Query 017963
Match_columns 363
No_of_seqs 224 out of 377
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 07:43:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017963.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017963hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 11.7 1.1E+02 0.0081 16.7 3.0 18 344-361 9-26 (27)
2 d1u19a_ f.13.1.2 (A:) Rhodopsi 5.3 1.9E+02 0.014 23.5 3.2 32 40-71 33-64 (348)
3 d1ygya4 d.81.2.2 (A:317-451) D 5.2 90 0.0065 23.5 0.8 10 7-16 1-10 (135)
4 d3bz7a1 b.34.3.1 (A:34-79) Myo 4.8 70 0.0051 19.4 -0.1 12 5-16 14-25 (46)
5 d2axtj1 f.23.32.1 (J:7-40) Pho 4.7 2.7E+02 0.02 16.1 2.5 20 339-358 10-29 (34)
6 d1iwga8 f.35.1.1 (A:513-566,A: 3.1 9.7E+02 0.071 18.3 10.9 43 307-349 80-125 (222)
7 d1pv7a_ f.38.1.2 (A:) Lactose 3.1 9.6E+02 0.07 18.2 16.0 8 222-229 369-376 (417)
8 d1fftc_ f.25.1.1 (C:) Cytochro 2.5 8.6E+02 0.063 18.1 4.7 20 110-129 80-99 (185)
9 d1duxc_ a.4.5.21 (C:) Elk-1 {H 2.3 2.6E+02 0.019 19.5 0.9 8 66-73 60-67 (86)
10 d1ppjd2 f.23.11.1 (D:196-241) 2.2 6.1E+02 0.044 15.3 2.6 20 335-354 10-29 (46)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.67 E-value=1.1e+02 Score=16.68 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcccCCCCC
Q 017963 344 TFWGFGSYIYGNSSTPKD 361 (363)
Q Consensus 344 vl~G~~~y~y~~~~~~~~ 361 (363)
.+.|+..-.|++|++...
T Consensus 9 tl~glf~aayqqykrpne 26 (27)
T d2e74g1 9 TLGGLFYAAYQQYKRPNE 26 (27)
T ss_dssp HHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 455555558888887643
No 2
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.32 E-value=1.9e+02 Score=23.49 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=17.1
Q ss_pred CCchhHHHHHHHHHHHHhcchhhhhhhHHhHh
Q 017963 40 KPISHWILLVLSSAAMLVAFPASSLLSRVYYA 71 (363)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~g~~~~~Ll~r~y~~ 71 (363)
.++..-++.++..++.++|-.+=.+.....+.
T Consensus 33 ~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~ 64 (348)
T d1u19a_ 33 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQ 64 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHeehhhhc
Confidence 34445555566666666665555544444443
No 3
>d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase SerA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.18 E-value=90 Score=23.49 Aligned_cols=10 Identities=50% Similarity=1.019 Sum_probs=5.1
Q ss_pred ccccccccCC
Q 017963 7 GGEIMDEVSP 16 (363)
Q Consensus 7 ~~~~~~~~~~ 16 (363)
||||||+..|
T Consensus 1 ~g~~~~~l~P 10 (135)
T d1ygya4 1 GGVVNEEVAP 10 (135)
T ss_dssp STTSCTTTTT
T ss_pred CCccccchhh
Confidence 4555555544
No 4
>d3bz7a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Dictyostelium discoideum [TaxId: 44689]}
Probab=4.78 E-value=70 Score=19.44 Aligned_cols=12 Identities=50% Similarity=0.639 Sum_probs=9.9
Q ss_pred ccccccccccCC
Q 017963 5 LEGGEIMDEVSP 16 (363)
Q Consensus 5 ~~~~~~~~~~~~ 16 (363)
.|-|||..|+|.
T Consensus 14 yecgeivsetsd 25 (46)
T d3bz7a1 14 YECGEIVSETSD 25 (46)
T ss_dssp CEEEEEEEECSS
T ss_pred chhcceeecccC
Confidence 578999999875
No 5
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.66 E-value=2.7e+02 Score=16.06 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhcccCC
Q 017963 339 LSLIVTFWGFGSYIYGNSST 358 (363)
Q Consensus 339 ig~~lvl~G~~~y~y~~~~~ 358 (363)
+++..++.=+..|+|+.|..
T Consensus 10 v~G~~vi~~vG~FfYGsYsG 29 (34)
T d2axtj1 10 VAGMGVIVIVGLFFYGAYAG 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHTTTS
T ss_pred hhhhhhHhheeeeeeeeecc
Confidence 34444444456677777753
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.09 E-value=9.7e+02 Score=18.33 Aligned_cols=43 Identities=12% Similarity=-0.016 Sum_probs=27.6
Q ss_pred hhhHHHHHHhhHHHHH---HHHHHHhCCCCchhHHHHHHHHHHHHH
Q 017963 307 TVLAGILNAIRVPITS---IAAVILLHDPMSGFKILSLIVTFWGFG 349 (363)
Q Consensus 307 sL~a~vi~~~~lPv~~---ilAvl~f~d~~~~~k~ig~~lvl~G~~ 349 (363)
|....++....+|++. +.+..+.+.++|....++.++.+....
T Consensus 80 S~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 80 SWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp SSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchhhhhh
Confidence 3445555555666643 556666799999988887777654443
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.07 E-value=9.6e+02 Score=18.23 Aligned_cols=8 Identities=0% Similarity=0.210 Sum_probs=3.9
Q ss_pred HHHHHHHh
Q 017963 222 SELVFVKL 229 (363)
Q Consensus 222 ~q~~~kkv 229 (363)
.....++.
T Consensus 369 ~G~l~~~~ 376 (417)
T d1pv7a_ 369 AGNMYESI 376 (417)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44445554
No 8
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=2.46 E-value=8.6e+02 Score=18.08 Aligned_cols=20 Identities=5% Similarity=-0.110 Sum_probs=10.0
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 017963 110 DLKLTLAYIVLGFLSAADNL 129 (363)
Q Consensus 110 ~~~l~~~~~~~Gll~~~~n~ 129 (363)
.++.+.+.+.+|+.....|.
T Consensus 80 ~~~~L~~t~~lG~~Fl~~q~ 99 (185)
T d1fftc_ 80 VISWLALTWLFGAGFIGMEI 99 (185)
T ss_dssp GTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555566655544444
No 9
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.29 E-value=2.6e+02 Score=19.52 Aligned_cols=8 Identities=38% Similarity=0.750 Sum_probs=6.3
Q ss_pred hHHhHhcC
Q 017963 66 SRVYYANG 73 (363)
Q Consensus 66 ~r~y~~~g 73 (363)
+|+||++|
T Consensus 60 LRyyY~~~ 67 (86)
T d1duxc_ 60 LRYYYDKN 67 (86)
T ss_dssp HHHHHTTT
T ss_pred HHHHHhcc
Confidence 78888874
No 10
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.21 E-value=6.1e+02 Score=15.32 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHhc
Q 017963 335 GFKILSLIVTFWGFGSYIYG 354 (363)
Q Consensus 335 ~~k~ig~~lvl~G~~~y~y~ 354 (363)
+.|.+..+.++.+++.|...
T Consensus 10 G~Kv~~~l~~l~~l~yy~KR 29 (46)
T d1ppjd2 10 GLKMLLMMGLLLPLVYAMKR 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777554
Done!