Query 017965
Match_columns 363
No_of_seqs 225 out of 377
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 07:45:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a9a_C Translation machinery-a 99.6 6.4E-17 2.2E-21 141.5 4.9 65 208-276 10-76 (142)
2 2rhk_C Cleavage and polyadenyl 99.5 4.2E-15 1.4E-19 116.0 3.2 64 83-199 9-72 (72)
3 2d9n_A Cleavage and polyadenyl 99.5 1.2E-14 4.2E-19 114.0 4.6 62 83-197 3-64 (77)
4 2cqe_A KIAA1064 protein; CCCH 99.2 4.7E-12 1.6E-16 104.0 3.4 55 85-196 8-62 (98)
5 1m9o_A Tristetraproline; Cys3H 99.0 2.2E-10 7.4E-15 88.4 3.0 69 85-196 7-76 (77)
6 3d2q_A Muscleblind-like protei 98.9 4.7E-10 1.6E-14 86.6 2.2 60 89-195 5-65 (70)
7 2e5s_A Otthump00000018578; ZF- 98.8 5.5E-10 1.9E-14 91.9 1.1 64 85-195 14-79 (98)
8 3d2n_A Muscleblind-like protei 98.5 1.6E-08 5.4E-13 81.1 0.9 58 89-195 8-66 (83)
9 2rpp_A Muscleblind-like protei 98.4 1.4E-07 4.8E-12 76.6 2.6 58 89-195 16-74 (89)
10 3u9g_A Zinc finger CCCH-type a 97.0 0.00061 2.1E-08 63.8 5.1 91 91-200 90-203 (229)
11 2cqe_A KIAA1064 protein; CCCH 96.2 0.0013 4.5E-08 53.7 1.6 27 90-116 36-63 (98)
12 2d9n_A Cleavage and polyadenyl 95.9 0.0033 1.1E-07 48.9 2.3 30 156-196 6-35 (77)
13 3d2q_A Muscleblind-like protei 95.5 0.0035 1.2E-07 47.9 1.1 26 88-114 40-65 (70)
14 1m9o_A Tristetraproline; Cys3H 95.0 0.0041 1.4E-07 47.4 0.0 28 87-114 47-75 (77)
15 2rhk_C Cleavage and polyadenyl 94.5 0.011 3.7E-07 45.7 1.4 26 89-115 43-69 (72)
16 2d9m_A Zinc finger CCCH-type d 94.4 0.018 6.2E-07 45.0 2.4 27 89-115 19-45 (69)
17 2e5s_A Otthump00000018578; ZF- 94.3 0.014 4.8E-07 47.7 1.5 28 87-115 53-80 (98)
18 3u1l_A PRE-mRNA-splicing facto 93.3 0.022 7.6E-07 53.1 1.1 27 159-196 69-95 (240)
19 3d2n_A Muscleblind-like protei 93.0 0.027 9.3E-07 44.8 1.1 26 89-115 42-67 (83)
20 2fc6_A Nuclear, target of EGR1 92.0 0.045 1.5E-06 40.4 1.0 27 158-194 18-44 (50)
21 3u1l_A PRE-mRNA-splicing facto 89.8 0.082 2.8E-06 49.2 0.9 28 90-117 70-97 (240)
22 2fc6_A Nuclear, target of EGR1 88.5 0.13 4.6E-06 37.8 1.0 28 88-115 18-46 (50)
23 2lhn_A Nuclear polyadenylated 88.2 0.087 3E-06 42.0 0.0 27 160-202 52-78 (80)
24 2rpp_A Muscleblind-like protei 88.2 0.14 4.8E-06 41.3 1.1 26 89-115 50-75 (89)
25 1lup_A GSMTX2; inhibitor cyste 84.2 0.43 1.5E-05 32.0 1.6 19 176-201 4-22 (31)
26 2d9m_A Zinc finger CCCH-type d 81.5 0.58 2E-05 36.5 1.7 23 161-194 21-43 (69)
27 3u9g_A Zinc finger CCCH-type a 61.9 2.7 9.3E-05 39.4 1.5 27 89-116 174-200 (229)
28 3v33_A Ribonuclease ZC3H12A; r 61.0 2 6.8E-05 40.0 0.4 30 82-113 184-213 (223)
29 4fp9_B Mterf domain-containing 40.6 10 0.00035 36.7 1.8 19 232-250 260-278 (335)
30 2ca6_A RAN GTPase-activating p 37.1 7.1 0.00024 36.1 -0.0 10 342-351 376-385 (386)
31 2h9x_A Toxin CGNA; beta sheet; 34.5 16 0.00055 26.5 1.5 19 176-194 22-40 (47)
32 1sh1_A Neurotoxin I; NMR {Stic 28.3 11 0.00037 27.5 -0.3 18 176-193 21-38 (48)
33 1dj7_A Ferredoxin thioredoxin 26.2 16 0.00056 30.9 0.4 12 212-223 101-112 (117)
34 4g7w_A Putative uncharacterize 25.7 11 0.00037 32.3 -0.8 19 170-189 62-83 (160)
35 4a9a_C Translation machinery-a 24.3 6.7 0.00023 34.3 -2.4 20 264-283 71-91 (142)
36 1atx_A ATX IA; SEA anemone tox 24.0 19 0.00064 26.1 0.3 16 176-191 22-37 (46)
37 3pwf_A Rubrerythrin; non heme 22.5 33 0.0011 30.0 1.7 25 165-193 122-149 (170)
38 4g7x_A Putative uncharacterize 22.4 8.3 0.00028 31.2 -2.0 19 170-189 45-66 (105)
No 1
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.65 E-value=6.4e-17 Score=141.53 Aligned_cols=65 Identities=31% Similarity=0.496 Sum_probs=53.2
Q ss_pred HHhhccCCCcHHHHHHHhccCCC--CCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhcC
Q 017965 208 LEEESDRLPIEDEIEDQRGKLKS--TTPMTTELFMQWKKKKMEERNAGLAAQQAERAKNDRMSGRELFLSN 276 (363)
Q Consensus 208 ~e~~~~eisLEE~IE~ER~kL~~--gTPVT~EsF~~WKkkk~~Ek~~~~~~~k~era~k~~LSGRELFe~d 276 (363)
+.+..++||||||||.||++|++ +||||+|||++||++++.++.+..++.+ .+.++|||+||+.+
T Consensus 10 ~~e~~~~ItlEe~iE~ER~kL~~~nlTpVT~EtF~~WKk~k~~ek~~~~~~~~----~kk~~tGRei~~~g 76 (142)
T 4a9a_C 10 SLEKQPKITLEEFIETERGKLDKSKLTPITIANFAQWKKDHVIAKINAEKKLS----SKRKPTGREIILKM 76 (142)
T ss_dssp -CCSCCCCCHHHHHHTTGGGSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHH----TTSCCCHHHHHHHH
T ss_pred HHhcCCcCcHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhHHHHHhc
Confidence 34558999999999999999954 8999999999999999998866654332 34568999999874
No 2
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.51 E-value=4.2e-15 Score=115.98 Aligned_cols=64 Identities=30% Similarity=0.693 Sum_probs=53.4
Q ss_pred CCCCCCCchhhhhhhcccccCCCCCccCcccchhhcchhhhcccccCCccccccccHHHHHHHHHhhhcccCCCCChhhh
Q 017965 83 PVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDKRDGETMEDWDQETLEKVVESKKMEYNQNKPTEIV 162 (363)
Q Consensus 83 p~gvDpKsv~C~fFk~G~C~KG~kCKFSHDl~~~rk~eK~dlY~D~R~~dtmd~WD~~kL~~Vv~~Khg~~~~~~~t~iv 162 (363)
..|..+++++|.||.+|.|.+|+.|+|||+++.. ..++
T Consensus 9 ~~~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~------------------------------------------~~~~ 46 (72)
T 2rhk_C 9 SHMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMT------------------------------------------KMSE 46 (72)
T ss_dssp CSSSCCCCSBCHHHHTTCCCCGGGSSSBCSCCTT------------------------------------------SCCB
T ss_pred ccCCCCcCeeCHHHhcCCCCCCCCCCCccccccc------------------------------------------cCCc
Confidence 4678899999999999999999999999997641 2348
Q ss_pred hHHHHHHHHhcccCcccccCCCCCcccccccCCCccc
Q 017965 163 CKYFLEAVEKKQYGWFWVCPNGGKECHYRHALPPGYI 199 (363)
Q Consensus 163 CK~FleAvE~~kYGWfW~CPnGGd~C~YrH~LPpG~V 199 (363)
|+|||. +|.|++ +.|+|+|.+|++-|
T Consensus 47 C~~f~~---------~G~C~~--~~C~y~H~~p~~k~ 72 (72)
T 2rhk_C 47 CYFYSK---------FGECSN--KECPFLHIDPESKI 72 (72)
T ss_dssp CHHHHH---------HSCCSB--TTCCSBCCCCC---
T ss_pred ccccCC---------CCCCCC--CCeeccCCCccccC
Confidence 999998 479999 79999999998643
No 3
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-14 Score=114.04 Aligned_cols=62 Identities=26% Similarity=0.686 Sum_probs=53.0
Q ss_pred CCCCCCCchhhhhhhcccccCCCCCccCcccchhhcchhhhcccccCCccccccccHHHHHHHHHhhhcccCCCCChhhh
Q 017965 83 PVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDKRDGETMEDWDQETLEKVVESKKMEYNQNKPTEIV 162 (363)
Q Consensus 83 p~gvDpKsv~C~fFk~G~C~KG~kCKFSHDl~~~rk~eK~dlY~D~R~~dtmd~WD~~kL~~Vv~~Khg~~~~~~~t~iv 162 (363)
|.+...|+++|.||.+|.|.+|+.|+|||+++.. +..+
T Consensus 3 p~~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~------------------------------------------~~~~ 40 (77)
T 2d9n_A 3 SGSSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMT------------------------------------------KMPE 40 (77)
T ss_dssp CCCSCCTTSBCHHHHTTCCSCTTSSSSBCSCCTT------------------------------------------TSCB
T ss_pred CCCCCCcceeCHhHccCcCCCCCCCCCccccccC------------------------------------------cCCC
Confidence 6677899999999999999999999999998741 1238
Q ss_pred hHHHHHHHHhcccCcccccCCCCCcccccccCCCc
Q 017965 163 CKYFLEAVEKKQYGWFWVCPNGGKECHYRHALPPG 197 (363)
Q Consensus 163 CK~FleAvE~~kYGWfW~CPnGGd~C~YrH~LPpG 197 (363)
|+|||. | +.|+ | +.|+|+|.+|+.
T Consensus 41 C~~f~~------~---G~C~-~-~~C~f~H~~~~~ 64 (77)
T 2d9n_A 41 CYFYSK------F---GECS-N-KECPFLHIDPES 64 (77)
T ss_dssp CHHHHH------T---CCCC-C-SSCSSBCCCTTS
T ss_pred CcccCC------C---CccC-C-CCeeccCCCccc
Confidence 999998 3 5999 5 899999999974
No 4
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.21 E-value=4.7e-12 Score=103.98 Aligned_cols=55 Identities=27% Similarity=0.688 Sum_probs=47.9
Q ss_pred CCCCCchhhhhhhcccccCCCCCccCcccchhhcchhhhcccccCCccccccccHHHHHHHHHhhhcccCCCCChhhhhH
Q 017965 85 GVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDKRDGETMEDWDQETLEKVVESKKMEYNQNKPTEIVCK 164 (363)
Q Consensus 85 gvDpKsv~C~fFk~G~C~KG~kCKFSHDl~~~rk~eK~dlY~D~R~~dtmd~WD~~kL~~Vv~~Khg~~~~~~~t~ivCK 164 (363)
.+.+|+++|.||.+|.|.+|++|+|+|+ ..+|+
T Consensus 8 ~~~~k~~lC~~f~~G~C~~G~~C~f~H~-----------------------------------------------~~~C~ 40 (98)
T 2cqe_A 8 ELPKKRELCKFYITGFCARAENCPYMHG-----------------------------------------------DFPCK 40 (98)
T ss_dssp CCSCCCSBCTTTTTTCCSCSTTCSSBSS-----------------------------------------------SSBCS
T ss_pred CCCCCCccCcccccCcCCCCCCCCCCCC-----------------------------------------------CCcCc
Confidence 4568999999999999999999999999 25799
Q ss_pred HHHHHHHhcccCcccccCCCCCcccccccCCC
Q 017965 165 YFLEAVEKKQYGWFWVCPNGGKECHYRHALPP 196 (363)
Q Consensus 165 ~FleAvE~~kYGWfW~CPnGGd~C~YrH~LPp 196 (363)
||+. .+.|++| +.|+|.|.+.+
T Consensus 41 ~f~~---------~G~C~~G-~~C~f~H~~~~ 62 (98)
T 2cqe_A 41 LYHT---------TGNCING-DDCMFSHDPLT 62 (98)
T ss_dssp HHHH---------TSCCSSC-TTCSSBCCCCC
T ss_pred Cccc---------CCcCCCC-CCCcccCCCCc
Confidence 9975 2689998 99999999654
No 5
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.96 E-value=2.2e-10 Score=88.37 Aligned_cols=69 Identities=30% Similarity=0.643 Sum_probs=28.9
Q ss_pred CCCCCchhhhhh-hcccccCCCCCccCcccchhhcchhhhcccccCCccccccccHHHHHHHHHhhhcccCCCCChhhhh
Q 017965 85 GVDPKSILCEFF-KAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDKRDGETMEDWDQETLEKVVESKKMEYNQNKPTEIVC 163 (363)
Q Consensus 85 gvDpKsv~C~fF-k~G~C~KG~kCKFSHDl~~~rk~eK~dlY~D~R~~dtmd~WD~~kL~~Vv~~Khg~~~~~~~t~ivC 163 (363)
....|+.+|.|| +.|.|..|++|+|+|+...-|... .|. .....+|
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~----------------------------~~~-----~~k~~~C 53 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN----------------------------RHP-----KYKTELC 53 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-------------------------------------------
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc----------------------------ccc-----cccCCcc
Confidence 346799999999 599999999999999987544321 011 1223789
Q ss_pred HHHHHHHHhcccCcccccCCCCCcccccccCCC
Q 017965 164 KYFLEAVEKKQYGWFWVCPNGGKECHYRHALPP 196 (363)
Q Consensus 164 K~FleAvE~~kYGWfW~CPnGGd~C~YrH~LPp 196 (363)
++|+. + ..||+| +.|+|.|..++
T Consensus 54 ~~f~~------~---G~C~~G-~~C~f~H~~~e 76 (77)
T 1m9o_A 54 HKFKL------Q---GRCPYG-SRCHFIHNPTE 76 (77)
T ss_dssp ---------------------------------
T ss_pred cchhh------C---cCCCCc-CcCCCCCCCCC
Confidence 98864 3 489998 99999998764
No 6
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.88 E-value=4.7e-10 Score=86.56 Aligned_cols=60 Identities=25% Similarity=0.641 Sum_probs=46.8
Q ss_pred CchhhhhhhcccccCCC-CCccCcccchhhcchhhhcccccCCccccccccHHHHHHHHHhhhcccCCCCChhhhhHHHH
Q 017965 89 KSILCEFFKAGQCQKGF-KCKFSHDLNIQRKGEKIDIYSDKRDGETMEDWDQETLEKVVESKKMEYNQNKPTEIVCKYFL 167 (363)
Q Consensus 89 Ksv~C~fFk~G~C~KG~-kCKFSHDl~~~rk~eK~dlY~D~R~~dtmd~WD~~kL~~Vv~~Khg~~~~~~~t~ivCK~Fl 167 (363)
+..+|.+|.+|.|.+|+ .|+|||+..... . ......-.||++||
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~--------~---------------------------~~~~~~~~vC~~fl 49 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADSTM--------I---------------------------DTNDNTVTVCMDYI 49 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTSC--------C---------------------------BTTTTEEEBCHHHH
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCccccc--------c---------------------------cccCCcceeccccC
Confidence 34689999999999999 599999986410 0 01124567999999
Q ss_pred HHHHhcccCcccccCCCCCcccccccCC
Q 017965 168 EAVEKKQYGWFWVCPNGGKECHYRHALP 195 (363)
Q Consensus 168 eAvE~~kYGWfW~CPnGGd~C~YrH~LP 195 (363)
. ..|.+| +|+|.|..|
T Consensus 50 k----------G~C~r~--~C~y~H~~~ 65 (70)
T 3d2q_A 50 K----------GRCSRE--KCKYFHPPA 65 (70)
T ss_dssp T----------TCCCCT--TCCSBCCCH
T ss_pred c----------CCCCCC--CcCeeCCHH
Confidence 7 599998 899999765
No 7
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=5.5e-10 Score=91.90 Aligned_cols=64 Identities=25% Similarity=0.565 Sum_probs=50.4
Q ss_pred CCCC-CchhhhhhhcccccCCC-CCccCcccchhhcchhhhcccccCCccccccccHHHHHHHHHhhhcccCCCCChhhh
Q 017965 85 GVDP-KSILCEFFKAGQCQKGF-KCKFSHDLNIQRKGEKIDIYSDKRDGETMEDWDQETLEKVVESKKMEYNQNKPTEIV 162 (363)
Q Consensus 85 gvDp-Ksv~C~fFk~G~C~KG~-kCKFSHDl~~~rk~eK~dlY~D~R~~dtmd~WD~~kL~~Vv~~Khg~~~~~~~t~iv 162 (363)
.++| +..+|.||.+|.|.+|+ .|+|||+++... + ......-.|
T Consensus 14 ~~~~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~--------~---------------------------~~~~~~~~v 58 (98)
T 2e5s_A 14 LLRTDKLEVCREFQRGNCARGETDCRFAHPADSTM--------I---------------------------DTSDNTVTV 58 (98)
T ss_dssp CCCSSEEEBCSHHHHTCCSSHHHHCSSBCCSSCCS--------C---------------------------CTTTCEEEB
T ss_pred ccChhhhhhhHHHhcCcCCCCCCCCCCcCCchhcc--------c---------------------------cccCCcccc
Confidence 3455 56799999999999999 899999987421 0 012356789
Q ss_pred hHHHHHHHHhcccCcccccCCCCCcccccccCC
Q 017965 163 CKYFLEAVEKKQYGWFWVCPNGGKECHYRHALP 195 (363)
Q Consensus 163 CK~FleAvE~~kYGWfW~CPnGGd~C~YrH~LP 195 (363)
|+|||. ..|.+| +|+|.|..|
T Consensus 59 C~~flk----------G~C~r~--~C~y~H~~~ 79 (98)
T 2e5s_A 59 CMDYIK----------GRCMRE--KCKYFHPPA 79 (98)
T ss_dssp CHHHHH----------TCCCCT--TCCSBCCCH
T ss_pred chhhcc----------CCCCCC--CcCccCChH
Confidence 999998 599998 899999766
No 8
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.52 E-value=1.6e-08 Score=81.07 Aligned_cols=58 Identities=28% Similarity=0.545 Sum_probs=46.8
Q ss_pred CchhhhhhhcccccCCC-CCccCcccchhhcchhhhcccccCCccccccccHHHHHHHHHhhhcccCCCCChhhhhHHHH
Q 017965 89 KSILCEFFKAGQCQKGF-KCKFSHDLNIQRKGEKIDIYSDKRDGETMEDWDQETLEKVVESKKMEYNQNKPTEIVCKYFL 167 (363)
Q Consensus 89 Ksv~C~fFk~G~C~KG~-kCKFSHDl~~~rk~eK~dlY~D~R~~dtmd~WD~~kL~~Vv~~Khg~~~~~~~t~ivCK~Fl 167 (363)
+..+|.+|.+|.|..|+ .|+|||+++.- | ....+-+||.+||
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~~-----------------~--------------------~~~~~~~vC~dfl 50 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSKSC-----------------Q--------------------VENGRVIACFDSL 50 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCTTC-----------------C--------------------EETTEEECCHHHH
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCccc-----------------c--------------------ccCCceeehhHhh
Confidence 45689999999999997 99999998631 0 0024578999999
Q ss_pred HHHHhcccCcccccCCCCCcccccccCC
Q 017965 168 EAVEKKQYGWFWVCPNGGKECHYRHALP 195 (363)
Q Consensus 168 eAvE~~kYGWfW~CPnGGd~C~YrH~LP 195 (363)
- ..|.+| +|+|.|.++
T Consensus 51 k----------G~C~r~--~C~y~H~~~ 66 (83)
T 3d2n_A 51 K----------GRCSRE--NCKYLHPPP 66 (83)
T ss_dssp T----------TCCCCS--SCSSCCCCH
T ss_pred h----------ccccCC--CcceeCChH
Confidence 7 599997 899999866
No 9
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.35 E-value=1.4e-07 Score=76.65 Aligned_cols=58 Identities=26% Similarity=0.535 Sum_probs=47.3
Q ss_pred CchhhhhhhcccccCCC-CCccCcccchhhcchhhhcccccCCccccccccHHHHHHHHHhhhcccCCCCChhhhhHHHH
Q 017965 89 KSILCEFFKAGQCQKGF-KCKFSHDLNIQRKGEKIDIYSDKRDGETMEDWDQETLEKVVESKKMEYNQNKPTEIVCKYFL 167 (363)
Q Consensus 89 Ksv~C~fFk~G~C~KG~-kCKFSHDl~~~rk~eK~dlY~D~R~~dtmd~WD~~kL~~Vv~~Khg~~~~~~~t~ivCK~Fl 167 (363)
+.-+|.+|.+|.|..|+ .|+|||+++.. .|+ ..+-+||.+||
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~~-------------------~v~------------------~~~~~vC~dfl 58 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHPPKSC-------------------QVE------------------NGRVIACFDSL 58 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCCCSSS-------------------CCB------------------TTBEEBCHHHH
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCCCccc-------------------ccc------------------CCceeeehhhh
Confidence 46689999999999998 99999998641 011 13578999999
Q ss_pred HHHHhcccCcccccCCCCCcccccccCC
Q 017965 168 EAVEKKQYGWFWVCPNGGKECHYRHALP 195 (363)
Q Consensus 168 eAvE~~kYGWfW~CPnGGd~C~YrH~LP 195 (363)
- ..|.++ .|+|.|.+|
T Consensus 59 k----------G~C~r~--~Cky~H~~~ 74 (89)
T 2rpp_A 59 K----------GRCSRE--NCKYLHPPT 74 (89)
T ss_dssp H----------TCCCCT--TCCSBCCCH
T ss_pred h----------CcCCCC--CcceecCHH
Confidence 7 599997 899999876
No 10
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.01 E-value=0.00061 Score=63.83 Aligned_cols=91 Identities=23% Similarity=0.386 Sum_probs=57.6
Q ss_pred hhhhhhhcccc----cCCCCCccCcccchhhcchhhhcccccCCccccccccHHHHHHHHHhh-----------------
Q 017965 91 ILCEFFKAGQC----QKGFKCKFSHDLNIQRKGEKIDIYSDKRDGETMEDWDQETLEKVVESK----------------- 149 (363)
Q Consensus 91 v~C~fFk~G~C----~KG~kCKFSHDl~~~rk~eK~dlY~D~R~~dtmd~WD~~kL~~Vv~~K----------------- 149 (363)
=+|.||..|.| ..+..||||||+....-..-.. .-..+.-+++-|.-.+.+.
T Consensus 90 HLCK~~l~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk-------~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~YkG~g~ 162 (229)
T 3u9g_A 90 HLCKLNLLGRCHYAQSQRNLCKYSHDVLSEQNFQILK-------NHELSGLNQEELACLLVQSDPFFLPEICKSYKGEGR 162 (229)
T ss_dssp CCCHHHHTTCCGGGTCCSSCCSSCSCTTCHHHHHHHH-------HTTCTTCCHHHHHHHHHTTCGGGSCCBCTTCCCSSS
T ss_pred eechhhhcCcCCcccCCCCCcccccccCchhHHHHHH-------HcCcccCCHhHhhheeccCCCccCchHHHHhCCCCC
Confidence 47999999999 3568899999997541111110 0134556677777776665
Q ss_pred hcc--cCCCCChhhhhHHHHHHHHhcccCcccccCCCCCcccccccCCCcccc
Q 017965 150 KME--YNQNKPTEIVCKYFLEAVEKKQYGWFWVCPNGGKECHYRHALPPGYIL 200 (363)
Q Consensus 150 hg~--~~~~~~t~ivCK~FleAvE~~kYGWfW~CPnGGd~C~YrH~LPpG~VL 200 (363)
||. .....+.--||.|||. ..|.. .+|+-.|-|-.--+|
T Consensus 163 ~g~C~~~~~C~kLHIC~~Fl~----------G~C~f--~~CkRsH~~~~~~~l 203 (229)
T 3u9g_A 163 KQTCGQPQPCERLHICEHFTR----------GNCSY--LNCLRSHNLMDRKVL 203 (229)
T ss_dssp CCSCSSSSCCCSBCSCHHHHT----------TCCCC--SSCSSCCCTTSHHHH
T ss_pred CCcCCCCCCCcceeccchhhc----------CCcCC--CCccCccCccCchHH
Confidence 121 1122345678999988 57877 388888887543333
No 11
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=96.24 E-value=0.0013 Score=53.67 Aligned_cols=27 Identities=33% Similarity=0.812 Sum_probs=24.0
Q ss_pred chhhhhh-hcccccCCCCCccCcccchh
Q 017965 90 SILCEFF-KAGQCQKGFKCKFSHDLNIQ 116 (363)
Q Consensus 90 sv~C~fF-k~G~C~KG~kCKFSHDl~~~ 116 (363)
+++|.|| ..|.|..|..|+|+|+....
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~~~ 63 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPLTE 63 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCCCH
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCCcc
Confidence 6889999 69999999999999997643
No 12
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.91 E-value=0.0033 Score=48.86 Aligned_cols=30 Identities=27% Similarity=0.692 Sum_probs=25.3
Q ss_pred CCChhhhhHHHHHHHHhcccCcccccCCCCCcccccccCCC
Q 017965 156 NKPTEIVCKYFLEAVEKKQYGWFWVCPNGGKECHYRHALPP 196 (363)
Q Consensus 156 ~~~t~ivCK~FleAvE~~kYGWfW~CPnGGd~C~YrH~LPp 196 (363)
.....+||+|||. ..|.+| ++|.|.|.+.+
T Consensus 6 ~~~k~~~C~~fl~----------G~C~~G-~~C~fsH~~~~ 35 (77)
T 2d9n_A 6 SGEKTVVCKHWLR----------GLCKKG-DQCEFLHEYDM 35 (77)
T ss_dssp SCCTTSBCHHHHT----------TCCSCT-TSSSSBCSCCT
T ss_pred CCCcceeCHhHcc----------CcCCCC-CCCCCcccccc
Confidence 3456789999997 589999 89999999875
No 13
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.52 E-value=0.0035 Score=47.93 Aligned_cols=26 Identities=27% Similarity=0.662 Sum_probs=23.6
Q ss_pred CCchhhhhhhcccccCCCCCccCcccc
Q 017965 88 PKSILCEFFKAGQCQKGFKCKFSHDLN 114 (363)
Q Consensus 88 pKsv~C~fFk~G~C~KG~kCKFSHDl~ 114 (363)
-++.+|.+|..|.|..| .|+|+|...
T Consensus 40 ~~~~vC~~flkG~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 40 NTVTVCMDYIKGRCSRE-KCKYFHPPA 65 (70)
T ss_dssp TEEEBCHHHHTTCCCCT-TCCSBCCCH
T ss_pred CcceeccccCcCCCCCC-CcCeeCCHH
Confidence 36789999999999999 999999865
No 14
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=95.01 E-value=0.0041 Score=47.41 Aligned_cols=28 Identities=36% Similarity=0.764 Sum_probs=0.0
Q ss_pred CCCchhhh-hhhcccccCCCCCccCcccc
Q 017965 87 DPKSILCE-FFKAGQCQKGFKCKFSHDLN 114 (363)
Q Consensus 87 DpKsv~C~-fFk~G~C~KG~kCKFSHDl~ 114 (363)
..++.+|. |+..|.|..|.+|+|.|...
T Consensus 47 ~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 47 KYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp -----------------------------
T ss_pred cccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 35678997 55699999999999999864
No 15
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=94.55 E-value=0.011 Score=45.68 Aligned_cols=26 Identities=31% Similarity=0.602 Sum_probs=23.4
Q ss_pred Cchhhhhhhc-ccccCCCCCccCcccch
Q 017965 89 KSILCEFFKA-GQCQKGFKCKFSHDLNI 115 (363)
Q Consensus 89 Ksv~C~fFk~-G~C~KG~kCKFSHDl~~ 115 (363)
++.+|.||.. |.|.. ..|+|+|....
T Consensus 43 ~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 43 KMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 5679999999 99999 99999998764
No 16
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.44 E-value=0.018 Score=44.97 Aligned_cols=27 Identities=30% Similarity=0.693 Sum_probs=24.8
Q ss_pred CchhhhhhhcccccCCCCCccCcccch
Q 017965 89 KSILCEFFKAGQCQKGFKCKFSHDLNI 115 (363)
Q Consensus 89 Ksv~C~fFk~G~C~KG~kCKFSHDl~~ 115 (363)
+.-||..|..|.|.-|++|.|.|-..-
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~~E 45 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGNAE 45 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSHHH
T ss_pred CcccCcccCcCCCCCCCccCCcCCHHH
Confidence 779999999999999999999998754
No 17
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.25 E-value=0.014 Score=47.72 Aligned_cols=28 Identities=29% Similarity=0.630 Sum_probs=24.9
Q ss_pred CCCchhhhhhhcccccCCCCCccCcccch
Q 017965 87 DPKSILCEFFKAGQCQKGFKCKFSHDLNI 115 (363)
Q Consensus 87 DpKsv~C~fFk~G~C~KG~kCKFSHDl~~ 115 (363)
+-+..+|.||..|.|..| .|+|+|...-
T Consensus 53 ~~~~~vC~~flkG~C~r~-~C~y~H~~~~ 80 (98)
T 2e5s_A 53 DNTVTVCMDYIKGRCMRE-KCKYFHPPAH 80 (98)
T ss_dssp TCEEEBCHHHHHTCCCCT-TCCSBCCCHH
T ss_pred CCccccchhhccCCCCCC-CcCccCChHH
Confidence 457889999999999999 9999998753
No 18
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.26 E-value=0.022 Score=53.05 Aligned_cols=27 Identities=30% Similarity=0.770 Sum_probs=23.6
Q ss_pred hhhhhHHHHHHHHhcccCcccccCCCCCcccccccCCC
Q 017965 159 TEIVCKYFLEAVEKKQYGWFWVCPNGGKECHYRHALPP 196 (363)
Q Consensus 159 t~ivCK~FleAvE~~kYGWfW~CPnGGd~C~YrH~LPp 196 (363)
...+|-||.- ..|+.| +.|.|+|-||.
T Consensus 69 ~~~~C~ffak----------G~C~~G-~~C~y~H~lPt 95 (240)
T 3u1l_A 69 QLFFCLFFAK----------GMCCLG-PKCEYLHHIPD 95 (240)
T ss_dssp CCSBCHHHHT----------TCCSCG-GGCSSBBSCCC
T ss_pred CCeEcCcccc----------CCCCCC-CCCCccCCCCC
Confidence 4569999965 699998 99999999996
No 19
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=93.00 E-value=0.027 Score=44.82 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=23.6
Q ss_pred CchhhhhhhcccccCCCCCccCcccch
Q 017965 89 KSILCEFFKAGQCQKGFKCKFSHDLNI 115 (363)
Q Consensus 89 Ksv~C~fFk~G~C~KG~kCKFSHDl~~ 115 (363)
+..+|.+|..|.|..| .|+|+|.+..
T Consensus 42 ~~~vC~dflkG~C~r~-~C~y~H~~~~ 67 (83)
T 3d2n_A 42 RVIACFDSLKGRCSRE-NCKYLHPPPH 67 (83)
T ss_dssp EEECCHHHHTTCCCCS-SCSSCCCCHH
T ss_pred ceeehhHhhhccccCC-CcceeCChHH
Confidence 4689999999999999 9999999874
No 20
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=91.97 E-value=0.045 Score=40.38 Aligned_cols=27 Identities=37% Similarity=1.050 Sum_probs=22.4
Q ss_pred ChhhhhHHHHHHHHhcccCcccccCCCCCcccccccC
Q 017965 158 PTEIVCKYFLEAVEKKQYGWFWVCPNGGKECHYRHAL 194 (363)
Q Consensus 158 ~t~ivCK~FleAvE~~kYGWfW~CPnGGd~C~YrH~L 194 (363)
.+.-||.-|-. ||| |||| ..|.++|-+
T Consensus 18 ~~~~iC~~FSa------yGw---Cp~G-~~Cp~SHDi 44 (50)
T 2fc6_A 18 HPTSICDNFSA------YGW---CPLG-PQCPQSHDI 44 (50)
T ss_dssp CCSCBCSHHHH------TCC---CTTG-GGCSSBCCC
T ss_pred cccchhhhccc------ccc---CCCC-CCCCccccC
Confidence 46679999955 885 9998 999999964
No 21
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=89.82 E-value=0.082 Score=49.24 Aligned_cols=28 Identities=32% Similarity=0.758 Sum_probs=24.7
Q ss_pred chhhhhhhcccccCCCCCccCcccchhh
Q 017965 90 SILCEFFKAGQCQKGFKCKFSHDLNIQR 117 (363)
Q Consensus 90 sv~C~fFk~G~C~KG~kCKFSHDl~~~r 117 (363)
..+|.||-.|.|..|..|.|.|.+...-
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~lPt~~ 97 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHIPDEE 97 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSCCCHH
T ss_pred CeEcCccccCCCCCCCCCCccCCCCCcc
Confidence 4699999999999999999999977643
No 22
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=88.48 E-value=0.13 Score=37.84 Aligned_cols=28 Identities=32% Similarity=0.650 Sum_probs=23.7
Q ss_pred CCchhhhhhh-cccccCCCCCccCcccch
Q 017965 88 PKSILCEFFK-AGQCQKGFKCKFSHDLNI 115 (363)
Q Consensus 88 pKsv~C~fFk-~G~C~KG~kCKFSHDl~~ 115 (363)
.++-+|.-|- .|.|..|..|.||||+++
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCC
Confidence 3677887765 689999999999999876
No 23
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=88.19 E-value=0.087 Score=42.02 Aligned_cols=27 Identities=37% Similarity=0.876 Sum_probs=20.9
Q ss_pred hhhhHHHHHHHHhcccCcccccCCCCCcccccccCCCcccchh
Q 017965 160 EIVCKYFLEAVEKKQYGWFWVCPNGGKECHYRHALPPGYILKS 202 (363)
Q Consensus 160 ~ivCK~FleAvE~~kYGWfW~CPnGGd~C~YrH~LPpG~VLK~ 202 (363)
...|+|+. .|-| ..|.|+| |.|-||-+
T Consensus 52 ~~~Crf~~------------~C~n--~~C~F~H--p~g~~~~~ 78 (80)
T 2lhn_A 52 NEDCRFGV------------NCKN--IYCLFRH--PPGRVLPE 78 (80)
Confidence 45688874 6888 5899999 88888754
No 24
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=88.19 E-value=0.14 Score=41.31 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=23.7
Q ss_pred CchhhhhhhcccccCCCCCccCcccch
Q 017965 89 KSILCEFFKAGQCQKGFKCKFSHDLNI 115 (363)
Q Consensus 89 Ksv~C~fFk~G~C~KG~kCKFSHDl~~ 115 (363)
+..+|.+|..|.|..+ .|+|+|.+..
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~~~h 75 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHPPTH 75 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCCCHH
T ss_pred ceeeehhhhhCcCCCC-CcceecCHHH
Confidence 5789999999999998 8999999874
No 25
>1lup_A GSMTX2; inhibitor cysteine knot, beta-sheet, toxin; NMR {Grammostola rosea} SCOP: g.3.6.2 PDB: 1v7f_A
Probab=84.23 E-value=0.43 Score=31.98 Aligned_cols=19 Identities=26% Similarity=1.158 Sum_probs=14.9
Q ss_pred CcccccCCCCCcccccccCCCcccch
Q 017965 176 GWFWVCPNGGKECHYRHALPPGYILK 201 (363)
Q Consensus 176 GWfW~CPnGGd~C~YrH~LPpG~VLK 201 (363)
||||.|-.+ ++| | +|||-+
T Consensus 4 ~~f~~Cd~~-~kC----C--eg~vC~ 22 (31)
T 1lup_A 4 KWMWTCDEE-RKC----C--EGLVCR 22 (31)
T ss_dssp SSSCBCCSS-CCC----C--SSSBCS
T ss_pred cccccCCch-hhh----c--ccchHH
Confidence 899999887 877 3 777743
No 26
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.47 E-value=0.58 Score=36.45 Aligned_cols=23 Identities=30% Similarity=1.080 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHhcccCcccccCCCCCcccccccC
Q 017965 161 IVCKYFLEAVEKKQYGWFWVCPNGGKECHYRHAL 194 (363)
Q Consensus 161 ivCK~FleAvE~~kYGWfW~CPnGGd~C~YrH~L 194 (363)
-+|++|+. | .||.| +.|.|-|-.
T Consensus 21 ~LC~~~~~-------G---~C~~G-~~C~FAHG~ 43 (69)
T 2d9m_A 21 SICDRYMN-------G---TCPEG-NSCKFAHGN 43 (69)
T ss_dssp SBCHHHHH-------S---CCSSC-SSCSSBSSH
T ss_pred ccCcccCc-------C---CCCCC-CccCCcCCH
Confidence 89999954 3 89998 999999953
No 27
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=61.90 E-value=2.7 Score=39.36 Aligned_cols=27 Identities=33% Similarity=0.722 Sum_probs=22.8
Q ss_pred CchhhhhhhcccccCCCCCccCcccchh
Q 017965 89 KSILCEFFKAGQCQKGFKCKFSHDLNIQ 116 (363)
Q Consensus 89 Ksv~C~fFk~G~C~KG~kCKFSHDl~~~ 116 (363)
+-=+|.+|.+|.|.- ..||-||++...
T Consensus 174 kLHIC~~Fl~G~C~f-~~CkRsH~~~~~ 200 (229)
T 3u9g_A 174 RLHICEHFTRGNCSY-LNCLRSHNLMDR 200 (229)
T ss_dssp SBCSCHHHHTTCCCC-SSCSSCCCTTSH
T ss_pred ceeccchhhcCCcCC-CCccCccCccCc
Confidence 345899999999998 799999999653
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=60.96 E-value=2 Score=40.01 Aligned_cols=30 Identities=27% Similarity=0.720 Sum_probs=0.8
Q ss_pred CCCCCCCCchhhhhhhcccccCCCCCccCccc
Q 017965 82 VPVGVDPKSILCEFFKAGQCQKGFKCKFSHDL 113 (363)
Q Consensus 82 vp~gvDpKsv~C~fFk~G~C~KG~kCKFSHDl 113 (363)
-|.-.+++..+|-|-| .|+=|.+|||-|--
T Consensus 184 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 213 (223)
T 3v33_A 184 KPLTLEHRKQPCPYGR--KCTYGIKCRFFHPE 213 (223)
T ss_dssp CC------------------------------
T ss_pred CCCCcccCCCCCCCCc--ccccCCcceecCCc
Confidence 3444577889999955 89999999999964
No 29
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=40.61 E-value=10 Score=36.66 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.0
Q ss_pred CCcCHHHHHHhHHHHHHHH
Q 017965 232 TPMTTELFMQWKKKKMEER 250 (363)
Q Consensus 232 TPVT~EsF~~WKkkk~~Ek 250 (363)
-.+|+|.|..|++-+..|.
T Consensus 260 A~~s~eey~~F~k~~~~e~ 278 (335)
T 4fp9_B 260 ACTSVEEFQVFKKLLAREE 278 (335)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhhh
Confidence 4589999999988776554
No 30
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=37.07 E-value=7.1 Score=36.14 Aligned_cols=10 Identities=40% Similarity=0.561 Sum_probs=0.0
Q ss_pred HHHhhhhccc
Q 017965 342 ELEASLSRTS 351 (363)
Q Consensus 342 e~e~~~~~~~ 351 (363)
++.+.++++.
T Consensus 376 ~~~~~~~~~~ 385 (386)
T 2ca6_A 376 ELADELSKAH 385 (386)
T ss_dssp ----------
T ss_pred HHHHHHhcCc
Confidence 4444555554
No 31
>2h9x_A Toxin CGNA; beta sheet; HET: HYP; NMR {Condylactis gigantea}
Probab=34.50 E-value=16 Score=26.54 Aligned_cols=19 Identities=21% Similarity=0.592 Sum_probs=15.1
Q ss_pred CcccccCCCCCcccccccC
Q 017965 176 GWFWVCPNGGKECHYRHAL 194 (363)
Q Consensus 176 GWfW~CPnGGd~C~YrH~L 194 (363)
-|||.||.|=.+|.-++.+
T Consensus 22 vw~~~C~sGW~kC~~~~~~ 40 (47)
T 2h9x_A 22 VWVGSCASGWHKCNDEYNI 40 (47)
T ss_dssp EESSSCCTTCBCSSSCCCS
T ss_pred EEecCCcchhhhhcccCcc
Confidence 3999999998899766543
No 32
>1sh1_A Neurotoxin I; NMR {Stichodactyla helianthus} SCOP: g.9.1.1 PDB: 2sh1_A 1shi_A
Probab=28.34 E-value=11 Score=27.55 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=14.8
Q ss_pred CcccccCCCCCccccccc
Q 017965 176 GWFWVCPNGGKECHYRHA 193 (363)
Q Consensus 176 GWfW~CPnGGd~C~YrH~ 193 (363)
-|||.||.|=.+|.-+|.
T Consensus 21 vw~~~CpsGW~kC~~~~~ 38 (48)
T 1sh1_A 21 VDLGSCNAGWEKCASYYT 38 (48)
T ss_dssp EEESSCCTTEEEEEEEEE
T ss_pred EeecCCcchhhhhcccCc
Confidence 399999999888976655
No 33
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=26.21 E-value=16 Score=30.89 Aligned_cols=12 Identities=25% Similarity=0.374 Sum_probs=8.7
Q ss_pred ccCCCcHHHHHH
Q 017965 212 SDRLPIEDEIED 223 (363)
Q Consensus 212 ~~eisLEE~IE~ 223 (363)
..+||++++.+.
T Consensus 101 ~~~i~~~~~~~~ 112 (117)
T 1dj7_A 101 AQDIPMETLEEV 112 (117)
T ss_dssp CSCCCHHHHHHH
T ss_pred cccccHHHHHHH
Confidence 357999987653
No 34
>4g7w_A Putative uncharacterized protein; beta barrel, TOLA binding domain, selenomethionine-substitut protein, phage coat, protein binding; 2.90A {Vibrio cholerae}
Probab=25.70 E-value=11 Score=32.34 Aligned_cols=19 Identities=47% Similarity=1.263 Sum_probs=16.0
Q ss_pred HHhcccCcccccC---CCCCccc
Q 017965 170 VEKKQYGWFWVCP---NGGKECH 189 (363)
Q Consensus 170 vE~~kYGWfW~CP---nGGd~C~ 189 (363)
||+.-||+.|.|- || |.|+
T Consensus 62 iekddygfvwsclsneng-dyck 83 (160)
T 4g7w_A 62 IEKDDYGFVWSCLSNENG-DYCK 83 (160)
T ss_dssp ECBCSSSBSEEEEECSSC-EEEE
T ss_pred eeccccceEEeeeccCCc-chhc
Confidence 6889999999995 44 8886
No 35
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=24.28 E-value=6.7 Score=34.35 Aligned_cols=20 Identities=5% Similarity=-0.390 Sum_probs=6.1
Q ss_pred CCCCcch-hhhhcCCCcccCc
Q 017965 264 NDRMSGR-ELFLSNASLFVDD 283 (363)
Q Consensus 264 k~~LSGR-ELFe~dp~Lf~DD 283 (363)
...|+|+ +.|.+++++..++
T Consensus 71 ei~~~g~~~~~~f~~d~~~~d 91 (142)
T 4a9a_C 71 EIILKMSAENKSFETDNADMP 91 (142)
T ss_dssp HHHHHHHHC------------
T ss_pred HHHHhcccccccccccccccc
Confidence 3668998 8999998887543
No 36
>1atx_A ATX IA; SEA anemone toxin; NMR {Anemonia sulcata} SCOP: g.9.1.1
Probab=24.00 E-value=19 Score=26.07 Aligned_cols=16 Identities=38% Similarity=0.978 Sum_probs=13.3
Q ss_pred CcccccCCCCCccccc
Q 017965 176 GWFWVCPNGGKECHYR 191 (363)
Q Consensus 176 GWfW~CPnGGd~C~Yr 191 (363)
-|||.||.|=.+|.-+
T Consensus 22 vw~~~CpsGW~kC~~~ 37 (46)
T 1atx_A 22 IWVFGCPSGWNNCEGR 37 (46)
T ss_dssp EESSCCCTTCEEECCS
T ss_pred EEecCCcchhhhccCc
Confidence 3999999998888755
No 37
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=22.50 E-value=33 Score=30.02 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=17.7
Q ss_pred HHHHHHHhcccC---cccccCCCCCccccccc
Q 017965 165 YFLEAVEKKQYG---WFWVCPNGGKECHYRHA 193 (363)
Q Consensus 165 ~FleAvE~~kYG---WfW~CPnGGd~C~YrH~ 193 (363)
-.|+.|++|+.- =+|+||+ |-|.|-
T Consensus 122 ~~l~~l~~~~~~~~~~~~~C~~----CG~i~~ 149 (170)
T 3pwf_A 122 KAKEKAEKGEDIEIKKVYICPI----CGYTAV 149 (170)
T ss_dssp HHHHHHTTTCCCCCSCEEECTT----TCCEEE
T ss_pred HHHHHHhcCCcCCCCCeeEeCC----CCCeeC
Confidence 357778877652 3799998 777764
No 38
>4g7x_A Putative uncharacterized protein; membrane, protein binding-protein binding complex; 1.44A {Vibrio cholerae}
Probab=22.39 E-value=8.3 Score=31.18 Aligned_cols=19 Identities=47% Similarity=1.263 Sum_probs=16.1
Q ss_pred HHhcccCcccccC---CCCCccc
Q 017965 170 VEKKQYGWFWVCP---NGGKECH 189 (363)
Q Consensus 170 vE~~kYGWfW~CP---nGGd~C~ 189 (363)
||+.-||+.|.|- || +.|+
T Consensus 45 iekddygfvwsclsneng-dyck 66 (105)
T 4g7x_A 45 IEKDDYGFVWSCLSNENG-DYCK 66 (105)
T ss_dssp ECEETTEESEEEEEETTE-EEEE
T ss_pred eeccccceEEEeeccCCc-chhc
Confidence 6889999999995 55 8887
Done!