred HHHHHHH
Q 017962 155 VKAVLAL 161 (363)
Q Consensus 155 ~~ei~~l 161 (363)
++++.+.
T Consensus 108 ~~~L~~~ 114 (136)
T 2qzj_A 108 LEILYAK 114 (136)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 31
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=74.77 E-value=4.6 Score=38.68 Aligned_cols=42 Identities=10% Similarity=-0.101 Sum_probs=35.9
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
..+|..++.|.+||+.+ ++.|+|.|+|+.-+++++++..+.+
T Consensus 198 ~~~IeVEv~tl~ea~eA---l~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 198 NKVVEVEVTNLDELNQA---IAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp TSCEEEEESSHHHHHHH---HHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred CCcEEEEeCCHHHHHHH---HHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 46899999999988755 5569999999999999998877766
No 32
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=73.79 E-value=4.7 Score=38.98 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=36.5
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 166 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~~ 166 (363)
..+|..+|.|.+||+.++ +.|+|.|+|+.=+++++++..+.+.
T Consensus 207 ~~kIeVEv~tl~e~~eAl---~aGaDiImLDn~s~~~l~~av~~~~ 249 (300)
T 3l0g_A 207 NEYIAIECDNISQVEESL---SNNVDMILLDNMSISEIKKAVDIVN 249 (300)
T ss_dssp SCCEEEEESSHHHHHHHH---HTTCSEEEEESCCHHHHHHHHHHHT
T ss_pred CCCEEEEECCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHhhc
Confidence 468999999999987665 5699999999999999988777663
No 33
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=73.75 E-value=6.2 Score=33.88 Aligned_cols=121 Identities=18% Similarity=0.134 Sum_probs=70.2
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEEe
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 101 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~ 101 (363)
.+++..+.+.|++.+-+.-......+.+..+... .+ +++.++. ..+.++++.+.+.. ..+|++ +
T Consensus 25 ~~~~~~~~~~G~~~iev~~~~~~~~~~i~~ir~~----------~~-~~~~ig~-~~v~~~~~~~~a~~--~Gad~i-v- 88 (205)
T 1wa3_A 25 KEKALAVFEGGVHLIEITFTVPDADTVIKELSFL----------KE-KGAIIGA-GTVTSVEQCRKAVE--SGAEFI-V- 88 (205)
T ss_dssp HHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHH----------HH-TTCEEEE-ESCCSHHHHHHHHH--HTCSEE-E-
T ss_pred HHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHH----------CC-CCcEEEe-cccCCHHHHHHHHH--cCCCEE-E-
Confidence 5677788888999886643221111111111111 01 1233332 13567777554443 358888 4
Q ss_pred CCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 102 LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 102 ~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
...|. .+++...+..+..++..+.|.+|++. +++.|+|.|-+.+.++..+..++++.
T Consensus 89 ~~~~~----~~~~~~~~~~g~~vi~g~~t~~e~~~---a~~~Gad~vk~~~~~~~g~~~~~~l~ 145 (205)
T 1wa3_A 89 SPHLD----EEISQFCKEKGVFYMPGVMTPTELVK---AMKLGHTILKLFPGEVVGPQFVKAMK 145 (205)
T ss_dssp CSSCC----HHHHHHHHHHTCEEECEECSHHHHHH---HHHTTCCEEEETTHHHHHHHHHHHHH
T ss_pred cCCCC----HHHHHHHHHcCCcEECCcCCHHHHHH---HHHcCCCEEEEcCccccCHHHHHHHH
Confidence 33443 46677666667789999999998765 57899999988775444444444443
No 34
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=73.51 E-value=9.4 Score=35.88 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=30.7
Q ss_pred CceEEEEcCCHHHHHHHHHHhhc-ccCeEEEecCCHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDVK 156 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~-G~dGVvl~~~d~~ 156 (363)
+..|++.+.+++-...+-+++.. |+||+.+-+.|..
T Consensus 166 ~~~vi~mIEt~~av~n~deIaa~~~vD~l~iG~~DLs 202 (287)
T 2v5j_A 166 QMCVLVQIETREAMKNLPQILDVEGVDGVFIGPADLS 202 (287)
T ss_dssp HCEEEEEECSHHHHHTHHHHHTSTTEEEEEECHHHHH
T ss_pred CcEEEEEECcHHHHHHHHHHhCcCCCCEEEECHHHHH
Confidence 46799999999999999899875 9999999887654
No 35
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=73.04 E-value=12 Score=34.40 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=30.3
Q ss_pred CceEEEEcCCHHHHHHHHHHhhc-ccCeEEEecCCHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDVK 156 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~-G~dGVvl~~~d~~ 156 (363)
+..|++.+.+++-...+-+++.. |+||+.+-+.|..
T Consensus 145 ~~~v~~~IEt~~av~~~~eIa~~~gvd~l~iG~~DL~ 181 (267)
T 2vws_A 145 SLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLS 181 (267)
T ss_dssp HCEEEEECCSHHHHHTHHHHHTSTTCCEEEECHHHHH
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCCCCEEEEChHHHH
Confidence 35799999999999888888875 8999999887654
No 36
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=72.86 E-value=37 Score=30.64 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=66.6
Q ss_pred hhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCceEE
Q 017962 22 KQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIV 99 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~~~~~~~vv 99 (363)
.++..++.+.|+.++.+.. ++...+++..++-++... .++ .. |.. +-|+ +.++.+++. ...++.|+
T Consensus 39 ~~~A~a~~~~Ga~~i~~~~~~~i~~ir~~v~~Pvig~~-k~d---~~--~~~----~~I~~~~~~i~~~~--~~Gad~V~ 106 (232)
T 3igs_A 39 AAMALAAEQAGAVAVRIEGIDNLRMTRSLVSVPIIGII-KRD---LD--ESP----VRITPFLDDVDALA--QAGAAIIA 106 (232)
T ss_dssp HHHHHHHHHTTCSEEEEESHHHHHHHHTTCCSCEEEEC-BCC---CS--SCC----CCBSCSHHHHHHHH--HHTCSEEE
T ss_pred HHHHHHHHHCCCeEEEECCHHHHHHHHHhcCCCEEEEE-eec---CC--Ccc----eEeCccHHHHHHHH--HcCCCEEE
Confidence 5677788889999988864 223333333333222110 010 00 100 0122 334444432 23688888
Q ss_pred EeCC---CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017962 100 IDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 150 (363)
Q Consensus 100 v~~~---dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl 150 (363)
+... +. -.++.++..+...+-.+++.+.+.+||+.+ ++.|+|-|..
T Consensus 107 l~~~~~~~p--~~l~~~i~~~~~~g~~v~~~v~t~eea~~a---~~~Gad~Ig~ 155 (232)
T 3igs_A 107 VDGTARQRP--VAVEALLARIHHHHLLTMADCSSVDDGLAC---QRLGADIIGT 155 (232)
T ss_dssp EECCSSCCS--SCHHHHHHHHHHTTCEEEEECCSHHHHHHH---HHTTCSEEEC
T ss_pred ECccccCCH--HHHHHHHHHHHHCCCEEEEeCCCHHHHHHH---HhCCCCEEEE
Confidence 8664 23 257788888877677899999999999755 5789999863
No 37
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5
Probab=72.34 E-value=11 Score=34.74 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=65.2
Q ss_pred eeEEEEEecChhhhhhhccccCCCceEEEeCCCCeeee--------hhhhhhcccC-----CCceEEEEcCCHH---HHH
Q 017962 72 RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIP--------AENIVASFQG-----SGKTVFAISKTPS---EAQ 135 (363)
Q Consensus 72 ~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIP--------lEnliA~~q~-----~~~~l~a~v~~~~---eA~ 135 (363)
+...|+...+++.++.+.. ..+|.++++..| .+.| .+|+.+.++. .+..++..++..+ ...
T Consensus 9 rs~L~~p~~~~~~~~~a~~--~gaD~vilDlEd-av~~~~~~k~~Ar~~v~~~l~~~~~~~~~~~~~VRv~~~~~~~~~~ 85 (284)
T 1sgj_A 9 RSVLFAPGNRADLIAKLPR--SAPDAVVIDLED-AVPGTAEAKAAARPVAHDAARDLIAAAPHLAVFVRVNALHSPYFED 85 (284)
T ss_dssp SEEEEEETTCHHHHHHTTT--TCCSEEEEESST-TSCSSHHHHHHHHHHHHHHHHHHHHHSTTSEEEEECCCTTSTTHHH
T ss_pred ceEEEccCCCHHHHHHHHh--CCCCEEEEECCC-CCCCchhhHHHHHHHHHHHHHhcccccCCCeEEEEeCCCCCHhHHH
Confidence 4567788888888777653 358999998888 4566 6788776653 2356888888644 233
Q ss_pred HHHHHhhcccCeEEEec-CCHHHHHHHHHhhc
Q 017962 136 IFLEALEQGLGGIVLKV-EDVKAVLALKEYFD 166 (363)
Q Consensus 136 ~~~~~LE~G~dGVvl~~-~d~~ei~~l~~~~~ 166 (363)
-...+|+ |.|||+|+- ++++++.++.+++.
T Consensus 86 dl~~~l~-g~~~i~lPkv~s~~~v~~~~~~l~ 116 (284)
T 1sgj_A 86 DLSVLTP-ELSGVVVPKLEMGAEARQVAQMLQ 116 (284)
T ss_dssp HGGGCCT-TSSEEEECSCCSHHHHHHHHHHHH
T ss_pred HHHHHhc-cCCEEEeCCCCCHHHHHHHHHHHH
Confidence 4455667 999999964 46899988888774
No 38
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=71.70 E-value=9.2 Score=33.49 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=64.3
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEE----ecCCCCeEE----EEEeEecceEEEe
Q 017962 246 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK----TNSGDQTLY----GIILQNAETVALV 317 (363)
Q Consensus 246 v~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe----~~~~~g~~~----sviLQnAETIrLv 317 (363)
+.+||+.-...+|..+|.-+..- +|+-+....|.+++ +.+++-|+.. +... |..+ .-+-++-+.|.|.
T Consensus 3 iV~PGd~l~~~~~~~~G~Gty~~--~~~i~as~~G~v~~-~~~~v~V~~~~~~~y~p~-GdiV~G~V~~V~~~ga~V~I~ 78 (179)
T 3m7n_A 3 FVMPGDRIGSAEEYVKGEGVYEE--GGELFAAVAGKLII-KDRVAKVESISPIPEIVK-GDVVLGRVVDLRNSIALIEVS 78 (179)
T ss_dssp EECTTCEEEETTTSEECTTEEEE--TTEEEESSSEEEEE-ETTEEEEEESSCCCCCCT-TCEEEEEEEEECSSEEEEEEE
T ss_pred EEcCCCCCCCCCCEeccCCEEEe--CCEEEEEEEEEEEE-eCCEEEEEECCCCcccCC-CCEEEEEEEEEeCCcEEEEEc
Confidence 46799988888888888887765 68999999999998 6678877763 2222 5442 3345667788876
Q ss_pred cCCCCCCC----CCceeeee------------ecCCCCEEEEEecC
Q 017962 318 SPCKGTGE----QEKAIPVT------------SLKVGDEVLLRVQG 347 (363)
Q Consensus 318 ~p~~~~~~----~g~~vsVt------------~Lk~GD~VL~~~~~ 347 (363)
.-.++..+ -...+.+. .|++||.|.+++..
T Consensus 79 ~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 79 SKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG 124 (179)
T ss_dssp EETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE
T ss_pred cccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC
Confidence 51100000 01123332 37999999999876
No 39
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=71.48 E-value=4.2 Score=37.31 Aligned_cols=114 Identities=8% Similarity=0.064 Sum_probs=57.9
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCceEEE
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~e~~e~~~~~~~~~~~vvv 100 (363)
...+..+.+.|+|++++++...+...++-+. +++.|.....++.- ++.+.++.++.... +++.+
T Consensus 112 ~~~~~~~~~aGadgii~~d~~~e~~~~~~~~-------------~~~~g~~~i~l~~p~t~~~~i~~i~~~~~--g~v~~ 176 (268)
T 1qop_A 112 DAFYARCEQVGVDSVLVADVPVEESAPFRQA-------------ALRHNIAPIFICPPNADDDLLRQVASYGR--GYTYL 176 (268)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGCHHHHHH-------------HHHTTCEEECEECTTCCHHHHHHHHHHCC--SCEEE
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHHHHHH-------------HHHcCCcEEEEECCCCCHHHHHHHHhhCC--CcEEE
Confidence 5788899999999999986443222222111 12223322222222 33455555555432 23333
Q ss_pred eC----CCC---eeeehhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 101 DL----PDW---QVIPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 101 ~~----~dW---~iIPlEnliA~~q~~-~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
.. ++- ..-++..+|+.+.+. +..|+. .+++++.++ .+++.|+|||++-+-
T Consensus 177 ~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~---~~~~agAD~vVVGSa 236 (268)
T 1qop_A 177 LSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVS---AAVRAGAAGAISGSA 236 (268)
T ss_dssp ESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHH---HHHHTTCSEEEECHH
T ss_pred EecCCcCCCccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHH---HHHHcCCCEEEEChH
Confidence 21 111 123345566665433 223333 345566655 456789999998653
No 40
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=71.31 E-value=4.4 Score=41.26 Aligned_cols=135 Identities=12% Similarity=0.101 Sum_probs=87.9
Q ss_pred CchhHHH--HHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCc
Q 017962 20 ESKQVMT--AAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 96 (363)
Q Consensus 20 ~~K~~vt--~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~ 96 (363)
.|++.+. .|++.|+|.+.++. .+++.+.++.++ +.+.|..+..+.+|.+++-++.+..-+...|
T Consensus 182 kD~~dl~~~~~~~~~vD~Ia~SfVr~a~Dv~~~r~~-------------l~~~g~~~~iiaKIE~~eav~nldeIl~~sD 248 (461)
T 3qtg_A 182 EDVEALKAISPIRDNIDYVAISLAKSCKDVDSVRSL-------------LTELGFQSQVAVKIETKGAVNNLEELVQCSD 248 (461)
T ss_dssp HHHHHHHHHGGGGGGCCEEEECSCCSHHHHHHHHHH-------------HHHTTCCCEEEEEECSHHHHHTHHHHHHTCS
T ss_pred HHHHHHHHHHHhhcCCCEEEecCCCCHHHHHHHHHH-------------HHhcCCCceEEEEECCHHHHHhHHHHHHhcc
Confidence 4677888 89999999888774 234444444332 3333455678889999999888777666678
Q ss_pred eEEEeCCCCe-eeehhhh-------hhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC---
Q 017962 97 NIVIDLPDWQ-VIPAENI-------VASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED--- 154 (363)
Q Consensus 97 ~vvv~~~dW~-iIPlEnl-------iA~~q~~~~~l~a~-----------v~~~~eA~~~~~~LE~G~dGVvl~~~d--- 154 (363)
-+++-..|-- =||+|.+ |.+....+.-++.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 249 gImVaRGDLgvei~~e~v~~~Qk~ii~~~~~~gkpvi~ATQMLeSMi~~p~PTRAEvsDVanAV~dGaDavMLSgETA~G 328 (461)
T 3qtg_A 249 YVVVARGDLGLHYGLDALPIVQRRIVHTSLKYGKPIAVATQLLDSMQSSPIPTRAEINDVFTTASMGVDSLWLTNETASG 328 (461)
T ss_dssp EEEEEHHHHTTTSCTTTHHHHHHHHHHHHHHTTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHTTCSEEEECHHHHTS
T ss_pred cEEEccccccccCCHHHHHHHHHHHHHHHHHhCCCEEEeccchHhhccCCCccHHHHHHHHHHHHhCCcEEEEcccccCC
Confidence 8888543322 1355554 33332233334431 245678888899999999999998432
Q ss_pred ---HHHHHHHHHhhcc
Q 017962 155 ---VKAVLALKEYFDG 167 (363)
Q Consensus 155 ---~~ei~~l~~~~~~ 167 (363)
.+.|+-+.+++.+
T Consensus 329 ~yPveaV~~m~~I~~~ 344 (461)
T 3qtg_A 329 KYPLAAVSWLSRILMN 344 (461)
T ss_dssp SCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3666666777643
No 41
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=71.29 E-value=9.8 Score=38.19 Aligned_cols=115 Identities=14% Similarity=0.154 Sum_probs=70.4
Q ss_pred EeCchhHHHHHHHhCccEEEEcccch------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017962 18 WTESKQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 91 (363)
Q Consensus 18 w~~~K~~vt~AlEsG~~~~v~~~~~~------~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~ 91 (363)
+.+..+.+...++.|+|.+.+...+. +.++++.+. .| +.++.. ..+.+.++...+..
T Consensus 227 ~~~~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~---~p------------~~~Vi~-g~v~t~e~a~~l~~- 289 (490)
T 4avf_A 227 GADTGERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQT---FP------------DVQVIG-GNIATAEAAKALAE- 289 (490)
T ss_dssp STTHHHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHH---CT------------TSEEEE-EEECSHHHHHHHHH-
T ss_pred ccchHHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHH---CC------------CceEEE-eeeCcHHHHHHHHH-
Confidence 34568899999999999998864331 222222221 00 222222 35788887555443
Q ss_pred cCCCceEEEeCC-----------CCe---eeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 92 DGQAENIVIDLP-----------DWQ---VIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 92 ~~~~~~vvv~~~-----------dW~---iIPlEnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
..++.+++-.. +|. +--+.++..++...+..||+ .+.+.+|+..++. .|+|+|++-+-
T Consensus 290 -aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~---~GAd~V~vGs~ 363 (490)
T 4avf_A 290 -AGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMV---AGAYCVMMGSM 363 (490)
T ss_dssp -TTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHH---HTCSEEEECTT
T ss_pred -cCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHH---cCCCeeeecHH
Confidence 35889988322 232 22234455544444667998 7899999887764 59999998764
No 42
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=71.27 E-value=8.3 Score=38.83 Aligned_cols=115 Identities=13% Similarity=0.106 Sum_probs=70.4
Q ss_pred EeCchhHHHHHHHhCccEEEEcccch------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017962 18 WTESKQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 91 (363)
Q Consensus 18 w~~~K~~vt~AlEsG~~~~v~~~~~~------~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~ 91 (363)
+.+..+.+.+.++.|+|.+.+...+. +.++++.+. .| +..+.+ ..+.+.++...+..
T Consensus 229 ~~d~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~---~p------------~~~Vi~-g~v~t~e~a~~l~~- 291 (496)
T 4fxs_A 229 APGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAA---YP------------HLEIIG-GNVATAEGARALIE- 291 (496)
T ss_dssp SSCCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHH---CT------------TCCEEE-EEECSHHHHHHHHH-
T ss_pred ccchHHHHHHHHhccCceEEeccccccchHHHHHHHHHHHH---CC------------CceEEE-cccCcHHHHHHHHH-
Confidence 55678999999999999999875432 222222211 00 222222 45788887555443
Q ss_pred cCCCceEEEeCC-----------C---CeeeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 92 DGQAENIVIDLP-----------D---WQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 92 ~~~~~~vvv~~~-----------d---W~iIPlEnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
..++.+++... + ++.-.+.++..+++..+..||+ .+.+.+|+..++ ..|+|+|++-+-
T Consensus 292 -aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kal---a~GAd~V~iGs~ 365 (496)
T 4fxs_A 292 -AGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAI---AAGASCVMVGSM 365 (496)
T ss_dssp -HTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH---HTTCSEEEESTT
T ss_pred -hCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHH---HcCCCeEEecHH
Confidence 25788887411 1 2222334455544444567898 689999988775 569999998754
No 43
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=70.93 E-value=30 Score=31.24 Aligned_cols=114 Identities=13% Similarity=0.107 Sum_probs=67.0
Q ss_pred hhHHHHHHHhCccEEEEccc-chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCceEE
Q 017962 22 KQVMTAAVERGWNTFVFLSE-NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIV 99 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~-~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~~~~~~~vv 99 (363)
.++..++.+.|+.++-+... +...+++..++-++.. ..++. . |.. . -|+ +.++.+++. ...++.|+
T Consensus 39 ~~~A~a~~~~Ga~~i~~~~~~~i~~ir~~v~~Pvig~-~k~~~---~--~~~--~--~I~~~~~~i~~~~--~aGad~I~ 106 (229)
T 3q58_A 39 AAMAQAAASAGAVAVRIEGIENLRTVRPHLSVPIIGI-IKRDL---T--GSP--V--RITPYLQDVDALA--QAGADIIA 106 (229)
T ss_dssp HHHHHHHHHTTCSEEEEESHHHHHHHGGGCCSCEEEE-CBCCC---S--SCC--C--CBSCSHHHHHHHH--HHTCSEEE
T ss_pred HHHHHHHHHCCCcEEEECCHHHHHHHHHhcCCCEEEE-EeecC---C--CCc--e--EeCccHHHHHHHH--HcCCCEEE
Confidence 56777888899999988642 2233333333322211 01111 0 100 0 122 334444432 23688888
Q ss_pred EeCCC-CeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017962 100 IDLPD-WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 150 (363)
Q Consensus 100 v~~~d-W~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl 150 (363)
+.... -.--.++.++..+...+-.+++.+.+.+||+.+ ++.|+|.|..
T Consensus 107 l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a---~~~Gad~Ig~ 155 (229)
T 3q58_A 107 FDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISC---HQKGIEFIGT 155 (229)
T ss_dssp EECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHH---HHTTCSEEEC
T ss_pred ECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHH---HhCCCCEEEe
Confidence 86642 011357788888877677899999999999765 5789999963
No 44
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=70.77 E-value=15 Score=27.89 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=47.0
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 155 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~--~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~ 155 (363)
...+.++....... ...+.++++..-.. ..--.++..+.. ....++..... .+......+++.|+++++.+|-++
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~l~kP~~~ 112 (137)
T 3hdg_A 36 SAGDGEEGERLFGL-HAPDVIITDIRMPK-LGGLEMLDRIKAGGAKPYVIVISAF-SEMKYFIKAIELGVHLFLPKPIEP 112 (137)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEECSSCSS-SCHHHHHHHHHHTTCCCEEEECCCC-CCHHHHHHHHHHCCSEECCSSCCH
T ss_pred EECCHHHHHHHHhc-cCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCcEEEEecC-cChHHHHHHHhCCcceeEcCCCCH
Confidence 35565554333222 24677777432111 112233333332 23455555444 445567788999999999999999
Q ss_pred HHHHHHHH
Q 017962 156 KAVLALKE 163 (363)
Q Consensus 156 ~ei~~l~~ 163 (363)
+++.+.-+
T Consensus 113 ~~l~~~i~ 120 (137)
T 3hdg_A 113 GRLMETLE 120 (137)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88765433
No 45
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=70.47 E-value=4.4 Score=38.10 Aligned_cols=114 Identities=9% Similarity=0.117 Sum_probs=59.5
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCceEEE
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~~~~~~~vvv 100 (363)
...+..|.|+|+|++++++-..+...++... .+..|.....++.-+ +.+.+..++... .+++-+
T Consensus 115 ~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~-------------~~~~gl~~I~lvap~t~~eri~~i~~~~--~gfiY~ 179 (271)
T 3nav_A 115 DDFYQRCQKAGVDSVLIADVPTNESQPFVAA-------------AEKFGIQPIFIAPPTASDETLRAVAQLG--KGYTYL 179 (271)
T ss_dssp HHHHHHHHHHTCCEEEETTSCGGGCHHHHHH-------------HHHTTCEEEEEECTTCCHHHHHHHHHHC--CSCEEE
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHH-------------HHHcCCeEEEEECCCCCHHHHHHHHHHC--CCeEEE
Confidence 5678999999999999875322222222222 122233322222222 345555555543 233333
Q ss_pred ------eCCCCee-eehhhhhhcccCC-CceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 101 ------DLPDWQV-IPAENIVASFQGS-GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 101 ------~~~dW~i-IPlEnliA~~q~~-~~~l~--a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
.+..-++ -+++.+++.+... +..++ ..++++++|+ .+++.|+|||++-+.
T Consensus 180 vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~---~~~~~gADgvIVGSA 239 (271)
T 3nav_A 180 LSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVK---QAIEAGAAGAISGSA 239 (271)
T ss_dssp CCCC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHHHH---HHHHTTCSEEEESHH
T ss_pred EeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHHHH---HHHHcCCCEEEECHH
Confidence 1222111 2356677765433 22333 3467777775 356789999998663
No 46
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=70.40 E-value=7.4 Score=37.00 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=36.2
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 166 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~~ 166 (363)
.+|..+|.|.+||+.+ ++.|+|.|+|++=+++++++..+.+.
T Consensus 194 ~~I~VEV~tleea~eA---~~aGaD~I~LDn~~~e~l~~av~~l~ 235 (285)
T 1o4u_A 194 TKIEVEVENLEDALRA---VEAGADIVMLDNLSPEEVKDISRRIK 235 (285)
T ss_dssp SCEEEEESSHHHHHHH---HHTTCSEEEEESCCHHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 5799999999998876 56799999999999999988877763
No 47
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=70.20 E-value=26 Score=27.24 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=46.6
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 155 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q--~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~ 155 (363)
...+.++.-.... ....+.++++..-.. ..--+++..+. .....++...... +......+++.|+++++.+|-++
T Consensus 51 ~~~~~~~al~~l~-~~~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~l~Kp~~~ 127 (150)
T 4e7p_A 51 QAKNGQEAIQLLE-KESVDIAILDVEMPV-KTGLEVLEWIRSEKLETKVVVVTTFK-RAGYFERAVKAGVDAYVLKERSI 127 (150)
T ss_dssp EESSHHHHHHHHT-TSCCSEEEECSSCSS-SCHHHHHHHHHHTTCSCEEEEEESCC-CHHHHHHHHHTTCSEEEETTSCH
T ss_pred EECCHHHHHHHhh-ccCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCCeEEEEeCCC-CHHHHHHHHHCCCcEEEecCCCH
Confidence 4556554333222 234677777432111 22223333332 2345666665543 44556778999999999999999
Q ss_pred HHHHHH
Q 017962 156 KAVLAL 161 (363)
Q Consensus 156 ~ei~~l 161 (363)
+++.+.
T Consensus 128 ~~l~~~ 133 (150)
T 4e7p_A 128 ADLMQT 133 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 48
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=70.03 E-value=24 Score=27.02 Aligned_cols=82 Identities=10% Similarity=0.102 Sum_probs=47.1
Q ss_pred EecChhhhhhhccc-cCCCceEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017962 78 EVSTPQELQQLQPA-DGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 154 (363)
Q Consensus 78 ~v~~~e~~e~~~~~-~~~~~~vvv~~~dW~iIPlEnliA~~q--~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d 154 (363)
...+.++.-..... ....+.++++..-.. ..--.++..+. .....++..... .+......+++.|+++++.+|-+
T Consensus 32 ~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~ 109 (143)
T 3jte_A 32 TASSSTEGLRIFTENCNSIDVVITDMKMPK-LSGMDILREIKKITPHMAVIILTGH-GDLDNAILAMKEGAFEYLRKPVT 109 (143)
T ss_dssp EESSHHHHHHHHHHTTTTCCEEEEESCCSS-SCHHHHHHHHHHHCTTCEEEEEECT-TCHHHHHHHHHTTCSEEEESSCC
T ss_pred EeCCHHHHHHHHHhCCCCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCCeEEEEECC-CCHHHHHHHHHhCcceeEeCCCC
Confidence 35555543333322 335677888543111 11222333332 234566655544 34556678899999999999999
Q ss_pred HHHHHHH
Q 017962 155 VKAVLAL 161 (363)
Q Consensus 155 ~~ei~~l 161 (363)
++++...
T Consensus 110 ~~~l~~~ 116 (143)
T 3jte_A 110 AQDLSIA 116 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 49
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=69.94 E-value=3.8 Score=37.63 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=56.8
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCceEE-
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIV- 99 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~e~~e~~~~~~~~~~~vv- 99 (363)
...+..|.+.|+|++++++-..+...++.+.. ++.|..+..++.- ++.+.++.++......-|.+
T Consensus 112 ~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~-------------~~~gl~~i~l~~p~t~~~rl~~ia~~a~gfiy~vs 178 (262)
T 2ekc_A 112 EKFCRLSREKGIDGFIVPDLPPEEAEELKAVM-------------KKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVS 178 (262)
T ss_dssp HHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH-------------HHTTCEECCEECTTCCHHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH-------------HHcCCcEEEEeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 46778899999999999864333333332221 1122221112222 34455566655543322222
Q ss_pred ---EeCCCCeee---ehhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 100 ---IDLPDWQVI---PAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 100 ---v~~~dW~iI---PlEnliA~~q~~-~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
+.+.. +-. ++.++++.+.+. +..|+. .+++++.++. +..|+|||++-+
T Consensus 179 ~~g~TG~~-~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~----~~~gADgvIVGS 235 (262)
T 2ekc_A 179 VTGTTGAR-EKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHARE----IGSFADGVVVGS 235 (262)
T ss_dssp SCC----------CHHHHHHHHHHHHHCCSCEEEESSCCSHHHHHH----HHTTSSEEEECH
T ss_pred cCCccCCC-CCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH----HHcCCCEEEECH
Confidence 11111 112 255677766532 223433 3566777665 567899999854
No 50
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=69.85 E-value=5.6 Score=40.20 Aligned_cols=115 Identities=14% Similarity=0.101 Sum_probs=69.3
Q ss_pred EeCchhHHHHHHHhCccEEEEcccch------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017962 18 WTESKQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 91 (363)
Q Consensus 18 w~~~K~~vt~AlEsG~~~~v~~~~~~------~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~ 91 (363)
+.+..+.+.+.+|.|+|.+++...+. +.++++.+. .| +.++ ....|.+.++...+...
T Consensus 254 ~~d~~era~aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~~---~~------------~~~v-i~g~v~t~e~a~~~~~a 317 (511)
T 3usb_A 254 TADAMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAK---YP------------SLNI-IAGNVATAEATKALIEA 317 (511)
T ss_dssp STTHHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHH---CT------------TSEE-EEEEECSHHHHHHHHHH
T ss_pred ccchHHHHHHHHhhccceEEecccccchhhhhhHHHHHHHh---CC------------CceE-EeeeeccHHHHHHHHHh
Confidence 45568889999999999999876542 222222211 00 1122 22367788875554432
Q ss_pred cCCCceEEEeC-----------CCCe---eeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 92 DGQAENIVIDL-----------PDWQ---VIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 92 ~~~~~~vvv~~-----------~dW~---iIPlEnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
.++.+++.. .+|. +-.+.++.+.++..+..||| .+.+..|+..+ |..|+|+|++-+-
T Consensus 318 --Gad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~ka---la~GA~~V~vGs~ 390 (511)
T 3usb_A 318 --GANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKA---LAAGAHVVMLGSM 390 (511)
T ss_dssp --TCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHH---HHTTCSEEEESTT
T ss_pred --CCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHH---HHhCchhheecHH
Confidence 578887721 1332 22333444444444567887 78999998776 4579999998764
No 51
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=69.84 E-value=14 Score=33.06 Aligned_cols=108 Identities=17% Similarity=0.088 Sum_probs=61.0
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEEe
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 101 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~ 101 (363)
.+++.++++.|++.+=++..+..-.+.+..++.- ++ +..+++ ..+.+.++.+.+.. . .+++++.-
T Consensus 31 ~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~----------~~--~~~vga-gtvi~~d~~~~A~~-a-GAd~v~~p 95 (214)
T 1wbh_A 31 VPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKE----------VP--EAIVGA-GTVLNPQQLAEVTE-A-GAQFAISP 95 (214)
T ss_dssp HHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHH----------CT--TSEEEE-ESCCSHHHHHHHHH-H-TCSCEEES
T ss_pred HHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHH----------Cc--CCEEee-CEEEEHHHHHHHHH-c-CCCEEEcC
Confidence 5689999999999888875432111111111110 00 112222 23666776555433 2 57888774
Q ss_pred CCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 102 LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 102 ~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
..| .|+...-. ..+..++..+.|++|++. +++.|+|-|-+-|.
T Consensus 96 ~~d---~~v~~~~~---~~g~~~i~G~~t~~e~~~---A~~~Gad~v~~Fpa 138 (214)
T 1wbh_A 96 GLT---EPLLKAAT---EGTIPLIPGISTVSELML---GMDYGLKEFKFFPA 138 (214)
T ss_dssp SCC---HHHHHHHH---HSSSCEEEEESSHHHHHH---HHHTTCCEEEETTT
T ss_pred CCC---HHHHHHHH---HhCCCEEEecCCHHHHHH---HHHCCCCEEEEecC
Confidence 433 23322222 234455656999999865 46899999988874
No 52
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=69.49 E-value=6.1 Score=36.71 Aligned_cols=59 Identities=10% Similarity=0.282 Sum_probs=38.2
Q ss_pred CCCCCeeeec----CCceeEEEe-------------cCC-ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEe----cc
Q 017962 230 IASRPFRVNA----GPVHAYVLV-------------PGG-KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE----SR 287 (363)
Q Consensus 230 va~RPFRVNA----GaVHaYv~~-------------pgg-kT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE----~R 287 (363)
.-.|||-+-- +.++=+|.. |+| -|+||+.|+.||+|.+-...|+.. ..-+ .+
T Consensus 98 ~~~R~ySIaS~p~~~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~------l~~~~~~~~~ 171 (316)
T 3jqq_A 98 RCARLYSISSSNNMENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGYFN------LPNDAIQKNT 171 (316)
T ss_dssp CCCEEEEBCSCTTSSSEEEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEEECCCC------CCTTHHHHTC
T ss_pred ccceeeecccCCCCCeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEecCCceE------cCCcccCCCC
Confidence 3456666533 445555654 334 588999999999999866666531 1111 58
Q ss_pred ceeEEEE
Q 017962 288 PLILVEA 294 (363)
Q Consensus 288 PLllIeA 294 (363)
|++||=+
T Consensus 172 ~vvlIAg 178 (316)
T 3jqq_A 172 NFIFIAT 178 (316)
T ss_dssp CEEEEEE
T ss_pred cEEEEeC
Confidence 8998865
No 53
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=69.37 E-value=3 Score=39.56 Aligned_cols=69 Identities=14% Similarity=0.041 Sum_probs=32.6
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhccc-------c-cccceeeeeEEEEEEEEEcCCcce
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGR-------N-EVSNLLSLMKATVTRVDVAGMGDR 193 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~~~~-------~-~~~~~l~L~~atVt~V~~vGmGdR 193 (363)
.++...+.+.+|++.++ +.|+|+|.|++-++++++++++.+... . ..++.+ +..+|.++...|. |+
T Consensus 200 ~~i~vev~tlee~~~A~---~aGaD~I~ld~~~~~~l~~~v~~l~~~~~g~~~v~I~ASGGI--t~~ni~~~~~~Gv-D~ 273 (294)
T 3c2e_A 200 VKIEVECLSEDEATEAI---EAGADVIMLDNFKGDGLKMCAQSLKNKWNGKKHFLLECSGGL--NLDNLEEYLCDDI-DI 273 (294)
T ss_dssp SCEEEECSSSHHHHHHH---HHTCSEEECCC---------------------CCEEEEECCC--CC------CCCSC-SE
T ss_pred CeEEEecCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHhcccccCCCCeEEEEECCC--CHHHHHHHHHcCC-CE
Confidence 57999999999987665 579999999999999888776665321 0 122333 4456666666665 55
Q ss_pred EEE
Q 017962 194 VCV 196 (363)
Q Consensus 194 VCV 196 (363)
+.|
T Consensus 274 i~v 276 (294)
T 3c2e_A 274 YST 276 (294)
T ss_dssp EEC
T ss_pred EEE
Confidence 444
No 54
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=69.35 E-value=4.9 Score=38.69 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=34.6
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
..+|..+|.|.+|++.+ ++.|+|+|+|+.-+++++++..+.+
T Consensus 209 ~~~ieVEvdtlde~~eA---l~aGaD~I~LDn~~~~~l~~av~~i 250 (298)
T 3gnn_A 209 EVPVQIEVETLDQLRTA---LAHGARSVLLDNFTLDMMRDAVRVT 250 (298)
T ss_dssp -CCCEEEESSHHHHHHH---HHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35789999999987665 5579999999999999998777655
No 55
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=68.98 E-value=11 Score=35.09 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=35.8
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 166 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~~ 166 (363)
.++...+.+++|++.++ +.|+|.|.+++-++++++++.+.+.
T Consensus 183 ~~i~vev~tlee~~~A~---~aGaD~I~ld~~~~~~l~~~v~~l~ 224 (273)
T 2b7n_A 183 AKIEIECESFEEAKNAM---NAGADIVMCDNLSVLETKEIAAYRD 224 (273)
T ss_dssp CCEEEEESSHHHHHHHH---HHTCSEEEEETCCHHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHhh
Confidence 47999999999987665 5799999999999999988777663
No 56
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=68.42 E-value=14 Score=33.42 Aligned_cols=109 Identities=15% Similarity=0.071 Sum_probs=60.5
Q ss_pred chhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEE
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 100 (363)
-.+++.++++.|++.+=++..+..-.+.+..++.- ++ +..+++ ..+.++++.+.+.. . .+++++.
T Consensus 31 ~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~----------~~--~l~vga-Gtvl~~d~~~~A~~-a-GAd~v~~ 95 (224)
T 1vhc_A 31 ILPLADTLAKNGLSVAEITFRSEAAADAIRLLRAN----------RP--DFLIAA-GTVLTAEQVVLAKS-S-GADFVVT 95 (224)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHH----------CT--TCEEEE-ESCCSHHHHHHHHH-H-TCSEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHh----------Cc--CcEEee-CcEeeHHHHHHHHH-C-CCCEEEE
Confidence 35689999999999888875332211112112110 00 122222 12456666554333 2 5788876
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 101 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 101 ~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
-..| .| ++......+..++..+.|++|++. +++.|+|-|-+-|.
T Consensus 96 p~~d---~~---v~~~ar~~g~~~i~Gv~t~~e~~~---A~~~Gad~vk~Fpa 139 (224)
T 1vhc_A 96 PGLN---PK---IVKLCQDLNFPITPGVNNPMAIEI---ALEMGISAVKFFPA 139 (224)
T ss_dssp SSCC---HH---HHHHHHHTTCCEECEECSHHHHHH---HHHTTCCEEEETTT
T ss_pred CCCC---HH---HHHHHHHhCCCEEeccCCHHHHHH---HHHCCCCEEEEeeC
Confidence 4434 22 222222234445556899999865 56899999988884
No 57
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=68.33 E-value=9.5 Score=35.62 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=39.8
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
+.+.|.+.+.+ | ..++..++..+..++..+.+.++|+. +.+.|+|+|++..
T Consensus 96 g~d~V~~~~g~----p-~~~~~~l~~~gi~vi~~v~t~~~a~~---~~~~GaD~i~v~g 146 (328)
T 2gjl_A 96 GIRVVETAGND----P-GEHIAEFRRHGVKVIHKCTAVRHALK---AERLGVDAVSIDG 146 (328)
T ss_dssp TCCEEEEEESC----C-HHHHHHHHHTTCEEEEEESSHHHHHH---HHHTTCSEEEEEC
T ss_pred CCCEEEEcCCC----c-HHHHHHHHHcCCCEEeeCCCHHHHHH---HHHcCCCEEEEEC
Confidence 57888887664 4 46677776667789999999999875 5678999999954
No 58
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=67.95 E-value=7.1 Score=37.19 Aligned_cols=40 Identities=15% Similarity=0.016 Sum_probs=35.5
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 123 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 123 ~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
++..++.+.+|++.+ ++.|+|+|.|++-++++++++.+.+
T Consensus 210 kI~vev~tlee~~eA---~~aGaD~I~ld~~~~e~l~~~v~~~ 249 (296)
T 1qap_A 210 PVEVEVENLDELDDA---LKAGADIIMLDNFNTDQMREAVKRV 249 (296)
T ss_dssp CEEEEESSHHHHHHH---HHTTCSEEEESSCCHHHHHHHHHTT
T ss_pred cEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 899999999998776 5779999999999999998888766
No 59
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=67.92 E-value=14 Score=33.96 Aligned_cols=122 Identities=19% Similarity=0.104 Sum_probs=75.3
Q ss_pred CchhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEE
Q 017962 20 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 99 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vv 99 (363)
+-.++..+.++.|++.+=++-.+..-.+.+..+..--| +-.+++ ..|.+.++.+.+... .+++++
T Consensus 26 ~a~~~a~al~~gGi~~iEvt~~t~~a~~~I~~l~~~~p------------~~~IGA-GTVlt~~~a~~ai~A--GA~fiv 90 (217)
T 3lab_A 26 HAIPMAKALVAGGVHLLEVTLRTEAGLAAISAIKKAVP------------EAIVGA-GTVCTADDFQKAIDA--GAQFIV 90 (217)
T ss_dssp GHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCT------------TSEEEE-ECCCSHHHHHHHHHH--TCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCC------------CCeEee-ccccCHHHHHHHHHc--CCCEEE
Confidence 35778899999999998887433211122222211001 122333 367888886665543 577887
Q ss_pred EeCCCCeeeehhhhhhcccCCCc------eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH----HHHHHHHHhh
Q 017962 100 IDLPDWQVIPAENIVASFQGSGK------TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV----KAVLALKEYF 165 (363)
Q Consensus 100 v~~~dW~iIPlEnliA~~q~~~~------~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~----~ei~~l~~~~ 165 (363)
.-..+-+ ++...+..+. -++..+.|++|+..+ ++.|+|-|=+-|.+. +-+++|+..+
T Consensus 91 sP~~~~e------vi~~~~~~~v~~~~~~~~~PG~~TptE~~~A---~~~Gad~vK~FPa~~~gG~~~lkal~~p~ 157 (217)
T 3lab_A 91 SPGLTPE------LIEKAKQVKLDGQWQGVFLPGVATASEVMIA---AQAGITQLKCFPASAIGGAKLLKAWSGPF 157 (217)
T ss_dssp ESSCCHH------HHHHHHHHHHHCSCCCEEEEEECSHHHHHHH---HHTTCCEEEETTTTTTTHHHHHHHHHTTC
T ss_pred eCCCcHH------HHHHHHHcCCCccCCCeEeCCCCCHHHHHHH---HHcCCCEEEECccccccCHHHHHHHHhhh
Confidence 7555444 4443333344 799999999998765 889999999988763 4455554443
No 60
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=67.72 E-value=2.7 Score=43.15 Aligned_cols=134 Identities=18% Similarity=0.201 Sum_probs=85.3
Q ss_pred CchhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceE
Q 017962 20 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 98 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 98 (363)
+|++-+..|++.|+|.+.++. .+++.+.++.++ +.+.|+.+..+.+|.+++-++.+..-+...|-+
T Consensus 193 kD~~dl~~~~~~~vD~i~~sfVr~a~dv~~~r~~-------------l~~~~~~i~IiaKIE~~eav~nldeIl~~sDgI 259 (499)
T 3hqn_D 193 KDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKA-------------LGPKGRDIMIICKIENHQGVQNIDSIIEESDGI 259 (499)
T ss_dssp HHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHH-------------HCGGGTTSEEEEEECSHHHHHTHHHHHHHSSEE
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHH-------------HHhcCCCCeEEEEECCHHHHHhHHHHHHhCCcE
Confidence 468888999999999888874 223444444333 222345567788999999888776655557888
Q ss_pred EEeCCCCe-eeehhhh-------hhcccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 017962 99 VIDLPDWQ-VIPAENI-------VASFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED----- 154 (363)
Q Consensus 99 vv~~~dW~-iIPlEnl-------iA~~q~~~~~l~a-----------~v~~~~eA~~~~~~LE~G~dGVvl~~~d----- 154 (363)
++-..|-- =||+|.+ |.+....+.-++. ...+-.|+--...+.--|+|+|+|..+.
T Consensus 260 mVaRGDLgvEi~~e~vp~~Qk~iI~~c~~agkpVi~ATQmLeSMi~~p~PTRAEvsDVanaV~dG~DavMLSgETA~G~y 339 (499)
T 3hqn_D 260 MVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKY 339 (499)
T ss_dssp EEEHHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEESSSSGGGGTSSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSC
T ss_pred EEccccccCcCCHHHHHHHHHHHHHHHHHcCCCeEEeehhHHHhccCCCccHHHHHHHHHHHHcCCcEEEEeccccCCCC
Confidence 88544432 2456654 3332222223443 1245678888899999999999996543
Q ss_pred -HHHHHHHHHhhc
Q 017962 155 -VKAVLALKEYFD 166 (363)
Q Consensus 155 -~~ei~~l~~~~~ 166 (363)
.+.|+-+.+++.
T Consensus 340 PveaV~~m~~I~~ 352 (499)
T 3hqn_D 340 PNEVVQYMARICL 352 (499)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 356666666653
No 61
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=67.59 E-value=20 Score=26.89 Aligned_cols=66 Identities=9% Similarity=0.169 Sum_probs=39.9
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~----~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..+.++++..-. -..--.++..+.. ....++......+ ......+++.|+++++.+|-+++++.+.
T Consensus 55 ~~dlvi~d~~~~-~~~g~~~~~~l~~~~~~~~~pii~ls~~~~-~~~~~~~~~~g~~~~l~kP~~~~~l~~~ 124 (140)
T 1k68_A 55 RPDLILLXLNLP-KKDGREVLAEIKSDPTLKRIPVVVLSTSIN-EDDIFHSYDLHVNCYITKSANLSQLFQI 124 (140)
T ss_dssp CCSEEEECSSCS-SSCHHHHHHHHHHSTTGGGSCEEEEESCCC-HHHHHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCcEEEEecCCC-cccHHHHHHHHHcCcccccccEEEEecCCc-HHHHHHHHHhchhheecCCCCHHHHHHH
Confidence 467777743211 1222234444433 2345666555443 3455678899999999999999887654
No 62
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=67.34 E-value=23 Score=31.25 Aligned_cols=133 Identities=15% Similarity=0.019 Sum_probs=63.1
Q ss_pred EEEEe--CchhHHHHHHHhCccEEEEcccc---hhhhhhcccee--eeeeeeecCCccccCCCCeeEEEEEecChhhhhh
Q 017962 15 VWIWT--ESKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIA--LLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQ 87 (363)
Q Consensus 15 vWvw~--~~K~~vt~AlEsG~~~~v~~~~~---~~~~~~~~~i~--~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~ 87 (363)
+++-. .+.+.+..+++.|+|.+++.... .+..+++..++ .+-.+-.++|...- .|-.-. .-.+..++..
T Consensus 76 vi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~~~~g~~i~~~~d~~~~~v~~-~g~~~~---~~~~~~e~~~ 151 (241)
T 1qo2_A 76 IQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGGRVAF-KGWLAE---EEIDPVSLLK 151 (241)
T ss_dssp EEEESSCCSHHHHHHHHHTTCCEEEECHHHHHCTTHHHHHHTTTCEEEEEEEEETTEECC-TTCSSC---SCCCHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECchHhhChHHHHHHHHcCCcEEEEEEecCCEEEE-CCceec---CCCCHHHHHH
Confidence 56532 45677888999999999987632 23333332221 11111112221111 110000 0013333222
Q ss_pred hccccCCCceEEEeCCCC----eeeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHh--hcc-cCeEEEec
Q 017962 88 LQPADGQAENIVIDLPDW----QVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEAL--EQG-LGGIVLKV 152 (363)
Q Consensus 88 ~~~~~~~~~~vvv~~~dW----~iIPlEnliA~~q~~~~~l~a--~v~~~~eA~~~~~~L--E~G-~dGVvl~~ 152 (363)
.+.. ..++.++++..+- +-+.+|.+-.-.+..+..+++ .++++++++.+++.- -.| +|||++-+
T Consensus 152 ~~~~-~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgs 224 (241)
T 1qo2_A 152 RLKE-YGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGR 224 (241)
T ss_dssp HHHT-TTCCEEEEEETTHHHHTCCCCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECH
T ss_pred HHHh-CCCCEEEEEeecccccCCcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeH
Confidence 2222 2467788765321 112333332211222446776 478889988876540 119 99999864
No 63
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=66.55 E-value=21 Score=27.05 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=29.3
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++...... +......+++.|+++.+.+|-+++++.+.
T Consensus 81 ~~pii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~L~~~ 120 (129)
T 3h1g_A 81 EIPIIMITAEG-GKAEVITALKAGVNNYIVKPFTPQVLKEK 120 (129)
T ss_dssp TCCEEEEESCC-SHHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred CCeEEEEeCCC-ChHHHHHHHHcCccEEEeCCCCHHHHHHH
Confidence 44566655543 33456678999999999999999887644
No 64
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=66.30 E-value=17 Score=36.07 Aligned_cols=109 Identities=16% Similarity=0.117 Sum_probs=64.6
Q ss_pred hhHHHHHHHhCccEEEEcccc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCC
Q 017962 22 KQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 95 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~ 95 (363)
.+.+.+++|.|+|.|+++..+ .+.++.+.+- -+.++.. ..+.+.++...+.. ..+
T Consensus 146 ~e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~----------------~~i~Vi~-g~V~t~e~A~~a~~--aGA 206 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSK----------------MNIDVIV-GNVVTEEATKELIE--NGA 206 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTT----------------CCCEEEE-EEECSHHHHHHHHH--TTC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhc----------------CCCeEEE-eecCCHHHHHHHHH--cCC
Confidence 789999999999998874321 1222222111 0122111 25788887555443 368
Q ss_pred ceEEEeC--------C---CCeeee----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 96 ENIVIDL--------P---DWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 96 ~~vvv~~--------~---dW~iIP----lEnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
|.|++.. + +|. .| +.++...++..+..||| .+.+.+++..++ ..|+|||.+-+-
T Consensus 207 D~I~vG~g~Gs~~~tr~~~g~g-~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kal---alGAd~V~vGt~ 277 (400)
T 3ffs_A 207 DGIKVGIGPGSICTTRIVAGVG-VPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKAL---AVGASSVMIGSI 277 (400)
T ss_dssp SEEEECC---------CCSCBC-CCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHH---TTTCSEEEECGG
T ss_pred CEEEEeCCCCcCcccccccccc-hhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHH---HcCCCEEEEChH
Confidence 8888821 1 121 34 33444444444667888 688888876654 569999998754
No 65
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=66.02 E-value=26 Score=26.65 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=42.0
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~----~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..+.++++..-.. ..--.++..+.. ....++...... +......+++.|+++++.+|-+++++.+.
T Consensus 59 ~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~l~kP~~~~~L~~~ 128 (143)
T 2qvg_A 59 HPKLILLDINIPK-MNGIEFLKELRDDSSFTDIEVFVLTAAY-TSKDKLAFESLNIRGHLIKPLDYGEAIKL 128 (143)
T ss_dssp CCSEEEEETTCTT-SCHHHHHHHHTTSGGGTTCEEEEEESCC-CHHHHHHHTTTTCCEEEESSCCHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHcCccccCCcEEEEeCCC-CHHHHHHHHhcCCCeEEECCCCHHHHHHH
Confidence 4677777543211 222244444443 245666665543 45567788999999999999999987654
No 66
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=65.62 E-value=6.3 Score=40.98 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=85.8
Q ss_pred CchhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceE
Q 017962 20 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 98 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 98 (363)
.|++.+..|+|.|+|.+.++. .+++.+.++.++ +.+.|+.+..+.+|.+++-++.+..-+...|-+
T Consensus 243 kD~~dl~f~~~~~vD~ia~SfVr~a~Dv~~~r~~-------------L~~~g~~i~IIAKIE~~eav~nldeIl~~sDgI 309 (550)
T 3gr4_A 243 KDIQDLKFGVEQDVDMVFASFIRKASDVHEVRKV-------------LGEKGKNIKIISKIENHEGVRRFDEILEASDGI 309 (550)
T ss_dssp HHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHH-------------HTTTTTTSEEEEEECSHHHHHTHHHHHHHSSEE
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHH-------------HHhcCCCceEEEEeCCHHHHHHHHHHHHhCCEE
Confidence 468888999999999888774 223444444333 333455677888999999888776655557888
Q ss_pred EEeCCCCe-eeehhhh-------hhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 017962 99 VIDLPDWQ-VIPAENI-------VASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED----- 154 (363)
Q Consensus 99 vv~~~dW~-iIPlEnl-------iA~~q~~~~~l~a~-----------v~~~~eA~~~~~~LE~G~dGVvl~~~d----- 154 (363)
++-..|-- =||+|.+ |.+....+.-++.. ..+-.|+--.+.+.--|+|+|+|..+.
T Consensus 310 mVaRGDLgvei~~e~vp~~Qk~iI~~c~~agkpVi~ATQMLeSMi~~p~PTRAEvsDVanAvldG~DavMLSgETA~G~y 389 (550)
T 3gr4_A 310 MVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDY 389 (550)
T ss_dssp EEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSC
T ss_pred EEccchhcccCCHHHHHHHHHHHHHHHHHhCCCEEEEehhhHHhhcCCCccHHHHHHHHHHHHcCCcEEEEecCccCCCC
Confidence 88543432 1355553 33322222234421 235678888899999999999996543
Q ss_pred -HHHHHHHHHhhc
Q 017962 155 -VKAVLALKEYFD 166 (363)
Q Consensus 155 -~~ei~~l~~~~~ 166 (363)
.+.|+-+.+++.
T Consensus 390 PveaV~~M~~I~~ 402 (550)
T 3gr4_A 390 PLEAVRMQHLIAR 402 (550)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 356666666653
No 67
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=65.38 E-value=8 Score=39.94 Aligned_cols=138 Identities=15% Similarity=0.166 Sum_probs=87.5
Q ss_pred hHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEEe
Q 017962 23 QVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 101 (363)
Q Consensus 23 ~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~ 101 (363)
+++.-|+|.|+|.|-+.- .+++.+.++.++ .-+.|......+..+..+.+|.+++.++.+..-....|-++|.
T Consensus 220 D~l~fa~~~~vD~ialSFVr~~~Dv~~~r~~------l~~~g~~~~~~~~~i~IiaKIE~~~av~NldeIi~~sDgIMVA 293 (526)
T 4drs_A 220 DIVDFALKYNLDFIALSFVQNGADVQLCRQI------ISENTQYSNGIPSSIKIISKIENLEGVINFDSICSESDGIMVA 293 (526)
T ss_dssp HHHHTTTTTTCSEEEETTCCSHHHHHHHHHH------HHTCCTTTTTCCCCCEEEEEECSHHHHHTHHHHHHHSSEEEEE
T ss_pred HHHHHHHHhccCeeeecccCchhhHHHHHHH------HHhhCcccccccccceeeeehhccHHHHHHHHHHhhccEEEEE
Confidence 467889999999766553 224444444443 1122221122234566778999999999888877778999997
Q ss_pred CCCCee-eehhhh-------hhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecC-----CH-H
Q 017962 102 LPDWQV-IPAENI-------VASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVE-----DV-K 156 (363)
Q Consensus 102 ~~dW~i-IPlEnl-------iA~~q~~~~~l~a~-----------v~~~~eA~~~~~~LE~G~dGVvl~~~-----d~-~ 156 (363)
-.|--+ ||+|.+ |......+.-+|.. ..+-.|+--...+.--|+|+|+|..+ -| +
T Consensus 294 RGDLgvEip~e~vp~~QK~II~~c~~~gKPVI~ATQmLeSMi~np~PTRAEvsDVAnAV~DGaDavMLSgETA~G~yPve 373 (526)
T 4drs_A 294 RGDLGMEIPPEKIFVAQKCMISKCNVAGKPVVTATQMLESMIKSNRPTRAEMTDVANAVLDGSDCVMLSGETANGAFPFD 373 (526)
T ss_dssp CTTHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESCTTGGGGSSSSCCHHHHHHHHHHHHHTCSEEEESHHHHSCSCHHH
T ss_pred CCcccccCCHHHHHHHHHHHHHHHHHcCCeEEEhhhhhHHHhhCCCCCCchHHHHHHHHHhCCceEEEcchhhcccCHHH
Confidence 666443 555554 44433333334432 34557888899999999999999843 23 5
Q ss_pred HHHHHHHhhc
Q 017962 157 AVLALKEYFD 166 (363)
Q Consensus 157 ei~~l~~~~~ 166 (363)
.|+-+.+++.
T Consensus 374 aV~~m~~I~~ 383 (526)
T 4drs_A 374 AVNVMSRVCA 383 (526)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5655666654
No 68
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=65.31 E-value=9.9 Score=32.95 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=58.5
Q ss_pred eeEEEEEEEEEcCCc-ceEEEeecC-----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee----cCCceeEE
Q 017962 177 LMKATVTRVDVAGMG-DRVCVDLCS-----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN----AGPVHAYV 246 (363)
Q Consensus 177 L~~atVt~V~~vGmG-dRVCVDtcs-----ll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVN----AGaVHaYv 246 (363)
..+++|++++.+.-. -|+.+.... -+.||+=+.+ +-.....++..+|||=+- .+.+.=++
T Consensus 3 ~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l----------~~~~~~~~~~~~R~ySi~s~~~~~~~~i~v 72 (243)
T 4eh1_A 3 GRTFVVREKQVESAYVTSFVLVPADGGAVLDYQPGQYIGI----------EVTPEGSDYREIRQYSLSHASNGREYRISV 72 (243)
T ss_dssp CEEEEEEEEEECSSSEEEEEEEESSCSCCCCCCTTCEEEE----------EECCSSCSSCEEEEEEBCSCCCSSCEEEEE
T ss_pred cEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCcCCCCEEEE----------EEecCCCccccceeeEeccCCCCCeEEEEE
Confidence 357888888887532 234444322 2445553332 111111122234555552 24445555
Q ss_pred Eec-------CCceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 247 LVP-------GGKTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 247 ~~p-------ggkT~YLS-EL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
..- |.-|+||. .|+.||+|.+-...|+...- -..+|++||=+
T Consensus 73 k~~~~~~~~~G~~S~~l~~~l~~G~~v~v~gP~G~~~~~------~~~~~~vliag 122 (243)
T 4eh1_A 73 KREGVGSDNPGLVSHYLHNNVKVGDSVKLYAPAGDFFYV------ERERPVVLISA 122 (243)
T ss_dssp ECTTTTSSSCCHHHHHHHHHCCTTCEEEEEEEECSCCCC------CCSSCEEEEEE
T ss_pred EEeecCCCCCCeehhHHHhcCCCCCEEEEEccCcccCcC------CCCCCEEEEEc
Confidence 543 44599996 69999999998888875421 24688888865
No 69
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=64.71 E-value=16 Score=33.67 Aligned_cols=108 Identities=16% Similarity=0.098 Sum_probs=66.8
Q ss_pred chhHHHHHHHhCccEEEEcccch---hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCce
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQ---QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 97 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~---~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 97 (363)
-.++..++++.|+..+=++-.+. +..+++.+- + | +-.++ ...|.+.++.+.+... .+++
T Consensus 48 a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~--~-~------------~~~iG-aGTVlt~~~a~~Ai~A--GA~f 109 (232)
T 4e38_A 48 IIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQA--Q-P------------EMLIG-AGTILNGEQALAAKEA--GATF 109 (232)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHH--C-T------------TCEEE-EECCCSHHHHHHHHHH--TCSE
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHh--C-C------------CCEEe-ECCcCCHHHHHHHHHc--CCCE
Confidence 46677888888888877764322 222222211 0 0 11222 2346788886665543 5678
Q ss_pred EEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017962 98 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 155 (363)
Q Consensus 98 vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~ 155 (363)
++.-..| +.++...+..+..++..+.|++|+..| ++.|+|-|=+-|-+.
T Consensus 110 IvsP~~~------~~vi~~~~~~gi~~ipGv~TptEi~~A---~~~Gad~vK~FPa~~ 158 (232)
T 4e38_A 110 VVSPGFN------PNTVRACQEIGIDIVPGVNNPSTVEAA---LEMGLTTLKFFPAEA 158 (232)
T ss_dssp EECSSCC------HHHHHHHHHHTCEEECEECSHHHHHHH---HHTTCCEEEECSTTT
T ss_pred EEeCCCC------HHHHHHHHHcCCCEEcCCCCHHHHHHH---HHcCCCEEEECcCcc
Confidence 7764433 334444444566788999999998776 789999999988543
No 70
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=64.64 E-value=21 Score=27.09 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=29.5
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++...... +......+++.|+++++.+|-+++++.+.
T Consensus 81 ~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 120 (136)
T 3hdv_A 81 ALSIIVVSGDT-DVEEAVDVMHLGVVDFLLKPVDLGKLLEL 120 (136)
T ss_dssp TCEEEEEESSC-CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHhCCcceEEeCCCCHHHHHHH
Confidence 44666555543 34566788999999999999999877543
No 71
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=64.59 E-value=12 Score=32.91 Aligned_cols=113 Identities=7% Similarity=0.031 Sum_probs=60.1
Q ss_pred eCchhHHHHHHHhCccEEEEcccchhhh-----hhccceeee--eeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017962 19 TESKQVMTAAVERGWNTFVFLSENQQLA-----IDWSTIALL--DPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 91 (363)
Q Consensus 19 ~~~K~~vt~AlEsG~~~~v~~~~~~~~~-----~~~~~i~~i--~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~ 91 (363)
.+-.++...+.+.|++.+-+...+.... ..+..+... -|+.+.+ -|.++++.+.+...
T Consensus 32 ~d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~~~i~~i~~~~~ipv~v~g---------------gI~~~~~~~~~l~~ 96 (244)
T 1vzw_A 32 GSPLEAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEVAQAMDIKVELSG---------------GIRDDDTLAAALAT 96 (244)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEEHHHHHTSCCCHHHHHHHHHHCSSEEEEES---------------SCCSHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCCEEEEecCchhhcCCChHHHHHHHHHhcCCcEEEEC---------------CcCCHHHHHHHHHc
Confidence 4446778888999999887654222111 111111110 1222222 26788887666542
Q ss_pred cCCCceEEEeCCCCeeee--hhhhhhcccCCCceEEEEcC----------------CHHHHHHHHHHhhcccCeEEEecC
Q 017962 92 DGQAENIVIDLPDWQVIP--AENIVASFQGSGKTVFAISK----------------TPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 92 ~~~~~~vvv~~~dW~iIP--lEnliA~~q~~~~~l~a~v~----------------~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
.++.|++.....+- | +..++..+. .+++..++ ++. +.+..+++.|+|.|++.+-
T Consensus 97 --Gad~V~lg~~~l~~-p~~~~~~~~~~g---~~~~~~l~~~~g~v~~~g~~~~~~~~~--e~~~~~~~~G~~~i~~~~~ 168 (244)
T 1vzw_A 97 --GCTRVNLGTAALET-PEWVAKVIAEHG---DKIAVGLDVRGTTLRGRGWTRDGGDLY--ETLDRLNKEGCARYVVTDI 168 (244)
T ss_dssp --TCSEEEECHHHHHC-HHHHHHHHHHHG---GGEEEEEEEETTEECCSSSCCCCCBHH--HHHHHHHHTTCCCEEEEEC
T ss_pred --CCCEEEECchHhhC-HHHHHHHHHHcC---CcEEEEEEccCCEEEEcCcccCCCCHH--HHHHHHHhCCCCEEEEecc
Confidence 48888884432111 2 556666542 23322222 333 3445567789999999874
Q ss_pred C
Q 017962 154 D 154 (363)
Q Consensus 154 d 154 (363)
+
T Consensus 169 ~ 169 (244)
T 1vzw_A 169 A 169 (244)
T ss_dssp -
T ss_pred C
Confidence 4
No 72
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=64.47 E-value=7.8 Score=36.14 Aligned_cols=114 Identities=9% Similarity=-0.015 Sum_probs=58.3
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEE-ecChhhhhhhccccCCCceEE-
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIE-VSTPQELQQLQPADGQAENIV- 99 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~-v~~~e~~e~~~~~~~~~~~vv- 99 (363)
...+..+.+.|+|++++++-..+...+|.... +..|.....++. .++.+.++.++.......|++
T Consensus 109 ~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~-------------~~~gl~~i~liap~s~~eri~~ia~~~~gfiy~vs 175 (271)
T 1ujp_A 109 ERFFGLFKQAGATGVILPDLPPDEDPGLVRLA-------------QEIGLETVFLLAPTSTDARIATVVRHATGFVYAVS 175 (271)
T ss_dssp HHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH-------------HHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEEC
T ss_pred HHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH-------------HHcCCceEEEeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 46678899999999998763222222222110 111111111111 234555566665544444443
Q ss_pred ---EeCCCCe-eeehhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 100 ---IDLPDWQ-VIPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 100 ---v~~~dW~-iIPlEnliA~~q~~-~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
+.+.+-. --|++.+++++... +..|++ .++++++|+.+ .|+|||++-+-
T Consensus 176 ~~G~TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~-----~~ADgVIVGSA 231 (271)
T 1ujp_A 176 VTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA-----AVADGVVVGSA 231 (271)
T ss_dssp C------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH-----TTSSEEEECHH
T ss_pred cCcccCCCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh-----cCCCEEEEChH
Confidence 2222211 23566677666543 334544 46788988873 89999998754
No 73
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=63.77 E-value=15 Score=34.30 Aligned_cols=113 Identities=16% Similarity=0.191 Sum_probs=66.5
Q ss_pred hhHHHHHHHhCccEEEEcccch---hhhhhccceee-e-eeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCc
Q 017962 22 KQVMTAAVERGWNTFVFLSENQ---QLAIDWSTIAL-L-DPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 96 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~---~~~~~~~~i~~-i-~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~ 96 (363)
-++.....+.|++++=+-.++. +....+..+.. + -|+..+| -+.++.+++++.. ..++
T Consensus 75 ~~~A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~v~lPvl~kd---------------fiid~~qv~~A~~--~GAD 137 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLRKD---------------FVVQPYQIHEARA--HGAD 137 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHHCSSCEEEES---------------CCCSHHHHHHHHH--TTCS
T ss_pred HHHHHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHhCCCCEEECc---------------cccCHHHHHHHHH--cCCC
Confidence 4566666678999876643321 11122222211 1 1433332 1456666555432 3678
Q ss_pred eEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017962 97 NIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 154 (363)
Q Consensus 97 ~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d 154 (363)
.|++...+-..--++.++..+..-+-.++..++|.+|++.++ +.|+|-|-+.+.|
T Consensus 138 ~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~---~~Gad~IGv~~r~ 192 (272)
T 3qja_A 138 MLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRAL---KAGAKVIGVNARD 192 (272)
T ss_dssp EEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH---HHTCSEEEEESBC
T ss_pred EEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH---HCCCCEEEECCCc
Confidence 888744433222356667666555667899999999988766 5699999988654
No 74
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=63.43 E-value=7.7 Score=39.77 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=30.4
Q ss_pred eeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCe
Q 017962 236 RVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQ 274 (363)
Q Consensus 236 RVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~ 274 (363)
.+||.+.=+|+.. |...+.+|-.++.-.|+++..+-++
T Consensus 392 ~~~a~aIv~~T~s-G~ta~~isr~RP~~pI~a~t~~~~~ 429 (500)
T 1a3w_A 392 EQKAKAIIVLSTS-GTTPRLVSKYRPNCPIILVTRCPRA 429 (500)
T ss_dssp HHTCSCEEEECSS-SHHHHHHHHTCCSSCEEEEESCTTH
T ss_pred hcCCCEEEEECCC-chHHHHHHhhCCCCCEEEEcCCHHH
Confidence 3677777777775 7777889999999999999887544
No 75
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=62.91 E-value=26 Score=29.73 Aligned_cols=77 Identities=26% Similarity=0.288 Sum_probs=42.9
Q ss_pred EecChhhhhhhccccCCCceEEEeC------------CCCeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhc
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDL------------PDWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQ 143 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~------------~dW~iIPlEnliA~~q~~~~~l~a~--v~~~~eA~~~~~~LE~ 143 (363)
.+.++++...+. ...++++++.. .+|+.| ..+...+ +..+++. ++ ++.++. +++.
T Consensus 114 ~~~t~~e~~~~~--~~g~d~i~~~~~~~~~~~~~~~~~~~~~l--~~l~~~~---~~pvia~GGI~-~~nv~~---~~~~ 182 (215)
T 1xi3_A 114 SVYSLEEALEAE--KKGADYLGAGSVFPTKTKEDARVIGLEGL--RKIVESV---KIPVVAIGGIN-KDNARE---VLKT 182 (215)
T ss_dssp EESSHHHHHHHH--HHTCSEEEEECSSCC----CCCCCHHHHH--HHHHHHC---SSCEEEESSCC-TTTHHH---HHTT
T ss_pred ecCCHHHHHHHH--hcCCCEEEEcCCccCCCCCCCCCcCHHHH--HHHHHhC---CCCEEEECCcC-HHHHHH---HHHc
Confidence 567877755432 23589998743 133322 2232222 3345543 34 566554 4568
Q ss_pred ccCeEEEec-----CCH-HHHHHHHHhh
Q 017962 144 GLGGIVLKV-----EDV-KAVLALKEYF 165 (363)
Q Consensus 144 G~dGVvl~~-----~d~-~ei~~l~~~~ 165 (363)
|+|||.+-+ +|+ ..++++++.+
T Consensus 183 Ga~gv~vgs~i~~~~d~~~~~~~~~~~~ 210 (215)
T 1xi3_A 183 GVDGIAVISAVMGAEDVRKATEELRKIV 210 (215)
T ss_dssp TCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred CCCEEEEhHHHhCCCCHHHHHHHHHHHH
Confidence 999998764 566 3666665554
No 76
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=62.66 E-value=17 Score=33.30 Aligned_cols=103 Identities=11% Similarity=0.079 Sum_probs=61.1
Q ss_pred hhHHHHHHHhCccEEEEcccch---------------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhh
Q 017962 22 KQVMTAAVERGWNTFVFLSENQ---------------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQ 86 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~---------------~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e 86 (363)
.+.+..|++.|++.|.+...+. ++++++..+. ...| +.+-|.+.-++
T Consensus 46 ~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~-------------~~~~----~~liInd~~~l- 107 (243)
T 3o63_A 46 AQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAA-------------HRYG----ALFAVNDRADI- 107 (243)
T ss_dssp HHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHH-------------HHTT----CEEEEESCHHH-
T ss_pred HHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHH-------------HhhC----CEEEEeCHHHH-
Confidence 5788999999999999976431 1122222221 1112 22345555443
Q ss_pred hhccccCCCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 87 QLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 87 ~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
+... .++-|-+...|. |...+-.. .+....|-..+.|.+|++.+ .+.|+|-|.+.|
T Consensus 108 --A~~~-gAdGVHLg~~dl---~~~~~r~~-~~~~~~iG~S~ht~~Ea~~A---~~~GaDyI~vgp 163 (243)
T 3o63_A 108 --ARAA-GADVLHLGQRDL---PVNVARQI-LAPDTLIGRSTHDPDQVAAA---AAGDADYFCVGP 163 (243)
T ss_dssp --HHHH-TCSEEEECTTSS---CHHHHHHH-SCTTCEEEEEECSHHHHHHH---HHSSCSEEEECC
T ss_pred --HHHh-CCCEEEecCCcC---CHHHHHHh-hCCCCEEEEeCCCHHHHHHH---hhCCCCEEEEcC
Confidence 2223 456777755554 44443332 23455677788999997754 568999999954
No 77
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=62.06 E-value=25 Score=30.75 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=45.6
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 156 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~-~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ 156 (363)
...+.++.-.... ....|.+|++..-.. ..--.++..+.. ....++..... .+......+++.|++|.+.+|-+++
T Consensus 66 ~~~~~~~al~~~~-~~~~DlvllD~~lp~-~~G~~l~~~lr~~~~~~iI~lt~~-~~~~~~~~a~~~Ga~~yl~Kp~~~~ 142 (249)
T 3q9s_A 66 HADSAMNGLIKAR-EDHPDLILLDLGLPD-FDGGDVVQRLRKNSALPIIVLTAR-DTVEEKVRLLGLGADDYLIKPFHPD 142 (249)
T ss_dssp EESSHHHHHHHHH-HSCCSEEEEECCSCH-HHHHHHHHHHHTTCCCCEEEEESC-CSHHHHHHHHHHTCSEEEESSCCHH
T ss_pred EeCCHHHHHHHHh-cCCCCEEEEcCCCCC-CCHHHHHHHHHcCCCCCEEEEECC-CCHHHHHHHHHCCCcEEEECCCCHH
Confidence 4556554333222 234678888433111 111123333322 23455554443 3455677889999999999999998
Q ss_pred HHHHH
Q 017962 157 AVLAL 161 (363)
Q Consensus 157 ei~~l 161 (363)
++.+.
T Consensus 143 ~L~~~ 147 (249)
T 3q9s_A 143 ELLAR 147 (249)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87544
No 78
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=61.98 E-value=9 Score=33.91 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=26.8
Q ss_pred CCCCCCeeeecCCceeEEEecCCceeeeeeccCCCeEEE------EcCCCCeeEEeeeeEE
Q 017962 229 YIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIV------VDQKGRQRTAVVGRVK 283 (363)
Q Consensus 229 Yva~RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLv------Vd~~G~~R~~~VGRvK 283 (363)
|++.|.+||+.-|-= =.+.|+.|++|+. |.+-|-.++-.|-.+|
T Consensus 25 ~t~GRkMrv~vsP~v-----------d~~~L~~Gq~V~LNEal~VVea~~~~~~Gev~tv~ 74 (153)
T 2wfw_A 25 FTSGRKMRLTCSPNI-----------DTDTLALGQTVRLNEALTIVEAGTYEQVGEISTLR 74 (153)
T ss_dssp EETTEEEEECBCTTC-----------CGGGCCTTCEEEECTTCCEEEECCCCCSEEEEEEE
T ss_pred EECCcEEEEEeCCCC-----------CHHHCCCCCEEEECCceEEEEccCCCCccCEEEEE
Confidence 677888888766531 2467888888874 4444444444444443
No 79
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=61.98 E-value=13 Score=35.31 Aligned_cols=42 Identities=14% Similarity=0.011 Sum_probs=35.8
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 166 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~~ 166 (363)
.++...+.+++|++.++ +.|+|+|.|++-++++++++++.+.
T Consensus 198 ~~i~vev~tlee~~~A~---~aGaD~I~ld~~~~~~l~~~v~~l~ 239 (299)
T 2jbm_A 198 LKVEVECSSLQEAVQAA---EAGADLVLLDNFKPEELHPTATVLK 239 (299)
T ss_dssp SCEEEEESSHHHHHHHH---HTTCSEEEEESCCHHHHHHHHHHHH
T ss_pred CeEEEecCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHhh
Confidence 57999999999887655 6799999999999999988777663
No 80
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=61.77 E-value=24 Score=26.55 Aligned_cols=66 Identities=14% Similarity=0.226 Sum_probs=38.2
Q ss_pred CCceEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q--~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..+.++++..-.. ..--.++..+. .....++...... +......+++.|+++++.+|-+++++.+.
T Consensus 46 ~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 113 (134)
T 3f6c_A 46 KPDIVIIDVDIPG-VNGIQVLETLRKRQYSGIIIIVSAKN-DHFYGKHCADAGANGFVSKKEGMNNIIAA 113 (134)
T ss_dssp CCSEEEEETTCSS-SCHHHHHHHHHHTTCCSEEEEEECC----CTHHHHHHTTCSEEEEGGGCTHHHHHH
T ss_pred CCCEEEEecCCCC-CChHHHHHHHHhcCCCCeEEEEeCCC-ChHHHHHHHHhCCCEEEeCCCCHHHHHHH
Confidence 4677777543111 12222333332 2244566555443 44556788899999999999998877654
No 81
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=61.46 E-value=3.6 Score=34.47 Aligned_cols=31 Identities=39% Similarity=0.634 Sum_probs=26.2
Q ss_pred CceeeeeecCCCCEEEEEecCCCcccceeee
Q 017962 327 EKAIPVTSLKVGDEVLLRVQGAARHTGIEIQ 357 (363)
Q Consensus 327 g~~vsVt~Lk~GD~VL~~~~~~gRHfG~~I~ 357 (363)
++.++..+|+|||-|+........|+||-+.
T Consensus 60 g~~v~~~~l~pGDLvff~~~~~~~HVgIy~G 90 (136)
T 2jyx_A 60 GKSVSRSNLRTGDLVLFRAGSTGRHVGIYIG 90 (136)
T ss_dssp SEECCTTTCCTTEEEEEECSSSSEEEEEEEE
T ss_pred CeEcchHhCCCCCEEEECCCCCCCEEEEEEc
Confidence 5778888999999999887666789999874
No 82
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=60.98 E-value=28 Score=29.99 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=42.0
Q ss_pred EecChhhhhhhccccCCCceEEEe--C-----------CCCeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhh
Q 017962 78 EVSTPQELQQLQPADGQAENIVID--L-----------PDWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALE 142 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~--~-----------~dW~iIPlEnliA~~q~~~~~l~a~--v~~~~eA~~~~~~LE 142 (363)
.+.++++...+. ...++++++. + .+|..+ ..+...+ . +..+++. ++ ++.++. +++
T Consensus 122 s~~t~~e~~~a~--~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l--~~~~~~~-~-~~pvia~GGI~-~~nv~~---~~~ 191 (227)
T 2tps_A 122 SAHTMSEVKQAE--EDGADYVGLGPIYPTETKKDTRAVQGVSLI--EAVRRQG-I-SIPIVGIGGIT-IDNAAP---VIQ 191 (227)
T ss_dssp EECSHHHHHHHH--HHTCSEEEECCSSCCCSSSSCCCCCTTHHH--HHHHHTT-C-CCCEEEESSCC-TTTSHH---HHH
T ss_pred ecCCHHHHHHHH--hCCCCEEEECCCcCCCCCCCCCCccCHHHH--HHHHHhC-C-CCCEEEEcCCC-HHHHHH---HHH
Confidence 456777644433 2357888861 1 134332 2222222 1 1345543 33 555554 456
Q ss_pred cccCeEEEec-----CCH-HHHHHHHHhh
Q 017962 143 QGLGGIVLKV-----EDV-KAVLALKEYF 165 (363)
Q Consensus 143 ~G~dGVvl~~-----~d~-~ei~~l~~~~ 165 (363)
.|+|||.+-+ +|+ +.++++.+.+
T Consensus 192 ~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~ 220 (227)
T 2tps_A 192 AGADGVSMISAISQAEDPESAARKFREEI 220 (227)
T ss_dssp TTCSEEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred cCCCEEEEhHHhhcCCCHHHHHHHHHHHH
Confidence 7999998865 577 6666666554
No 83
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=60.92 E-value=15 Score=32.30 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=21.1
Q ss_pred EEEEEe--CchhHHHHHHHhCccEEEEccc
Q 017962 14 RVWIWT--ESKQVMTAAVERGWNTFVFLSE 41 (363)
Q Consensus 14 ~vWvw~--~~K~~vt~AlEsG~~~~v~~~~ 41 (363)
.+|+-- .+.+.+..+++.|+|.+++..+
T Consensus 77 pv~v~ggI~~~~~~~~~l~~Gad~V~lg~~ 106 (244)
T 1vzw_A 77 KVELSGGIRDDDTLAAALATGCTRVNLGTA 106 (244)
T ss_dssp EEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred cEEEECCcCCHHHHHHHHHcCCCEEEECch
Confidence 466632 3567799999999999998764
No 84
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=60.88 E-value=17 Score=30.60 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=27.3
Q ss_pred ceeeeeeccCCCeEEEEcC-CCCeeEEeeeeEEE
Q 017962 252 KTCYLSELKSGKEVIVVDQ-KGRQRTAVVGRVKI 284 (363)
Q Consensus 252 kT~YLSEL~sG~eVLvVd~-~G~~R~~~VGRvKI 284 (363)
+..+-++|+.||.|++.|. +|..|...|=++..
T Consensus 85 ~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~ 118 (145)
T 1at0_A 85 TFVFADRIEEKNQVLVRDVETGELRPQRVVKVGS 118 (145)
T ss_dssp EEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEE
T ss_pred EEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEE
Confidence 5678999999999999997 67788887777654
No 85
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=60.50 E-value=10 Score=32.99 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=39.0
Q ss_pred CeEEEE-cCCCCeeEEeeeeEEEe--ccceeEEEEEecCCCCeEE------EEEeEecceEEEecCCCCCCCCCceeeee
Q 017962 263 KEVIVV-DQKGRQRTAVVGRVKIE--SRPLILVEAKTNSGDQTLY------GIILQNAETVALVSPCKGTGEQEKAIPVT 333 (363)
Q Consensus 263 ~eVLvV-d~~G~~R~~~VGRvKIE--~RPLllIeAe~~~~~g~~~------sviLQnAETIrLv~p~~~~~~~g~~vsVt 333 (363)
+.|+.. +.+|+.+...|=++--- .+||+.|+.+ +|+.+ .++..+... -..+...
T Consensus 57 ~~v~s~~~~~gk~~~~~v~~v~~~~~~~~~~~I~t~----~G~~i~~T~~Hp~~v~~~g~-------------~~w~~A~ 119 (186)
T 2jmz_A 57 IYIKSFNKLSLIIEDKRILRVWRKKYSGKLIKITTK----NRREITLTHDHPVYISKTGE-------------VLEINAE 119 (186)
T ss_dssp CEEECCBTTTTBCCEEECCEEEEECCCEEEECCCCT----TSCCCCBCTTCEEEEEETTE-------------EEEEEGG
T ss_pred cEEEEEECCCCCEEEEEeEEEEEcCCCCcEEEEEEC----CCCEEEEeCCCEEEEeCCCe-------------EEEEEhh
Confidence 355555 46788777776665542 3566666653 35432 333333211 1246778
Q ss_pred ecCCCCEEEEEe
Q 017962 334 SLKVGDEVLLRV 345 (363)
Q Consensus 334 ~Lk~GD~VL~~~ 345 (363)
+||+||.|++.-
T Consensus 120 eLk~GD~v~~~~ 131 (186)
T 2jmz_A 120 MVKVGDYIYIPK 131 (186)
T ss_dssp GCCTTSEEEEEC
T ss_pred cCCCCCEEEecc
Confidence 999999999863
No 86
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=60.39 E-value=42 Score=26.11 Aligned_cols=82 Identities=10% Similarity=0.115 Sum_probs=45.7
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcc-cCeEEEecCC
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQG-LGGIVLKVED 154 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q--~~~~~l~a~v~~~~eA~~~~~~LE~G-~dGVvl~~~d 154 (363)
...+.++.-.........+.++++..-.. ..--.++..+. .....++... +..+......+++.| +++++.+|-+
T Consensus 32 ~~~~~~~a~~~l~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s-~~~~~~~~~~~~~~g~~~~~l~KP~~ 109 (151)
T 3kcn_A 32 TCESGPEALACIKKSDPFSVIMVDMRMPG-MEGTEVIQKARLISPNSVYLMLT-GNQDLTTAMEAVNEGQVFRFLNKPCQ 109 (151)
T ss_dssp EESSHHHHHHHHHHSCCCSEEEEESCCSS-SCHHHHHHHHHHHCSSCEEEEEE-CGGGHHHHHHHHHHTCCSEEEESSCC
T ss_pred EeCCHHHHHHHHHcCCCCCEEEEeCCCCC-CcHHHHHHHHHhcCCCcEEEEEE-CCCCHHHHHHHHHcCCeeEEEcCCCC
Confidence 34555543333222222477777543111 11112232222 2344555544 445566778899999 9999999999
Q ss_pred HHHHHHH
Q 017962 155 VKAVLAL 161 (363)
Q Consensus 155 ~~ei~~l 161 (363)
++++.+.
T Consensus 110 ~~~L~~~ 116 (151)
T 3kcn_A 110 MSDIKAA 116 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 87
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=60.38 E-value=14 Score=38.51 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=29.1
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 156 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ 156 (363)
+..|++...+.+--+-.=++++. +|||++.+.|.+
T Consensus 215 ~~~iiakIE~~eav~nldeIl~~-~DgImVargDLg 249 (587)
T 2e28_A 215 HIQIIAKIENEEGVANIDEILEA-ADGLMVARGDLG 249 (587)
T ss_dssp TSEEEEEECSHHHHHTHHHHHHH-SSEEEEEHHHHH
T ss_pred CceEEEEECCHHHHHhHHHHHHh-CCEEEEcCchhh
Confidence 56899999998888888888888 799999987653
No 88
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=60.38 E-value=20 Score=33.04 Aligned_cols=82 Identities=20% Similarity=0.098 Sum_probs=50.3
Q ss_pred Chhhhhhhcccc--CCCceEEEeCCCCeeeehhh---hhhcccCCCceEEEEcC--CHHHHHHHH-HHhhcccCeEEE--
Q 017962 81 TPQELQQLQPAD--GQAENIVIDLPDWQVIPAEN---IVASFQGSGKTVFAISK--TPSEAQIFL-EALEQGLGGIVL-- 150 (363)
Q Consensus 81 ~~e~~e~~~~~~--~~~~~vvv~~~dW~iIPlEn---liA~~q~~~~~l~a~v~--~~~eA~~~~-~~LE~G~dGVvl-- 150 (363)
+++...+++... ..+|++-+.+. ..+|. +.+.....+...+..++ +.+++...+ .+++.|++|+..
T Consensus 157 s~~~i~~a~~~a~~~GAD~vkt~~~----~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsvgr 232 (263)
T 1w8s_A 157 APEIVAYAARIALELGADAMKIKYT----GDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGR 232 (263)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECC----SSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCC----CCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEeh
Confidence 566655543322 35899988753 13343 33333222556666677 888887555 688999999965
Q ss_pred ---ecCCH-HHHHHHHHhhc
Q 017962 151 ---KVEDV-KAVLALKEYFD 166 (363)
Q Consensus 151 ---~~~d~-~ei~~l~~~~~ 166 (363)
..+|| ..+++|++++.
T Consensus 233 aI~~~~dp~~~~~~l~~~v~ 252 (263)
T 1w8s_A 233 NVWQRRDALKFARALAELVY 252 (263)
T ss_dssp HHHTSTTHHHHHHHHHHHHC
T ss_pred hhcCCcCHHHHHHHHHHHHh
Confidence 55776 45566666654
No 89
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=60.06 E-value=49 Score=29.30 Aligned_cols=69 Identities=16% Similarity=0.011 Sum_probs=32.8
Q ss_pred CCceEEEeCCC----CeeeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHHh
Q 017962 94 QAENIVIDLPD----WQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEY 164 (363)
Q Consensus 94 ~~~~vvv~~~d----W~iIPlEnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~---d~~ei~~l~~~ 164 (363)
.++.+++...+ .+-+.+|.+-.-.+..+..+++ .++++++++.++ +.|+|||++-+. .+..+.+++++
T Consensus 169 G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~---~~Gadgv~vgsal~~~~~~~~~~~~~ 245 (266)
T 2w6r_A 169 GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF---LAGADAALAASVFHFREIDMRELKEY 245 (266)
T ss_dssp TCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHH---HHTCSEEEESTTTC------------
T ss_pred CCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHH---HcCCHHHHccHHHHcCCCCHHHHHHH
Confidence 46777775421 1112344332221222445666 468888888876 469999999763 23334444555
Q ss_pred h
Q 017962 165 F 165 (363)
Q Consensus 165 ~ 165 (363)
+
T Consensus 246 l 246 (266)
T 2w6r_A 246 L 246 (266)
T ss_dssp -
T ss_pred H
Confidence 4
No 90
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=59.99 E-value=36 Score=28.35 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=46.3
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 155 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~--~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~ 155 (363)
...+.++.-... ...+.++++..-.. ..--.++..+.. ....++......+ ......+++.|++|++.+|-++
T Consensus 30 ~~~~~~~al~~~---~~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~~ii~lt~~~~-~~~~~~~~~~ga~~~l~Kp~~~ 104 (220)
T 1p2f_A 30 TFLTGEDFLNDE---EAFHVVVLDVMLPD-YSGYEICRMIKETRPETWVILLTLLSD-DESVLKGFEAGADDYVTKPFNP 104 (220)
T ss_dssp EESSHHHHHHCC---SCCSEEEEESBCSS-SBHHHHHHHHHHHCTTSEEEEEESCCS-HHHHHHHHHHTCSEEEESSCCH
T ss_pred EECCHHHHHHhc---CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCcEEEEEcCCC-HHHHHHHHHcCCCEEEECCCCH
Confidence 355555433322 45677887433111 111123333322 3556666655443 4456788999999999999999
Q ss_pred HHHHHHH
Q 017962 156 KAVLALK 162 (363)
Q Consensus 156 ~ei~~l~ 162 (363)
+++.+.-
T Consensus 105 ~~L~~~i 111 (220)
T 1p2f_A 105 EILLARV 111 (220)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8875543
No 91
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=59.17 E-value=27 Score=34.09 Aligned_cols=115 Identities=13% Similarity=0.122 Sum_probs=65.5
Q ss_pred CchhHHHHHHHhCccEEEEcccc---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCc
Q 017962 20 ESKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 96 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~~---~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~ 96 (363)
...+.+..++|.|++.++++..+ ....+.+..+....| +..+ ....+.++++...+.. ..+|
T Consensus 108 ~~~~~~~~lieaGvd~I~idta~G~~~~~~~~I~~ik~~~p------------~v~V-i~G~v~t~e~A~~a~~--aGAD 172 (366)
T 4fo4_A 108 GNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYP------------HLEI-IGGNVATAEGARALIE--AGVS 172 (366)
T ss_dssp TCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCT------------TCEE-EEEEECSHHHHHHHHH--HTCS
T ss_pred hHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcC------------CCce-EeeeeCCHHHHHHHHH--cCCC
Confidence 45788999999999998874321 111111111111000 1221 1235888887665543 2689
Q ss_pred eEEEe---C--------CCCeeee----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 97 NIVID---L--------PDWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 97 ~vvv~---~--------~dW~iIP----lEnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
.|++- + .+|- +| +.++.+.+...+..|++ .+.+..++.. +|..|+|||.+-+-
T Consensus 173 ~I~vG~gpGs~~~tr~~~g~g-~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~k---ala~GAd~V~vGs~ 242 (366)
T 4fo4_A 173 AVKVGIGPGSICTTRIVTGVG-VPQITAIADAAGVANEYGIPVIADGGIRFSGDISK---AIAAGASCVMVGSM 242 (366)
T ss_dssp EEEECSSCSTTBCHHHHHCCC-CCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHH---HHHTTCSEEEESTT
T ss_pred EEEEecCCCCCCCcccccCcc-cchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHH---HHHcCCCEEEEChH
Confidence 99982 1 1232 23 22333322334567888 7888888654 45679999998765
No 92
>1gpp_A Endonuclease PI-SCEI; homing, protein splicing; 1.35A {Saccharomyces cerevisiae} SCOP: b.86.1.2
Probab=58.69 E-value=7.3 Score=36.69 Aligned_cols=32 Identities=25% Similarity=0.492 Sum_probs=26.9
Q ss_pred eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEE
Q 017962 244 AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTA 277 (363)
Q Consensus 244 aYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~ 277 (363)
.=|+|.+|..+-..+++.||+||. .||..|.+
T Consensus 16 T~VLMADGS~K~IEdI~vGD~Vmg--~DG~pR~V 47 (237)
T 1gpp_A 16 TNVLMADGSIECIENIEVGNKVMG--KDGRPREV 47 (237)
T ss_dssp CEEEBTTSCEEEGGGCCTTCEEEB--TTSSEEEE
T ss_pred CEEEEeCCCcceeeecccCCEEec--CCCCcceE
Confidence 358999999999999999999987 55666655
No 93
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=58.53 E-value=16 Score=32.47 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=55.5
Q ss_pred eeeEEEEEEEEEcCCcceEEEeec----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee----cCCceeEEE
Q 017962 176 SLMKATVTRVDVAGMGDRVCVDLC----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN----AGPVHAYVL 247 (363)
Q Consensus 176 ~L~~atVt~V~~vGmGdRVCVDtc----sll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVN----AGaVHaYv~ 247 (363)
...+++|++++.+.- |-..+-.. --+.||+=+.+--...+ +. ..|||-+- .+-+.-++.
T Consensus 18 ~~~~~~V~~~~~~~~-~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~------~~------~~r~ySi~s~~~~~~~~~~v~ 84 (271)
T 4fk8_A 18 KFDTATVLSVHHWTD-TLFSFTCTRDQALRFNNGEFTMVGLEVDG------KP------LTRAYSIVSPNYEEHLEFFSI 84 (271)
T ss_dssp CEEEEEEEEEEEEET-TEEEEEECCCTTCCCCTTCEEEEEEEETT------EE------EEEEEECCSCTTSSSEEEEEE
T ss_pred cceeEEEEEEEEcCC-CEEEEEEEcCCCCCcCCCCEEEEEccCCC------ce------eeeeEeccCCCCCCcEEEEEE
Confidence 467889999998863 32233221 12344443332111111 11 23444442 233332333
Q ss_pred -ec-CCceeeeeeccCCCeEEEE-cCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 248 -VP-GGKTCYLSELKSGKEVIVV-DQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 248 -~p-ggkT~YLSEL~sG~eVLvV-d~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
.| |.-|+||..|+.||+|.+- ...|+...... -..+|++||=+
T Consensus 85 ~~~~G~~s~~l~~l~~Gd~v~v~~gP~G~~~~~~~----~~~~~~vliag 130 (271)
T 4fk8_A 85 KVQNGPLTSRLQHLKVGDPVLIGKKPTGTLVADNL----LPGKTLWMLST 130 (271)
T ss_dssp CCTTCTTHHHHTTCCTTCEEEEESCCBCSCCGGGB----CCCSEEEEEEC
T ss_pred EECCCchhhHHhcCCCCCEEEEecCCCcceecCCc----CCCCeEEEEEC
Confidence 34 5679999999999999998 88886532100 02578887754
No 94
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=58.38 E-value=1.3e+02 Score=29.48 Aligned_cols=167 Identities=10% Similarity=0.037 Sum_probs=93.6
Q ss_pred HHHHHhhcccCeEEEecC------CHHHHHHHHHhhcccccccceeeeeEE--EEEEEEEcC-CcceEEEeecCCCCCCc
Q 017962 136 IFLEALEQGLGGIVLKVE------DVKAVLALKEYFDGRNEVSNLLSLMKA--TVTRVDVAG-MGDRVCVDLCSLMRPGE 206 (363)
Q Consensus 136 ~~~~~LE~G~dGVvl~~~------d~~ei~~l~~~~~~~~~~~~~l~L~~a--tVt~V~~vG-mGdRVCVDtcsll~~GE 206 (363)
.++..+..|..| .+.+- +.+|+.+|.+|+.........+.+... .-+...+.. .+.+.|. .+.|+.
T Consensus 75 ~l~~~i~~G~~~-~Mp~~~~~~~ls~~ei~~l~~yl~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~----~~~p~~ 149 (543)
T 1nir_A 75 YLEALITYGTPL-GMPNWGSSGELSKEQITLMAKYIQHTPPQPPEWGMPEMRESWKVLVKPEDRPKKQLN----DLDLPN 149 (543)
T ss_dssp HHHHHHHHCCSS-SCCCSTTTTSSCHHHHHHHHHHTTSCCCBCCCCCHHHHHHHCEESSCGGGSCSSCCS----CCCGGG
T ss_pred HHHHHHHcCCCC-CCCCcccccCCCHHHHHHHHHHHHhcccCCCccchhhhhhhhccccccccCCccccc----ccCCCC
Confidence 345555667655 33322 578999999999765443333332211 111122222 3455543 356665
Q ss_pred eEEEeccCce-EEEEeeccccCCCCCCCCeeeecC-CceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEE
Q 017962 207 GLLVGSFARG-LFLVHSECLESNYIASRPFRVNAG-PVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKI 284 (363)
Q Consensus 207 GmLVGs~s~g-lfLVhsEt~e~~Yva~RPFRVNAG-aVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKI 284 (363)
=++|.++..+ +.++..+|.+. + -++..| ++|+-...|+|++-|.+-.. +.|.+.|.+..+. ..+.+++.
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~~~--~----~~i~~g~~~~~v~~spdg~~l~v~~~d--~~V~v~D~~~~t~-~~~~~i~~ 220 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSKKI--V----KVIDTGYAVHISRMSASGRYLLVIGRD--ARIDMIDLWAKEP-TKVAEIKI 220 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTCCE--E----EEEECSTTEEEEEECTTSCEEEEEETT--SEEEEEETTSSSC-EEEEEEEC
T ss_pred EEEEEEcCCCeEEEEECCCceE--E----EEEecCcccceEEECCCCCEEEEECCC--CeEEEEECcCCCC-cEEEEEec
Confidence 5666665554 55555554321 0 122222 37887789999999998764 9999999842222 23566666
Q ss_pred eccceeEEEEEecCC----CCeEEEEEeEecceEEEecCC
Q 017962 285 ESRPLILVEAKTNSG----DQTLYGIILQNAETVALVSPC 320 (363)
Q Consensus 285 E~RPLllIeAe~~~~----~g~~~sviLQnAETIrLv~p~ 320 (363)
...|--+ .. +. +|+.+-+--....+|+++...
T Consensus 221 g~~p~~v---a~-sp~~~~dg~~l~v~~~~~~~v~v~D~~ 256 (543)
T 1nir_A 221 GIEARSV---ES-SKFKGYEDRYTIAGAYWPPQFAIMDGE 256 (543)
T ss_dssp CSEEEEE---EE-CCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred CCCcceE---Ee-CCCcCCCCCEEEEEEccCCeEEEEecc
Confidence 5655322 12 44 677655544557888888654
No 95
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=58.33 E-value=20 Score=31.42 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=21.1
Q ss_pred EEEEEe--CchhHHHHHHHhCccEEEEccc
Q 017962 14 RVWIWT--ESKQVMTAAVERGWNTFVFLSE 41 (363)
Q Consensus 14 ~vWvw~--~~K~~vt~AlEsG~~~~v~~~~ 41 (363)
.+|+-- .+.+.+..+++.|+|.+++..+
T Consensus 76 pv~v~ggi~~~~~~~~~l~~Gad~V~lg~~ 105 (244)
T 2y88_A 76 QVELSGGIRDDESLAAALATGCARVNVGTA 105 (244)
T ss_dssp EEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred cEEEECCCCCHHHHHHHHHcCCCEEEECch
Confidence 356531 4567799999999999998764
No 96
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=57.47 E-value=40 Score=31.38 Aligned_cols=107 Identities=11% Similarity=0.068 Sum_probs=60.8
Q ss_pred hhHHHHHHHhCccEEEEcccc-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEE
Q 017962 22 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~-~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 100 (363)
.+.+..+++.|++.+.+.-.+ .+..+.+. +.|.++. ..+.+.++...+. ...+|.+++
T Consensus 86 ~~~~~~~~~~g~d~V~~~~g~p~~~~~~l~-----------------~~gi~vi--~~v~t~~~a~~~~--~~GaD~i~v 144 (328)
T 2gjl_A 86 AEYRAAIIEAGIRVVETAGNDPGEHIAEFR-----------------RHGVKVI--HKCTAVRHALKAE--RLGVDAVSI 144 (328)
T ss_dssp HHHHHHHHHTTCCEEEEEESCCHHHHHHHH-----------------HTTCEEE--EEESSHHHHHHHH--HTTCSEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCCCcHHHHHHHH-----------------HcCCCEE--eeCCCHHHHHHHH--HcCCCEEEE
Confidence 578888999999988876432 22222221 1233332 4577777644432 235789998
Q ss_pred eCCC------CeeeehhhhhhcccCC-CceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 017962 101 DLPD------WQVIPAENIVASFQGS-GKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 101 ~~~d------W~iIPlEnliA~~q~~-~~~l~a~--v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
.+.. ...+|.-.++.++... +..|++. +++.+++..++ +.|+|||.+-+
T Consensus 145 ~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al---~~GAdgV~vGs 202 (328)
T 2gjl_A 145 DGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAAL---ALGADAINMGT 202 (328)
T ss_dssp ECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHH---HHTCSEEEESH
T ss_pred ECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH---HcCCCEEEECH
Confidence 6531 1123444555554322 3345543 56777766555 46999999864
No 97
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=57.42 E-value=48 Score=25.33 Aligned_cols=81 Identities=9% Similarity=0.102 Sum_probs=45.3
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~----~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
...+.++.-.... ....+.+|++..-. -..--.++..+.. ....++...... +......+++.|+++++.+|-
T Consensus 36 ~~~~~~~a~~~l~-~~~~dlii~D~~l~-~~~g~~~~~~lr~~~~~~~~pii~~s~~~-~~~~~~~~~~~ga~~~l~Kp~ 112 (144)
T 3kht_A 36 FVDNGAKALYQVQ-QAKYDLIILDIGLP-IANGFEVMSAVRKPGANQHTPIVILTDNV-SDDRAKQCMAAGASSVVDKSS 112 (144)
T ss_dssp EESSHHHHHHHHT-TCCCSEEEECTTCG-GGCHHHHHHHHHSSSTTTTCCEEEEETTC-CHHHHHHHHHTTCSEEEECCT
T ss_pred EECCHHHHHHHhh-cCCCCEEEEeCCCC-CCCHHHHHHHHHhcccccCCCEEEEeCCC-CHHHHHHHHHcCCCEEEECCC
Confidence 3445544332222 12456777732211 1122234554443 345566655443 335567788999999999999
Q ss_pred -CHHHHHHH
Q 017962 154 -DVKAVLAL 161 (363)
Q Consensus 154 -d~~ei~~l 161 (363)
+++++.+.
T Consensus 113 ~~~~~l~~~ 121 (144)
T 3kht_A 113 NNVTDFYGR 121 (144)
T ss_dssp TSHHHHHHH
T ss_pred CcHHHHHHH
Confidence 98877554
No 98
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=57.36 E-value=46 Score=29.36 Aligned_cols=105 Identities=14% Similarity=0.098 Sum_probs=60.9
Q ss_pred chhHHHHHHHhCccEEEEcccch---hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCce
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQ---QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 97 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~---~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 97 (363)
-.+++.++++.|++.+=++..+. +..+.+.+ + ...+++= .+.+.++.+.+.. . .+++
T Consensus 27 ~~~~~~~l~~gGv~~iel~~k~~~~~~~i~~~~~-----~------------~~~~gag-~vl~~d~~~~A~~-~-GAd~ 86 (207)
T 2yw3_A 27 LLGLARVLEEEGVGALEITLRTEKGLEALKALRK-----S------------GLLLGAG-TVRSPKEAEAALE-A-GAAF 86 (207)
T ss_dssp HHHHHHHHHHTTCCEEEEECSSTHHHHHHHHHTT-----S------------SCEEEEE-SCCSHHHHHHHHH-H-TCSE
T ss_pred HHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHhC-----C------------CCEEEeC-eEeeHHHHHHHHH-c-CCCE
Confidence 36788999999999887764332 22222222 1 1122222 2556666554433 2 5788
Q ss_pred EEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017962 98 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 154 (363)
Q Consensus 98 vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d 154 (363)
++.-..| .|+-..... .+..++-.+.|++|+..+ ++.|+|-|-+-|..
T Consensus 87 v~~~~~d---~~v~~~~~~---~g~~~i~G~~t~~e~~~A---~~~Gad~v~~fpa~ 134 (207)
T 2yw3_A 87 LVSPGLL---EEVAALAQA---RGVPYLPGVLTPTEVERA---LALGLSALKFFPAE 134 (207)
T ss_dssp EEESSCC---HHHHHHHHH---HTCCEEEEECSHHHHHHH---HHTTCCEEEETTTT
T ss_pred EEcCCCC---HHHHHHHHH---hCCCEEecCCCHHHHHHH---HHCCCCEEEEecCc
Confidence 8764333 333333333 233456568999998665 56799999998854
No 99
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=57.18 E-value=56 Score=28.47 Aligned_cols=112 Identities=16% Similarity=0.151 Sum_probs=60.0
Q ss_pred hhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecCh-hhhhhhccccCCCceEE
Q 017962 22 KQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTP-QELQQLQPADGQAENIV 99 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~-e~~e~~~~~~~~~~~vv 99 (363)
.+++.++.+.|++.+-+.. +....+++..++..+.. +.++ ++ ++. . -+..+ ++.+.+. ...++.|.
T Consensus 39 ~~~a~~~~~~G~~~i~~~~~~~i~~i~~~~~~p~i~~--~~~~--~~-~~~---~--~i~~~~~~i~~~~--~~Gad~V~ 106 (234)
T 1yxy_A 39 PLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGI--IKKD--YP-PQE---P--FITATMTEVDQLA--ALNIAVIA 106 (234)
T ss_dssp HHHHHHHHHHTCSEEEEESHHHHHHHHTTCCSCEEEE--CBCC--CT-TSC---C--CBSCSHHHHHHHH--TTTCSEEE
T ss_pred HHHHHHHHHCCCcEeecCCHHHHHHHHHhCCCCEEee--EcCC--CC-ccc---c--ccCChHHHHHHHH--HcCCCEEE
Confidence 6788889999999988763 22233333333222111 0111 11 110 1 12323 3333322 23578887
Q ss_pred EeCCC---CeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeE
Q 017962 100 IDLPD---WQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGI 148 (363)
Q Consensus 100 v~~~d---W~iIPlEnliA~~q~~--~~~l~a~v~~~~eA~~~~~~LE~G~dGV 148 (363)
+...- +.--.+.+++..+... +..++..+.+.+||+ .+++.|+|-|
T Consensus 107 l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~t~~ea~---~a~~~Gad~i 157 (234)
T 1yxy_A 107 MDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGL---VAHQAGIDFV 157 (234)
T ss_dssp EECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHH---HHHHTTCSEE
T ss_pred EcccccCCCCCccHHHHHHHHHHhCCCCeEEEeCCCHHHHH---HHHHcCCCEE
Confidence 75541 2112345666665433 557888999999965 4567899988
No 100
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}
Probab=57.06 E-value=14 Score=34.45 Aligned_cols=50 Identities=12% Similarity=0.176 Sum_probs=37.5
Q ss_pred hhhhhcccCCCceEEEE-cCCHHH-------HHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017962 111 ENIVASFQGSGKTVFAI-SKTPSE-------AQIFLEALEQGLGGIVLKVEDVKAVLALK 162 (363)
Q Consensus 111 EnliA~~q~~~~~l~a~-v~~~~e-------A~~~~~~LE~G~dGVvl~~~d~~ei~~l~ 162 (363)
..+|++++..+-++++. +++.++ +..+-..++.|+|||. ||+|+.+.++-
T Consensus 218 ~~~V~~ah~~G~~V~vWTv~t~d~~~~~~~~~~~~~~L~~~GVDgIi--TD~P~~l~~~L 275 (292)
T 3mz2_A 218 REVIDMLHERGVMCMISTAPSDDKLSTPESRAEAYRMIIRQGVDIIE--SDRPIEVAEAI 275 (292)
T ss_dssp HHHHHHHHHTTBCEEEECTTTGGGSSSHHHHHHHHHHHHHTTCCEEE--ESCHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEeCCCcchhhhccccHHHHHHHHHcCCCEEE--eCCHHHHHHHH
Confidence 46788888888888875 566542 5677788999999987 88998775443
No 101
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=56.95 E-value=45 Score=28.20 Aligned_cols=102 Identities=15% Similarity=0.107 Sum_probs=55.4
Q ss_pred hhHHHHHHHhCccEEEEcccc--h----hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCC
Q 017962 22 KQVMTAAVERGWNTFVFLSEN--Q----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 95 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~--~----~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~ 95 (363)
.+.+..+++.|++.+-+...+ . +.++++.++. +.-+ +..++. ++.+.+ ... .+
T Consensus 29 ~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~l~~~~-------------~~~~--v~v~v~----~~~~~a-~~~-ga 87 (215)
T 1xi3_A 29 VESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLT-------------REYD--ALFFVD----DRVDVA-LAV-DA 87 (215)
T ss_dssp HHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHH-------------HHTT--CEEEEE----SCHHHH-HHH-TC
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH-------------HHcC--CeEEEc----ChHHHH-HHc-CC
Confidence 478899999999998775321 1 2222222211 0111 122221 232222 222 56
Q ss_pred ceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 96 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 96 ~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
+.+.+...|. |.+.+ .++. .+..+...+.|.+|++. +.+.|+|.|++.+
T Consensus 88 d~v~l~~~~~---~~~~~-~~~~-~~~~~~v~~~t~~e~~~---~~~~g~d~i~~~~ 136 (215)
T 1xi3_A 88 DGVQLGPEDM---PIEVA-KEIA-PNLIIGASVYSLEEALE---AEKKGADYLGAGS 136 (215)
T ss_dssp SEEEECTTSC---CHHHH-HHHC-TTSEEEEEESSHHHHHH---HHHHTCSEEEEEC
T ss_pred CEEEECCccC---CHHHH-HHhC-CCCEEEEecCCHHHHHH---HHhcCCCEEEEcC
Confidence 7888865554 34433 3332 23345556789988764 5678999999854
No 102
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=56.86 E-value=38 Score=25.09 Aligned_cols=79 Identities=14% Similarity=0.166 Sum_probs=46.0
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCee--eehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQV--IPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~i--IPlEnliA~~q~----~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
...+.++.-.... ....+.+++ ||.. ..--.++..+.. ....++...... +......+++.|+++.+.+
T Consensus 31 ~~~~~~~a~~~~~-~~~~dlvi~---D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~K 105 (127)
T 2jba_A 31 EAEDYDSAVNQLN-EPWPDLILL---AWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARG-EEEDRVRGLETGADDCITK 105 (127)
T ss_dssp EECSHHHHHTTCS-SSCCSEEEE---ESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETT-HHHHHHTTCCCSCSEEEEE
T ss_pred EeCCHHHHHHHHh-ccCCCEEEE---ecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCC-CHHHHHHHHhcCCCeEEeC
Confidence 3555544322222 224567777 4432 122235555543 345566555443 3456678999999999999
Q ss_pred cCCHHHHHHH
Q 017962 152 VEDVKAVLAL 161 (363)
Q Consensus 152 ~~d~~ei~~l 161 (363)
|-+++++.+.
T Consensus 106 p~~~~~l~~~ 115 (127)
T 2jba_A 106 PFSPKELVAR 115 (127)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999887543
No 103
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=56.71 E-value=60 Score=25.43 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=47.2
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~----~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
...+.++.-.... ....+.+|++..-.. ..--.++..+.. ....++...... +......+++.|+++++.+|-
T Consensus 36 ~~~~~~~al~~l~-~~~~dlii~D~~l~~-~~g~~~~~~lr~~~~~~~~pii~~s~~~-~~~~~~~~~~~g~~~~l~KP~ 112 (154)
T 3gt7_A 36 HVRNGREAVRFLS-LTRPDLIISDVLMPE-MDGYALCRWLKGQPDLRTIPVILLTILS-DPRDVVRSLECGADDFITKPC 112 (154)
T ss_dssp EESSHHHHHHHHT-TCCCSEEEEESCCSS-SCHHHHHHHHHHSTTTTTSCEEEEECCC-SHHHHHHHHHHCCSEEEESSC
T ss_pred EeCCHHHHHHHHH-hCCCCEEEEeCCCCC-CCHHHHHHHHHhCCCcCCCCEEEEECCC-ChHHHHHHHHCCCCEEEeCCC
Confidence 3556554333222 224677888543111 111223333322 344566655433 344567788999999999999
Q ss_pred CHHHHHHH-HHhh
Q 017962 154 DVKAVLAL-KEYF 165 (363)
Q Consensus 154 d~~ei~~l-~~~~ 165 (363)
++.++... +.++
T Consensus 113 ~~~~l~~~i~~~l 125 (154)
T 3gt7_A 113 KDVVLASHVKRLL 125 (154)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 99877654 4444
No 104
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=56.31 E-value=39 Score=31.76 Aligned_cols=71 Identities=11% Similarity=0.047 Sum_probs=50.6
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017962 79 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 154 (363)
Q Consensus 79 v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d 154 (363)
|.++.++.++. ...++.|++.....+-=-++.++.....-+-.++++++|.+|++.+ ++.|+|=|=+...|
T Consensus 129 i~d~~qi~ea~--~~GAD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A---~~~ga~iIGinnr~ 199 (272)
T 3tsm_A 129 LFDPYQVYEAR--SWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERA---LKLSSRLLGVNNRN 199 (272)
T ss_dssp CCSTHHHHHHH--HTTCSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHH---TTSCCSEEEEECBC
T ss_pred cCCHHHHHHHH--HcCCCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH---HhcCCCEEEECCCC
Confidence 56666655543 3368888888776653346778777666677899999999998765 57899966666443
No 105
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=56.27 E-value=42 Score=26.41 Aligned_cols=116 Identities=9% Similarity=0.018 Sum_probs=66.1
Q ss_pred CcEEEEEe---CchhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhh
Q 017962 12 PKRVWIWT---ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQL 88 (363)
Q Consensus 12 ~K~vWvw~---~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~ 88 (363)
++.+.|-= .-..+.....+.|++-++++.+ .+..+.+..- |.. ..+...++++.++.+
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~-~~~~~~~~~~-----------------~~~-~~~gd~~~~~~l~~~ 66 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS-KEKIELLEDE-----------------GFD-AVIADPTDESFYRSL 66 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC-HHHHHHHHHT-----------------TCE-EEECCTTCHHHHHHS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC-HHHHHHHHHC-----------------CCc-EEECCCCCHHHHHhC
Confidence 44566632 1366777777889997777653 3444333221 111 122345666665554
Q ss_pred ccccCCCceEEEeCCCCee-eehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 89 QPADGQAENIVIDLPDWQV-IPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 89 ~~~~~~~~~vvv~~~dW~i-IPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
...+++.+|+...|... +-+- ..|+-.+ ..++++.+++.+.++.+ .+.|+|-|+....
T Consensus 67 --~~~~~d~vi~~~~~~~~n~~~~-~~a~~~~-~~~iia~~~~~~~~~~l---~~~G~~~vi~p~~ 125 (141)
T 3llv_A 67 --DLEGVSAVLITGSDDEFNLKIL-KALRSVS-DVYAIVRVSSPKKKEEF---EEAGANLVVLVAD 125 (141)
T ss_dssp --CCTTCSEEEECCSCHHHHHHHH-HHHHHHC-CCCEEEEESCGGGHHHH---HHTTCSEEEEHHH
T ss_pred --CcccCCEEEEecCCHHHHHHHH-HHHHHhC-CceEEEEEcChhHHHHH---HHcCCCEEECHHH
Confidence 23467888885554321 1111 1122223 66899999999988765 4679998776554
No 106
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=56.27 E-value=6.7 Score=40.43 Aligned_cols=134 Identities=19% Similarity=0.190 Sum_probs=83.6
Q ss_pred CchhHH-HHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCce
Q 017962 20 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 97 (363)
Q Consensus 20 ~~K~~v-t~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 97 (363)
.|++-+ ..|+|.|+|.+.++. .+++.+.++.++ +.+.|..+..+.+|.+++-++.+..-+...|-
T Consensus 208 kD~~Dl~~f~~~~~vD~Ia~SFVr~a~Dv~~~r~~-------------l~~~~~~~~iiaKIE~~eav~nldeIl~~sDg 274 (511)
T 3gg8_A 208 KDKHDILNFGIPMGCNFIAASFVQSADDVRYIRGL-------------LGPRGRHIRIIPKIENVEGLVNFDEILAEADG 274 (511)
T ss_dssp HHHHHHHHTTTTTTCCEEEETTCCSHHHHHHHHHH-------------HTGGGTTCEEEEEECSHHHHHTHHHHHHHCSC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHH-------------HHhcCCCCeEEEEECCHHHHHhHHHHHHhCCe
Confidence 356666 899999999877764 223444444332 22334456678899999988777665555688
Q ss_pred EEEeCCCCe-eeehhhh-------hhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC----
Q 017962 98 IVIDLPDWQ-VIPAENI-------VASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 154 (363)
Q Consensus 98 vvv~~~dW~-iIPlEnl-------iA~~q~~~~~l~a~-----------v~~~~eA~~~~~~LE~G~dGVvl~~~d---- 154 (363)
++|-..|-- =||+|.+ |.+....+.-++.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 275 imVaRGDLgvei~~e~v~~~qk~ii~~~~~~gkpvi~ATQmLeSMi~~p~PTRAEvsDVAnAV~dGaDavMLSgETA~G~ 354 (511)
T 3gg8_A 275 IMIARGDLGMEIPPEKVFLAQKMMIAKCNVVGKPVITATQMLESMIKNPRPTRAEAADVANAVLDGTDCVMLSGETANGE 354 (511)
T ss_dssp EEEEHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCS
T ss_pred EEEecchhcCcCCHHHHHHHHHHHHHHHHHcCCCeEEehHHHHHhhcCCCccHHHHHHHHHHHHhCCCEEEecccccCCC
Confidence 888443432 1466654 33332233334431 235578888899999999999996443
Q ss_pred -H-HHHHHHHHhhc
Q 017962 155 -V-KAVLALKEYFD 166 (363)
Q Consensus 155 -~-~ei~~l~~~~~ 166 (363)
| +.|+-+.+++.
T Consensus 355 yPveaV~~M~~I~~ 368 (511)
T 3gg8_A 355 FPVITVETMARICY 368 (511)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 3 55666666664
No 107
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=56.08 E-value=12 Score=34.92 Aligned_cols=116 Identities=7% Similarity=0.034 Sum_probs=62.0
Q ss_pred chhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCceEE
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIV 99 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~~~~~~~vv 99 (363)
-...+..|-|+|+|++++++=-.+...++... .+..|-....++.-+ +.+.++.++......=|.+
T Consensus 105 ~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~-------------~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~V 171 (252)
T 3tha_A 105 LEKFVKKAKSLGICALIVPELSFEESDDLIKE-------------CERYNIALITLVSVTTPKERVKKLVKHAKGFIYLL 171 (252)
T ss_dssp HHHHHHHHHHTTEEEEECTTCCGGGCHHHHHH-------------HHHTTCEECEEEETTSCHHHHHHHHTTCCSCEEEE
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH-------------HHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEEEE
Confidence 36688999999999999985212222222222 112233333333333 3566666665543332333
Q ss_pred Ee--CCCCe-ee--ehhhhhhcccCCC-ceE--EEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 100 ID--LPDWQ-VI--PAENIVASFQGSG-KTV--FAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 100 v~--~~dW~-iI--PlEnliA~~q~~~-~~l--~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
-. .++-+ -+ +++++++++.... ..+ -..++++++|+.+ .+ ++|||++-+.
T Consensus 172 s~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~---~~-~ADGVIVGSA 229 (252)
T 3tha_A 172 ASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRM---RK-VADGVIVGTS 229 (252)
T ss_dssp CCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHH---TT-TSSEEEECHH
T ss_pred ecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHH---Hh-cCCEEEECHH
Confidence 21 11221 22 2567777665432 223 3356788888754 34 6999998763
No 108
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=55.85 E-value=41 Score=27.97 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=47.3
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 155 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~--~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~ 155 (363)
...+.++.-.... ....+.++++..-.. ..--.++..+.. ....++...... +......+++.|++|++.+|-++
T Consensus 31 ~~~~~~~a~~~~~-~~~~dlvllD~~l~~-~~g~~~~~~lr~~~~~~~ii~ls~~~-~~~~~~~~~~~ga~~~l~Kp~~~ 107 (225)
T 1kgs_A 31 VCYDGEEGMYMAL-NEPFDVVILDIMLPV-HDGWEILKSMRESGVNTPVLMLTALS-DVEYRVKGLNMGADDYLPKPFDL 107 (225)
T ss_dssp EESSHHHHHHHHH-HSCCSEEEEESCCSS-SCHHHHHHHHHHTTCCCCEEEEESSC-HHHHHHHTCCCCCSEEEESSCCH
T ss_pred EECCHHHHHHHHh-cCCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCCEEEEeCCC-CHHHHHHHHhCCccEEEeCCCCH
Confidence 3556554333222 234677888543221 111233443322 345666655443 45567789999999999999999
Q ss_pred HHHHHH
Q 017962 156 KAVLAL 161 (363)
Q Consensus 156 ~ei~~l 161 (363)
+++.+.
T Consensus 108 ~~l~~~ 113 (225)
T 1kgs_A 108 RELIAR 113 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887554
No 109
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=55.79 E-value=9.7 Score=34.32 Aligned_cols=109 Identities=11% Similarity=0.110 Sum_probs=53.9
Q ss_pred HHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccccCCCceEEEeC--
Q 017962 26 TAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIVIDL-- 102 (363)
Q Consensus 26 t~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~e~~e~~~~~~~~~~~vvv~~-- 102 (363)
..|.+.|+|++++++...+...++-.. .+..|......+...+ .+.++.+.... .+++.+..
T Consensus 112 ~~a~~aGadgv~v~d~~~~~~~~~~~~-------------~~~~g~~~i~~~a~~t~~e~~~~~~~~~--~g~v~~~s~~ 176 (262)
T 1rd5_A 112 AKMKEAGVHGLIVPDLPYVAAHSLWSE-------------AKNNNLELVLLTTPAIPEDRMKEITKAS--EGFVYLVSVN 176 (262)
T ss_dssp HHHHHTTCCEEECTTCBTTTHHHHHHH-------------HHHTTCEECEEECTTSCHHHHHHHHHHC--CSCEEEECSS
T ss_pred HHHHHcCCCEEEEcCCChhhHHHHHHH-------------HHHcCCceEEEECCCCCHHHHHHHHhcC--CCeEEEecCC
Confidence 349999999999876433222222111 1122333233333333 33434444332 24554432
Q ss_pred --CCC--eeee-hhhhhhcccCC-CceEE--EEcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 103 --PDW--QVIP-AENIVASFQGS-GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 103 --~dW--~iIP-lEnliA~~q~~-~~~l~--a~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
++- ...| ...+++++... +..|+ ..++|++.++. +++.|+|||++-+
T Consensus 177 G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~---~~~~GAdgvvVGS 231 (262)
T 1rd5_A 177 GVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQ---IAQWGADGVIIGS 231 (262)
T ss_dssp CCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHH---HHHTTCSEEEECH
T ss_pred CCCCCCcCCCchHHHHHHHHHhhcCCeEEEECCcCCHHHHHH---HHHcCCCEEEECh
Confidence 121 2222 33466655421 22343 34566777665 5668999999865
No 110
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=55.76 E-value=14 Score=34.95 Aligned_cols=41 Identities=12% Similarity=-0.071 Sum_probs=35.3
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017962 123 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 166 (363)
Q Consensus 123 ~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~~ 166 (363)
+|...+.|.+||+.+ ++.|+|.|+|+.-+++++++..+.+.
T Consensus 196 ~I~Vev~t~eea~ea---l~aGaD~I~LDn~~~~~~~~~v~~l~ 236 (284)
T 1qpo_A 196 PCEVEVDSLEQLDAV---LPEKPELILLDNFAVWQTQTAVQRRD 236 (284)
T ss_dssp CEEEEESSHHHHHHH---GGGCCSEEEEETCCHHHHHHHHHHHH
T ss_pred CEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 899999999888765 55799999999999999988777663
No 111
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=55.74 E-value=59 Score=24.43 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=47.0
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017962 79 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 154 (363)
Q Consensus 79 v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~----~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d 154 (363)
..+.++.-..... ...+.++++..-.. ..--.++..+.. ....++......+ ......+++.|+++++.+|-+
T Consensus 40 ~~~~~~a~~~l~~-~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~kP~~ 116 (143)
T 3cnb_A 40 AYNPFDAGDLLHT-VKPDVVMLDLMMVG-MDGFSICHRIKSTPATANIIVIAMTGALT-DDNVSRIVALGAETCFGKPLN 116 (143)
T ss_dssp ECSHHHHHHHHHH-TCCSEEEEETTCTT-SCHHHHHHHHHTSTTTTTSEEEEEESSCC-HHHHHHHHHTTCSEEEESSCC
T ss_pred ECCHHHHHHHHHh-cCCCEEEEecccCC-CcHHHHHHHHHhCccccCCcEEEEeCCCC-HHHHHHHHhcCCcEEEeCCCC
Confidence 4555543332222 24677777543211 222234444433 3456776655543 445678899999999999999
Q ss_pred HHHHHHHH
Q 017962 155 VKAVLALK 162 (363)
Q Consensus 155 ~~ei~~l~ 162 (363)
++++.+.-
T Consensus 117 ~~~l~~~i 124 (143)
T 3cnb_A 117 FTLLEKTI 124 (143)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876543
No 112
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=55.53 E-value=22 Score=30.64 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=56.6
Q ss_pred chhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEE
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 100 (363)
+.+.+..|++.|+|.+.++..+.+..+...+. |..+ .+.+.++++..... ...++++.+
T Consensus 69 ~~~~i~~a~~~Gad~V~~~~~~~~~~~~~~~~-----------------g~~~--~~g~~t~~e~~~a~--~~G~d~v~v 127 (212)
T 2v82_A 69 KPEQVDALARMGCQLIVTPNIHSEVIRRAVGY-----------------GMTV--CPGCATATEAFTAL--EAGAQALKI 127 (212)
T ss_dssp SHHHHHHHHHTTCCEEECSSCCHHHHHHHHHT-----------------TCEE--ECEECSHHHHHHHH--HTTCSEEEE
T ss_pred CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHc-----------------CCCE--EeecCCHHHHHHHH--HCCCCEEEE
Confidence 45678999999999988766544443332222 1111 11257777754432 235788887
Q ss_pred eCCCCeeeehhh---hhhcccCCCceEEEEcC-CHHHHHHHHHHhhcccCeEEEec
Q 017962 101 DLPDWQVIPAEN---IVASFQGSGKTVFAISK-TPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 101 ~~~dW~iIPlEn---liA~~q~~~~~l~a~v~-~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
...+ ...++. +.+.+. .+..+++.-. +.++++.+ ++.|+|||++-+
T Consensus 128 ~~t~--~~g~~~~~~l~~~~~-~~ipvia~GGI~~~~i~~~---~~~Ga~gv~vGs 177 (212)
T 2v82_A 128 FPSS--AFGPQYIKALKAVLP-SDIAVFAVGGVTPENLAQW---IDAGCAGAGLGS 177 (212)
T ss_dssp TTHH--HHCHHHHHHHHTTSC-TTCEEEEESSCCTTTHHHH---HHHTCSEEEECT
T ss_pred ecCC--CCCHHHHHHHHHhcc-CCCeEEEeCCCCHHHHHHH---HHcCCCEEEECh
Confidence 3221 112232 222221 1245665421 25555544 557999999764
No 113
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=55.36 E-value=7.4 Score=40.22 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=83.8
Q ss_pred CchhHH-HHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCce
Q 017962 20 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 97 (363)
Q Consensus 20 ~~K~~v-t~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 97 (363)
.|++-+ .-|+|.|+|.+.++. .+++.+.++.++ +.+.|+.+..+.+|.+++-++.+..-+...|-
T Consensus 217 kD~~dl~~f~~~~~vD~Ia~SFVr~a~Dv~~~r~~-------------l~~~g~~i~IIAKIE~~eav~nldeIl~~sDG 283 (520)
T 3khd_A 217 KDKNDILNFAIPMGCNFIAASFIQSADDVRLIRNL-------------LGPRGRHIKIIPKIENIEGIIHFDKILAESDG 283 (520)
T ss_dssp HHHHHHHHTHHHHTCCEEEETTCCSHHHHHHHHHH-------------HTTTTTTSEEEEEECSHHHHHTHHHHHHHSSC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCCcEEEEECCHHHHHhHHHHHHhCCc
Confidence 356666 899999999877764 223444444332 33345566788899999988876665555687
Q ss_pred EEEeCCCCe-eeehhhhh-------hcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC----
Q 017962 98 IVIDLPDWQ-VIPAENIV-------ASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 154 (363)
Q Consensus 98 vvv~~~dW~-iIPlEnli-------A~~q~~~~~l~a~-----------v~~~~eA~~~~~~LE~G~dGVvl~~~d---- 154 (363)
++|-..|-- =||+|.+- .+....+.-++.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 284 IMVARGDLgvEi~~e~vp~~Qk~iI~~c~~aGKPVi~ATQMLeSMi~~p~PTRAEvsDVanAVldGaDavMLSgETA~G~ 363 (520)
T 3khd_A 284 IMIARGDLGMEISPEKVFLAQKLMISKCNLQGKPIITATQMLESMTKNPRPTRAEVTDVANAVLDGTDCVMLSGETAGGK 363 (520)
T ss_dssp EEECHHHHTTTSCGGGHHHHHHHHHHHHHHHTCCEEECCCCCGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHSCS
T ss_pred EEEccccccccCCHHHHHHHHHHHHHHHHHcCCCeEEeehhhHHHhcCCCccHHHHHHHHHHHHhCCCEEEecccccCCc
Confidence 887433321 14666643 2222222234421 235578888899999999999996443
Q ss_pred -H-HHHHHHHHhhc
Q 017962 155 -V-KAVLALKEYFD 166 (363)
Q Consensus 155 -~-~ei~~l~~~~~ 166 (363)
| +.|+-+.+++.
T Consensus 364 yPveaV~~M~~I~~ 377 (520)
T 3khd_A 364 FPVEAVTIMSKICL 377 (520)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 3 56666666664
No 114
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=55.29 E-value=17 Score=32.16 Aligned_cols=123 Identities=14% Similarity=0.134 Sum_probs=61.1
Q ss_pred chhHHHHHHHhCccEEEEcccch-hh-hhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC---CC
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQ-QL-AIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG---QA 95 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~-~~-~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~---~~ 95 (363)
..+.+..+++.|+|.+.+..+.- +. .+.+.. +.+.|+.++..+.-.++ ++.+..... ..
T Consensus 76 ~~~~i~~~~~agad~v~vH~~~~~~~~~~~~~~--------------i~~~g~~igv~~~p~t~--~e~~~~~~~~~~~~ 139 (228)
T 1h1y_A 76 PSDYVEPLAKAGASGFTFHIEVSRDNWQELIQS--------------IKAKGMRPGVSLRPGTP--VEEVFPLVEAENPV 139 (228)
T ss_dssp GGGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHH--------------HHHTTCEEEEEECTTSC--GGGGHHHHHSSSCC
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccHHHHHHHH--------------HHHcCCCEEEEEeCCCC--HHHHHHHHhcCCCC
Confidence 34568999999999998876421 11 111111 12235666643322333 233433333 67
Q ss_pred ceEEEeCC---------CCeeeeh-hhhhhcccCCCceEE--EEcCCHHHHHHHHHHhhcccCeEEEe-----cCCH-HH
Q 017962 96 ENIVIDLP---------DWQVIPA-ENIVASFQGSGKTVF--AISKTPSEAQIFLEALEQGLGGIVLK-----VEDV-KA 157 (363)
Q Consensus 96 ~~vvv~~~---------dW~iIPl-EnliA~~q~~~~~l~--a~v~~~~eA~~~~~~LE~G~dGVvl~-----~~d~-~e 157 (363)
+++.+... +|+.++. +.+-+... +..++ ..++. +.++ ++++.|+|++++- .+|+ ..
T Consensus 140 d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~--~~pi~v~GGI~~-~ni~---~~~~aGaD~vvvGsai~~~~d~~~~ 213 (228)
T 1h1y_A 140 ELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYP--SLDIEVDGGLGP-STID---VAASAGANCIVAGSSIFGAAEPGEV 213 (228)
T ss_dssp SEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT--TSEEEEESSCST-TTHH---HHHHHTCCEEEESHHHHTSSCHHHH
T ss_pred CEEEEEeecCCCCcccCCHHHHHHHHHHHHhcC--CCCEEEECCcCH-HHHH---HHHHcCCCEEEECHHHHCCCCHHHH
Confidence 88888321 3333221 11111111 22333 33433 4443 3455599999975 3576 45
Q ss_pred HHHHHHhh
Q 017962 158 VLALKEYF 165 (363)
Q Consensus 158 i~~l~~~~ 165 (363)
+++|++.+
T Consensus 214 ~~~l~~~~ 221 (228)
T 1h1y_A 214 ISALRKSV 221 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 115
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=55.20 E-value=49 Score=26.44 Aligned_cols=104 Identities=12% Similarity=0.083 Sum_probs=61.6
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEEe
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 101 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~ 101 (363)
..+.....+.|++-++++.+ .+..+.+.+. |-. ..+...++++.++.+. ...++.+|+.
T Consensus 20 ~~la~~L~~~g~~v~vid~~-~~~~~~~~~~-----------------g~~-~i~gd~~~~~~l~~a~--i~~ad~vi~~ 78 (140)
T 3fwz_A 20 SLLGEKLLASDIPLVVIETS-RTRVDELRER-----------------GVR-AVLGNAANEEIMQLAH--LECAKWLILT 78 (140)
T ss_dssp HHHHHHHHHTTCCEEEEESC-HHHHHHHHHT-----------------TCE-EEESCTTSHHHHHHTT--GGGCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEECC-HHHHHHHHHc-----------------CCC-EEECCCCCHHHHHhcC--cccCCEEEEE
Confidence 56666667789998777764 4444443332 111 1222344555544432 3357888876
Q ss_pred CCCCeeeehhhh----hhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 102 LPDWQVIPAENI----VASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 102 ~~dW~iIPlEnl----iA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
..+- .+|+ .++-.....++++.+++.+.++.+. +.|+|-|+....
T Consensus 79 ~~~~----~~n~~~~~~a~~~~~~~~iiar~~~~~~~~~l~---~~G~d~vi~p~~ 127 (140)
T 3fwz_A 79 IPNG----YEAGEIVASARAKNPDIEIIARAHYDDEVAYIT---ERGANQVVMGER 127 (140)
T ss_dssp CSCH----HHHHHHHHHHHHHCSSSEEEEEESSHHHHHHHH---HTTCSEEEEHHH
T ss_pred CCCh----HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHH---HCCCCEEECchH
Confidence 5553 3443 1222234569999999999987664 489998886544
No 116
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=55.19 E-value=62 Score=24.05 Aligned_cols=83 Identities=13% Similarity=0.120 Sum_probs=49.2
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHH----HHHHHHHhhcccCeEEEe
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSE----AQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q--~~~~~l~a~v~~~~e----A~~~~~~LE~G~dGVvl~ 151 (363)
...+.++...+... ..+.++++..-. -..--.++..+. .....++......++ ++....+++.|+++.+.+
T Consensus 32 ~~~~~~~~~~~~~~--~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~K 108 (135)
T 3eqz_A 32 AFQHPRAFLTLSLN--KQDIIILDLMMP-DMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTK 108 (135)
T ss_dssp EESCHHHHTTSCCC--TTEEEEEECCTT-TTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred eecCHHHHHHhhcc--CCCEEEEeCCCC-CCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCC
Confidence 35566654433322 256677743211 111222333332 234567777666654 577888999999999999
Q ss_pred cCCHHHHHHHHH
Q 017962 152 VEDVKAVLALKE 163 (363)
Q Consensus 152 ~~d~~ei~~l~~ 163 (363)
|-++.++.+.-.
T Consensus 109 P~~~~~l~~~l~ 120 (135)
T 3eqz_A 109 PINTEVLTCFLT 120 (135)
T ss_dssp SCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999988765433
No 117
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=54.40 E-value=33 Score=30.07 Aligned_cols=28 Identities=7% Similarity=0.020 Sum_probs=21.3
Q ss_pred EEEEEe--CchhHHHHHHHhCccEEEEccc
Q 017962 14 RVWIWT--ESKQVMTAAVERGWNTFVFLSE 41 (363)
Q Consensus 14 ~vWvw~--~~K~~vt~AlEsG~~~~v~~~~ 41 (363)
.+++-. .+.+.+..+++.|+|.+++...
T Consensus 76 pvi~~ggI~~~~~~~~~~~~Gad~V~lg~~ 105 (253)
T 1thf_D 76 PFTVGGGIHDFETASELILRGADKVSINTA 105 (253)
T ss_dssp CEEEESSCCSHHHHHHHHHTTCSEEEESHH
T ss_pred CEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 366632 4567799999999999998764
No 118
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=53.98 E-value=22 Score=27.07 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=34.1
Q ss_pred CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 120 SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 120 ~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
....++......+.......+++.|+++++.+|-+++++...
T Consensus 79 ~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~ 120 (140)
T 3grc_A 79 RDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILS 120 (140)
T ss_dssp TTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHH
Confidence 356788888777777666689999999999999999887654
No 119
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=53.82 E-value=53 Score=28.81 Aligned_cols=111 Identities=20% Similarity=0.158 Sum_probs=59.0
Q ss_pred eeeEEEEEEEEEcCCcc-eEEEeecC-----CCCCCceEEEeccCceEEEEeeccccCCCC-CCCCeeeecCCceeEEEe
Q 017962 176 SLMKATVTRVDVAGMGD-RVCVDLCS-----LMRPGEGLLVGSFARGLFLVHSECLESNYI-ASRPFRVNAGPVHAYVLV 248 (363)
Q Consensus 176 ~L~~atVt~V~~vGmGd-RVCVDtcs-----ll~~GEGmLVGs~s~glfLVhsEt~e~~Yv-a~RPFRVNAGaVHaYv~~ 248 (363)
...+++|++++.+.-.= ++.+..-. -+.||+=+.+--...+ +....||. ++-|= +.|-++=.|..
T Consensus 11 ~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g------~~~~R~ySi~s~~~--~~~~~~l~vk~ 82 (270)
T 2cnd_A 11 GRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEG------KLCMRAYTPTSMVD--EIGHFDLLVKV 82 (270)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETT------EEEEEEECCCSCTT--CCSEEEEEEEC
T ss_pred ceEEEEEEEEEEeCCCeEEEEEECCCCccccCCCCCCEEEEEeeeCC------cEEEEeeccCCCcc--CCCEEEEEEEE
Confidence 34678999998886532 34444322 2466664433111111 11223442 11121 13445555554
Q ss_pred ----------c-CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEE-----eccceeEEEE
Q 017962 249 ----------P-GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKI-----ESRPLILVEA 294 (363)
Q Consensus 249 ----------p-ggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKI-----E~RPLllIeA 294 (363)
+ |.-|+||+.|+.||+|.+-...|+.....-|.-.+ ..+|++||=+
T Consensus 83 ~~~~~~~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliag 144 (270)
T 2cnd_A 83 YFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICG 144 (270)
T ss_dssp CCSSCBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEE
T ss_pred eccCcccccCCCCchhhHHhcCCCCCEEEEECCcccceeccccceeccCCcccCCEEEEEec
Confidence 2 44799999999999999988777621100011122 3578888855
No 120
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=53.66 E-value=69 Score=24.43 Aligned_cols=81 Identities=15% Similarity=0.127 Sum_probs=47.4
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~----~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
...+.++.-..... ...+.+|++..-.. ..--.++..+.. ....++...... +......+++.|+++++.+|-
T Consensus 37 ~~~~~~~a~~~l~~-~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~pii~ls~~~-~~~~~~~~~~~g~~~~l~kp~ 113 (147)
T 2zay_A 37 QCGNAIEAVPVAVK-THPHLIITEANMPK-ISGMDLFNSLKKNPQTASIPVIALSGRA-TAKEEAQLLDMGFIDFIAKPV 113 (147)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESCCSS-SCHHHHHHHHHTSTTTTTSCEEEEESSC-CHHHHHHHHHHTCSEEEESSC
T ss_pred EeCCHHHHHHHHHc-CCCCEEEEcCCCCC-CCHHHHHHHHHcCcccCCCCEEEEeCCC-CHHHHHHHHhCCCCEEEeCCC
Confidence 34555543332222 24677887533111 222334444443 345666665543 345667888999999999999
Q ss_pred CHHHHHHH
Q 017962 154 DVKAVLAL 161 (363)
Q Consensus 154 d~~ei~~l 161 (363)
+++++...
T Consensus 114 ~~~~L~~~ 121 (147)
T 2zay_A 114 NAIRLSAR 121 (147)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99887554
No 121
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=53.43 E-value=7.8 Score=40.71 Aligned_cols=134 Identities=13% Similarity=0.195 Sum_probs=84.8
Q ss_pred CchhHHHHHHHhCccEEEEcc-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceE
Q 017962 20 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 98 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 98 (363)
.|++-+.-|+|.|+|.+.++. .+++.+.++.++ +.+.|..+..+.+|.+++-++.+..-+...|-+
T Consensus 194 kD~~dl~f~~~~~vD~Ia~SFVr~a~Dv~~~r~~-------------l~~~~~~i~IiaKIE~~eav~nldeIl~~sDGI 260 (606)
T 3t05_A 194 KDAEDIRFGIKENVDFIAASFVRRPSDVLEIREI-------------LEEQKANISVFPKIENQEGIDNIEEILEVSDGL 260 (606)
T ss_dssp HHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHH-------------HHHTTCCCEEEECCCSHHHHHTHHHHHHHCSCE
T ss_pred hHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCCeEEEEeCCHHHHHhHHHHHHhCCEE
Confidence 478889999999999776653 223444444332 333345667888999999887776655557888
Q ss_pred EEeCCCCe-eeehhhh-------hhcccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 017962 99 VIDLPDWQ-VIPAENI-------VASFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED----- 154 (363)
Q Consensus 99 vv~~~dW~-iIPlEnl-------iA~~q~~~~~l~a-----------~v~~~~eA~~~~~~LE~G~dGVvl~~~d----- 154 (363)
+|-..|-- =||+|++ |.+....+.-++. ...+-.|+--...+.--|+|+|+|..+.
T Consensus 261 mVARGDLgvei~~e~vp~~Qk~ii~~~~~~gkpvi~ATQMLeSMi~~p~PTRAEvsDVanAv~dGaDavMLSgETA~G~y 340 (606)
T 3t05_A 261 MVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLY 340 (606)
T ss_dssp EEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESSSSGGGTTCSSCCHHHHHHHHHHHHHTCSEEEECHHHHSCSC
T ss_pred EEccccccCcCCHHHHHHHHHHHHHHHHHcCCCeEEehHHHHHhhcCCCccHHHHHHHHHHHHcCCCEEEecccccCCCC
Confidence 88433332 2455553 3332222233443 1234578888889999999999998432
Q ss_pred -HHHHHHHHHhhc
Q 017962 155 -VKAVLALKEYFD 166 (363)
Q Consensus 155 -~~ei~~l~~~~~ 166 (363)
.+.|+-+.+++.
T Consensus 341 PveaV~~m~~I~~ 353 (606)
T 3t05_A 341 PEEAVKTMRNIAV 353 (606)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 356666666654
No 122
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=53.12 E-value=54 Score=24.79 Aligned_cols=66 Identities=8% Similarity=0.124 Sum_probs=40.6
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccCC----CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQGS----GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~~----~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..+.++++..-.. ..--.++..+... ...++...... +......+++.|+++++.+|-+++++.+.
T Consensus 62 ~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~t~~~-~~~~~~~~~~~g~~~~l~kP~~~~~l~~~ 131 (149)
T 1k66_A 62 RPAVILLDLNLPG-TDGREVLQEIKQDEVLKKIPVVIMTTSS-NPKDIEICYSYSISSYIVKPLEIDRLTET 131 (149)
T ss_dssp CCSEEEECSCCSS-SCHHHHHHHHTTSTTGGGSCEEEEESCC-CHHHHHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCcEEEEECCCCC-CCHHHHHHHHHhCcccCCCeEEEEeCCC-CHHHHHHHHHCCCCEEEeCCCCHHHHHHH
Confidence 4577777432111 2223445555432 34566655543 34566778899999999999999887654
No 123
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5
Probab=53.11 E-value=84 Score=28.81 Aligned_cols=135 Identities=12% Similarity=0.064 Sum_probs=75.5
Q ss_pred CcEEEEEe--CchhHHHHHHHhCccEEEEcccch--h----hhhhccceeeeeeeeecCCcccc--CCCCeeEEEEEecC
Q 017962 12 PKRVWIWT--ESKQVMTAAVERGWNTFVFLSENQ--Q----LAIDWSTIALLDPLFIKEGEVYD--SGDRRVGSIIEVST 81 (363)
Q Consensus 12 ~K~vWvw~--~~K~~vt~AlEsG~~~~v~~~~~~--~----~~~~~~~i~~i~~l~~~~g~~~~--~~gk~v~~~~~v~~ 81 (363)
....|+|. .+.+.+..|+.+|+|.++++-||. + +.....++ ... +.. ++ ..+..+ ++.|.+
T Consensus 7 ~~rs~L~~p~~~~~~~~~a~~~gaD~vilDlEdav~~~~~~k~~Ar~~v--~~~--l~~---~~~~~~~~~~--~VRv~~ 77 (284)
T 1sgj_A 7 LLRSVLFAPGNRADLIAKLPRSAPDAVVIDLEDAVPGTAEAKAAARPVA--HDA--ARD---LIAAAPHLAV--FVRVNA 77 (284)
T ss_dssp CCSEEEEEETTCHHHHHHTTTTCCSEEEEESSTTSCSSHHHHHHHHHHH--HHH--HHH---HHHHSTTSEE--EEECCC
T ss_pred CCceEEEccCCCHHHHHHHHhCCCCEEEEECCCCCCCchhhHHHHHHHH--HHH--HHh---cccccCCCeE--EEEeCC
Confidence 34567765 788999999999999999997652 1 11111111 000 000 01 123333 344553
Q ss_pred ---hhhhhhhccccCCCceEEEeCCC--CeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhc-ccCeEEEecCCH
Q 017962 82 ---PQELQQLQPADGQAENIVIDLPD--WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDV 155 (363)
Q Consensus 82 ---~e~~e~~~~~~~~~~~vvv~~~d--W~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~-G~dGVvl~~~d~ 155 (363)
+...+.+...+...+.|++-.-. .++--+..++... +.+..+++.+.+++-...+-+++.. |+||+.+-+.|.
T Consensus 78 ~~~~~~~~dl~~~l~g~~~i~lPkv~s~~~v~~~~~~l~~~-g~~~~i~~~IEt~~av~~~~eIa~~~~vd~l~iG~~DL 156 (284)
T 1sgj_A 78 LHSPYFEDDLSVLTPELSGVVVPKLEMGAEARQVAQMLQER-SLPLPILAGLETGAGVWNAREIMEVPEVAWAYFGAEDY 156 (284)
T ss_dssp TTSTTHHHHGGGCCTTSSEEEECSCCSHHHHHHHHHHHHHT-TCCCCEEEEECSHHHHHTHHHHHTSTTEEEEEECHHHH
T ss_pred CCCHhHHHHHHHHhccCCEEEeCCCCCHHHHHHHHHHHHhc-CCCeEEEEEecCHHHHHHHHHHHcCCCCcEEEECHHHH
Confidence 44222333222245666663221 1121222233222 2356799999999988888888853 899999999876
Q ss_pred H
Q 017962 156 K 156 (363)
Q Consensus 156 ~ 156 (363)
.
T Consensus 157 ~ 157 (284)
T 1sgj_A 157 T 157 (284)
T ss_dssp H
T ss_pred H
Confidence 5
No 124
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=52.69 E-value=54 Score=25.41 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=45.4
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 155 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q--~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~ 155 (363)
...+.++.-..... ...+.++++..-.. ..--.++..+. .....++..... .+......+++.|+++++.+|-++
T Consensus 46 ~~~~~~~a~~~l~~-~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~l~Kp~~~ 122 (152)
T 3eul_A 46 EADDGAAALELIKA-HLPDVALLDYRMPG-MDGAQVAAAVRSYELPTRVLLISAH-DEPAIVYQALQQGAAGFLLKDSTR 122 (152)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEETTCSS-SCHHHHHHHHHHTTCSCEEEEEESC-CCHHHHHHHHHTTCSEEEETTCCH
T ss_pred EeCCHHHHHHHHHh-cCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCeEEEEEcc-CCHHHHHHHHHcCCCEEEecCCCH
Confidence 34555443332222 24677777533111 11223333332 234456655544 344567788999999999999999
Q ss_pred HHHHHH
Q 017962 156 KAVLAL 161 (363)
Q Consensus 156 ~ei~~l 161 (363)
+++.+.
T Consensus 123 ~~l~~~ 128 (152)
T 3eul_A 123 TEIVKA 128 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877644
No 125
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=52.49 E-value=26 Score=25.87 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=39.2
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~-~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..+.++++..-.. ..--.++..++. ....++...... +......+++.|+++.+.+|-+++++...
T Consensus 46 ~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~ 112 (122)
T 1zgz_A 46 SVDLILLDINLPD-ENGLMLTRALRERSTVGIILVTGRS-DRIDRIVGLEMGADDYVTKPLELRELVVR 112 (122)
T ss_dssp CCSEEEEESCCSS-SCHHHHHHHHHTTCCCEEEEEESSC-CHHHHHHHHHHTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEeCCCCC-CChHHHHHHHHhcCCCCEEEEECCC-ChhhHHHHHHhCHHHHccCCCCHHHHHHH
Confidence 4577777433111 122234444432 244566555443 33455778999999999999998877543
No 126
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=52.29 E-value=31 Score=33.37 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=61.9
Q ss_pred hhHHHHHHHhCccEEEEcccc--h----hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCC
Q 017962 22 KQVMTAAVERGWNTFVFLSEN--Q----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 95 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~--~----~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~ 95 (363)
.+.+..++|.|+|.+++...+ . +.++++.+.. +.++. ...+.++++.+.+.. ..+
T Consensus 107 ~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~~~~----------------~~~Vi-vg~v~t~e~A~~l~~--aGa 167 (361)
T 3khj_A 107 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKM----------------NIDVI-VGNVVTEEATKELIE--NGA 167 (361)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHHHHC----------------CCEEE-EEEECSHHHHHHHHH--TTC
T ss_pred HHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHHHhc----------------CCcEE-EccCCCHHHHHHHHH--cCc
Confidence 788999999999988875322 1 1222111110 11111 125778887655543 358
Q ss_pred ceEEEeC-----------CCCeeee----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 96 ENIVIDL-----------PDWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 96 ~~vvv~~-----------~dW~iIP----lEnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
|.|++.. .+|. .| +.++...++..+..|+| .+.+.+++..++ ..|+|||.+-+-
T Consensus 168 D~I~VG~~~Gs~~~tr~~~g~g-~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kal---a~GAd~V~vGs~ 238 (361)
T 3khj_A 168 DGIKVGIGPGSICTTRIVAGVG-VPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKAL---AVGASSVMIGSI 238 (361)
T ss_dssp SEEEECSSCCTTCCHHHHTCBC-CCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHH---HHTCSEEEESTT
T ss_pred CEEEEecCCCcCCCcccccCCC-CCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHH---HcCCCEEEEChh
Confidence 8898821 1232 23 22232222222456888 578888877665 459999998765
No 127
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=52.17 E-value=77 Score=24.59 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=46.7
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcc-cCeEEEecCC
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQG-LGGIVLKVED 154 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q--~~~~~l~a~v~~~~eA~~~~~~LE~G-~dGVvl~~~d 154 (363)
...+.++.-.... ....+.+|++..-.. ..--.++..+. .....++..... .+......+++.| +++++.+|-+
T Consensus 43 ~~~~~~~a~~~l~-~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~~l~KP~~ 119 (153)
T 3hv2_A 43 FARDATQALQLLA-SREVDLVISAAHLPQ-MDGPTLLARIHQQYPSTTRILLTGD-PDLKLIAKAINEGEIYRYLSKPWD 119 (153)
T ss_dssp EESSHHHHHHHHH-HSCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSEEEEECCC-CCHHHHHHHHHTTCCSEEECSSCC
T ss_pred EECCHHHHHHHHH-cCCCCEEEEeCCCCc-CcHHHHHHHHHhHCCCCeEEEEECC-CCHHHHHHHHhCCCcceEEeCCCC
Confidence 4556555333222 234677887543111 11112333322 234566665544 4445677889999 9999999999
Q ss_pred HHHHHHH
Q 017962 155 VKAVLAL 161 (363)
Q Consensus 155 ~~ei~~l 161 (363)
++++...
T Consensus 120 ~~~l~~~ 126 (153)
T 3hv2_A 120 DQELLLA 126 (153)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 128
>2aam_A Hypothetical protein TM1410; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE UNL; 2.20A {Thermotoga maritima} SCOP: c.1.8.15
Probab=51.98 E-value=28 Score=33.24 Aligned_cols=114 Identities=11% Similarity=0.116 Sum_probs=60.7
Q ss_pred EEEeCchhHHHHHHHhCccEEEEcccchh------hhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhc
Q 017962 16 WIWTESKQVMTAAVERGWNTFVFLSENQQ------LAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQ 89 (363)
Q Consensus 16 Wvw~~~K~~vt~AlEsG~~~~v~~~~~~~------~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~ 89 (363)
|.|--.....++-..+..|-+|++++.-+ ...++. .++..|+++-.|+.+.+-|+-..-.
T Consensus 23 w~~~l~~~~~~~l~~~~yd~vViD~~~~g~~~~~~t~~~i~--------------~L~~~G~~viaYlSvGe~E~~R~y~ 88 (309)
T 2aam_A 23 WLYQLQNADPVEISSSGFEIAVIDYSKDGSESGEYSPEEIK--------------IMVDAGVVPVAYVNIGQAEDYRFYW 88 (309)
T ss_dssp CEEECSSCCHHHHHTSCCSEEEECSBSSSSGGGBCCHHHHH--------------HHHHTTCEEEEEEESSEEETTSTTC
T ss_pred EEEEeCCCChhhhhhcCCCEEEEcCCcccccccCCCHHHHH--------------HHHhCCCEEEEEEecccccccchhh
Confidence 55543333333333478999998875210 011111 1344588888999988866521111
Q ss_pred cccCCCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHH----HHHHhhcccCeEEEecCCH
Q 017962 90 PADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQI----FLEALEQGLGGIVLKVEDV 155 (363)
Q Consensus 90 ~~~~~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~----~~~~LE~G~dGVvl~~~d~ 155 (363)
...|+.+|-.-|.....+=++.-+.-+.+++=-.. +-.++++|.|||-|++=|.
T Consensus 89 ------------~~~w~~~~~~~lg~~n~~W~ge~~vDi~~~~w~~i~~~rl~~~~~kG~DGvflDnvD~ 146 (309)
T 2aam_A 89 ------------KESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDS 146 (309)
T ss_dssp ------------CTHHHHSCCTTEEEEETTEEEEEEECTTSHHHHHHHHHHHHHHHHTTCSEEEEECTTH
T ss_pred ------------hhccccCCHHHhCccCCCCCCceEEecCCHHHHHHHHHHHHHHHHcCCCeEeecccch
Confidence 01122255555554433333345555555532111 1267789999999998764
No 129
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=51.96 E-value=37 Score=25.48 Aligned_cols=80 Identities=10% Similarity=0.016 Sum_probs=43.6
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~----~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
...+.++.-.... ....+.++++..-.. ..--+++..+.. ....++......++.. ..+++.|+++++.+|-
T Consensus 32 ~~~~~~~a~~~l~-~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~--~~~~~~g~~~~l~KP~ 107 (133)
T 3nhm_A 32 TAADGASGLQQAL-AHPPDVLISDVNMDG-MDGYALCGHFRSEPTLKHIPVIFVSGYAPRTE--GPADQPVPDAYLVKPV 107 (133)
T ss_dssp EESSHHHHHHHHH-HSCCSEEEECSSCSS-SCHHHHHHHHHHSTTTTTCCEEEEESCCC-------TTSCCCSEEEESSC
T ss_pred EECCHHHHHHHHh-cCCCCEEEEeCCCCC-CCHHHHHHHHHhCCccCCCCEEEEeCCCcHhH--HHHhhcCCceEEeccC
Confidence 3455554333222 234677777332111 122234444433 2456777766654443 7899999999999999
Q ss_pred CHHHHHHH
Q 017962 154 DVKAVLAL 161 (363)
Q Consensus 154 d~~ei~~l 161 (363)
+++++.+.
T Consensus 108 ~~~~l~~~ 115 (133)
T 3nhm_A 108 KPPVLIAQ 115 (133)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99887654
No 130
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=51.77 E-value=61 Score=28.45 Aligned_cols=107 Identities=12% Similarity=0.198 Sum_probs=58.7
Q ss_pred CchhHHHHHHHhCccEEEEcccch---------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcc
Q 017962 20 ESKQVMTAAVERGWNTFVFLSENQ---------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQP 90 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~~~---------~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~ 90 (363)
+..+++..+.+.|++.+.+...+. +.++++. ..--|+.+.+| |.++++.+.+..
T Consensus 31 ~~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~--~~~ipvi~~Gg---------------i~~~~~~~~~~~ 93 (241)
T 1qo2_A 31 DPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLS--EFAEHIQIGGG---------------IRSLDYAEKLRK 93 (241)
T ss_dssp CHHHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHHGG--GGGGGEEEESS---------------CCSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEecccccccCCchhHHHHHHHH--hcCCcEEEECC---------------CCCHHHHHHHHH
Confidence 346788999999999988864222 1222222 11113333333 678888777544
Q ss_pred ccCCCceEEEeCCCCeeee----hhhhhhcccCCCceEE--EEcC---------------CHHHHHHHHHHhhcccCeEE
Q 017962 91 ADGQAENIVIDLPDWQVIP----AENIVASFQGSGKTVF--AISK---------------TPSEAQIFLEALEQGLGGIV 149 (363)
Q Consensus 91 ~~~~~~~vvv~~~dW~iIP----lEnliA~~q~~~~~l~--a~v~---------------~~~eA~~~~~~LE~G~dGVv 149 (363)
. .++.+++-.. .++ ++.+ .++. .+++ ..++ +.. +.+..+.+.|++.|+
T Consensus 94 -~-Gad~V~lg~~---~l~~p~~~~~~-~~~g---~~i~~~~d~~~~~v~~~g~~~~~~~~~~--e~~~~~~~~G~~~i~ 162 (241)
T 1qo2_A 94 -L-GYRRQIVSSK---VLEDPSFLKSL-REID---VEPVFSLDTRGGRVAFKGWLAEEEIDPV--SLLKRLKEYGLEEIV 162 (241)
T ss_dssp -T-TCCEEEECHH---HHHCTTHHHHH-HTTT---CEEEEEEEEETTEECCTTCSSCSCCCHH--HHHHHHHTTTCCEEE
T ss_pred -C-CCCEEEECch---HhhChHHHHHH-HHcC---CcEEEEEEecCCEEEECCceecCCCCHH--HHHHHHHhCCCCEEE
Confidence 3 4788888332 222 3334 3332 2332 2231 333 334556789999999
Q ss_pred EecCC
Q 017962 150 LKVED 154 (363)
Q Consensus 150 l~~~d 154 (363)
+++-+
T Consensus 163 ~t~~~ 167 (241)
T 1qo2_A 163 HTEIE 167 (241)
T ss_dssp EEETT
T ss_pred EEeec
Confidence 97743
No 131
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=51.58 E-value=7.9 Score=29.98 Aligned_cols=82 Identities=11% Similarity=0.071 Sum_probs=44.7
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHH
Q 017962 79 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKA 157 (363)
Q Consensus 79 v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~-~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~e 157 (363)
..+.++.-.........+.++++..-..-..--.++..+.. ....++......+. .....+++.|+++++.+|-++++
T Consensus 35 ~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~-~~~~~~~~~g~~~~l~KP~~~~~ 113 (140)
T 3h5i_A 35 ALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEP-AVVEKIRSVTAYGYVMKSATEQV 113 (140)
T ss_dssp ESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSC-CCCGGGGGSCEEEEEETTCCHHH
T ss_pred ecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCH-HHHHHHHhCCCcEEEeCCCCHHH
Confidence 45554433222221346778875431110112223333321 24556665555433 34567889999999999999988
Q ss_pred HHHH
Q 017962 158 VLAL 161 (363)
Q Consensus 158 i~~l 161 (363)
+.+.
T Consensus 114 l~~~ 117 (140)
T 3h5i_A 114 LITI 117 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 132
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=51.27 E-value=12 Score=33.77 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=33.0
Q ss_pred hhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017962 112 NIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 163 (363)
Q Consensus 112 nliA~~q~~~~~l~a-~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~ 163 (363)
.++++++..+-++++ .+++.++++.+ ++.|+|||+ ||+|+.+.++.+
T Consensus 195 ~~v~~~~~~G~~V~~WTvn~~~~~~~l---~~~GVDgIi--TD~P~~~~~~~~ 242 (250)
T 3ks6_A 195 GLMAQVQAAGLDFGCWAAHTPSQITKA---LDLGVKVFT--TDRPTLAIALRT 242 (250)
T ss_dssp HHHHHHHHTTCEEEEECCCSHHHHHHH---HHHTCSEEE--ESCHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEeCCCHHHHHHH---HHcCCCEEE--cCCHHHHHHHHH
Confidence 456666666666655 46777766654 578999998 889998766554
No 133
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=51.22 E-value=39 Score=32.05 Aligned_cols=107 Identities=11% Similarity=0.132 Sum_probs=59.0
Q ss_pred hhHHHHHHHhCccEEEEcccc--hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEE
Q 017962 22 KQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 99 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~--~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vv 99 (363)
.+.+..+++.|++.+.+.-.. .+.++.+.+ .|..+ ...+.+.++...+.. ..+|+++
T Consensus 112 ~~~~~~~~~~g~~~V~~~~g~~~~~~i~~~~~-----------------~g~~v--~~~v~t~~~a~~a~~--~GaD~i~ 170 (369)
T 3bw2_A 112 DAKLAVLLDDPVPVVSFHFGVPDREVIARLRR-----------------AGTLT--LVTATTPEEARAVEA--AGADAVI 170 (369)
T ss_dssp HHHHHHHHHSCCSEEEEESSCCCHHHHHHHHH-----------------TTCEE--EEEESSHHHHHHHHH--TTCSEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHH-----------------CCCeE--EEECCCHHHHHHHHH--cCCCEEE
Confidence 566788888999977765321 233333322 13333 336778776444332 3589999
Q ss_pred EeCCC--C---ee----------eehhhhhhcccC-CCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 017962 100 IDLPD--W---QV----------IPAENIVASFQG-SGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 100 v~~~d--W---~i----------IPlEnliA~~q~-~~~~l~a~--v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
+.... + +. ++.-.++.++.. .+..|++. +.|.+++..+ |+.|+|||.+-+
T Consensus 171 v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~~~~~~---l~~GAd~V~vGs 238 (369)
T 3bw2_A 171 AQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGGQIAAV---LAAGADAAQLGT 238 (369)
T ss_dssp EECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHH---HHTTCSEEEESH
T ss_pred EeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHHHHHHH---HHcCCCEEEECh
Confidence 96531 1 11 332334444321 13345543 4566666554 558999999864
No 134
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=51.05 E-value=24 Score=33.41 Aligned_cols=105 Identities=23% Similarity=0.319 Sum_probs=59.1
Q ss_pred eeeEEEEEEEEEcCCcceE--EEeecC---------CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee----cC
Q 017962 176 SLMKATVTRVDVAGMGDRV--CVDLCS---------LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN----AG 240 (363)
Q Consensus 176 ~L~~atVt~V~~vGmGdRV--CVDtcs---------ll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVN----AG 240 (363)
...+++|++++.+. .|-. .+.... -+.||+=+-|- +........|.-.|||-+- .|
T Consensus 148 ~~~~~~V~~~~~~s-~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~--------~~~~~~~~~~~~~R~ySi~s~p~~~ 218 (399)
T 4g1v_A 148 GWKPFEITAKEYVA-SDIVEFTVKPKFGSGIELESLPITPGQYITVN--------THPIRQENQYDALRHYSLCSASTKN 218 (399)
T ss_dssp SCEEEEEEEEEEEE-TTEEEEEEEECTTSCCCGGGCCCCTTCEEEEE--------ECCCSTTCCSCEEEEEEBSCSCCTT
T ss_pred cceEEEEEEEEEcC-CCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEE--------EeCCCCCCccceeeeecccCCCCCC
Confidence 56788999999885 2332 232211 24455533322 1001001223344555553 24
Q ss_pred CceeEEEe-------cCC-ceeee-eeccCCCeEEEEcCCCCeeEEeeeeEEE-----eccceeEEEEE
Q 017962 241 PVHAYVLV-------PGG-KTCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKI-----ESRPLILVEAK 295 (363)
Q Consensus 241 aVHaYv~~-------pgg-kT~YL-SEL~sG~eVLvVd~~G~~R~~~VGRvKI-----E~RPLllIeAe 295 (363)
.+.=.|.. |+| -|+|| ..|+.||+|.+-...|.-. ..- ..+|++||=+-
T Consensus 219 ~~~i~Vk~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~------l~~~~~~~~~~~~vlIagG 281 (399)
T 4g1v_A 219 GLRFAVKMEAARENFPAGLVSEYLHKDAKVGDEIKLSAPAGDFA------INKELIHQNEVPLVLLSSG 281 (399)
T ss_dssp CEEEEEECCCCBTTBCCCHHHHHHHHTCCTTCEEEEEEEECSCC------CCTTTTTCSSSCEEEEEEG
T ss_pred eEEEEEEeccCCCCCCCCEehhHHHhCCCCCCEEEEEeccccee------eCcccccCCCCCEEEEecc
Confidence 45555665 555 69999 5999999999987777632 111 25789988653
No 135
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=50.90 E-value=13 Score=31.15 Aligned_cols=145 Identities=14% Similarity=0.081 Sum_probs=0.0
Q ss_pred hhHHHHHHHhCccEEEEcc---cchhhhhhccceeeeeeeeecCCccccCCCC-----eeEEEEEecChhhhhhhccccC
Q 017962 22 KQVMTAAVERGWNTFVFLS---ENQQLAIDWSTIALLDPLFIKEGEVYDSGDR-----RVGSIIEVSTPQELQQLQPADG 93 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~---~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk-----~v~~~~~v~~~e~~e~~~~~~~ 93 (363)
.+.+..|++.|++.++..+ +..++...+.+.-....+.+.-+.... ++. ..+......+..+........+
T Consensus 65 ~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~~~~~~~~~d~~~~-~~~~~v~~~~g~~~~~~~~~~~i~~~~~~~ 143 (237)
T 3cwo_X 65 QAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFGSQAVVVAIDAKRV-DGEFMVFTYSGKKNTGILLRDWVVEVEKRG 143 (237)
T ss_dssp HHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHTGGGEEEEEEEEES-SSCEEEEETTTTEEEEEEHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhCCCceEEEeeeccc-CCcEEEEEeCCccccccCHHHHHHHHhhcC
Q ss_pred CCceEEEe--CCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec---CCHHHHHHHHHhhcc
Q 017962 94 QAENIVID--LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKEYFDG 167 (363)
Q Consensus 94 ~~~~vvv~--~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~---~d~~ei~~l~~~~~~ 167 (363)
..+.++.. ..+=..=+.-..|.++......=+-.+........+.+.++.|+||+++-+ ..+-.+.++++++.+
T Consensus 144 ~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~l~~ 222 (237)
T 3cwo_X 144 AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKK 222 (237)
T ss_dssp CSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHHHHT
T ss_pred CCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHHHHH
No 136
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=50.64 E-value=78 Score=23.84 Aligned_cols=67 Identities=18% Similarity=0.086 Sum_probs=40.3
Q ss_pred CCCceEEEeCCCCeeeehhhhhhccc------CCCceEEEEcCCHHHHHHHHHHhhcc-cCeEEEecCCHHHHHHH
Q 017962 93 GQAENIVIDLPDWQVIPAENIVASFQ------GSGKTVFAISKTPSEAQIFLEALEQG-LGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 93 ~~~~~vvv~~~dW~iIPlEnliA~~q------~~~~~l~a~v~~~~eA~~~~~~LE~G-~dGVvl~~~d~~ei~~l 161 (363)
...+.+|++..-.. ..--.++..+. .....++..... .+......+++.| +++++.+|-+++++.+.
T Consensus 59 ~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~~~ii~~t~~-~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~ 132 (146)
T 3ilh_A 59 RWPSIICIDINMPG-INGWELIDLFKQHFQPMKNKSIVCLLSSS-LDPRDQAKAEASDWVDYYVSKPLTANALNNL 132 (146)
T ss_dssp CCCSEEEEESSCSS-SCHHHHHHHHHHHCGGGTTTCEEEEECSS-CCHHHHHHHHHCSSCCEEECSSCCHHHHHHH
T ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHHHhhhhccCCCeEEEEeCC-CChHHHHHHHhcCCcceeeeCCCCHHHHHHH
Confidence 35677888533111 12223333332 234555555444 4445566889999 99999999999887544
No 137
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=50.59 E-value=82 Score=24.09 Aligned_cols=81 Identities=12% Similarity=0.171 Sum_probs=44.7
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 155 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~--~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~ 155 (363)
...+.++.-..... ...+.++++..-. -..--.++..+.. ....++..... .+......+++.|+++.+.+|-++
T Consensus 33 ~~~~~~~a~~~l~~-~~~dlvllD~~l~-~~~g~~l~~~l~~~~~~~~ii~ls~~-~~~~~~~~~~~~ga~~~l~KP~~~ 109 (137)
T 3cfy_A 33 HVETGRDAIQFIER-SKPQLIILDLKLP-DMSGEDVLDWINQNDIPTSVIIATAH-GSVDLAVNLIQKGAEDFLEKPINA 109 (137)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEECSBCS-SSBHHHHHHHHHHTTCCCEEEEEESS-CCHHHHHHHHHTTCSEEEESSCCH
T ss_pred EeCCHHHHHHHHHh-cCCCEEEEecCCC-CCCHHHHHHHHHhcCCCCCEEEEEec-CcHHHHHHHHHCCccEEEeCCCCH
Confidence 35555543332222 2467777732211 0111223333322 34456555443 334566788999999999999999
Q ss_pred HHHHHH
Q 017962 156 KAVLAL 161 (363)
Q Consensus 156 ~ei~~l 161 (363)
+++...
T Consensus 110 ~~L~~~ 115 (137)
T 3cfy_A 110 DRLKTS 115 (137)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 138
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=50.34 E-value=54 Score=24.45 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=37.6
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccCC----CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQGS----GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~~----~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..+.++++..-.. ..--.++..+... ...|+.......+ ....+++.|+++++.+|-+++++.+.
T Consensus 50 ~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~--~~~~~~~~g~~~~l~kP~~~~~l~~~ 118 (132)
T 3lte_A 50 EPAIMTLDLSMPK-LDGLDVIRSLRQNKVANQPKILVVSGLDKA--KLQQAVTEGADDYLEKPFDNDALLDR 118 (132)
T ss_dssp CCSEEEEESCBTT-BCHHHHHHHHHTTTCSSCCEEEEECCSCSH--HHHHHHHHTCCEEECSSCCHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHhcCccCCCeEEEEeCCChH--HHHHHHHhChHHHhhCCCCHHHHHHH
Confidence 4577777433111 1222344444332 2344444333333 56788999999999999999877543
No 139
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=50.23 E-value=27 Score=25.60 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=29.0
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++.. .. .+......+++.|+++++.+|-+++++.+.
T Consensus 80 ~~~ii~~-~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 118 (127)
T 2gkg_A 80 NVPIVII-GN-PDGFAQHRKLKAHADEYVAKPVDADQLVER 118 (127)
T ss_dssp TSCEEEE-EC-GGGHHHHHHSTTCCSEEEESSCCHHHHHHH
T ss_pred CCCEEEE-ec-CCchhHHHHHHhCcchheeCCCCHHHHHHH
Confidence 4566666 33 344566688999999999999999877543
No 140
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=50.08 E-value=38 Score=27.70 Aligned_cols=78 Identities=14% Similarity=0.237 Sum_probs=44.4
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeeh---hhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPA---ENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPl---EnliA~~q--~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
...+.++.-.... ....+.+++ ||.. |- -.++..+. .....++...... +......+++.|+++.+.+|
T Consensus 36 ~~~~~~~al~~~~-~~~~dlvl~---D~~l-p~~~g~~~~~~l~~~~~~~~ii~lt~~~-~~~~~~~a~~~Ga~~~l~KP 109 (184)
T 3rqi_A 36 QAHNKDEALKLAG-AEKFEFITV---XLHL-GNDSGLSLIAPLCDLQPDARILVLTGYA-SIATAVQAVKDGADNYLAKP 109 (184)
T ss_dssp EECSHHHHHHHHT-TSCCSEEEE---CSEE-TTEESHHHHHHHHHHCTTCEEEEEESSC-CHHHHHHHHHHTCSEEEESS
T ss_pred EeCCHHHHHHHHh-hCCCCEEEE---eccC-CCccHHHHHHHHHhcCCCCCEEEEeCCC-CHHHHHHHHHhCHHHheeCC
Confidence 4556554322222 224677777 4442 21 12222222 2345666555443 44566788999999999999
Q ss_pred CCHHHHHHH
Q 017962 153 EDVKAVLAL 161 (363)
Q Consensus 153 ~d~~ei~~l 161 (363)
-+++++.+.
T Consensus 110 ~~~~~L~~~ 118 (184)
T 3rqi_A 110 ANVESILAA 118 (184)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999877543
No 141
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=49.90 E-value=12 Score=33.56 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=64.0
Q ss_pred hhHHHHHHHhCccEEEEccc--chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEE
Q 017962 22 KQVMTAAVERGWNTFVFLSE--NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 99 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~--~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vv 99 (363)
.+.+..|++.|+|.+.|..+ ..+...++-+ .+.+.|+.++..+.-.++. +.+......+|++.
T Consensus 75 ~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~-------------~i~~~g~~~gv~~~p~t~~--e~~~~~~~~~D~v~ 139 (230)
T 1tqj_A 75 EKYVEDFAKAGADIISVHVEHNASPHLHRTLC-------------QIRELGKKAGAVLNPSTPL--DFLEYVLPVCDLIL 139 (230)
T ss_dssp GGTHHHHHHHTCSEEEEECSTTTCTTHHHHHH-------------HHHHTTCEEEEEECTTCCG--GGGTTTGGGCSEEE
T ss_pred HHHHHHHHHcCCCEEEECcccccchhHHHHHH-------------HHHHcCCcEEEEEeCCCcH--HHHHHHHhcCCEEE
Confidence 34679999999999988875 2111111111 1233467777655445553 33444444678886
Q ss_pred EeCC-----CCeeee--hhhhhhcccCC------CceE--EEEcCCHHHHHHHHHHhhcccCeEEEe-----cCCH-HHH
Q 017962 100 IDLP-----DWQVIP--AENIVASFQGS------GKTV--FAISKTPSEAQIFLEALEQGLGGIVLK-----VEDV-KAV 158 (363)
Q Consensus 100 v~~~-----dW~iIP--lEnliA~~q~~------~~~l--~a~v~~~~eA~~~~~~LE~G~dGVvl~-----~~d~-~ei 158 (363)
+-.- .-+.+| ++.| +++... +..| ...++. +. +-.+.+.|+||+++- .+|+ +.+
T Consensus 140 ~msv~pg~ggq~~~~~~~~~i-~~lr~~~~~~~~~~~I~v~GGI~~-~~---~~~~~~aGad~vvvGSai~~a~d~~~~~ 214 (230)
T 1tqj_A 140 IMSVNPGFGGQSFIPEVLPKI-RALRQMCDERGLDPWIEVDGGLKP-NN---TWQVLEAGANAIVAGSAVFNAPNYAEAI 214 (230)
T ss_dssp EESSCC----CCCCGGGHHHH-HHHHHHHHHHTCCCEEEEESSCCT-TT---THHHHHHTCCEEEESHHHHTSSCHHHHH
T ss_pred EEEeccccCCccCcHHHHHHH-HHHHHHHHhcCCCCcEEEECCcCH-HH---HHHHHHcCCCEEEECHHHHCCCCHHHHH
Confidence 6432 322343 3332 222111 2223 233433 33 444567899999985 3466 345
Q ss_pred HHHHHh
Q 017962 159 LALKEY 164 (363)
Q Consensus 159 ~~l~~~ 164 (363)
++|++.
T Consensus 215 ~~l~~~ 220 (230)
T 1tqj_A 215 AGVRNS 220 (230)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 555543
No 142
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=49.86 E-value=43 Score=30.51 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=57.3
Q ss_pred eEEEEEEEEEcCC----cc--eEEEeecC--CCCCCceEEEeccCceEEEEeecccc--CCCCCCCCeeeecCC------
Q 017962 178 MKATVTRVDVAGM----GD--RVCVDLCS--LMRPGEGLLVGSFARGLFLVHSECLE--SNYIASRPFRVNAGP------ 241 (363)
Q Consensus 178 ~~atVt~V~~vGm----Gd--RVCVDtcs--ll~~GEGmLVGs~s~glfLVhsEt~e--~~Yva~RPFRVNAGa------ 241 (363)
..++|++++.+.- +| ++.++.-. -+.||+=+. ++-.... .....+|||-+---|
T Consensus 38 ~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~----------l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~ 107 (314)
T 1fnb_A 38 YVGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVG----------VIPDGEDKNGKPHKLRLYSIASSALGDFGD 107 (314)
T ss_dssp EEEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEE----------EECSSBCTTSSBCCCEEEECCSCSSCTTSS
T ss_pred EEEEEEEEEEecCCCCCCcEEEEEEecCCCCCcCCCCEEE----------EecCCCCcCCCcCCceeEecCCCCcccCCC
Confidence 5689999999975 34 44454322 134444222 2221110 112346777764332
Q ss_pred ---ceeEEEe----------cCC-ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 242 ---VHAYVLV----------PGG-KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 242 ---VHaYv~~----------pgg-kT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
++=.|.. ++| -|+||++|+.||.|.+-...|+.-... .-..+|++||=+
T Consensus 108 ~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIag 170 (314)
T 1fnb_A 108 AKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMP----KDPNATIIMLGT 170 (314)
T ss_dssp SCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTCEEEEEEEECSTTCCB----SCTTCEEEEEEE
T ss_pred CCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCCEEEEEeccCCceeCC----CCCCCCEEEEeC
Confidence 3322332 444 499999999999999987777542110 012578888755
No 143
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=49.71 E-value=17 Score=32.13 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=55.4
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhh-hhhhccccCCCc-eEE
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE-LQQLQPADGQAE-NIV 99 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~-~e~~~~~~~~~~-~vv 99 (363)
.+.+..|++.|+|.++++....+..+++-+. .+..|..+...+...++.+ ++.+.. .++ ++.
T Consensus 98 ~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~i~~~t~~e~~~~~~~---~~d~~i~ 161 (248)
T 1geq_A 98 RNFLAEAKASGVDGILVVDLPVFHAKEFTEI-------------AREEGIKTVFLAAPNTPDERLKVIDD---MTTGFVY 161 (248)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGHHHHHHH-------------HHHHTCEEEEEECTTCCHHHHHHHHH---HCSSEEE
T ss_pred HHHHHHHHHCCCCEEEECCCChhhHHHHHHH-------------HHHhCCCeEEEECCCCHHHHHHHHHh---cCCCeEE
Confidence 5899999999999999986432222222111 0111233333222323332 222222 234 543
Q ss_pred EeCC----CCe--eeeh-hhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 100 IDLP----DWQ--VIPA-ENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 100 v~~~----dW~--iIPl-EnliA~~q~~-~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
+-.. +-+ ..|. .+.++++... +..|++ .+++.++++.++ +.|+|||++-+.
T Consensus 162 ~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~---~~Gad~vivGsa 222 (248)
T 1geq_A 162 LVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLL---KEGANGVVVGSA 222 (248)
T ss_dssp EECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH---HTTCSEEEECHH
T ss_pred EEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHH---HcCCCEEEEcHH
Confidence 3221 111 2231 2344444321 234444 567778877654 579999998763
No 144
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=49.27 E-value=38 Score=31.11 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=56.9
Q ss_pred eeEEEEEEEEEcCCcc-eEEEeecC-----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee----cCCceeEE
Q 017962 177 LMKATVTRVDVAGMGD-RVCVDLCS-----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN----AGPVHAYV 246 (363)
Q Consensus 177 L~~atVt~V~~vGmGd-RVCVDtcs-----ll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVN----AGaVHaYv 246 (363)
-.+++|++++.+.-.= ++.+..-. -+.||+=+.+- ... . -..|||-+- .|-+.=.+
T Consensus 108 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~---------~~~----~-~~~R~ySi~s~~~~~~l~~~v 173 (338)
T 1krh_A 108 HFEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVT---------LPG----T-TETRSYSFSSQPGNRLTGFVV 173 (338)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEE---------CTT----S-SCEEEEECCSCTTCSEEEEEE
T ss_pred EEEEEEEEEEEcCCCEEEEEEEeCCCCCCCCcCCCCeEEEE---------cCC----C-CccccccccCCCCCCeEEEEE
Confidence 3578999998886532 33444322 24555533221 111 0 123555442 34344445
Q ss_pred Ee-cCC-ceeee-eeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 247 LV-PGG-KTCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 247 ~~-pgg-kT~YL-SEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
.. |+| -|+|| +.|+.||+|.+-...|+... .-..+|++||=+
T Consensus 174 k~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~~------~~~~~~~vliag 218 (338)
T 1krh_A 174 RNVPQGKMSEYLSVQAKAGDKMSFTGPFGSFYL------RDVKRPVLMLAG 218 (338)
T ss_dssp ECCTTCHHHHHHHTTCCTTCEEEEEEEECSCSC------CCCSSCEEEEEE
T ss_pred EEcCCCCchhhHhhccCCCCEEEEECCccceEe------CCCCceEEEEEc
Confidence 44 544 59999 69999999999888887532 112488888855
No 145
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=49.23 E-value=63 Score=27.78 Aligned_cols=81 Identities=10% Similarity=0.107 Sum_probs=46.3
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 155 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~--~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~ 155 (363)
...+.++.-..... ...+.++++..-.. ..--.++..+.. ....++...... +......+++.|+|+.+.+|-++
T Consensus 52 ~~~~~~~al~~~~~-~~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~~ii~lt~~~-~~~~~~~~~~~Ga~~yl~Kp~~~ 128 (250)
T 3r0j_A 52 TATNGAQALDRARE-TRPDAVILDVXMPG-MDGFGVLRRLRADGIDAPALFLTARD-SLQDKIAGLTLGGDDYVTKPFSL 128 (250)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESCCSS-SCHHHHHHHHHHTTCCCCEEEEECST-THHHHHHHHTSTTCEEEESSCCH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCCEEEEECCC-CHHHHHHHHHcCCcEEEeCCCCH
Confidence 45565553332222 24677888533111 112234444432 244566554433 44556788999999999999999
Q ss_pred HHHHHH
Q 017962 156 KAVLAL 161 (363)
Q Consensus 156 ~ei~~l 161 (363)
+++.+.
T Consensus 129 ~~L~~~ 134 (250)
T 3r0j_A 129 EEVVAR 134 (250)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887644
No 146
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=49.19 E-value=48 Score=29.03 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=58.7
Q ss_pred chhHHHHHHHhCccEEEEcccch---------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQ---------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 91 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~---------~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~ 91 (363)
-.+++..+.+.|++.+.+...+. +..+++.+-. --|+.+.+| |.++++.+.+...
T Consensus 32 ~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~-~ipvi~~gg---------------I~~~~~~~~~~~~ 95 (253)
T 1thf_D 32 PVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQI-DIPFTVGGG---------------IHDFETASELILR 95 (253)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTC-CSCEEEESS---------------CCSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEECCchhhcCCcccHHHHHHHHHhC-CCCEEEeCC---------------CCCHHHHHHHHHc
Confidence 35778888899999877654321 1122222210 013333322 6788887776542
Q ss_pred cCCCceEEEeCCCCee-eehhhhhhcccCCCceEEEEcC-----------CH------HHHHHHHHHhhcccCeEEEecC
Q 017962 92 DGQAENIVIDLPDWQV-IPAENIVASFQGSGKTVFAISK-----------TP------SEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 92 ~~~~~~vvv~~~dW~i-IPlEnliA~~q~~~~~l~a~v~-----------~~------~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
.++.|++.....+- --++.++..+......+-..++ .. .-.+.+..+++.|++.|++++-
T Consensus 96 --Gad~V~lg~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~ 173 (253)
T 1thf_D 96 --GADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSI 173 (253)
T ss_dssp --TCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEET
T ss_pred --CCCEEEEChHHHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCCCCEEEEEec
Confidence 48888884431111 0145555554211111222221 11 1233445566789999999753
No 147
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=48.95 E-value=44 Score=26.17 Aligned_cols=71 Identities=15% Similarity=0.110 Sum_probs=41.3
Q ss_pred eeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecc-eEEEecCCCCCCCCCceee
Q 017962 253 TCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAE-TVALVSPCKGTGEQEKAIP 331 (363)
Q Consensus 253 T~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sviLQnAE-TIrLv~p~~~~~~~g~~vs 331 (363)
+..+++|++|+.|- ++|||. +..|..-+.-+.. ..++..++.++|.- +||++-=+. ....
T Consensus 2 ~~kI~dl~~g~~v~-----------i~~~V~-~~~~~r~~~~~~G-~~~~v~~~~l~DeTG~I~~tlW~~-----~~~~- 62 (97)
T 3e0e_A 2 NYKISELMPNLSGT-----------INAEVV-TAYPKKEFSRKDG-TKGQLKSLFLKDDTGSIRGTLWNE-----LADF- 62 (97)
T ss_dssp EECGGGCCTTEEEE-----------EEEEEE-EECCCEEEC-----CCEEEEEEEEEETTEEEEEEEEGG-----GGGC-
T ss_pred CeEHHHCCCCCcEE-----------EEEEEE-ECCCceEEEcCCC-CeeEEEEEEEECCCCcEEEEEECC-----cccc-
Confidence 45689999885443 445553 4444433322221 12567789998865 688874431 1111
Q ss_pred eeecCCCCEEEEE
Q 017962 332 VTSLKVGDEVLLR 344 (363)
Q Consensus 332 Vt~Lk~GD~VL~~ 344 (363)
+|++||.|.+.
T Consensus 63 --~i~~Gdvv~i~ 73 (97)
T 3e0e_A 63 --EVKKGDIAEVS 73 (97)
T ss_dssp --CCCTTCEEEEE
T ss_pred --ccCCCCEEEEE
Confidence 89999999874
No 148
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=48.72 E-value=1.3e+02 Score=27.74 Aligned_cols=126 Identities=13% Similarity=0.159 Sum_probs=71.9
Q ss_pred eeeeEEEEEEEEEcCCcce---EEEeecCCCCCCceEEEeccCce-EEEEeeccccCCCCCCCCeeeecCCceeEEEecC
Q 017962 175 LSLMKATVTRVDVAGMGDR---VCVDLCSLMRPGEGLLVGSFARG-LFLVHSECLESNYIASRPFRVNAGPVHAYVLVPG 250 (363)
Q Consensus 175 l~L~~atVt~V~~vGmGdR---VCVDtcsll~~GEGmLVGs~s~g-lfLVhsEt~e~~Yva~RPFRVNAGaVHaYv~~pg 250 (363)
+++...+|.+--+++-+.. +++| |.=+.+.+.-.+ .|.+..+|.+- ++ ++..|.-+.+-+.|+
T Consensus 49 iD~~tg~v~~~i~l~~~~fgeGi~~~-------g~~lyv~t~~~~~v~viD~~t~~v--~~----~i~~g~~~g~glt~D 115 (266)
T 2iwa_A 49 VALQTGKVENIHKMDDSYFGEGLTLL-------NEKLYQVVWLKNIGFIYDRRTLSN--IK----NFTHQMKDGWGLATD 115 (266)
T ss_dssp EETTTCCEEEEEECCTTCCEEEEEEE-------TTEEEEEETTCSEEEEEETTTTEE--EE----EEECCSSSCCEEEEC
T ss_pred EECCCCCEEEEEecCCCcceEEEEEe-------CCEEEEEEecCCEEEEEECCCCcE--EE----EEECCCCCeEEEEEC
Confidence 4555555665555543222 3333 223455554433 44444454321 11 233442345778899
Q ss_pred CceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEec--cce-eEEEEEecCCCCeEEEEEeEecceEEEecCCC
Q 017962 251 GKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIES--RPL-ILVEAKTNSGDQTLYGIILQNAETVALVSPCK 321 (363)
Q Consensus 251 gkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~--RPL-llIeAe~~~~~g~~~sviLQnAETIrLv~p~~ 321 (363)
|+.-|.|. . .+.|.++|.+... .++++++-. ||+ .+=|.+.. +|+.+ +=.....+|..+.+..
T Consensus 116 g~~l~vs~-g-s~~l~viD~~t~~---v~~~I~Vg~~~~p~~~~nele~~--dg~ly-vn~~~~~~V~vID~~t 181 (266)
T 2iwa_A 116 GKILYGSD-G-TSILYEIDPHTFK---LIKKHNVKYNGHRVIRLNELEYI--NGEVW-ANIWQTDCIARISAKD 181 (266)
T ss_dssp SSSEEEEC-S-SSEEEEECTTTCC---EEEEEECEETTEECCCEEEEEEE--TTEEE-EEETTSSEEEEEETTT
T ss_pred CCEEEEEC-C-CCeEEEEECCCCc---EEEEEEECCCCcccccceeEEEE--CCEEE-EecCCCCeEEEEECCC
Confidence 99999998 4 5699999987643 345666654 565 34455554 56644 3334466899998873
No 149
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=48.69 E-value=17 Score=26.68 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=28.5
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++......+ ......+++.|+++.+.+|-+++++...
T Consensus 72 ~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~Kp~~~~~l~~~ 111 (121)
T 1zh2_A 72 AVPVIVLSARSE-ESDKIAALDAGADDYLSKPFGIGELQAR 111 (121)
T ss_dssp CCCEEEEESCCS-HHHHHHHHHHTCSEEEESSCCHHHHHHH
T ss_pred CCcEEEEECCCC-HHHHHHHHhcCCCeEEeCCcCHHHHHHH
Confidence 345555544433 3455678899999999999999887543
No 150
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=47.89 E-value=41 Score=31.49 Aligned_cols=107 Identities=10% Similarity=0.066 Sum_probs=59.8
Q ss_pred hhHHHHHHHhCccEEEEcccc-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEE
Q 017962 22 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~-~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 100 (363)
.+.+..|++.|+|.+.+...+ .+..+.+. +.|.+ +++.+.+.++...+.. ..+|++++
T Consensus 78 ~~~~~~a~~~g~d~V~~~~g~p~~~i~~l~-----------------~~g~~--v~~~v~~~~~a~~~~~--~GaD~i~v 136 (332)
T 2z6i_A 78 EDIVDLVIEEGVKVVTTGAGNPSKYMERFH-----------------EAGII--VIPVVPSVALAKRMEK--IGADAVIA 136 (332)
T ss_dssp HHHHHHHHHTTCSEEEECSSCGGGTHHHHH-----------------HTTCE--EEEEESSHHHHHHHHH--TTCSCEEE
T ss_pred HHHHHHHHHCCCCEEEECCCChHHHHHHHH-----------------HcCCe--EEEEeCCHHHHHHHHH--cCCCEEEE
Confidence 578889999999998886532 12222111 11333 3346788877554433 24899999
Q ss_pred eCC--CCe--eeehhhhhhcccC-CCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 017962 101 DLP--DWQ--VIPAENIVASFQG-SGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 101 ~~~--dW~--iIPlEnliA~~q~-~~~~l~a~--v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
.+. +.. -.|.-.++.++.. .+..+++. ++|.+++..++ +.|+|||.+-+
T Consensus 137 ~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al---~~GAdgV~vGs 192 (332)
T 2z6i_A 137 EGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGF---MLGAEAVQVGT 192 (332)
T ss_dssp ECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHH---HTTCSEEEECH
T ss_pred ECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH---HcCCCEEEecH
Confidence 653 211 1222234443321 13345543 56676665554 47999999864
No 151
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=47.80 E-value=36 Score=32.21 Aligned_cols=41 Identities=20% Similarity=0.067 Sum_probs=34.5
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
.+|...+.|.+||+.+ ++.|+|.|+|.+=++.++++..+.+
T Consensus 197 ~~IgVev~t~eea~eA---~~aGaD~I~ld~~~~~~~k~av~~v 237 (286)
T 1x1o_A 197 LKVEVEVRSLEELEEA---LEAGADLILLDNFPLEALREAVRRV 237 (286)
T ss_dssp SCEEEEESSHHHHHHH---HHHTCSEEEEESCCHHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4788999999998765 4679999999999999988776655
No 152
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=47.77 E-value=23 Score=30.77 Aligned_cols=51 Identities=27% Similarity=0.398 Sum_probs=33.8
Q ss_pred CCceeEEEe-c-CCceeeeeeccCCCeEEEE-cCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 240 GPVHAYVLV-P-GGKTCYLSELKSGKEVIVV-DQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 240 GaVHaYv~~-p-ggkT~YLSEL~sG~eVLvV-d~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
|-+.=|+.. | |.-|+||..|+.||+|.+- ...|... .-.. -..+|++||=+
T Consensus 61 ~~l~~~v~~~~~G~~s~~l~~l~~Gd~v~v~~gP~G~f~---l~~~-~~~~~~vliag 114 (248)
T 1fdr_A 61 PDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFV---LDEV-PHCETLWMLAT 114 (248)
T ss_dssp SSEEEEEECCTTCSSHHHHHTCCTTCEEEEESSCBCCCS---GGGS-CCCSEEEEEEE
T ss_pred CcEEEEEEEeCCCchhhHHHhCCCcCEEEEecCCcceeE---cCCC-CCCceEEEEEe
Confidence 555556654 5 5578999999999999998 6777631 0000 01578888755
No 153
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=47.56 E-value=41 Score=25.84 Aligned_cols=67 Identities=13% Similarity=0.211 Sum_probs=39.9
Q ss_pred CCCceEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 93 GQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 93 ~~~~~vvv~~~dW~iIPlEnliA~~q--~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...+.+|++..-.. ..--.++..+. .....++..... .+......+++.|+++++.+|-+++++...
T Consensus 66 ~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~ii~lt~~-~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~ 134 (146)
T 4dad_A 66 DAFDILMIDGAALD-TAELAAIEKLSRLHPGLTCLLVTTD-ASSQTLLDAMRAGVRDVLRWPLEPRALDDA 134 (146)
T ss_dssp TTCSEEEEECTTCC-HHHHHHHHHHHHHCTTCEEEEEESC-CCHHHHHHHHTTTEEEEEESSCCHHHHHHH
T ss_pred CCCCEEEEeCCCCC-ccHHHHHHHHHHhCCCCcEEEEeCC-CCHHHHHHHHHhCCceeEcCCCCHHHHHHH
Confidence 45677887443111 11112232222 234556655443 344567788999999999999999887654
No 154
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=47.49 E-value=18 Score=27.24 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=26.7
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 160 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~ 160 (363)
+..++...... +......+++.|+++.+.+|-+++++..
T Consensus 73 ~~~ii~~t~~~-~~~~~~~~~~~ga~~~l~KP~~~~~l~~ 111 (120)
T 3f6p_A 73 DMPIIMLTAKD-SEIDKVIGLEIGADDYVTKPFSTRELLA 111 (120)
T ss_dssp CSCEEEEEESS-CHHHHHHHHHTTCCEEEEESCCHHHHHH
T ss_pred CCCEEEEECCC-ChHHHHHHHhCCcceeEcCCCCHHHHHH
Confidence 34455444333 2334557889999999999999987754
No 155
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=47.45 E-value=92 Score=24.11 Aligned_cols=80 Identities=9% Similarity=0.083 Sum_probs=45.5
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017962 79 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 156 (363)
Q Consensus 79 v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q--~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ 156 (363)
..+.++.-..... ...+.++++..-.. ..--.++..+. .....++..... .+......+++.|+++++.+|-+++
T Consensus 33 ~~~~~~a~~~l~~-~~~dliild~~l~~-~~g~~~~~~l~~~~~~~pii~ls~~-~~~~~~~~~~~~g~~~~l~kP~~~~ 109 (155)
T 1qkk_A 33 FASATEALAGLSA-DFAGIVISDIRMPG-MDGLALFRKILALDPDLPMILVTGH-GDIPMAVQAIQDGAYDFIAKPFAAD 109 (155)
T ss_dssp ESCHHHHHHTCCT-TCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSCEEEEECG-GGHHHHHHHHHTTCCEEEESSCCHH
T ss_pred ECCHHHHHHHHHh-CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEEEEECC-CChHHHHHHHhcCCCeEEeCCCCHH
Confidence 4555543332222 24677777543211 22222333332 234566665544 3456677889999999999999998
Q ss_pred HHHHH
Q 017962 157 AVLAL 161 (363)
Q Consensus 157 ei~~l 161 (363)
++...
T Consensus 110 ~L~~~ 114 (155)
T 1qkk_A 110 RLVQS 114 (155)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87544
No 156
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=47.44 E-value=46 Score=30.41 Aligned_cols=128 Identities=15% Similarity=0.092 Sum_probs=65.9
Q ss_pred CchhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCC---------CCeeEEEEEecChhhhhhhcc
Q 017962 20 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSG---------DRRVGSIIEVSTPQELQQLQP 90 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~---------gk~v~~~~~v~~~e~~e~~~~ 90 (363)
.....+..+.+.|+|.+.|..+.-+.....- +.+.+. |+.+++.+.-.++. +.+..
T Consensus 80 ~p~~~i~~~~~aGAd~itvH~ea~~~~~~~i-------------~~i~~~~~~~~~~~~g~~~gv~l~p~Tp~--~~l~~ 144 (237)
T 3cu2_A 80 NQLEVAKAVVANGANLVTLQLEQYHDFALTI-------------EWLAKQKTTYANQVYPVLIGACLCPETPI--SELEP 144 (237)
T ss_dssp CHHHHHHHHHHTTCSEEEEETTCTTSHHHHH-------------HHHTTCEEEETTEEEECEEEEEECTTSCG--GGGTT
T ss_pred CHHHHHHHHHHcCCCEEEEecCCcccHHHHH-------------HHHHhcccccccccCCceEEEEEeCCChH--HHHHH
Confidence 3467789999999999888764221111100 112233 56666654334443 44445
Q ss_pred ccCCCceEEE---e--CCCCeeee--hhhh---hhcccCCC-ceEEEEcCCHHHHHHHHHHhh--cccCeEEEecC----
Q 017962 91 ADGQAENIVI---D--LPDWQVIP--AENI---VASFQGSG-KTVFAISKTPSEAQIFLEALE--QGLGGIVLKVE---- 153 (363)
Q Consensus 91 ~~~~~~~vvv---~--~~dW~iIP--lEnl---iA~~q~~~-~~l~a~v~~~~eA~~~~~~LE--~G~dGVvl~~~---- 153 (363)
.....|++.+ + |..-+.+| ++.| -+.....+ .-.+.+-.... .+.+-.+.+ .|+|+++.-+.
T Consensus 145 ~l~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~~~~aGad~~VvGSaIf~~ 223 (237)
T 3cu2_A 145 YLDQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFKQGTHQIDWLVSGSALFSG 223 (237)
T ss_dssp TTTTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHHHSSSCCCCEEECGGGGSS
T ss_pred HhhcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHhCCCCcEEEEeeHHhCC
Confidence 5556888877 2 23334454 4432 12211110 12333333322 344555678 89999998643
Q ss_pred CHH-HHHHHHH
Q 017962 154 DVK-AVLALKE 163 (363)
Q Consensus 154 d~~-ei~~l~~ 163 (363)
|+. .+++|++
T Consensus 224 d~~~~~~~l~~ 234 (237)
T 3cu2_A 224 ELKTNLKVWKS 234 (237)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 653 3444443
No 157
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=47.32 E-value=50 Score=28.29 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=14.6
Q ss_pred hHHHHHHHhCccEEEEcc
Q 017962 23 QVMTAAVERGWNTFVFLS 40 (363)
Q Consensus 23 ~~vt~AlEsG~~~~v~~~ 40 (363)
+.+..+++.|+|.+.+..
T Consensus 75 ~~i~~~~~~gad~v~vh~ 92 (220)
T 2fli_A 75 RYVEAFAQAGADIMTIHT 92 (220)
T ss_dssp GGHHHHHHHTCSEEEEEG
T ss_pred HHHHHHHHcCCCEEEEcc
Confidence 356999999999998854
No 158
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=47.23 E-value=41 Score=30.35 Aligned_cols=108 Identities=15% Similarity=0.018 Sum_probs=59.3
Q ss_pred chhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEE
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 100 (363)
-.+++.++++.|++.+=++..+..-.+.+..++.- ++ +..+++ ..+.+.++.+.+.. . .+++++.
T Consensus 40 ~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~----------~~--~~~iga-gtvl~~d~~~~A~~-a-GAd~v~~ 104 (225)
T 1mxs_A 40 ILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQ----------RP--ELCVGA-GTVLDRSMFAAVEA-A-GAQFVVT 104 (225)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHH----------CT--TSEEEE-ECCCSHHHHHHHHH-H-TCSSEEC
T ss_pred HHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHh----------Cc--ccEEee-CeEeeHHHHHHHHH-C-CCCEEEe
Confidence 35688999999999888775332111111111110 00 122222 12456666444332 3 5788876
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 101 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 101 ~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
-..| .|+-..-. ..+..++..+.|++|+.. +++.|+|-|-+-|
T Consensus 105 p~~d---~~v~~~~~---~~g~~~i~G~~t~~e~~~---A~~~Gad~vk~FP 147 (225)
T 1mxs_A 105 PGIT---EDILEAGV---DSEIPLLPGISTPSEIMM---GYALGYRRFKLFP 147 (225)
T ss_dssp SSCC---HHHHHHHH---HCSSCEECEECSHHHHHH---HHTTTCCEEEETT
T ss_pred CCCC---HHHHHHHH---HhCCCEEEeeCCHHHHHH---HHHCCCCEEEEcc
Confidence 4333 22222222 233455656999999754 5689999998877
No 159
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=47.07 E-value=23 Score=32.81 Aligned_cols=126 Identities=12% Similarity=0.188 Sum_probs=66.4
Q ss_pred hhHHHHHHHhCccEEEEcccch-hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEE
Q 017962 22 KQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~-~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 100 (363)
...+..+.+.|+|.+-|..+.- ...+.+ +.+++.|.+.++.+.-.+ .++.+...+...|+|++
T Consensus 99 ~~~i~~~~~aGAd~itvH~Ea~~~~~~~i--------------~~ir~~G~k~Gvalnp~T--p~e~l~~~l~~vD~Vlv 162 (246)
T 3inp_A 99 DALIESFAKAGATSIVFHPEASEHIDRSL--------------QLIKSFGIQAGLALNPAT--GIDCLKYVESNIDRVLI 162 (246)
T ss_dssp HHHHHHHHHHTCSEEEECGGGCSCHHHHH--------------HHHHTTTSEEEEEECTTC--CSGGGTTTGGGCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEccccchhHHHHH--------------HHHHHcCCeEEEEecCCC--CHHHHHHHHhcCCEEEE
Confidence 4578889999999998876421 111111 112345677666433223 23444444445788876
Q ss_pred eC-----CCCeeee--hhhh---hhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe-----cCCH-HHHHHHH
Q 017962 101 DL-----PDWQVIP--AENI---VASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK-----VEDV-KAVLALK 162 (363)
Q Consensus 101 ~~-----~dW~iIP--lEnl---iA~~q--~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~-----~~d~-~ei~~l~ 162 (363)
-+ .+-+.|| ++.| -+.+. +.+ -.+.+-.-.. .+.+-.+.+.|+|.+|.- .+|+ +.+++++
T Consensus 163 MsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~-~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~a~dp~~~i~~l~ 240 (246)
T 3inp_A 163 MSVNPGFGGQKFIPAMLDKAKEISKWISSTDRD-ILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMR 240 (246)
T ss_dssp ECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSC-CEEEEESSCC-TTTHHHHHTTTCCEEEESHHHHTSSCHHHHHHHHH
T ss_pred eeecCCCCCcccchHHHHHHHHHHHHHHhcCCC-eeEEEECCcC-HHHHHHHHHcCCCEEEEehHHhCCCCHHHHHHHHH
Confidence 32 3444566 3332 11111 111 1233322222 235667899999999974 4677 4466666
Q ss_pred Hhh
Q 017962 163 EYF 165 (363)
Q Consensus 163 ~~~ 165 (363)
+.+
T Consensus 241 ~~i 243 (246)
T 3inp_A 241 DEL 243 (246)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 160
>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A
Probab=46.97 E-value=9.7 Score=35.04 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=27.0
Q ss_pred cCCCCCCCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEc
Q 017962 226 ESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVD 269 (363)
Q Consensus 226 e~~Yva~RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd 269 (363)
+..|++..+|+|++. +--|-. | ....-.++|..|+.|.|.+
T Consensus 9 ~~~~~~~~~~~v~~~-~~l~~~-p-~~~~~~tq~l~Ge~~~Vl~ 49 (235)
T 2hbw_A 9 SIQSPKSGEYQCLAA-LNLYDS-P-ECTSLATQAAVGRHLQVTS 49 (235)
T ss_dssp -------CEEEESSC-EEEESS-T-TCCSEEEEECTTCEEEEEE
T ss_pred cccccCCeeEEEecC-cccccC-C-CCccceeeecCCCEEEEEE
Confidence 356899999999996 776755 5 3455679999999999983
No 161
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*
Probab=46.47 E-value=20 Score=32.43 Aligned_cols=30 Identities=13% Similarity=0.349 Sum_probs=25.7
Q ss_pred CcEEEEEe-CchhHHHHHHHhCccEEEEccc
Q 017962 12 PKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 41 (363)
Q Consensus 12 ~K~vWvw~-~~K~~vt~AlEsG~~~~v~~~~ 41 (363)
.|.|++|| .+++.|...++.|+|+|+.+..
T Consensus 224 g~~V~~WTvn~~~~~~~l~~~GVDgIiTD~P 254 (285)
T 1xx1_A 224 INKIYYWSVDKVSTTKAALDVGVDGIMTNYP 254 (285)
T ss_dssp CCEEEEECCCSHHHHHHHHHHTCSEEEESCH
T ss_pred CCeEEEeeCCCHHHHHHHHhcCCCEEEeCCH
Confidence 34899999 6788999999999999998653
No 162
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=46.42 E-value=48 Score=31.90 Aligned_cols=115 Identities=10% Similarity=0.100 Sum_probs=62.7
Q ss_pred CchhHHHHHHHhCccEEEEcc--cchh-hhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCc
Q 017962 20 ESKQVMTAAVERGWNTFVFLS--ENQQ-LAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 96 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~--~~~~-~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~ 96 (363)
+..+.+..+++.|+|.+.+.. .+.+ ..+.+..+... .+ +.++.+ ..+.+.++.+.+.. ..++
T Consensus 153 ~~~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~----------~~--~~pviv-~~v~~~~~a~~a~~--~Gad 217 (404)
T 1eep_A 153 DTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTK----------YP--NLDLIA-GNIVTKEAALDLIS--VGAD 217 (404)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHH----------CT--TCEEEE-EEECSHHHHHHHHT--TTCS
T ss_pred hHHHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHH----------CC--CCeEEE-cCCCcHHHHHHHHh--cCCC
Confidence 346677888999999988632 1111 11111111000 00 222221 25777777555443 3589
Q ss_pred eEEEeC-----------CCCeeee----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 97 NIVIDL-----------PDWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 97 ~vvv~~-----------~dW~iIP----lEnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
.+++.. .+|. .| +..+...++..+..|++ .+.+.+++..++. .|+|+|.+-+.
T Consensus 218 ~I~vg~~~G~~~~~~~~~~~g-~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala---~GAd~V~iG~~ 287 (404)
T 1eep_A 218 CLKVGIGPGSICTTRIVAGVG-VPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIA---AGADSVMIGNL 287 (404)
T ss_dssp EEEECSSCSTTSHHHHHHCCC-CCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHH---HTCSEEEECHH
T ss_pred EEEECCCCCcCcCccccCCCC-cchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHH---cCCCHHhhCHH
Confidence 998821 2342 23 22333322334567888 6788888877664 59999998653
No 163
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=46.20 E-value=14 Score=31.16 Aligned_cols=70 Identities=21% Similarity=0.283 Sum_probs=48.3
Q ss_pred eEEEEeecccc-CCCCCCCC-eeeecCCceeE----EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccce
Q 017962 216 GLFLVHSECLE-SNYIASRP-FRVNAGPVHAY----VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 289 (363)
Q Consensus 216 glfLVhsEt~e-~~Yva~RP-FRVNAGaVHaY----v~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPL 289 (363)
+.|.-+=++.. .|| ++| ..|+.||+.+. =++|-|=+..=.+++.||.|.|++.+|+ ..-+|++..-..-|
T Consensus 54 g~~~ptl~~l~~l~~--~~~~v~vd~ga~~~l~~Ga~ll~~GV~~~~~~~~~gd~V~V~~~~g~--~ia~G~~~~ss~e~ 129 (153)
T 1q7h_A 54 GDLIPSVYLLNYRNP--SRNIVTVDEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIFVKSSKGY--FIAVGMAEMDAGEV 129 (153)
T ss_dssp SSEEECHHHHHHSCC--SSSEEEECTTTHHHHTTTCCEEGGGEEEECTTCCTTCEEEEEETTSC--EEEEEEESSCHHHH
T ss_pred CeeeeehHHHhhCCc--cCCEEEECHhHHHHHHcCCCcCccccCcccCceeCCCEEEEEECCCC--EEEEEEEecCHHHH
Confidence 34444444432 233 333 78999998765 4556677888789999999999999774 47888887654433
No 164
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=45.98 E-value=33 Score=33.65 Aligned_cols=119 Identities=17% Similarity=0.137 Sum_probs=64.6
Q ss_pred CchhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEE
Q 017962 20 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 99 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vv 99 (363)
..++.+..+++.|+|.+++.........-|..+..+.- .++ +..+. -..+.+.++...+.. ..++.+.
T Consensus 233 ~~~~~a~~l~~~G~d~ivi~~a~g~~~~~~~~i~~l~~-------~~p--~~pvi-~G~v~t~~~a~~~~~--~Gad~I~ 300 (491)
T 1zfj_A 233 DTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRA-------HFP--NRTLI-AGNIATAEGARALYD--AGVDVVK 300 (491)
T ss_dssp THHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHH-------HCS--SSCEE-EEEECSHHHHHHHHH--TTCSEEE
T ss_pred hHHHHHHHHHHcCCCeEEEeeecCcchhHHHHHHHHHH-------HCC--CCcEe-CCCccCHHHHHHHHH--cCCCEEE
Confidence 45788899999999999987532111111111111110 000 11111 335677766554432 3467777
Q ss_pred EeC-----------CCCeeeehhh---hhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 100 IDL-----------PDWQVIPAEN---IVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 100 v~~-----------~dW~iIPlEn---liA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
+.. .+|..-.++. +.++.+..+..|++ .+.+.+|+..++ ..|+|+|++-+-
T Consensus 301 vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal---~~GA~~v~vG~~ 367 (491)
T 1zfj_A 301 VGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKAL---AAGGNAVMLGSM 367 (491)
T ss_dssp ECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHH---HTTCSEEEESTT
T ss_pred ECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHH---HcCCcceeeCHH
Confidence 731 2454322333 33322234567888 678999887766 469999998553
No 165
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=45.49 E-value=27 Score=30.51 Aligned_cols=104 Identities=15% Similarity=0.052 Sum_probs=56.2
Q ss_pred eeeeeeecCCccccC-CCCeeEEEEEecChhhhhhhccccCCCceEEEeCCCC---eeeehhhhhhcccC-CCceEEE--
Q 017962 54 LLDPLFIKEGEVYDS-GDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW---QVIPAENIVASFQG-SGKTVFA-- 126 (363)
Q Consensus 54 ~i~~l~~~~g~~~~~-~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW---~iIPlEnliA~~q~-~~~~l~a-- 126 (363)
+|..|.+.+|..+.. +|+. ..+....++.++-+.... ..++++-+...|. ...+. .++.++.. .+..++.
T Consensus 5 iip~id~~~g~~V~~~~g~~-~~~~~~~d~~~~a~~~~~-~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~g 81 (244)
T 2y88_A 5 LLPAVNVVEGRAVRLVQGKA-GSQTEYGSAVDAALGWQR-DGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVELSG 81 (244)
T ss_dssp EEEEEEEETTEEEEEETTEE-EEEEEEEEHHHHHHHHHH-TTCSEEEEEEHHHHTTSCCCH-HHHHHHHHHCSSEEEEES
T ss_pred EEEEEEeECCEEEEeecccc-ccceecCCHHHHHHHHHH-cCCCEEEEEcCcccccCCChH-HHHHHHHHhcCCcEEEEC
Confidence 344577788877653 2322 222223355444333322 3578888865432 22344 55555432 2334444
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHH
Q 017962 127 ISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKE 163 (363)
Q Consensus 127 ~v~~~~eA~~~~~~LE~G~dGVvl~~~---d~~ei~~l~~ 163 (363)
-+.|+++++.+ ++.|+|+|++.+. +|..+.++.+
T Consensus 82 gi~~~~~~~~~---l~~Gad~V~lg~~~l~~p~~~~~~~~ 118 (244)
T 2y88_A 82 GIRDDESLAAA---LATGCARVNVGTAALENPQWCARVIG 118 (244)
T ss_dssp SCCSHHHHHHH---HHTTCSEEEECHHHHHCHHHHHHHHH
T ss_pred CCCCHHHHHHH---HHcCCCEEEECchHhhChHHHHHHHH
Confidence 35777775555 5579999999985 4444544443
No 166
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=44.94 E-value=1.1e+02 Score=23.73 Aligned_cols=81 Identities=15% Similarity=0.204 Sum_probs=46.8
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcc-cCeEEEecCC
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQG-LGGIVLKVED 154 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q--~~~~~l~a~v~~~~eA~~~~~~LE~G-~dGVvl~~~d 154 (363)
...+.++.-..... ...+.++++..-.. ..--.++..+. .....++...... +......+++.| +++++.+|-+
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~~l~kP~~ 112 (154)
T 2rjn_A 36 TFTSPLDALEALKG-TSVQLVISDMRMPE-MGGEVFLEQVAKSYPDIERVVISGYA-DAQATIDAVNRGKISRFLLKPWE 112 (154)
T ss_dssp EESCHHHHHHHHTT-SCCSEEEEESSCSS-SCHHHHHHHHHHHCTTSEEEEEECGG-GHHHHHHHHHTTCCSEEEESSCC
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCcEEEEecCC-CHHHHHHHHhccchheeeeCCCC
Confidence 45565553333222 24677777533111 12223333332 2345666655544 456778889998 9999999999
Q ss_pred HHHHHHH
Q 017962 155 VKAVLAL 161 (363)
Q Consensus 155 ~~ei~~l 161 (363)
++++...
T Consensus 113 ~~~L~~~ 119 (154)
T 2rjn_A 113 DEDVFKV 119 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877543
No 167
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=44.63 E-value=49 Score=30.97 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=63.2
Q ss_pred CchhHHHHHHHhCccEEEEccc-chhh-hhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhh--hccccCCC
Q 017962 20 ESKQVMTAAVERGWNTFVFLSE-NQQL-AIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQ--LQPADGQA 95 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~-~~~~-~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~--~~~~~~~~ 95 (363)
.+.+++.++.+.|.-+++.... +.+. .+.+..+.... ++.+++-+-+.++...+. .+.. ...
T Consensus 24 s~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~~-------------~~p~gvnl~~~~~~~~~~~~~a~~-~g~ 89 (332)
T 2z6i_A 24 ADGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSLT-------------DKPFGVNIMLLSPFVEDIVDLVIE-EGV 89 (332)
T ss_dssp CCHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHHC-------------CSCEEEEECTTSTTHHHHHHHHHH-TTC
T ss_pred CcHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhc-------------CCCEEEEecCCCCCHHHHHHHHHH-CCC
Confidence 4578888889999877775431 2221 11112221100 122333222223321122 2222 357
Q ss_pred ceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 96 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 96 ~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
+.|.+.+.. |. .++.++...+..++..+.+.++|+.+ .+.|+|+|++..
T Consensus 90 d~V~~~~g~----p~-~~i~~l~~~g~~v~~~v~~~~~a~~~---~~~GaD~i~v~g 138 (332)
T 2z6i_A 90 KVVTTGAGN----PS-KYMERFHEAGIIVIPVVPSVALAKRM---EKIGADAVIAEG 138 (332)
T ss_dssp SEEEECSSC----GG-GTHHHHHHTTCEEEEEESSHHHHHHH---HHTTCSCEEEEC
T ss_pred CEEEECCCC----hH-HHHHHHHHcCCeEEEEeCCHHHHHHH---HHcCCCEEEEEC
Confidence 888887653 43 45666665677899999999988764 468999999964
No 168
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=44.50 E-value=28 Score=26.31 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=29.0
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++......+ ......+++.|+++++.+|-+++++...
T Consensus 82 ~~~ii~ls~~~~-~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 121 (140)
T 3cg0_A 82 NLPIIFITSSQD-VETFQRAKRVNPFGYLAKPVAADTLHRS 121 (140)
T ss_dssp CCCEEEEECCCC-HHHHHHHHTTCCSEEEEESCCHHHHHHH
T ss_pred CCCEEEEecCCC-HHHHHHHHhcCCCEEEeCCCCHHHHHHH
Confidence 445665554433 4556678899999999999999887544
No 169
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=44.35 E-value=41 Score=29.79 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=58.2
Q ss_pred EEEEEEEEEcCCc-ceEEEeecC---CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee-----cCCceeEEEe-
Q 017962 179 KATVTRVDVAGMG-DRVCVDLCS---LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN-----AGPVHAYVLV- 248 (363)
Q Consensus 179 ~atVt~V~~vGmG-dRVCVDtcs---ll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVN-----AGaVHaYv~~- 248 (363)
+++|++++.+.-. -|+.+..-. -+.||+=+. ++-.. ......|||-+- .|-+.=.+..
T Consensus 7 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~----------l~~~~--~~~~~~R~ySi~s~~~~~~~l~~~vk~~ 74 (262)
T 1ep3_B 7 MMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLH----------LAVPN--GAMLLRRPISISSWDKRAKTCTILYRIG 74 (262)
T ss_dssp EEEEEEEEEEETTEEEEEEESGGGGGCCSTTCEEE----------ECCSC--TTCCSCEEEECCEEETTTTEEEEEEECC
T ss_pred ceEEEEEEEecCCEEEEEEEcCcccccCCCCceEE----------EEcCC--CCceeeEEEEeeeecCCCCEEEEEEEEe
Confidence 5788888877532 133333322 234444322 22111 112456777652 3455656666
Q ss_pred -cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEe--ccceeEEEEE
Q 017962 249 -PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE--SRPLILVEAK 295 (363)
Q Consensus 249 -pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE--~RPLllIeAe 295 (363)
.|.-|+||..|+.||+|.+-...|+.-. ..-. .+|++||=+-
T Consensus 75 ~~G~~S~~l~~l~~Gd~v~v~gP~G~~f~-----l~~~~~~~~~lliagG 119 (262)
T 1ep3_B 75 DETTGTYKLSKLESGAKVDVMGPLGNGFP-----VAEVTSTDKILIIGGG 119 (262)
T ss_dssp CTTSHHHHHHTCCTTCEEEEEEEESBCCC-----CTTCCTTSEEEEEEEG
T ss_pred cCCchHHHHhcCCCCCEEEEEcccCCCcc-----CCCccCCCeEEEEECc
Confidence 6888999999999999999887776211 1111 5788888653
No 170
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=43.44 E-value=61 Score=24.19 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=27.3
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLALK 162 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~-d~~ei~~l~ 162 (363)
...++...... +......+++.|+++++.+|- +++++.+.-
T Consensus 79 ~~~ii~~t~~~-~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i 120 (130)
T 3eod_A 79 QTPVLVISATE-NMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 (130)
T ss_dssp CCCEEEEECCC-CHHHHHHHHHHCCSEEEESCC---CHHHHHH
T ss_pred CCCEEEEEcCC-CHHHHHHHHHcCCCEEEeCCCCcHHHHHHHH
Confidence 45566555543 344566788999999999998 787775543
No 171
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=43.29 E-value=19 Score=32.28 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=29.4
Q ss_pred hhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017962 112 NIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 160 (363)
Q Consensus 112 nliA~~q~~~~~l~a-~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~ 160 (363)
.+++.++..+-++++ .+++.++++ ..++.|+|||+ ||+|+.+.+
T Consensus 201 ~~v~~~~~~G~~v~~WTvn~~~~~~---~l~~~GVdgIi--TD~P~~~~~ 245 (252)
T 3qvq_A 201 QQVSDIKAAGYKVLAFTINDESLAL---KLYNQGLDAVF--SDYPQKIQS 245 (252)
T ss_dssp HHHHHHHHTTCEEEEECCCCHHHHH---HHHHTTCCEEE--ESSHHHHHH
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHH---HHHHcCCCEEE--eCCHHHHHH
Confidence 455666555556655 456666655 45679999988 888887643
No 172
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=43.01 E-value=68 Score=28.06 Aligned_cols=111 Identities=16% Similarity=0.069 Sum_probs=71.1
Q ss_pred chhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec--ChhhhhhhccccCCCceE
Q 017962 21 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS--TPQELQQLQPADGQAENI 98 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~--~~e~~e~~~~~~~~~~~v 98 (363)
.-.-+..|++.|+|.|=++= -...||.++--.+..+- -..|. +-+++..+.
T Consensus 24 Tl~Af~~A~~~G~d~iE~DV-----------------~lT~Dg~lVv~HD~~l~-~g~v~~~t~~eL~~l~--------- 76 (224)
T 1vd6_A 24 TLESFRLALEAGLDGVELDV-----------------WPTRDGVFAVRHDPDTP-LGPVFQVDYADLKAQE--------- 76 (224)
T ss_dssp SHHHHHHHHHTTCSEEEEEE-----------------EECTTSCEEECSCSEET-TEEGGGSCHHHHHHHS---------
T ss_pred hHHHHHHHHHcCCCEEEEEe-----------------eEecCCcEEEECCCccC-CCChhhCCHHHHHhcC---------
Confidence 46778889999999764422 12366765533332211 01122 222222221
Q ss_pred EEeCCCCeeeehhhhhhccc-CCCceEEEEcCCHH-----HHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 99 VIDLPDWQVIPAENIVASFQ-GSGKTVFAISKTPS-----EAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 99 vv~~~dW~iIPlEnliA~~q-~~~~~l~a~v~~~~-----eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
-+|-.||.+++.+. +.+..+.-..++.. -++..+..++. .+-|++.+-|+..+..+++..
T Consensus 77 ------~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~-~~~v~i~Sf~~~~l~~~~~~~ 142 (224)
T 1vd6_A 77 ------PDLPRLEEVLALKEAFPQAVFNVELKSFPGLGEEAARRLAALLRG-REGVWVSSFDPLALLALRKAA 142 (224)
T ss_dssp ------TTCCBHHHHHGGGGTCTTCEEEEEECCCTTSHHHHHHHHHHHTTT-CSSEEEEESCHHHHHHHHHHC
T ss_pred ------CCCCCHHHHHHhhhccCCceEEEEECCCCCccHHHHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHC
Confidence 33444999999987 55678899988754 25668888888 888999999999988888764
No 173
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=42.81 E-value=19 Score=32.21 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=30.0
Q ss_pred hhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 112 NIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 112 nliA~~q~~~~~l~a~-v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
.+|++++..+-++++- +++.++++. .++.|+|||+ ||+|+.+.++
T Consensus 187 ~~v~~~~~~G~~v~~WTVn~~~~~~~---l~~~GVdgIi--TD~P~~~~~~ 232 (238)
T 3no3_A 187 DWVKDCKVLGMTSNVWTVDDPKLMEE---MIDMGVDFIT--TDLPEETQKI 232 (238)
T ss_dssp THHHHHHHTTCEEEEECCCSHHHHHH---HHHHTCSEEE--ESCHHHHHHH
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHH---HHHcCCCEEE--CCCHHHHHHH
Confidence 4566666555565554 566665554 5678999988 7889876443
No 174
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=42.71 E-value=45 Score=25.83 Aligned_cols=80 Identities=20% Similarity=0.276 Sum_probs=43.3
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeee--ehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVI--PAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iI--PlEnliA~~q~--~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
...+.++.-.........+.+|+ ||..- .--.++..+.. ....++..... .+......+++.|+++++.+|-
T Consensus 34 ~~~~~~~a~~~l~~~~~~dlvi~---d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~ 109 (154)
T 2qsj_A 34 GAETVSDALAFLEADNTVDLILL---DVNLPDAEAIDGLVRLKRFDPSNAVALISGE-TDHELIRAALEAGADGFIPKSA 109 (154)
T ss_dssp EESSHHHHHHHHHTTCCCSEEEE---CC------CHHHHHHHHHHCTTSEEEEC------CHHHHHHHHTTCCBBCCTTS
T ss_pred EecCHHHHHHHHhccCCCCEEEE---eCCCCCCchHHHHHHHHHhCCCCeEEEEeCC-CCHHHHHHHHHccCCEEEeCCC
Confidence 35565553333322134677777 44321 11223333322 24566655544 4456778899999999999999
Q ss_pred CHHHHHHH
Q 017962 154 DVKAVLAL 161 (363)
Q Consensus 154 d~~ei~~l 161 (363)
+++++.+.
T Consensus 110 ~~~~L~~~ 117 (154)
T 2qsj_A 110 DPQVLIHA 117 (154)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99887554
No 175
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=42.69 E-value=50 Score=24.56 Aligned_cols=64 Identities=8% Similarity=0.203 Sum_probs=39.5
Q ss_pred CCceEEEeCCCCee--eehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 94 QAENIVIDLPDWQV--IPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 94 ~~~~vvv~~~dW~i--IPlEnliA~~q~----~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..+.+++ ||.. ..--.++..+.. ....++..... .+......+++.|+++.+.+|-+++++.+.
T Consensus 51 ~~dlvl~---D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 120 (129)
T 1p6q_A 51 PHHLVIS---DFNMPKMDGLGLLQAVRANPATKKAAFIILTAQ-GDRALVQKAAALGANNVLAKPFTIEKMKAA 120 (129)
T ss_dssp CCSEEEE---CSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSC-CCHHHHHHHHHHTCSCEECCCSSHHHHHHH
T ss_pred CCCEEEE---eCCCCCCCHHHHHHHHhcCccccCCCEEEEeCC-CCHHHHHHHHHcCCCEEEECCCCHHHHHHH
Confidence 3566666 3332 122234555543 23456555444 344566788899999999999999887543
No 176
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=42.67 E-value=29 Score=25.70 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=28.6
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++...... +......+++.|+++.+.+|-+++++...
T Consensus 74 ~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 113 (123)
T 1xhf_A 74 NVALMFLTGRD-NEVDKILGLEIGADDYITKPFNPRELTIR 113 (123)
T ss_dssp CCEEEEEESCC-SHHHHHHHHHHTCSEEEESSCCHHHHHHH
T ss_pred CCcEEEEECCC-ChHHHHHHHhcCcceEEeCCCCHHHHHHH
Confidence 45566554443 33456778899999999999999887543
No 177
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=42.63 E-value=59 Score=31.99 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=65.5
Q ss_pred eCchhHHHHHHHhCccEEEEcccc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc
Q 017962 19 TESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 92 (363)
Q Consensus 19 ~~~K~~vt~AlEsG~~~~v~~~~~------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~ 92 (363)
....+.+..+++.|++.+.+...+ .+..+.+.+. .| +.++. ...+.+.++...+..
T Consensus 236 ~~~~~~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~---~p------------~~pvi-~g~~~t~e~a~~l~~-- 297 (494)
T 1vrd_A 236 PETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKAD---YP------------DLPVV-AGNVATPEGTEALIK-- 297 (494)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHH---CT------------TSCEE-EEEECSHHHHHHHHH--
T ss_pred HhHHHHHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHH---CC------------CceEE-eCCcCCHHHHHHHHH--
Confidence 344778889999999999875432 1112222111 00 12221 135778887655443
Q ss_pred CCCceEEEeC-----------CCCeeeeh----hhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 93 GQAENIVIDL-----------PDWQVIPA----ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 93 ~~~~~vvv~~-----------~dW~iIPl----EnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
..++.+++.. .+|. +|. ..+.+.+...+..|++ .+.+.+++..++ ..|+|+|.+-.
T Consensus 298 ~G~d~I~v~~~~G~~~~~~~~~~~g-~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kal---a~GAd~V~iGr 370 (494)
T 1vrd_A 298 AGADAVKVGVGPGSICTTRVVAGVG-VPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKAL---AAGAESVMVGS 370 (494)
T ss_dssp TTCSEEEECSSCSTTCHHHHHHCCC-CCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHH---HTTCSEEEESH
T ss_pred cCCCEEEEcCCCCccccccccCCCC-ccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHH---HcCCCEEEECH
Confidence 3588888833 1332 333 2333333334567888 788888887665 46999999864
No 178
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=42.31 E-value=69 Score=27.47 Aligned_cols=49 Identities=27% Similarity=0.209 Sum_probs=29.4
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 150 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl 150 (363)
.++.+.+...+. +++.+...+. . ..+-..+.|.+|++. +.+.|+|.|++
T Consensus 94 gad~v~l~~~~~---~~~~~~~~~g-~-~~~~~s~~t~~e~~~---a~~~g~d~v~~ 142 (227)
T 2tps_A 94 KADGIHIGQEDA---NAKEVRAAIG-D-MILGVSAHTMSEVKQ---AEEDGADYVGL 142 (227)
T ss_dssp TCSEEEECTTSS---CHHHHHHHHT-T-SEEEEEECSHHHHHH---HHHHTCSEEEE
T ss_pred CCCEEEECCCcc---CHHHHHHhcC-C-cEEEEecCCHHHHHH---HHhCCCCEEEE
Confidence 467787754443 3444443332 2 233334688888654 45789999996
No 179
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=42.11 E-value=11 Score=31.72 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=23.8
Q ss_pred CceeeeeecCCCCEEEEEecCCCcccceeee
Q 017962 327 EKAIPVTSLKVGDEVLLRVQGAARHTGIEIQ 357 (363)
Q Consensus 327 g~~vsVt~Lk~GD~VL~~~~~~gRHfG~~I~ 357 (363)
++.|+..+|+|||.|.... .+..|+||-+.
T Consensus 82 g~~v~~~~~~pGDlvff~~-~~~~HVgIy~G 111 (142)
T 3gt2_A 82 GQKILPQQARKGDLIFYGP-EGTQSVAMYLG 111 (142)
T ss_dssp SEEECGGGCCTTCEEEESG-GGCSEEEEEEE
T ss_pred CceechhhCCCCCEEEeCC-CCCCEEEEEec
Confidence 6788889999999987653 33579999874
No 180
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=41.70 E-value=38 Score=33.52 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=35.5
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccCC-CceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQGS-GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~~-~~~l~a-~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
.++.++++...-.--.+.++|.++... +..|++ .+.+.++|+.+. +.|+|+|++.
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~---~aGAD~I~vG 212 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELI---ENGADGIKVG 212 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHH---HTTCSEEEEC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHH---HcCCCEEEEe
Confidence 578888754321111224455555443 567885 899999998755 6799999993
No 181
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=40.93 E-value=35 Score=25.47 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=29.4
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++..... .+......+++.|+++.+.+|-+++++.+.
T Consensus 75 ~~~ii~~s~~-~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~ 114 (126)
T 1dbw_A 75 NIPSIVITGH-GDVPMAVEAMKAGAVDFIEKPFEDTVIIEA 114 (126)
T ss_dssp CCCEEEEECT-TCHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHhCHHHheeCCCCHHHHHHH
Confidence 4456655444 334566788999999999999999887544
No 182
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=40.90 E-value=48 Score=25.14 Aligned_cols=40 Identities=15% Similarity=0.050 Sum_probs=29.1
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++...... +......+++.|+++++.+|-+++++...
T Consensus 87 ~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~L~~~ 126 (135)
T 3snk_A 87 TVPLIAVSDEL-TSEQTRVLVRMNASDWLHKPLDGKELLNA 126 (135)
T ss_dssp TCCEEEEESCC-CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCcEEEEeCCC-CHHHHHHHHHcCcHhhccCCCCHHHHHHH
Confidence 45566555443 34456778999999999999999887543
No 183
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=39.60 E-value=26 Score=31.33 Aligned_cols=30 Identities=0% Similarity=-0.030 Sum_probs=25.4
Q ss_pred CCcEEEEEe-CchhHHHH-HHHhCccEEEEcc
Q 017962 11 KPKRVWIWT-ESKQVMTA-AVERGWNTFVFLS 40 (363)
Q Consensus 11 ~~K~vWvw~-~~K~~vt~-AlEsG~~~~v~~~ 40 (363)
..+.+|+|+ .+++.+.. .++.|+|+|+.+.
T Consensus 193 ~G~~v~~wTvn~~~~~~~~l~~~GvdgIiTD~ 224 (248)
T 1zcc_A 193 AGLEIMVYYGGDDMAVHREIATSDVDYINLDR 224 (248)
T ss_dssp HTCEEEEECCCCCHHHHHHHHHSSCSEEEESC
T ss_pred CCCEEEEECCCCHHHHHHHHHHcCCCEEEECC
Confidence 457899998 57888888 9999999999865
No 184
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=39.30 E-value=14 Score=30.02 Aligned_cols=30 Identities=40% Similarity=0.599 Sum_probs=21.9
Q ss_pred cceEEEecCCCCCCCCCceeeeeecCCCCEEEEEe
Q 017962 311 AETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRV 345 (363)
Q Consensus 311 AETIrLv~p~~~~~~~g~~vsVt~Lk~GD~VL~~~ 345 (363)
+.++++++.+. ...+++.+|+|||.|+++-
T Consensus 11 p~~a~v~r~g~-----~~~i~~~~l~~GDiv~v~~ 40 (113)
T 2hc8_A 11 AKTAVVIRDGK-----EIAVPVEEVAVGDIVIVRP 40 (113)
T ss_dssp CSEEEEEETTE-----EEEEEGGGCCTTCEEEECT
T ss_pred CCEEEEEECCE-----EEEEEHHHCCCCCEEEECC
Confidence 45666666331 3569999999999999963
No 185
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=39.24 E-value=40 Score=24.78 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=28.5
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++......+ ......+++.|+++.+.+|-+++++.+.
T Consensus 75 ~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 114 (120)
T 1tmy_A 75 NAKIIVCSAMGQ-QAMVIEAIKAGAKDFIVKPFQPSRVVEA 114 (120)
T ss_dssp TCCEEEEECTTC-HHHHHHHHHTTCCEEEESSCCHHHHHHH
T ss_pred CCeEEEEeCCCC-HHHHHHHHHhCcceeEeCCCCHHHHHHH
Confidence 445665554433 3456778899999999999999877543
No 186
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=38.74 E-value=2.3e+02 Score=25.90 Aligned_cols=80 Identities=23% Similarity=0.327 Sum_probs=54.9
Q ss_pred eeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEec--ccee-EEEEEecCCCCeEEEEEeEecceEEEecC
Q 017962 243 HAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIES--RPLI-LVEAKTNSGDQTLYGIILQNAETVALVSP 319 (363)
Q Consensus 243 HaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~--RPLl-lIeAe~~~~~g~~~sviLQnAETIrLv~p 319 (363)
+.|-++++|+.-|.|. . .+++.++|++-.. +++|+++.. +|+- +=|.+.. +|+.+.-. .+...|..+.|
T Consensus 106 ~Gwglt~dg~~L~vSd-g-s~~l~~iDp~t~~---~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanv-w~s~~I~vIDp 177 (243)
T 3mbr_X 106 EGWALTSDDSHLYMSD-G-TAVIRKLDPDTLQ---QVGSIKVTAGGRPLDNLNELEWV--NGELLANV-WLTSRIARIDP 177 (243)
T ss_dssp CCCEEEECSSCEEEEC-S-SSEEEEECTTTCC---EEEEEECEETTEECCCEEEEEEE--TTEEEEEE-TTTTEEEEECT
T ss_pred CceEEeeCCCEEEEEC-C-CCeEEEEeCCCCe---EEEEEEEccCCcccccceeeEEe--CCEEEEEE-CCCCeEEEEEC
Confidence 6789999999999998 4 6789999986543 456777654 3543 3466654 67765333 33558999999
Q ss_pred CCCCCCCCceeeeeec
Q 017962 320 CKGTGEQEKAIPVTSL 335 (363)
Q Consensus 320 ~~~~~~~g~~vsVt~L 335 (363)
.. |+.+..-+|
T Consensus 178 ~t-----G~V~~~idl 188 (243)
T 3mbr_X 178 AS-----GKVVAWIDL 188 (243)
T ss_dssp TT-----CBEEEEEEC
T ss_pred CC-----CCEEEEEEC
Confidence 83 566555553
No 187
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=38.56 E-value=29 Score=25.35 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=28.1
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++......+ ......+++.|+++.+.+|-+++++.+.
T Consensus 72 ~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~Kp~~~~~l~~~ 111 (120)
T 2a9o_A 72 SVPILMLSAKDS-EFDKVIGLELGADDYVTKPFSNRELQAR 111 (120)
T ss_dssp CCCEEEEESCCS-HHHHHHHHHHTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEecCCc-hHHHHHHHhCCHhheEeCCCCHHHHHHH
Confidence 345555554433 3445678899999999999999887543
No 188
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=38.09 E-value=1.9e+02 Score=24.79 Aligned_cols=51 Identities=12% Similarity=0.056 Sum_probs=34.6
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
.++.+-+...+ .|.+.+-..+ . +..+...+.|.+|++. +.+.|+|.|++.+
T Consensus 88 gad~v~l~~~~---~~~~~~~~~~-~-~~~ig~sv~t~~~~~~---a~~~gaD~i~~~~ 138 (221)
T 1yad_A 88 TIHRVQLPSGS---FSPKQIRARF-P-HLHIGRSVHSLEEAVQ---AEKEDADYVLFGH 138 (221)
T ss_dssp TCCEEEECTTS---CCHHHHHHHC-T-TCEEEEEECSHHHHHH---HHHTTCSEEEEEC
T ss_pred CCCEEEeCCCc---cCHHHHHHHC-C-CCEEEEEcCCHHHHHH---HHhCCCCEEEECC
Confidence 56777776554 3555554433 2 4567778889888765 4578999999976
No 189
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=37.87 E-value=32 Score=29.03 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=32.2
Q ss_pred CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhcc
Q 017962 120 SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDG 167 (363)
Q Consensus 120 ~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~~~ 167 (363)
....++.......+......+++.|++++|.+|-+ .-...++.++.+
T Consensus 150 ~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~-~L~~~i~~~l~~ 196 (206)
T 3mm4_A 150 VRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN-QLANVIREIESK 196 (206)
T ss_dssp CCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT-THHHHHHHHC--
T ss_pred CCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH-HHHHHHHHHHhh
Confidence 45677777776545566778899999999999987 444444555543
No 190
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=37.78 E-value=49 Score=24.92 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=29.6
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++..... .+......+++.|+++++.+|-+++++.+.
T Consensus 80 ~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 119 (140)
T 2qr3_A 80 DLPVVLFTAY-ADIDLAVRGIKEGASDFVVKPWDNQKLLET 119 (140)
T ss_dssp TCCEEEEEEG-GGHHHHHHHHHTTCCEEEEESCCHHHHHHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHcCchheeeCCCCHHHHHHH
Confidence 4456655544 345667788999999999999999887544
No 191
>4hpe_A Putative cell WALL hydrolase TN916-like,CTN1-ORF1; two domains protein, SLT/lysozyme-like muramidase, NLPC/P60 endopeptidase; 2.38A {Clostridium difficile}
Probab=37.69 E-value=15 Score=34.84 Aligned_cols=31 Identities=26% Similarity=0.450 Sum_probs=23.8
Q ss_pred CceeeeeecCCCCEEEEEecC----CCcccceeee
Q 017962 327 EKAIPVTSLKVGDEVLLRVQG----AARHTGIEIQ 357 (363)
Q Consensus 327 g~~vsVt~Lk~GD~VL~~~~~----~gRHfG~~I~ 357 (363)
+..|+..+|+|||-|...... ...|+||=+.
T Consensus 241 g~~v~~~~l~pGDLvff~~~~~~~~~~~HVgIy~G 275 (308)
T 4hpe_A 241 TQHLPLSQAKAGDLVFFHSTYNAGSYVTHVGIYVG 275 (308)
T ss_dssp SEEECGGGCCTTCEEEEECSSSCSSSEEEEEEECS
T ss_pred CeeechhhCCCCCEEEEcCCCCCCCCccEEEEEEc
Confidence 567888999999998887532 2349999774
No 192
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=37.29 E-value=76 Score=24.04 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=45.4
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehh---hhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAE---NIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlE---nliA~~q--~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
...+.++.-..... ...+.++++ | .|-. .++..+. .....++...... +......+++.|+++++.+|
T Consensus 33 ~~~~~~~a~~~l~~-~~~dlvi~d---~--~~~~~g~~~~~~l~~~~~~~pii~ls~~~-~~~~~~~~~~~g~~~~l~kP 105 (142)
T 2qxy_A 33 WAKNEQEAFTFLRR-EKIDLVFVD---V--FEGEESLNLIRRIREEFPDTKVAVLSAYV-DKDLIINSVKAGAVDYILKP 105 (142)
T ss_dssp EESSHHHHHHHHTT-SCCSEEEEE---C--TTTHHHHHHHHHHHHHCTTCEEEEEESCC-CHHHHHHHHHHTCSCEEESS
T ss_pred EECCHHHHHHHHhc-cCCCEEEEe---C--CCCCcHHHHHHHHHHHCCCCCEEEEECCC-CHHHHHHHHHCCcceeEeCC
Confidence 34555443332222 246777774 4 3322 2333332 2245666665543 34566788999999999999
Q ss_pred CCHHHHHHH
Q 017962 153 EDVKAVLAL 161 (363)
Q Consensus 153 ~d~~ei~~l 161 (363)
-+++++.+.
T Consensus 106 ~~~~~l~~~ 114 (142)
T 2qxy_A 106 FRLDYLLER 114 (142)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999887654
No 193
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=37.28 E-value=45 Score=25.22 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=26.9
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 123 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 123 ~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
.++....+. +......+++.|+++.+.+|-+++++.+.
T Consensus 85 ~ii~~s~~~-~~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 122 (136)
T 1dcf_A 85 LLVALSGNT-DKSTKEKCMSFGLDGVLLKPVSLDNIRDV 122 (136)
T ss_dssp EEEEEESCC-SHHHHHHHHHTTCCEEEESSCCHHHHHHH
T ss_pred eEEEEeCCC-CHHHHHHHHHcCCCeEEECCCCHHHHHHH
Confidence 344444333 33455678899999999999999887643
No 194
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=36.84 E-value=29 Score=25.89 Aligned_cols=43 Identities=9% Similarity=-0.034 Sum_probs=31.3
Q ss_pred CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 017962 120 SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEY 164 (363)
Q Consensus 120 ~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~ 164 (363)
....++......+... ..+++.|+++++.+|-+++++.+....
T Consensus 76 ~~~~ii~~s~~~~~~~--~~~~~~g~~~~l~KP~~~~~L~~~i~~ 118 (127)
T 3i42_A 76 KTSKFVAVSGFAKNDL--GKEACELFDFYLEKPIDIASLEPILQS 118 (127)
T ss_dssp SCCEEEEEECC-CTTC--CHHHHHHCSEEEESSCCHHHHHHHHHH
T ss_pred CCCCEEEEECCcchhH--HHHHHHhhHHheeCCCCHHHHHHHHHH
Confidence 3456777666665544 678899999999999999988655443
No 195
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}
Probab=36.83 E-value=31 Score=31.39 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=42.6
Q ss_pred eeeecCCceeEE----EecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEecccee
Q 017962 235 FRVNAGPVHAYV----LVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLI 290 (363)
Q Consensus 235 FRVNAGaVHaYv----~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLl 290 (363)
-.|+.||+.+.. ++|-|=+.+=.+++.||.|.|+|.+|+ .+-+|++..-+.-|.
T Consensus 78 VvVD~GAv~Al~~GaSLl~pGV~~v~g~F~~GD~V~V~~~~G~--~IAvG~a~~sS~Ei~ 135 (195)
T 3zv0_C 78 IVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGE--AIAVAIAQMSTVDLA 135 (195)
T ss_dssp EEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEECTTCC--EEEEEEESSCHHHHH
T ss_pred EEECHHHHHHHhcCCCccCCCcEecCCCcCCCCEEEEEcCCCC--EEEEEEEcCCHHHHh
Confidence 467888887642 556777888899999999999999986 577899887766553
No 196
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=36.71 E-value=92 Score=25.09 Aligned_cols=57 Identities=16% Similarity=0.027 Sum_probs=34.2
Q ss_pred cCCCceEEEeCCCCeee-ehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017962 92 DGQAENIVIDLPDWQVI-PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 154 (363)
Q Consensus 92 ~~~~~~vvv~~~dW~iI-PlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d 154 (363)
...++.+|+...+.... .+-.+...+ ....++++.+++.+..+.+. +.|+| ++.|..
T Consensus 82 ~~~ad~Vi~~~~~~~~~~~~~~~~~~~-~~~~~iv~~~~~~~~~~~l~---~~G~~--vi~p~~ 139 (155)
T 2g1u_A 82 MEKADMVFAFTNDDSTNFFISMNARYM-FNVENVIARVYDPEKIKIFE---ENGIK--TICPAV 139 (155)
T ss_dssp GGGCSEEEECSSCHHHHHHHHHHHHHT-SCCSEEEEECSSGGGHHHHH---TTTCE--EECHHH
T ss_pred cccCCEEEEEeCCcHHHHHHHHHHHHH-CCCCeEEEEECCHHHHHHHH---HCCCc--EEcHHH
Confidence 34578888865554322 112222222 33568999999999887533 48999 555553
No 197
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii}
Probab=36.51 E-value=21 Score=31.17 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=41.2
Q ss_pred CeeeecCCceeE----EEecCCceeeeeeccCCCeEEEEcC-CCCeeEEeeeeEEEeccce
Q 017962 234 PFRVNAGPVHAY----VLVPGGKTCYLSELKSGKEVIVVDQ-KGRQRTAVVGRVKIESRPL 289 (363)
Q Consensus 234 PFRVNAGaVHaY----v~~pggkT~YLSEL~sG~eVLvVd~-~G~~R~~~VGRvKIE~RPL 289 (363)
-..|+.||+.+- =++|-|-+..=.+++.||.|.|++. +| +..-+|++..-..-|
T Consensus 96 ~v~vd~gA~~~l~~GasL~~~GV~~~~g~f~~Gd~V~v~~~~~g--~~iavG~~~~ss~e~ 154 (179)
T 3d79_A 96 RVVVDEGAVPHILNGADVMAPGIVDADEGIKEGDFVFVVEEKYG--RPLAIGIALMSGKVM 154 (179)
T ss_dssp EEEECGGGHHHHHTTCCEEGGGEEEECTTCCTTCEEEEEETTTC--CEEEEEEESSCHHHH
T ss_pred EEEECccHHHHHhCCCCcCCCcEEEccCCccCCCEEEEEECCCC--eEEEEEEEEcCHHHH
Confidence 367899988653 4556677888789999999999997 56 458899988765544
No 198
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=36.33 E-value=40 Score=25.09 Aligned_cols=66 Identities=12% Similarity=0.153 Sum_probs=38.9
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~----~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..+.++++..-.. ..--.++..+.. ....++...... +......+++.|+++.+.+|-+++++.+.
T Consensus 49 ~~dlvi~D~~l~~-~~g~~l~~~l~~~~~~~~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~KP~~~~~l~~~ 118 (128)
T 1jbe_A 49 GYGFVISDWNMPN-MDGLELLKTIRAXXAMSALPVLMVTAEA-KKENIIAAAQAGASGYVVKPFTAATLEEK 118 (128)
T ss_dssp CCCEEEEESCCSS-SCHHHHHHHHHC--CCTTCCEEEEESSC-CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhhcccCCCcEEEEecCc-cHHHHHHHHHhCcCceeecCCCHHHHHHH
Confidence 3566666432111 122234444433 234555554433 33456788999999999999999877543
No 199
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=36.31 E-value=38 Score=25.89 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=28.8
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 162 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~ 162 (363)
...++...... +......+++.|+++.+.+|-+++++.+.-
T Consensus 81 ~~~ii~lt~~~-~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l 121 (133)
T 2r25_B 81 TSPIVALTAFA-DDSNIKECLESGMNGFLSKPIKRPKLKTIL 121 (133)
T ss_dssp CSCEEEEESCC-SHHHHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 34555554433 334567888999999999999998876543
No 200
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=36.00 E-value=1.2e+02 Score=25.76 Aligned_cols=71 Identities=8% Similarity=0.048 Sum_probs=41.6
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHH-HHHHHHHhhcccCeEEEecC---------CHHHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSE-AQIFLEALEQGLGGIVLKVE---------DVKAVLALKE 163 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~e-A~~~~~~LE~G~dGVvl~~~---------d~~ei~~l~~ 163 (363)
.++.+++...... =-++.++..++..+.+++..+.++.+ .+.+..+++.|+|.|.+.+. +.+.++++++
T Consensus 77 Gad~v~v~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~ 155 (211)
T 3f4w_A 77 GADYVTVLGVTDV-LTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLK 155 (211)
T ss_dssp TCSEEEEETTSCH-HHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHTCCEEEEECCHHHHHTTCCSHHHHHHHHH
T ss_pred CCCEEEEeCCCCh-hHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcCCCEEEEcCCCcccccCCCCHHHHHHHHH
Confidence 5788888655310 01355666655555566655433322 24456678899999887653 4566666655
Q ss_pred hh
Q 017962 164 YF 165 (363)
Q Consensus 164 ~~ 165 (363)
.+
T Consensus 156 ~~ 157 (211)
T 3f4w_A 156 VR 157 (211)
T ss_dssp HC
T ss_pred Hc
Confidence 43
No 201
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*
Probab=35.93 E-value=42 Score=30.27 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=31.5
Q ss_pred hhhhhcccCCCc--eEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 111 ENIVASFQGSGK--TVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 111 EnliA~~q~~~~--~l~a-~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
+.++.+++..+- ++++ .+++.++++.+ ++.|+|||+ ||.|+.+.++
T Consensus 212 ~~~v~~~~~~Glg~~V~~WTvn~~~~~~~l---~~~GVDgIi--TD~P~~~~~~ 260 (285)
T 1xx1_A 212 EAIKSRDSANGFINKIYYWSVDKVSTTKAA---LDVGVDGIM--TNYPNVLIGV 260 (285)
T ss_dssp HHHHHHTSTTCCCCEEEEECCCSHHHHHHH---HHHTCSEEE--ESCHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEeeCCCHHHHHHH---HhcCCCEEE--eCCHHHHHHH
Confidence 455666655444 6655 47788777665 578999998 7888876443
No 202
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=35.91 E-value=1.9e+02 Score=26.89 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=55.1
Q ss_pred eeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEe--ccceeE-EEEEecCCCCeEEEEEeEecceEEEecC
Q 017962 243 HAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE--SRPLIL-VEAKTNSGDQTLYGIILQNAETVALVSP 319 (363)
Q Consensus 243 HaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE--~RPLll-IeAe~~~~~g~~~sviLQnAETIrLv~p 319 (363)
+.+-++++|+.-|.|. . .+++.++|.+-.. +++++++. .||+-. =|.+.. +|+.. +=.....+|..+.|
T Consensus 128 eG~glt~dg~~L~~Sd-G-s~~i~~iDp~T~~---v~~~I~V~~~g~~~~~lNELe~~--~G~ly-an~w~~~~I~vIDp 199 (262)
T 3nol_A 128 EGWGLTHNDQYLIMSD-G-TPVLRFLDPESLT---PVRTITVTAHGEELPELNELEWV--DGEIF-ANVWQTNKIVRIDP 199 (262)
T ss_dssp CCCCEEECSSCEEECC-S-SSEEEEECTTTCS---EEEEEECEETTEECCCEEEEEEE--TTEEE-EEETTSSEEEEECT
T ss_pred CceEEecCCCEEEEEC-C-CCeEEEEcCCCCe---EEEEEEeccCCccccccceeEEE--CCEEE-EEEccCCeEEEEEC
Confidence 7788889999999998 4 5889999986433 46677775 477543 355554 67754 33344568999999
Q ss_pred CCCCCCCCceeeeeec
Q 017962 320 CKGTGEQEKAIPVTSL 335 (363)
Q Consensus 320 ~~~~~~~g~~vsVt~L 335 (363)
.. |+.+..-++
T Consensus 200 ~t-----G~V~~~Id~ 210 (262)
T 3nol_A 200 ET-----GKVTGIIDL 210 (262)
T ss_dssp TT-----CBEEEEEEC
T ss_pred CC-----CcEEEEEEC
Confidence 83 566555544
No 203
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=35.88 E-value=48 Score=27.88 Aligned_cols=10 Identities=50% Similarity=0.776 Sum_probs=8.8
Q ss_pred CCCCCCCeee
Q 017962 228 NYIASRPFRV 237 (363)
Q Consensus 228 ~Yva~RPFRV 237 (363)
=|+|.+||||
T Consensus 7 r~~p~~p~rv 16 (318)
T 4ggc_A 7 RYIPSLPDRI 16 (318)
T ss_dssp CCCCSSCSEE
T ss_pred cccCCCCCEE
Confidence 3899999998
No 204
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=35.85 E-value=76 Score=29.77 Aligned_cols=108 Identities=9% Similarity=0.083 Sum_probs=61.5
Q ss_pred chhHHHHHHHhCccEEEEcccc-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEE
Q 017962 21 SKQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 99 (363)
Q Consensus 21 ~K~~vt~AlEsG~~~~v~~~~~-~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vv 99 (363)
..+.+..+++.|++.+.+...+ .+..+.+. ..|.+ ++..+.+.++...+.. ..+|.++
T Consensus 91 ~~~~~~~~~~~g~d~V~l~~g~p~~~~~~l~-----------------~~g~~--v~~~v~s~~~a~~a~~--~GaD~i~ 149 (326)
T 3bo9_A 91 ADDLVKVCIEEKVPVVTFGAGNPTKYIRELK-----------------ENGTK--VIPVVASDSLARMVER--AGADAVI 149 (326)
T ss_dssp HHHHHHHHHHTTCSEEEEESSCCHHHHHHHH-----------------HTTCE--EEEEESSHHHHHHHHH--TTCSCEE
T ss_pred HHHHHHHHHHCCCCEEEECCCCcHHHHHHHH-----------------HcCCc--EEEEcCCHHHHHHHHH--cCCCEEE
Confidence 3688899999999998876533 22222221 12333 3346788887655433 2488999
Q ss_pred EeCC--CCe--eeehhhhhhcccC-CCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 100 IDLP--DWQ--VIPAENIVASFQG-SGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 100 v~~~--dW~--iIPlEnliA~~q~-~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
+... +.. -+|--+++.++.. .+..|++ .++|.+++..++. .|+|||.+-+
T Consensus 150 v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~---~GA~gV~vGs 206 (326)
T 3bo9_A 150 AEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFA---LGAEAVQMGT 206 (326)
T ss_dssp EECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH---HTCSEEEESH
T ss_pred EECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH---hCCCEEEech
Confidence 9652 111 1122233333211 1334555 3677777766554 6999999854
No 205
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=35.81 E-value=41 Score=24.67 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=28.7
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++......+ ......+++.|+++.+.+|-+++++...
T Consensus 72 ~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 111 (121)
T 2pl1_A 72 SLPILVLTARES-WQDKVEVLSAGADDYVTKPFHIEEVMAR 111 (121)
T ss_dssp CSCEEEEESCCC-HHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEecCCC-HHHHHHHHHcCccceEECCCCHHHHHHH
Confidence 345665554433 3455788999999999999999877543
No 206
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=35.77 E-value=23 Score=32.49 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=41.0
Q ss_pred CCCCCceEEEeccCceEEEEeecccc---CCCCCCC----------CeeeecCCceeEEEecCCceeeee---------e
Q 017962 201 LMRPGEGLLVGSFARGLFLVHSECLE---SNYIASR----------PFRVNAGPVHAYVLVPGGKTCYLS---------E 258 (363)
Q Consensus 201 ll~~GEGmLVGs~s~glfLVhsEt~e---~~Yva~R----------PFRVNAGaVHaYv~~pggkT~YLS---------E 258 (363)
+|+.|.=+.|-..+. .+.|..|... -+|.+.+ .|. +|-.-++||.-|+|+..... +
T Consensus 114 ~L~~gd~L~iP~r~~-tV~V~G~V~~p~~v~~~~g~~~~dYi~~agg~~-~Ad~~~v~VI~~nG~v~~~~~a~Wn~~~~~ 191 (236)
T 3p42_A 114 PLVGDYTLYTVQRPV-TITLLGAVSGAGQLPWLAGRSVTDYLQDHPRLA-GADKNNVMVITPEGETVVAPVALWNKRHVE 191 (236)
T ss_dssp BCCEEEEEECCCCCS-EEEEEESBTTCEEEECCTTCCHHHHHTTSCBCT-TBCSSEEEEECTTSCEEEEECSSTTCCCEE
T ss_pred ccCCCCEEEECCCCC-EEEEEeecCCcCeEeecCCCCHHHHHHhCCCCC-CCCCccEEEEeCCCCEEeccccccccCCCC
Confidence 355555455555443 4555666421 1233333 355 67778889999999876654 7
Q ss_pred ccCCCeEEE
Q 017962 259 LKSGKEVIV 267 (363)
Q Consensus 259 L~sG~eVLv 267 (363)
|.+||+|+|
T Consensus 192 l~PG~~I~V 200 (236)
T 3p42_A 192 PPPGSQLWL 200 (236)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999998876
No 207
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=35.70 E-value=1.3e+02 Score=24.73 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=43.8
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 155 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q--~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~ 155 (363)
...+.++.-..... ...+.++++..-.. ..--.++..+. .....++...... +......+++.|++|.+.+|-++
T Consensus 36 ~~~~~~~al~~~~~-~~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~~ii~ls~~~-~~~~~~~~~~~Ga~~~l~Kp~~~ 112 (215)
T 1a04_A 36 EASNGEQGIELAES-LDPDLILLDLNMPG-MNGLETLDKLREKSLSGRIVVFSVSN-HEEDVVTALKRGADGYLLKDMEP 112 (215)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEETTSTT-SCHHHHHHHHHHSCCCSEEEEEECCC-CHHHHHHHHHTTCSEEEETTCCH
T ss_pred EeCCHHHHHHHHHh-cCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCCcEEEEECCC-CHHHHHHHHHcCCcEEEeCCCCH
Confidence 34555443322222 24577777433111 11112333332 2244555554432 34456788899999999999999
Q ss_pred HHHHHH
Q 017962 156 KAVLAL 161 (363)
Q Consensus 156 ~ei~~l 161 (363)
+++.+.
T Consensus 113 ~~L~~~ 118 (215)
T 1a04_A 113 EDLLKA 118 (215)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887554
No 208
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=35.37 E-value=37 Score=25.93 Aligned_cols=40 Identities=5% Similarity=0.020 Sum_probs=28.5
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++...... +......+++.|+++++.+|-+++++.+.
T Consensus 80 ~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~KP~~~~~l~~~ 119 (136)
T 3kto_A 80 HLPTIVMASSS-DIPTAVRAMRASAADFIEKPFIEHVLVHD 119 (136)
T ss_dssp CCCEEEEESSC-CHHHHHHHHHTTCSEEEESSBCHHHHHHH
T ss_pred CCCEEEEEcCC-CHHHHHHHHHcChHHheeCCCCHHHHHHH
Confidence 34555544433 34556778899999999999999887654
No 209
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=35.28 E-value=40 Score=25.56 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=29.1
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++...... +......+++.|+++.+.+|-+++++.+.
T Consensus 75 ~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 114 (132)
T 3crn_A 75 GMKKIMVTGYA-SLENSVFSLNAGADAYIMKPVNPRDLLEK 114 (132)
T ss_dssp TSEEEEEESCC-CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCcEEEEeccc-cHHHHHHHHhccchhhccCCCCHHHHHHH
Confidence 45666655443 34456788999999999999999887543
No 210
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=35.10 E-value=38 Score=25.74 Aligned_cols=66 Identities=12% Similarity=0.208 Sum_probs=39.4
Q ss_pred CCceEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q--~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..+.++++..-. -+.--.++..+. .....++......+ ......+++.|+++.+.+|-+++++.+.
T Consensus 49 ~~dlvilD~~lp-~~~g~~~~~~l~~~~~~~~ii~ls~~~~-~~~~~~~~~~ga~~~l~Kp~~~~~L~~~ 116 (133)
T 3b2n_A 49 NPNVVILDIEMP-GMTGLEVLAEIRKKHLNIKVIIVTTFKR-PGYFEKAVVNDVDAYVLKERSIEELVET 116 (133)
T ss_dssp CCSEEEECSSCS-SSCHHHHHHHHHHTTCSCEEEEEESCCC-HHHHHHHHHTTCSEEEETTSCHHHHHHH
T ss_pred CCCEEEEecCCC-CCCHHHHHHHHHHHCCCCcEEEEecCCC-HHHHHHHHHcCCcEEEECCCCHHHHHHH
Confidence 356777732211 112223343332 23456666555433 3456788899999999999999887654
No 211
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=35.05 E-value=72 Score=24.18 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=45.5
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeee---ehhhhhhccc----CCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVI---PAENIVASFQ----GSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 150 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iI---PlEnliA~~q----~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl 150 (363)
...+.++.-.........+.+|+ ||..= .--.++..+. .....++...... +......+++.|+++++.
T Consensus 34 ~~~~~~~a~~~l~~~~~~dlvi~---D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~l~ 109 (140)
T 3lua_A 34 EVENLKKFYSIFKDLDSITLIIM---DIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSD-NPGYRHAALKFKVSDYIL 109 (140)
T ss_dssp EECSHHHHHTTTTTCCCCSEEEE---CSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCC-CHHHHHHHHHSCCSEEEE
T ss_pred EECCHHHHHHHHhcCCCCcEEEE---eCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCC-CHHHHHHHHHcCCCEEEE
Confidence 34555543332222134677777 44321 1122333332 2345666655443 334567788999999999
Q ss_pred ecCCHHHHHHHH
Q 017962 151 KVEDVKAVLALK 162 (363)
Q Consensus 151 ~~~d~~ei~~l~ 162 (363)
+|-+++++.+.-
T Consensus 110 KP~~~~~l~~~i 121 (140)
T 3lua_A 110 KPYPTKRLENSV 121 (140)
T ss_dssp SSCCTTHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 999988776543
No 212
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=34.81 E-value=66 Score=25.32 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=41.9
Q ss_pred CceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEec-ceEEEecCCCCCCCCCce
Q 017962 251 GKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNA-ETVALVSPCKGTGEQEKA 329 (363)
Q Consensus 251 gkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sviLQnA-ETIrLv~p~~~~~~~g~~ 329 (363)
-...++++|+.|+.|- ++|+|+ +..+.--+..+.. ..++..++.|+|. -+|++.--+. ..
T Consensus 5 ~~~~~I~~L~~g~~v~-----------i~~~V~-~~~~~~~~~~k~G-~~~~~~~~~l~D~TG~I~~t~w~~------~~ 65 (115)
T 2k50_A 5 HRMDTISKLEEGAETP-----------VTGRVM-KISSPRTFTTRKG-REGKLANVIIADDTGELRAVFWTE------NI 65 (115)
T ss_dssp TCCCCTTTCCTTCEEE-----------EEEEEE-EECCCEECCCTTS-SCCEEEEEEEEETTEEEEEEEETT------GG
T ss_pred cceEEHHHCCCCCEeE-----------EEEEEE-ECCCceEEEcCCC-CEEEEEEEEEEeCCCeEEEEEeCc------hh
Confidence 3456799999887653 344544 2222222222210 0156678888885 3566654331 11
Q ss_pred eeeeecCCCCEEEEEe
Q 017962 330 IPVTSLKVGDEVLLRV 345 (363)
Q Consensus 330 vsVt~Lk~GD~VL~~~ 345 (363)
-....|++||.|.+.=
T Consensus 66 ~~~~~l~~G~vv~i~g 81 (115)
T 2k50_A 66 KLLKKFREGDVIRIKD 81 (115)
T ss_dssp GGGGTCCTTSEEEEEE
T ss_pred hhhhcCCCCCEEEEEe
Confidence 1225799999999873
No 213
>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A*
Probab=34.80 E-value=49 Score=31.99 Aligned_cols=30 Identities=17% Similarity=0.395 Sum_probs=26.4
Q ss_pred CcEEEEEe-CchhHHHHHHHhCccEEEEccc
Q 017962 12 PKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 41 (363)
Q Consensus 12 ~K~vWvw~-~~K~~vt~AlEsG~~~~v~~~~ 41 (363)
-++|++|| .+.+.|...++.|+|+|+.+..
T Consensus 241 i~~V~vWTVNd~~~m~~l~~~GVDGIITD~P 271 (302)
T 3rlg_A 241 INKVYYWTVDKRSTTRDALDAGVDGIMTNYP 271 (302)
T ss_dssp CSEEEEECCCSHHHHHHHHHTTCSEEEESCH
T ss_pred eEEEEEEeCCCHHHHHHHHHcCCCEEECCCH
Confidence 48899999 6789999999999999998653
No 214
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=34.77 E-value=61 Score=29.66 Aligned_cols=110 Identities=17% Similarity=0.057 Sum_probs=64.9
Q ss_pred hhHHHHHHHhCccEEEEcccc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCC
Q 017962 22 KQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 95 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~ 95 (363)
-++...+.+.|++++=+-.++ .+..+.+.+- .=-|+..+|. |.++.++++ +.. ..+
T Consensus 68 ~~~A~~~~~~GA~~isvlt~~~~f~G~~~~l~~i~~~-v~lPvl~kdf---------------I~d~~qi~~-a~~-~GA 129 (254)
T 1vc4_A 68 VEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREA-VDLPLLRKDF---------------VVDPFMLEE-ARA-FGA 129 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHH-CCSCEEEESC---------------CCSHHHHHH-HHH-TTC
T ss_pred HHHHHHHHHcCCCEEEEecchhhhccCHHHHHHHHHh-cCCCEEECCc---------------CCCHHHHHH-HHH-cCC
Confidence 677888999999987664322 1222222211 0013222221 567766555 222 367
Q ss_pred ceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 96 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 96 ~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
+.|++...+-+ =-++.++.....-+-..+..++|.+|++ .+++.|+|=+=+.+.
T Consensus 130 D~VlL~~~~l~-~~l~~l~~~a~~lGl~~lvev~~~~E~~---~a~~~gad~IGvn~~ 183 (254)
T 1vc4_A 130 SAALLIVALLG-ELTGAYLEEARRLGLEALVEVHTERELE---IALEAGAEVLGINNR 183 (254)
T ss_dssp SEEEEEHHHHG-GGHHHHHHHHHHHTCEEEEEECSHHHHH---HHHHHTCSEEEEESB
T ss_pred CEEEECccchH-HHHHHHHHHHHHCCCeEEEEECCHHHHH---HHHHcCCCEEEEccc
Confidence 88888666444 3466666532223456789999999987 566778888777654
No 215
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=34.47 E-value=94 Score=23.98 Aligned_cols=81 Identities=17% Similarity=0.200 Sum_probs=45.2
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 155 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~--~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~ 155 (363)
...+.++.-..... ...+.+|++..-.. ..--.++..+.. ....++......+ ......+++.|+++++.+|-++
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~~~-~~~~~~~~~~g~~~~l~kp~~~ 112 (153)
T 3cz5_A 36 EAADAGEAYRLYRE-TTPDIVVMDLTLPG-PGGIEATRHIRQWDGAARILIFTMHQG-SAFALKAFEAGASGYVTKSSDP 112 (153)
T ss_dssp EESSHHHHHHHHHT-TCCSEEEECSCCSS-SCHHHHHHHHHHHCTTCCEEEEESCCS-HHHHHHHHHTTCSEEEETTSCT
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCeEEEEECCCC-HHHHHHHHHCCCcEEEecCCCH
Confidence 35555543332222 23677777332111 122233333322 2446666555433 4566788999999999999998
Q ss_pred HHHHHH
Q 017962 156 KAVLAL 161 (363)
Q Consensus 156 ~ei~~l 161 (363)
+++.+.
T Consensus 113 ~~L~~~ 118 (153)
T 3cz5_A 113 AELVQA 118 (153)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 877544
No 216
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=34.34 E-value=1.8e+02 Score=27.77 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=64.2
Q ss_pred cCCCCeeEEEEEecChhhhhhhccccCCCceE--------EEeCCCCeeeehhh-----hhhcccC-CCceEEEEcCCH-
Q 017962 67 DSGDRRVGSIIEVSTPQELQQLQPADGQAENI--------VIDLPDWQVIPAEN-----IVASFQG-SGKTVFAISKTP- 131 (363)
Q Consensus 67 ~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v--------vv~~~dW~iIPlEn-----liA~~q~-~~~~l~a~v~~~- 131 (363)
..+|.++..+..+.++++.+.+... .+|.| +++..+ .|-|. +...++. .+..++..+.|.
T Consensus 14 t~dg~~~~l~~n~~~p~~~~~a~~~--GadgVGL~RtE~l~ld~e~---~p~~~~q~~~~~~~~~~~~~~~v~VR~~d~g 88 (324)
T 2xz9_A 14 TPDGKKVMLAANIGTPKDVASALAN--GAEGVGLFRTEFLYMDRNS---LPSEEEQFEAYKEVVEKMGGRPVTIRTLDIG 88 (324)
T ss_dssp CTTSCEEEEEEEESSGGGHHHHHHT--TCSSEEEECCGGGTSSSSS---CCCHHHHHHHHHHHHHHTTTSCEEEECCCCB
T ss_pred ccCCCEEEEEEECCCHHHHHHHHhC--CCCeEeehhhhhhhccCCC---CCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 3568889999999999998776643 34544 554444 55543 3322221 233577777663
Q ss_pred ----------------------------------HHHHHHHHHhhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 017962 132 ----------------------------------SEAQIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDG 167 (363)
Q Consensus 132 ----------------------------------~eA~~~~~~LE~G~dGVvl~-~~d~~ei~~l~~~~~~ 167 (363)
.+.+..+.++..|.+||+++ .++++|+++++++++.
T Consensus 89 ~dk~~~~~~~~~E~nP~LG~RgiR~~l~~p~~~~~ql~Ai~ra~~~G~~~ImvPmV~s~~E~~~a~~~v~~ 159 (324)
T 2xz9_A 89 GDKELPYLDMPKEMNPFLGYRAIRLCLDRPDIFKTQLRAILRASAYGNVQIMYPMISSVEEVRKANSILEE 159 (324)
T ss_dssp GGGCCTTTCCCCCSCGGGSSBTHHHHHHCHHHHHHHHHHHHHHGGGSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred cchhhhhhccccccCcccccceeeeeccchhhHHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 24467888999999999885 4678998888887753
No 217
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=34.33 E-value=1e+02 Score=26.88 Aligned_cols=122 Identities=16% Similarity=0.245 Sum_probs=0.0
Q ss_pred hHHHHHHHhCccEEEEcccc---------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC
Q 017962 23 QVMTAAVERGWNTFVFLSEN---------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 93 (363)
Q Consensus 23 ~~vt~AlEsG~~~~v~~~~~---------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~ 93 (363)
+++..+.+.|++.+.+...+ .+..+++.+- .--|+++.++ |.++++.+.+...-
T Consensus 35 ~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~-~~iPvi~~Gg---------------i~~~~~~~~~~~~G- 97 (252)
T 1ka9_F 35 EAARAYDEAGADELVFLDISATHEERAILLDVVARVAER-VFIPLTVGGG---------------VRSLEDARKLLLSG- 97 (252)
T ss_dssp HHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTT-CCSCEEEESS---------------CCSHHHHHHHHHHT-
T ss_pred HHHHHHHHcCCCEEEEEcCCccccCccccHHHHHHHHHh-CCCCEEEECC---------------cCCHHHHHHHHHcC-
Q ss_pred CCceEEEeCCCCeeee----hhhhhhcccCCCceEEEEcCC-----------------HHHHHHHHHHhhcccCeEEEec
Q 017962 94 QAENIVIDLPDWQVIP----AENIVASFQGSGKTVFAISKT-----------------PSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIP----lEnliA~~q~~~~~l~a~v~~-----------------~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
++.+++ +-..++ ++.+...+......+-..+++ .+-.+.+..+.+.|++++++++
T Consensus 98 -ad~V~l---g~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~ 173 (252)
T 1ka9_F 98 -ADKVSV---NSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTS 173 (252)
T ss_dssp -CSEEEE---CHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEE
T ss_pred -CCEEEE---ChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcCCCEEEEec
Q ss_pred CC---------HHHHHHHHHhh
Q 017962 153 ED---------VKAVLALKEYF 165 (363)
Q Consensus 153 ~d---------~~ei~~l~~~~ 165 (363)
.+ .+.++++++.+
T Consensus 174 ~~~~g~~~g~~~~~i~~l~~~~ 195 (252)
T 1ka9_F 174 MDRDGTKEGYDLRLTRMVAEAV 195 (252)
T ss_dssp TTTTTTCSCCCHHHHHHHHHHC
T ss_pred ccCCCCcCCCCHHHHHHHHHHc
No 218
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=33.43 E-value=42 Score=26.09 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=28.6
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++......+ ...+..+++.|+++.+.+|-+++++.+.
T Consensus 91 ~~piiils~~~~-~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 130 (149)
T 1i3c_A 91 RIPVVVLTTSHN-EDDVIASYELHVNCYLTKSRNLKDLFKM 130 (149)
T ss_dssp TSCEEEEESCCC-HHHHHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCeEEEEECCCC-hHHHHHHHHcCCcEEEECCCCHHHHHHH
Confidence 345665554433 3446688899999999999999887654
No 219
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=33.13 E-value=37 Score=29.36 Aligned_cols=102 Identities=15% Similarity=0.181 Sum_probs=57.5
Q ss_pred eeeEEEEEEEEEcCCcc-eEEEeecC-----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeee-----ecCCcee
Q 017962 176 SLMKATVTRVDVAGMGD-RVCVDLCS-----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRV-----NAGPVHA 244 (363)
Q Consensus 176 ~L~~atVt~V~~vGmGd-RVCVDtcs-----ll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRV-----NAGaVHa 244 (363)
...+++|++++.+.-+- ++.+..-. -+.||+=+.+- +... ..-..|||.+ +.|-+.=
T Consensus 10 ~~~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~~pGq~v~l~--------~~~~----g~~~~R~ysi~s~~~~~~~~~l 77 (243)
T 2eix_A 10 EYKKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVK--------ATVD----GKEIYRPYTPVSSDDEKGYFDL 77 (243)
T ss_dssp SCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEE--------EEET----TEEEEEEECCCSCTTCCSEEEE
T ss_pred ceEEEEEEEEEEeCCCeEEEEEEcCCCCcccCcCCceEEEEE--------EeeC----CCEEEeeeeecCCCCCCCEEEE
Confidence 45678999999886553 34444322 23555533221 1111 0112344443 2344555
Q ss_pred EEEe-c-CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 245 YVLV-P-GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 245 Yv~~-p-ggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
++.. | |.-|+||+.|+.||+|.+....|+...- .-..+|++||=+
T Consensus 78 ~vk~~~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~-----~~~~~~~vliag 124 (243)
T 2eix_A 78 IIKVYEKGQMSQYIDHLNPGDFLQVRGPKGQFDYK-----PNMVKEMGMIAG 124 (243)
T ss_dssp EEECCTTCHHHHHHHTCCTTCEEEEEEEECSCCCC-----TTSSSEEEEEEE
T ss_pred EEEEcCCCCcchHhhcCCCCCEEEEECCeEEEEeC-----CCCCcEEEEEec
Confidence 5555 3 4479999999999999998877763211 001467777755
No 220
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=32.69 E-value=50 Score=25.02 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=29.3
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~-d~~ei~~l 161 (363)
...++...... +......+++.|+++++.+|- +++++.+.
T Consensus 86 ~~~ii~ls~~~-~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~ 126 (137)
T 2pln_A 86 SIVVLVSSDNP-TSEEEVHAFEQGADDYIAKPYRSIKALVAR 126 (137)
T ss_dssp TSEEEEEESSC-CHHHHHHHHHTTCSEEEESSCSCHHHHHHH
T ss_pred CccEEEEeCCC-CHHHHHHHHHcCCceeeeCCCCCHHHHHHH
Confidence 45566655443 345667889999999999999 99887544
No 221
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=32.40 E-value=49 Score=24.83 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=28.0
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 160 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~ 160 (363)
+..++...... +......+++.|+++.+.+|-+++++.+
T Consensus 76 ~~pii~~s~~~-~~~~~~~~~~~Ga~~~l~KP~~~~~L~~ 114 (122)
T 3gl9_A 76 RIPVIVLTAKG-GEEDESLALSLGARKVMRKPFSPSQFIE 114 (122)
T ss_dssp TSCEEEEESCC-SHHHHHHHHHTTCSEEEESSCCHHHHHH
T ss_pred CCCEEEEecCC-chHHHHHHHhcChhhhccCCCCHHHHHH
Confidence 34566555433 3345567899999999999999987754
No 222
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=32.33 E-value=30 Score=32.03 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=31.3
Q ss_pred hhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 111 ENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 111 EnliA~~q~~~~~l~a~-v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..+|++++..+-+|++- +++.++++.+ ++.|+|||+ ||+|+.++++
T Consensus 258 ~~~v~~~~~~Gl~V~~WTVn~~~~~~~l---~~~GVDgIi--TD~P~~~~~~ 304 (313)
T 3l12_A 258 PELVAEAHDLGLIVLTWTVNEPEDIRRM---ATTGVDGIV--TDYPGRTQRI 304 (313)
T ss_dssp HHHHHHHHHTTCEEEEBCCCSHHHHHHH---HHHTCSEEE--ESCHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHH---HHcCCCEEE--eCCHHHHHHH
Confidence 35566666565566553 6777766655 578999998 7889876443
No 223
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=31.82 E-value=44 Score=24.75 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=29.0
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++...... +......+++.|+++.+.+|-+++++.+.
T Consensus 75 ~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 114 (124)
T 1srr_A 75 NIRVIIMTAYG-ELDMIQESKELGALTHFAKPFDIDEIRDA 114 (124)
T ss_dssp TCEEEEEESSC-CHHHHHHHHHHTCCCEEESSCCHHHHHHH
T ss_pred CCCEEEEEccC-chHHHHHHHhcChHhhccCCCCHHHHHHH
Confidence 45666554433 34556788899999999999999887544
No 224
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=31.46 E-value=3.1e+02 Score=25.15 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=22.9
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
+..++..+.+.+||..+ ++.|+|-|.+.
T Consensus 125 g~~v~~~~~~~~e~~~a---~~~Gad~V~~~ 152 (305)
T 2nv1_A 125 TVPFVCGCRDLGEATRR---IAEGASMLRTK 152 (305)
T ss_dssp SSCEEEEESSHHHHHHH---HHTTCSEEEEC
T ss_pred CCcEEEEeCCHHHHHHH---HHCCCCEEEec
Confidence 45789999999998766 48899998883
No 225
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Probab=31.44 E-value=93 Score=29.52 Aligned_cols=130 Identities=12% Similarity=0.163 Sum_probs=62.7
Q ss_pred EEEEEe--CchhHHHHHHHhCccEEEEcccch----hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChh----
Q 017962 14 RVWIWT--ESKQVMTAAVERGWNTFVFLSENQ----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQ---- 83 (363)
Q Consensus 14 ~vWvw~--~~K~~vt~AlEsG~~~~v~~~~~~----~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e---- 83 (363)
.-|++. .+.+.+..|..+|+|.++++-||. ++......+.. . +... +..+.. .++.|.+.+
T Consensus 46 Rs~L~vP~~~p~~~eka~~~gaD~vilDLEDaV~~~~k~~Ar~~l~~--~--l~~~---~~~~~~--~~VRVn~~~t~~~ 116 (316)
T 3qll_A 46 RSWLFTPATRSDRFAKAAENGADVAIIDLEDSVSQADKEQARQKAIS--Y--LSSR---PATSLP--LALRINGLDTRAG 116 (316)
T ss_dssp CEEEEEESCC----------CCSEEEEECSTTSCGGGHHHHHHHHHC----------------CC--EEEECCCTTSHHH
T ss_pred cEEEECCCCCHHHHHHHhhCCCCEEEEeCCCCCCCcCHHHHHHHHHH--H--Hhcc---cccCCe--EEEEECCCCCchh
Confidence 467775 568899999999999999997763 22211111100 0 0000 001222 455565532
Q ss_pred --hhhhhccccCCCceEEEeCCCCeeeehhh---hhhcccC--CCceEEEEcCCHHHHHHHHHHhh--cccCeEEEecCC
Q 017962 84 --ELQQLQPADGQAENIVIDLPDWQVIPAEN---IVASFQG--SGKTVFAISKTPSEAQIFLEALE--QGLGGIVLKVED 154 (363)
Q Consensus 84 --~~e~~~~~~~~~~~vvv~~~dW~iIPlEn---liA~~q~--~~~~l~a~v~~~~eA~~~~~~LE--~G~dGVvl~~~d 154 (363)
|+..+.......+.+++ +++=-.|+ +.+.+.. .+..+++.+.|++-..-+-+++. -|+||+.+-+.|
T Consensus 117 ~~Dl~~~l~~g~~~~gIvl----PKvesa~~v~~~~~~l~~~~~~~~l~~~IET~~gv~~~~eIa~a~~~v~~l~~G~~D 192 (316)
T 3qll_A 117 IEDIHALLECGSLPDYLVL----PKTESAAHLQILDRLMMFAGSDTRLIGIIESVRGLNAVESIAAATPKLAGLIFGAAD 192 (316)
T ss_dssp HHHHHHHHHSCCCCSEEEE----TTCCSHHHHHHHHHHTSCC--CCEEEEEECSHHHHHTHHHHHTSCTTEEEEEECHHH
T ss_pred HHHHHHHHhCCCCCCEEEe----CCCCCHHHHHHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHHHhcCCCceEEEECHHH
Confidence 34433322111255555 22222222 2333321 25679999999998888888887 399999998887
Q ss_pred HH
Q 017962 155 VK 156 (363)
Q Consensus 155 ~~ 156 (363)
..
T Consensus 193 L~ 194 (316)
T 3qll_A 193 MA 194 (316)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 226
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=31.32 E-value=1.2e+02 Score=30.16 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=64.5
Q ss_pred CchhHHHHHHHhCccEEEEcccc--h----hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC
Q 017962 20 ESKQVMTAAVERGWNTFVFLSEN--Q----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 93 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~~--~----~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~ 93 (363)
+..+.+..+++.|+|.+.+...+ . +..+.+.+.. | +.++. ...+.+.++...+.. .
T Consensus 255 ~~~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~---~------------~~pvi-~~~v~t~~~a~~l~~--a 316 (514)
T 1jcn_A 255 DDKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKY---P------------HLQVI-GGNVVTAAQAKNLID--A 316 (514)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHC---T------------TCEEE-EEEECSHHHHHHHHH--H
T ss_pred hhHHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhC---C------------CCceE-ecccchHHHHHHHHH--c
Confidence 34678888999999999884321 1 2222222210 0 22221 125778877555443 2
Q ss_pred CCceEEEeCC-----------CCe---eeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 94 QAENIVIDLP-----------DWQ---VIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 94 ~~~~vvv~~~-----------dW~---iIPlEnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
.++.+++... +|- ...++.+-+..+..+..|++ .+++..++..++. .|+|+|.+-..
T Consensus 317 Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala---~GAd~V~iG~~ 389 (514)
T 1jcn_A 317 GVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALA---LGASTVMMGSL 389 (514)
T ss_dssp TCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHH---TTCSEEEESTT
T ss_pred CCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHH---cCCCeeeECHH
Confidence 4788888320 132 22233333332333557888 7888888876654 69999998764
No 227
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=31.25 E-value=84 Score=29.74 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=16.3
Q ss_pred Cceeeeeecc-CCCeEEEEcCCCCeeEE
Q 017962 251 GKTCYLSELK-SGKEVIVVDQKGRQRTA 277 (363)
Q Consensus 251 gkT~YLSEL~-sG~eVLvVd~~G~~R~~ 277 (363)
|....|.|+= .|+++||++..|..|.+
T Consensus 159 Gev~tv~E~l~d~~R~lV~~~~~eerVv 186 (251)
T 3m9b_A 159 GEISTLREILADGHRALVVGHADEERVV 186 (251)
T ss_dssp SEEEEEEEECTTSSEEEEECSSSCEEEE
T ss_pred ccEEEEEEEecCCCEEEEecCCCceEEE
Confidence 4455666665 44566666666666555
No 228
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=31.23 E-value=1.3e+02 Score=29.36 Aligned_cols=119 Identities=15% Similarity=0.073 Sum_probs=61.1
Q ss_pred CchhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEE
Q 017962 20 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 99 (363)
Q Consensus 20 ~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vv 99 (363)
...+.+..+++.|+|.+.++..+-....-|..+.+++- ..+ +.++.. ..+.++++...+.. ..+|.|+
T Consensus 100 ~~~e~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~-------~~~--~~~Vi~-G~V~T~e~A~~a~~--aGaD~I~ 167 (361)
T 3r2g_A 100 NELQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQ-------LLG--SRCIMA-GNVATYAGADYLAS--CGADIIK 167 (361)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHH-------HHT--TCEEEE-EEECSHHHHHHHHH--TTCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHH-------hcC--CCeEEE-cCcCCHHHHHHHHH--cCCCEEE
Confidence 35788999999999987775322000000111111110 000 222211 25788887554432 3689998
Q ss_pred EeCC---CCe-------eeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 100 IDLP---DWQ-------VIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 100 v~~~---dW~-------iIPlEnliA~~q~~~~~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
+... -|+ -+|.=..|.+.-.....|++ .+.+..++..+ |..|+|+|.+-+-
T Consensus 168 Vg~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~PVIAdGGI~~~~di~kA---La~GAd~V~iGr~ 230 (361)
T 3r2g_A 168 AGIGGGSVCSTRIKTGFGVPMLTCIQDCSRADRSIVADGGIKTSGDIVKA---LAFGADFVMIGGM 230 (361)
T ss_dssp ECCSSSSCHHHHHHHCCCCCHHHHHHHHTTSSSEEEEESCCCSHHHHHHH---HHTTCSEEEESGG
T ss_pred EcCCCCcCccccccCCccHHHHHHHHHHHHhCCCEEEECCCCCHHHHHHH---HHcCCCEEEEChH
Confidence 8322 111 13422223222222126776 56777776655 5579999998754
No 229
>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}
Probab=31.14 E-value=15 Score=34.56 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=25.6
Q ss_pred CCceeeeeecCCCCEEEEEecC---CCcccceeee
Q 017962 326 QEKAIPVTSLKVGDEVLLRVQG---AARHTGIEIQ 357 (363)
Q Consensus 326 ~g~~vsVt~Lk~GD~VL~~~~~---~gRHfG~~I~ 357 (363)
.|.+|+..+|+|||.|...... ...|+||=+.
T Consensus 241 ~g~~v~~~~~~pGDlvff~~~~~~~~~~HVgiy~G 275 (311)
T 3h41_A 241 NGVAVDKEHLQKGDLIFFAHDQGKGSVHHVAMYIG 275 (311)
T ss_dssp SSEEECGGGCCTTCEEEEEHHHHTSCEEEEEEEEE
T ss_pred CCEEEcHHHCCCCCEEEEecCCCCCCCcEEEEEEe
Confidence 3788999999999999988643 2359999884
No 230
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=31.02 E-value=58 Score=25.97 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=24.9
Q ss_pred ceEEEEcCCH-HHHHHHHHHhhcccCeEEEecCC
Q 017962 122 KTVFAISKTP-SEAQIFLEALEQGLGGIVLKVED 154 (363)
Q Consensus 122 ~~l~a~v~~~-~eA~~~~~~LE~G~dGVvl~~~d 154 (363)
..++...... ++......+++.|+++++.+|-+
T Consensus 99 ~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~ 132 (164)
T 3t8y_A 99 TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHG 132 (164)
T ss_dssp CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSS
T ss_pred ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCC
Confidence 4565555533 33567788999999999999998
No 231
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Probab=31.01 E-value=24 Score=36.63 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=42.4
Q ss_pred CeeeecCCceeE----EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccce
Q 017962 234 PFRVNAGPVHAY----VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 289 (363)
Q Consensus 234 PFRVNAGaVHaY----v~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPL 289 (363)
-..|+.||+.+- -++|.|=+..=.+.+.||.|.|+|.+|+ .+-+|++..-..-|
T Consensus 509 ~v~VD~gA~~av~~GasLl~~GV~~~~g~f~~Gd~V~V~~~~g~--~ia~G~a~~ss~ei 566 (582)
T 1iq8_A 509 RVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDE--LLATGQALLSGREM 566 (582)
T ss_dssp EEEECTTTHHHHHTTCCEEGGGEEEECTTCCTTCEEEEECTTCC--EEEEEEESSCHHHH
T ss_pred EEEECchHHHHHhcCCCcCCCceEecCCCcCCCCEEEEEeCCCC--EEEEEEEeeCHHHH
Confidence 378999988663 4567778888889999999999999885 48889888654433
No 232
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=30.76 E-value=1.8e+02 Score=24.90 Aligned_cols=114 Identities=24% Similarity=0.223 Sum_probs=63.4
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeee-e-cCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCceE
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLF-I-KEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENI 98 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~-~-~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~~~~~~~v 98 (363)
.+++..+.+.|++.+.+.. .+..+++.+..-+ |+. . ... +++.+ . -+. +.++++.+.. ..++.+
T Consensus 26 ~~~a~~~~~~Ga~~i~~~~--~~~i~~i~~~~~~-pv~~~~~~~--~~~~~----~--~i~~~~~~i~~~~~--~Gad~v 92 (223)
T 1y0e_A 26 SKMALAAYEGGAVGIRANT--KEDILAIKETVDL-PVIGIVKRD--YDHSD----V--FITATSKEVDELIE--SQCEVI 92 (223)
T ss_dssp HHHHHHHHHHTCSEEEEES--HHHHHHHHHHCCS-CEEEECBCC--CTTCC----C--CBSCSHHHHHHHHH--HTCSEE
T ss_pred HHHHHHHHHCCCeeeccCC--HHHHHHHHHhcCC-CEEeeeccC--CCccc----c--ccCCcHHHHHHHHh--CCCCEE
Confidence 5778888899999987753 3444444332211 211 0 000 00001 1 122 3344443322 257888
Q ss_pred EEeCCCCee--eehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 99 VIDLPDWQV--IPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 99 vv~~~dW~i--IPlEnliA~~q~~--~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
.+....-.- -+++.++..+... +..++..+.+.+|++. +.+.|+|.|.+.
T Consensus 93 ~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~t~~e~~~---~~~~G~d~i~~~ 146 (223)
T 1y0e_A 93 ALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKN---AARLGFDYIGTT 146 (223)
T ss_dssp EEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHH---HHHTTCSEEECT
T ss_pred EEeeecccCcccCHHHHHHHHHHhCCCceEEecCCCHHHHHH---HHHcCCCEEEeC
Confidence 886653211 2456666665543 5577888999999765 678999998764
No 233
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=30.74 E-value=1.2e+02 Score=29.09 Aligned_cols=29 Identities=14% Similarity=-0.168 Sum_probs=24.5
Q ss_pred EEEEEeCchhHHHHHHHhCccEEEEcccc
Q 017962 14 RVWIWTESKQVMTAAVERGWNTFVFLSEN 42 (363)
Q Consensus 14 ~vWvw~~~K~~vt~AlEsG~~~~v~~~~~ 42 (363)
.+|+...+.+.+..|..+|+|.++++-+|
T Consensus 45 g~~l~i~~p~~~e~a~~~GaD~vilDlEh 73 (339)
T 1izc_A 45 GVAHGIPSTFVTKVLAATKPDFVWIDVEH 73 (339)
T ss_dssp EEEECSCCHHHHHHHHHTCCSEEEEETTT
T ss_pred EEEEECCCHHHHHHHHhCCCCEEEEECCC
Confidence 45776778999999999999999988765
No 234
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=30.67 E-value=54 Score=25.13 Aligned_cols=43 Identities=9% Similarity=0.186 Sum_probs=29.7
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH-HHhh
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL-KEYF 165 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l-~~~~ 165 (363)
..++..... .+......+++.|+++.+.+|-+++++... +.++
T Consensus 79 ~pii~~t~~-~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l 122 (136)
T 3t6k_A 79 LPILMLTAQ-GDISAKIAGFEAGANDYLAKPFEPQELVYRVKNIL 122 (136)
T ss_dssp CCEEEEECT-TCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHH
T ss_pred ccEEEEecC-CCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 345554444 344456788999999999999999887643 3344
No 235
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=30.39 E-value=51 Score=25.52 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=28.5
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++......+ ......+++.|+++++.+|-+++++.+.
T Consensus 89 ~~pii~~t~~~~-~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 128 (152)
T 3heb_A 89 RSPVVILTTTDD-QREIQRCYDLGANVYITKPVNYENFANA 128 (152)
T ss_dssp TSCEEEEESCCC-HHHHHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCCEEEEecCCC-HHHHHHHHHCCCcEEEeCCCCHHHHHHH
Confidence 445665554443 3445678899999999999999877544
No 236
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=30.30 E-value=33 Score=30.14 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=36.6
Q ss_pred CceEEEeCCCCeeeehhhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHH
Q 017962 95 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAV 158 (363)
Q Consensus 95 ~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~-v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei 158 (363)
++.+-+ +|..++ +.+++.++..+-++++. +++.++++.+ ++.|+|||+ ||+|+.+
T Consensus 164 ~~~i~~---~~~~~~-~~~v~~~~~~G~~v~~wtvn~~~~~~~l---~~~GvdgI~--TD~p~~~ 219 (224)
T 1vd6_A 164 VEAVHP---HHALVT-EEAVAGWRKRGLFVVAWTVNEEGEARRL---LALGLDGLI--GDRPEVL 219 (224)
T ss_dssp CSEEEE---BGGGCC-HHHHHHHHHTTCEEEEECCCCHHHHHHH---HHTTCSEEE--ESCHHHH
T ss_pred CcEEec---CcccCC-HHHHHHHHHCCCEEEEEeCCCHHHHHHH---HhcCCCEEE--cCCHHHH
Confidence 445544 344444 56777777666666654 6777776654 689999996 8888765
No 237
>1q5x_A Regulator of RNAse E activity A; 3-layer sandwich, alpha-beta structure, parallel beta sheet, antiparallel beta sheet, hydrolase inhibitor; 2.00A {Escherichia coli} SCOP: c.8.7.1
Probab=30.25 E-value=12 Score=32.39 Aligned_cols=28 Identities=36% Similarity=0.452 Sum_probs=24.1
Q ss_pred eeeeeccCCCeEEEEcCCCCeeEEeeeeE
Q 017962 254 CYLSELKSGKEVIVVDQKGRQRTAVVGRV 282 (363)
Q Consensus 254 ~YLSEL~sG~eVLvVd~~G~~R~~~VGRv 282 (363)
.+|.++..|| ||++|..|..+.++.|-.
T Consensus 50 ~al~~~~~G~-VlVvd~~g~~~~a~~G~~ 77 (161)
T 1q5x_A 50 DLLEQNGRGR-VLVVDGGGSVRRALVDAE 77 (161)
T ss_dssp HHHTSCCTTE-EEEEECTTCSSSEEECHH
T ss_pred HHHhhcCCCC-EEEEECCCCCCceeehHH
Confidence 5788888887 999999999999998854
No 238
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=30.12 E-value=67 Score=30.44 Aligned_cols=51 Identities=16% Similarity=0.351 Sum_probs=38.0
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
+.+.|.+.+.+ |...++.++...+..++..+.+.++|+. +.+.|+|.|++.
T Consensus 122 g~~~V~~~~g~----~~~~~i~~~~~~g~~v~~~v~t~~~a~~---a~~~GaD~i~v~ 172 (369)
T 3bw2_A 122 PVPVVSFHFGV----PDREVIARLRRAGTLTLVTATTPEEARA---VEAAGADAVIAQ 172 (369)
T ss_dssp CCSEEEEESSC----CCHHHHHHHHHTTCEEEEEESSHHHHHH---HHHTTCSEEEEE
T ss_pred CCCEEEEeCCC----CcHHHHHHHHHCCCeEEEECCCHHHHHH---HHHcCCCEEEEe
Confidence 57788887654 3345666665566789999999998874 457899999994
No 239
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=30.10 E-value=98 Score=26.89 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=16.2
Q ss_pred hhHHHHHHHhCccEEEEccc
Q 017962 22 KQVMTAAVERGWNTFVFLSE 41 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~ 41 (363)
.+.+..|.+.|+|.+.+..+
T Consensus 81 ~~~v~~~~~~Gad~v~vh~~ 100 (230)
T 1rpx_A 81 DQRVPDFIKAGADIVSVHCE 100 (230)
T ss_dssp HHHHHHHHHTTCSEEEEECS
T ss_pred HHHHHHHHHcCCCEEEEEec
Confidence 45788899999999887764
No 240
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=29.68 E-value=54 Score=25.79 Aligned_cols=40 Identities=25% Similarity=0.266 Sum_probs=29.1
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++...... +......+++.|+++++.+|-++.++.+.
T Consensus 111 ~~~ii~ls~~~-~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 150 (157)
T 3hzh_A 111 NARVIMISALG-KEQLVKDCLIKGAKTFIVKPLDRAKVLQR 150 (157)
T ss_dssp TCCEEEEESCC-CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCcEEEEeccC-cHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 45666655543 33456788999999999999999877543
No 241
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=29.46 E-value=1.1e+02 Score=26.97 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=57.0
Q ss_pred HHHHHHhCccEEEEcccc----hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEE
Q 017962 25 MTAAVERGWNTFVFLSEN----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 25 vt~AlEsG~~~~v~~~~~----~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 100 (363)
+..+.+.|+|.+++...+ .+..+++-.. ....|.. ..+.+.+.++++++... ..+++-+
T Consensus 75 ~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~-------------a~~~Gl~--~iv~v~~~~e~~~~~~~--~~~~i~~ 137 (219)
T 2h6r_A 75 AEAIKDCGCKGTLINHSEKRMLLADIEAVINK-------------CKNLGLE--TIVCTNNINTSKAVAAL--SPDCIAV 137 (219)
T ss_dssp HHHHHHHTCCEEEESBTTBCCBHHHHHHHHHH-------------HHHHTCE--EEEEESSSHHHHHHTTT--CCSEEEE
T ss_pred HHHHHHcCCCEEEECCccccCCHHHHHHHHHH-------------HHHCCCe--EEEEeCCchHHHHHHhC--CCCEEEE
Confidence 678899999999995421 1111111111 0111332 34466666665554432 2345545
Q ss_pred eCCCCe---------eee--hhhhhhcccCC--CceEEEE--cCCHHHHHHHHHHhhcccCeEEEe-----cCCHHHH
Q 017962 101 DLPDWQ---------VIP--AENIVASFQGS--GKTVFAI--SKTPSEAQIFLEALEQGLGGIVLK-----VEDVKAV 158 (363)
Q Consensus 101 ~~~dW~---------iIP--lEnliA~~q~~--~~~l~a~--v~~~~eA~~~~~~LE~G~dGVvl~-----~~d~~ei 158 (363)
+. -|- -.| ++..++.+..- +..+++. +++.++++. ..+.|+||+++- ++|+.++
T Consensus 138 ~~-~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~---~~~~gaDgvlVGsAi~~~~d~~~~ 211 (219)
T 2h6r_A 138 EP-PELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKA---ALDLGAEGVLLASGVVKAKNVEEA 211 (219)
T ss_dssp CC-CC--------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHH---HHTTTCCCEEESHHHHTCSSHHHH
T ss_pred Ee-ccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHH---HhhCCCCEEEEcHHHhCcccHHHH
Confidence 43 452 112 34444433221 3344443 466676665 467899999974 5666543
No 242
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=29.41 E-value=12 Score=33.46 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=30.1
Q ss_pred cCC-ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 249 PGG-KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 249 pgg-kT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
++| -|+||.+|+.||+|.+-...|+.... -..+|++||=+
T Consensus 124 ~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~------~~~~~~vliag 164 (290)
T 2r6h_A 124 KPGISSSYIFSLKPGDKVMMSGPYGDFHIQ------DTDAEMLYIGG 164 (290)
T ss_dssp CCCHHHHHHTTCCTTCEEEEEEEECCCCCC------SSSCEEEEEEE
T ss_pred CCcchhhHHhcCCCCCEEEEEecccCCcCC------CCCCeEEEEEC
Confidence 344 58999999999999998888876421 13578888855
No 243
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=29.38 E-value=68 Score=27.24 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=38.3
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccCC-CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQGS-GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 163 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~~-~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~ 163 (363)
..+.++++..-.. ..--.++..+... ...++......+ ......+++.|++|.+.+|-+++++.+.-.
T Consensus 49 ~~dlvilD~~l~~-~~g~~~~~~lr~~~~~~ii~lt~~~~-~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~ 117 (238)
T 2gwr_A 49 RPDLVLLDLMLPG-MNGIDVCRVLRADSGVPIVMLTAKTD-TVDVVLGLESGADDYIMKPFKPKELVARVR 117 (238)
T ss_dssp CCSEEEEESSCSS-SCHHHHHHHHHTTCCCCEEEEEETTC-CSCHHHHHHTTCCEEEEESCCHHHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhCCCCcEEEEeCCCC-HHHHHHHHHCCCCEEEeCCCCHHHHHHHHH
Confidence 4577777543111 1112233333322 345555443332 234567789999999999999988765433
No 244
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=29.23 E-value=84 Score=28.25 Aligned_cols=124 Identities=16% Similarity=0.161 Sum_probs=64.7
Q ss_pred hhHHHHHHHhCccEEEEcccchh-hhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEE
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQ-LAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~-~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 100 (363)
.+.+..+.+.|+|.+.|..+.-+ ..+.+. .+++.|.+++..+.-.++ ++.+.......|+|++
T Consensus 77 ~~~i~~~~~aGad~itvH~Ea~~~~~~~i~--------------~i~~~G~k~gval~p~t~--~e~l~~~l~~~D~Vl~ 140 (228)
T 3ovp_A 77 EQWVKPMAVAGANQYTFHLEATENPGALIK--------------DIRENGMKVGLAIKPGTS--VEYLAPWANQIDMALV 140 (228)
T ss_dssp GGGHHHHHHHTCSEEEEEGGGCSCHHHHHH--------------HHHHTTCEEEEEECTTSC--GGGTGGGGGGCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEccCCchhHHHHHH--------------HHHHcCCCEEEEEcCCCC--HHHHHHHhccCCeEEE
Confidence 45678899999999888764211 111111 122335565554333333 2344444445788876
Q ss_pred eCC-----CCeeee-----hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe-----cCCHH-HHHHHHHh
Q 017962 101 DLP-----DWQVIP-----AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK-----VEDVK-AVLALKEY 164 (363)
Q Consensus 101 ~~~-----dW~iIP-----lEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~-----~~d~~-ei~~l~~~ 164 (363)
-.- +-+.|| +..+-+... + ..+.+.--.. .+.+-.+.+.|+|++|.- .+||. .++++++.
T Consensus 141 msv~pGf~Gq~f~~~~l~ki~~lr~~~~--~-~~I~VdGGI~-~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l~~~ 216 (228)
T 3ovp_A 141 MTVEPGFGGQKFMEDMMPKVHWLRTQFP--S-LDIEVDGGVG-PDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNV 216 (228)
T ss_dssp ESSCTTTCSCCCCGGGHHHHHHHHHHCT--T-CEEEEESSCS-TTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHHHHHH
T ss_pred eeecCCCCCcccCHHHHHHHHHHHHhcC--C-CCEEEeCCcC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHH
Confidence 332 334566 222222211 1 2233332222 355566789999999874 46774 46666665
Q ss_pred h
Q 017962 165 F 165 (363)
Q Consensus 165 ~ 165 (363)
+
T Consensus 217 ~ 217 (228)
T 3ovp_A 217 C 217 (228)
T ss_dssp H
T ss_pred H
Confidence 4
No 245
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=29.23 E-value=76 Score=24.04 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=27.9
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++...... +......+++.|+++++.+|-+++++.+.
T Consensus 76 ~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 115 (140)
T 3n53_A 76 NVPLILLFSSE-HKEAIVNGLHSGADDYLTKPFNRNDLLSR 115 (140)
T ss_dssp TCCEEEEECC-----CTTTTTTCCCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEecCC-CHHHHHHHHhcCCCeeeeCCCCHHHHHHH
Confidence 45566655543 34556778999999999999999887654
No 246
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=29.22 E-value=59 Score=32.76 Aligned_cols=145 Identities=17% Similarity=0.224 Sum_probs=62.9
Q ss_pred CCCceEEEeCCCCeeeehhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEEEe----------------cC
Q 017962 93 GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK----------------VE 153 (363)
Q Consensus 93 ~~~~~vvv~~~dW~iIPlEnliA~~q~~--~~~l~a-~v~~~~eA~~~~~~LE~G~dGVvl~----------------~~ 153 (363)
..++.++++..+..-..+.++|.++... +..+++ .+.+.++|+.+. +.|+|+|++. ..
T Consensus 267 aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~---~aGad~i~vg~g~gsi~~~~~~~g~g~p 343 (511)
T 3usb_A 267 ASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALI---EAGANVVKVGIGPGSICTTRVVAGVGVP 343 (511)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHH---HHTCSEEEECSSCSTTCCHHHHHCCCCC
T ss_pred hccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHH---HhCCCEEEECCCCccccccccccCCCCC
Confidence 4589999987765444455666665432 234554 888888887755 5699999972 22
Q ss_pred CHHHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCC-CCceEEEeccCceEEEEeeccccC-CCCC
Q 017962 154 DVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMR-PGEGLLVGSFARGLFLVHSECLES-NYIA 231 (363)
Q Consensus 154 d~~ei~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~-~GEGmLVGs~s~glfLVhsEt~e~-~Yva 231 (363)
+...+.++.+.+... .+++ |-.=|+.+-- |..-.|. --.|..+|+ +|+-..|+-.. -|..
T Consensus 344 ~~~~l~~v~~~~~~~-----~iPV-------Ia~GGI~~~~--di~kala~GA~~V~vGs----~~~~~~es~g~~~~~~ 405 (511)
T 3usb_A 344 QLTAVYDCATEARKH-----GIPV-------IADGGIKYSG--DMVKALAAGAHVVMLGS----MFAGVAESPGETEIYQ 405 (511)
T ss_dssp HHHHHHHHHHHHHTT-----TCCE-------EEESCCCSHH--HHHHHHHTTCSEEEEST----TTTTBTTSSSCEEECS
T ss_pred cHHHHHHHHHHHHhC-----CCcE-------EEeCCCCCHH--HHHHHHHhCchhheecH----HHhcCccCchhhhhcc
Confidence 233444444433211 1111 1111322110 1111111 246788887 34434443211 1456
Q ss_pred CCCeeeecCCceeEEEecCCceeeeee
Q 017962 232 SRPFRVNAGPVHAYVLVPGGKTCYLSE 258 (363)
Q Consensus 232 ~RPFRVNAGaVHaYv~~pggkT~YLSE 258 (363)
-|.|...=|---.-.+.-+.++||.++
T Consensus 406 g~~~k~~~gm~s~~a~~~~~~~r~~~~ 432 (511)
T 3usb_A 406 GRQFKVYRGMGSVGAMEKGSKDRYFQE 432 (511)
T ss_dssp SSEEEC---------------------
T ss_pred CeeeeeeeccccHHHHhcccccchhcc
Confidence 677776655443333345778889876
No 247
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=28.66 E-value=91 Score=25.53 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=44.0
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 155 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q--~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~ 155 (363)
...+.++.-.... ....+.++++..-.. ..--.++..+. .....++......+ ......+++.|+++.+.+|-++
T Consensus 33 ~~~~~~~al~~~~-~~~~dlvl~D~~lp~-~~g~~~~~~l~~~~~~~~ii~ls~~~~-~~~~~~a~~~Ga~~~l~Kp~~~ 109 (208)
T 1yio_A 33 TFDCASTFLEHRR-PEQHGCLVLDMRMPG-MSGIELQEQLTAISDGIPIVFITAHGD-IPMTVRAMKAGAIEFLPKPFEE 109 (208)
T ss_dssp EESSHHHHHHHCC-TTSCEEEEEESCCSS-SCHHHHHHHHHHTTCCCCEEEEESCTT-SCCCHHHHHTTEEEEEESSCCH
T ss_pred EcCCHHHHHHhhh-ccCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCCEEEEeCCCC-HHHHHHHHHCCCcEEEeCCCCH
Confidence 3555554333222 123566777432111 11112333332 23455666554433 3455678899999999999999
Q ss_pred HHHHHH
Q 017962 156 KAVLAL 161 (363)
Q Consensus 156 ~ei~~l 161 (363)
+++.+.
T Consensus 110 ~~L~~~ 115 (208)
T 1yio_A 110 QALLDA 115 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887543
No 248
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Probab=28.54 E-value=24 Score=32.19 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=23.1
Q ss_pred CceeeeeecCCCCEEEEEecCCCcccceeee
Q 017962 327 EKAIPVTSLKVGDEVLLRVQGAARHTGIEIQ 357 (363)
Q Consensus 327 g~~vsVt~Lk~GD~VL~~~~~~gRHfG~~I~ 357 (363)
++.|+..+|+|||-|+... ....|+||=+.
T Consensus 151 g~~V~~~~lqpGDLVff~~-g~~~HVgIYlG 180 (214)
T 3pbi_A 151 GRHVPPAEAKRGDLIFYGP-GGGQHVTLYLG 180 (214)
T ss_dssp SEEECGGGCCTTCEEEESG-GGCSEEEEEEE
T ss_pred CeeechhhCCCCCEEEecC-CCCCEEEEEec
Confidence 5678889999999887642 33579999874
No 249
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=28.44 E-value=2.5e+02 Score=26.65 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=50.0
Q ss_pred CCceEEEeCCCC----------eeeehhhhhhcc-------cCCCceEEEEcCCHH-----HH-HHHHHHhhcccCeEEE
Q 017962 94 QAENIVIDLPDW----------QVIPAENIVASF-------QGSGKTVFAISKTPS-----EA-QIFLEALEQGLGGIVL 150 (363)
Q Consensus 94 ~~~~vvv~~~dW----------~iIPlEnliA~~-------q~~~~~l~a~v~~~~-----eA-~~~~~~LE~G~dGVvl 150 (363)
.+.-|-|+...| +++|.|..++.+ .+.+.-|+|...... || +-+.--.|.|+|+|.+
T Consensus 111 Gaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGAD~if~ 190 (298)
T 3eoo_A 111 GVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIFP 190 (298)
T ss_dssp TCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCCCEEEe
Confidence 466788888777 489999766654 234567888776652 22 3344456789999999
Q ss_pred ec-CCHHHHHHHHHhh
Q 017962 151 KV-EDVKAVLALKEYF 165 (363)
Q Consensus 151 ~~-~d~~ei~~l~~~~ 165 (363)
.. .|+++++++.+.+
T Consensus 191 ~~~~~~ee~~~~~~~~ 206 (298)
T 3eoo_A 191 EAMKTLDDYRRFKEAV 206 (298)
T ss_dssp CCCCSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHc
Confidence 74 4789998887765
No 250
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=28.17 E-value=96 Score=28.22 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=28.6
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 250 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 250 ggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
|.-|+||.+|+.||+|.+-...|+.-... .-..+|++||=+
T Consensus 126 G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIag 166 (310)
T 3vo2_A 126 GVCSNFLCDLKPGADVKITGPVGKEMLMP----KDPNATVIMLAT 166 (310)
T ss_dssp CHHHHHHHTCCTTCEEEEEEEECSTTCCB----SCTTCEEEEEEE
T ss_pred cchhhHHhcCCCCCEEEEEeccCCcccCC----CCCCCCEEEEeC
Confidence 66899999999999999977666531110 012478888755
No 251
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=28.17 E-value=18 Score=33.04 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=29.1
Q ss_pred CC-ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 250 GG-KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 250 gg-kT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
+| -|+||++|+.||+|.+-...|+.-... .. -..+|++||=+
T Consensus 131 ~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~--~~-~~~~~~vlIag 173 (314)
T 2rc5_A 131 KGVCSNYMCDLKPGDEVTMTGPSGKKFLLP--NT-DFSGDIMFLAT 173 (314)
T ss_dssp BCHHHHHHHTCCTTCEEEEEEEECSSSCCC--SS-CBCSCEEEEEE
T ss_pred CcchHHHHhcCCCcCEEEEEeccCCceeCC--CC-CCCCCEEEEEC
Confidence 45 699999999999999987777542110 00 12578888855
No 252
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*
Probab=28.08 E-value=26 Score=32.03 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=23.0
Q ss_pred CceeeeeecCCCCEEEEEecCCCcccceeee
Q 017962 327 EKAIPVTSLKVGDEVLLRVQGAARHTGIEIQ 357 (363)
Q Consensus 327 g~~vsVt~Lk~GD~VL~~~~~~gRHfG~~I~ 357 (363)
++.|+..+|||||-|... .....|+||-+.
T Consensus 151 g~~V~~~~lqpGDLvFf~-~g~~~HVgIYlG 180 (214)
T 3ne0_A 151 GRKIPSSQMRRGDVIFYG-PNGSQHVTIYLG 180 (214)
T ss_dssp SEEEEGGGCCTTCEEEES-GGGCSEEEEEEE
T ss_pred CceechhhCCCCCEEEec-CCCCCEEEEEeC
Confidence 567888999999998764 233479999874
No 253
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=28.05 E-value=2.4e+02 Score=23.03 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=16.1
Q ss_pred CCceeeeee-ccCCCeEEEEcC
Q 017962 250 GGKTCYLSE-LKSGKEVIVVDQ 270 (363)
Q Consensus 250 ggkT~YLSE-L~sG~eVLvVd~ 270 (363)
.|...+-+- |++||+++.||.
T Consensus 44 ~~spA~~aG~l~~GD~I~~vng 65 (196)
T 3gsl_A 44 PGGAAAQDGRLRVNDSILFVNE 65 (196)
T ss_dssp TTSHHHHHCCCCTTCEEEEETT
T ss_pred CCChHHhcCCCCCCCEEEEECC
Confidence 344566666 999999999984
No 254
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=27.98 E-value=2.2e+02 Score=23.51 Aligned_cols=51 Identities=22% Similarity=0.138 Sum_probs=34.2
Q ss_pred eEEEEEEEEEcCCcceEEEeecCCCCCCceE-EEeccC----ceEEEEeeccccCCCCCC
Q 017962 178 MKATVTRVDVAGMGDRVCVDLCSLMRPGEGL-LVGSFA----RGLFLVHSECLESNYIAS 232 (363)
Q Consensus 178 ~~atVt~V~~vGmGdRVCVDtcsll~~GEGm-LVGs~s----~glfLVhsEt~e~~Yva~ 232 (363)
..++...|-.+=-||+|+|-.- .+.+- +.++.. =.-||++.+...+||.+-
T Consensus 88 ~~~s~s~il~L~~GD~V~v~~~----~~~~~~~~~~~~~~s~FsGfLl~~D~~~~~~~~~ 143 (148)
T 4f3j_A 88 ASLSGGAMVRLEPEDQVWVQVG----VGDYIGIYASIKTDSTFSGFLVYSDWHSSPVFAH 143 (148)
T ss_dssp EEEEEEEEEEECTTCEEEEECC----STTCEEEECBTTBCCEEEEEEEEESCCSSTTTCC
T ss_pred ceEeeEEEEEcCCCCEEEEEEE----cCCCceEEcCCCCCeEEEEEEEeecCCCCceEEe
Confidence 3445566778889999999742 33332 333321 246899999999998764
No 255
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=27.68 E-value=73 Score=27.49 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=22.0
Q ss_pred cCCceeEEEecCCc--eeeeeeccCCCeEEEEcC
Q 017962 239 AGPVHAYVLVPGGK--TCYLSELKSGKEVIVVDQ 270 (363)
Q Consensus 239 AGaVHaYv~~pggk--T~YLSEL~sG~eVLvVd~ 270 (363)
+=|=|.+...-+|+ ....+||+.||.|++.+.
T Consensus 99 ~T~~Hp~~v~~~g~~~w~~A~eLk~GD~v~~~~~ 132 (186)
T 2jmz_A 99 LTHDHPVYISKTGEVLEINAEMVKVGDYIYIPKN 132 (186)
T ss_dssp BCTTCEEEEEETTEEEEEEGGGCCTTSEEEEECS
T ss_pred EeCCCEEEEeCCCeEEEEEhhcCCCCCEEEeccc
Confidence 33445544443444 678899999999999763
No 256
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=27.57 E-value=56 Score=23.98 Aligned_cols=40 Identities=18% Similarity=0.000 Sum_probs=26.0
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
...++..... .+......+++.|+++.+.+|-+++++.+.
T Consensus 75 ~~~ii~~s~~-~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 114 (124)
T 1mb3_A 75 HIPVVAVTAF-AMKGDEERIREGGCEAYISKPISVVHFLET 114 (124)
T ss_dssp TSCEEEEC-------CHHHHHHHTCSEEECSSCCHHHHHHH
T ss_pred CCcEEEEECC-CCHHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 3456655443 334455678899999999999999887543
No 257
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=27.40 E-value=27 Score=28.73 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=16.4
Q ss_pred eeeeeecCCCCEEEEEecCC
Q 017962 329 AIPVTSLKVGDEVLLRVQGA 348 (363)
Q Consensus 329 ~vsVt~Lk~GD~VL~~~~~~ 348 (363)
--.+.+|++||+|-+++..+
T Consensus 91 ~~~~L~L~~GD~V~v~~~~~ 110 (131)
T 2wnv_C 91 GGVLLRLQVGEEVWLAVNDY 110 (131)
T ss_dssp EEEEEEECTTCEEEEEEEEE
T ss_pred eeEEEEECCCCEEEEEEeCC
Confidence 34588999999999999653
No 258
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=27.08 E-value=70 Score=30.46 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=23.0
Q ss_pred eEEE--EcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHH
Q 017962 123 TVFA--ISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV 158 (363)
Q Consensus 123 ~l~a--~v~~~~eA~~~~~~LE~G~dGVvl~~-----~d~~ei 158 (363)
.||+ .+.++++|..+ +|.|+|||++.+ +||..+
T Consensus 189 PVI~eGGI~TPsDAa~A---meLGAdgVlVgSAI~~a~dP~~m 228 (265)
T 1wv2_A 189 PVLVDAGVGTASDAAIA---MELGCEAVLMNTAIAHAKDPVMM 228 (265)
T ss_dssp CBEEESCCCSHHHHHHH---HHHTCSEEEESHHHHTSSSHHHH
T ss_pred CEEEeCCCCCHHHHHHH---HHcCCCEEEEChHHhCCCCHHHH
Confidence 4444 46788888765 556999999875 456543
No 259
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=26.93 E-value=1.1e+02 Score=30.68 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=40.0
Q ss_pred hhhhhhcccc-CCCceEEEeCCCCeeeehhhhhhcccCC--CceEEEE-cCCHHHHHHHHHHhhcccCeEEE
Q 017962 83 QELQQLQPAD-GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAI-SKTPSEAQIFLEALEQGLGGIVL 150 (363)
Q Consensus 83 e~~e~~~~~~-~~~~~vvv~~~dW~iIPlEnliA~~q~~--~~~l~a~-v~~~~eA~~~~~~LE~G~dGVvl 150 (363)
++++.+.... ..++.++++...-.--.+.++|.++... +..|++. +.+.++|+. +.+.|+|+|.+
T Consensus 229 ~~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~---l~~aGaD~I~v 297 (490)
T 4avf_A 229 DTGERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKA---LAEAGADAVKV 297 (490)
T ss_dssp THHHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHH---HHHTTCSEEEE
T ss_pred chHHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHH---HHHcCCCEEEE
Confidence 4444444333 3588999876654333344555554432 3355554 888888766 45689999998
No 260
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=26.88 E-value=29 Score=28.83 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=16.1
Q ss_pred eeeeecCCCCEEEEEecCC
Q 017962 330 IPVTSLKVGDEVLLRVQGA 348 (363)
Q Consensus 330 vsVt~Lk~GD~VL~~~~~~ 348 (363)
-.+.+|++||+|-+++..+
T Consensus 94 ~~~L~L~~GD~V~v~~~~~ 112 (136)
T 2wnv_B 94 GMVLKLEQGENVFLQATDK 112 (136)
T ss_dssp EEEEEECTTCEEEEEEEEE
T ss_pred eEEEEECCCCEEEEEEeCC
Confidence 4688999999999999654
No 261
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=26.86 E-value=80 Score=27.45 Aligned_cols=97 Identities=9% Similarity=0.016 Sum_probs=53.0
Q ss_pred hhHHHHHHHhCccEEEEcccc---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceE
Q 017962 22 KQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 98 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~---~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 98 (363)
-+.+..|++.|++.+-+...+ .+..+.+..+. . .-| +..+ |. ++. .++... .++.|
T Consensus 16 ~~~~~~a~~~Gv~~v~lr~k~~~~~~~~~~i~~l~---~----------~~~--~~li--vn--d~~-~~A~~~-gadgv 74 (210)
T 3ceu_A 16 DKIITALFEEGLDILHLRKPETPAMYSERLLTLIP---E----------KYH--RRIV--TH--EHF-YLKEEF-NLMGI 74 (210)
T ss_dssp HHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSC---G----------GGG--GGEE--ES--SCT-THHHHT-TCSEE
T ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHHHHHHH---H----------HhC--CeEE--Ee--CCH-HHHHHc-CCCEE
Confidence 478899999999999988543 12222221111 0 001 1122 22 221 222222 45666
Q ss_pred EEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017962 99 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 152 (363)
Q Consensus 99 vv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~ 152 (363)
-+...|.. ..+ + .+.-+...+.|.+|++.+ . .|+|-|.+.|
T Consensus 75 hl~~~~~~---~~~--~----~~~~ig~s~~t~~e~~~A---~-~GaDyv~~g~ 115 (210)
T 3ceu_A 75 HLNARNPS---EPH--D----YAGHVSCSCHSVEEVKNR---K-HFYDYVFMSP 115 (210)
T ss_dssp ECCSSSCS---CCT--T----CCSEEEEEECSHHHHHTT---G-GGSSEEEECC
T ss_pred EECccccc---ccc--c----cCCEEEEecCCHHHHHHH---h-hCCCEEEECC
Confidence 66444542 211 1 244677888999998766 3 6999998643
No 262
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=26.86 E-value=27 Score=34.31 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=38.1
Q ss_pred CCCCCCCCeeeec------CCceeEEEe-----c--------CCceeeeeeccCCCeEEEEc-CCCCeeEEeeeeEEEec
Q 017962 227 SNYIASRPFRVNA------GPVHAYVLV-----P--------GGKTCYLSELKSGKEVIVVD-QKGRQRTAVVGRVKIES 286 (363)
Q Consensus 227 ~~Yva~RPFRVNA------GaVHaYv~~-----p--------ggkT~YLSEL~sG~eVLvVd-~~G~~R~~~VGRvKIE~ 286 (363)
.|...+|||-+-- |-+|=.|.+ | |.-|.||++|+.||.|.+-- ..|.-+-- .-..
T Consensus 205 lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~lp-----~~~~ 279 (435)
T 1f20_A 205 LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLP-----RNPQ 279 (435)
T ss_dssp SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEEEECCTTSSCC-----SCTT
T ss_pred CCCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCCEEEEEEecCCCccCC-----CCCC
Confidence 3455667776532 445544443 3 44599999999999999866 44454211 0025
Q ss_pred cceeEEE
Q 017962 287 RPLILVE 293 (363)
Q Consensus 287 RPLllIe 293 (363)
+|++||=
T Consensus 280 ~piilIa 286 (435)
T 1f20_A 280 VPCILVG 286 (435)
T ss_dssp SCEEEEC
T ss_pred CCEEEEE
Confidence 7888773
No 263
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=26.46 E-value=3.6e+02 Score=26.07 Aligned_cols=66 Identities=15% Similarity=0.269 Sum_probs=43.9
Q ss_pred EecCCceeeeeeccC---CCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEe---------EecceE
Q 017962 247 LVPGGKTCYLSELKS---GKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIIL---------QNAETV 314 (363)
Q Consensus 247 ~~pggkT~YLSEL~s---G~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sviL---------QnAETI 314 (363)
-.|++++-|.+.... .+.|.++|.+= +. +++++++-..|= +- . +++|+.+-+-- .++.+|
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t--~~-v~~~I~vG~~P~--va--~-spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEA--GR-VIGMIDGGFLPN--PV--V-ADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTT--TE-EEEEEEECSSCE--EE--E-CTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCC--Ce-EEEEEECCCCCc--EE--E-CCCCCEEEEEcccccccccCCCCCEE
Confidence 358999999998862 46999999753 32 468999999994 21 1 33677643322 135567
Q ss_pred EEecCC
Q 017962 315 ALVSPC 320 (363)
Q Consensus 315 rLv~p~ 320 (363)
.++.+.
T Consensus 112 sviD~~ 117 (386)
T 3sjl_D 112 EVFDPV 117 (386)
T ss_dssp EEECTT
T ss_pred EEEECC
Confidence 777665
No 264
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=26.33 E-value=20 Score=32.37 Aligned_cols=33 Identities=15% Similarity=0.037 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017962 128 SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 163 (363)
Q Consensus 128 v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~ 163 (363)
+-+.++++.++ +.|+|||++...|++-+...++
T Consensus 76 vl~~d~~~~A~---~aGAd~v~~p~~d~~v~~~ar~ 108 (224)
T 1vhc_A 76 VLTAEQVVLAK---SSGADFVVTPGLNPKIVKLCQD 108 (224)
T ss_dssp CCSHHHHHHHH---HHTCSEEECSSCCHHHHHHHHH
T ss_pred EeeHHHHHHHH---HCCCCEEEECCCCHHHHHHHHH
Confidence 34667777765 5699999998888765554444
No 265
>1u5h_A CITE; TIM barrel, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC, lyase; 1.65A {Mycobacterium tuberculosis} SCOP: c.1.12.5 PDB: 1u5v_A* 1z6k_A
Probab=26.22 E-value=1e+02 Score=28.30 Aligned_cols=83 Identities=13% Similarity=0.150 Sum_probs=54.2
Q ss_pred EEEEEecChhhhhhhccccCCCceEEEeCCCCeeee------hhhhhhcccCCCceEEEEcCCHHHH---HHHHHHhhcc
Q 017962 74 GSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIP------AENIVASFQGSGKTVFAISKTPSEA---QIFLEALEQG 144 (363)
Q Consensus 74 ~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIP------lEnliA~~q~~~~~l~a~v~~~~eA---~~~~~~LE~G 144 (363)
-.|+.-.+++-++.+.. ..|.++++..|= +.| .+||.+. ...+..++..+++.+.. ...-.+++.|
T Consensus 10 ~L~vP~~~~~~~~ka~~---gaD~vilDlEDa-v~~~~k~~Ar~~l~~~-~~~~~~~~VRVn~~~~~~~~~dl~~~~~~g 84 (273)
T 1u5h_A 10 WLFCPADAPEAFAAAAA---AADVVILDLEDG-VAEAQKPAARNALRDT-PLDPERTVVRINAGGTADQARDLEALAGTA 84 (273)
T ss_dssp EEEEETTCGGGHHHHHH---HCSEEEEESSTT-SCGGGHHHHHHHHHHS-CCCTTSEEEECCCTTCHHHHHHHHHHHTSC
T ss_pred EEEeeCCCHHHHHHHHh---CCCEEEEECCCC-CCcCCHHHHHHHHHhc-CcCCCeEEEEECCCCchHHHHHHHHHHhcC
Confidence 34555666666666544 689999988763 233 3455543 43455799999987632 3344567889
Q ss_pred cCeEEEe-cCCHHHHHHH
Q 017962 145 LGGIVLK-VEDVKAVLAL 161 (363)
Q Consensus 145 ~dGVvl~-~~d~~ei~~l 161 (363)
+|||+|+ .++++++..+
T Consensus 85 ~~gi~lPKv~s~~~v~~~ 102 (273)
T 1u5h_A 85 YTTVMLPKAESAAQVIEL 102 (273)
T ss_dssp CCEEEETTCCCHHHHHTT
T ss_pred CCEEEeCCCCCHHHHHHH
Confidence 9999996 4567777543
No 266
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=26.15 E-value=1.3e+02 Score=23.98 Aligned_cols=104 Identities=10% Similarity=-0.031 Sum_probs=57.1
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEEe
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 101 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~ 101 (363)
+.++....+.|.+-.+++++..+..+.+.... +.|.. ..+...++++.++.+ ....++.+|+.
T Consensus 16 ~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~--------------~~~~~-~i~gd~~~~~~l~~a--~i~~ad~vi~~ 78 (153)
T 1id1_A 16 INTILQLNQRGQNVTVISNLPEDDIKQLEQRL--------------GDNAD-VIPGDSNDSSVLKKA--GIDRCRAILAL 78 (153)
T ss_dssp HHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH--------------CTTCE-EEESCTTSHHHHHHH--TTTTCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEECCChHHHHHHHHhh--------------cCCCe-EEEcCCCCHHHHHHc--ChhhCCEEEEe
Confidence 55666667789987777664333222222110 01111 122234455544433 24468888885
Q ss_pred CCCCeeeehhhhhhcc----cCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 017962 102 LPDWQVIPAENIVASF----QGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 149 (363)
Q Consensus 102 ~~dW~iIPlEnliA~~----q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVv 149 (363)
..|- -.|+.+.. .....++++.+++.+.++.+ .+.|+|-|+
T Consensus 79 ~~~d----~~n~~~~~~a~~~~~~~~ii~~~~~~~~~~~l---~~~G~~~vi 123 (153)
T 1id1_A 79 SDND----ADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKI---KMVHPDIIL 123 (153)
T ss_dssp SSCH----HHHHHHHHHHHHHTSSSCEEEECSSGGGHHHH---HTTCCSEEE
T ss_pred cCCh----HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH---HHcCCCEEE
Confidence 5542 34443221 12346899999999988765 457999766
No 267
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=26.08 E-value=85 Score=28.38 Aligned_cols=128 Identities=13% Similarity=0.206 Sum_probs=66.2
Q ss_pred hhHHHHHHHhCccEEEEcccc-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEE
Q 017962 22 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 100 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~-~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 100 (363)
...+..+.+.|+|.+.|..+. -.... ++ + +.+++.|+++++.+.-.+| ++.+.......|+|.+
T Consensus 70 ~~~i~~~~~aGAd~itvh~Ea~~~~~~---~~--i--------~~i~~~G~k~gv~lnp~tp--~~~~~~~l~~~D~Vlv 134 (231)
T 3ctl_A 70 QDYIAQLARAGADFITLHPETINGQAF---RL--I--------DEIRRHDMKVGLILNPETP--VEAMKYYIHKADKITV 134 (231)
T ss_dssp GGTHHHHHHHTCSEEEECGGGCTTTHH---HH--H--------HHHHHTTCEEEEEECTTCC--GGGGTTTGGGCSEEEE
T ss_pred HHHHHHHHHcCCCEEEECcccCCccHH---HH--H--------HHHHHcCCeEEEEEECCCc--HHHHHHHHhcCCEEEE
Confidence 335789999999999987643 11111 11 0 1223457777765544444 2344444446788875
Q ss_pred eC-----CCCeeee--hhhh---hhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe-c-----CC-H-HHHHH
Q 017962 101 DL-----PDWQVIP--AENI---VASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK-V-----ED-V-KAVLA 160 (363)
Q Consensus 101 ~~-----~dW~iIP--lEnl---iA~~q--~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~-~-----~d-~-~ei~~ 160 (363)
-+ .+-+.|| ++.| -+.++ +.+. .+.+-.-.. .+.+-.+.+.|+|+++.- + +| + +.+++
T Consensus 135 msV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~-~I~VdGGI~-~~~~~~~~~aGAd~~V~G~saif~~~d~~~~~~~~ 212 (231)
T 3ctl_A 135 MTVDPGFAGQPFIPEMLDKLAELKAWREREGLEY-EIEVDGSCN-QATYEKLMAAGADVFIVGTSGLFNHAENIDEAWRI 212 (231)
T ss_dssp ESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCC-EEEEESCCS-TTTHHHHHHHTCCEEEECTTTTGGGCSSHHHHHHH
T ss_pred eeeccCcCCccccHHHHHHHHHHHHHHhccCCCc-eEEEECCcC-HHHHHHHHHcCCCEEEEccHHHhCCCCcHHHHHHH
Confidence 22 2334454 3322 11111 1122 233332221 223445578899999998 3 36 5 45666
Q ss_pred HHHhhc
Q 017962 161 LKEYFD 166 (363)
Q Consensus 161 l~~~~~ 166 (363)
|++.+.
T Consensus 213 l~~~~~ 218 (231)
T 3ctl_A 213 MTAQIL 218 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766553
No 268
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=25.66 E-value=3.7e+02 Score=24.25 Aligned_cols=114 Identities=12% Similarity=0.019 Sum_probs=63.7
Q ss_pred cEEEEEeCchhHHHHHHHhCccEEEEc----cc-----------chhhhhhccceeeeeeeeecCCccccCCCCeeEEEE
Q 017962 13 KRVWIWTESKQVMTAAVERGWNTFVFL----SE-----------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSII 77 (363)
Q Consensus 13 K~vWvw~~~K~~vt~AlEsG~~~~v~~----~~-----------~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~ 77 (363)
+-+..+-...+++.++.+.|++.+.+. .+ +.+..+++.+ .-+.++-...
T Consensus 22 ~~~i~~~~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~----------------~~~~Pvi~~~ 85 (297)
T 2zbt_A 22 GGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMA----------------AVSIPVMAKV 85 (297)
T ss_dssp TEEEEEESSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHT----------------TCSSCEEEEE
T ss_pred CCeeeeechHHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHH----------------hcCCCeEEEe
Confidence 334456677999999999999998652 11 1111222111 1122322222
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 78 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 78 ~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~~--~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
.+.+.++.+.+.. ..++.+...+ + .++..++..+... ..-+.+.+.++++++. +.+.|+|-|.++
T Consensus 86 ~~~~~~~~~~~~~--aGad~v~~~~-~---~~~~~~~~~~~~~~~~i~l~~~v~~~~~~~~---a~~~Gad~I~v~ 152 (297)
T 2zbt_A 86 RIGHFVEAMILEA--IGVDFIDESE-V---LTPADEEHHIDKWKFKVPFVCGARNLGEALR---RIAEGAAMIRTK 152 (297)
T ss_dssp ETTCHHHHHHHHH--TTCSEEEEET-T---SCCSCSSCCCCGGGCSSCEEEEESSHHHHHH---HHHTTCSEEEEC
T ss_pred ccCCHHHHHHHHH--CCCCEEeeeC-C---CChHHHHHHHHHhCCCceEEeecCCHHHHHH---HHHcCCCEEEEc
Confidence 3444455444432 3577773322 1 2335555554432 3456777899999765 478999998776
No 269
>3nfg_A DNA-directed RNA polymerase I subunit RPA49; triple barrel, transcription, dimerization; 2.51A {Candida glabrata}
Probab=25.54 E-value=17 Score=29.99 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=21.4
Q ss_pred CceEEEeccCceE------------------EEEeeccccCCCCC
Q 017962 205 GEGLLVGSFARGL------------------FLVHSECLESNYIA 231 (363)
Q Consensus 205 GEGmLVGs~s~gl------------------fLVhsEt~e~~Yva 231 (363)
.--+.||||+.|+ +|+|+||....|++
T Consensus 18 ~p~~~v~~f~pGl~~P~~t~F~lY~kk~~~e~lLhgEt~rLdY~g 62 (102)
T 3nfg_A 18 DPSVVVSNFFKGVRVPKDTEFQLYKKRKQDQFVLHGENERLEYDG 62 (102)
T ss_dssp SCCCEEEECCTTCCCCTTCEEEEEEECCCCCEEEEEECSSEEEEE
T ss_pred CCCEEEEeccCCccCCCCceeEeeecCCCcceEEEeCCCceEEEe
Confidence 4457889999988 89999997767854
No 270
>2pcn_A S-adenosylmethionine:2-demethylmenaquinone methyltransferase; beta, beta alpha domain; 1.90A {Geobacillus kaustophilus}
Probab=25.52 E-value=20 Score=31.15 Aligned_cols=29 Identities=38% Similarity=0.551 Sum_probs=24.6
Q ss_pred eeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 017962 254 CYLSELKSGKEVIVVDQKGRQRTAVVGRVK 283 (363)
Q Consensus 254 ~YLSEL~sG~eVLvVd~~G~~R~~~VGRvK 283 (363)
.+|.++..|| ||++|..|..+.++.|-.-
T Consensus 48 ~al~~~~~G~-VlVvd~~g~~~~a~~G~~l 76 (161)
T 2pcn_A 48 EALETVPPGT-VLVVDGKGSRRVALLGDRL 76 (161)
T ss_dssp HHHHHSCTTC-EEEEECTTCCSSEEECHHH
T ss_pred HHHHhcCCCC-EEEEECCCCCCceeehHHH
Confidence 4888999995 9999999999999998543
No 271
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=25.47 E-value=1.1e+02 Score=28.61 Aligned_cols=105 Identities=15% Similarity=0.093 Sum_probs=58.7
Q ss_pred eeeEEEEEEEEEcCCcc-eEEEeec-----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee----cCCceeE
Q 017962 176 SLMKATVTRVDVAGMGD-RVCVDLC-----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN----AGPVHAY 245 (363)
Q Consensus 176 ~L~~atVt~V~~vGmGd-RVCVDtc-----sll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVN----AGaVHaY 245 (363)
...+++|++++.+.-.= ++.+..- .-+.||+=+-| .-.....+|...|||-+- .|-+.=.
T Consensus 151 ~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l----------~~~~~~~~~~~~R~YSi~s~p~~~~~~i~ 220 (396)
T 1gvh_A 151 GTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGV----------WLKPEGFPHQEIRQYSLTRKPDGKGYRIA 220 (396)
T ss_dssp SEEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEE----------EECCTTCSSCEEEEEECCSCCCSSCEEEE
T ss_pred CcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCeEEE----------EecCCCCccceeecceeccCCCCCeEEEE
Confidence 45789999999986322 2222221 12445543322 211001123334555543 2444445
Q ss_pred EEec--CCceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEE
Q 017962 246 VLVP--GGKTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 295 (363)
Q Consensus 246 v~~p--ggkT~YLSE-L~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe 295 (363)
|..- |.-|+||.+ |+.||+|.+-...|.... -+ -..+|++||=+-
T Consensus 221 Vk~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l---~~--~~~~~~vlIagG 268 (396)
T 1gvh_A 221 VKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFM---AV--ADDTPVTLISAG 268 (396)
T ss_dssp EECCTTCHHHHHHHHTCCTTCEEEEEEEECSCCC---CC--CTTCCEEEEEEG
T ss_pred EEEcCCCcchHHHHhcCCCCCEEEEEcCCcceEC---CC--CCCCCEEEEecc
Confidence 5543 667999997 999999999887775421 10 136889988653
No 272
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=24.60 E-value=3.2e+02 Score=23.08 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=42.9
Q ss_pred eecCCCCCCceEEEecc-CceEEEEeeccccCCCCCCCCeeeecC---CceeEEEecCCceeeeeeccCCCeEEEEcCCC
Q 017962 197 DLCSLMRPGEGLLVGSF-ARGLFLVHSECLESNYIASRPFRVNAG---PVHAYVLVPGGKTCYLSELKSGKEVIVVDQKG 272 (363)
Q Consensus 197 Dtcsll~~GEGmLVGs~-s~glfLVhsEt~e~~Yva~RPFRVNAG---aVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G 272 (363)
||+-.+.++.-++|-+. ...+.++..++... --+++.+ .+|+....|+|+.-|.+. .....|.++|.+.
T Consensus 2 ~~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~------~~~~~~~~~~~~~~~~~s~dg~~~~v~~-~~~~~i~~~d~~t 74 (349)
T 1jmx_B 2 DTGPALKAGHEYMIVTNYPNNLHVVDVASDTV------YKSCVMPDKFGPGTAMMAPDNRTAYVLN-NHYGDIYGIDLDT 74 (349)
T ss_dssp --CCCCCTTCEEEEEEETTTEEEEEETTTTEE------EEEEECSSCCSSCEEEECTTSSEEEEEE-TTTTEEEEEETTT
T ss_pred CccccccCCCEEEEEeCCCCeEEEEECCCCcE------EEEEecCCCCCCceeEECCCCCEEEEEe-CCCCcEEEEeCCC
Confidence 67777888777766544 45555555444221 1122323 367778889999888886 3345788888764
Q ss_pred Ce
Q 017962 273 RQ 274 (363)
Q Consensus 273 ~~ 274 (363)
..
T Consensus 75 ~~ 76 (349)
T 1jmx_B 75 CK 76 (349)
T ss_dssp TE
T ss_pred Cc
Confidence 43
No 273
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=24.34 E-value=39 Score=25.36 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=27.3
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..++..... .+......+++.|+++.+.+|-+++++.+.
T Consensus 78 ~~ii~ls~~-~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~ 116 (130)
T 1dz3_A 78 PNVIMLTAF-GQEDVTKKAVELGASYFILKPFDMENLAHH 116 (130)
T ss_dssp CEEEEEEET-TCHHHHHHHHHTTCEEEEECSSCCTTHHHH
T ss_pred CcEEEEecC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 445544433 334556778999999999999998877543
No 274
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=23.81 E-value=38 Score=30.23 Aligned_cols=56 Identities=7% Similarity=0.046 Sum_probs=37.4
Q ss_pred CCeeeehhhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017962 104 DWQVIPAENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 163 (363)
Q Consensus 104 dW~iIPlEnliA~~q~~~~~l~a~-v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~~ 163 (363)
++..++-+.++++++..+-++++- +++.++++.. .++.|+|||+ ||+|+.+.++.+
T Consensus 177 ~~~~~~~~~~v~~~~~~G~~v~~wTvn~~~~~~~~--l~~~GvdgIi--TD~p~~~~~~~~ 233 (248)
T 1zcc_A 177 TPAQMRRPGIIEASRKAGLEIMVYYGGDDMAVHRE--IATSDVDYIN--LDRPDLFAAVRS 233 (248)
T ss_dssp CHHHHHSHHHHHHHHHHTCEEEEECCCCCHHHHHH--HHHSSCSEEE--ESCHHHHHHHHH
T ss_pred cHHHhCCHHHHHHHHHCCCEEEEECCCCHHHHHHH--HHHcCCCEEE--ECCHHHHHHHHH
Confidence 455553356677776666666554 6777776651 4689999977 888988766554
No 275
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=23.77 E-value=61 Score=31.64 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=34.4
Q ss_pred CCceEEEeCC-CCeeeehhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 017962 94 QAENIVIDLP-DWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 151 (363)
Q Consensus 94 ~~~~vvv~~~-dW~iIPlEnliA~~q~~--~~~l~a-~v~~~~eA~~~~~~LE~G~dGVvl~ 151 (363)
.++.+.++.. ++. -.+.++|+.+... +..|++ .+.++++|+.+ .+.|+|+|.+.
T Consensus 112 GvdvI~id~a~G~~-~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a---~~aGaD~I~Vg 169 (361)
T 3r2g_A 112 GADFFCVDVAHAHA-KYVGKTLKSLRQLLGSRCIMAGNVATYAGADYL---ASCGADIIKAG 169 (361)
T ss_dssp TCCEEEEECSCCSS-HHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHH---HHTTCSEEEEC
T ss_pred CCCEEEEeCCCCCc-HhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHH---HHcCCCEEEEc
Confidence 4788888643 221 1122344444332 457888 69999998765 47799999983
No 276
>4fdy_A Similar to lipoprotein, NLP/P60 family; SLT/lysozyme-like muramidase, NLPC/P60 LD endopeptidase, STR genomics; 2.23A {Staphylococcus aureus subsp}
Probab=23.76 E-value=32 Score=33.00 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=23.8
Q ss_pred CceeeeeecCCCCEEEEEecC-C---Ccccceeee
Q 017962 327 EKAIPVTSLKVGDEVLLRVQG-A---ARHTGIEIQ 357 (363)
Q Consensus 327 g~~vsVt~Lk~GD~VL~~~~~-~---gRHfG~~I~ 357 (363)
+.+|+..+|+|||-|...... . ..|+||=+.
T Consensus 245 g~~V~~~~lqpGDLvff~~~~~~g~~~~HVGIYlG 279 (313)
T 4fdy_A 245 TQEISMEEAQAGDLIFFHSTYNAGTYVTHVAIYLE 279 (313)
T ss_dssp SEEECTTTCCTTCEEEESSSSCCSSSCCEEEEEEE
T ss_pred CceechhhCCCCCEEEEecCCCCCCCCcEEEEEec
Confidence 567888999999998876532 2 459999874
No 277
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=23.64 E-value=81 Score=27.13 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=16.5
Q ss_pred eeecCCCCEEEEEecCCCccc
Q 017962 332 VTSLKVGDEVLLRVQGAARHT 352 (363)
Q Consensus 332 Vt~Lk~GD~VL~~~~~~gRHf 352 (363)
.--.++||.|-+....+.++|
T Consensus 128 LlGk~vGD~v~v~~P~G~~~~ 148 (158)
T 2p4v_A 128 LLKKEVGDLAVVNTPAGEASW 148 (158)
T ss_dssp STTCCTTCEEEEECSSCEEEE
T ss_pred hcCCCCCCEEEEEcCCCcEEE
Confidence 345799999999998886554
No 278
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=23.42 E-value=21 Score=32.34 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=27.6
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 017962 250 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294 (363)
Q Consensus 250 ggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeA 294 (363)
|--|+||++|+.||+|.+-...|+.-... .-..+|++||=+
T Consensus 116 G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIag 156 (304)
T 2bmw_A 116 GVCSTYLTHIEPGSEVKITGPVGKEMLLP----DDPEANVIMLAG 156 (304)
T ss_dssp CHHHHHHHTCCTTCEEEEEEEECSSSCCC----SCTTCEEEEEEE
T ss_pred cchhhHHhcCCCCCEEEEEeccCCceeCC----CCCCCCEEEEec
Confidence 33789999999999999987777532100 012477777754
No 279
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=23.34 E-value=38 Score=27.78 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=21.8
Q ss_pred cceEEEecCCCC-CCCCCceeeeeecCCCCEEEEEe
Q 017962 311 AETVALVSPCKG-TGEQEKAIPVTSLKVGDEVLLRV 345 (363)
Q Consensus 311 AETIrLv~p~~~-~~~~g~~vsVt~Lk~GD~VL~~~ 345 (363)
+.+++++..+.. .-+....+++.+|+|||.|+++-
T Consensus 17 p~~a~v~r~g~~~~~~~~~~v~~~~l~~GDiv~v~~ 52 (124)
T 2kij_A 17 ATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVP 52 (124)
T ss_dssp CSEEEEEECSSSTTCCEEEEEETTTCCTTCEEECCT
T ss_pred CCEEEEEECCCCCceeEEEEEeHHHCCCCCEEEECC
Confidence 456666653211 00002458999999999999864
No 280
>1nxj_A Probable S-adenosylmethionine:2- demethylmenaquinone methyltransferase; beta/BETA/alpha domain, structural genomics, PSI; HET: TLA; 1.90A {Mycobacterium tuberculosis} SCOP: c.8.7.1
Probab=23.28 E-value=23 Score=31.65 Aligned_cols=29 Identities=41% Similarity=0.580 Sum_probs=24.8
Q ss_pred eeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 017962 254 CYLSELKSGKEVIVVDQKGRQRTAVVGRVK 283 (363)
Q Consensus 254 ~YLSEL~sG~eVLvVd~~G~~R~~~VGRvK 283 (363)
.+|.+++.|+ ||++|..|..+.++.|-.-
T Consensus 79 ~al~~~~~G~-VlVvd~~g~~~~A~~G~~l 107 (183)
T 1nxj_A 79 SVLSQPSAGG-VLVIDGAGSLHTALVGDVI 107 (183)
T ss_dssp HHHHSCCSSC-EEEEECTTCCSSEEECHHH
T ss_pred HHHHhcCCCC-EEEEECCCCCCceeeHHHH
Confidence 5888999995 9999999999999998543
No 281
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=23.23 E-value=32 Score=33.36 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=25.5
Q ss_pred CCceeeeeeccCCCeEEE-E-cCCCCeeEEeeeeEEEeccceeEEE
Q 017962 250 GGKTCYLSELKSGKEVIV-V-DQKGRQRTAVVGRVKIESRPLILVE 293 (363)
Q Consensus 250 ggkT~YLSEL~sG~eVLv-V-d~~G~~R~~~VGRvKIE~RPLllIe 293 (363)
|--|+||++|+.||.|-+ + ...|.-+.-. -..+|++||=
T Consensus 207 G~~S~~L~~l~~Gd~v~v~v~~P~g~F~lp~-----~~~~piImIg 247 (393)
T 4dql_A 207 GIASNYLAELQEGDTITCFISTPQSEFTLPK-----DPETPLIMVG 247 (393)
T ss_dssp CHHHHHHHHCCTTCEEEEEEECCSSCCCCCS-----STTSCEEEEC
T ss_pred CccchhHHhCCCcCEEEEEEEcCCCCcccCc-----cCCCCeEEEc
Confidence 446899999999999985 3 4566542210 0246888773
No 282
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=22.77 E-value=5e+02 Score=25.99 Aligned_cols=167 Identities=12% Similarity=0.039 Sum_probs=83.7
Q ss_pred HHHHHHhhcccCeEEEecC------CHHHHHHHHHhhcccccccceeeeeEEEEEEE--EEcCCcceEEEeecCCCCCCc
Q 017962 135 QIFLEALEQGLGGIVLKVE------DVKAVLALKEYFDGRNEVSNLLSLMKATVTRV--DVAGMGDRVCVDLCSLMRPGE 206 (363)
Q Consensus 135 ~~~~~~LE~G~dGVvl~~~------d~~ei~~l~~~~~~~~~~~~~l~L~~atVt~V--~~vGmGdRVCVDtcsll~~GE 206 (363)
...+.++..|..| .+.+- +.+||.+|..|+.........+.+. .+.+. ..+.-+.| .--.+-...++.
T Consensus 92 ~~l~~~i~~G~~~-~Mp~~~~~~~Lsd~ei~~l~~yi~~~~~~~~~~~~~--~i~~s~kv~~~~~~~-P~~~~~~~d~~~ 167 (567)
T 1qks_A 92 DYLQSFITYASPA-GMPNWGTSGELSAEQVDLMANYLLLDPAAPPEFGMK--EMRESWKVHVAPEDR-PTQQMNDWDLEN 167 (567)
T ss_dssp HHHHHHHTTCCCC-CCTTTSCCCCCCHHHHHHHHHHHHSCCCCCCCCCHH--HHHHHCEESSCGGGS-CSSCCSCCCGGG
T ss_pred HHHHHHHHhCCCC-CCCCccccCCCCHHHHHHHHHHHhhcccCCCccchh--hhhccceeecccccc-ccccccccCCCc
Confidence 3444556677655 33322 4688999999996544322222211 11100 01111111 000011122333
Q ss_pred eEEEeccCc-eEEEEeeccccCCCCCCCCeeeecC-CceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEE
Q 017962 207 GLLVGSFAR-GLFLVHSECLESNYIASRPFRVNAG-PVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKI 284 (363)
Q Consensus 207 GmLVGs~s~-glfLVhsEt~e~~Yva~RPFRVNAG-aVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKI 284 (363)
=++|-+... -+.++..+|.+ .-.++..| .+|.-...|+||.-|.+. -.+.|.++|..-.+. ..+.+++.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~------v~~~i~~g~~p~~v~~SpDGr~lyv~~--~dg~V~viD~~~~t~-~~v~~i~~ 238 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYE------IKTVLDTGYAVHISRLSASGRYLFVIG--RDGKVNMIDLWMKEP-TTVAEIKI 238 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCC------EEEEEECSSCEEEEEECTTSCEEEEEE--TTSEEEEEETTSSSC-CEEEEEEC
T ss_pred eEEEEeCCCCeEEEEECCCCe------EEEEEeCCCCccceEECCCCCEEEEEc--CCCeEEEEECCCCCC-cEeEEEec
Confidence 344444433 34444444321 12355566 568888889999999885 245899999841222 23567777
Q ss_pred eccceeEEEEEecC----CCCeEEEEEeEecceEEEec
Q 017962 285 ESRPLILVEAKTNS----GDQTLYGIILQNAETVALVS 318 (363)
Q Consensus 285 E~RPLllIeAe~~~----~~g~~~sviLQnAETIrLv~ 318 (363)
-..|--+. . + .+|+.+-+.-...-+|.++.
T Consensus 239 G~~P~~ia---~-s~~~~pDGk~l~v~n~~~~~v~ViD 272 (567)
T 1qks_A 239 GSEARSIE---T-SKMEGWEDKYAIAGAYWPPQYVIMD 272 (567)
T ss_dssp CSEEEEEE---E-CCSTTCTTTEEEEEEEETTEEEEEE
T ss_pred CCCCceeE---E-ccccCCCCCEEEEEEccCCeEEEEE
Confidence 77764221 1 2 25776555555555666654
No 283
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=22.46 E-value=1.1e+02 Score=25.94 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=60.3
Q ss_pred hhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCceEEEe
Q 017962 22 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 101 (363)
Q Consensus 22 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~ 101 (363)
..+.....+.|.+-++++.+ .+.++++.+-. |.. ..+...++++.++.+. ...++.+|+.
T Consensus 13 ~~la~~L~~~g~~v~vid~~-~~~~~~l~~~~----------------~~~-~i~gd~~~~~~l~~a~--i~~ad~vi~~ 72 (218)
T 3l4b_C 13 YYLARSMLSRKYGVVIINKD-RELCEEFAKKL----------------KAT-IIHGDGSHKEILRDAE--VSKNDVVVIL 72 (218)
T ss_dssp HHHHHHHHHTTCCEEEEESC-HHHHHHHHHHS----------------SSE-EEESCTTSHHHHHHHT--CCTTCEEEEC
T ss_pred HHHHHHHHhCCCeEEEEECC-HHHHHHHHHHc----------------CCe-EEEcCCCCHHHHHhcC--cccCCEEEEe
Confidence 45566666789887777653 44444432210 100 1222344555544432 3467888886
Q ss_pred CCCCeeeehhhhhhcc----cCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 102 LPDWQVIPAENIVASF----QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 102 ~~dW~iIPlEnliA~~----q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
..|- .+|+++.. .....++++.+++.+.++.+ .+.|+|-|+....
T Consensus 73 ~~~d----~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l---~~~G~d~vi~p~~ 121 (218)
T 3l4b_C 73 TPRD----EVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIF---KKMGITTVLNLTT 121 (218)
T ss_dssp CSCH----HHHHHHHHHHHHTSCCCEEEECCCSGGGHHHH---HHHTCEECCCHHH
T ss_pred cCCc----HHHHHHHHHHHHHcCCCeEEEEEeCcchHHHH---HHCCCCEEECHHH
Confidence 5553 34543322 13456899999999998876 4569998775443
No 284
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=22.29 E-value=91 Score=24.11 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=27.7
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 162 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~ 162 (363)
..++....+. +......+++.|+++.+.+|-+++++.+.-
T Consensus 91 ~pii~~s~~~-~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l 130 (143)
T 3m6m_D 91 TPVVVLSADV-TPEAIRACEQAGARAFLAKPVVAAKLLDTL 130 (143)
T ss_dssp CCEEEEESCC-CHHHHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred CeEEEEeCCC-CHHHHHHHHHcChhheeeCCCCHHHHHHHH
Confidence 3455544433 234456788999999999999998876443
No 285
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=22.22 E-value=93 Score=25.89 Aligned_cols=39 Identities=33% Similarity=0.514 Sum_probs=23.9
Q ss_pred eEEEecCCCCCCCCCceeeee--------ecCCCCEEEEEecCC-Cccc
Q 017962 313 TVALVSPCKGTGEQEKAIPVT--------SLKVGDEVLLRVQGA-ARHT 352 (363)
Q Consensus 313 TIrLv~p~~~~~~~g~~vsVt--------~Lk~GD~VL~~~~~~-gRHf 352 (363)
|.+||+|+..... ..-||+. -.|+||+|-+....+ .++|
T Consensus 72 ~~~iVg~~ead~~-~~~IS~~SPlG~ALlGk~~GD~v~v~~p~G~~~~~ 119 (136)
T 3bmb_A 72 VRTLVYPAKMTDS-NTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHL 119 (136)
T ss_dssp EEEEECGGGCCCT-TTEEETTSHHHHHHTTCBTTCEEEEEETTTEEEEE
T ss_pred EEEEEChHHcCcc-ccEecCCCHHHHHHcCCCCCCEEEEEcCCCCEEEE
Confidence 5556665533221 1234443 479999999999877 5554
No 286
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=22.20 E-value=66 Score=26.80 Aligned_cols=41 Identities=27% Similarity=0.312 Sum_probs=29.5
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLALK 162 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~-d~~ei~~l~ 162 (363)
...++...... +......+++.|++|.+.+|- +++++.+.-
T Consensus 68 ~~~ii~lt~~~-~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i 109 (223)
T 2hqr_A 68 SIVVLVSSDNP-TSEEEVHAFEQGADDYIAKPYRSIKALVARI 109 (223)
T ss_dssp TSEEEEEESSC-CHHHHHHHHHHTCSEEEETTCSCTHHHHHHH
T ss_pred CCcEEEEECCC-CHHHHHHHHHcCCCEEEECCCCCHHHHHHHH
Confidence 45666555443 345667888999999999999 998875543
No 287
>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}
Probab=21.95 E-value=79 Score=28.46 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=26.7
Q ss_pred HHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017962 134 AQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 165 (363)
Q Consensus 134 A~~~~~~LE~G~dGVvl~~~d~~ei~~l~~~~ 165 (363)
-+.+-.+.+.|+||+|..+..|.++..+++.+
T Consensus 125 ~~~a~~a~~~g~~GvV~sat~p~e~~~ir~~~ 156 (222)
T 4dbe_A 125 DYIKNVIREISPKGIVVGGTKLDHITQYRRDF 156 (222)
T ss_dssp HHHHHHHHHHCCSEEEECTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCEEEECCCCHHHHHHHHHhC
Confidence 45666777899999999998899998888765
No 288
>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A
Probab=21.73 E-value=40 Score=31.18 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=22.8
Q ss_pred Cceeee----eecCCCCEEEEEe------cCCCcccceeee
Q 017962 327 EKAIPV----TSLKVGDEVLLRV------QGAARHTGIEIQ 357 (363)
Q Consensus 327 g~~vsV----t~Lk~GD~VL~~~------~~~gRHfG~~I~ 357 (363)
|.+++. .+|+|||-|.... .....|+||-+.
T Consensus 209 g~~v~~~~~~~~~~pGDLvff~~~~~~~~~~~~~Hvgiy~g 249 (306)
T 3npf_A 209 GEHIDIAPDFSNVKRGDLVFFGRKATAERKEGISHVGIYLG 249 (306)
T ss_dssp SEEECCCTTCTTCCTTCEEEEEECCCSSSCCEEEEEEEEEE
T ss_pred CcEecccCccccCCCccEEEECCCCccCCCCCCeEEEEEEC
Confidence 566664 7999999888776 223349999884
No 289
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Probab=21.69 E-value=4e+02 Score=25.09 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=48.8
Q ss_pred EEEEecChhhhhhhccccCCCceEEEeCCCCeeee------hhhhhhcccCC---CceEEEEcCCHHH---HHHHHHHhh
Q 017962 75 SIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIP------AENIVASFQGS---GKTVFAISKTPSE---AQIFLEALE 142 (363)
Q Consensus 75 ~~~~v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIP------lEnliA~~q~~---~~~l~a~v~~~~e---A~~~~~~LE 142 (363)
.|+.=.+++-++.+.. ..+|+||++..|= +.| .+|+.+.++.. ...++..+++.+- ..-...+|.
T Consensus 49 L~vP~~~p~~~eka~~--~gaD~vilDLEDa-V~~~~k~~Ar~~l~~~l~~~~~~~~~~~VRVn~~~t~~~~~Dl~~~l~ 125 (316)
T 3qll_A 49 LFTPATRSDRFAKAAE--NGADVAIIDLEDS-VSQADKEQARQKAISYLSSRPATSLPLALRINGLDTRAGIEDIHALLE 125 (316)
T ss_dssp EEEESCC------------CCSEEEEECSTT-SCGGGHHHHHHHHHC---------CCEEEECCCTTSHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHhh--CCCCEEEEeCCCC-CCCcCHHHHHHHHHHHHhcccccCCeEEEEECCCCCchhHHHHHHHHh
Confidence 4444444554444332 3588999977763 333 23555554432 3578999988652 122335667
Q ss_pred ccc--CeEEEe-cCCHHHHHHHHHhhcc
Q 017962 143 QGL--GGIVLK-VEDVKAVLALKEYFDG 167 (363)
Q Consensus 143 ~G~--dGVvl~-~~d~~ei~~l~~~~~~ 167 (363)
.|. |||+|+ .++++++..+.+.+..
T Consensus 126 ~g~~~~gIvlPKvesa~~v~~~~~~l~~ 153 (316)
T 3qll_A 126 CGSLPDYLVLPKTESAAHLQILDRLMMF 153 (316)
T ss_dssp SCCCCSEEEETTCCSHHHHHHHHHHTSC
T ss_pred CCCCCCEEEeCCCCCHHHHHHHHHHHHh
Confidence 775 999997 5678999888887743
No 290
>3fn2_A Putative sensor histidine kinase domain; GUT microbiome, structural genomics protein structure initiative; HET: MSE; 1.90A {Clostridium symbiosum atcc 14940}
Probab=21.61 E-value=1.2e+02 Score=25.29 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=27.7
Q ss_pred ceEEEecCCCCCCCCCceeeeeecCCCCEEEEEecCCCcccceeee
Q 017962 312 ETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQ 357 (363)
Q Consensus 312 ETIrLv~p~~~~~~~g~~vsVt~Lk~GD~VL~~~~~~gRHfG~~I~ 357 (363)
+.+|+...+ |..+.--..-++|+.-+-.++++-|||.+++
T Consensus 50 ~~lrI~D~~------G~vi~~~~~~a~~~~~vLa~~g~n~lGW~Le 89 (106)
T 3fn2_A 50 GYVRITDKD------GQVITYEDGSVQDKTVFLTNEGANKLGWKLE 89 (106)
T ss_dssp CEEEEECTT------SCBCSCCCSCSTTEEEEEEECSCCTTCCEEE
T ss_pred CcEEEEcCC------CCEEecCCCCcCcceeehhhcCCCccceEEE
Confidence 345666555 4444433444578888888999999999985
No 291
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=21.35 E-value=1.2e+02 Score=28.94 Aligned_cols=98 Identities=19% Similarity=0.140 Sum_probs=58.6
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEe---cCCCCe----EEEEEeEecceEEEec
Q 017962 246 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKT---NSGDQT----LYGIILQNAETVALVS 318 (363)
Q Consensus 246 v~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~---~~~~g~----~~sviLQnAETIrLv~ 318 (363)
+.+||+.-..-.+..+|.-+.. .+|+-+....|.++.. .+++-|+... -..-|. ++.-+-++-|.|.+-.
T Consensus 41 iVlPGd~L~~~~~~~~G~Gty~--~~g~I~Asv~G~v~~~-~~~vsV~p~~~rY~P~vGDvViG~Vt~V~~~~a~VdI~s 117 (308)
T 2nn6_H 41 LVVPGDTITTDTGFMRGHGTYM--GEEKLIASVAGSVERV-NKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNS 117 (308)
T ss_dssp BCCTTCBCCCCTTCCBCTTEEE--CSSSEEECSSEEEEEE-TTEEEEEESSCCCCCCSSBCCCEEEEEEETTEEEEECSS
T ss_pred EEeCCCCCCCCCCEeecCCeEE--ECCEEEEEEEEEEEec-CCEEEEeeCCCccCCCCCCEEEEEEEEEeCceEEEEECC
Confidence 4568888777777788877543 4788999999998865 3466666421 000122 2445567778888765
Q ss_pred CCCCCC-------CCCceeee----------eecCCCCEEEEEecC
Q 017962 319 PCKGTG-------EQEKAIPV----------TSLKVGDEVLLRVQG 347 (363)
Q Consensus 319 p~~~~~-------~~g~~vsV----------t~Lk~GD~VL~~~~~ 347 (363)
+..+.- +++. +.. ..|++||.|..++..
T Consensus 118 ~~~~~l~iS~v~f~gg~-iR~~~~~D~~~m~~~l~vGDlV~ArVis 162 (308)
T 2nn6_H 118 RLDSVLLLSSMNLPGGE-LRRRSAEDELAMRGFLQEGDLISAEVQA 162 (308)
T ss_dssp SSCEEEESSCCC--------------CHHHHHHSCSSCEECCEEEE
T ss_pred CcCCceechhhccccce-eecccchhhhhhhccCCCCCEEEEEEEE
Confidence 542100 0010 001 358999999987654
No 292
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=21.03 E-value=29 Score=31.02 Aligned_cols=79 Identities=11% Similarity=0.019 Sum_probs=40.7
Q ss_pred EEecChhhhhhhccc--cCCCceEEEeCCCCeee-ehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017962 77 IEVSTPQELQQLQPA--DGQAENIVIDLPDWQVI-PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 153 (363)
Q Consensus 77 ~~v~~~e~~e~~~~~--~~~~~~vvv~~~dW~iI-PlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~ 153 (363)
+...++++...++.. .+..+.+-+..++..-. -++.+-.++. .-..-...+-+.++++.++ +.|+|||++...
T Consensus 22 ~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~-~~~vgagtvi~~d~~~~A~---~aGAd~v~~p~~ 97 (214)
T 1wbh_A 22 IVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVP-EAIVGAGTVLNPQQLAEVT---EAGAQFAISPGL 97 (214)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCT-TSEEEEESCCSHHHHHHHH---HHTCSCEEESSC
T ss_pred EECCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCc-CCEEeeCEEEEHHHHHHHH---HcCCCEEEcCCC
Confidence 344555554443332 24467777765543211 1122223332 1111223355667777765 569999998877
Q ss_pred CHHHHH
Q 017962 154 DVKAVL 159 (363)
Q Consensus 154 d~~ei~ 159 (363)
|++-+.
T Consensus 98 d~~v~~ 103 (214)
T 1wbh_A 98 TEPLLK 103 (214)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 775443
No 293
>2cw8_A Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococcus kodakarensis} PDB: 2cw7_A
Probab=20.84 E-value=3.3e+02 Score=27.44 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=42.9
Q ss_pred CceeeeeeccCCCeEEEEcCCC-CeeEEeeeeE-EEe-ccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCCCCCC
Q 017962 251 GKTCYLSELKSGKEVIVVDQKG-RQRTAVVGRV-KIE-SRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGEQE 327 (363)
Q Consensus 251 gkT~YLSEL~sG~eVLvVd~~G-~~R~~~VGRv-KIE-~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~p~~~~~~~g 327 (363)
+.+-|+ ++. +=+|+.+|.++ +.+...|=+| |.. ..+|+.|+.+ .|+.+.+. ++|==|+-.+ |
T Consensus 40 ~~~e~~-~~~-~~~v~s~d~~~~~~~~~~v~~v~~~~~~~~~~~i~t~----~G~~i~~T---~~H~~l~~~~------g 104 (537)
T 2cw8_A 40 GETEVL-EVS-GLEVPSFNRRTNKAELKRVKALIRHDYSGKVYTIRLK----SGRRIKIT---SGHSLFSVRN------G 104 (537)
T ss_dssp TTEEEE-ECC-SEEEEEECTTTCCEEEEEEEEEEEEEEEEEEEEEEET----TSCEEEEE---TTCEEEEEET------T
T ss_pred CCEEEE-ecC-CeEEEEEeCCCCeEEEEeeeEEEEEcCCCcEEEEEeC----CCCEEEEc---CCceEEEEEC------C
Confidence 444553 443 45788899754 4444444333 112 3678877764 36654332 2222222222 2
Q ss_pred c--eeeeeecCCCCEEEEE
Q 017962 328 K--AIPVTSLKVGDEVLLR 344 (363)
Q Consensus 328 ~--~vsVt~Lk~GD~VL~~ 344 (363)
+ .+..-+||+||.|.+-
T Consensus 105 ~~~~~~a~elk~GD~v~~~ 123 (537)
T 2cw8_A 105 ELVEVTGDELKPGDLVAVP 123 (537)
T ss_dssp EEEEEETTTCCTTCEEEEE
T ss_pred EEEEEEhhcCCCCCEEEEe
Confidence 2 2456789999999984
No 294
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=20.84 E-value=1.6e+02 Score=25.06 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=18.9
Q ss_pred HHHHHHhhcccCeEEEecCCHHHHH-HHH
Q 017962 135 QIFLEALEQGLGGIVLKVEDVKAVL-ALK 162 (363)
Q Consensus 135 ~~~~~~LE~G~dGVvl~~~d~~ei~-~l~ 162 (363)
+..-..+++++|||++.+.+.+.+. .++
T Consensus 55 ~~~~~l~~~~~dgiIi~~~~~~~~~~~l~ 83 (277)
T 3e61_A 55 GYLATFVSHNCTGMISTAFNENIIENTLT 83 (277)
T ss_dssp HHHHHHHHTTCSEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEecCChHHHHHHHH
Confidence 3334456799999999997666554 443
No 295
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.75 E-value=3.3e+02 Score=25.73 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=10.1
Q ss_pred ecCCCCEEEEEe
Q 017962 334 SLKVGDEVLLRV 345 (363)
Q Consensus 334 ~Lk~GD~VL~~~ 345 (363)
.|+|||.||+-.
T Consensus 213 ~lr~GDsllvD~ 224 (251)
T 3m9b_A 213 KLRPGDSLLVDT 224 (251)
T ss_dssp CCCTTCEEEECT
T ss_pred CCCCCCEEEEeC
Confidence 699999999854
No 296
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=20.71 E-value=2.7e+02 Score=26.13 Aligned_cols=15 Identities=13% Similarity=0.020 Sum_probs=12.3
Q ss_pred hHHHHHHHhCccEEE
Q 017962 23 QVMTAAVERGWNTFV 37 (363)
Q Consensus 23 ~~vt~AlEsG~~~~v 37 (363)
..+..|++.|+|++=
T Consensus 112 ~~ve~a~~~GAdaV~ 126 (304)
T 1to3_A 112 INAQAVKRDGAKALK 126 (304)
T ss_dssp CCHHHHHHTTCCEEE
T ss_pred hhHHHHHHcCCCEEE
Confidence 457899999999764
No 297
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=20.65 E-value=2.7e+02 Score=20.83 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=38.3
Q ss_pred CCceEEEeCCCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 94 QAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 94 ~~~~vvv~~~dW~iIPlEnliA~~q~~--~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..+.++++..-.. ..--.++..+... ...++......+ ....+++.|+++++.+|-+++++...
T Consensus 55 ~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~---~~~~~~~~g~~~~l~KP~~~~~l~~~ 120 (143)
T 2qv0_A 55 KVDAIFLDINIPS-LDGVLLAQNISQFAHKPFIVFITAWKE---HAVEAFELEAFDYILKPYQESRIINM 120 (143)
T ss_dssp CCSEEEECSSCSS-SCHHHHHHHHTTSTTCCEEEEEESCCT---THHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHccCCCceEEEEeCCHH---HHHHHHhCCcceEEeCCCCHHHHHHH
Confidence 4577777432111 1222344444332 334666555533 35677899999999999999887554
No 298
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=20.11 E-value=53 Score=24.67 Aligned_cols=39 Identities=15% Similarity=0.047 Sum_probs=26.7
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017962 122 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 161 (363)
Q Consensus 122 ~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l 161 (363)
..++......+ ......+++.|+++.+.+|-+++++...
T Consensus 76 ~~ii~~s~~~~-~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 114 (136)
T 1mvo_A 76 FPILMLTAKDE-EFDKVLGLELGADDYMTKPFSPREVNAR 114 (136)
T ss_dssp CCEEEEECTTC-CCCHHHHHHTTCCEEEESSCCHHHHHHH
T ss_pred CCEEEEECCCC-HHHHHHHHhCCCCEEEECCCCHHHHHHH
Confidence 44555444332 2344567899999999999999887544
No 299
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=20.02 E-value=68 Score=26.77 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=30.8
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017962 121 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 162 (363)
Q Consensus 121 ~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei~~l~ 162 (363)
...++...... +......+++.|++|++.+|-+++++.+.-
T Consensus 75 ~~~ii~lt~~~-~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i 115 (230)
T 2oqr_A 75 SVPVIMVTARD-SEIDKVVGLELGADDYVTKPYSARELIARI 115 (230)
T ss_dssp SCSEEEEECCH-HHHHHHHHHHHCCSCCCCSSCCHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 45666665554 455677889999999999999998875543
Done!