Query 017963
Match_columns 363
No_of_seqs 224 out of 377
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 07:43:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.1 1.3E-05 4.6E-10 65.8 9.7 67 122-188 38-105 (110)
2 2i68_A Protein EMRE; transmemb 98.1 6.9E-06 2.4E-10 70.4 7.4 67 122-188 38-105 (137)
3 2i68_A Protein EMRE; transmemb 95.7 0.025 8.5E-07 48.1 7.3 70 282-355 35-105 (137)
4 3b5d_A Multidrug transporter E 95.5 0.11 3.8E-06 42.1 10.1 38 317-354 66-104 (110)
5 3o7q_A L-fucose-proton symport 19.8 5E+02 0.017 23.5 20.1 28 48-75 155-183 (438)
6 3hd6_A Ammonium transporter RH 7.2 1.6E+03 0.055 22.3 14.2 168 45-222 91-272 (490)
7 2gfp_A EMRD, multidrug resista 7.2 1.1E+03 0.039 20.6 8.5 36 53-91 131-166 (375)
8 2l2t_A Receptor tyrosine-prote 7.1 4.9E+02 0.017 17.4 3.6 13 349-361 31-43 (44)
9 3fym_A Putative uncharacterize 6.6 1.4E+02 0.0049 23.8 0.8 18 40-57 101-118 (130)
10 2kog_A Vesicle-associated memb 6.3 99 0.0034 25.1 -0.4 30 3-33 55-84 (119)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.12 E-value=1.3e-05 Score=65.77 Aligned_cols=67 Identities=24% Similarity=0.357 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHH-HhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccC
Q 017963 122 FLSAADNLMYAYAYAYLPASTAALL-ASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDS 188 (363)
Q Consensus 122 ll~~~~n~ly~~gL~ylpvst~sli-~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~ 188 (363)
+..+...+++..+++++|.+.+.-+ ..+.++++++.++++++||+|+.|+.|+++..+|++++...+
T Consensus 38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4467778899999999999999777 899999999999999999999999999999999999886654
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.08 E-value=6.9e-06 Score=70.36 Aligned_cols=67 Identities=24% Similarity=0.357 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHH-HhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccC
Q 017963 122 FLSAADNLMYAYAYAYLPASTAALL-ASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDS 188 (363)
Q Consensus 122 ll~~~~n~ly~~gL~ylpvst~sli-~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~ 188 (363)
+.++...++|+.+++++|++.+.-+ ....+++++++++++++|++|+.++.|+++..+|++++...+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4477778899999999999987777 899999999999999999999999999999999999987654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=95.72 E-value=0.025 Score=48.09 Aligned_cols=70 Identities=10% Similarity=-0.108 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHH-HHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHhcc
Q 017963 282 LVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPI-TSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGN 355 (363)
Q Consensus 282 l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv-~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y~~ 355 (363)
+.++.+++++.+...++..+-.- .++.+.+..-|+ +.++++++|||++++.|++|.++++.|+......+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s----~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTG----IAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChh----HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34455555555544443332221 122221225577 55999999999999999999999999999876543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=95.50 E-value=0.11 Score=42.10 Aligned_cols=38 Identities=8% Similarity=-0.071 Sum_probs=32.6
Q ss_pred hHHH-HHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHhc
Q 017963 317 RVPI-TSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYG 354 (363)
Q Consensus 317 ~lPv-~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y~ 354 (363)
.-|+ +.++++++|||++|..|++|.++++.|+......
T Consensus 66 ~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 66 VGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4466 6699999999999999999999999999876543
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=19.79 E-value=5e+02 Score=23.55 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcchhhhhhhHHhH-hcCCc
Q 017963 48 LVLSSAAMLVAFPASSLLSRVYY-ANGGT 75 (363)
Q Consensus 48 ~~~~~~~~~~g~~~~~Ll~r~y~-~~gg~ 75 (363)
..+.....-+|...++++..+-. +++|+
T Consensus 155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 45566666777788888877776 55553
No 6
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=7.24 E-value=1.6e+03 Score=22.32 Aligned_cols=168 Identities=7% Similarity=-0.059 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhcchhhhhhhHHhHh-cCCcch-HHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHHHHH
Q 017963 45 WILLVLSSAAMLVAFPASSLLSRVYYA-NGGTSK-WIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGF 122 (363)
Q Consensus 45 ~~~~~~~~~~~~~g~~~~~Ll~r~y~~-~gg~~~-w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~~Gl 122 (363)
|=-+..|.++...+---+.|+..++.. ++|+-. .+-.+.| +-|.....-+.. -.-.|+..+...++.. ++..+
T Consensus 91 ~ssv~~n~l~~a~~~Qwa~l~~g~~~~~~~g~ip~~~~~~fq-~~Faa~t~~Ivs---GAvaeR~k~~~~li~~-~l~~~ 165 (490)
T 3hd6_A 91 FSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVGVENLIN-ADFCVASVCVAF---GAVLGKVSPIQLLIMT-FFQVT 165 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCBTTTBEECCHHHHHH-HHHHHHHHHHHH---HHHTTSSCHHHHHHHH-HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHHHHH-HHHHHHHHHHHH---HHHHhcccHHHHHHHH-HHHHH
Confidence 556778888888887778888888664 556543 3333444 333333222221 0112222333333332 34456
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccc-------cHHHHHHHHHHHHHHHHh-----hccCCC
Q 017963 123 LSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKL-------NAAMINAVVIITAAMTII-----ALDSDS 190 (363)
Q Consensus 123 l~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~-------t~~~i~svvllt~Gavll-----~~~~~~ 190 (363)
.+..+.++|-..+.+.|.+-..++-...-.+....+.++ ++|- ....--++.+.++|+.++ ++++.+
T Consensus 166 vY~~~~w~~L~~lG~~DFAGs~vVH~~gG~aaLa~a~vL-G~R~~~~~~~~~~~~~hn~~~a~LGt~lLW~GWfGFN~gs 244 (490)
T 3hd6_A 166 LFAVNEFILLNLLKVKDAGGSMTIHTFGAYFGLTVTRIL-YRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAI 244 (490)
T ss_dssp HHHHHHHHHHTTSCCCCTTCTTTTHHHHHHHHHHHHHHT-CCTTGGGGTTTSSCCHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHhhhHHHHHhccCceeecCceeeeHHHHHHHHHHHHhc-CCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhchhh
Confidence 666677766556777888887777777777666666554 4431 111235778888898877 344432
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 017963 191 DRYGNITDRQYIMGFVWDILGSALHGLIFALS 222 (363)
Q Consensus 191 ~~~~~~s~~~~~~G~~l~L~Aa~l~gl~l~l~ 222 (363)
.. .+.....-++=|..|++..++-..+.
T Consensus 245 ~~----~~~~~~~a~~NT~lAaAag~lt~~~~ 272 (490)
T 3hd6_A 245 SY----HGDSQHRAAINTYCSLAACVLTSVAI 272 (490)
T ss_dssp CS----SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11122233455555666666644443
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=7.17 E-value=1.1e+03 Score=20.55 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=16.9
Q ss_pred HHHHhcchhhhhhhHHhHhcCCcchHHHHHHHhhhhHHH
Q 017963 53 AAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLT 91 (363)
Q Consensus 53 ~~~~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~ag~p~l 91 (363)
...-+|...++++..+-.++.| |-..+.-.+...++
T Consensus 131 ~~~~~g~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~ 166 (375)
T 2gfp_A 131 MGILVSPLLAPLIGGLLDTMWN---WRACYLFLLVLCAG 166 (375)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhcc---HHHHHHHHHHHHHH
Confidence 3334455555555554443322 55555544444443
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.14 E-value=4.9e+02 Score=17.37 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=6.8
Q ss_pred HHHHhcccCCCCC
Q 017963 349 GSYIYGNSSTPKD 361 (363)
Q Consensus 349 ~~y~y~~~~~~~~ 361 (363)
..|.-....++||
T Consensus 31 ~~~~RRRr~~~kr 43 (44)
T 2l2t_A 31 AVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHTTCSSCCC
T ss_pred HHHhhhhhhhhcc
Confidence 3444555555555
No 9
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=6.57 E-value=1.4e+02 Score=23.78 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHHh
Q 017963 40 KPISHWILLVLSSAAMLV 57 (363)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~ 57 (363)
+...|+..+++-++++++
T Consensus 101 ~~~~~~~~~i~~~~~i~i 118 (130)
T 3fym_A 101 KSKEPIQLLVIMGITVLI 118 (130)
T ss_dssp ------------------
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 333333333333333333
No 10
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=6.25 E-value=99 Score=25.07 Aligned_cols=30 Identities=23% Similarity=0.181 Sum_probs=15.5
Q ss_pred ccccccccccccCCCCCchhhhhhhcccccc
Q 017963 3 PLLEGGEIMDEVSPMPSVSLWDRISNSKTLA 33 (363)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (363)
-++|-||-.|+-.... ..|.+.+..++..+
T Consensus 55 kvLeRGEkLd~L~~KT-e~L~~~S~~F~k~A 84 (119)
T 2kog_A 55 KVLERDQKLSELDDRA-DALQAGASQFETSA 84 (119)
T ss_dssp HHHCCCCSSCCCCSCC-SCCCSSSHHHHHHH
T ss_pred HHHHcccHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3567787776655422 23444444444443
Done!