BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017966
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 306 bits (785), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 160/361 (44%), Positives = 228/361 (63%), Gaps = 7/361 (1%)
Query: 1 MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQ--EYY 58
L +RGK GLV +NL L V ++K RLG E +G G + F++EPFVPH+Q E+Y
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 59 LSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTL-DACAPLIATLPLEFRGK 117
+ I + R G + F GG+++ + K + + + ++ + D L+ P + +
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 118 IGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPL 177
+ FI G+F ++DL F+++E+NP + Y LD+ ++D TA + KW +IEFP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
Query: 178 PFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 237
PFGR E++I LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 238 LGNYAEYSGAPNEEEVLQYARVVIDCATAD--PDGRKRALLIGGGIANFTDVATTFNGII 295
L NY EYSGAP+E++ YA+ ++ T + PDG + L+IGG IANFT+VA TF GI+
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIV 358
Query: 296 RALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQA 355
RA+R+ + LK + IFVRRGGPNYQ GL M +G+ GIP+ V+G E MT I A
Sbjct: 359 RAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMA 418
Query: 356 I 356
+
Sbjct: 419 L 419
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 425
Score = 306 bits (783), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 160/361 (44%), Positives = 228/361 (63%), Gaps = 7/361 (1%)
Query: 1 MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQ--EYY 58
L +RGK GLV +NL L V ++K RLG E +G G + F++EPFVPH+Q E+Y
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 59 LSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTL-DACAPLIATLPLEFRGK 117
+ I + R G + F GG+++ + K + + + ++ + D L+ P + +
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 118 IGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPL 177
+ FI G+F ++DL F+++E+NP + Y LD+ ++D TA + KW +IEFP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
Query: 178 PFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 237
PFGR E++I LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 238 LGNYAEYSGAPNEEEVLQYARVVIDCATAD--PDGRKRALLIGGGIANFTDVATTFNGII 295
L NY EYSGAP+E++ YA+ ++ T + PDG + L+IGG IANFT+VA TF GI+
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIV 358
Query: 296 RALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQA 355
RA+R+ + LK + IFVRRGGPNYQ GL M +G+ GIP+ V+G E MT I A
Sbjct: 359 RAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMA 418
Query: 356 I 356
+
Sbjct: 419 L 419
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 425
Score = 299 bits (765), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 157/361 (43%), Positives = 225/361 (62%), Gaps = 7/361 (1%)
Query: 1 MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQ--EYY 58
L +RGK GLV +NL L V ++K RLG E +G G + F++EPFVPH+Q E+Y
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 59 LSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTL-DACAPLIATLPLEFRGK 117
+ I + R G + F GG+++ + K + + + ++ + D L+ P + +
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 118 IGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPL 177
+ FI G+F ++DL F+++E+NP + Y LD+ ++D TA + KW +IEFP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
Query: 178 PFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 237
PFGR E++I LD K+ ASLK T+LNPKGRIWT VAGGGASV+Y+DT+ DLG +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTXVAGGGASVVYSDTICDLGGVNE 300
Query: 238 LGNYAEYSGAPNEEEVLQYARVVIDCATAD--PDGRKRALLIGGGIANFTDVATTFNGII 295
L NY EYSGAP+E++ YA+ ++ T + PDG+ L+IGG IANFT+VA TF GI+
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLXTREKHPDGK--ILIIGGSIANFTNVAATFKGIV 358
Query: 296 RALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQA 355
RA+R+ + LK + IFVRRGGPNYQ GL +G+ GIP+ V+G E T I A
Sbjct: 359 RAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVXGEVGKTTGIPIHVFGTETHXTAIVGXA 418
Query: 356 I 356
+
Sbjct: 419 L 419
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|E Chain E, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|B Chain B, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|E Chain E, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 385
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 126/318 (39%), Gaps = 52/318 (16%)
Query: 4 GKRGKSGLVALNLDLAQVAEFVKGRLGTEV---EMGGCKGPITTFIVEPFVPHNQEYYLS 60
G RGK+G V + + F + LG + + P+ +VE +E YL
Sbjct: 52 GGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLG 111
Query: 61 IVSDRLGCTISF--SECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFR--- 115
V DR + F S GG+EIE+ ++ + + LD PL +P + R
Sbjct: 112 AVVDRSSRRVVFMASTEGGVEIEKVAEETPHLI----HKVALD---PLTGPMPYQGRELA 164
Query: 116 ------GKI----GDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAF 164
GK+ MG+ +F + D + IE+NP + G+ LD + D A F
Sbjct: 165 FKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALF 224
Query: 165 KNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVI 224
+ P R + E +A + + G I MV G G ++
Sbjct: 225 RQ-----------PDLREMRDQSQ--EDPREAQAAQWELNYVALDGNIGCMVNGAGLAMG 271
Query: 225 YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG--GGIA 282
D V G E N+ + G +E V + ++++ D + +A+L+ GGI
Sbjct: 272 TMDIVKLHG--GEPANFLDVGGGATKERVTEAFKIILS------DDKVKAVLVNIFGGIV 323
Query: 283 NFTDVATTFNGIIRALRE 300
+A +GII A+ E
Sbjct: 324 RCDLIA---DGIIGAVAE 338
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|E Chain E, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|2SCU|B Chain B, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|E Chain E, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1JKJ|B Chain B, E. Coli Scs
pdb|1JKJ|E Chain E, E. Coli Scs
pdb|2NU6|B Chain B, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|E Chain E, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|B Chain B, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|E Chain E, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU9|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|G Chain G, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|I Chain I, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NUA|B Chain B, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|E Chain E, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 388
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 126/318 (39%), Gaps = 52/318 (16%)
Query: 4 GKRGKSGLVALNLDLAQVAEFVKGRLGTEV---EMGGCKGPITTFIVEPFVPHNQEYYLS 60
G RGK+G V + + F + LG + + P+ +VE +E YL
Sbjct: 52 GGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLG 111
Query: 61 IVSDRLGCTISF--SECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFR--- 115
V DR + F S GG+EIE+ ++ + + LD PL +P + R
Sbjct: 112 AVVDRSSRRVVFMASTEGGVEIEKVAEETPHLI----HKVALD---PLTGPMPYQGRELA 164
Query: 116 ------GKI----GDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAF 164
GK+ MG+ +F + D + IE+NP + G+ LD + D A F
Sbjct: 165 FKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALF 224
Query: 165 KNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVI 224
+ P R + E +A + + G I MV G G ++
Sbjct: 225 RQ-----------PDLREMRDQSQ--EDPREAQAAQWELNYVALDGNIGCMVNGAGLAMG 271
Query: 225 YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG--GGIA 282
D V G E N+ + G +E V + ++++ D + +A+L+ GGI
Sbjct: 272 TMDIVKLHG--GEPANFLDVGGGATKERVTEAFKIILS------DDKVKAVLVNIFGGIV 323
Query: 283 NFTDVATTFNGIIRALRE 300
+A +GII A+ E
Sbjct: 324 RCDLIA---DGIIGAVAE 338
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|E Chain E, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 388
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 125/318 (39%), Gaps = 52/318 (16%)
Query: 4 GKRGKSGLVALNLDLAQVAEFVKGRLGTEV---EMGGCKGPITTFIVEPFVPHNQEYYLS 60
G RGK+G V + + F + LG + + P+ +VE +E YL
Sbjct: 52 GGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLG 111
Query: 61 IVSDRLGCTISF--SECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFR--- 115
V DR + F S GG+EIE+ ++ + + LD PL +P + R
Sbjct: 112 AVVDRSSRRVVFMASTEGGVEIEKVAEETPHLI----HKVALD---PLTGPMPYQGRELA 164
Query: 116 ------GKI----GDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAF 164
GK+ MG+ +F + D + I +NP + G+ LD + D A F
Sbjct: 165 FKLGLEGKLVQQFTKIFMGLATIFLERDLALIAINPLVITKQGDLICLDGKLGADGNALF 224
Query: 165 KNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVI 224
+ P R + E +A + + G I MV G G ++
Sbjct: 225 RQ-----------PDLREMRDQSQ--EDPREAQAAQWELNYVALDGNIGCMVNGAGLAMG 271
Query: 225 YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG--GGIA 282
D V G E N+ + G +E V + ++++ D + +A+L+ GGI
Sbjct: 272 TMDIVKLHG--GEPANFLDVGGGATKERVTEAFKIILS------DDKVKAVLVNIFGGIV 323
Query: 283 NFTDVATTFNGIIRALRE 300
+A +GII A+ E
Sbjct: 324 RCDLIA---DGIIGAVAE 338
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 396
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 134/334 (40%), Gaps = 61/334 (18%)
Query: 1 MLFGKRGK----SGL---VALNLDLAQVAEFVKGRLG-----TEVEMGGCKGPITTFIVE 48
+L G RGK SGL V L D V + K +G + G K + +V
Sbjct: 50 ILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVK--VNKVMVA 107
Query: 49 PFVPHNQEYYLSIVSDRL--GCTISFSECGGIEIEE------------NWDKVKTIFLPT 94
+ ++E YL+I+ DR G + S GG++IEE D ++ I
Sbjct: 108 EALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQ 167
Query: 95 EKHM--TLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPF-TLVNGEPYP 151
+ M L PL + + D I ++ +F +D + +E+NPF G+
Sbjct: 168 AQRMAENLGFLGPL--------QNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVC 219
Query: 152 LDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGR 211
D + DD A F+ +A + S I +E LK+ L+ G
Sbjct: 220 FDAKINFDDNAEFRQKDIFAMDD---------KSENEPIE--NEAAKYDLKYIGLD--GN 266
Query: 212 IWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGR 271
I V G G ++ D + + N+ + G E +V Q +++ TADP
Sbjct: 267 IACFVNGAGLAMATCDII--FLNGGKPANFLDLGGGVKESQVYQAFKLL----TADPKVE 320
Query: 272 KRALLIGGGIANFTDVATTFNGIIRALREKESKL 305
+ I GGI N +A NGI +A RE E K+
Sbjct: 321 AILVNIFGGIVNXAIIA---NGITKACRELELKV 351
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPG|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
pdb|2FPI|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 395
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 134/334 (40%), Gaps = 61/334 (18%)
Query: 1 MLFGKRGK----SGL---VALNLDLAQVAEFVKGRLG-----TEVEMGGCKGPITTFIVE 48
+L G RGK SGL V L D V + K +G + G K + +V
Sbjct: 49 ILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVK--VNKVMVA 106
Query: 49 PFVPHNQEYYLSIVSDRL--GCTISFSECGGIEIEE------------NWDKVKTIFLPT 94
+ ++E YL+I+ DR G + S GG++IEE D ++ I
Sbjct: 107 EALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQ 166
Query: 95 EKHM--TLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPF-TLVNGEPYP 151
+ M L PL + + D I ++ +F +D + +E+NPF G+
Sbjct: 167 AQRMAENLGFLGPL--------QNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVC 218
Query: 152 LDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGR 211
D + DD A F+ +A + S I +E LK+ L+ G
Sbjct: 219 FDAKINFDDNAEFRQKDIFAMDD---------KSENEPIE--NEAAKYDLKYIGLD--GN 265
Query: 212 IWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGR 271
I V G G ++ D + + N+ + G E +V Q +++ TADP
Sbjct: 266 IACFVNGAGLAMATCDII--FLNGGKPANFLDLGGGVKESQVYQAFKLL----TADPKVE 319
Query: 272 KRALLIGGGIANFTDVATTFNGIIRALREKESKL 305
+ I GGI N +A NGI +A RE E K+
Sbjct: 320 AILVNIFGGIVNCAIIA---NGITKACRELELKV 350
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 396
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 134/334 (40%), Gaps = 61/334 (18%)
Query: 1 MLFGKRGK----SGL---VALNLDLAQVAEFVKGRLG-----TEVEMGGCKGPITTFIVE 48
+L G RGK SGL V L D V + K +G + G K + +V
Sbjct: 50 ILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVK--VNKVMVA 107
Query: 49 PFVPHNQEYYLSIVSDRL--GCTISFSECGGIEIEE------------NWDKVKTIFLPT 94
+ ++E YL+I+ DR G + S GG++IEE D ++ I
Sbjct: 108 EALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQ 167
Query: 95 EKHM--TLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPF-TLVNGEPYP 151
+ M L PL + + D I ++ +F +D + +E+NPF G+
Sbjct: 168 AQRMAENLGFLGPL--------QNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVC 219
Query: 152 LDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGR 211
D + DD A F+ +A + S I +E LK+ L+ G
Sbjct: 220 FDAKINFDDNAEFRQKDIFAMDD---------KSENEPIE--NEAAKYDLKYIGLD--GN 266
Query: 212 IWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGR 271
I V G G ++ D + + N+ + G E +V Q +++ TADP
Sbjct: 267 IACFVNGAGLAMATCDII--FLNGGKPANFLDLGGGVKESQVYQAFKLL----TADPKVE 320
Query: 272 KRALLIGGGIANFTDVATTFNGIIRALREKESKL 305
+ I GGI N +A NGI +A RE E K+
Sbjct: 321 AILVNIFGGIVNXAIIA---NGITKAXRELELKV 351
>pdb|2V8A|B Chain B, The Structure Of Thermosynechococcus Elongatus
Allophycocyanin At 3.5 Angstroems.
pdb|3DBJ|B Chain B, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|D Chain D, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|F Chain F, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|H Chain H, Allophycocyanin From Thermosynechococcus Vulcanus
Length = 161
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 153 DMRGELDDTAAFKNFKKW-ANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFT-VLNPKG 210
D++G+ DTAA + K + A E + V+S+ + I + E + SL ++ + P G
Sbjct: 13 DVQGKYLDTAAMEKLKAYFATGELRVRAASVISANAANI--VKEAVAKSLLYSDITRPGG 70
Query: 211 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN--EEEVLQ 255
++T + YA + DL Y YA +G P+ +E VL
Sbjct: 71 XMYT-------TRRYAACIRDLDYYLRYATYAMLAGDPSILDERVLN 110
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 376
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 249 NEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 282
NE+ L+Y V+ID P KR L++G GIA
Sbjct: 22 NEDLKLRYLDVLIDNGLNPPGPPKRILIVGAGIA 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,037,542
Number of Sequences: 62578
Number of extensions: 473299
Number of successful extensions: 1083
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 13
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)