Query 017966
Match_columns 363
No_of_seqs 188 out of 1444
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 07:46:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwd_A ATP-citrate synthase; A 100.0 9.3E-88 3.2E-92 673.4 28.0 354 1-357 61-420 (425)
2 3pff_A ATP-citrate synthase; p 100.0 2.2E-84 7.5E-89 690.0 28.8 356 1-359 61-422 (829)
3 2fp4_B Succinyl-COA ligase [GD 100.0 2.6E-74 8.8E-79 573.5 36.0 327 1-361 49-394 (395)
4 2nu8_B SCS-beta, succinyl-COA 100.0 3E-73 1E-77 565.0 35.3 326 2-361 50-387 (388)
5 3ufx_B Succinyl-COA synthetase 100.0 2.8E-71 9.6E-76 552.2 27.8 320 2-362 49-377 (397)
6 1wr2_A Hypothetical protein PH 99.9 1.7E-24 5.9E-29 200.7 10.3 152 3-161 68-237 (238)
7 2csu_A 457AA long hypothetical 99.9 1.3E-21 4.5E-26 198.0 14.8 159 160-360 261-446 (457)
8 3dmy_A Protein FDRA; predicted 99.3 7.6E-12 2.6E-16 126.7 12.5 129 208-361 248-414 (480)
9 3mwd_B ATP-citrate synthase; A 97.2 0.0014 4.9E-08 63.2 10.3 95 208-322 167-264 (334)
10 3dmy_A Protein FDRA; predicted 97.0 0.0027 9.3E-08 64.1 10.6 121 208-360 111-236 (480)
11 2fp4_A Succinyl-COA ligase [GD 96.9 0.0024 8.2E-08 60.8 8.6 128 208-357 151-300 (305)
12 1oi7_A Succinyl-COA synthetase 96.9 0.0054 1.8E-07 57.9 10.7 126 208-358 143-286 (288)
13 2yv2_A Succinyl-COA synthetase 96.7 0.0049 1.7E-07 58.4 9.2 94 209-321 151-246 (297)
14 2yv1_A Succinyl-COA ligase [AD 96.7 0.0047 1.6E-07 58.4 8.7 93 208-321 149-243 (294)
15 2nu8_A Succinyl-COA ligase [AD 96.4 0.0097 3.3E-07 56.0 8.7 94 208-321 143-238 (288)
16 3pff_A ATP-citrate synthase; p 95.7 0.043 1.5E-06 58.8 10.7 96 208-322 653-750 (829)
17 2csu_A 457AA long hypothetical 95.1 0.076 2.6E-06 53.1 9.8 93 210-322 150-242 (457)
18 3glk_A Acetyl-COA carboxylase 94.4 0.14 4.9E-06 52.2 9.8 55 11-73 243-297 (540)
19 3jrx_A Acetyl-COA carboxylase 94.4 0.2 6.7E-06 51.8 10.7 55 11-73 259-313 (587)
20 4e4t_A Phosphoribosylaminoimid 93.8 0.19 6.5E-06 49.5 9.0 51 11-73 187-237 (419)
21 4eg0_A D-alanine--D-alanine li 93.1 0.86 3E-05 42.5 11.9 53 11-73 161-213 (317)
22 3ouz_A Biotin carboxylase; str 92.3 0.54 1.8E-05 46.2 9.8 60 10-73 170-229 (446)
23 3k5i_A Phosphoribosyl-aminoimi 91.2 0.61 2.1E-05 45.4 8.7 45 11-67 176-220 (403)
24 1w96_A ACC, acetyl-coenzyme A 90.2 1.8 6.1E-05 44.0 11.4 54 11-72 249-302 (554)
25 1a9x_A Carbamoyl phosphate syn 89.8 1.6 5.6E-05 48.0 11.4 55 11-73 178-232 (1073)
26 3e5n_A D-alanine-D-alanine lig 89.3 3.2 0.00011 40.1 11.9 50 10-70 212-261 (386)
27 2cqy_A Propionyl-COA carboxyla 88.7 0.17 5.7E-06 39.1 1.8 47 11-61 60-106 (108)
28 3n6r_A Propionyl-COA carboxyla 87.9 0.76 2.6E-05 48.2 6.8 59 11-73 167-225 (681)
29 3ln6_A Glutathione biosynthesi 87.6 0.47 1.6E-05 50.4 5.0 68 3-83 529-604 (750)
30 1kjq_A GART 2, phosphoribosylg 87.3 2.2 7.6E-05 40.6 9.2 51 11-67 163-213 (391)
31 3tqt_A D-alanine--D-alanine li 86.5 6.3 0.00022 37.8 12.0 45 10-65 194-238 (372)
32 3u9t_A MCC alpha, methylcroton 85.9 0.93 3.2E-05 47.5 6.0 59 11-73 193-251 (675)
33 1ehi_A LMDDL2, D-alanine:D-lac 85.8 5.8 0.0002 37.9 11.3 46 11-66 189-234 (377)
34 3i12_A D-alanine-D-alanine lig 85.3 14 0.00048 35.0 13.8 46 10-66 193-238 (364)
35 3k3p_A D-alanine--D-alanine li 85.2 2.4 8.3E-05 41.0 8.3 45 10-65 215-259 (383)
36 3se7_A VANA; alpha-beta struct 85.1 11 0.00037 35.4 12.8 45 11-66 180-224 (346)
37 2yxb_A Coenzyme B12-dependent 85.1 4.4 0.00015 34.2 9.0 111 220-360 34-144 (161)
38 2dwc_A PH0318, 433AA long hypo 84.0 3 0.0001 40.5 8.5 52 11-68 171-224 (433)
39 3va7_A KLLA0E08119P; carboxyla 83.4 2 7E-05 48.1 7.6 59 11-73 195-253 (1236)
40 2qf7_A Pyruvate carboxylase pr 82.7 1.9 6.4E-05 48.1 7.0 58 11-72 186-243 (1165)
41 1a9x_A Carbamoyl phosphate syn 82.2 7.3 0.00025 42.9 11.5 49 11-67 724-772 (1073)
42 3q2o_A Phosphoribosylaminoimid 82.0 17 0.00058 34.6 12.8 50 10-71 162-211 (389)
43 3r5x_A D-alanine--D-alanine li 80.7 6.9 0.00024 35.7 9.2 48 11-69 148-195 (307)
44 3hbl_A Pyruvate carboxylase; T 80.4 2.1 7.2E-05 47.6 6.4 59 11-73 170-228 (1150)
45 2ehh_A DHDPS, dihydrodipicolin 78.7 19 0.00063 33.4 11.5 110 239-362 10-125 (294)
46 2yxg_A DHDPS, dihydrodipicolin 77.5 19 0.00064 33.2 11.1 110 239-362 10-125 (289)
47 3l21_A DHDPS, dihydrodipicolin 77.5 21 0.0007 33.3 11.5 111 239-362 24-140 (304)
48 3qfe_A Putative dihydrodipicol 77.4 17 0.00057 34.2 10.8 113 239-362 19-138 (318)
49 3aw8_A PURK, phosphoribosylami 77.2 3 0.0001 39.5 5.7 52 10-73 146-197 (369)
50 2z04_A Phosphoribosylaminoimid 75.0 2 6.9E-05 40.6 3.8 51 11-72 142-192 (365)
51 3flu_A DHDPS, dihydrodipicolin 74.7 28 0.00097 32.2 11.6 111 239-362 16-132 (297)
52 3tak_A DHDPS, dihydrodipicolin 73.7 25 0.00084 32.5 10.8 110 240-362 11-126 (291)
53 3qze_A DHDPS, dihydrodipicolin 73.6 25 0.00085 32.9 11.0 111 239-362 32-148 (314)
54 3zxn_A RSBS, anti-sigma-factor 73.3 22 0.00074 28.3 9.1 103 242-360 16-119 (123)
55 1o5k_A DHDPS, dihydrodipicolin 72.7 25 0.00084 32.8 10.6 110 239-362 22-137 (306)
56 1ccw_A Protein (glutamate muta 72.5 20 0.00069 29.1 8.9 110 220-359 19-134 (137)
57 3si9_A DHDPS, dihydrodipicolin 72.4 26 0.00087 32.9 10.7 111 239-362 31-147 (315)
58 3na8_A Putative dihydrodipicol 72.2 25 0.00084 33.0 10.6 111 239-362 33-149 (315)
59 3s5o_A 4-hydroxy-2-oxoglutarat 71.5 21 0.0007 33.3 9.8 113 239-362 23-141 (307)
60 2wkj_A N-acetylneuraminate lya 70.6 36 0.0012 31.6 11.2 110 240-362 21-136 (303)
61 4dpp_A DHDPS 2, dihydrodipicol 70.6 26 0.00088 33.7 10.4 124 224-361 53-183 (360)
62 1ulz_A Pyruvate carboxylase N- 69.8 8.5 0.00029 37.4 7.0 59 11-73 166-224 (451)
63 1xky_A Dihydrodipicolinate syn 69.6 49 0.0017 30.6 12.0 110 240-362 22-137 (301)
64 3mjf_A Phosphoribosylamine--gl 69.2 7.2 0.00025 38.1 6.3 51 11-66 157-207 (431)
65 2vpq_A Acetyl-COA carboxylase; 69.0 7.6 0.00026 37.8 6.5 59 11-73 166-224 (451)
66 3rst_A Signal peptide peptidas 69.0 9 0.00031 34.4 6.5 66 247-325 28-95 (240)
67 1f6k_A N-acetylneuraminate lya 68.6 48 0.0016 30.5 11.6 111 240-362 13-129 (293)
68 3fkr_A L-2-keto-3-deoxyarabona 68.6 47 0.0016 30.9 11.6 112 239-362 17-136 (309)
69 3h5d_A DHDPS, dihydrodipicolin 68.5 29 0.001 32.4 10.2 111 239-362 16-133 (311)
70 3cpr_A Dihydrodipicolinate syn 68.5 55 0.0019 30.3 12.1 111 239-362 25-141 (304)
71 2v9d_A YAGE; dihydrodipicolini 67.6 39 0.0013 32.0 10.9 111 239-362 40-156 (343)
72 3lp8_A Phosphoribosylamine-gly 67.0 12 0.00041 36.6 7.4 51 11-66 173-223 (442)
73 3b4u_A Dihydrodipicolinate syn 66.4 51 0.0017 30.4 11.3 111 240-362 13-129 (294)
74 2r8w_A AGR_C_1641P; APC7498, d 65.6 51 0.0017 31.0 11.3 111 239-362 43-159 (332)
75 2ojp_A DHDPS, dihydrodipicolin 65.4 53 0.0018 30.1 11.2 110 240-362 11-126 (292)
76 1vkz_A Phosphoribosylamine--gl 64.2 11 0.00037 36.4 6.4 52 10-66 155-206 (412)
77 2w70_A Biotin carboxylase; lig 64.1 11 0.00038 36.6 6.5 59 11-73 168-226 (449)
78 2dzd_A Pyruvate carboxylase; b 63.3 10 0.00035 37.0 6.1 58 11-72 172-229 (461)
79 3m5v_A DHDPS, dihydrodipicolin 63.3 51 0.0017 30.5 10.7 109 240-362 18-133 (301)
80 3orq_A N5-carboxyaminoimidazol 60.6 6.3 0.00022 37.6 3.9 51 10-72 160-210 (377)
81 3e96_A Dihydrodipicolinate syn 59.2 48 0.0016 30.9 9.7 109 239-362 20-136 (316)
82 3eb2_A Putative dihydrodipicol 57.2 26 0.00088 32.5 7.4 111 239-362 13-129 (300)
83 3dz1_A Dihydrodipicolinate syn 56.7 77 0.0026 29.4 10.7 108 240-362 18-131 (313)
84 3daq_A DHDPS, dihydrodipicolin 56.6 72 0.0025 29.3 10.4 109 240-362 13-127 (292)
85 3d0c_A Dihydrodipicolinate syn 54.8 71 0.0024 29.7 10.1 110 239-362 20-136 (314)
86 3a5f_A Dihydrodipicolinate syn 53.8 64 0.0022 29.6 9.5 108 240-361 12-125 (291)
87 2cby_A ATP-dependent CLP prote 52.9 27 0.00094 30.5 6.5 73 242-328 30-104 (208)
88 3eth_A Phosphoribosylaminoimid 52.5 56 0.0019 31.0 9.1 28 44-71 149-176 (355)
89 2xcl_A Phosphoribosylamine--gl 52.3 25 0.00084 33.7 6.6 51 11-66 152-202 (422)
90 2rfg_A Dihydrodipicolinate syn 52.3 68 0.0023 29.5 9.5 105 245-362 15-125 (297)
91 2kln_A Probable sulphate-trans 51.6 67 0.0023 25.2 8.2 88 249-356 29-122 (130)
92 2fb9_A D-alanine:D-alanine lig 50.8 32 0.0011 31.8 6.9 46 11-66 165-210 (322)
93 4fu0_A D-alanine--D-alanine li 50.6 1.6E+02 0.0054 27.4 12.9 46 10-66 191-236 (357)
94 2yrx_A Phosphoribosylglycinami 48.4 26 0.00089 34.0 6.2 51 11-66 173-223 (451)
95 2ip4_A PURD, phosphoribosylami 48.3 26 0.0009 33.5 6.1 47 10-65 150-196 (417)
96 2r91_A 2-keto-3-deoxy-(6-phosp 48.3 1.3E+02 0.0044 27.4 10.6 106 240-362 9-121 (286)
97 3bf0_A Protease 4; bacterial, 47.9 16 0.00055 37.4 4.7 64 247-324 321-386 (593)
98 1yg6_A ATP-dependent CLP prote 47.7 29 0.001 29.9 5.8 62 250-328 40-103 (193)
99 3dbi_A Sugar-binding transcrip 47.0 93 0.0032 28.1 9.5 119 210-360 182-309 (338)
100 3mvn_A UDP-N-acetylmuramate:L- 46.7 59 0.002 26.9 7.4 94 242-360 41-137 (163)
101 2lnd_A De novo designed protei 46.2 55 0.0019 24.6 6.1 52 308-361 50-101 (112)
102 1rvv_A Riboflavin synthase; tr 45.3 1.4E+02 0.0046 25.1 9.3 124 210-360 13-148 (154)
103 2i87_A D-alanine-D-alanine lig 45.1 40 0.0014 31.6 6.8 45 11-66 186-230 (364)
104 3ezx_A MMCP 1, monomethylamine 44.7 1.6E+02 0.0054 25.7 10.2 103 225-358 112-214 (215)
105 2vc6_A MOSA, dihydrodipicolina 44.7 1E+02 0.0035 28.2 9.3 105 245-362 15-125 (292)
106 2yw2_A Phosphoribosylamine--gl 44.6 35 0.0012 32.6 6.3 51 10-65 151-201 (424)
107 2qk4_A Trifunctional purine bi 44.5 35 0.0012 33.1 6.3 50 11-65 179-228 (452)
108 1hqk_A 6,7-dimethyl-8-ribityll 44.3 1.3E+02 0.0045 25.1 9.1 124 210-360 13-148 (154)
109 2xij_A Methylmalonyl-COA mutas 44.1 67 0.0023 34.0 8.7 95 240-360 634-730 (762)
110 3qk7_A Transcriptional regulat 43.4 1.1E+02 0.0038 26.9 9.3 91 210-320 127-226 (294)
111 2pn1_A Carbamoylphosphate synt 42.0 25 0.00084 32.2 4.6 46 10-70 163-209 (331)
112 1e4e_A Vancomycin/teicoplanin 41.8 31 0.001 32.1 5.3 46 11-67 180-225 (343)
113 3zwt_A Dihydroorotate dehydrog 40.7 86 0.0029 30.0 8.3 68 241-318 150-229 (367)
114 3nq4_A 6,7-dimethyl-8-ribityll 40.2 1.7E+02 0.0056 24.6 12.0 125 209-360 12-149 (156)
115 1kz1_A 6,7-dimethyl-8-ribityll 39.1 1.5E+02 0.0052 24.9 8.7 125 210-360 18-155 (159)
116 2f6i_A ATP-dependent CLP prote 38.4 56 0.0019 28.8 6.1 72 242-328 42-115 (215)
117 1y7o_A ATP-dependent CLP prote 38.3 49 0.0017 29.1 5.8 50 267-329 72-123 (218)
118 3h75_A Periplasmic sugar-bindi 37.6 2.3E+02 0.0079 25.5 12.1 125 209-360 145-278 (350)
119 3lwb_A D-alanine--D-alanine li 37.6 24 0.00081 33.7 3.8 47 10-67 202-248 (373)
120 3tml_A 2-dehydro-3-deoxyphosph 37.5 67 0.0023 29.8 6.8 60 274-340 19-92 (288)
121 2hmc_A AGR_L_411P, dihydrodipi 37.3 2.3E+02 0.008 26.6 10.7 105 240-360 36-147 (344)
122 2i0f_A 6,7-dimethyl-8-ribityll 36.4 1.9E+02 0.0065 24.2 10.6 116 221-360 30-150 (157)
123 1th8_B Anti-sigma F factor ant 36.0 1.2E+02 0.0042 22.6 7.2 71 270-355 43-113 (116)
124 3egc_A Putative ribose operon 35.5 2.2E+02 0.0074 24.7 9.9 120 209-360 125-253 (291)
125 1c2y_A Protein (lumazine synth 35.3 2E+02 0.0068 24.1 11.0 125 210-360 14-148 (156)
126 3d8u_A PURR transcriptional re 34.6 2.2E+02 0.0074 24.4 11.8 119 210-360 121-248 (275)
127 1iow_A DD-ligase, DDLB, D-ALA\ 33.3 52 0.0018 29.4 5.3 41 11-62 153-193 (306)
128 2fep_A Catabolite control prot 33.2 2.4E+02 0.0081 24.6 9.7 78 210-302 134-218 (289)
129 2nwr_A 2-dehydro-3-deoxyphosph 33.1 1.1E+02 0.0037 28.0 7.4 62 273-340 4-79 (267)
130 1tjy_A Sugar transport protein 33.0 2.6E+02 0.009 24.8 10.6 121 209-360 128-256 (316)
131 3vmm_A Alanine-anticapsin liga 32.6 2.5E+02 0.0086 27.4 10.6 44 11-54 189-234 (474)
132 3viv_A 441AA long hypothetical 32.5 57 0.002 29.1 5.3 50 267-329 36-90 (230)
133 3ax6_A Phosphoribosylaminoimid 32.4 16 0.00056 34.4 1.7 46 11-72 148-193 (380)
134 2hsg_A Glucose-resistance amyl 32.2 2.5E+02 0.0085 25.1 9.9 118 210-359 178-305 (332)
135 3gv0_A Transcriptional regulat 32.1 2.5E+02 0.0086 24.4 11.5 119 210-360 128-255 (288)
136 1qpz_A PURA, protein (purine n 32.0 2.1E+02 0.0071 25.7 9.3 119 209-359 177-304 (340)
137 2rgy_A Transcriptional regulat 30.6 2.2E+02 0.0074 24.9 9.0 121 209-359 128-255 (290)
138 4dgf_A Sulfate transporter sul 30.4 1.2E+02 0.0041 23.8 6.5 78 270-362 52-132 (135)
139 3g85_A Transcriptional regulat 30.2 2.7E+02 0.0091 24.0 11.8 121 210-360 128-257 (289)
140 3fs2_A 2-dehydro-3-deoxyphosph 30.1 1.1E+02 0.0036 28.6 6.8 60 274-340 43-116 (298)
141 1h4x_A SPOIIAA, anti-sigma F f 29.5 1.3E+02 0.0045 22.6 6.4 74 269-358 41-114 (117)
142 3p04_A Uncharacterized BCR; SE 29.4 78 0.0027 24.0 4.7 42 273-329 7-48 (87)
143 4hyl_A Stage II sporulation pr 28.9 1.3E+02 0.0044 22.7 6.3 64 278-355 49-112 (117)
144 1dbq_A Purine repressor; trans 28.8 2.4E+02 0.0084 24.2 9.0 91 210-320 127-226 (289)
145 1p9l_A Dihydrodipicolinate red 28.8 3.1E+02 0.011 24.3 10.6 50 309-362 69-119 (245)
146 3h5o_A Transcriptional regulat 28.8 3.2E+02 0.011 24.5 10.0 78 210-302 179-262 (339)
147 3t6o_A Sulfate transporter/ant 28.3 1.7E+02 0.0059 22.3 7.0 74 268-355 46-119 (121)
148 1qd1_A Formiminotransferase-cy 28.0 2.6E+02 0.0088 26.3 9.0 30 316-345 95-128 (325)
149 3bf0_A Protease 4; bacterial, 27.7 89 0.003 31.8 6.4 65 248-329 70-138 (593)
150 3rot_A ABC sugar transporter, 27.5 3.1E+02 0.011 23.9 11.7 123 209-361 130-260 (297)
151 3lp8_A Phosphoribosylamine-gly 26.7 2.4E+02 0.0082 27.1 9.1 49 292-355 97-154 (442)
152 3uug_A Multiple sugar-binding 26.6 2.4E+02 0.0081 25.0 8.6 95 246-360 181-276 (330)
153 1y80_A Predicted cobalamin bin 26.5 3E+02 0.01 23.4 10.8 102 225-359 108-209 (210)
154 3kjx_A Transcriptional regulat 26.5 2E+02 0.0068 26.0 8.1 119 210-360 186-314 (344)
155 2nuw_A 2-keto-3-deoxygluconate 26.2 3.6E+02 0.012 24.3 10.1 107 240-362 9-122 (288)
156 3sz8_A 2-dehydro-3-deoxyphosph 26.2 1.2E+02 0.0041 28.1 6.4 60 274-340 22-95 (285)
157 3gyb_A Transcriptional regulat 26.1 3.1E+02 0.011 23.5 10.5 119 209-360 118-243 (280)
158 3brq_A HTH-type transcriptiona 26.0 3.1E+02 0.011 23.5 10.8 120 209-360 139-267 (296)
159 1req_A Methylmalonyl-COA mutas 25.1 1.8E+02 0.0063 30.5 8.2 97 240-360 626-722 (727)
160 3ln7_A Glutathione biosynthesi 24.9 43 0.0015 35.4 3.4 44 11-65 540-587 (757)
161 1f76_A Dihydroorotate dehydrog 24.4 2.9E+02 0.01 25.3 9.0 61 250-319 152-221 (336)
162 2php_A Uncharacterized protein 24.3 3.5E+02 0.012 23.4 9.2 20 340-361 161-180 (192)
163 2r7k_A 5-formaminoimidazole-4- 24.2 65 0.0022 30.7 4.3 53 10-66 164-216 (361)
164 1tg6_A Putative ATP-dependent 24.0 1.4E+02 0.0047 27.5 6.3 75 241-329 84-160 (277)
165 4b4o_A Epimerase family protei 23.7 2E+02 0.0068 25.4 7.4 41 250-298 195-236 (298)
166 4dim_A Phosphoribosylglycinami 23.5 82 0.0028 29.6 4.9 45 11-64 159-203 (403)
167 3i0p_A Malate dehydrogenase; a 23.4 1.2E+02 0.0041 29.0 6.0 64 268-339 280-344 (365)
168 2o20_A Catabolite control prot 22.9 3.8E+02 0.013 23.8 9.3 116 210-359 181-305 (332)
169 3h5t_A Transcriptional regulat 22.9 4.2E+02 0.014 23.9 11.1 102 225-360 228-333 (366)
170 3u4j_A NAD-dependent aldehyde 22.1 5.3E+02 0.018 25.5 10.8 38 267-320 238-275 (528)
171 3k4h_A Putative transcriptiona 21.8 3.8E+02 0.013 23.0 13.9 119 210-360 132-259 (292)
172 2i2x_B MTAC, methyltransferase 21.7 3.1E+02 0.011 24.3 8.2 105 220-360 139-243 (258)
173 1xrs_B D-lysine 5,6-aminomutas 21.7 4.4E+02 0.015 23.8 9.2 95 240-359 159-256 (262)
174 3bul_A Methionine synthase; tr 20.8 6E+02 0.02 25.7 10.9 107 226-361 119-225 (579)
175 1w3i_A EDA, 2-keto-3-deoxy glu 20.8 4.7E+02 0.016 23.6 11.1 107 240-362 9-122 (293)
176 2h0a_A TTHA0807, transcription 20.6 3.9E+02 0.013 22.7 9.8 115 210-359 115-244 (276)
177 1jub_A Dihydroorotate dehydrog 20.5 4.1E+02 0.014 23.9 9.0 61 243-319 99-168 (311)
178 3llo_A Prestin; STAS domain, c 20.3 2.3E+02 0.0077 22.2 6.4 71 268-355 62-138 (143)
179 3ezx_A MMCP 1, monomethylamine 20.3 2.7E+02 0.0092 24.1 7.3 47 312-358 96-142 (215)
180 3s2u_A UDP-N-acetylglucosamine 20.3 2.7E+02 0.0093 25.7 7.8 55 292-354 197-252 (365)
181 1ujp_A Tryptophan synthase alp 20.1 2.8E+02 0.0096 25.0 7.6 31 243-279 22-52 (271)
No 1
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=100.00 E-value=9.3e-88 Score=673.44 Aligned_cols=354 Identities=44% Similarity=0.808 Sum_probs=329.3
Q ss_pred CCccccCccCeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCC--CceEEEEEEEeCCCCeEEEeccCCC
Q 017966 1 MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPH--NQEYYLSIVSDRLGCTISFSECGGI 78 (363)
Q Consensus 1 ~~~GgRGKaGGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~--~~E~ylgi~~D~~~p~ii~s~~GGv 78 (363)
+++|||||+|||+++.|++|+++++++|+++...++.|.+++++||||+|+++ ++|+|+|+++||.+|+|+||++|||
T Consensus 61 v~~ggRgk~GGV~l~~s~eev~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~s~~GGv 140 (425)
T 3mwd_A 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGV 140 (425)
T ss_dssp SSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEESSCST
T ss_pred cccCCCCcCCeEEEECCHHHHHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEEECCCCc
Confidence 46899999999999999999999999999999865567778999999999976 5999999999999999999999999
Q ss_pred ccccccCceEEEecCCccCCCHHhH-HhHHhCCChhHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCceEEeeeee
Q 017966 79 EIEENWDKVKTIFLPTEKHMTLDAC-APLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRG 156 (363)
Q Consensus 79 ~vE~~~d~~~~~pi~~~~~i~~~~a-~~ll~g~~~~d~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~~alDaki 156 (363)
+||+++|++.++|+++..++....+ ++++.++++.++++++++|.+||++|.++|++++|||||++ ++| ++|+|||+
T Consensus 141 ~IE~vad~~~~~~i~~~~~l~~~~~~~~ll~g~~~~d~~~la~~l~~L~~lf~d~d~~~lEINPLvvt~~g-v~AlDAki 219 (425)
T 3mwd_A 141 DVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAA 219 (425)
T ss_dssp TCCSHHHHSEEEEEETTCCCCHHHHHHTTTTTSCTTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCEEE
T ss_pred cHhHhhcccceEecCCccccCHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCCccEEEeeeeEEcCCc-eEEEecee
Confidence 9999999887778888777888777 67888899899999999999999999999999999999999 665 99999999
Q ss_pred eecchhhhcccccccccccCCCCCCCCChhhhcccccchhhhccCCceEecCCCcEEEEecCCcHHHHHHHHHHhcCCCC
Q 017966 157 ELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS 236 (363)
Q Consensus 157 ~ldd~a~~R~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg 236 (363)
++||||+||||++|..+++|.+|.++.+|+|.++.++|++.+++++++||+|+||||||+||||++|+|||+|..+ ||
T Consensus 220 ~lDDnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~a~~~~~~~l~yv~ldG~Ig~mvNGaGlamat~D~i~~~--Gg 297 (425)
T 3mwd_A 220 KVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDL--GG 297 (425)
T ss_dssp EEEGGGHHHHHHHHCSCCCCCCSSSCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHT--TC
T ss_pred ecccchhhhChhhhhhhhccccccccCChhhhhhhhhhhhhhhccCccEEecCCeEEEEecCchHHHHHHHHHHHc--CC
Confidence 9999999999999998899888999999999999999999999999999999999999999999999999999997 88
Q ss_pred --CCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEE
Q 017966 237 --ELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV 314 (363)
Q Consensus 237 --~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvv 314 (363)
+||||+|+||+|++++++++++.+++++++||+||++||||||||++|++||+||+||++|+++...++...++||||
T Consensus 298 ~~~pANflD~gG~a~~e~v~~~~~~~l~ii~~d~~vk~i~vnIfGGI~~cd~vA~t~~GIi~A~~~~~~~~~~~~~PivV 377 (425)
T 3mwd_A 298 VNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFV 377 (425)
T ss_dssp GGGBCEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEE
T ss_pred CcCCcceEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCcccHHHHHHHHhHHHHHHHHhhhccccCCCcEEE
Confidence 799999999999999999998888888888999999999999999999999999999999999975322235799999
Q ss_pred EeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHH
Q 017966 315 RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 357 (363)
Q Consensus 315 rl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~ 357 (363)
|++|||+++|+++|++.+++.|+|+|+||++++|++.|.+|+.
T Consensus 378 Rl~Gtn~~eg~~il~~~g~~lgip~~~~gpe~~~~~i~~~a~~ 420 (425)
T 3mwd_A 378 RRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG 420 (425)
T ss_dssp ECBSTTHHHHHHHHHHHHHHHTCCEEEECTTSCTTHHHHHHTT
T ss_pred ECCcCCHHHHHHHHHhCCcccCCceEEeCccchHHHHHHHHhc
Confidence 9999999999999999888888999999999999999999975
No 2
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-84 Score=690.00 Aligned_cols=356 Identities=44% Similarity=0.800 Sum_probs=333.5
Q ss_pred CCccccCccCeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCC--CceEEEEEEEeCCCCeEEEeccCCC
Q 017966 1 MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPH--NQEYYLSIVSDRLGCTISFSECGGI 78 (363)
Q Consensus 1 ~~~GgRGKaGGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~--~~E~ylgi~~D~~~p~ii~s~~GGv 78 (363)
+++|||||+|||+++.|++|+++++++|+++...++.|.+++++||||+|+++ ++|||+|+++||.+|+|+||.+|||
T Consensus 61 v~~GgRGKaGGVkL~~s~eEa~~aa~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~gpvIm~s~eGGv 140 (829)
T 3pff_A 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGV 140 (829)
T ss_dssp SSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEESSCST
T ss_pred ccccCCCcCCeEEEECCHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCCCCEEEEECCCCc
Confidence 47899999999999999999999999999999864567778999999999976 5999999999999999999999999
Q ss_pred ccccccCceEEEecCCccCCCHHhH-HhHHhCCChhHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCceEEeeeee
Q 017966 79 EIEENWDKVKTIFLPTEKHMTLDAC-APLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRG 156 (363)
Q Consensus 79 ~vE~~~d~~~~~pi~~~~~i~~~~a-~~ll~g~~~~d~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~~alDaki 156 (363)
+||+++|+++++|++|..+++.+++ ++++.++++.++++++++|.+||++|.++|++++|||||++ ++| ++|+|||+
T Consensus 141 dIE~vad~~~~~~I~p~~gl~~~~a~~~ll~g~~~~d~~ala~~L~~Ly~lf~d~d~t~lEINPLvvt~dg-v~ALDAKi 219 (829)
T 3pff_A 141 DVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAA 219 (829)
T ss_dssp TCCCHHHHSEEEEEETTCCCCHHHHHHTTTTTSCGGGHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCCEE
T ss_pred chhhhhhhceEEecCCccccCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCccEEEeeceEecCCc-eEEEecee
Confidence 9999999888889999888999988 77888999999999999999999999999999999999999 766 99999999
Q ss_pred eecchhhhcccccccccccCCCCCCCCChhhhcccccchhhhccCCceEecCCCcEEEEecCCcHHHHHHHHHHhcCCCC
Q 017966 157 ELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS 236 (363)
Q Consensus 157 ~ldd~a~~R~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg 236 (363)
++||||+|||+++|..+++|.+|.++.+|+|.++.++|++++++++|+||+|+||||||+||||++|+|||+|..+ ||
T Consensus 220 ~lDDnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~ak~~a~~~l~yv~ldG~Ig~mvNGaGlamaTmD~I~~~--Gg 297 (829)
T 3pff_A 220 KVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDL--GG 297 (829)
T ss_dssp EEEGGGHHHHHHHHCSCCCCCCSSCCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHT--TC
T ss_pred eeccchhhhCchhhhhhhccccccccCChhhhhhhhhhhhhccccCccEEecCCeEEeeccCchHHHHHHHHHHHc--CC
Confidence 9999999999999998898888999999999999999999999999999999999999999999999999999997 77
Q ss_pred --CCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEE
Q 017966 237 --ELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV 314 (363)
Q Consensus 237 --~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvv 314 (363)
+||||+|+||+|+.++++++++.+++++++||++|++||||||||++||+||+||+||++|+++...++...++||||
T Consensus 298 ~~~pANFlDvGGga~~e~v~~~~~~~l~ii~~d~~vk~ilvNIfGGI~~cd~VA~tf~GIi~A~k~~~~~~~~~~vPiVV 377 (829)
T 3pff_A 298 VNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFV 377 (829)
T ss_dssp TTTBCEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSCCHHHHHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCCCceeEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCccchHHHHHHHhHHHHHHHHhhhhcccCCceEEE
Confidence 799999999999999999998988888888999999999999999999999999999999999975433335799999
Q ss_pred EeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 017966 315 RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 359 (363)
Q Consensus 315 rl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~ 359 (363)
||+|||+++|+++|++.+++.|+|+++||++++|++.|++|+...
T Consensus 378 Rl~GtN~eeg~~il~~~g~~lgl~i~v~g~e~~mt~iv~~a~~~~ 422 (829)
T 3pff_A 378 RRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALGHR 422 (829)
T ss_dssp ECBSTTHHHHHHHHHHHHHHHCCCEEEECTTSCTTHHHHHHHTSS
T ss_pred ECCCCCHHHHHHHHHhCccccCCcEEEeCCcccHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999998653
No 3
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=100.00 E-value=2.6e-74 Score=573.46 Aligned_cols=327 Identities=24% Similarity=0.336 Sum_probs=299.3
Q ss_pred CCccccCcc-------CeEEeeCCHHHHHHHHHHHhcccccc--cCCce-eeeEEEEeeecCCCceEEEEEEEeCC-C-C
Q 017966 1 MLFGKRGKS-------GLVALNLDLAQVAEFVKGRLGTEVEM--GGCKG-PITTFIVEPFVPHNQEYYLSIVSDRL-G-C 68 (363)
Q Consensus 1 ~~~GgRGKa-------GGV~l~~~~eea~~aa~~ll~~~~~~--~~~~~-~v~gvLVe~~~~~~~E~ylgi~~D~~-~-p 68 (363)
++.|||||. |||+++.|++|+++++++++++.+.+ +++.+ ++++||||+|+++++|+|+++.+||. + |
T Consensus 49 i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~p 128 (395)
T 2fp4_B 49 ILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGP 128 (395)
T ss_dssp CSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEE
T ss_pred eccCCCccCccccCCcCCEEEECCHHHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCce
Confidence 468999999 99999999999999999999886432 23333 68999999999999999999999998 3 8
Q ss_pred eEEEeccCCCccccc----cCceEEEecCCccCCCHHhHHhHHh--CCChhHHHHHHHHHHHHHHHhhccCcceeeeeee
Q 017966 69 TISFSECGGIEIEEN----WDKVKTIFLPTEKHMTLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPF 142 (363)
Q Consensus 69 ~ii~s~~GGv~vE~~----~d~~~~~pi~~~~~i~~~~a~~ll~--g~~~~d~~~l~~~l~~L~~l~~~~d~~~lEINPL 142 (363)
++++|.+||++||++ +|+++++|++|..+++++++++++. |+++.+.+++++++.+||++|.++|++++|||||
T Consensus 129 vi~~s~~GG~~iE~va~~~~d~i~~~~idp~~~l~~~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~~~d~~~lEINPl 208 (395)
T 2fp4_B 129 VLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPF 208 (395)
T ss_dssp EEEEESSCSSCHHHHHHHCGGGCEEEECCTTTCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEECCCCccceeccccCCceEEEEecCCCCCCCHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhhhCCeEEEEeeeE
Confidence 999999999999998 9999999999999999999999988 6778899999999999999999999999999999
Q ss_pred ee-cCCceEEeeeeeeecchhhhcccccccccccCCCCCCCCChhhhcccccchhhhccCCceEecCCCcEEEEecCCcH
Q 017966 143 TL-VNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGA 221 (363)
Q Consensus 143 ~v-~~g~~~alDaki~ldd~a~~R~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~l~g~I~ii~NG~G~ 221 (363)
++ ++|+++|+|||+.+||||+||||+++. ++++ ++.++.|.+ +++++++|++++||||||+||||+
T Consensus 209 ~~~~~g~~~alDaki~~ddnA~~r~~~~~~-~~d~----~~~~~~e~~--------a~~~~l~yv~l~G~Ig~~~nGaGl 275 (395)
T 2fp4_B 209 GETPEGQVVCFDAKINFDDNAEFRQKDIFA-MDDK----SENEPIENE--------AAKYDLKYIGLDGNIACFVNGAGL 275 (395)
T ss_dssp EECTTSCEEECSEEEEECGGGGGGCHHHHT-TCCC----TTSCHHHHH--------HHHTTCEEEECSSSEEEEESSHHH
T ss_pred EEcCCCCEEEEEeEEEecccccccCcchhh-hcCC----CccChhhhh--------HHHcCCceeccCCeEEEEecCchH
Confidence 99 888899999999999999999999753 5554 566777654 668899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHh
Q 017966 222 SVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREK 301 (363)
Q Consensus 222 ~~~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~ 301 (363)
+|+|||++..+ ||+||||+|+||+|++++|+++++++++ ||++|+||||+||||++|++|| +||++++++.
T Consensus 276 am~t~D~i~~~--Gg~paNflDvgG~a~~e~~~~al~~il~----d~~v~~ilvni~ggi~~~d~vA---~gii~a~~~~ 346 (395)
T 2fp4_B 276 AMATCDIIFLN--GGKPANFLDLGGGVKESQVYQAFKLLTA----DPKVEAILVNIFGGIVNCAIIA---NGITKACREL 346 (395)
T ss_dssp HHHHHHHHHHT--TCCBCEEEECCSSCCHHHHHHHHHHHHH----CTTCCEEEEEEEESSSCHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCcCCcEEECCCCCHHHHHHHHHHHhC----CCCCCEEEEEecCCccCcHHHH---HHHHHHHHhc
Confidence 99999999997 8999999999999999999999999998 9999999999999999999999 9999999987
Q ss_pred hhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhHh
Q 017966 302 ESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 361 (363)
Q Consensus 302 ~~~~~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~~ 361 (363)
. .++|||+|++|+|+++++++|++ +|+|+++ ++||++|++++++++++
T Consensus 347 ~-----~~~Pivvrl~G~n~~~g~~~L~~----~gl~~~~---~~~~~~Aa~~~v~~~~~ 394 (395)
T 2fp4_B 347 E-----LKVPLVVRLEGTNVHEAQNILTN----SGLPITS---AVDLEDAAKKAVASVTK 394 (395)
T ss_dssp T-----CCSCEEEEEEETTHHHHHHHHHH----TCSCCEE---CSSHHHHHHHHHHTTC-
T ss_pred C-----CCCeEEEEcCCCCHHHHHHHHHH----CCCceEe---CCCHHHHHHHHHHHhhc
Confidence 4 47999999999999999999996 8999976 58999999999999875
No 4
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=100.00 E-value=3e-73 Score=565.02 Aligned_cols=326 Identities=24% Similarity=0.324 Sum_probs=299.4
Q ss_pred CccccCccCeEEeeCCHHHHHHHHHHHhcccccc--cCCce-eeeEEEEeeecCCCceEEEEEEEeCC-C-CeEEEeccC
Q 017966 2 LFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEM--GGCKG-PITTFIVEPFVPHNQEYYLSIVSDRL-G-CTISFSECG 76 (363)
Q Consensus 2 ~~GgRGKaGGV~l~~~~eea~~aa~~ll~~~~~~--~~~~~-~v~gvLVe~~~~~~~E~ylgi~~D~~-~-p~ii~s~~G 76 (363)
+.|||||+|||+++.|++|+++++++++++...+ ++|.+ .+++||||+|+++++|+|+++.+||. + |++++|.+|
T Consensus 50 ~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~G 129 (388)
T 2nu8_B 50 HAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEG 129 (388)
T ss_dssp SSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCT
T ss_pred CCCCCCccCCEEEECCHHHHHHHHHHHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCC
Confidence 5789999999999999999999999999876532 34443 68899999999999999999999998 4 889999999
Q ss_pred CCccccc----cCceEEEecCCccCCCHHhHHhHHh--CCChhHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCce
Q 017966 77 GIEIEEN----WDKVKTIFLPTEKHMTLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEP 149 (363)
Q Consensus 77 Gv~vE~~----~d~~~~~pi~~~~~i~~~~a~~ll~--g~~~~d~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~ 149 (363)
|++||.+ ||++++++++|..+++++++++|+. |+++.+++++++++.+||++|.++|++++|||||++ ++|++
T Consensus 130 Gv~iE~v~~~~pd~i~~~~i~P~~gl~~~~a~~~~~~lG~~~~~~~~~~~~l~~l~~~~~~~d~~~lEINPl~~~~~g~~ 209 (388)
T 2nu8_B 130 GVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDL 209 (388)
T ss_dssp TSCHHHHHHHCGGGEEEEECBTTTBCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCE
T ss_pred CcchhhccccCCceEEEEecCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCEEEEEecceEEcCCCCE
Confidence 9999987 4788999999988999999999987 678899999999999999999999999999999999 88889
Q ss_pred EEeeeeeeecchhhhcccccccccccCCCCCCCCChhhhcccccchhhhccCCceEecCCCcEEEEecCCcHHHHHHHHH
Q 017966 150 YPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTV 229 (363)
Q Consensus 150 ~alDaki~ldd~a~~R~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~l~g~I~ii~NG~G~~~~~~D~l 229 (363)
+|+|||+.+||||+||||+ |.+++++ ++.+|.|.+ +++++++|++++||||||+||||++|+|||++
T Consensus 210 ~alDaki~~dd~a~~r~~~-~~~~~~~----~~~~~~e~~--------a~~~~l~yv~l~G~Ig~~~nGaGl~m~t~D~i 276 (388)
T 2nu8_B 210 ICLDGKLGADGNALFRQPD-LREMRDQ----SQEDPREAQ--------AAQWELNYVALDGNIGCMVNGAGLAMGTMDIV 276 (388)
T ss_dssp EESCCEEEECGGGGGGCHH-HHHHCCG----GGSCHHHHH--------HHHTTCEEEECSSSEEEEESSHHHHHHHHHHH
T ss_pred EEEeeEEEeCCchhccCcc-hhhhcCc----cccChhHHH--------HHHhcCCccCCCCEEEEEeCCCchhhhhhHHH
Confidence 9999999999999999999 6667776 677888765 55778999999999999999999999999999
Q ss_pred HhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhccc
Q 017966 230 GDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAAR 309 (363)
Q Consensus 230 ~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~ 309 (363)
..+ ||+||||+|+||+|+.++|+++++++++ ||++|++|||+||||++|++|| +||++++++.. .+
T Consensus 277 ~~~--Gg~~aNflD~gG~a~~~~~~~~~~~il~----d~~v~~ilvni~ggi~~~~~vA---~gii~a~~~~~-----~~ 342 (388)
T 2nu8_B 277 KLH--GGEPANFLDVGGGATKERVTEAFKIILS----DDKVKAVLVNIFGGIVRCDLIA---DGIIGAVAEVG-----VN 342 (388)
T ss_dssp HHT--TCCBCEEEECCSCCCHHHHHHHHHHHHT----STTCCEEEEEEESCSSCHHHHH---HHHHHHHHHHT-----CC
T ss_pred HHc--CCCcCceeEecCCCCHHHHHHHHHHHhc----CCCCCEEEEEecCCcCCchHHH---HHHHHHHHhcC-----CC
Confidence 997 8999999999999999999999999998 9999999999999999999999 99999999974 47
Q ss_pred ceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhHh
Q 017966 310 MHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 361 (363)
Q Consensus 310 ~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~~ 361 (363)
+|||+|++|+|+++++++|++ +|+|+++ ++||++|++++++++++
T Consensus 343 ~pivvrl~G~n~~~g~~~l~~----~g~~~~~---~~~~~~aa~~~v~~~~~ 387 (388)
T 2nu8_B 343 VPVVVRLEGNNAELGAKKLAD----SGLNIIA---AKGLTDAAQQVVAAVEG 387 (388)
T ss_dssp SCEEEEEESTTHHHHHHHHHT----TCSSEEE---CSSHHHHHHHHHHHTTT
T ss_pred CeEEEEeCCCCHHHHHHHHHH----CCCceec---CCCHHHHHHHHHHHhhc
Confidence 999999999999999999996 8999975 68999999999999875
No 5
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=100.00 E-value=2.8e-71 Score=552.17 Aligned_cols=320 Identities=23% Similarity=0.325 Sum_probs=294.5
Q ss_pred CccccCccCeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCC-C-CeEEEeccCCCc
Q 017966 2 LFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL-G-CTISFSECGGIE 79 (363)
Q Consensus 2 ~~GgRGKaGGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~-~-p~ii~s~~GGv~ 79 (363)
+.|||||+|||+++.|++|+++++++++++.+ +...+++||||+|+++++|+|+|+++||. + |+|+||++||++
T Consensus 49 ~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~----~g~~~~~vlVEe~v~~g~El~vgv~~D~~~g~pvi~~s~~GGv~ 124 (397)
T 3ufx_B 49 HVGGRGKAGGVKLADTPQEAYEKAQAILGMNI----KGLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVD 124 (397)
T ss_dssp SSSCTTTTTCEEEESSHHHHHHHHHHHTTCEE----TTEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCCSSC
T ss_pred ccCCCCccceEEEeCCHHHHHHHHHHhhhhhc----cCCccceEEEEEeecCCeeEEEEEEecCCCCCcEEEEeCCCCcc
Confidence 57999999999999999999999999998765 22468999999999999999999999998 4 789999999999
Q ss_pred cccc----cCceEEEecCCccCCCHHhHHhHHh--CCChhHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCceEEe
Q 017966 80 IEEN----WDKVKTIFLPTEKHMTLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPL 152 (363)
Q Consensus 80 vE~~----~d~~~~~pi~~~~~i~~~~a~~ll~--g~~~~d~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~~al 152 (363)
||++ ||+++++++++..++++.++++|+. |+++. +++++++|.+||++|.++|++++|||||++ ++|+++|+
T Consensus 125 iE~~a~~~pd~i~~~~i~~~~~l~~~~a~~~~~~lG~~g~-~~~l~~~l~~l~~l~~~~~~~~lEINPL~~~~~g~~~al 203 (397)
T 3ufx_B 125 IEEVAAERPEAIHKFWIDPHKGFRPFEAREMVKRAGLEGN-LNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAA 203 (397)
T ss_dssp HHHHHHHCGGGCEEEECBTTTBCCHHHHHHHHHHHTCCSC-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEES
T ss_pred HhhhcccCccceEEEecCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHcCCccEEEeeceEECCCCCEEEE
Confidence 9985 6789999999888899999999987 67777 999999999999999999999999999999 88889999
Q ss_pred eeeeeecchhhhcccccccccccCCCCCCCCChhhhcccccchhhhccCCceEecCCCcEEEEecCCcHHHHHHHHHHhc
Q 017966 153 DMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDL 232 (363)
Q Consensus 153 Daki~ldd~a~~R~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~l~g~I~ii~NG~G~~~~~~D~l~~~ 232 (363)
|||+++||||.||||+ |..++++ ++.+|+|.+ |++++++||+++||||||+||+|++|+|+|++..+
T Consensus 204 Daki~~ddnA~~r~~~-~~~~~~~----~~~~~~e~~--------a~~~~l~yv~l~g~I~ii~Ng~Gl~~~t~D~i~~~ 270 (397)
T 3ufx_B 204 DAKIVLDDNALFRHPD-LAELREV----EAEHPLEVE--------ASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRV 270 (397)
T ss_dssp SCEEEECGGGGGGCHH-HHTTHHH----HCSSHHHHH--------HHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHT
T ss_pred EeEEEecCcchhcchh-hhhhcCc----ccCCHhHHH--------HHHcCCCcccCCCcEEEEecCccHHHHHHHHHHHc
Confidence 9999999999999999 6568877 678888764 67889999999999999999999999999999997
Q ss_pred CCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceE
Q 017966 233 GYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHI 312 (363)
Q Consensus 233 g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pv 312 (363)
||+|+||+|+||+|++++|+++++++++ ||++|+||||+|||+++|++|| ++|++++++.+ .++||
T Consensus 271 --G~~~aN~lD~gG~a~~e~~~~al~~~l~----d~~v~~ilv~i~ggi~~~~~vA---~~i~~a~~~~~-----~~kPv 336 (397)
T 3ufx_B 271 --GGKPANFLDIGGGAKADVVYNALKVVLK----DPDVKGVFINIFGGITRADEVA---KGVIRALEEGL-----LTKPV 336 (397)
T ss_dssp --TCCBSEEEECCSCCCHHHHHHHHHHHHT----CTTCCEEEEEEEEEEEESHHHH---HHHHHHHTTTC-----CCSCE
T ss_pred --CCCcCCcEecCCCCCHHHHHHHHHHHHc----CCCCCEEEEECCCCCCCHHHHH---HHHHHHHHhhC-----CCCcE
Confidence 8999999999999999999999999998 9999999999999999999999 99999988764 47999
Q ss_pred EEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 313 FVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 313 vvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
|+|+.|+|+++++++|++ +|||. ++||++|+++++++++.+
T Consensus 337 vv~~~G~~~~~~~~~l~~----~gip~-----~~~~e~Aa~~~~~l~~~a 377 (397)
T 3ufx_B 337 VMRVAGTAEEEAKKLLEG----KPVYM-----YPTSIEAAKVTVAMKGGA 377 (397)
T ss_dssp EEEEEEECHHHHHHHTTT----SSEEE-----CSSHHHHHHHHHHSCCSC
T ss_pred EEEccCCCHHHHHHHHHh----CCCcc-----cCCHHHHHHHHHHHHHHh
Confidence 999888999999999986 89987 789999999999988754
No 6
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=99.91 E-value=1.7e-24 Score=200.74 Aligned_cols=152 Identities=19% Similarity=0.206 Sum_probs=128.3
Q ss_pred ccccCccCeEEee-CCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCC-CCeEEEeccCCCcc
Q 017966 3 FGKRGKSGLVALN-LDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL-GCTISFSECGGIEI 80 (363)
Q Consensus 3 ~GgRGKaGGV~l~-~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~-~p~ii~s~~GGv~v 80 (363)
.|+||+.|||.++ .|++|+.++++++++.... +.+...+.+|+||+|+++++|+|+++..|+. +|++++| .||+++
T Consensus 68 ~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~~~-~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~g~v~~~~-~Gg~~i 145 (238)
T 1wr2_A 68 ILHKSDAKVVMLNIKNEEELKKKWEEIHENAKK-YRPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFG-LGGIFV 145 (238)
T ss_dssp CCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHH-HCTTCCCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEE-ECSTTH
T ss_pred CCcCCccCCEEEeCCCHHHHHHHHHHHHHhhhh-hCCCCccceEEEEECCCCCeEEEEEEEeCCCCCcEEEEe-cCCcee
Confidence 5789999999995 8999999999999876653 3444567899999999989999999999996 6888999 999999
Q ss_pred ccccCceEEEecCCccCCCHHhHHhHHh---------CCCh---hHHHHHHHHHHHHHHHhhccC--cceeeeeeeee-c
Q 017966 81 EENWDKVKTIFLPTEKHMTLDACAPLIA---------TLPL---EFRGKIGDFIMGVFAVFQDLD--FSFIEMNPFTL-V 145 (363)
Q Consensus 81 E~~~d~~~~~pi~~~~~i~~~~a~~ll~---------g~~~---~d~~~l~~~l~~L~~l~~~~d--~~~lEINPL~v-~ 145 (363)
|.+.|..+.+ +| ++...++++.. |+++ .|+++++++|.+||++|.+.+ +.++|||||++ +
T Consensus 146 E~~~d~~~~~--~P---l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l~~~~~~~~~~~~~lEINPl~~~~ 220 (238)
T 1wr2_A 146 EILKDVTFRL--VP---ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYN 220 (238)
T ss_dssp HHHCCCEEEE--SS---CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEEECB
T ss_pred eeecceeeec--CC---CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEeccCeEEeC
Confidence 9998877764 34 44566665532 4444 799999999999999999886 99999999999 8
Q ss_pred CC-ceEEeeeeeeecch
Q 017966 146 NG-EPYPLDMRGELDDT 161 (363)
Q Consensus 146 ~g-~~~alDaki~ldd~ 161 (363)
+| +++|+||++.+|||
T Consensus 221 ~g~~~~alDa~~~~~~~ 237 (238)
T 1wr2_A 221 KGEGAVIVDSRIILKPK 237 (238)
T ss_dssp TTSCEEECCEEEEECCC
T ss_pred CCCcEEEEEEEEEeCCC
Confidence 87 79999999999997
No 7
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=99.86 E-value=1.3e-21 Score=198.00 Aligned_cols=159 Identities=19% Similarity=0.242 Sum_probs=130.0
Q ss_pred chhhhcccccccccccCCCCCCCCChhhhcccccchhhhccCCceEecC--CCcEEEEecCCcHHHHHHHHHHhcCCCCC
Q 017966 160 DTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNP--KGRIWTMVAGGGASVIYADTVGDLGYASE 237 (363)
Q Consensus 160 d~a~~R~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~l--~g~I~ii~NG~G~~~~~~D~l~~~g~gg~ 237 (363)
-+|+|||+.+. ..+ ++.|.. +....++| .+ ++||+||+||||++|+++|++..+ |++
T Consensus 261 ~~AafRqaGv~-~v~---------~~~El~--------~~~~~l~~-~~~~g~rvaiitngGG~~~laaD~~~~~--Gl~ 319 (457)
T 2csu_A 261 YEAAFKQSGVL-VAN---------TIDEML--------SMARAFSQ-PLPRGNKVAIMTNAGGPGVLTADELDKR--GLK 319 (457)
T ss_dssp HHHHHHHTTCE-EES---------SHHHHH--------HHHTTTTS-CCCSSSEEEEEESCHHHHHHHHHHHHTT--TCE
T ss_pred HHHHHHhCCCe-EEC---------CHHHHH--------HHHHHhcC-CCCCCCcEEEEECCHHHHHHHHHHHHHc--CCC
Confidence 45889999853 222 333432 22234555 55 899999999999999999999997 777
Q ss_pred ---------------------CCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEe-cccC--CchhHHhhhHHH
Q 017966 238 ---------------------LGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI-GGGI--ANFTDVATTFNG 293 (363)
Q Consensus 238 ---------------------paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~-~g~i--~~~~~vA~~~~g 293 (363)
++||+|++|++++++|.++++++++ ||++|++|+++ ++.. +.|++++ ++
T Consensus 320 l~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~~~al~~~l~----dp~vd~vlv~~~~~~~Gg~~~~~~a---~~ 392 (457)
T 2csu_A 320 LATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQ----DPNVDMLIAICVVPTFAGMTLTEHA---EG 392 (457)
T ss_dssp ECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHH----STTCSEEEEEEECCCSTTCCSSHHH---HH
T ss_pred CCCCCHHHHHHHHHhCccccccCCCeeCCCCCCHHHHHHHHHHHhc----CCCCCEEEEEccccccccCCchhHH---HH
Confidence 6899999999999999999999999 99999999999 4322 3478888 99
Q ss_pred HHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 294 IIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 294 iv~a~~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
+++++++.. .++|+++ |++|++.++++++|++ +|||+ |+++++|++++..+++
T Consensus 393 i~~al~~~~-----~~kPvvv~~~~g~~~~~~~~~L~~----~Gip~-----~~spe~Av~al~~l~~ 446 (457)
T 2csu_A 393 IIRAVKEVN-----NEKPVLAMFMAGYVSEKAKELLEK----NGIPT-----YERPEDVASAAYALVE 446 (457)
T ss_dssp HHHHHHHHC-----CCCCEEEEEECTTTTHHHHHHHHT----TTCCE-----ESSHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----CCCCEEEEeCCCcchHHHHHHHHh----CCCCc-----cCCHHHHHHHHHHHHH
Confidence 999998864 3588777 6999999999999986 89999 6899999999998876
No 8
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=99.32 E-value=7.6e-12 Score=126.71 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=101.2
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHhcCCCCC---------------------------CCceeeccCCCCHHHHHHHHHHH
Q 017966 208 PKGRIWTMVAGGGASVIYADTVGDLGYASE---------------------------LGNYAEYSGAPNEEEVLQYARVV 260 (363)
Q Consensus 208 l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~---------------------------paN~lD~gG~a~~e~~~~a~~~l 260 (363)
.+.||++++||||++.+++|++.. |.+-. .+||+|+. ++++|.++++.+
T Consensus 248 ~G~rvaivtn~Gg~gvlaaD~~~~-gl~l~~ls~~t~~~l~~~~~~~l~~~lp~~~s~~NPvD~~---d~~~~~~al~~~ 323 (480)
T 3dmy_A 248 SSGFICGLYTGGTLAAEAAGLLAG-HLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMI---DPTLRNQLIADL 323 (480)
T ss_dssp SCCEEEEEESCHHHHHHHHHHHHH-HTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSCCTTT---CCHHHHHHHHHG
T ss_pred CCCeEEEEECCHHHHHHHHHHHHh-CCCCCCCCHHHHhhhhhhhhccHHHhCcchhhccCCcCCC---CHHHHHHHHHHH
Confidence 367899999999999999999987 32211 25788876 789999999999
Q ss_pred HhhhccCCCCCeEEEE--e-cccCCch-hHHhhhHHHHHHHHHHhhhhhhcccce--EEEEeCCCC-H----HHHHHHHH
Q 017966 261 IDCATADPDGRKRALL--I-GGGIANF-TDVATTFNGIIRALREKESKLKAARMH--IFVRRGGPN-Y----QTGLAKMR 329 (363)
Q Consensus 261 l~~~~~~~~v~~vlv~--~-~g~i~~~-~~vA~~~~giv~a~~~~~~~~~~~~~p--vvvrl~G~~-~----~~~~~~l~ 329 (363)
++ ||+++++++. + |++.+++ +++| +.|+++.+... ..+| ++++++|+. . +++++.|+
T Consensus 324 l~----D~~vd~vlv~~v~~~~~~~d~~~~~a---~ai~~~~~~~~-----~~kp~v~v~~~~g~~~~~~~~~~~~~~L~ 391 (480)
T 3dmy_A 324 GA----KPQVRVLLLDVVIGFGATADPAASLV---SAWQKACAARL-----DNQPLYAIATVTGTERDPQCRSQQIATLE 391 (480)
T ss_dssp GG----CTTEEEEEEEEECSTTSCSCHHHHHH---HHHHHHHHTSC-----TTSCCEEEEEEESCTTSTTCHHHHHHHHH
T ss_pred hc----CCCCCEEEEEeecCCCCCCChHHHHH---HHHHHHHHhcc-----CCCCeEEEEEecCcccchhhHHHHHHHHH
Confidence 98 9999998883 3 6777875 7777 88888765431 1466 566688874 2 35678998
Q ss_pred hhccccCCceeecCCCCCHHHHHHHHHHHhHh
Q 017966 330 ALGEELGIPLEVYGPEATMTGICKQAIDCIMS 361 (363)
Q Consensus 330 ~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~~ 361 (363)
+ +|||+ |.++++||+.+..+++.
T Consensus 392 ~----aGIp~-----f~spe~Av~a~~~l~~~ 414 (480)
T 3dmy_A 392 D----AGIAV-----VSSLPEATLLAAALIHP 414 (480)
T ss_dssp H----TTCEE-----CSSHHHHHHHHHHHTSC
T ss_pred h----CCCcc-----cCCHHHHHHHHHHHHhc
Confidence 6 89999 78999999999998754
No 9
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=97.21 E-value=0.0014 Score=63.21 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=71.4
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHhcCCCCCCCceeeccCC--CCHHHHHHHHHHHHhhhccCCCCCeEEEEe-cccCCch
Q 017966 208 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGA--PNEEEVLQYARVVIDCATADPDGRKRALLI-GGGIANF 284 (363)
Q Consensus 208 l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~paN~lD~gG~--a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~-~g~i~~~ 284 (363)
..|+||+++-.|+++...+|.+...|. -...++-+|++ ++ -.+...++.+.+ ||++++|++.. .+|+.+
T Consensus 167 ~~G~vgivSqSG~l~~~i~~~~~~~g~--G~S~~VsiGn~~~~d-~~~~D~l~~~~~----Dp~T~~I~l~gEi~g~~e- 238 (334)
T 3mwd_B 167 RPGSVAYVSRSGGMSNELNNIISRTTD--GVYEGVAIGGDRYPG-STFMDHVLRYQD----TPGVKMIVVLGEIGGTEE- 238 (334)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHHSS--CEEEEEECCSSSSCS-SCHHHHHHHHHT----CTTCCEEEEEEESSSSHH-
T ss_pred CCCCEEEEeCchHHHHHHHHHHHhcCC--CeEEEEECCCCccCC-CCHHHHHHHHhc----CCCCCEEEEEEecCChHH-
Confidence 479999999999999999999998843 35678999998 44 447777777777 99999988875 666643
Q ss_pred hHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH
Q 017966 285 TDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 322 (363)
Q Consensus 285 ~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~ 322 (363)
+.+++++++.. .+||||+...|.+..
T Consensus 239 -------~~~~~~~r~~~-----~~KPVV~~kaGrs~~ 264 (334)
T 3mwd_B 239 -------YKICRGIKEGR-----LTKPIVCWCIGTCAT 264 (334)
T ss_dssp -------HHHHHHHHTTS-----CCSCEEEEEECTTCC
T ss_pred -------HHHHHHHHhhc-----CCCCEEEEEcCCCcc
Confidence 23445566532 479999987775553
No 10
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=97.02 E-value=0.0027 Score=64.14 Aligned_cols=121 Identities=12% Similarity=0.066 Sum_probs=91.1
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHhcCCCCCCCceeeccCCC-----CHHHHHHHHHHHHhhhccCCCCCeEEEEecccCC
Q 017966 208 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-----NEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 282 (363)
Q Consensus 208 l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a-----~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~ 282 (363)
..|+||+++-.|+++...+|.+... |--...++-+|+++ ..-.+...++.+.+ ||++++|++..=+ +
T Consensus 111 ~~G~vaivSqSGal~~~i~~~~~~~--g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~----Dp~T~~I~ly~E~-~- 182 (480)
T 3dmy_A 111 PEGNIGVIGASGTGIQELCSQIALA--GEGITHAIGLGGRDLSREVGGISALTALEMLSA----DEKSEVLAFVSKP-P- 182 (480)
T ss_dssp CEEEEEEEESCSHHHHHHHHHHHHT--TCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHT----CTTCCEEEEEESC-C-
T ss_pred CCCCEEEEeccHHHHHHHHHHHHHc--CCCceEEEEcCCCccccccCCCCHHHHHHHHhc----CCCCCEEEEEEec-C-
Confidence 3799999999999999999999987 44467888999984 55678888888887 9999998887732 2
Q ss_pred chhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 283 NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 283 ~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
.+.++ +.++++.+. .+||||+...|.+... |+ ++|+-. .+|++|....+.-++.
T Consensus 183 -~e~~~---~~f~~~ar~-------~~KPVV~~k~Grs~~g----~r----~~Gvir-----v~~~~el~~~a~~l~~ 236 (480)
T 3dmy_A 183 -AEAVR---LKIVNAMKA-------TGKPTVALFLGYTPAV----AR----DENVWF-----ASSLDEAARLACLLSR 236 (480)
T ss_dssp -CHHHH---HHHHHHHHH-------HCSCEEEEETTCCCSS----SE----ETTEEE-----ESSHHHHHHHHHHHHH
T ss_pred -CcHHH---HHHHHHHHh-------CCCCEEEEEeCCCCcc----cc----cCCEEE-----ECCHHHHHHHHHHHhc
Confidence 24555 666666653 2699999977765433 44 488844 5799998887766654
No 11
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=96.91 E-value=0.0024 Score=60.82 Aligned_cols=128 Identities=13% Similarity=0.170 Sum_probs=87.5
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHhcCCCCCCCceeeccCCCC-HHHHHHHHHHHHhhhccCCCCCeEEEEe-cccCCchh
Q 017966 208 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFT 285 (363)
Q Consensus 208 l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~-~e~~~~a~~~ll~~~~~~~~v~~vlv~~-~g~i~~~~ 285 (363)
..|+||+++-.|+++...+|.+...| --...++-+|+++. .-.+...++.+.+ ||++++|++.. .+|- ..
T Consensus 151 ~~G~va~vSqSG~l~~~~~~~~~~~g--~G~S~~vs~G~~~~~~~~~~d~l~~~~~----Dp~T~~I~l~~E~~g~--~e 222 (305)
T 2fp4_A 151 KKGRIGIVSRSGTLTYEAVHQTTQVG--LGQSLCVGIGGDPFNGTDFTDCLEIFLN----DPATEGIILIGEIGGN--AE 222 (305)
T ss_dssp CEEEEEEEESCSHHHHHHHHHHHHTT--CCEEEEEECCSSSSCSCCHHHHHHHHHH----CTTCCEEEEEEESSSS--HH
T ss_pred CCCCEEEEecchHHHHHHHHHHHhcC--CCeeEEeccCCCcCCCCCHHHHHHHHhc----CCCCcEEEEEEecCCc--hh
Confidence 36999999999999999999999874 34678899999984 4567788888888 99999988888 5443 22
Q ss_pred HHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH--------------------HHHHHHHHhhccccCCceeecCCC
Q 017966 286 DVATTFNGIIRALREKESKLKAARMHIFVRRGGPNY--------------------QTGLAKMRALGEELGIPLEVYGPE 345 (363)
Q Consensus 286 ~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~--------------------~~~~~~l~~~~~~~Gip~~~~~~~ 345 (363)
+-+ +.++++.+... ++||||+...|.+. +.-...|+ ++|+... ...
T Consensus 223 ~~~---~~f~~~~~~~~-----~~KPVv~~k~G~s~~~g~~~~Htgal~~~~~g~~~~~~aa~~----~aGv~~v--~~~ 288 (305)
T 2fp4_A 223 ENA---AEFLKQHNSGP-----KSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQ----SAGVVVS--MSP 288 (305)
T ss_dssp HHH---HHHHHHHSCST-----TCCCEEEEEECTTCCTTCCCSSTTCCCBTTBCCHHHHHHHHH----HTTCEEC--SST
T ss_pred hHH---HHHHHHHHHhc-----CCCCEEEEEecCCccccccccchhhhhccCCccHHHHHHHHH----HCCCeEe--CCH
Confidence 334 55555543311 37999998665443 11244555 4898541 124
Q ss_pred CCHHHHHHHHHH
Q 017966 346 ATMTGICKQAID 357 (363)
Q Consensus 346 ~~~~eav~~~~~ 357 (363)
+.+-++++..++
T Consensus 289 ~el~~~~~~~~~ 300 (305)
T 2fp4_A 289 AQLGTTIYKEFE 300 (305)
T ss_dssp TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555566665554
No 12
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=96.88 E-value=0.0054 Score=57.85 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=82.6
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHhcCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCCeEEEEe-cccCCchh
Q 017966 208 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLI-GGGIANFT 285 (363)
Q Consensus 208 l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~-e~~~~a~~~ll~~~~~~~~v~~vlv~~-~g~i~~~~ 285 (363)
..|+||+++-.|+++...+|.+...| --...++-+|+++.. -.+...++.+.+ ||++++|++.. .++- ..
T Consensus 143 ~~G~va~vsqSG~l~~~~~~~~~~~g--~G~s~~vs~G~~~~~~~~~~d~l~~~~~----D~~t~~I~l~~E~~~~--~~ 214 (288)
T 1oi7_A 143 KRGRVGIISRSGTLTYEAAAALSQAG--LGTTTTVGIGGDPVIGTTFKDLLPLFNE----DPETEAVVLIGEIGGS--DE 214 (288)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTT--CCEEEEEECCSSSCCSSCHHHHHHHHHT----CTTCCEEEEEECSSSS--HH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCC--CCEEEEEeeCCCcCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCCC--HH
Confidence 36999999999999999999999874 346788999999852 457777777777 99999988888 4432 22
Q ss_pred HHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHH----------------HHHhhccccCCceeecCCCCCHH
Q 017966 286 DVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLA----------------KMRALGEELGIPLEVYGPEATMT 349 (363)
Q Consensus 286 ~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~~~----------------~l~~~~~~~Gip~~~~~~~~~~~ 349 (363)
.-+ ...+++ . .+||||+...|.+...+++ ....+.+++|+.. .++++
T Consensus 215 ~~~---~~~~~~----~-----~~KPVv~~k~G~~~~~~~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~-----~~~~~ 277 (288)
T 1oi7_A 215 EEA---AAWVKD----H-----MKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPV-----ADTID 277 (288)
T ss_dssp HHH---HHHHHH----H-----CCSCEEEEESCC------------------CCSHHHHHHHHHHHTCCB-----CSSHH
T ss_pred HHH---HHHHHh----c-----CCCCEEEEEecCCCCccccCcchhhcccCCCCCHHHHHHHHHHCCCeE-----eCCHH
Confidence 323 223222 1 4799999988766533322 1222233477755 57777
Q ss_pred HHHHHHHHH
Q 017966 350 GICKQAIDC 358 (363)
Q Consensus 350 eav~~~~~~ 358 (363)
|....+.+.
T Consensus 278 el~~~~~~~ 286 (288)
T 1oi7_A 278 EIVELVKKA 286 (288)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766655443
No 13
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=96.74 E-value=0.0049 Score=58.42 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=68.5
Q ss_pred CCcEEEEecCCcHHHHHHHHHHhcCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCCeEEEEe-cccCCchhH
Q 017966 209 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTD 286 (363)
Q Consensus 209 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~-e~~~~a~~~ll~~~~~~~~v~~vlv~~-~g~i~~~~~ 286 (363)
.|+||+++-.|+++...+|.+...| --...++-+|+++.. -.+...++.+.+ ||++++|++.. .++- ...
T Consensus 151 ~G~va~vSqSG~l~~~~~~~~~~~g--~G~s~~vs~G~~~~~~~~~~d~l~~~~~----D~~T~~I~l~~E~~~~--~~~ 222 (297)
T 2yv2_A 151 EGGVAVVSRSGTLTYEISYMLTRQG--IGQSTVIGIGGDPIVGLSFTEALKLFQE----DPQTEALVLIGEIGGD--MEE 222 (297)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTT--CCEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCSEEEEEECSSSS--HHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC--CCeeEEEeeCCCcCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCCC--HHH
Confidence 6999999999999999999999874 346788999999842 456777777777 99999988888 4432 223
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH
Q 017966 287 VATTFNGIIRALREKESKLKAARMHIFVRRGGPNY 321 (363)
Q Consensus 287 vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~ 321 (363)
-+ ...++ ... .+||||+...|.+.
T Consensus 223 ~~---~~~~~---~~~-----~~KPVv~~k~G~s~ 246 (297)
T 2yv2_A 223 RA---AEMIK---KGE-----FTKPVIAYIAGRTA 246 (297)
T ss_dssp HH---HHHHH---TTS-----CCSCEEEEESCCC-
T ss_pred HH---HHHHH---hcc-----CCCCEEEEEeCCCC
Confidence 23 22222 211 47999999888766
No 14
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=96.69 E-value=0.0047 Score=58.44 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=66.9
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHhcCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCCeEEEEe-cccCCchh
Q 017966 208 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLI-GGGIANFT 285 (363)
Q Consensus 208 l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~-e~~~~a~~~ll~~~~~~~~v~~vlv~~-~g~i~~~~ 285 (363)
..|+||+++-.|+++...+|.+...| --...++-+|+++.. -.+...++.+.+ ||++++|++.. .++-. .
T Consensus 149 ~~G~va~vSqSG~l~~~~~~~~~~~g--~G~s~~vs~G~~~~~~~~~~d~l~~~~~----D~~T~~I~l~~E~~g~~--~ 220 (294)
T 2yv1_A 149 KEGSVGMVSRSGTLTYEIAHQIKKAG--FGVSTCVGIGGDPIVGLRYKEVLDLFEK----DDETEAIVMIGEIGGGA--E 220 (294)
T ss_dssp CEEEEEEEESCSHHHHHHHHHHHHTT--CCEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCSEEEEEEESSSSH--H
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCC--CCeEEEEeeCCCCCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCCCH--H
Confidence 36999999999999999999999874 346788999999842 456777777777 99999988888 54432 2
Q ss_pred HHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH
Q 017966 286 DVATTFNGIIRALREKESKLKAARMHIFVRRGGPNY 321 (363)
Q Consensus 286 ~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~ 321 (363)
..+ . +.+++ .+||||+...|.+.
T Consensus 221 ~~~---~---~~~~~-------~~KPVv~~k~G~~~ 243 (294)
T 2yv1_A 221 EEA---A---KFIEK-------MKKPVIGYIAGQSA 243 (294)
T ss_dssp HHH---H---HHHTT-------CSSCEEEEEECC--
T ss_pred HHH---H---HHHHh-------CCCCEEEEEecCCC
Confidence 212 1 12221 36999998777665
No 15
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=96.38 E-value=0.0097 Score=56.04 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=68.3
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHhcCCCCCCCceeeccCCCC-HHHHHHHHHHHHhhhccCCCCCeEEEEe-cccCCchh
Q 017966 208 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFT 285 (363)
Q Consensus 208 l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~-~e~~~~a~~~ll~~~~~~~~v~~vlv~~-~g~i~~~~ 285 (363)
..|+||+++-.|+++...+|.+...| --...++-+||++. .-.+...++.+.+ ||++++|++.. .++- ..
T Consensus 143 ~~G~i~~vsqSG~l~~~~~~~~~~~g--~G~s~~vs~G~~~~~~~~~~d~l~~l~~----D~~t~~I~l~~E~~~~--~~ 214 (288)
T 2nu8_A 143 KPGKVGIVSRSGTLTYEAVKQTTDYG--FGQSTCVGIGGDPIPGSNFIDILEMFEK----DPQTEAIVMIGEIGGS--AE 214 (288)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTT--CCEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCCEEEEEEESSSS--HH
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhcC--CCEEEEEeeCCCcCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCCC--HH
Confidence 36999999999999999999998873 33667888999884 3567788888887 99999988888 5443 23
Q ss_pred HHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH
Q 017966 286 DVATTFNGIIRALREKESKLKAARMHIFVRRGGPNY 321 (363)
Q Consensus 286 ~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~ 321 (363)
+.+ +..+++ . .+||||+...|.+.
T Consensus 215 ~~~---~~~~~~----~-----~~KPVv~~k~G~~~ 238 (288)
T 2nu8_A 215 EEA---AAYIKE----H-----VTKPVVGYIAGVTA 238 (288)
T ss_dssp HHH---HHHHHH----H-----CCSCEEEEEECTTC
T ss_pred HHH---HHHHHh----c-----CCCCEEEEEeCCCC
Confidence 333 334333 1 37999988665443
No 16
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=95.72 E-value=0.043 Score=58.83 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=69.7
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHhcCCCCCCCceeeccCCC-CHHHHHHHHHHHHhhhccCCCCCeEEEEe-cccCCchh
Q 017966 208 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFT 285 (363)
Q Consensus 208 l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a-~~e~~~~a~~~ll~~~~~~~~v~~vlv~~-~g~i~~~~ 285 (363)
..|+||+++-.|+++...+|.+...|.| ..-++-+|+++ ..-.+...++.+.+ ||++++|++.. .+| ....
T Consensus 653 ~~G~VgiVSqSGal~~~i~~~~~~~g~G--~S~~VsiGnd~~~d~~~~D~L~~l~~----Dp~T~~Ivly~Ei~g-~~f~ 725 (829)
T 3pff_A 653 RPGSVAYVSRSGGMSNELNNIISRTTDG--VYEGVAIGGDRYPGSTFMDHVLRYQD----TPGVKMIVVLGEIGG-TEEY 725 (829)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHHSSC--EEEEEECCSSSSCSSCHHHHHHHHHT----CTTCCEEEEEEESSS-SHHH
T ss_pred CCCcEEEEechhHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCCHHHHHHHHhh----CCCCCEEEEEEecCc-hHHH
Confidence 4689999999999999999999988543 56789999985 23457788888777 99999998888 654 2333
Q ss_pred HHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH
Q 017966 286 DVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 322 (363)
Q Consensus 286 ~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~ 322 (363)
++| + .+++.. .+||||+...|.++.
T Consensus 726 ~aA---~----~~~~~~-----~~KPVVa~kaGrsa~ 750 (829)
T 3pff_A 726 KIC---R----GIKEGR-----LTKPIVCWCIGTCAT 750 (829)
T ss_dssp HHH---H----HHHTTS-----CCSCEEEEEECSSTT
T ss_pred HHH---H----HHHhcc-----CCCCEEEEEecCcCc
Confidence 333 2 333211 479999987775544
No 17
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=95.15 E-value=0.076 Score=53.14 Aligned_cols=93 Identities=11% Similarity=0.159 Sum_probs=65.3
Q ss_pred CcEEEEecCCcHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhh
Q 017966 210 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVAT 289 (363)
Q Consensus 210 g~I~ii~NG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~ 289 (363)
|+||+++-.|+++...+|.+...| --...++-+|++++ -.+...++.+.+ ||++++|++..=+ +.+.
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~g--~G~s~~vs~G~~~~-~~~~d~l~~~~~----D~~t~~I~l~~E~-i~~~----- 216 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKED--IGFSKFISVGNMAD-VDFAELMEYLAD----TEEDKAIALYIEG-VRNG----- 216 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTT--CEESEEEECTTCCS-SCHHHHHHHHTT----CSSCCEEEEEESC-CSCH-----
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcC--CCeeEEEECCCcCC-CCHHHHHHHHhc----CCCCCEEEEEEec-CCCH-----
Confidence 999999999999999999999974 34678899999985 457777777777 9999998887721 1222
Q ss_pred hHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH
Q 017966 290 TFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 322 (363)
Q Consensus 290 ~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~ 322 (363)
+...++.+... .+||||+...|.+..
T Consensus 217 --~~f~~~a~~~~-----~~KPVv~~k~G~~~~ 242 (457)
T 2csu_A 217 --KKFMEVAKRVT-----KKKPIIALKAGKSES 242 (457)
T ss_dssp --HHHHHHHHHHH-----HHSCEEEEECC----
T ss_pred --HHHHHHHHHhc-----CCCCEEEEEcCCCcc
Confidence 22333333332 268999987776544
No 18
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=94.43 E-value=0.14 Score=52.24 Aligned_cols=55 Identities=9% Similarity=0.105 Sum_probs=43.4
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEEe
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 73 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~s 73 (363)
||.++.|.+|+.++++++..... -..++||++++..+|+.+.+..|..+.++.++
T Consensus 243 Gv~iv~~~~eL~~a~~~~~~~~~--------~~~vlVEe~I~g~rei~V~vl~d~~G~vv~l~ 297 (540)
T 3glk_A 243 GIRKAESAEDFPILFRQVQSEIP--------GSPIFLMKLAQHARHLEVQILADQYGNAVSLF 297 (540)
T ss_dssp -EEEECSTTTHHHHHHHHHHHST--------TCCEEEEECCSSEEEEEEEEEECTTSCEEEEE
T ss_pred CEEEECCHHHHHHHHHHHHhhcc--------CCCEEEEEecCCCcEEEEEEEEcCCCCEEEEe
Confidence 68888999999988877754221 24699999998779999999999988777664
No 19
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=94.36 E-value=0.2 Score=51.80 Aligned_cols=55 Identities=9% Similarity=0.105 Sum_probs=44.4
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEEe
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 73 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~s 73 (363)
||+++.|.+|+.+++++...... -..++||++++..+|+.+.+..|..+.++.++
T Consensus 259 Gv~iV~s~eEL~~a~~~a~~~~~--------~~~vlVEeyI~g~rei~V~vl~D~~G~vv~l~ 313 (587)
T 3jrx_A 259 GIRKAESAEDFPILFRQVQSEIP--------GSPIFLMKLAQHARHLEVQILADQYGNAVSLF 313 (587)
T ss_dssp SEEEECSTTTHHHHHHHHHHHST--------TCCEEEEECCCSCEEEEEEEEECSSSCEEEEE
T ss_pred CeEEeCCHHHHHHHHHHHHhhcc--------CCCEEEEEecCCCcEEEEEEEEcCCCCEEEEe
Confidence 68889999999988877754221 24699999999889999999999988777664
No 20
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=93.81 E-value=0.19 Score=49.48 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=40.8
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEEe
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 73 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~s 73 (363)
||.+..|.+|+.++++.+ + . ..++||++++.++|+.+.+.+|..+.+..+.
T Consensus 187 Gv~~v~~~~el~~a~~~~-~------~-----~~~lvEe~i~~~~Eisv~v~~~~~G~~~~~~ 237 (419)
T 4e4t_A 187 GQVRVSTAREARDAHAAL-G------G-----VPCVLEKRLPLKYEVSALIARGADGRSAAFP 237 (419)
T ss_dssp TEEEECSHHHHHHHHHHT-T------T-----CCEEEEECCCEEEEEEEEEEECTTSCEEECC
T ss_pred ceEEECCHHHHHHHHHhc-C------C-----CcEEEeecCCCCeEEEEEEEEcCCCCEEEEe
Confidence 788999999999887654 1 1 3589999999889999999999876655544
No 21
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=93.10 E-value=0.86 Score=42.48 Aligned_cols=53 Identities=17% Similarity=0.004 Sum_probs=41.2
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEEe
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 73 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~s 73 (363)
||.+..|.+|+.++.++... . -..++||++++.++|+.+++..|+..|++...
T Consensus 161 Gv~~v~~~~el~~a~~~~~~-----~-----~~~~lvEe~i~~G~E~~v~vl~~~~~~~~~i~ 213 (317)
T 4eg0_A 161 AVLKVKTADALPAALSEAAT-----H-----DKIVIVEKSIEGGGEYTACIAGDLDLPLIKIV 213 (317)
T ss_dssp CCEEECSGGGHHHHHHHHTT-----T-----CSEEEEEECCCSSEEEEEEEETTCCCCCEEEE
T ss_pred CEEEECCHHHHHHHHHHHHh-----C-----CCeEEEEcCCCCCcEEEEEEECCcccceEEEe
Confidence 56778899998888776532 1 24799999998789999999988777766554
No 22
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=92.33 E-value=0.54 Score=46.18 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=45.8
Q ss_pred CeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEEe
Q 017966 10 GLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 73 (363)
Q Consensus 10 GGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~s 73 (363)
-||.+..|++|+.++++++........+ -..++||++++..+|+.+.+..|..+.++.++
T Consensus 170 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~d~~g~~~~~~ 229 (446)
T 3ouz_A 170 RGMRVVENEKDLEKAYWSAESEAMTAFG----DGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVG 229 (446)
T ss_dssp CSEEEECSGGGHHHHHHHHHHHHHHHHS----CCCEEEEECCSSCEEEEEEEEECTTSCEEEEE
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHhcC----CCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEe
Confidence 3688899999999988877654321111 24699999999889999999999887776665
No 23
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=91.23 E-value=0.61 Score=45.43 Aligned_cols=45 Identities=9% Similarity=-0.015 Sum_probs=36.9
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCC
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 67 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~ 67 (363)
||.+..|++|+.++++.+- . ..++||++++.+.|+.+.+.+|+.+
T Consensus 176 Gv~~v~~~~el~~a~~~~~-------~-----~~~lvEe~i~~~~E~sv~v~~~~~g 220 (403)
T 3k5i_A 176 GNFRVNSQDDIPEALEALK-------D-----RPLYAEKWAYFKMELAVIVVKTKDE 220 (403)
T ss_dssp TEEEECSTTSHHHHHHHTT-------T-----SCEEEEECCCEEEEEEEEEEECSSC
T ss_pred CEEEECCHHHHHHHHHhcC-------C-----CcEEEecCCCCCeEEEEEEEEcCCC
Confidence 7888899999888876541 1 3589999999889999999999866
No 24
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=90.25 E-value=1.8 Score=43.99 Aligned_cols=54 Identities=7% Similarity=0.073 Sum_probs=42.6
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEE
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 72 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~ 72 (363)
||.++.|++|+.++++++..... -..++||++++.++|+.+.+..|..+.++.+
T Consensus 249 Gv~~v~~~~el~~a~~~~~~~~~--------~~~vlvEe~i~g~~e~sv~vl~d~~G~vv~l 302 (554)
T 1w96_A 249 GIRQVEREEDFIALYHQAANEIP--------GSPIFIMKLAGRARHLEVQLLADQYGTNISL 302 (554)
T ss_dssp TEEEECSHHHHHHHHHHHHHHST--------TCCEEEEECCCSCEEEEEEEEECTTSCEEEE
T ss_pred eEEEECCHHHHHHHHHHHHhhcc--------CCCEEEEEecCCCcEEEEEEEEcCCCCEEEE
Confidence 78888999999998887754221 1469999999988999999999987666544
No 25
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=89.82 E-value=1.6 Score=48.04 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=43.3
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEEe
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 73 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~s 73 (363)
||.++.|.+|+.+++++.+... ....+|||++++..+|+.+.+.+|..+.++.+.
T Consensus 178 Gv~iv~~~eel~~~~~~~~~~~--------~~~~vlvEe~I~G~~E~~v~v~~d~~g~~v~~~ 232 (1073)
T 1a9x_A 178 GGGIAYNREEFEEICARGLDLS--------PTKELLIDESLIGWKEYEMEVVRDKNDNCIIVC 232 (1073)
T ss_dssp TCEEESSHHHHHHHHHHHHHHC--------TTSCEEEEECCTTSEEEEEEEEECTTCCEEEEE
T ss_pred ceEEeCCHHHHHHHHHHHHhhC--------CCCcEEEEEccCCCeEEEEEEEEeCCCCEEEEE
Confidence 6778899999999888765421 134799999999778999999999887765543
No 26
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=89.30 E-value=3.2 Score=40.15 Aligned_cols=50 Identities=14% Similarity=0.003 Sum_probs=38.2
Q ss_pred CeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeE
Q 017966 10 GLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTI 70 (363)
Q Consensus 10 GGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~i 70 (363)
-||.++.|.+|+.++.++.+. + -..+|||++++ ++|+.+++..|+..+++
T Consensus 212 ~Gv~~v~~~~el~~a~~~a~~-----~-----~~~vlVEe~I~-G~E~~v~vl~~~~~~~~ 261 (386)
T 3e5n_A 212 VGVSQVRTADAFAAALALALA-----Y-----DHKVLVEAAVA-GREIECAVLGNAVPHAS 261 (386)
T ss_dssp TTCEEECSGGGHHHHHHHHTT-----T-----CSEEEEEECCC-SEEEEEEEECSSSCEEE
T ss_pred CCEEEECCHHHHHHHHHHHHh-----C-----CCcEEEEcCCC-CeEEEEEEEeCCCceEE
Confidence 367788999999888877642 1 14699999998 59999999988763333
No 27
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.72 E-value=0.17 Score=39.13 Aligned_cols=47 Identities=6% Similarity=-0.024 Sum_probs=34.2
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEE
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSI 61 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi 61 (363)
||.+..|.+++.+++++++..... ..+ -..++||++++..+|+.+++
T Consensus 60 gv~~v~~~~el~~~~~~~~~~~~~-~~~---~~~~lvee~i~g~~E~~v~v 106 (108)
T 2cqy_A 60 GMRIAWDDEETRDGFRLSSQEAAS-SFG---DDRLLIEKFIDNPRHISGPS 106 (108)
T ss_dssp TCEEESSHHHHHHHHHHHHHHHHH-HTS---SCCEEEEECCSSSSCCCSCC
T ss_pred cEEEeCCHHHHHHHHHHHHHHHHh-hcC---CCcEEEeeccCCCcEEEEEe
Confidence 788889999999998888653221 111 25799999998777887654
No 28
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=87.92 E-value=0.76 Score=48.22 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=20.0
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEEe
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 73 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~s 73 (363)
||+++.|++|+.++++++....... ..-..++||++++..+|+.+.+..|..+.++.++
T Consensus 167 Gv~iv~~~~el~~a~~~~~~ea~~~----fg~~~vlvEe~I~g~rei~V~v~~d~~G~vv~l~ 225 (681)
T 3n6r_A 167 GMRIAWNDQEAREGFQSSKNEAANS----FGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLG 225 (681)
T ss_dssp ----------------------------------------CCSCEEEEEEEECCSSSCCEEEE
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHh----CCCCcEEEEeccCCCcEEEEEEEEeCCCCEEEEe
Confidence 6788889999888877765433310 1125799999999889999999999988777665
No 29
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=87.62 E-value=0.47 Score=50.38 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=50.4
Q ss_pred ccccCccCeEEeeC---CHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeE-----EEec
Q 017966 3 FGKRGKSGLVALNL---DLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTI-----SFSE 74 (363)
Q Consensus 3 ~GgRGKaGGV~l~~---~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~i-----i~s~ 74 (363)
.|+.|| ||.++. |.+++.++++.++. . ...|+||++++ +.|+.+.+..|+..+++ .+++
T Consensus 529 ~G~~G~--GV~iv~~~~s~eel~~a~~~~~~-----~-----~~~vlVEefI~-G~E~~v~Vvgg~vvaa~~r~p~~v~G 595 (750)
T 3ln6_A 529 STNFGL--GISIFKTSANLASYEKAIDIAFT-----E-----DSAILVEEYIE-GTEYRFFVLEGDCIAVLLRVAANVVG 595 (750)
T ss_dssp TCCSSS--SCEEESSCCCHHHHHHHHHHHHH-----H-----CSEEEEEECCC-SEEEEEEEETTEEEEEEEEECCEEEC
T ss_pred CCCCCC--CEEEEeCCCCHHHHHHHHHHHHh-----h-----CCcEEEEeccC-CCEEEEEEECCEEEEEEEEecceEec
Confidence 466666 788875 99999999887752 1 24799999998 68999999877653321 2344
Q ss_pred cCCCccccc
Q 017966 75 CGGIEIEEN 83 (363)
Q Consensus 75 ~GGv~vE~~ 83 (363)
-|+..|+++
T Consensus 596 dG~~tI~eL 604 (750)
T 3ln6_A 596 DGIHTISQL 604 (750)
T ss_dssp CTTCCHHHH
T ss_pred CCccCHHHH
Confidence 899999875
No 30
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=87.30 E-value=2.2 Score=40.62 Aligned_cols=51 Identities=24% Similarity=0.027 Sum_probs=39.2
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCC
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 67 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~ 67 (363)
||.+..|.+|+.+++++++.... + .-..++||++++.+.|+-+.+..|..+
T Consensus 163 Gv~~v~~~~el~~~~~~~~~~~~---~---~~~~~lvEe~i~~g~E~sv~~~~~~~g 213 (391)
T 1kjq_A 163 GQTFIRSAEQLAQAWKYAQQGGR---A---GAGRVIVEGVVKFDFEITLLTVSAVDG 213 (391)
T ss_dssp CCEEECSGGGHHHHHHHHHHHSG---G---GCCCEEEEECCCCSEEEEEEEEEETTE
T ss_pred CeEEECCHHHHHHHHHHHHhhcc---c---CCCCEEEEEecCCCeEEEEEEEEeCCC
Confidence 67788899999988887764322 0 124699999999889999999988654
No 31
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=86.52 E-value=6.3 Score=37.85 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=36.1
Q ss_pred CeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeC
Q 017966 10 GLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 65 (363)
Q Consensus 10 GGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~ 65 (363)
-||.++.|.+|+.++.++.+. + -..+|||++++ ++|+.+++..|.
T Consensus 194 ~Gv~~v~~~~eL~~a~~~a~~-----~-----~~~vlVEe~I~-G~E~~v~vl~~~ 238 (372)
T 3tqt_A 194 VATLPVKTETEFTKAVKEVFR-----Y-----DDRLMVEPRIR-GREIECAVLGNG 238 (372)
T ss_dssp GGEEEECSHHHHHHHHHHHTT-----T-----CSCEEEEECCC-SEEEEEEEEESS
T ss_pred CCEEEECCHHHHHHHHHHHHh-----c-----CCCEEEECCCC-CEEEEEEEEeCC
Confidence 468888999999888776532 1 13699999998 799999999886
No 32
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=85.86 E-value=0.93 Score=47.50 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=41.3
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEEe
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 73 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~s 73 (363)
||+++.|++|+.++++++....... ..-..++||++++..+|+.+.+..|..+.++.++
T Consensus 193 Gv~iv~~~~el~~a~~~~~~ea~~~----fg~~~vlvEeyI~g~reiev~v~~d~~G~vv~l~ 251 (675)
T 3u9t_A 193 GMKVVEREAELAEALSSAQREAKAA----FGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLN 251 (675)
T ss_dssp -CCCBCCTTTHHHHHSCCCC------------CCCBCCBCCSSCBCEEEEEEECSSSCEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHHHHHHh----cCCCcEEEEeecCCCcEEEEEEEEcCCCCEEEEe
Confidence 6778889999888776554332210 0125799999999889999999999888777664
No 33
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=85.76 E-value=5.8 Score=37.94 Aligned_cols=46 Identities=9% Similarity=0.074 Sum_probs=36.3
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCC
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 66 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~ 66 (363)
||.++.|.+|+.++.++.+. + -..++||++++..+|+.+++..|..
T Consensus 189 Gv~~v~~~~el~~a~~~~~~-----~-----~~~vlvEe~I~G~~E~~v~vl~~~~ 234 (377)
T 1ehi_A 189 GISRVTNAEEYTEALSDSFQ-----Y-----DYKVLIEEAVNGARELEVGVIGNDQ 234 (377)
T ss_dssp TEEEECSHHHHHHHHHHHTT-----T-----CSCEEEEECCCCSCEEEEEEEESSS
T ss_pred CEEEeCCHHHHHHHHHHHHh-----c-----CCcEEEEcCCCCCceEEEEEEcCCC
Confidence 68888999999988777542 1 1369999999855899999998864
No 34
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=85.31 E-value=14 Score=35.02 Aligned_cols=46 Identities=15% Similarity=-0.031 Sum_probs=37.0
Q ss_pred CeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCC
Q 017966 10 GLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 66 (363)
Q Consensus 10 GGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~ 66 (363)
-||.++.|.+|+.++.++.+. + -..++||++++. +|+.+++..|..
T Consensus 193 ~Gv~~v~~~~el~~a~~~a~~-----~-----~~~vlVEe~I~G-~E~~v~vl~~~~ 238 (364)
T 3i12_A 193 VGVSKVANEAQYQQAVALAFE-----F-----DHKVVVEQGIKG-REIECAVLGNDN 238 (364)
T ss_dssp TTCEEESSHHHHHHHHHHHHH-----H-----CSEEEEEECCCS-EEEEEEEEESSS
T ss_pred cCeEEeCCHHHHHHHHHHHHh-----c-----CCcEEEEcCcCC-eEEEEEEEeCCC
Confidence 477888999999988877642 1 146999999985 999999998875
No 35
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=85.18 E-value=2.4 Score=41.02 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=34.6
Q ss_pred CeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeC
Q 017966 10 GLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 65 (363)
Q Consensus 10 GGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~ 65 (363)
-||.++.|.+|+.++.++.+. + -..++||++++ ++|+-+++..|.
T Consensus 215 ~GV~~v~~~~el~~al~~a~~-----~-----~~~vlVEe~I~-G~E~~v~vl~d~ 259 (383)
T 3k3p_A 215 VGISKAENRTDLKQAIALALK-----Y-----DSRVLIEQGVD-AREIEVGILGNT 259 (383)
T ss_dssp --CEEESSHHHHHHHHHHHHH-----H-----CSEEEEEECCC-SEEEEEEEEESS
T ss_pred CCEEEECCHHHHHHHHHHHHh-----C-----CCeEEEEcCCC-CeEEEEEEEeCC
Confidence 367788999999888776542 1 14799999998 799999999874
No 36
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=85.14 E-value=11 Score=35.40 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=36.4
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCC
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 66 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~ 66 (363)
||.++.+.+|+.++.++.+.. -..++||++++ ++|+.+++..|..
T Consensus 180 Gv~~v~~~~el~~a~~~~~~~----------~~~vlvEe~I~-G~E~~v~vl~~~~ 224 (346)
T 3se7_A 180 GVSKVAREEDLQGAVEAAREY----------DSKVLIEEAVI-GTEIGCAVMGNGP 224 (346)
T ss_dssp TCEEECSHHHHHHHHHHHTTT----------CSEEEEEECCC-SEEEEEEEEEETT
T ss_pred CEEEECCHHHHHHHHHHHHhC----------CCcEEEEeCcC-CEEEEEEEEecCC
Confidence 577889999999888776431 14799999998 7999999999964
No 37
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=85.11 E-value=4.4 Score=34.25 Aligned_cols=111 Identities=23% Similarity=0.219 Sum_probs=66.7
Q ss_pred cHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHH
Q 017966 220 GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALR 299 (363)
Q Consensus 220 G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~ 299 (363)
|+-+ ...++...| -+-+++|.+.+++.+.++++ ..+.+.|.+-. ..+...+.. ..+++.++
T Consensus 34 G~~~-va~~l~~~G-----~eVi~lG~~~p~e~lv~aa~--------~~~~diV~lS~--~~~~~~~~~---~~~i~~L~ 94 (161)
T 2yxb_A 34 GAKV-VARALRDAG-----FEVVYTGLRQTPEQVAMAAV--------QEDVDVIGVSI--LNGAHLHLM---KRLMAKLR 94 (161)
T ss_dssp HHHH-HHHHHHHTT-----CEEECCCSBCCHHHHHHHHH--------HTTCSEEEEEE--SSSCHHHHH---HHHHHHHH
T ss_pred HHHH-HHHHHHHCC-----CEEEECCCCCCHHHHHHHHH--------hcCCCEEEEEe--echhhHHHH---HHHHHHHH
Confidence 4444 346666653 35578899999998777632 23445455433 223333333 77778887
Q ss_pred HhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 300 EKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 300 ~~~~~~~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
+.+. ...| +.+||.-..+-...+++ .|+. .+|++.+++++++..+.++.+
T Consensus 95 ~~g~----~~i~--v~vGG~~~~~~~~~l~~----~G~d-~v~~~~~~~~~~~~~~~~~~~ 144 (161)
T 2yxb_A 95 ELGA----DDIP--VVLGGTIPIPDLEPLRS----LGIR-EIFLPGTSLGEIIEKVRKLAE 144 (161)
T ss_dssp HTTC----TTSC--EEEEECCCHHHHHHHHH----TTCC-EEECTTCCHHHHHHHHHHHHH
T ss_pred hcCC----CCCE--EEEeCCCchhcHHHHHH----CCCc-EEECCCCCHHHHHHHHHHHHH
Confidence 7531 1344 44567655554455665 7886 456656778899988877654
No 38
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=83.98 E-value=3 Score=40.46 Aligned_cols=52 Identities=13% Similarity=0.001 Sum_probs=34.5
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeC--CCC
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR--LGC 68 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~--~~p 68 (363)
||.+..|.+|+.+++++++.... ..-..++||++++.+.|+.+.+..|. .+.
T Consensus 171 Gv~~v~~~~el~~~~~~~~~~~~------~~~~~~lvEe~i~~g~E~sv~~~~~~~~~G~ 224 (433)
T 2dwc_A 171 GSYFVKGPEDIPKAWEEAKTKAR------GSAEKIIVEEHIDFDVEVTELAVRHFDENGE 224 (433)
T ss_dssp --EEECSGGGHHHHHHC---------------CCEEEEECCCCSEEEEECCEEEECTTSC
T ss_pred CeEEECCHHHHHHHHHHHHhhcc------cCCCCEEEEccCCCCeeEEEEEEecccCCCC
Confidence 67788899999888776654321 01246999999987899999998886 554
No 39
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=83.35 E-value=2 Score=48.06 Aligned_cols=59 Identities=10% Similarity=0.040 Sum_probs=17.8
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEEe
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 73 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~s 73 (363)
||.++.|.+|+.++++++...... . ..-..++||++++..+|+.+.+..|..+.++.++
T Consensus 195 GV~iv~s~eEL~~a~~~~~~~a~~-~---~~~~~vlVEeyI~G~rEisV~vl~Dg~g~vv~l~ 253 (1236)
T 3va7_A 195 GLQKVDSEDDIERVFETVQHQGKS-Y---FGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIG 253 (1236)
T ss_dssp ------------------------------------------CCEEEEEEEEEESSSCEEEEE
T ss_pred CEEEECCHHHHHHHHHHHHHHHHh-c---cCCCcEEEeeccCCCeEEEEEEEecCCceEEEEe
Confidence 577788999998888777543221 0 1125699999999889999999999887776665
No 40
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=82.70 E-value=1.9 Score=48.08 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=20.6
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEE
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 72 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~ 72 (363)
||.++.|++|+.+++++++...... ..-..++||++++.++|+.+.+..|..+.++.+
T Consensus 186 Gv~iv~s~eEL~~a~~~~~~~a~~~----fg~~~vlVEefI~gg~EisV~vl~D~~G~vv~l 243 (1165)
T 2qf7_A 186 GMRVIRSEADLAKEVTEAKREAMAA----FGKDEVYLEKLVERARHVESQILGDTHGNVVHL 243 (1165)
T ss_dssp --------------------------------------CCCSSEEEEEEEEEECTTSCEEEE
T ss_pred CEEEECCHHHHHHHHHHHHHHHHhh----cCCCcEEEEEeccCCcEEEEEEEEcCCCcEEEE
Confidence 5778889999988887765432210 012569999999988999999999988766644
No 41
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=82.22 E-value=7.3 Score=42.88 Aligned_cols=49 Identities=10% Similarity=0.180 Sum_probs=35.2
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCC
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 67 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~ 67 (363)
||.++.|.+++.++.++.+.. ..-..++||++++..+|+.+.+..|...
T Consensus 724 Gv~iv~~~~el~~~~~~a~~~--------~~~~~vlvEefI~g~~E~~V~~l~d~~~ 772 (1073)
T 1a9x_A 724 AMEIVYDEADLRRYFQTAVSV--------SNDAPVLLDHFLDDAVEVDVDAICDGEM 772 (1073)
T ss_dssp CEEEECSHHHHHHHHHHCC----------------EEEBCCTTCEEEEEEEEECSSC
T ss_pred CeEEECCHHHHHHHHHHHHhh--------CCCCcEEEEEccCCCcEEEEEEEEECCe
Confidence 688889999999887765421 1124699999999878999999998753
No 42
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=81.96 E-value=17 Score=34.58 Aligned_cols=50 Identities=22% Similarity=0.128 Sum_probs=38.9
Q ss_pred CeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEE
Q 017966 10 GLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTIS 71 (363)
Q Consensus 10 GGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii 71 (363)
-||.+..|.+|+.++++.+. -..++||++++...|+.+.+.+|..+.+..
T Consensus 162 ~Gv~~v~~~~el~~~~~~~~------------~~~~lvEe~i~g~~E~~v~~~~~~~G~~~~ 211 (389)
T 3q2o_A 162 KGQVVLRSEADVDEARKLAN------------AAECILEKWVPFEKEVSVIVIRSVSGETKV 211 (389)
T ss_dssp CCEEEESSGGGHHHHHHHHH------------HSCEEEEECCCCSEEEEEEEEECTTCCEEE
T ss_pred CCeEEECCHHHHHHHHHhcC------------CCCEEEEecccCceEEEEEEEEcCCCCEEE
Confidence 36888889999888776542 135899999998799999999997665443
No 43
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=80.65 E-value=6.9 Score=35.70 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=35.6
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCe
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCT 69 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ 69 (363)
||.+..|.+++.++.++++.. -..++||++++ +.|+.+.+..+...|+
T Consensus 148 Gv~~v~~~~el~~~~~~~~~~----------~~~~lvee~i~-G~e~~v~v~~g~~~~~ 195 (307)
T 3r5x_A 148 GVKIVYDKDELISMLETVFEW----------DSEVVIEKYIK-GEEITCSIFDGKQLPI 195 (307)
T ss_dssp CCEEECSHHHHHHHHHHHHHH----------CSEEEEEECCC-SEEEEEEEETTEECCC
T ss_pred CEEEeCCHHHHHHHHHHHHhc----------CCCEEEECCcC-CEEEEEEEECCEEeeE
Confidence 677889999999888776431 14799999998 6999999853332443
No 44
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=80.44 E-value=2.1 Score=47.59 Aligned_cols=59 Identities=5% Similarity=0.095 Sum_probs=41.1
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEEe
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 73 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~s 73 (363)
||+++.|++|+.+++++........ ..-..++||++++..+|+.+.+..|..+.++.++
T Consensus 170 Gv~vv~s~eeL~~a~~~a~~~a~~~----fg~~~vlVEeyI~G~reieV~vl~d~~G~vv~l~ 228 (1150)
T 3hbl_A 170 GMRIVREESELEDAFHRAKSEAEKS----FGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLF 228 (1150)
T ss_dssp --CEECCSSSCTHHHHSSSSSCC----------CBEEECCCSSCEEEEEEEEECSSSCEEEEE
T ss_pred CEEEECCHHHHHHHHHHHHHHHHhh----cCCCcEEEEEccCCCcEEEEEEEEeCCCCEEEEE
Confidence 5777889998888877665432210 1135799999999889999999999988877554
No 45
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=78.71 E-value=19 Score=33.36 Aligned_cols=110 Identities=11% Similarity=0.088 Sum_probs=73.3
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 017966 239 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 318 (363)
Q Consensus 239 aN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G 318 (363)
--|.+ -|..+.+.+.+-++.++ +.++++++++-.+|=...-...+ -..++++..+... .++||++-.|+
T Consensus 10 vTPf~-dg~iD~~~l~~lv~~li-----~~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~ 78 (294)
T 2ehh_A 10 ITPFK-EGEVDYEALGNLIEFHV-----DNGTDAILVCGTTGESPTLTFEE-HEKVIEFAVKRAA----GRIKVIAGTGG 78 (294)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHH-----TTTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEECCC
T ss_pred ecCcC-CCCcCHHHHHHHHHHHH-----HCCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCC
Confidence 35677 89999999999999988 46899998876433322222111 1345555554432 26899999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 319 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 319 ~~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
++..++.+..+.+ +++|. |-++| -.|.++.++.+-.++.+.
T Consensus 79 ~~t~~ai~la~~A-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a~ 125 (294)
T 2ehh_A 79 NATHEAVHLTAHA-KEVGADGALVVVPYYN--KPTQRGLYEHFKTVAQEV 125 (294)
T ss_dssp SCHHHHHHHHHHH-HHTTCSEEEEECCCSS--CCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhc
Confidence 9999998877643 23552 22322 358888888888887653
No 46
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=77.51 E-value=19 Score=33.23 Aligned_cols=110 Identities=10% Similarity=0.037 Sum_probs=73.6
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 017966 239 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 318 (363)
Q Consensus 239 aN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G 318 (363)
--|.+ -|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .+.||++-.|+
T Consensus 10 vTPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~ 78 (289)
T 2yxg_A 10 ITPFK-NKEVDFDGLEENINFLIE-----NGVSGIVAVGTTGESPTLSHEE-HKKVIEKVVDVVN----GRVQVIAGAGS 78 (289)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEECCC
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHH-----CCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 35777 899999999999999885 6899998877444333222221 1345555544432 26899999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 319 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 319 ~~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
++..++.+..+.+ +++|. |-++| -.|.++.++.+-.++.+.
T Consensus 79 ~~t~~ai~la~~a-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~ia~a~ 125 (289)
T 2yxg_A 79 NCTEEAIELSVFA-EDVGADAVLSITPYYN--KPTQEGLRKHFGKVAESI 125 (289)
T ss_dssp SSHHHHHHHHHHH-HHHTCSEEEEECCCSS--CCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhc
Confidence 9999998777643 23452 22322 357888888888887653
No 47
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=77.49 E-value=21 Score=33.32 Aligned_cols=111 Identities=12% Similarity=0.043 Sum_probs=75.3
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 017966 239 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 318 (363)
Q Consensus 239 aN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G 318 (363)
--|.+=.|..+.+.+.+-++.+++ .++++++++-..|=...-...+ -..++++..+... .++||++-.|+
T Consensus 24 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~gi~v~GttGE~~~Lt~~E-r~~v~~~~~~~~~----grvpviaGvg~ 93 (304)
T 3l21_A 24 VTPFSGDGSLDTATAARLANHLVD-----QGCDGLVVSGTTGESPTTTDGE-KIELLRAVLEAVG----DRARVIAGAGT 93 (304)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TTSEEEEECCC
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEeCCC
Confidence 467777789999999999999885 6899999887444332222221 1345555555432 36899999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 319 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 319 ~~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
++..++.+..+.+ ++.|. |-++| -.|.++.++.+-.++.+.
T Consensus 94 ~~t~~ai~la~~a-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a~ 140 (304)
T 3l21_A 94 YDTAHSIRLAKAC-AAEGAHGLLVVTPYYS--KPPQRGLQAHFTAVADAT 140 (304)
T ss_dssp SCHHHHHHHHHHH-HHHTCSEEEEECCCSS--CCCHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHH-HHcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhc
Confidence 9999998887653 23453 22333 357888888888877653
No 48
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=77.40 E-value=17 Score=34.23 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=74.1
Q ss_pred Cceee-ccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeC
Q 017966 239 GNYAE-YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRG 317 (363)
Q Consensus 239 aN~lD-~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~ 317 (363)
--|.| =-|..+.+.+.+-++.++ +.++++++++-.+|=...-...+ -..++++..+... .++||++-.|
T Consensus 19 vTPf~~~dg~iD~~~l~~lv~~li-----~~Gv~gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg 88 (318)
T 3qfe_A 19 VTFFDSKTDTLDLASQERYYAYLA-----RSGLTGLVILGTNAEAFLLTREE-RAQLIATARKAVG----PDFPIMAGVG 88 (318)
T ss_dssp CCCEETTTTEECHHHHHHHHHHHH-----TTTCSEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHC----TTSCEEEECC
T ss_pred eCCccCCCCCCCHHHHHHHHHHHH-----HcCCCEEEeCccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCC
Confidence 35666 678899999999999988 46899999887544322222221 1345555554432 3689999999
Q ss_pred CCCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 318 GPNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 318 G~~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
+++..++.+..+.+. +.|. |-++|..-.+.++.++.+-.++.+.
T Consensus 89 ~~~t~~ai~la~~a~-~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a~ 138 (318)
T 3qfe_A 89 AHSTRQVLEHINDAS-VAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQS 138 (318)
T ss_dssp CSSHHHHHHHHHHHH-HHTCSEEEECCCCC---CCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHH-HcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhhC
Confidence 999999988876532 3452 2223321246788888888887753
No 49
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=77.21 E-value=3 Score=39.48 Aligned_cols=52 Identities=27% Similarity=0.210 Sum_probs=39.9
Q ss_pred CeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEEe
Q 017966 10 GLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 73 (363)
Q Consensus 10 GGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~s 73 (363)
.||.+..|.+|+.++++++- -..++||++++.+.|+.+.+..|+.+.++.++
T Consensus 146 ~Gv~~v~~~~el~~~~~~~~------------~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~ 197 (369)
T 3aw8_A 146 KGQALVRTEEEALEALKALG------------GRGLILEGFVPFDREVSLLAVRGRTGEVAFYP 197 (369)
T ss_dssp --EEEECSHHHHHHHHTTTC------------SSSEEEEECCCCSEEEEEEEEECTTSCEEECC
T ss_pred ceEEEECCHHHHHHHHHhcC------------CCcEEEEEcCCCCEEEEEEEEECCCCCEEEEC
Confidence 37888999999888766541 14699999999889999999999876665543
No 50
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=75.05 E-value=2 Score=40.58 Aligned_cols=51 Identities=27% Similarity=0.208 Sum_probs=23.8
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEE
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 72 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~ 72 (363)
||.+..|.+|+.++++++++ -..++||++++.+.|+.+.+..|..+.++.+
T Consensus 142 Gv~~v~~~~el~~~~~~~~~-----------~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~ 192 (365)
T 2z04_A 142 GQYRIKKLEDANQVVKNHDK-----------EESFIIEEFVKFEAEISCIGVRDREGKTYFY 192 (365)
T ss_dssp ----------------------------------CEEEECCCCSEEEEEEEEECTTCCEEEC
T ss_pred CeEEECCHHHHHHHHHHhcc-----------CCCEEEEccCCCCEEEEEEEEECCCCCEEEE
Confidence 67788888888887766542 1468999999988999999999987665444
No 51
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=74.73 E-value=28 Score=32.17 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=74.6
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 017966 239 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 318 (363)
Q Consensus 239 aN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G 318 (363)
--|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|+
T Consensus 16 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~ 85 (297)
T 3flu_A 16 ITPMNQDGSIHYEQLRDLIDWHIE-----NGTDGIVAVGTTGESATLSVEE-HTAVIEAVVKHVA----KRVPVIAGTGA 85 (297)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCC
T ss_pred eccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccCcccCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 356666789999999999999885 6899999877444332222221 1345555554432 26899999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 319 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 319 ~~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
++..++.+..+.+ +++|. |-++| -.|.++.++.+-.++.+.
T Consensus 86 ~~t~~ai~la~~a-~~~Gadavlv~~P~y~--~~~~~~l~~~f~~va~a~ 132 (297)
T 3flu_A 86 NNTVEAIALSQAA-EKAGADYTLSVVPYYN--KPSQEGIYQHFKTIAEAT 132 (297)
T ss_dssp SSHHHHHHHHHHH-HHTTCSEEEEECCCSS--CCCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHH-HHcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhC
Confidence 9999998887653 23552 22333 357788888888877654
No 52
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=73.70 E-value=25 Score=32.46 Aligned_cols=110 Identities=12% Similarity=0.123 Sum_probs=73.4
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 017966 240 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 319 (363)
Q Consensus 240 N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~ 319 (363)
-|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|++
T Consensus 11 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~ 80 (291)
T 3tak_A 11 TPMLKDGGVDWKSLEKLVEWHIE-----QGTNSIVAVGTTGEASTLSMEE-HTQVIKEIIRVAN----KRIPIIAGTGAN 80 (291)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----HTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----CCCCEEEECccccccccCCHHH-HHHHHHHHHHHhC----CCCeEEEeCCCC
Confidence 45555688999999999999885 6899998877544332222221 1345555555432 268999999999
Q ss_pred CHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 320 NYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 320 ~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
+..++.+..+.+ ++.|. |-++| -.+.++.++.+-.++.+.
T Consensus 81 ~t~~ai~la~~a-~~~Gadavlv~~P~y~--~~~~~~l~~~f~~ia~a~ 126 (291)
T 3tak_A 81 STREAIELTKAA-KDLGADAALLVTPYYN--KPTQEGLYQHYKAIAEAV 126 (291)
T ss_dssp SHHHHHHHHHHH-HHHTCSEEEEECCCSS--CCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH-HhcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHhc
Confidence 999998877643 23452 22333 357888888888887654
No 53
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=73.61 E-value=25 Score=32.91 Aligned_cols=111 Identities=12% Similarity=0.098 Sum_probs=74.9
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 017966 239 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 318 (363)
Q Consensus 239 aN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G 318 (363)
--|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|+
T Consensus 32 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~v~~~~----grvpViaGvg~ 101 (314)
T 3qze_A 32 VTPFDAQGRLDWDSLAKLVDFHLQ-----EGTNAIVAVGTTGESATLDVEE-HIQVIRRVVDQVK----GRIPVIAGTGA 101 (314)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-----HTCCEEEESSGGGTGGGCCHHH-HHHHHHHHHHHHT----TSSCEEEECCC
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 466766789999999999999885 6899999877444322222221 1345555544432 26899999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 319 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 319 ~~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
++..++.+..+.+ ++.|. |-++| -.+.++.++.+-.++.+.
T Consensus 102 ~st~eai~la~~A-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a~ 148 (314)
T 3qze_A 102 NSTREAVALTEAA-KSGGADACLLVTPYYN--KPTQEGMYQHFRHIAEAV 148 (314)
T ss_dssp SSHHHHHHHHHHH-HHTTCSEEEEECCCSS--CCCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHH-HHcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHhc
Confidence 9999998887653 24553 22222 357788888888887654
No 54
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=73.28 E-value=22 Score=28.32 Aligned_cols=103 Identities=12% Similarity=0.128 Sum_probs=56.9
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhH-HhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 017966 242 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTD-VATTFNGIIRALREKESKLKAARMHIFVRRGGPN 320 (363)
Q Consensus 242 lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~-vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~ 320 (363)
+.+-|.-+.++.....+.+++.+. ..+.+.+++++ +|..-.+. .+ +.+.+..+..+.. . .-+.+.|-+
T Consensus 16 v~l~G~lD~~~a~~l~~~ll~~i~-~~~~~~vIlDl-sgV~~iDs~g~---~~L~~~~~~~~l~----G--~~~~l~Gi~ 84 (123)
T 3zxn_A 16 VAIEETLHDQSVIQFKEELLHNIT-GVAGKGLVIDI-SALEVVDEFVT---RVLIEISRLAELL----G--LPFVLTGIK 84 (123)
T ss_dssp EECCCCC-CHHHHHHHHHHHHHHT-SSCCSEEEEEC-TTCSSCCHHHH---HHHHHHHHHHHHH----T--CCEEEECCC
T ss_pred EEEeEeeCHHHHHHHHHHHHHHHH-hcCCCEEEEEc-CCCCcccHHHH---HHHHHHHHHHHHC----C--CEEEEEcCC
Confidence 446677777777776666666543 34566666665 44443333 33 5666655554421 2 223455655
Q ss_pred HHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 321 YQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 321 ~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
.+-+ +.|.. +|+....+..+.|.++|+..+-+.++
T Consensus 85 p~va-~~l~~----~G~~l~~i~~~~~l~~Al~~l~~~~~ 119 (123)
T 3zxn_A 85 PAVA-ITLTE----MGLDLRGMATALNLQKGLDKLKNLAR 119 (123)
T ss_dssp HHHH-HHHHH----TTCCSTTSEEESSHHHHHHHHHHHHT
T ss_pred HHHH-HHHHH----hCCCccceEEECCHHHHHHHHHHhhh
Confidence 4444 55554 45431111126899999999877665
No 55
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=72.68 E-value=25 Score=32.77 Aligned_cols=110 Identities=13% Similarity=0.087 Sum_probs=73.7
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 017966 239 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 318 (363)
Q Consensus 239 aN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G 318 (363)
--|.+ -|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|+
T Consensus 22 vTPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~vi~~~~~~~~----grvpViaGvg~ 90 (306)
T 1o5k_A 22 VTPFK-NGELDLESYERLVRYQLE-----NGVNALIVLGTTGESPTVNEDE-REKLVSRTLEIVD----GKIPVIVGAGT 90 (306)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHH-----TTCCEEEESSGGGTGGGCCHHH-HHHHHHHHHHHHT----TSSCEEEECCC
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEcCCC
Confidence 46788 899999999999999885 5899988877433322222111 1345555554432 26899999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 319 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 319 ~~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
++..++.+..+.+ +++|. |-++| -.|.++.++.+-.++.+.
T Consensus 91 ~st~~ai~la~~A-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a~ 137 (306)
T 1o5k_A 91 NSTEKTLKLVKQA-EKLGANGVLVVTPYYN--KPTQEGLYQHYKYISERT 137 (306)
T ss_dssp SCHHHHHHHHHHH-HHHTCSEEEEECCCSS--CCCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhC
Confidence 9999998877653 23452 22332 357888888888877653
No 56
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=72.46 E-value=20 Score=29.12 Aligned_cols=110 Identities=12% Similarity=0.078 Sum_probs=65.7
Q ss_pred cHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHH
Q 017966 220 GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALR 299 (363)
Q Consensus 220 G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~ 299 (363)
|+-+ ....+...| -+-+|+|.+.+++.+.++++-- ++ +.|.+-. ..+...... ..+++.++
T Consensus 19 G~~~-v~~~l~~~G-----~~Vi~lG~~~p~e~~v~~a~~~------~~--d~v~lS~--~~~~~~~~~---~~~i~~l~ 79 (137)
T 1ccw_A 19 GNKI-LDHAFTNAG-----FNVVNIGVLSPQELFIKAAIET------KA--DAILVSS--LYGQGEIDC---KGLRQKCD 79 (137)
T ss_dssp HHHH-HHHHHHHTT-----CEEEEEEEEECHHHHHHHHHHH------TC--SEEEEEE--CSSTHHHHH---TTHHHHHH
T ss_pred HHHH-HHHHHHHCC-----CEEEECCCCCCHHHHHHHHHhc------CC--CEEEEEe--cCcCcHHHH---HHHHHHHH
Confidence 4443 345666653 3568899999999888774332 44 4444433 223333333 66777787
Q ss_pred HhhhhhhcccceEEEEeCCCC------HHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 017966 300 EKESKLKAARMHIFVRRGGPN------YQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 359 (363)
Q Consensus 300 ~~~~~~~~~~~pvvvrl~G~~------~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~ 359 (363)
+.+. ...+| .+||.- ..+-.+.+++ .|+. .+|++-++..++++...+..
T Consensus 80 ~~g~----~~i~v--~vGG~~~~~~~~~~~~~~~~~~----~G~d-~~~~~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 80 EAGL----EGILL--YVGGNIVVGKQHWPDVEKRFKD----MGYD-RVYAPGTPPEVGIADLKKDL 134 (137)
T ss_dssp HTTC----TTCEE--EEEESCSSSSCCHHHHHHHHHH----TTCS-EECCTTCCHHHHHHHHHHHH
T ss_pred hcCC----CCCEE--EEECCCcCchHhhhhhHHHHHH----CCCC-EEECCCCCHHHHHHHHHHHh
Confidence 7542 23444 455532 2333455665 7885 46667789999998887754
No 57
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=72.42 E-value=26 Score=32.88 Aligned_cols=111 Identities=12% Similarity=0.062 Sum_probs=74.5
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 017966 239 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 318 (363)
Q Consensus 239 aN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G 318 (363)
--|.+=.|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|+
T Consensus 31 vTPf~~dg~iD~~~l~~li~~li~-----~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~v~~~~----grvpViaGvg~ 100 (315)
T 3si9_A 31 ITPFDDNGAIDEKAFCNFVEWQIT-----QGINGVSPVGTTGESPTLTHEE-HKRIIELCVEQVA----KRVPVVAGAGS 100 (315)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-----TTCSEEECSSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCBEEECCC
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccCccccCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 356666789999999999999885 6899998877444333222221 1345555554432 36899999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 319 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 319 ~~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
++..++.+..+.+ ++.|. |-++| -.+.++.++.+-.++.+.
T Consensus 101 ~st~~ai~la~~A-~~~Gadavlv~~P~y~--~~~~~~l~~~f~~va~a~ 147 (315)
T 3si9_A 101 NSTSEAVELAKHA-EKAGADAVLVVTPYYN--RPNQRGLYTHFSSIAKAI 147 (315)
T ss_dssp SSHHHHHHHHHHH-HHTTCSEEEEECCCSS--CCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHcC
Confidence 9999998887653 23552 22223 357888888888887653
No 58
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=72.24 E-value=25 Score=32.97 Aligned_cols=111 Identities=11% Similarity=0.072 Sum_probs=75.6
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 017966 239 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 318 (363)
Q Consensus 239 aN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G 318 (363)
--|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|.
T Consensus 33 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gi~v~GtTGE~~~Ls~~E-r~~v~~~~v~~~~----grvpViaGvg~ 102 (315)
T 3na8_A 33 ITPFAADGGLDLPALGRSIERLID-----GGVHAIAPLGSTGEGAYLSDPE-WDEVVDFTLKTVA----HRVPTIVSVSD 102 (315)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-----TTCSEEECSSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCBEEECCC
T ss_pred eCcCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCC
Confidence 466776789999999999999885 6899999877444332222221 1345555555432 36899999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 319 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 319 ~~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
++..++.+..+.+ ++.|. |-++| -.+.++.++.+-.++.+.
T Consensus 103 ~~t~~ai~la~~A-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a~ 149 (315)
T 3na8_A 103 LTTAKTVRRAQFA-ESLGAEAVMVLPISYW--KLNEAEVFQHYRAVGEAI 149 (315)
T ss_dssp SSHHHHHHHHHHH-HHTTCSEEEECCCCSS--CCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhC
Confidence 9999998887653 24553 22333 357888888888887654
No 59
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=71.47 E-value=21 Score=33.33 Aligned_cols=113 Identities=7% Similarity=-0.007 Sum_probs=74.7
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 017966 239 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 318 (363)
Q Consensus 239 aN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G 318 (363)
--|.+=-|..+.+.+.+-++.++ +.++++++++-.+|=...-...+ -..++++..+... .++||++-.|+
T Consensus 23 vTPf~~dg~iD~~~l~~lv~~li-----~~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~ 92 (307)
T 3s5o_A 23 TTPFTATAEVDYGKLEENLHKLG-----TFPFRGFVVQGSNGEFPFLTSSE-RLEVVSRVRQAMP----KNRLLLAGSGC 92 (307)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHT-----TSCCSEEEESSGGGTGGGSCHHH-HHHHHHHHHHTSC----TTSEEEEECCC
T ss_pred EccCCCCCCcCHHHHHHHHHHHH-----HcCCCEEEECccccchhhCCHHH-HHHHHHHHHHHcC----CCCcEEEecCC
Confidence 36676678999999999988887 46899999887544322222221 1345565555432 36899999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 319 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 319 ~~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
++..++.+..+.+ ++.|. |-++|.+..|.++.++.+-.++.+.
T Consensus 93 ~~t~~ai~la~~A-~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~ 141 (307)
T 3s5o_A 93 ESTQATVEMTVSM-AQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLS 141 (307)
T ss_dssp SSHHHHHHHHHHH-HHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHH-HHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhc
Confidence 9999998877653 23553 2222211147888999888887653
No 60
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=70.57 E-value=36 Score=31.59 Aligned_cols=110 Identities=11% Similarity=0.082 Sum_probs=72.3
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 017966 240 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 319 (363)
Q Consensus 240 N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~ 319 (363)
-|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|++
T Consensus 21 TPF~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~v~~~~~~~~~----grvpViaGvg~~ 90 (303)
T 2wkj_A 21 TPFDQQQALDKASLRRLVQFNIQ-----QGIDGLYVGGSTGEAFVQSLSE-REQVLEIVAEEAK----GKIKLIAHVGCV 90 (303)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TTSEEEEECCCS
T ss_pred cCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECeeccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCC
Confidence 45555688999999999999885 6899998876433322221111 1345555554432 368999999999
Q ss_pred CHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 320 NYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 320 ~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
+-.++.+..+.+ +++|. |-++| -.|.++.++.+-.++.+.
T Consensus 91 ~t~~ai~la~~A-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a~ 136 (303)
T 2wkj_A 91 STAESQQLAASA-KRYGFDAVSAVTPFYY--PFSFEEHCDHYRAIIDSA 136 (303)
T ss_dssp SHHHHHHHHHHH-HHHTCSEEEEECCCSS--CCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhCCCCEEEecCCCCC--CCCHHHHHHHHHHHHHhC
Confidence 999998777643 23452 22333 358888888888877653
No 61
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=70.55 E-value=26 Score=33.70 Aligned_cols=124 Identities=9% Similarity=0.047 Sum_probs=79.7
Q ss_pred HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhh
Q 017966 224 IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKES 303 (363)
Q Consensus 224 ~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~ 303 (363)
++.|-+...|..--+--|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+...
T Consensus 53 ~~~~~~~~~Gi~~alvTPF~~dg~ID~~al~~lv~~li~-----~Gv~Gl~v~GTTGE~~~Ls~eE-r~~vi~~~ve~~~ 126 (360)
T 4dpp_A 53 TNTDDIKALRVITAIKTPYLPDGRFDLEAYDDLVNIQIQ-----NGAEGVIVGGTTGEGQLMSWDE-HIMLIGHTVNCFG 126 (360)
T ss_dssp -CHHHHHTCCEEEECCCCBCTTSSBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT
T ss_pred cChhhcccCCeEEEEeCcCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEecccccChhhCCHHH-HHHHHHHHHHHhC
Confidence 445555553221123577777899999999999999885 6899999877444333222221 1335555444332
Q ss_pred hhhcccceEEEEeCCCCHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 017966 304 KLKAARMHIFVRRGGPNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 361 (363)
Q Consensus 304 ~~~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gi-------p~~~~~~~~~~~eav~~~~~~~~~ 361 (363)
.++||++-.|+++..++.+..+.+ +++|. |. +| -.|.++.++.+-.++.+
T Consensus 127 ----grvpViaGvg~~st~eai~la~~A-~~~Gadavlvv~Py-Y~--k~sq~gl~~hf~~IA~a 183 (360)
T 4dpp_A 127 ----GSIKVIGNTGSNSTREAIHATEQG-FAVGMHAALHINPY-YG--KTSIEGLIAHFQSVLHM 183 (360)
T ss_dssp ----TTSEEEEECCCSSHHHHHHHHHHH-HHTTCSEEEEECCC-SS--CCCHHHHHHHHHTTGGG
T ss_pred ----CCCeEEEecCCCCHHHHHHHHHHH-HHcCCCEEEEcCCC-CC--CCCHHHHHHHHHHHHHh
Confidence 368999999999999998877643 23563 42 22 35788888888777653
No 62
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=69.84 E-value=8.5 Score=37.42 Aligned_cols=59 Identities=10% Similarity=0.170 Sum_probs=43.8
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEEe
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 73 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~s 73 (363)
||.++.|.+|+.+++++++.......+ -..++||++++..+|+.+.+..|..+.++.++
T Consensus 166 Gv~~v~~~~el~~~~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~ 224 (451)
T 1ulz_A 166 GIRICRNEEELVKNYEQASREAEKAFG----RGDLLLEKFIENPKHIEYQVLGDKHGNVIHLG 224 (451)
T ss_dssp SCEEESSHHHHHHHHHHHHHHHHHTTS----CCCEEEEECCCSCEEEEEEEEECTTSCEEEEE
T ss_pred cEEEeCCHHHHHHHHHHHHHHHHHhcC----CCeEEEEEcccCCeEEEEEEEEcCCCCEEEEe
Confidence 788889999999888877643211011 14799999999778999999999877665444
No 63
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=69.62 E-value=49 Score=30.60 Aligned_cols=110 Identities=11% Similarity=0.089 Sum_probs=72.5
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 017966 240 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 319 (363)
Q Consensus 240 N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~ 319 (363)
-|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|++
T Consensus 22 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~v~~~~~~~~~----grvpViaGvg~~ 91 (301)
T 1xky_A 22 TPFDINGNIDFAKTTKLVNYLID-----NGTTAIVVGGTTGESPTLTSEE-KVALYRHVVSVVD----KRVPVIAGTGSN 91 (301)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred CcCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCceEEeCCCCC
Confidence 45555688999999999999885 5899998877433322222111 1345555554432 268999999999
Q ss_pred CHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 320 NYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 320 ~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
+-.++.+..+.+ +++|. |-++| -.|.++.++.+-.++.+.
T Consensus 92 ~t~~ai~la~~A-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a~ 137 (301)
T 1xky_A 92 NTHASIDLTKKA-TEVGVDAVMLVAPYYN--KPSQEGMYQHFKAIAEST 137 (301)
T ss_dssp CHHHHHHHHHHH-HHTTCSEEEEECCCSS--CCCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHH-HhcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHhc
Confidence 999998877653 24552 22222 357888888888877653
No 64
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=69.19 E-value=7.2 Score=38.06 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=39.7
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCC
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 66 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~ 66 (363)
||.+..|.+|+.+++++++..... + ..-..++||++++ +.|+.+.+..|..
T Consensus 157 GV~iv~~~~el~~a~~~~~~~~~~--g--~~~~~vlvEe~i~-G~E~sv~~~~dg~ 207 (431)
T 3mjf_A 157 GVIVAMTQEEAETAVNDMLAGNAF--G--DAGHRIVVEEFLD-GEEASFIVMVDGE 207 (431)
T ss_dssp SEEEECSHHHHHHHHHHHHTTHHH--H--CCCCCEEEEECCC-SEEEEEEEEEESS
T ss_pred cEEEeCCHHHHHHHHHHHHhhccc--c--CCCCeEEEEEeeC-CcEEEEEEEEcCC
Confidence 688889999999999998743221 1 1125799999999 6999999999864
No 65
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=69.05 E-value=7.6 Score=37.77 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=43.7
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEEe
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 73 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~s 73 (363)
||.+..|.+|+.+++++++.......+ -..++||++++..+|+-+.+..|..+.++.++
T Consensus 166 Gv~~v~~~~el~~~~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~ 224 (451)
T 2vpq_A 166 GIRVARDEKELETGFRMTEQEAQTAFG----NGGLYMEKFIENFRHIEIQIVGDSYGNVIHLG 224 (451)
T ss_dssp SEEEESSHHHHHHHHHHHHHHHHHHHS----CCCEEEEECCCSEEEEEEEEEECTTSCEEEEE
T ss_pred CEEEeCCHHHHHHHHHHHHHHHHhhcC----CCcEEEEEecCCCeEEEEEEEEcCCCCEEEEe
Confidence 788899999999988877643211001 14699999998778999999999877665444
No 66
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=68.97 E-value=9 Score=34.43 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHhhhccCCCCCeEEEEe--cccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 017966 247 APNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 324 (363)
Q Consensus 247 ~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~--~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~ 324 (363)
..+.+.+.++++-+.+ |+++++|++.+ +||-.. . . +.+-++++..... .++||++.+.|.-...|
T Consensus 28 ~~~~~~l~~~l~~a~~----d~~v~~ivL~~~s~Gg~~~--~-~---~~i~~~l~~~~~~---~~kPVia~v~g~a~~gG 94 (240)
T 3rst_A 28 GYNHRTFLKNLERAKD----DKTVKGIVLKVNSPGGGVY--E-S---AEIHKKLEEIKKE---TKKPIYVSMGSMAASGG 94 (240)
T ss_dssp CCCHHHHHHHHHHHHH----CTTEEEEEEEEEECCBCHH--H-H---HHHHHHHHHHHHH---HCCCEEEEEEEEEETHH
T ss_pred CcCHHHHHHHHHHHHh----CCCcEEEEEEecCCCCCHH--H-H---HHHHHHHHHHHHh---CCCeEEEEECCeehHhH
Confidence 4567888899888877 99999988876 444221 1 1 3344445444310 26899988777544444
Q ss_pred H
Q 017966 325 L 325 (363)
Q Consensus 325 ~ 325 (363)
-
T Consensus 95 ~ 95 (240)
T 3rst_A 95 Y 95 (240)
T ss_dssp H
T ss_pred H
Confidence 3
No 67
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=68.60 E-value=48 Score=30.47 Aligned_cols=111 Identities=16% Similarity=0.104 Sum_probs=73.0
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 017966 240 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 319 (363)
Q Consensus 240 N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~ 319 (363)
-|.+=-|..+.+.+.+-++.+++ +.++++++++-.+|=...-...+ -..++++..+... .++||++-.|++
T Consensus 13 TPf~~dg~iD~~~l~~lv~~li~----~~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 83 (293)
T 1f6k_A 13 VSFNEDGTINEKGLRQIIRHNID----KMKVDGLYVGGSTGENFMLSTEE-KKEIFRIAKDEAK----DQIALIAQVGSV 83 (293)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH----TSCCSEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEECCCS
T ss_pred cCCCCCCCcCHHHHHHHHHHHHh----hCCCcEEEeCccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEecCCC
Confidence 45555688999999999999884 47899999877433322222111 1345555554432 368999999999
Q ss_pred CHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 320 NYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 320 ~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
+..++.+..+.+ +++|. |-++| -.+.++.++.+-.++.+.
T Consensus 84 ~t~~ai~la~~a-~~~Gadavlv~~P~y~--~~~~~~l~~~f~~va~a~ 129 (293)
T 1f6k_A 84 NLKEAVELGKYA-TELGYDCLSAVTPFYY--KFSFPEIKHYYDTIIAET 129 (293)
T ss_dssp CHHHHHHHHHHH-HHHTCSEEEEECCCSS--CCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhC
Confidence 999998877653 23452 22332 357888888888887653
No 68
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=68.59 E-value=47 Score=30.89 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=74.9
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 017966 239 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 318 (363)
Q Consensus 239 aN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G 318 (363)
--|.+=.|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|+
T Consensus 17 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~ 86 (309)
T 3fkr_A 17 PTTFADTGDLDLASQKRAVDFMID-----AGSDGLCILANFSEQFAITDDE-RDVLTRTILEHVA----GRVPVIVTTSH 86 (309)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-----TTCSCEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCC
T ss_pred eCCCCcCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccCcccCCHHH-HHHHHHHHHHHhC----CCCcEEEecCC
Confidence 356666789999999999999885 6899999877444332222221 1345555555432 36999999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecC--CCCCHHHHHHHHHHHhHhc
Q 017966 319 PNYQTGLAKMRALGEELGI------PLEVYG--PEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 319 ~~~~~~~~~l~~~~~~~Gi------p~~~~~--~~~~~~eav~~~~~~~~~~ 362 (363)
++..++.+..+.+ ++.|. |-| |+ .-.|.++.++.+-.++.+.
T Consensus 87 ~~t~~ai~la~~A-~~~Gadavlv~~Py-y~~~~~~s~~~l~~~f~~va~a~ 136 (309)
T 3fkr_A 87 YSTQVCAARSLRA-QQLGAAMVMAMPPY-HGATFRVPEAQIFEFYARVSDAI 136 (309)
T ss_dssp SSHHHHHHHHHHH-HHTTCSEEEECCSC-BTTTBCCCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHH-HHcCCCEEEEcCCC-CccCCCCCHHHHHHHHHHHHHhc
Confidence 9999998877653 34552 222 21 1357889999888887754
No 69
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=68.54 E-value=29 Score=32.40 Aligned_cols=111 Identities=8% Similarity=0.014 Sum_probs=74.7
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 017966 239 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 318 (363)
Q Consensus 239 aN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G 318 (363)
--|.+=.|..+.+.+.+-++.+++ .++++++++-..|=...-...+ -..++++..+... .++||++-.|+
T Consensus 16 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~~----grvpViaGvg~ 85 (311)
T 3h5d_A 16 ITPFHEDGSINFDAIPALIEHLLA-----HHTDGILLAGTTAESPTLTHDE-ELELFAAVQKVVN----GRVPLIAGVGT 85 (311)
T ss_dssp CCCBCTTSSBCTTHHHHHHHHHHH-----TTCCCEEESSTTTTGGGSCHHH-HHHHHHHHHHHSC----SSSCEEEECCC
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 456666788999999999999885 6899999887544322222221 1345565555432 36899999999
Q ss_pred CCHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 319 PNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 319 ~~~~~~~~~l~~~~~~~Gi-------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
++..++.+..+.+. +.|. |-++| -.+.++.++.+-.++.+.
T Consensus 86 ~~t~~ai~la~~A~-~~Ga~davlv~~P~y~--~~s~~~l~~~f~~va~a~ 133 (311)
T 3h5d_A 86 NDTRDSIEFVKEVA-EFGGFAAGLAIVPYYN--KPSQEGMYQHFKAIADAS 133 (311)
T ss_dssp SSHHHHHHHHHHHH-HSCCCSEEEEECCCSS--CCCHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHH-hcCCCcEEEEcCCCCC--CCCHHHHHHHHHHHHHhC
Confidence 99999988876543 3342 22222 357888888888887653
No 70
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=68.49 E-value=55 Score=30.28 Aligned_cols=111 Identities=16% Similarity=0.078 Sum_probs=73.2
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 017966 239 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 318 (363)
Q Consensus 239 aN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G 318 (363)
--|.+=-|..+.+.+.+-++.+++ .++++++++-..|=...-...+ -..++++..+... .++||++-.|+
T Consensus 25 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~ 94 (304)
T 3cpr_A 25 VTPFTESGDIDIAAGREVAAYLVD-----KGLDSLVLAGTTGESPTTTAAE-KLELLKAVREEVG----DRAKLIAGVGT 94 (304)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTTTTSCHHH-HHHHHHHHHHHHT----TTSEEEEECCC
T ss_pred eccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEecCCC
Confidence 355555689999999999999885 5899998877433332222211 1345555554432 36899999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 319 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 319 ~~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
++..++.+..+.+ ++.|. |-++| -.+.++.++.+-.++.+.
T Consensus 95 ~st~~ai~la~~A-~~~Gadavlv~~P~y~--~~~~~~l~~~f~~ia~a~ 141 (304)
T 3cpr_A 95 NNTRTSVELAEAA-ASAGADGLLVVTPYYS--KPSQEGLLAHFGAIAAAT 141 (304)
T ss_dssp SCHHHHHHHHHHH-HHTTCSEEEEECCCSS--CCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhc
Confidence 9999998877653 24552 22222 357888888888877653
No 71
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=67.58 E-value=39 Score=32.04 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=73.3
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 017966 239 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 318 (363)
Q Consensus 239 aN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G 318 (363)
--|.+=-|..+.+.+.+-++.+++ .++++++++-..|=...-...+ -..++++..+... .++||++-.|+
T Consensus 40 vTPF~~dg~ID~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~vi~~~ve~~~----grvpViaGvg~ 109 (343)
T 2v9d_A 40 STIFTADGQLDKPGTAALIDDLIK-----AGVDGLFFLGSGGEFSQLGAEE-RKAIARFAIDHVD----RRVPVLIGTGG 109 (343)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-----TTCSCEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCS
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCC
Confidence 356665689999999999999885 6899998877433322222111 1345555554432 26899999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 319 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 319 ~~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
++..++.+..+.+ +++|. |-++| -.|.++.++.+-.++.+.
T Consensus 110 ~st~eai~la~~A-~~~Gadavlv~~P~Y~--~~s~~~l~~~f~~VA~a~ 156 (343)
T 2v9d_A 110 TNARETIELSQHA-QQAGADGIVVINPYYW--KVSEANLIRYFEQVADSV 156 (343)
T ss_dssp SCHHHHHHHHHHH-HHHTCSEEEEECCSSS--CCCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhc
Confidence 9999998877643 23452 22333 357888888888887653
No 72
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=66.95 E-value=12 Score=36.62 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=39.6
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCC
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 66 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~ 66 (363)
||.+..|.+|+.+++++++..... + ..-..++||++++ +.|+.+.+..|..
T Consensus 173 GV~iv~~~eel~~a~~~~~~~~~~--g--~~~~~vlvEe~i~-G~E~sv~~~~dg~ 223 (442)
T 3lp8_A 173 GTVICHTHEEAYNAVDAMLVHHKF--G--EAGCAIIIEEFLE-GKEISFFTLVDGS 223 (442)
T ss_dssp SEEEESSHHHHHHHHHHHHTSCTT--G--GGGSSEEEEECCC-SEEEEEEEEEESS
T ss_pred eEEEeCCHHHHHHHHHHHHhhccc--C--CCCCeEEEEEeec-CcEEEEEEEECCC
Confidence 688889999999999998753221 1 1125699999999 7999999998864
No 73
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=66.36 E-value=51 Score=30.36 Aligned_cols=111 Identities=10% Similarity=0.037 Sum_probs=73.2
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 017966 240 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 319 (363)
Q Consensus 240 N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~ 319 (363)
-|.+=-|..+.+.+.+-++.+++ .++++++++-..|=...-...+ -..++++..+... .++||++-.|++
T Consensus 13 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~ 82 (294)
T 3b4u_A 13 TPFKTDGTVDIDAMIAHARRCLS-----NGCDSVTLFGTTGEGCSVGSRE-RQAILSSFIAAGI----APSRIVTGVLVD 82 (294)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHTTC----CGGGEEEEECCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCCc
Confidence 45555688999999999999885 5899998877433322222111 1445565555432 368999999999
Q ss_pred CHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 320 NYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 320 ~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
+..++.+..+.+ +++|. |-++|. ..|.++.++.+-.++.+.
T Consensus 83 ~t~~ai~la~~A-~~~Gadavlv~~P~y~~-~~s~~~l~~~f~~va~a~ 129 (294)
T 3b4u_A 83 SIEDAADQSAEA-LNAGARNILLAPPSYFK-NVSDDGLFAWFSAVFSKI 129 (294)
T ss_dssp SHHHHHHHHHHH-HHTTCSEEEECCCCSSC-SCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-HhcCCCEEEEcCCcCCC-CCCHHHHHHHHHHHHHhc
Confidence 999998877653 23552 223321 148888898888887653
No 74
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=65.56 E-value=51 Score=31.04 Aligned_cols=111 Identities=14% Similarity=0.056 Sum_probs=73.8
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 017966 239 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 318 (363)
Q Consensus 239 aN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G 318 (363)
--|.+=-|..+.+.+.+-++.+++ .++++++++-..|=...-...+ -..++++..+... .++||++-.|+
T Consensus 43 vTPF~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~vi~~~ve~~~----grvpViaGvg~ 112 (332)
T 2r8w_A 43 ITPADEAGRVDIEAFSALIARLDA-----AEVDSVGILGSTGIYMYLTREE-RRRAIEAAATILR----GRRTLMAGIGA 112 (332)
T ss_dssp CCCBCTTCCBCHHHHHHHHHHHHH-----HTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEEECC
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCC
Confidence 466666789999999999999885 5899998877433332222111 1345555554432 36999999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 319 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 319 ~~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
++..++.+..+.+ +++|. |-++| -.|.++.++.+-.++.+.
T Consensus 113 ~st~eai~la~~A-~~~Gadavlv~~P~Y~--~~s~~~l~~~f~~VA~a~ 159 (332)
T 2r8w_A 113 LRTDEAVALAKDA-EAAGADALLLAPVSYT--PLTQEEAYHHFAAVAGAT 159 (332)
T ss_dssp SSHHHHHHHHHHH-HHHTCSEEEECCCCSS--CCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhc
Confidence 9999998777643 23452 22332 357888888888887653
No 75
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=65.36 E-value=53 Score=30.15 Aligned_cols=110 Identities=6% Similarity=0.059 Sum_probs=72.7
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 017966 240 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 319 (363)
Q Consensus 240 N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~ 319 (363)
-|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|++
T Consensus 11 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~ 80 (292)
T 2ojp_A 11 TPMDEKGNVCRASLKKLIDYHVA-----SGTSAIVSVGTTGESATLNHDE-HADVVMMTLDLAD----GRIPVIAGTGAN 80 (292)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----HTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred ccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccchhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCc
Confidence 34555688999999999999885 5899988877433332222211 1345555554432 268999999999
Q ss_pred CHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 320 NYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 320 ~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
+..++.+..+.+ +++|. |-++| -.|.++.++.+-.++.+.
T Consensus 81 ~t~~ai~la~~a-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~ia~a~ 126 (292)
T 2ojp_A 81 ATAEAISLTQRF-NDSGIVGCLTVTPYYN--RPSQEGLYQHFKAIAEHT 126 (292)
T ss_dssp SHHHHHHHHHHT-TTSSCSEEEEECCCSS--CCCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhc
Confidence 999998887754 34552 22322 357888888888877653
No 76
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=64.19 E-value=11 Score=36.38 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=39.5
Q ss_pred CeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCC
Q 017966 10 GLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 66 (363)
Q Consensus 10 GGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~ 66 (363)
-||.++.|.+|+.+++++++..... .++ -..++||++++ +.|+.+.+..|..
T Consensus 155 ~Gv~~v~~~~el~~a~~~~~~~~~~-~g~---~~~vlvEe~i~-G~E~sv~~~~dg~ 206 (412)
T 1vkz_A 155 KGVLILDSKEETIEKGSKLIIGELI-KGV---KGPVVIDEFLA-GNELSAMAVVNGR 206 (412)
T ss_dssp CCEEEESSHHHHHHHHHHHHHTSSS-TTC---CSCEEEEECCC-SEEEEEEEEEETT
T ss_pred CCEEEECCHHHHHHHHHHHHhhccc-cCC---CCeEEEEECCc-CcEEEEEEEECCC
Confidence 3788899999999998888753210 121 12799999999 8999999999854
No 77
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=64.10 E-value=11 Score=36.57 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=43.2
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEEe
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 73 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~s 73 (363)
||.++.|.+|+.+++++++.......+ -..++||++++..+|+-+.+..|..+.++.++
T Consensus 168 Gv~~v~~~~el~~~~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~~~~~~~G~~~~~~ 226 (449)
T 2w70_A 168 GMRVVRGDAELAQSISMTRAEAKAAFS----NDMVYMEKYLENPRHVEIQVLADGQGNAIYLA 226 (449)
T ss_dssp TCEEECSHHHHHHHHHHHHHHHHHHHS----CCCEEEEECCSSCEEEEEEEEECTTSCEEEEE
T ss_pred CEEEeCCHHHHHHHHHHHHHHHHhhcC----CCcEEEEeccCCCeEEEEEEEEcCCCCEEEEe
Confidence 678889999999888877643111011 14699999999778999999999877665443
No 78
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=63.33 E-value=10 Score=37.01 Aligned_cols=58 Identities=14% Similarity=0.129 Sum_probs=43.0
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEE
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 72 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~ 72 (363)
||.++.|.+|+.+++++++.......+ -..++||++++..+|+-+.+..|..+.++.+
T Consensus 172 Gv~~v~~~~el~~~~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~ 229 (461)
T 2dzd_A 172 GMRIVRSKSEVKEAFERAKSEAKAAFG----SDEVYVEKLIENPKHIEVQILGDYEGNIVHL 229 (461)
T ss_dssp SEEEECCGGGHHHHHHHHHHHHHHHTS----CCCEEEEECCCSCEEEEEEEEECTTCCEEEE
T ss_pred CEEEeCCHHHHHHHHHHHHHHHHhhcC----CCcEEEEECCCCCeEEEEEEEEcCCCCEEEE
Confidence 688889999999888877653211011 1469999999987899999999987766533
No 79
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=63.33 E-value=51 Score=30.47 Aligned_cols=109 Identities=11% Similarity=0.055 Sum_probs=71.8
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcc-cceEEEEeCC
Q 017966 240 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAA-RMHIFVRRGG 318 (363)
Q Consensus 240 N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~-~~pvvvrl~G 318 (363)
-|. =-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... . ++||++-.|+
T Consensus 18 TPf-~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~~----g~rvpviaGvg~ 86 (301)
T 3m5v_A 18 TPF-KNGKVDEQSYARLIKRQIE-----NGIDAVVPVGTTGESATLTHEE-HRTCIEIAVETCK----GTKVKVLAGAGS 86 (301)
T ss_dssp CCE-ETTEECHHHHHHHHHHHHH-----TTCCEEECSSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEEECCC
T ss_pred cCc-CCCCCCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCCeEEEeCCC
Confidence 344 3678999999999999885 6899998877444322222221 1345555554432 3 5899999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 319 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 319 ~~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
++..++.+..+.+ ++.|. |-++| -.|.++.++.+-.++.+.
T Consensus 87 ~~t~~ai~la~~a-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a~ 133 (301)
T 3m5v_A 87 NATHEAVGLAKFA-KEHGADGILSVAPYYN--KPTQQGLYEHYKAIAQSV 133 (301)
T ss_dssp SSHHHHHHHHHHH-HHTTCSEEEEECCCSS--CCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHH-HHcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHhC
Confidence 9999998887653 23553 22223 357888888888887653
No 80
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=60.56 E-value=6.3 Score=37.65 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=39.7
Q ss_pred CeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEE
Q 017966 10 GLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 72 (363)
Q Consensus 10 GGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~ 72 (363)
-||.+..|++|+.++++.+.. ..++||++++..+|+.+.+.+|..+.+..+
T Consensus 160 ~Gv~~v~~~~el~~a~~~~~~------------~~~ivEe~i~g~~E~sv~~~~~~~g~~~~~ 210 (377)
T 3orq_A 160 KGQVLINNEKDLQEGFKLIET------------SECVAEKYLNIKKEVSLTVTRGNNNQITFF 210 (377)
T ss_dssp TTEEEECSTTSHHHHHHHHTT------------SCEEEEECCCEEEEEEEEEEECGGGCEEEC
T ss_pred CCeEEECCHHHHHHHHHhcCC------------CcEEEEccCCCCEEEEEEEEEeCCCCEEEE
Confidence 468888899998888776532 458999999977999999999876655443
No 81
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=59.21 E-value=48 Score=30.90 Aligned_cols=109 Identities=13% Similarity=-0.012 Sum_probs=71.9
Q ss_pred Cceeec-cCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeC
Q 017966 239 GNYAEY-SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRG 317 (363)
Q Consensus 239 aN~lD~-gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~ 317 (363)
--|.+= -|..+.+.+.+-++.++ +.++++++++-.+|=...-...+ -..++++..+... .++||++-.|
T Consensus 20 vTPf~~~dg~iD~~~l~~lv~~li-----~~Gv~Gl~v~GtTGE~~~Ls~eE-r~~v~~~~v~~~~----grvpViaGvg 89 (316)
T 3e96_A 20 ITPFRKSDGSIDWHHYKETVDRIV-----DNGIDVIVPCGNTSEFYALSLEE-AKEEVRRTVEYVH----GRALVVAGIG 89 (316)
T ss_dssp CCCBCTTTCCBCHHHHHHHHHHHH-----TTTCCEECTTSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEEEC
T ss_pred eCCccCCCCCCCHHHHHHHHHHHH-----HcCCCEEEeCccccCcccCCHHH-HHHHHHHHHHHhC----CCCcEEEEeC
Confidence 466766 78999999999999988 47899988876443322222221 1345555544432 2689999997
Q ss_pred CCCHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 318 GPNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 318 G~~~~~~~~~l~~~~~~~Gi-------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
. +..++.+..+.+ ++.|. |.| + ..|.++.++.+-.++.+.
T Consensus 90 ~-~t~~ai~la~~A-~~~Gadavlv~~P~y-~--~~s~~~l~~~f~~va~a~ 136 (316)
T 3e96_A 90 Y-ATSTAIELGNAA-KAAGADAVMIHMPIH-P--YVTAGGVYAYFRDIIEAL 136 (316)
T ss_dssp S-SHHHHHHHHHHH-HHHTCSEEEECCCCC-S--CCCHHHHHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHH-HhcCCCEEEEcCCCC-C--CCCHHHHHHHHHHHHHhC
Confidence 5 888888776543 23453 443 2 458899999888887653
No 82
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=57.21 E-value=26 Score=32.53 Aligned_cols=111 Identities=12% Similarity=0.065 Sum_probs=73.4
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 017966 239 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 318 (363)
Q Consensus 239 aN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G 318 (363)
--|.+=.|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|+
T Consensus 13 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~ 82 (300)
T 3eb2_A 13 VSPVDAEGRVRADVMGRLCDDLIQ-----AGVHGLTPLGSTGEFAYLGTAQ-REAVVRATIEAAQ----RRVPVVAGVAS 82 (300)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-----TTCSCBBTTSGGGTGGGCCHHH-HHHHHHHHHHHHT----TSSCBEEEEEE
T ss_pred eccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccCccccCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 356666789999999999999885 6889988776444222211111 1345555544432 36899999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 319 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 319 ~~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
++..++.+..+.+. ++|. |-++| -.|.++.++.+-.++.+.
T Consensus 83 ~~t~~ai~la~~a~-~~Gadavlv~~P~y~--~~~~~~l~~~f~~va~a~ 129 (300)
T 3eb2_A 83 TSVADAVAQAKLYE-KLGADGILAILEAYF--PLKDAQIESYFRAIADAV 129 (300)
T ss_dssp SSHHHHHHHHHHHH-HHTCSEEEEEECCSS--CCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHHC
Confidence 99999988776532 3452 22333 358888888888877654
No 83
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=56.69 E-value=77 Score=29.43 Aligned_cols=108 Identities=14% Similarity=0.063 Sum_probs=73.5
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 017966 240 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 319 (363)
Q Consensus 240 N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~ 319 (363)
-|.+=.|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+.. . ++||++-.|++
T Consensus 18 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Lt~~E-r~~v~~~~v~~~-g----rvpViaGvg~~ 86 (313)
T 3dz1_A 18 TPFHDDGKIDDVSIDRLTDFYAE-----VGCEGVTVLGILGEAPKLDAAE-AEAVATRFIKRA-K----SMQVIVGVSAP 86 (313)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCSEEEESTGGGTGGGSCHHH-HHHHHHHHHHHC-T----TSEEEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----CCCCEEEeCccCcChhhCCHHH-HHHHHHHHHHHc-C----CCcEEEecCCC
Confidence 56666689999999999999885 6899998877444322222221 134555554443 1 68999999999
Q ss_pred CHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 320 NYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 320 ~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
+..++.+..+.+ ++.|. |-| | ..|.++.++.+-.++.+.
T Consensus 87 ~t~~ai~la~~A-~~~Gadavlv~~P~-~--~~s~~~l~~~f~~va~a~ 131 (313)
T 3dz1_A 87 GFAAMRRLARLS-MDAGAAGVMIAPPP-S--LRTDEQITTYFRQATEAI 131 (313)
T ss_dssp SHHHHHHHHHHH-HHHTCSEEEECCCT-T--CCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HHcCCCEEEECCCC-C--CCCHHHHHHHHHHHHHhC
Confidence 999998877643 23452 222 2 468889999988888754
No 84
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=56.61 E-value=72 Score=29.26 Aligned_cols=109 Identities=8% Similarity=0.037 Sum_probs=70.8
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 017966 240 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 319 (363)
Q Consensus 240 N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~ 319 (363)
-|.+=. ..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|.+
T Consensus 13 TPf~~d-~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Lt~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 81 (292)
T 3daq_A 13 TPFTNN-KVNLEALKAHVNFLLE-----NNAQAIIVNGTTAESPTLTTDE-KELILKTVIDLVD----KRVPVIAGTGTN 81 (292)
T ss_dssp CCEETT-EECHHHHHHHHHHHHH-----TTCCEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred cCcCCC-CcCHHHHHHHHHHHHH-----cCCCEEEECccccccccCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCcc
Confidence 345444 6788889999888885 6899999887444333222221 1345555555432 368999999999
Q ss_pred CHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 320 NYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 320 ~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
+..++.+..+.+ ++.|. |-++| -.|.++.++.+-.++.+.
T Consensus 82 ~t~~ai~la~~a-~~~Gadavlv~~P~y~--~~~~~~l~~~f~~ia~a~ 127 (292)
T 3daq_A 82 DTEKSIQASIQA-KALGADAIMLITPYYN--KTNQRGLVKHFEAIADAV 127 (292)
T ss_dssp CHHHHHHHHHHH-HHHTCSEEEEECCCSS--CCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-HHcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhC
Confidence 999998877653 23452 22333 357888888888887653
No 85
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=54.76 E-value=71 Score=29.69 Aligned_cols=110 Identities=9% Similarity=-0.079 Sum_probs=71.7
Q ss_pred Ccee-eccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeC
Q 017966 239 GNYA-EYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRG 317 (363)
Q Consensus 239 aN~l-D~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~ 317 (363)
--|. +=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|
T Consensus 20 vTPF~~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~vi~~~~~~~~----grvpViaGvg 89 (314)
T 3d0c_A 20 IVPFLEGTREIDWKGLDDNVEFLLQ-----NGIEVIVPNGNTGEFYALTIEE-AKQVATRVTELVN----GRATVVAGIG 89 (314)
T ss_dssp CCCBCTTTCCBCHHHHHHHHHHHHH-----TTCSEECTTSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEEEC
T ss_pred eccccCCCCCCCHHHHHHHHHHHHH-----cCCCEEEECcccCChhhCCHHH-HHHHHHHHHHHhC----CCCeEEecCC
Confidence 4566 55789999999999999885 6899988765333222111111 1345555554432 3689999999
Q ss_pred CCCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 318 GPNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 318 G~~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
+ +..++.+..+.+ +++|. |-++| -.+.++.++.+-.++.+.
T Consensus 90 ~-st~~ai~la~~A-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a~ 136 (314)
T 3d0c_A 90 Y-SVDTAIELGKSA-IDSGADCVMIHQPVHP--YITDAGAVEYYRNIIEAL 136 (314)
T ss_dssp S-SHHHHHHHHHHH-HHTTCSEEEECCCCCS--CCCHHHHHHHHHHHHHHS
T ss_pred c-CHHHHHHHHHHH-HHcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhC
Confidence 9 989888777643 34552 22333 357888888888887653
No 86
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=53.84 E-value=64 Score=29.56 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=68.3
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 017966 240 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 319 (363)
Q Consensus 240 N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~ 319 (363)
-|.+=-| .+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|++
T Consensus 12 TPf~~dg-iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pvi~Gvg~~ 80 (291)
T 3a5f_A 12 TPFTNTG-VDFDKLSELIEWHIK-----SKTDAIIVCGTTGEATTMTETE-RKETIKFVIDKVN----KRIPVIAGTGSN 80 (291)
T ss_dssp CCBCSSS-BCHHHHHHHHHHHHH-----TTCCEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred cCcCCCC-cCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCcc
Confidence 3444456 999999999999885 6899988877433322222111 1345555554432 268999999999
Q ss_pred CHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHh
Q 017966 320 NYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMS 361 (363)
Q Consensus 320 ~~~~~~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~ 361 (363)
+..++.+..+.+ +++|. |-++| -.|.++.++.+-.++.+
T Consensus 81 ~t~~ai~la~~a-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~ia~a 125 (291)
T 3a5f_A 81 NTAASIAMSKWA-ESIGVDGLLVITPYYN--KTTQKGLVKHFKAVSDA 125 (291)
T ss_dssp SHHHHHHHHHHH-HHTTCSEEEEECCCSS--CCCHHHHHHHC-CTGGG
T ss_pred cHHHHHHHHHHH-HhcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHh
Confidence 999998877643 24552 22322 35778888877776654
No 87
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=52.90 E-value=27 Score=30.53 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=40.7
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCeEE--EEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 017966 242 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRA--LLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 319 (363)
Q Consensus 242 lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vl--v~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~ 319 (363)
+-++|..+........+.+.. ...+++++.|+ ||.|||-.. -+ ..|.++++.. ++||++.++|.
T Consensus 30 i~l~G~I~~~~a~~i~~~L~~-~~~~~~~k~I~l~InSPGG~v~---a~---~~I~~~i~~~-------~~pV~~~v~g~ 95 (208)
T 2cby_A 30 IFLGSEVNDEIANRLCAQILL-LAAEDASKDISLYINSPGGSIS---AG---MAIYDTMVLA-------PCDIATYAMGM 95 (208)
T ss_dssp EEECSCBCHHHHHHHHHHHHH-HHHHCSSSCEEEEEEECCBCHH---HH---HHHHHHHHHC-------SSCEEEEEEEE
T ss_pred EEEcCEECHHHHHHHHHHHHH-HHhCCCCCCEEEEEECCCCCHH---HH---HHHHHHHHhc-------CCCEEEEECcE
Confidence 455666665444443333322 11256666654 444888542 23 6777777765 47888877775
Q ss_pred CHHHHHHHH
Q 017966 320 NYQTGLAKM 328 (363)
Q Consensus 320 ~~~~~~~~l 328 (363)
-+..|-=++
T Consensus 96 AaS~g~~Ia 104 (208)
T 2cby_A 96 AASMGEFLL 104 (208)
T ss_dssp EETHHHHHH
T ss_pred eHHHHHHHH
Confidence 555554444
No 88
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=52.45 E-value=56 Score=30.96 Aligned_cols=28 Identities=25% Similarity=0.099 Sum_probs=23.3
Q ss_pred EEEEeeecCCCceEEEEEEEeCCCCeEE
Q 017966 44 TFIVEPFVPHNQEYYLSIVSDRLGCTIS 71 (363)
Q Consensus 44 gvLVe~~~~~~~E~ylgi~~D~~~p~ii 71 (363)
.++||++++.++|+-+.+.+|..+.+..
T Consensus 149 ~vivEe~I~~~~Eisv~v~~~~~G~~~~ 176 (355)
T 3eth_A 149 ECIVEQGINFSGEVSLVGARGFDGSTVF 176 (355)
T ss_dssp TEEEEECCCCSEEEEEEEEECTTSCEEE
T ss_pred CEEEEEccCCCcEEEEEEEEcCCCCEEE
Confidence 3999999998999999999998765433
No 89
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=52.33 E-value=25 Score=33.68 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=38.8
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCC
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 66 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~ 66 (363)
||.+..|.+|+.+++++++..... + ..-..++||++++ +.|+.+.+..|..
T Consensus 152 Gv~~v~~~~el~~~~~~~~~~~~~--g--~~~~~~lvEe~i~-g~E~sv~~~~dG~ 202 (422)
T 2xcl_A 152 GVTVAMTEEEAIACLHDFLEDEKF--G--DASASVVIEEYLS-GEEFSLMAFVKGE 202 (422)
T ss_dssp CEEEESSHHHHHHHHHHHHTSCTT--G--GGGSSEEEEECCC-SEEEEEEEEEETT
T ss_pred cEEEECCHHHHHHHHHHHHhhhhc--c--CCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence 788899999999998888753211 1 1125699999999 7899999988743
No 90
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=52.30 E-value=68 Score=29.53 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=68.4
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 017966 245 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 324 (363)
Q Consensus 245 gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~ 324 (363)
.|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|+++-.++
T Consensus 15 dg~iD~~~l~~lv~~li~-----~Gv~gi~v~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~~t~~a 84 (297)
T 2rfg_A 15 NGQVDEKALAGLVDWQIK-----HGAHGLVPVGTTGESPTLTEEE-HKRVVALVAEQAQ----GRVPVIAGAGSNNPVEA 84 (297)
T ss_dssp TTEECHHHHHHHHHHHHH-----TTCSEEECSSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCBEEECCCSSHHHH
T ss_pred CCCcCHHHHHHHHHHHHH-----cCCCEEEECccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEccCCCCHHHH
Confidence 578899999999999885 6899988776433222221111 1345555544432 26899999999999999
Q ss_pred HHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 325 LAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 325 ~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
.+..+.+ ++.|. |-++| -.|.++.++.+-.++.+.
T Consensus 85 i~la~~A-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a~ 125 (297)
T 2rfg_A 85 VRYAQHA-QQAGADAVLCVAGYYN--RPSQEGLYQHFKMVHDAI 125 (297)
T ss_dssp HHHHHHH-HHHTCSEEEECCCTTT--CCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-HhcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHhc
Confidence 8777643 23452 22332 357888888888877653
No 91
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=51.62 E-value=67 Score=25.16 Aligned_cols=88 Identities=16% Similarity=0.049 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhhhccCC-CCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHH
Q 017966 249 NEEEVLQYARVVIDCATADP-DGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAK 327 (363)
Q Consensus 249 ~~e~~~~a~~~ll~~~~~~~-~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~~~~ 327 (363)
+.+.+.+.+.-++. .+| ..+.++++ +++++..+..+. ..+.+..++... .+..++ +.|.+ ..-+++
T Consensus 29 ~a~~~~~~l~~~~~---~~~~~~~~vvlD-ls~v~~iDssgl--~~L~~~~~~~~~----~g~~l~--l~~~~-~~v~~~ 95 (130)
T 2kln_A 29 NAEDFRRRALTVVD---QDPGQVEWFVLN-AESNVEVDLTAL--DALDQLRTELLR----RGIVFA--MARVK-QDLRES 95 (130)
T ss_dssp THHHHHHHHHHHTT---SSSSCCEEEEEE-CSCCSSSBCSTT--THHHHHHHHHHT----TTEEEE--EECCS-SHHHHH
T ss_pred hHHHHHHHHHHHHh---cCCCCceEEEEE-CCCCChhhHHHH--HHHHHHHHHHHH----CCCEEE--EEcCC-HHHHHH
Confidence 35556665554443 122 44544444 566666665553 667776666542 233333 44433 245677
Q ss_pred HHhhccccCCce-----eecCCCCCHHHHHHHHH
Q 017966 328 MRALGEELGIPL-----EVYGPEATMTGICKQAI 356 (363)
Q Consensus 328 l~~~~~~~Gip~-----~~~~~~~~~~eav~~~~ 356 (363)
|+. +|+.- .+ +.|.++|+..+-
T Consensus 96 l~~----~gl~~~~~~~~i---~~t~~~Al~~~~ 122 (130)
T 2kln_A 96 LRA----ASLLDKIGEDHI---FMTLPTAVQAFR 122 (130)
T ss_dssp HHH----CTTHHHHCTTEE---ESCHHHHHHHHT
T ss_pred HHH----cCChhhcCccee---ECCHHHHHHHHH
Confidence 764 56521 22 579999997653
No 92
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=50.80 E-value=32 Score=31.81 Aligned_cols=46 Identities=7% Similarity=0.002 Sum_probs=36.3
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCC
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 66 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~ 66 (363)
||.++.|.+|+.++.++.+. + -..++||++++..+|+.+++..|+.
T Consensus 165 Gv~~v~~~~el~~a~~~~~~-----~-----~~~vlvEe~I~G~~E~~v~vl~~~~ 210 (322)
T 2fb9_A 165 GISRVERFQDLEAALALAFR-----Y-----DEKAVVEKALSPVRELEVGVLGNVF 210 (322)
T ss_dssp TCEEESSHHHHHHHHHHHTT-----T-----CSEEEEEECCSSCEEEEEEEESSSS
T ss_pred CEEEECCHHHHHHHHHHHHh-----c-----CCeEEEEeCCCCCeeEEEEEEeCCC
Confidence 78888999999888776642 1 1479999999854899999998764
No 93
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=50.59 E-value=1.6e+02 Score=27.38 Aligned_cols=46 Identities=11% Similarity=-0.023 Sum_probs=35.2
Q ss_pred CeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCC
Q 017966 10 GLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 66 (363)
Q Consensus 10 GGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~ 66 (363)
-||.++.|.++..++.++... . -..++||+.++ ++|+-+++..|..
T Consensus 191 ~Gv~~v~~~~el~~~~~~a~~-----~-----~~~vlvE~~i~-G~e~~v~vl~~~~ 236 (357)
T 4fu0_A 191 FGITKVIEKQELDAAIELAFE-----H-----DTEVIVEETIN-GFEVGCAVLGIDE 236 (357)
T ss_dssp TTCEEESSHHHHHHHHHHHTT-----T-----CSEEEEEECCC-SEEEEEEEEESSS
T ss_pred CceEEeccHHhHHHHHHHHhc-----c-----CCeEEEEEecC-CEEEEEEEEecCC
Confidence 367888999998887765432 1 14699999996 6899999998865
No 94
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=48.36 E-value=26 Score=34.01 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=38.4
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCC
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 66 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~ 66 (363)
||.++.|.+|+.+++++++.... .+ ..-..++||++++ +.|+.+.+..|..
T Consensus 173 Gv~~v~~~~el~~~~~~~~~~~~--~g--~~~~~~lvEe~i~-G~E~sv~~~~dG~ 223 (451)
T 2yrx_A 173 GVTVAQTVEEALAAAKAALVDGQ--FG--TAGSQVVIEEYLE-GEEFSFMAFVNGE 223 (451)
T ss_dssp CEEEESSHHHHHHHHHHHHHHSC--CB--TTBCCEEEEECCC-SEEEEEEEEEETT
T ss_pred cEEEECCHHHHHHHHHHHHhccc--cC--CCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence 78889999999999888765221 11 1135799999999 7899999888743
No 95
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=48.32 E-value=26 Score=33.45 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=36.7
Q ss_pred CeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeC
Q 017966 10 GLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 65 (363)
Q Consensus 10 GGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~ 65 (363)
-||.++.|.+|+.+++++++.... + ..++||++++ +.|+-+.+..|.
T Consensus 150 ~Gv~~v~~~~el~~~~~~~~~~~~------~--~~~lvEe~i~-g~E~sv~~~~~G 196 (417)
T 2ip4_A 150 KGVTVAFDLHQAKQAVANILNRAE------G--GEVVVEEYLE-GEEATVLALTDG 196 (417)
T ss_dssp TTCEEESCHHHHHHHHHHHTTSSS------C--CCEEEEECCC-SCEEEEEEEESS
T ss_pred CCEEEeCCHHHHHHHHHHHHhhcc------C--CeEEEEECcc-CcEEEEEEEEeC
Confidence 378888999999999888762211 1 5799999998 789999888863
No 96
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=48.31 E-value=1.3e+02 Score=27.40 Aligned_cols=106 Identities=13% Similarity=0.065 Sum_probs=70.1
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 017966 240 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 319 (363)
Q Consensus 240 N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~ 319 (363)
-|.+ -|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+.. .. |++-.|++
T Consensus 9 TPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~-----~g--vi~Gvg~~ 74 (286)
T 2r91_A 9 TTFR-GGRLDPELFANHVKNITS-----KGVDVVFVAGTTGLGPALSLQE-KMELTDAATSAA-----RR--VIVQVASL 74 (286)
T ss_dssp CCEE-TTEECHHHHHHHHHHHHH-----TTCCEEEETSTTTTGGGSCHHH-HHHHHHHHHHHC-----SS--EEEECCCS
T ss_pred cCcC-CCccCHHHHHHHHHHHHH-----CCCCEEEECccccChhhCCHHH-HHHHHHHHHHHh-----CC--EEEeeCCC
Confidence 5677 889999999999999885 6899988877433322222211 145556555543 12 88889999
Q ss_pred CHHHHHHHHHhhccccCC------ceeecCCC-CCHHHHHHHHHHHhHhc
Q 017966 320 NYQTGLAKMRALGEELGI------PLEVYGPE-ATMTGICKQAIDCIMSA 362 (363)
Q Consensus 320 ~~~~~~~~l~~~~~~~Gi------p~~~~~~~-~~~~eav~~~~~~~~~~ 362 (363)
+-.++.+..+.+ +++|. |-++| - .|.++.++.+-.++.+.
T Consensus 75 ~t~~ai~la~~A-~~~Gadavlv~~P~y~--~~~s~~~l~~~f~~va~a~ 121 (286)
T 2r91_A 75 NADEAIALAKYA-ESRGAEAVASLPPYYF--PRLSERQIAKYFRDLCSAV 121 (286)
T ss_dssp SHHHHHHHHHHH-HHTTCSEEEECCSCSS--TTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH-HhcCCCEEEEcCCcCC--CCCCHHHHHHHHHHHHHhc
Confidence 999998877653 24552 22322 2 47888888888887653
No 97
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=47.86 E-value=16 Score=37.38 Aligned_cols=64 Identities=20% Similarity=0.191 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHhhhccCCCCCeEEEEe--cccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 017966 247 APNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 324 (363)
Q Consensus 247 ~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~--~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~ 324 (363)
....+.+.++++-+.+ |+++++|++-+ |||-.... +.+-+.++.... .++||++.++|.-...|
T Consensus 321 ~~~~~~l~~~L~~a~~----d~~vkaVVL~i~spGG~~~~~------~~i~~~i~~l~~----~~kPVia~v~g~AasgG 386 (593)
T 3bf0_A 321 NVGGDTTAAQIRDARL----DPKVKAIVLRVNSPGGSVTAS------EVIRAELAAARA----AGKPVVVSMGGMAASGG 386 (593)
T ss_dssp SEEHHHHHHHHHHHHH----CTTEEEEEEEEEEEEECHHHH------HHHHHHHHHHHH----TTCCEEEEEEEEEETHH
T ss_pred hhHHHHHHHHHHHHHh----CCCCCEEEEEecCCCCCHHHH------HHHHHHHHHHHh----CCCCEEEEECCChHHHH
Confidence 4557888888888777 99999988877 66643221 223333333321 36899998877544444
No 98
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=47.72 E-value=29 Score=29.89 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhhccCCCCCeEEE--EecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHH
Q 017966 250 EEEVLQYARVVIDCATADPDGRKRAL--LIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAK 327 (363)
Q Consensus 250 ~e~~~~a~~~ll~~~~~~~~v~~vlv--~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~~~~ 327 (363)
.+.+.+.++.+-+ +++.+.|++ |.|||-.. -+ ..|.++++.+ ++||++.++|.-+..|-=+
T Consensus 40 a~~i~~~L~~l~~----~~~~~~I~l~InSPGG~v~---a~---~~I~~~i~~~-------~~pV~~~v~g~AaS~g~~I 102 (193)
T 1yg6_A 40 ANLIVAQMLFLEA----ENPEKDIYLYINSPGGVIT---AG---MSIYDTMQFI-------KPDVSTICMGQAASMGAFL 102 (193)
T ss_dssp HHHHHHHHHHHHH----HCSSSCEEEEEEECCBCHH---HH---HHHHHHHHHS-------SSCEEEEEEEEEETHHHHH
T ss_pred HHHHHHHHHHHHh----cCCCCCEEEEEECcCCCHH---HH---HHHHHHHHhc-------CCCEEEEEeeeHHHHHHHH
Confidence 3444444444433 455665444 44888642 22 6777777765 4688888777555555444
Q ss_pred H
Q 017966 328 M 328 (363)
Q Consensus 328 l 328 (363)
+
T Consensus 103 a 103 (193)
T 1yg6_A 103 L 103 (193)
T ss_dssp H
T ss_pred H
Confidence 4
No 99
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=46.98 E-value=93 Score=28.12 Aligned_cols=119 Identities=11% Similarity=0.089 Sum_probs=69.0
Q ss_pred CcEEEEecCCcHHHH------HHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCc
Q 017966 210 GRIWTMVAGGGASVI------YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 283 (363)
Q Consensus 210 g~I~ii~NG~G~~~~------~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~ 283 (363)
.+|++++.-.+.... ..+++..+ |.++-...-+.++.+.+.-+++++-+|+ .++.+++|+. .
T Consensus 182 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~ 249 (338)
T 3dbi_A 182 QEIAFLTGSMDSPTSIERLAGYKDALAQH--GIALNEKLIANGKWTPASGAEGVEMLLE---RGAKFSALVA-------S 249 (338)
T ss_dssp CSEEEECCCTTCHHHHHHHHHHHHHHHHT--TCCCCGGGEECCCSSHHHHHHHHHHHHH---TTCCCSEEEE-------S
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHC--CCCCCcceEEeCCCCHHHHHHHHHHHHc---CCCCCeEEEE-------C
Confidence 579988654332221 45677775 4333222234566777777777777765 3678888773 2
Q ss_pred hhHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 284 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 284 ~~~vA~~~~giv~a~~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
++.+| -|+++++++.+. ++| -|+...+....+ .+. -.+.+. .-++++..+.+++++.
T Consensus 250 nd~~A---~g~~~al~~~G~-----~vP~di~vvg~D~~~~~~---~~~-----p~lttv----~~~~~~~g~~a~~~l~ 309 (338)
T 3dbi_A 250 NDDMA---IGAMKALHERGV-----AVPEQVSVIGFDDIAIAP---YTV-----PALSSV----KIPVTEMIQEIIGRLI 309 (338)
T ss_dssp SHHHH---HHHHHHHHHTTC-----CTTTTCEEEEESCCTTGG---GSS-----SCCEEE----ECCHHHHHHHHHHHHH
T ss_pred ChHHH---HHHHHHHHHcCC-----CCCCCeEEEEECChHHHh---hcC-----CcceEE----ecCHHHHHHHHHHHHH
Confidence 46777 899999999863 333 355577653110 110 133322 3567777777666553
No 100
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=46.70 E-value=59 Score=26.89 Aligned_cols=94 Identities=10% Similarity=0.013 Sum_probs=44.8
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCC-chhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 017966 242 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA-NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 320 (363)
Q Consensus 242 lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~-~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~ 320 (363)
.| ++.+|+.++.+++.+-+.. ++-+.++|.-+++-+ +..+.. ..+.++++. .. .++..+ +.
T Consensus 41 ~D--yaHnP~si~a~l~al~~~~---~~~riivvf~~g~~s~r~k~~~---~~~~~~~~~-------aD--~vi~~~-~~ 102 (163)
T 3mvn_A 41 DD--FAHHPTAITATIDALRAKV---GQQRILAVLEPRSNTMKMGVHK---HELATSLQD-------AD--SVFIYQ-PP 102 (163)
T ss_dssp EE--CCCSHHHHHHHHHHHHHHH---TTSCEEEEECCC---------C---HHHHHHHTT-------CS--EEEEEC-C-
T ss_pred Ec--CCCCHHHHHHHHHHHHHhc---CCCcEEEEECCCCcchhhHHHH---HHHHHHHhc-------CC--EEEEEC-CC
Confidence 55 5788899999988875421 333444443366543 222222 333333321 12 222233 33
Q ss_pred HHH--HHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 321 YQT--GLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 321 ~~~--~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
+.. ..++++ ..+.++++ +.+.++|++.+.+.++
T Consensus 103 ~~~~~~~~~~~----~~~~~~~~---~~d~~eai~~~~~~~~ 137 (163)
T 3mvn_A 103 TIEWQVSEVLA----NLAQPAIS---ADDVDELVMRIVQQAK 137 (163)
T ss_dssp ---CCHHHHHT----TCCSCEEE---ESSHHHHHHHHHHHCC
T ss_pred CcccCHHHHHh----hCCCCeEE---ECCHHHHHHHHHHhCC
Confidence 211 223332 23445554 5799999999988764
No 101
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=46.16 E-value=55 Score=24.63 Aligned_cols=52 Identities=8% Similarity=0.071 Sum_probs=34.3
Q ss_pred ccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhHh
Q 017966 308 ARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 361 (363)
Q Consensus 308 ~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~~ 361 (363)
..+|+|+-..|....+-.+.-.++.+ -|+..-+.- .++|+|--+...+..+.
T Consensus 50 ngkplvvfvngasqndvnefqneakk-egvsydvlk-stdpeeltqrvreflkt 101 (112)
T 2lnd_A 50 NGKPLVVFVNGASQNDVNEFQNEAKK-EGVSYDVLK-STDPEELTQRVREFLKT 101 (112)
T ss_dssp CCSCEEEEECSCCHHHHHHHHHHHHH-HTCEEEEEE-CCCHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcccccHHHHHHHHHh-cCcchhhhc-cCCHHHHHHHHHHHHHh
Confidence 46899999999887766665555433 487665542 57888876665555443
No 102
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=45.32 E-value=1.4e+02 Score=25.08 Aligned_cols=124 Identities=12% Similarity=0.066 Sum_probs=78.1
Q ss_pred CcEEEEecC------CcHHHHHHHHHHhcCCCCCCCc--eeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEe---c
Q 017966 210 GRIWTMVAG------GGASVIYADTVGDLGYASELGN--YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI---G 278 (363)
Q Consensus 210 g~I~ii~NG------~G~~~~~~D~l~~~g~gg~paN--~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~---~ 278 (363)
-||+|+..= ..+---+.|.|..+ |.+..| -++..|.-. +--+.+.+.+ ..+.|+++..- -
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~--gv~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIaLG~VIr 83 (154)
T 1rvv_A 13 LKIGIVVGRFNDFITSKLLSGAEDALLRH--GVDTNDIDVAWVPGAFE---IPFAAKKMAE----TKKYDAIITLGTVIR 83 (154)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHT--TCCGGGEEEEEESSGGG---HHHHHHHHHH----TSCCSEEEEEEEEEC
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHc--CCCccceEEEECCcHHH---HHHHHHHHHh----cCCCCEEEEeeeeec
Confidence 456666432 13444478999887 555443 445666443 4556666665 66789877665 3
Q ss_pred ccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHH
Q 017966 279 GGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 357 (363)
Q Consensus 279 g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvr-l~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~ 357 (363)
|+...++-|+ +.+.+.+-+..-. ..+||... +.-.|.+++.+. +|... ..-=.||+..+++
T Consensus 84 G~T~Hfd~V~---~~vs~Gl~~v~l~---~~vPV~~GVLT~~~~eQA~~R-------ag~~~-----~nkG~eaA~aale 145 (154)
T 1rvv_A 84 GATTHYDYVC---NEAAKGIAQAANT---TGVPVIFGIVTTENIEQAIER-------AGTKA-----GNKGVDCAVSAIE 145 (154)
T ss_dssp CSSSHHHHHH---HHHHHHHHHHHHH---HCSCEEEEEEEESSHHHHHHT-------EEETT-----EEHHHHHHHHHHH
T ss_pred CCchHHHHHH---HHHHHHHHHHHhh---hCCCEEEEecCCCCHHHHHHH-------hcccc-----cchHHHHHHHHHH
Confidence 8888888888 7777766654432 47897776 666678877432 34322 2345788888888
Q ss_pred HhH
Q 017966 358 CIM 360 (363)
Q Consensus 358 ~~~ 360 (363)
+++
T Consensus 146 m~~ 148 (154)
T 1rvv_A 146 MAN 148 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 103
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=45.14 E-value=40 Score=31.57 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=35.9
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCC
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 66 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~ 66 (363)
||.++.+.+++.++.++.+. . -..++||++++ ++|+.+++..|..
T Consensus 186 Gv~~v~~~~el~~a~~~~~~-----~-----~~~~lvEe~I~-G~E~~v~vl~~~~ 230 (364)
T 2i87_A 186 GISKCNNEAELKEGIKEAFQ-----F-----DRKLVIEQGVN-AREIEVAVLGNDY 230 (364)
T ss_dssp TCEEESSHHHHHHHHHHHHT-----T-----CSEEEEEECCC-CEEEEEEEEESSS
T ss_pred CEEEECCHHHHHHHHHHHHh-----c-----CCeEEEEeCcc-CeEEEEEEEcCCC
Confidence 78888999998888776642 1 14799999998 6899999998864
No 104
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=44.75 E-value=1.6e+02 Score=25.67 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=56.3
Q ss_pred HHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhh
Q 017966 225 YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESK 304 (363)
Q Consensus 225 ~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~ 304 (363)
...++...|+ +-+|+|-+.+++.+.++++- .+.+.|.+-..+.++....- ++.+++.+++.+..
T Consensus 112 v~~~l~~~G~-----~Vi~LG~~vp~e~iv~~~~~--------~~~d~v~l~~S~l~~~~~~~---~~~~i~~l~~~~~~ 175 (215)
T 3ezx_A 112 VTTMLGANGF-----QIVDLGVDVLNENVVEEAAK--------HKGEKVLLVGSALMTTSMLG---QKDLMDRLNEEKLR 175 (215)
T ss_dssp HHHHHHHTSC-----EEEECCSSCCHHHHHHHHHH--------TTTSCEEEEEECSSHHHHTH---HHHHHHHHHHTTCG
T ss_pred HHHHHHHCCC-----eEEEcCCCCCHHHHHHHHHH--------cCCCEEEEEchhcccCcHHH---HHHHHHHHHHcCCC
Confidence 3556666533 55899999999988776332 23444555222223322222 36777777776421
Q ss_pred hhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHH
Q 017966 305 LKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 358 (363)
Q Consensus 305 ~~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~ 358 (363)
.+.||+ +||.-..+ +.-+ +.|--.| ..+..+||+.+-++
T Consensus 176 ---~~v~v~--vGG~~~~~--~~a~----~iGad~~----~~dA~~av~~a~~l 214 (215)
T 3ezx_A 176 ---DSVKCM--FGGAPVSD--KWIE----EIGADAT----AENAAEAAKVALEV 214 (215)
T ss_dssp ---GGSEEE--EESSSCCH--HHHH----HHTCCBC----CSSHHHHHHHHHHT
T ss_pred ---CCCEEE--EECCCCCH--HHHH----HhCCeEE----ECCHHHHHHHHHHh
Confidence 145554 45533322 1222 2454333 58899999877654
No 105
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=44.66 E-value=1e+02 Score=28.17 Aligned_cols=105 Identities=10% Similarity=0.067 Sum_probs=68.1
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 017966 245 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 324 (363)
Q Consensus 245 gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~ 324 (363)
-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|+++-.++
T Consensus 15 dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~~t~~a 84 (292)
T 2vc6_A 15 DDRIDEVALHDLVEWQIE-----EGSFGLVPCGTTGESPTLSKSE-HEQVVEITIKTAN----GRVPVIAGAGSNSTAEA 84 (292)
T ss_dssp TTEECHHHHHHHHHHHHH-----TTCSEEETTSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCBEEECCCSSHHHH
T ss_pred CCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCccHHHH
Confidence 578899999999999885 5899988766333222211111 1345555554432 26899999999999988
Q ss_pred HHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 325 LAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 325 ~~~l~~~~~~~Gi------p~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
.+..+.+ +++|. |-++| -.|.++.++.+-.++.+.
T Consensus 85 i~la~~A-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~ia~a~ 125 (292)
T 2vc6_A 85 IAFVRHA-QNAGADGVLIVSPYYN--KPTQEGIYQHFKAIDAAS 125 (292)
T ss_dssp HHHHHHH-HHTTCSEEEEECCCSS--CCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-HHcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHhC
Confidence 8777643 23552 22222 357888888888877653
No 106
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=44.63 E-value=35 Score=32.61 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=38.4
Q ss_pred CeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeC
Q 017966 10 GLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 65 (363)
Q Consensus 10 GGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~ 65 (363)
-||.+..|.+|+.+++++++..... + ..-..++||++++ +.|+.+.+..|.
T Consensus 151 ~Gv~~v~~~~el~~~~~~~~~~~~~--g--~~~~~~lvEe~i~-g~E~sv~~~~~G 201 (424)
T 2yw2_A 151 KGAVVCETVEKAIETLDRFLNKKIF--G--KSSERVVIEEFLE-GEEASYIVMING 201 (424)
T ss_dssp CSEEEESSHHHHHHHHHHHHTSCTT--G--GGGSSEEEEECCC-SEEEEEEEEEET
T ss_pred CCEEEECCHHHHHHHHHHHHhhhhc--c--CCCCeEEEEECCC-CcEEEEEEEEcC
Confidence 3788899999999998888763211 1 1124699999998 789999888874
No 107
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=44.46 E-value=35 Score=33.08 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=36.7
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeC
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 65 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~ 65 (363)
||.+..|.+|+.+++++++.... .+ ..-..++||++++ +.|+.+.+..|.
T Consensus 179 Gv~~v~~~~el~~~~~~~~~~~~--~g--~~~~~~lvEe~i~-G~E~sv~~~~dG 228 (452)
T 2qk4_A 179 GVIVAKSKEEACKAVQEIMQEKA--FG--AAGETIVIEELLD-GEEVSCLCFTDG 228 (452)
T ss_dssp CEEECSSHHHHHHHHHHHTTC-----------CCEEEEECCC-SEEEEEEEEECS
T ss_pred CEEEeCCHHHHHHHHHHHHhhhh--cc--CCCCeEEEEECCC-CCeEEEEEEECC
Confidence 78888999999999888865321 11 1125799999999 789999888863
No 108
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=44.34 E-value=1.3e+02 Score=25.13 Aligned_cols=124 Identities=11% Similarity=0.024 Sum_probs=77.8
Q ss_pred CcEEEEecC------CcHHHHHHHHHHhcCCCCCCCc--eeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEe---c
Q 017966 210 GRIWTMVAG------GGASVIYADTVGDLGYASELGN--YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI---G 278 (363)
Q Consensus 210 g~I~ii~NG------~G~~~~~~D~l~~~g~gg~paN--~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~---~ 278 (363)
-||+|+..= ..+---+.|.|..+ |.+..| -++..|.-. +--+.+.+.+ ..+.|+++..- -
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~--gv~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIalG~VIr 83 (154)
T 1hqk_A 13 LRFGIVASRFNHALVDRLVEGAIDCIVRH--GGREEDITLVRVPGSWE---IPVAAGELAR----KEDIDAVIAIGVLIR 83 (154)
T ss_dssp CCEEEEEECTTHHHHHHHHHHHHHHHHHT--TCCGGGEEEEEESSGGG---HHHHHHHHHT----CTTCCEEEEEEEEEC
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHc--CCCccceEEEECCcHHH---HHHHHHHHHh----cCCCCEEEEeeeeec
Confidence 456666432 13444478999887 555443 345666443 4455666665 66789877665 3
Q ss_pred ccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHH
Q 017966 279 GGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 357 (363)
Q Consensus 279 g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvr-l~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~ 357 (363)
|+...++-|+ +.+.+.+-+..-. ..+||... +.-.|.+++.+. +|... ..-=.||+..+++
T Consensus 84 G~T~Hfd~Va---~~vs~gl~~v~l~---~~vPV~~GVLT~~~~eQA~~R-------ag~~~-----~nkG~eaA~aale 145 (154)
T 1hqk_A 84 GATPHFDYIA---SEVSKGLANLSLE---LRKPITFGVITADTLEQAIER-------AGTKH-----GNKGWEAALSAIE 145 (154)
T ss_dssp CSSTHHHHHH---HHHHHHHHHHHHH---HTSCEEEEEEEESSHHHHHHH-------EEETT-----EEHHHHHHHHHHH
T ss_pred CCchHHHHHH---HHHHHHHHHHHhh---cCCCEEEEEeCCCCHHHHHHH-------hcccc-----cchHHHHHHHHHH
Confidence 8888888888 7777766654432 46897776 666678887432 33321 2345788888888
Q ss_pred HhH
Q 017966 358 CIM 360 (363)
Q Consensus 358 ~~~ 360 (363)
+++
T Consensus 146 m~~ 148 (154)
T 1hqk_A 146 MAN 148 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 109
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=44.13 E-value=67 Score=33.98 Aligned_cols=95 Identities=22% Similarity=0.261 Sum_probs=58.1
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC-
Q 017966 240 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG- 318 (363)
Q Consensus 240 N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G- 318 (363)
.-+|+|.+.++|.+.+++ . ..+++.|.+-. -.+...+.. ..+++.+++.+. .. +.+..||
T Consensus 634 eVi~lG~~v~~eeiv~aA---~-----e~~adiVglSs--l~~~~~~~~---~~vi~~Lr~~G~----~d--v~VivGG~ 694 (762)
T 2xij_A 634 DVDIGPLFQTPREVAQQA---V-----DADVHAVGVST--LAAGHKTLV---PELIKELNSLGR----PD--ILVMCGGV 694 (762)
T ss_dssp EEEECCTTCCHHHHHHHH---H-----HTTCSEEEEEE--CSSCHHHHH---HHHHHHHHHTTC----TT--SEEEEEES
T ss_pred EEeeCCCCCCHHHHHHHH---H-----HcCCCEEEEee--ecHHHHHHH---HHHHHHHHhcCC----CC--CEEEEeCC
Confidence 457889999999877762 3 24556555433 233333333 778888888752 23 4444565
Q ss_pred -CCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 319 -PNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 319 -~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
+..+ ...+++ .|+.- +|++-++..+++..+.+...
T Consensus 695 ~P~~d--~~~l~~----~GaD~-~f~pgtd~~e~~~~i~~~l~ 730 (762)
T 2xij_A 695 IPPQD--YEFLFE----VGVSN-VFGPGTRIPKAAVQVLDDIE 730 (762)
T ss_dssp CCGGG--HHHHHH----HTCCE-EECTTCCHHHHHHHHHHHHH
T ss_pred CCccc--HHHHHh----CCCCE-EeCCCCCHHHHHHHHHHHHH
Confidence 3322 233454 68764 45556799999999888764
No 110
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=43.43 E-value=1.1e+02 Score=26.91 Aligned_cols=91 Identities=12% Similarity=0.040 Sum_probs=55.2
Q ss_pred CcEEEEecCCcHHHH------HHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCc
Q 017966 210 GRIWTMVAGGGASVI------YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 283 (363)
Q Consensus 210 g~I~ii~NG~G~~~~------~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~ 283 (363)
.+|++++.-.+.... ..+++..+ |-.+....-..++.+.+.-+++++-+|+ .++..++|+. .
T Consensus 127 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 194 (294)
T 3qk7_A 127 QRIAFVSTDARISYVDQRLQGYVQTMSEA--GLMPLAGYLQKADPTRPGGYLAASRLLA---LEVPPTAIIT-------D 194 (294)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHHHHHTT--TCCCCTTCEEEECSSHHHHHHHHHHHHH---SSSCCSEEEE-------S
T ss_pred ceEEEEeCCcccchHHHHHHHHHHHHHHC--CCCCChhHeecCCCCHHHHHHHHHHHHc---CCCCCcEEEE-------C
Confidence 578888655443222 34667665 4332221223456677777777666665 3577887773 3
Q ss_pred hhHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCC
Q 017966 284 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPN 320 (363)
Q Consensus 284 ~~~vA~~~~giv~a~~~~~~~~~~~~~p---vvvrl~G~~ 320 (363)
++.+| -|+++++++.+. ++| -|+...+..
T Consensus 195 nd~~A---~g~~~al~~~G~-----~vP~di~vig~D~~~ 226 (294)
T 3qk7_A 195 CNMLG---DGVASALDKAGL-----LGGEGISLIAYDGLP 226 (294)
T ss_dssp SHHHH---HHHHHHHHHTTC-----SSTTSCEEEEETCSC
T ss_pred CHHHH---HHHHHHHHHcCC-----CCCCceEEEeecCcc
Confidence 47777 899999998862 333 355577654
No 111
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=41.99 E-value=25 Score=32.22 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=21.9
Q ss_pred CeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEe-CCCCeE
Q 017966 10 GLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSD-RLGCTI 70 (363)
Q Consensus 10 GGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D-~~~p~i 70 (363)
.||.+..|.+|+.+++++ ...++||++++. .|+.+.+..| ..+.++
T Consensus 163 ~gv~~v~~~~el~~~~~~--------------~~~~lvee~i~G-~e~~v~~~~d~~~G~~~ 209 (331)
T 2pn1_A 163 IEVRRVETVEEVEQLFSK--------------NTDLIVQELLVG-QELGVDAYVDLISGKVT 209 (331)
T ss_dssp ----------------------------------CEEEEECCCS-EEEEEEEEECTTTCCEE
T ss_pred CCeEEeCCHHHHHHHHHh--------------CCCeEEEecCCC-cEEEEEEEEecCCCeEE
Confidence 367777788777655322 136899999985 9999999999 566554
No 112
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=41.79 E-value=31 Score=32.10 Aligned_cols=46 Identities=9% Similarity=-0.014 Sum_probs=36.2
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCC
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 67 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~ 67 (363)
||.++.+.+|+.++.++.+. + -..++||++++ ++|+.+.+..|..+
T Consensus 180 Gv~~v~~~~el~~a~~~~~~-----~-----~~~~lvEe~I~-G~E~~v~vl~~~~~ 225 (343)
T 1e4e_A 180 GVKKVNSADELDYAIESARQ-----Y-----DSKILIEQAVS-GCEVGCAVLGNSAA 225 (343)
T ss_dssp TCEEECSGGGHHHHHHHHTT-----T-----CSSEEEEECCC-SEEEEEEEEEETTC
T ss_pred CEEEeCCHHHHHHHHHHHHh-----c-----CCcEEEEeCcC-CeEEEEEEEeCCCC
Confidence 68888899998888776642 1 13699999998 68999999998754
No 113
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=40.68 E-value=86 Score=29.96 Aligned_cols=68 Identities=10% Similarity=0.125 Sum_probs=40.3
Q ss_pred eeeccCC----CCHHHHHHHHHHHHhhhccCCCCCeEEEEe--ccc-----CCchhHHhhhHHHHHHHHHHhhhhh-hcc
Q 017966 241 YAEYSGA----PNEEEVLQYARVVIDCATADPDGRKRALLI--GGG-----IANFTDVATTFNGIIRALREKESKL-KAA 308 (363)
Q Consensus 241 ~lD~gG~----a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~--~g~-----i~~~~~vA~~~~giv~a~~~~~~~~-~~~ 308 (363)
.+.+||+ -+++.|.++++.+- +..+.+-||+ |.. +.+.+. . ..+++++++..... ...
T Consensus 150 ~vniggn~~t~~~~~dy~~~~~~~~------~~ad~ielNisCPn~~G~~~l~~~~~-l---~~ll~av~~~~~~~~~~~ 219 (367)
T 3zwt_A 150 GVNLGKNKTSVDAAEDYAEGVRVLG------PLADYLVVNVSSPNTAGLRSLQGKAE-L---RRLLTKVLQERDGLRRVH 219 (367)
T ss_dssp EEEECCCTTCSCHHHHHHHHHHHHG------GGCSEEEEECCCTTSTTGGGGGSHHH-H---HHHHHHHHHHHHTSCGGG
T ss_pred EEEEecCCCCCcCHHHHHHHHHHHh------hhCCEEEEECCCCCCCCccccCCHHH-H---HHHHHHHHHHHhhccccC
Confidence 3667886 35788888888764 3468899998 321 122222 2 45666665532110 014
Q ss_pred cceEEEEeCC
Q 017966 309 RMHIFVRRGG 318 (363)
Q Consensus 309 ~~pvvvrl~G 318 (363)
++||++++.-
T Consensus 220 ~~Pv~vKi~p 229 (367)
T 3zwt_A 220 RPAVLVKIAP 229 (367)
T ss_dssp CCEEEEEECS
T ss_pred CceEEEEeCC
Confidence 6899999654
No 114
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=40.20 E-value=1.7e+02 Score=24.62 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=79.9
Q ss_pred CCcEEEEecC------CcHHHHHHHHHHhcCCC-CCCCc--eeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEe--
Q 017966 209 KGRIWTMVAG------GGASVIYADTVGDLGYA-SELGN--YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI-- 277 (363)
Q Consensus 209 ~g~I~ii~NG------~G~~~~~~D~l~~~g~g-g~paN--~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~-- 277 (363)
+-||+|+..= -.+---+.|.|..+ | .+..| -++..|.-. +--+++.+++ ..+.|+++..-
T Consensus 12 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~--G~v~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIaLG~V 82 (156)
T 3nq4_A 12 DARVAITIARFNQFINDSLLDGAVDALTRI--GQVKDDNITVVWVPGAYE---LPLATEALAK----SGKYDAVVALGTV 82 (156)
T ss_dssp TCCEEEEEESTTHHHHHHHHHHHHHHHHHT--TCCCTTSEEEEEESSTTT---HHHHHHHHHH----HCSCSEEEEEEEE
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHc--CCCcccceEEEEcCcHHH---HHHHHHHHHh----cCCCCEEEEeeee
Confidence 3456666421 13444578999987 5 44444 356677655 4455555555 56788877665
Q ss_pred -cccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHH
Q 017966 278 -GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQA 355 (363)
Q Consensus 278 -~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvr-l~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~ 355 (363)
-|+...++-|+ +.+.+.+-+..-. ..+||... +.-.|.+++.+. +|... ..-=.||+..+
T Consensus 83 IrG~T~Hfd~Va---~~v~~Gl~~v~L~---~~vPV~~GVLT~~~~eQA~~R-------ag~~~-----~nKG~eaA~aa 144 (156)
T 3nq4_A 83 IRGGTAHFEYVA---GGASNGLASVAQD---SGVPVAFGVLTTESIEQAIER-------AGTKA-----GNKGAEAALTA 144 (156)
T ss_dssp ECCSSTHHHHHH---HHHHHHHHHHHHH---HCCCEEEEEEEESCHHHHHHH-------BTSTT-----CBHHHHHHHHH
T ss_pred ecCCchHHHHHH---HHHHHHHHHHHhc---cCCCEEEEEeCCCCHHHHHHH-------hCCcc-----cccHHHHHHHH
Confidence 38888888888 7777766655432 47898777 777788877543 34322 34567899999
Q ss_pred HHHhH
Q 017966 356 IDCIM 360 (363)
Q Consensus 356 ~~~~~ 360 (363)
+++++
T Consensus 145 lem~~ 149 (156)
T 3nq4_A 145 LEMIN 149 (156)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88875
No 115
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=39.15 E-value=1.5e+02 Score=24.95 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=80.1
Q ss_pred CcEEEEecC------CcHHHHHHHHHHh-cCCCCCCCc--eeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEe---
Q 017966 210 GRIWTMVAG------GGASVIYADTVGD-LGYASELGN--YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI--- 277 (363)
Q Consensus 210 g~I~ii~NG------~G~~~~~~D~l~~-~g~gg~paN--~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~--- 277 (363)
-||+|+..- -.+---+.|.|.. + |.+..| -++..|.-. +--+.+.+.+ ..+.|+|+..-
T Consensus 18 ~riaIV~arfn~~I~~~Ll~ga~~~l~~~~--Gv~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIaLG~VI 88 (159)
T 1kz1_A 18 LRILIVHARGNLQAIEPLVKGAVETMIEKH--DVKLENIDIESVPGSWE---LPQGIRASIA----RNTYDAVIGIGVLI 88 (159)
T ss_dssp CCEEEEECCTTHHHHHHHHHHHHHHHHHHH--CCCGGGEEEEECSSGGG---HHHHHHHHHH----HSCCSEEEEEEEEE
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHHc--CCCccceEEEECCcHHH---HHHHHHHHHh----cCCCCEEEEecccc
Confidence 457776432 1244447799988 7 656555 556666543 4455566665 56788877655
Q ss_pred cccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHH
Q 017966 278 GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 356 (363)
Q Consensus 278 ~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvr-l~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~ 356 (363)
=|+...++-|+ +.+.+.+-+..-. ..+||... +.-.|.+++.+. +|..-. ..-=.||+..++
T Consensus 89 rG~T~Hfd~Va---~~v~~Gl~~v~L~---~~vPV~~GVLT~~~~eQA~~R-------ag~~~~----~nKG~eaA~aal 151 (159)
T 1kz1_A 89 KGSTMHFEYIS---EAVVHGLMRVGLD---SGVPVILGLLTVLNEEQALYR-------AGLNGG----HNHGNDWGSAAV 151 (159)
T ss_dssp CCSSSHHHHHH---HHHHHHHHHHHHH---HCCCEEEEEEEESSHHHHHHH-------BTCTTC----CBHHHHHHHHHH
T ss_pred cCCchHHHHHH---HHHHHHHHHHHhh---cCCCEEEEEeCCCCHHHHHHH-------hCCccc----cchHHHHHHHHH
Confidence 48888888888 7777776665432 47998777 777788877543 332100 234578999999
Q ss_pred HHhH
Q 017966 357 DCIM 360 (363)
Q Consensus 357 ~~~~ 360 (363)
++++
T Consensus 152 em~~ 155 (159)
T 1kz1_A 152 EMGL 155 (159)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 116
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=38.36 E-value=56 Score=28.79 Aligned_cols=72 Identities=10% Similarity=-0.007 Sum_probs=36.0
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCeE--EEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 017966 242 AEYSGAPNEEEVLQYARVVIDCATADPDGRKR--ALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 319 (363)
Q Consensus 242 lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~v--lv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~ 319 (363)
+-++|..++.........++.+-..++ +.| .||.|||-.. -+ ..|.++++.. +.||++...|.
T Consensus 42 I~l~G~I~~~~a~~i~~~L~~l~~~~~--k~I~l~INSPGGsv~---a~---~~I~~~i~~~-------~~pV~t~v~g~ 106 (215)
T 2f6i_A 42 IYLTDEINKKTADELISQLLYLDNINH--NDIKIYINSPGGSIN---EG---LAILDIFNYI-------KSDIQTISFGL 106 (215)
T ss_dssp EEECSCBCHHHHHHHHHHHHHHHHHCC--SCEEEEEEECCBCHH---HH---HHHHHHHHHS-------SSCEEEEEEEE
T ss_pred EEEccEECHHHHHHHHHHHHHHHhCCC--CcEEEEEECCCCCHH---HH---HHHHHHHHhc-------CCCEEEEEeeE
Confidence 344555554333333333322111244 544 4455988642 22 6788888765 35777766664
Q ss_pred CHHHHHHHH
Q 017966 320 NYQTGLAKM 328 (363)
Q Consensus 320 ~~~~~~~~l 328 (363)
-+..|-=++
T Consensus 107 AAS~g~~Ia 115 (215)
T 2f6i_A 107 VASMASVIL 115 (215)
T ss_dssp ECHHHHHHH
T ss_pred hHhHHHHHH
Confidence 444443333
No 117
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=38.33 E-value=49 Score=29.12 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=30.5
Q ss_pred CCCCCeEEEE--ecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHH
Q 017966 267 DPDGRKRALL--IGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMR 329 (363)
Q Consensus 267 ~~~v~~vlv~--~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~~~~l~ 329 (363)
+++++.|++. .|||... -. ..|.++++.. ++||++.+.|.-...|--++.
T Consensus 72 ~~~~k~I~l~InSPGG~v~---ag---~~I~~~i~~~-------~~pV~t~v~G~AaS~G~~Ia~ 123 (218)
T 1y7o_A 72 QDSTKDIYLYVNTPGGSVS---AG---LAIVDTMNFI-------KADVQTIVMGMAASMGTVIAS 123 (218)
T ss_dssp HCTTSCEEEEEEECCBCHH---HH---HHHHHHHHHS-------SSCEEEEEEEEEETHHHHHHT
T ss_pred cCCCCCEEEEEECcCCCHH---HH---HHHHHHHHhc-------CCCEEEEEccEeHHHHHHHHH
Confidence 5666664444 4888542 12 5677777654 478888877765555555553
No 118
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=37.60 E-value=2.3e+02 Score=25.52 Aligned_cols=125 Identities=11% Similarity=0.016 Sum_probs=0.0
Q ss_pred CCcEEEEecCCcHHHH------HHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCC
Q 017966 209 KGRIWTMVAGGGASVI------YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 282 (363)
Q Consensus 209 ~g~I~ii~NG~G~~~~------~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~ 282 (363)
.++|++++...+.... ..+++..+ |. +-...-+-++.+.+.-+++++-+|+ ++|++++|+ +
T Consensus 145 ~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~L~---~~~~~~aI~-------~ 211 (350)
T 3h75_A 145 GIELLAFSGLKVTPAAQLRERGLRRALAEH--PQ-VHLRQLVYGEWNRERAYRQAQQLLK---RYPKTQLVW-------S 211 (350)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHC--TT-EEEEEEEECTTCHHHHHHHHHHHHH---HCTTEEEEE-------E
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHHHC--CC-eEEEEEeeCCCcHHHHHHHHHHHHH---hCCCcCEEE-------E
Q ss_pred chhHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 017966 283 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 359 (363)
Q Consensus 283 ~~~~vA~~~~giv~a~~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~ 359 (363)
.++.+| .|+++++++.+ .++| .|+...+. ..+.+.+.+ -.+.+.....+.--..|+..+++..
T Consensus 212 ~~d~~a---~g~~~al~~~G-----~~vP~di~vvg~d~~--~~~l~~~~~----~~lttv~~~~~~~G~~av~~l~~~l 277 (350)
T 3h75_A 212 ANDEMA---LGAMQAARELG-----RKPGTDLLFSGVNSS--PEALQALID----GKLSVLEAGHFTLGGWALVALHDDA 277 (350)
T ss_dssp SSHHHH---HHHHHHHHHTT-----CCBTTTBEEEEESCC--HHHHHHHHH----TSSCEEEECGGGHHHHHHHHHHHHH
T ss_pred CChHHH---HHHHHHHHHcC-----CCCCCCeEEEecCCC--HHHHHHHHc----CCeeEEEcCchhhHHHHHHHHHHHH
Q ss_pred H
Q 017966 360 M 360 (363)
Q Consensus 360 ~ 360 (363)
+
T Consensus 278 ~ 278 (350)
T 3h75_A 278 L 278 (350)
T ss_dssp T
T ss_pred c
No 119
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=37.58 E-value=24 Score=33.66 Aligned_cols=47 Identities=17% Similarity=0.027 Sum_probs=36.9
Q ss_pred CeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCC
Q 017966 10 GLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 67 (363)
Q Consensus 10 GGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~ 67 (363)
-||.++.|.+|+.++.++.+.. -..++||++++ ++|+-+++..|...
T Consensus 202 ~GV~~v~~~~eL~~a~~~a~~~----------~~~vlVEe~I~-G~E~~v~vl~~~~~ 248 (373)
T 3lwb_A 202 IGVSRVSSWDQLPAAVARARRH----------DPKVIVEAAIS-GRELECGVLEMPDG 248 (373)
T ss_dssp TTCEEECSGGGHHHHHHHHHTT----------CSSEEEEECCE-EEEEEEEEEECTTS
T ss_pred CCEEEeCCHHHHHHHHHHHHhc----------CCCEEEeCCCC-CeEEEEEEEECCCC
Confidence 3688889999988887766431 13699999998 79999999998754
No 120
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=37.48 E-value=67 Score=29.80 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=35.1
Q ss_pred EEEe-cccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-------------eCCCCHHHHHHHHHhhccccCCce
Q 017966 274 ALLI-GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-------------RGGPNYQTGLAKMRALGEELGIPL 339 (363)
Q Consensus 274 lv~~-~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvr-------------l~G~~~~~~~~~l~~~~~~~Gip~ 339 (363)
+++. |..+-+-+.+-++++.+.++-.+. .++++.+ ..|...++|.++|++++++.|+|+
T Consensus 19 ~vIaGPCsie~~~~~~e~A~~lk~~~~~~-------~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~Glp~ 91 (288)
T 3tml_A 19 FLIAGTCVVESEQMTIDTAGRLKEICEKL-------NVPFIYKSSYDKANRSSGKSFRGLGMDEGLRILSEVKRQLGLPV 91 (288)
T ss_dssp EEEEECSBCCCHHHHHHHHHHHHHHHHHH-------TCCEEEECBC--------------CHHHHHHHHHHHHHHHCCCE
T ss_pred EEEEeCCcCCCHHHHHHHHHHHHHHHHHc-------CCCEEEecccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeE
Confidence 3444 888877555443334443332222 2444443 445557899999999999999998
Q ss_pred e
Q 017966 340 E 340 (363)
Q Consensus 340 ~ 340 (363)
.
T Consensus 92 ~ 92 (288)
T 3tml_A 92 L 92 (288)
T ss_dssp E
T ss_pred E
Confidence 4
No 121
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=37.27 E-value=2.3e+02 Score=26.59 Aligned_cols=105 Identities=10% Similarity=0.045 Sum_probs=68.5
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 017966 240 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 319 (363)
Q Consensus 240 N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~ 319 (363)
-|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++ ... .++||++-.|++
T Consensus 36 TPF~~dg~ID~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~vi~~--~~~-----grvpViaGvg~~ 102 (344)
T 2hmc_A 36 TPCRQDRTPDFDALVRKGKELIA-----DGMSAVVYCGSMGDWPLLTDEQ-RMEGVER--LVK-----AGIPVIVGTGAV 102 (344)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCCCEEESSGGGTGGGSCHHH-HHHHHHH--HHH-----TTCCEEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccCcChhhCCHHH-HHHHHHH--HhC-----CCCcEEEecCCC
Confidence 45555688999999999999885 6899998877433322222111 1345554 221 368999999999
Q ss_pred CHHHHHHHHHhhccccCC------ceeecCCC-CCHHHHHHHHHHHhH
Q 017966 320 NYQTGLAKMRALGEELGI------PLEVYGPE-ATMTGICKQAIDCIM 360 (363)
Q Consensus 320 ~~~~~~~~l~~~~~~~Gi------p~~~~~~~-~~~~eav~~~~~~~~ 360 (363)
+..++.+..+.+ +++|. |-++| - .+.++.++.+-.++.
T Consensus 103 st~eai~la~~A-~~~Gadavlv~~P~y~--~~~s~~~l~~~f~~IA~ 147 (344)
T 2hmc_A 103 NTASAVAHAVHA-QKVGAKGLMVIPRVLS--RGSVIAAQKAHFKAILS 147 (344)
T ss_dssp SHHHHHHHHHHH-HHHTCSEEEECCCCSS--STTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEEECCCccC--CCCCHHHHHHHHHHHHh
Confidence 989888777643 23452 22222 2 477888888888776
No 122
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=36.45 E-value=1.9e+02 Score=24.23 Aligned_cols=116 Identities=14% Similarity=-0.001 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhh-hccCCCCCeEEEEe---cccCCchhHHhhhHHHHHH
Q 017966 221 ASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDC-ATADPDGRKRALLI---GGGIANFTDVATTFNGIIR 296 (363)
Q Consensus 221 ~~~~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~-~~~~~~v~~vlv~~---~g~i~~~~~vA~~~~giv~ 296 (363)
+---+.|.|..+ | .--.-+++.|.- .+--+++.+.+. .....+.|+++..- -|+...++-|+ +.+.+
T Consensus 30 Ll~gA~~~l~~~--G-~~i~v~~VPGaf---EiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~Hfd~Va---~~v~~ 100 (157)
T 2i0f_A 30 LLDGAKAALDEA--G-ATYDVVTVPGAL---EIPATISFALDGADNGGTEYDGFVALGTVIRGETYHFDIVS---NESCR 100 (157)
T ss_dssp HHHHHHHHHHHT--T-CEEEEEEESSGG---GHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSSTTHHHH---HHHHH
T ss_pred HHHHHHHHHHHc--C-CCeEEEECCcHH---HHHHHHHHHHhhccccCCCCCEEEEeeeeecCCchHHHHHH---HHHHH
Confidence 344467889887 4 111233455543 344555555540 00116788877655 48888888888 77777
Q ss_pred HHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 297 ALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 297 a~~~~~~~~~~~~~pvvvr-l~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
.+-+..-. ..+||... |.-.|.+++.+.- |... ..-=.||+..++++++
T Consensus 101 gl~~vsl~---~~vPV~~GVLT~~~~eQA~~Ra-------g~~~-----~nkG~eaA~aAlem~~ 150 (157)
T 2i0f_A 101 ALTDLSVE---ESIAIGNGILTVENEEQAWVHA-------RRED-----KDKGGFAARAALTMIG 150 (157)
T ss_dssp HHHHHHHH---TTCCEEEEEEEESSHHHHHHHH-------CTTT-----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHhh---cCCCEEEEEeCCCCHHHHHHHh-------Cccc-----cccHHHHHHHHHHHHH
Confidence 77665432 47998777 7777888876544 3211 2346788899888876
No 123
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=36.00 E-value=1.2e+02 Score=22.56 Aligned_cols=71 Identities=11% Similarity=-0.002 Sum_probs=38.3
Q ss_pred CCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHH
Q 017966 270 GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMT 349 (363)
Q Consensus 270 v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~ 349 (363)
.+.++++. ++++..+..+ ...+.+..+.... ....+. +.|.+ ..-+++|+..+...-+++ +.|.+
T Consensus 43 ~~~vvlDl-s~v~~iDssg--l~~L~~~~~~~~~----~g~~l~--l~~~~-~~v~~~l~~~gl~~~~~i-----~~~~~ 107 (116)
T 1th8_B 43 IRHIVLNL-GQLTFMDSSG--LGVILGRYKQIKN----VGGQMV--VCAVS-PAVKRLFDMSGLFKIIRV-----EADEQ 107 (116)
T ss_dssp CCEEEEEE-EEEEEECHHH--HHHHHHHHHHHHH----TTCCEE--EESCC-HHHHHHHHHHTGGGTSEE-----ESSHH
T ss_pred CcEEEEEC-CCCcEEccHH--HHHHHHHHHHHHH----hCCeEE--EEeCC-HHHHHHHHHhCCceeEEE-----eCCHH
Confidence 45555444 5555555433 2556655555442 234443 34444 456777776433334544 67999
Q ss_pred HHHHHH
Q 017966 350 GICKQA 355 (363)
Q Consensus 350 eav~~~ 355 (363)
+|+..+
T Consensus 108 ~Al~~~ 113 (116)
T 1th8_B 108 FALQAL 113 (116)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 998654
No 124
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=35.52 E-value=2.2e+02 Score=24.75 Aligned_cols=120 Identities=14% Similarity=0.117 Sum_probs=61.3
Q ss_pred CCcEEEEecCCcHHHH------HHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCC
Q 017966 209 KGRIWTMVAGGGASVI------YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 282 (363)
Q Consensus 209 ~g~I~ii~NG~G~~~~------~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~ 282 (363)
..+|++++.-.+.... ..+++..+ |..+-.-.-..++.+.+..+++++-+++ .++++++|+.
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~------- 192 (291)
T 3egc_A 125 HTRIGAIVGSAGLMTSRERLKGFRAAMSAA--GLPVRQEWIAAGGVRADNGRDGAIKVLT---GADRPTALLT------- 192 (291)
T ss_dssp CCSEEEECSCTTSHHHHHHHHHHHHHHHHT--TCCCCGGGEEC------CCHHHHHHHHT---C-CCCSEEEE-------
T ss_pred CCEEEEEeCCCCCcCHHHHHHHHHHHHHHc--CCCCCHHHeEeCCCChhHHHHHHHHHHh---CCCCCcEEEE-------
Confidence 3578888655432221 34566665 3332211112244455544555555553 3678888773
Q ss_pred chhHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 017966 283 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 359 (363)
Q Consensus 283 ~~~~vA~~~~giv~a~~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~ 359 (363)
.++.+| .++++++++.+. ++| -|+...+... + +.+. -++.+. .-++.+..+.+++++
T Consensus 193 ~~d~~a---~g~~~al~~~g~-----~vP~di~vvg~d~~~~--~-~~~~-----p~lttv----~~~~~~~g~~av~~l 252 (291)
T 3egc_A 193 SSHRIT---EGAMQALNVLGL-----RYGPDVEIVSFDNLPW--M-AFLD-----PPLPVV----EQPTRRIGQEAMRML 252 (291)
T ss_dssp SSHHHH---HHHHHHHHHHTC-----CBTTTBEEEEESCCGG--G-GGSS-----SCCCEE----ECCHHHHHHHHHHHH
T ss_pred CCcHHH---HHHHHHHHHcCC-----CCCCceEEEEecCchh--H-hhcC-----CCceEE----EECHHHHHHHHHHHH
Confidence 236677 899999998863 333 3555776542 1 1111 234332 457777777777665
Q ss_pred H
Q 017966 360 M 360 (363)
Q Consensus 360 ~ 360 (363)
.
T Consensus 253 ~ 253 (291)
T 3egc_A 253 I 253 (291)
T ss_dssp H
T ss_pred H
Confidence 4
No 125
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=35.30 E-value=2e+02 Score=24.11 Aligned_cols=125 Identities=13% Similarity=0.013 Sum_probs=77.1
Q ss_pred CcEEEEecC------CcHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEe---ccc
Q 017966 210 GRIWTMVAG------GGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI---GGG 280 (363)
Q Consensus 210 g~I~ii~NG------~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~---~g~ 280 (363)
-||+|+..- ..+---+.|.|..+ |.+ .| +|+--=|-+-.+--+++.+.+ ..+.|+++..- -|+
T Consensus 14 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~--Gv~-~~-i~v~~VPGafEiP~aa~~la~----~~~yDavIaLG~VIrG~ 85 (156)
T 1c2y_A 14 FRFAIVVARFNEFVTRRLMEGALDTFKKY--SVN-ED-IDVVWVPGAYELGVTAQALGK----SGKYHAIVCLGAVVKGD 85 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHT--TCC-SC-CEEEEESSHHHHHHHHHHHHH----TTCCSEEEEEEECCCCS
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHc--CCC-Cc-eEEEECCcHHHHHHHHHHHHh----cCCCCEEEEecccccCC
Confidence 456666432 12344477999887 443 32 222222334456666676665 67789877766 388
Q ss_pred CCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 017966 281 IANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 359 (363)
Q Consensus 281 i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvr-l~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~ 359 (363)
...++-|+ +.+.+.+-+..-. ..+||... +.-.|.+++.+. +|... ..-=.||+..+++++
T Consensus 86 T~Hfd~Va---~~v~~gl~~v~L~---~~vPV~~GVLT~~~~eQA~~R-------ag~~~-----~nKG~eaA~aAlem~ 147 (156)
T 1c2y_A 86 TSHYDAVV---NSASSGVLSAGLN---SGVPCVFGVLTCDNMDQAINR-------AGGKA-----GNKGAESALTAIEMA 147 (156)
T ss_dssp STHHHHHH---HHHHHHHHHHHHH---HTSCEEEEEECCSSHHHHHHH-------EEETT-----EEHHHHHHHHHHHHH
T ss_pred chHHHHHH---HHHHHHHHHHHhh---cCCCEEEEEeCCCCHHHHHHH-------cCCcc-----cchHHHHHHHHHHHH
Confidence 88888888 7777776655432 47998777 777787766432 33211 124578888888877
Q ss_pred H
Q 017966 360 M 360 (363)
Q Consensus 360 ~ 360 (363)
+
T Consensus 148 ~ 148 (156)
T 1c2y_A 148 S 148 (156)
T ss_dssp H
T ss_pred H
Confidence 5
No 126
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=34.62 E-value=2.2e+02 Score=24.37 Aligned_cols=119 Identities=10% Similarity=0.076 Sum_probs=67.3
Q ss_pred CcEEEEecCCcHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCc
Q 017966 210 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 283 (363)
Q Consensus 210 g~I~ii~NG~G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~ 283 (363)
.+|++++.-.+... -..+++..+ |.++....-+.++.+.+..+++++-+++ .++.+++|+. .
T Consensus 121 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 188 (275)
T 3d8u_A 121 KNVGFIGARGNHSTLQRQLHGWQSAMIEN--YLTPDHFLTTHEAPSSQLGAEGLAKLLL---RDSSLNALVC-------S 188 (275)
T ss_dssp CCEEEEECSCSSHHHHHHHHHHHHHHHHT--TCCCCCEEECSSCCCHHHHHHHHHHHHT---TCTTCCEEEE-------S
T ss_pred CeEEEEcCCCCCchHHHHHHHHHHHHHHc--CCCCCccEEEeCCCChhHHHHHHHHHHh---CCCCCCEEEE-------c
Confidence 57998875433222 134667665 4333222223456677776676666664 3567887763 2
Q ss_pred hhHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 284 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 284 ~~~vA~~~~giv~a~~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
++.+| .++++++++.+. ++| -|+..++.. .+ +.+. -.+.+. .-++.+..+.+++++.
T Consensus 189 ~d~~a---~g~~~al~~~g~-----~vP~di~vvg~d~~~--~~-~~~~-----p~lttv----~~~~~~~g~~a~~~l~ 248 (275)
T 3d8u_A 189 HEEIA---IGALFECHRRVL-----KVPTDIAIICLEGSS--MG-EHAY-----PSLTSA----EFDYERMGTKAAEKLL 248 (275)
T ss_dssp SHHHH---HHHHHHHHHTTC-----CTTTTCEEEESSCCH--HH-HTSS-----SCCEEE----ECCHHHHHHHHHHHHH
T ss_pred CcHHH---HHHHHHHHHcCC-----CCCCceEEEecCCch--Hh-hhcC-----CCccee----cCCHHHHHHHHHHHHH
Confidence 46677 899999998762 334 455677653 22 1221 233332 3567777777776653
No 127
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=33.31 E-value=52 Score=29.39 Aligned_cols=41 Identities=7% Similarity=0.163 Sum_probs=32.5
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEE
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIV 62 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~ 62 (363)
||.+..+.+++.++.+++.. . -..++||++++ +.|+.+.+.
T Consensus 153 gv~~v~~~~el~~~~~~~~~-----~-----~~~~lvee~i~-g~e~~v~~~ 193 (306)
T 1iow_A 153 GMSKVVAENALQDALRLAFQ-----H-----DEEVLIEKWLS-GPEFTVAIL 193 (306)
T ss_dssp TCEEESSGGGHHHHHHHHTT-----T-----CSEEEEEECCC-CCEEEEEEE
T ss_pred CEEEeCCHHHHHHHHHHHHh-----h-----CCCEEEEeCcC-CEEEEEEEE
Confidence 68888899998888776642 1 14799999998 789999887
No 128
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=33.24 E-value=2.4e+02 Score=24.62 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=47.3
Q ss_pred CcEEEEecCC-cHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCC
Q 017966 210 GRIWTMVAGG-GASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 282 (363)
Q Consensus 210 g~I~ii~NG~-G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~ 282 (363)
++|++++.-. +... -..+++..+ |-+.....-+-++.+.+.-+++++-+++ ..+.+++|+.
T Consensus 134 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~------- 201 (289)
T 2fep_A 134 TDIAFVSGPMAEPINRSKKLQGYKRALEEA--NLPFNEQFVAEGDYTYDSGLEALQHLMS---LDKKPTAILS------- 201 (289)
T ss_dssp SSEEEEESCTTSHHHHTTHHHHHHHHHHHT--TCCCCGGGEEECCSCHHHHHHHHHHHTT---SSSCCSEEEE-------
T ss_pred CeEEEEeCCccccccHHHHHHHHHHHHHHc--CCCCChheEeeCCCCHHHHHHHHHHHHc---CCCCCCEEEE-------
Confidence 6799887543 3322 145677775 4332211112355667766666666664 3567887773
Q ss_pred chhHHhhhHHHHHHHHHHhh
Q 017966 283 NFTDVATTFNGIIRALREKE 302 (363)
Q Consensus 283 ~~~~vA~~~~giv~a~~~~~ 302 (363)
.++.+| .++++++++.+
T Consensus 202 ~~d~~A---~g~~~al~~~G 218 (289)
T 2fep_A 202 ATDEMA---LGIIHAAQDQG 218 (289)
T ss_dssp SSHHHH---HHHHHHHHHTT
T ss_pred CCHHHH---HHHHHHHHHcC
Confidence 246677 89999999876
No 129
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=33.08 E-value=1.1e+02 Score=27.97 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=39.6
Q ss_pred EEEEe-cccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-------------eCCCCHHHHHHHHHhhccccCCc
Q 017966 273 RALLI-GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-------------RGGPNYQTGLAKMRALGEELGIP 338 (363)
Q Consensus 273 vlv~~-~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvr-------------l~G~~~~~~~~~l~~~~~~~Gip 338 (363)
++|+. |-.+-+-+.+- -+++.+++...+. ..++++-| ..|...++|.++|++++++.|+|
T Consensus 4 l~viaGPCsie~~~~~~----~~A~~l~~~~~~~--~~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~l~~~~~e~Glp 77 (267)
T 2nwr_A 4 FLVIAGPNAIESEELLL----KVGEEIKRLSEKF--KEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLK 77 (267)
T ss_dssp EEEEEECSBCSCHHHHH----HHHHHHHHHHHHC--TTEEEEEECBSCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCE
T ss_pred cEEEEcCCCcCCHHHHH----HHHHHHHHHHHhh--cCccEEEeeccccCCCCCCCCCcCccHHHHHHHHHHHHHhcCCe
Confidence 34455 88887755443 3444455443321 13565555 44555799999999999999999
Q ss_pred ee
Q 017966 339 LE 340 (363)
Q Consensus 339 ~~ 340 (363)
+.
T Consensus 78 ~~ 79 (267)
T 2nwr_A 78 IT 79 (267)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 130
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=33.05 E-value=2.6e+02 Score=24.83 Aligned_cols=121 Identities=11% Similarity=-0.016 Sum_probs=66.4
Q ss_pred CCcEEEEecCCcHHH------HHHHHHHhcCCCCCCCceee-ccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccC
Q 017966 209 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAE-YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 281 (363)
Q Consensus 209 ~g~I~ii~NG~G~~~------~~~D~l~~~g~gg~paN~lD-~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i 281 (363)
.++|++++.-.+... -..+.+... +... ..+. .-++-+.+...++++-+|+ .+|++++|+.
T Consensus 128 ~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~aI~~------ 195 (316)
T 1tjy_A 128 KAKVAFFYSSPTVTDQNQWVKEAKAKISQE--HPGW-EIVTTQFGYNDATKSLQTAEGIIK---AYPDLDAIIA------ 195 (316)
T ss_dssp SEEEEEEESCSSCHHHHHHHHHHHHHHHHH--CTTE-EEEEEEECTTCHHHHHHHHHHHHH---HCSSCCEEEE------
T ss_pred CCEEEEEEcCCCChhHHHHHHHHHHHHHhh--CCCc-EEEEeccCCCCHHHHHHHHHHHHH---hCCCCCEEEE------
Confidence 467888864333221 134566543 2111 1121 2245567766666665554 3677887763
Q ss_pred CchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccC-CceeecCCCCCHHHHHHHHHHHhH
Q 017966 282 ANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELG-IPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 282 ~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~G-ip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
.++.+| .|+++++++.+ . ..+ .|+...+ ..+..+.+. .| +.+.+ .-++.+..+.+++++.
T Consensus 196 -~nD~~A---~g~~~al~~~G-~---~dv-~VvG~D~--~~~~~~~i~-----~g~l~ttv---~~~~~~~g~~a~~~l~ 256 (316)
T 1tjy_A 196 -PDANAL---PAAAQAAENLK-R---NNL-AIVGFST--PNVMRPYVQ-----RGTVKEFG---LWDVVQQGKISVYVAN 256 (316)
T ss_dssp -CSTTHH---HHHHHHHHHTT-C---CSC-EEEEBCC--HHHHHHHHH-----HTSCSEEE---ECCHHHHHHHHHHHHH
T ss_pred -CCCccH---HHHHHHHHHcC-C---CCE-EEEEeCC--CHHHHHHHH-----CCCccEEE---ecCHHHHHHHHHHHHH
Confidence 236677 89999999876 2 233 3444554 345566665 35 43333 3467776666666553
No 131
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=32.65 E-value=2.5e+02 Score=27.37 Aligned_cols=44 Identities=18% Similarity=0.046 Sum_probs=27.4
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCc--eeeeEEEEeeecCCC
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCK--GPITTFIVEPFVPHN 54 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~--~~v~gvLVe~~~~~~ 54 (363)
||.+..|.+|+.++++++.........+. ..-..++||++++..
T Consensus 189 Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~ 234 (474)
T 3vmm_A 189 GVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGE 234 (474)
T ss_dssp TCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBC
T ss_pred eEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCc
Confidence 56778888888888777654322100010 112689999999854
No 132
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=32.50 E-value=57 Score=29.11 Aligned_cols=50 Identities=12% Similarity=0.255 Sum_probs=33.1
Q ss_pred CCCCCeEEEEe--cccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEe---CCCCHHHHHHHHH
Q 017966 267 DPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRR---GGPNYQTGLAKMR 329 (363)
Q Consensus 267 ~~~v~~vlv~~--~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl---~G~~~~~~~~~l~ 329 (363)
++++++|++-+ |||.... . ..|.+.++. .++||++.+ +|.-...|--++-
T Consensus 36 ~~~~~~Ivl~inspGG~v~~---~---~~i~~~i~~-------~~~PVia~v~p~~G~AasaG~~ia~ 90 (230)
T 3viv_A 36 QDNAEAIIIELDTPGGRADA---M---MNIVQRIQQ-------SKIPVIIYVYPPGASAASAGTYIAL 90 (230)
T ss_dssp HTTCSEEEEEEEBSCEEHHH---H---HHHHHHHHT-------CSSCEEEEECSTTCEEETHHHHHHH
T ss_pred cCCCCEEEEEEeCCCcCHHH---H---HHHHHHHHh-------CCCCEEEEEecCCCEEhHHHHHHHH
Confidence 34688877654 8875321 1 566666654 368999999 8877677766664
No 133
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=32.37 E-value=16 Score=34.39 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=32.8
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEE
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 72 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~ 72 (363)
||.+..|.+|+.++.+ ..++||++++.+.|+-+.+..|..+.+..+
T Consensus 148 Gv~~v~~~~el~~~~~----------------~~~lvEe~i~~g~e~sv~~~~~~~G~~~~~ 193 (380)
T 3ax6_A 148 GVFIIKNEKDLENAIK----------------GETYLEEFVEIEKELAVMVARNEKGEIACY 193 (380)
T ss_dssp -EEEECSGGGGGGCCC----------------SSEEEEECCCEEEEEEEEEEECSSCCEEEE
T ss_pred CeEEECCHHHHHHHhc----------------CCEEEEeccCCCeeEEEEEEECCCCCEEEE
Confidence 6777777776543211 569999999878999999999976655444
No 134
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=32.23 E-value=2.5e+02 Score=25.05 Aligned_cols=118 Identities=9% Similarity=0.062 Sum_probs=66.0
Q ss_pred CcEEEEecCC-cHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCC
Q 017966 210 GRIWTMVAGG-GASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 282 (363)
Q Consensus 210 g~I~ii~NG~-G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~ 282 (363)
.+|++++.-. +... -..+++..+ |-+.....-+-++.+.+.-+++++-+|+ .++.+++|+.
T Consensus 178 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~------- 245 (332)
T 2hsg_A 178 KNIAFVSGTLEEPINHAKKVKGYKRALTES--GLPVRDSYIVEGDYTYDSGIEAVEKLLE---EDEKPTAIFV------- 245 (332)
T ss_dssp SCEEEEESCTTSHHHHTTHHHHHHHHHHTT--TCCCCGGGEEECCSSHHHHHHHHHHHHH---SSSCCSEEEE-------
T ss_pred CEEEEEeCCcccCccHHHHHHHHHHHHHHc--CCCCChheEEeCCCCHHHHHHHHHHHHc---CCCCCeEEEE-------
Confidence 5798886543 3221 245777775 4332211122355677766666666665 3567887773
Q ss_pred chhHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 017966 283 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 359 (363)
Q Consensus 283 ~~~~vA~~~~giv~a~~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~ 359 (363)
.++.+| -|+++++++.+. ++| -|+...+... + +.+. -.+.+. .-++.+..+.+++++
T Consensus 246 ~nd~~A---~g~~~al~~~G~-----~vP~disvvg~D~~~~--~-~~~~-----p~lttv----~~~~~~~g~~a~~~l 305 (332)
T 2hsg_A 246 GTDEMA---LGVIHGAQDRGL-----NVPNDLEIIGFDNTRL--S-TMVR-----PQLTSV----VQPMYDIGAVAMRLL 305 (332)
T ss_dssp SSHHHH---HHHHHHHHHTTC-----CHHHHCEEEEESCCGG--G-GSSS-----SCCEEE----ECCHHHHHHHHHHHH
T ss_pred CChHHH---HHHHHHHHHcCC-----CCCCCeEEEEECChHH--H-hccC-----CceeEE----ECCHHHHHHHHHHHH
Confidence 246777 899999998762 333 3455666542 1 1111 133222 346666666666654
No 135
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=32.12 E-value=2.5e+02 Score=24.35 Aligned_cols=119 Identities=7% Similarity=0.058 Sum_probs=68.3
Q ss_pred CcEEEEecCCcHHHH------HHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCc
Q 017966 210 GRIWTMVAGGGASVI------YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 283 (363)
Q Consensus 210 g~I~ii~NG~G~~~~------~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~ 283 (363)
.+|++++.-.+.... ..+++..+ |........+.++.+.+..+++++-+++ ..|..++|+. .
T Consensus 128 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 195 (288)
T 3gv0_A 128 KRIAVIVPPSRFSFHDHARKGFNRGIRDF--GLTEFPIDAVTIETPLEKIRDFGQRLMQ---SSDRPDGIVS-------I 195 (288)
T ss_dssp CEEEEECCCTTSHHHHHHHHHHHHHHHHT--TCEECCCCSCCTTSCHHHHHHHHHHHTT---SSSCCSEEEE-------S
T ss_pred CeEEEEcCCcccchHHHHHHHHHHHHHHc--CCCcchhheeccccchHHHHHHHHHHHh---CCCCCcEEEE-------c
Confidence 568888654433221 34666664 3322211224566677777777666664 3577887773 2
Q ss_pred hhHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 284 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 284 ~~~vA~~~~giv~a~~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
++.+| .++++++++.+. ++| -|+...+.... +.+. -.+.+. .-++.+..+.+++++.
T Consensus 196 ~d~~A---~g~~~al~~~g~-----~vP~di~vig~d~~~~~---~~~~-----p~lttv----~~~~~~~g~~a~~~l~ 255 (288)
T 3gv0_A 196 SGSST---IALVAGFEAAGV-----KIGEDVDIVSKQSAEFL---NWIK-----PQIHTV----NEDIKLAGRELAKALL 255 (288)
T ss_dssp CHHHH---HHHHHHHHTTTC-----CTTTSCEEEEEESSTTH---HHHC-----TTSEEE----ECCHHHHHHHHHHHHH
T ss_pred CcHHH---HHHHHHHHHcCC-----CCCCceEEEEecChHHH---hccC-----CCceEE----ecCHHHHHHHHHHHHH
Confidence 36777 899999998763 333 45557765421 1221 234332 4577777777777654
No 136
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=31.98 E-value=2.1e+02 Score=25.75 Aligned_cols=119 Identities=8% Similarity=-0.011 Sum_probs=64.9
Q ss_pred CCcEEEEecCCcHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCC
Q 017966 209 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 282 (363)
Q Consensus 209 ~g~I~ii~NG~G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~ 282 (363)
..+|++++.-.+... -..+++..+ |-......-+-++.+.+.-+++++-+|+ .++..++|+.
T Consensus 177 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~------- 244 (340)
T 1qpz_A 177 HREIGVIPGPLERNTGAGRLAGFMKAMEEA--MIKVPESWIVQGDFEPESGYRAMQQILS---QPHRPTAVFC------- 244 (340)
T ss_dssp CCCEEEECCCTTSHHHHHHHHHHHHHHHHT--TCCCCGGGBCCCCSSHHHHHHHHHHHHT---SSSCCSEEEE-------
T ss_pred CCEEEEEeCCCccccHHHHHHHHHHHHHHC--CCCCChhheEeCCCCHHHHHHHHHHHHc---CCCCCcEEEE-------
Confidence 357888854333221 144677765 3332211123455567766666666665 2567887773
Q ss_pred chhHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 017966 283 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 359 (363)
Q Consensus 283 ~~~~vA~~~~giv~a~~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~ 359 (363)
.++.+| .|+++++++.+. ++| -|+...+... + +.+. -++.+. .-++.+..+.+++++
T Consensus 245 ~nd~~A---~g~~~al~~~G~-----~vP~disvig~D~~~~--~-~~~~-----p~lttv----~~~~~~~g~~a~~~l 304 (340)
T 1qpz_A 245 GGDIMA---MGALCAADEMGL-----RVPQDVSLIGYDNVRN--A-RYFT-----PALTTI----HQPKDSLGETAFNML 304 (340)
T ss_dssp SSHHHH---HHHHHHHHHTTC-----CTTTTCEEEEEECCTT--G-GGSS-----SCCEEE----ECCHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHHcCC-----CCCCCeEEEeECCchH--h-hccC-----CceeEE----ecCHHHHHHHHHHHH
Confidence 246777 899999998762 333 3455666542 1 2222 234332 346666666666554
No 137
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=30.56 E-value=2.2e+02 Score=24.86 Aligned_cols=121 Identities=6% Similarity=-0.055 Sum_probs=64.2
Q ss_pred CCcEEEEecCCcHHH------HHHHHHHhcCCCCCCC-ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccC
Q 017966 209 KGRIWTMVAGGGASV------IYADTVGDLGYASELG-NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 281 (363)
Q Consensus 209 ~g~I~ii~NG~G~~~------~~~D~l~~~g~gg~pa-N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i 281 (363)
..+|++++.-.+... -..+++..+ |-+.. .++ +-++.+.+.-+++++-+++ .++.+++|+.
T Consensus 128 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~-~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~------ 195 (290)
T 2rgy_A 128 HRKLAVISGPFTASDNVERLDGFFDELARH--GIARDSVPL-IESDFSPEGGYAATCQLLE---SKAPFTGLFC------ 195 (290)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHHHHHHHTT--TCCGGGSCE-EECCSSHHHHHHHHHHHHH---HTCCCSEEEE------
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHc--CCCCCcccE-EecCCChhHHHHHHHHHHh---CCCCCcEEEE------
Confidence 367998875433221 134666664 33321 222 2355666666666666554 2577888773
Q ss_pred CchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 017966 282 ANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 359 (363)
Q Consensus 282 ~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~ 359 (363)
.++.+| .++++++++.+.. .|..+ -|+...+... + +.+. -.+.+. .-++.+..+.+++++
T Consensus 196 -~~d~~A---~g~~~al~~~G~~-vP~di-~vvg~D~~~~--~-~~~~-----p~lttv----~~~~~~~g~~a~~~l 255 (290)
T 2rgy_A 196 -ANDTMA---VSALARFQQLGIS-VPGDV-SVIGYDDDYS--A-AYAA-----PALTSV----HIPTAELTQNAVRWL 255 (290)
T ss_dssp -SSHHHH---HHHHHHHHHTTCC-TTTTC-EEEEEECCTT--S-TTSS-----SCCEEE----ECCHHHHHHHHHHHH
T ss_pred -CCcHHH---HHHHHHHHHcCCC-CCCce-EEEEeCCchH--h-cccC-----CCceEE----eCCHHHHHHHHHHHH
Confidence 246777 8999999987621 01122 3445666542 1 1121 233222 346666666666654
No 138
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=30.38 E-value=1.2e+02 Score=23.85 Aligned_cols=78 Identities=9% Similarity=-0.020 Sum_probs=43.5
Q ss_pred CCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecC---CCC
Q 017966 270 GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYG---PEA 346 (363)
Q Consensus 270 v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~---~~~ 346 (363)
.+.++++ +++++..+..+. ..+.+..++... ....+ ++.|.+ ..-+++|+. +|+.- .+| .|.
T Consensus 52 ~~~vvlD-ls~v~~iDssgl--~~L~~~~~~~~~----~g~~l--~l~~~~-~~v~~~l~~----~gl~~-~~~~~~i~~ 116 (135)
T 4dgf_A 52 PKVFILR-MRRVPVIDATGM--HALWEFQESCEK----RGTIL--LLSGVS-DRLYGALNR----FGFIE-ALGEERVFD 116 (135)
T ss_dssp CSEEEEE-CTTCSCBCHHHH--HHHHHHHHHHHH----HTCEE--EEESCC-HHHHHHHHH----HTHHH-HHCGGGBCS
T ss_pred CcEEEEE-cCCCCccCHHHH--HHHHHHHHHHHH----CCCEE--EEEcCC-HHHHHHHHH----cCChh-hcCccceeC
Confidence 3434433 566666665442 566666555542 23333 344544 345667764 45421 111 278
Q ss_pred CHHHHHHHHHHHhHhc
Q 017966 347 TMTGICKQAIDCIMSA 362 (363)
Q Consensus 347 ~~~eav~~~~~~~~~~ 362 (363)
|.++|+..+-+...+|
T Consensus 117 t~~~Al~~~~~~~~~~ 132 (135)
T 4dgf_A 117 HIDKALAYAKLLVETA 132 (135)
T ss_dssp SHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHhhh
Confidence 9999999998877765
No 139
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=30.25 E-value=2.7e+02 Score=24.05 Aligned_cols=121 Identities=8% Similarity=0.069 Sum_probs=67.8
Q ss_pred CcEEEEecCCcHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCc
Q 017966 210 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 283 (363)
Q Consensus 210 g~I~ii~NG~G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~ 283 (363)
.+|++++.-.+... -..+++..+ |..+....-+.++.+.+..+++++-+|+ .++.+++|+. .
T Consensus 128 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 195 (289)
T 3g85_A 128 KSAAAILTESLNDAMDNRNKGFIETCHKN--GIKISENHIIAAENSIHGGVDAAKKLMK---LKNTPKALFC-------N 195 (289)
T ss_dssp CBCEEEECCCSSHHHHHHHHHHHHHHHHT--TCBCCGGGEEECCSSHHHHHHHHHHHTT---SSSCCSEEEE-------S
T ss_pred CEEEEEeCCcccccHHHHHHHHHHHHHHc--CCCCChhheeccCCCHHHHHHHHHHHHc---CCCCCcEEEE-------c
Confidence 56888765433222 134666665 3332221223566677777777666664 4677887773 2
Q ss_pred hhHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 284 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 284 ~~~vA~~~~giv~a~~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
++.+| .++++++++.+. ++| -|+..+.++...+ +.+. -.+.+. .-++.+..+.+++++.
T Consensus 196 ~d~~a---~g~~~al~~~g~-----~vP~di~vig~d~~~~~~~-~~~~-----p~lttv----~~~~~~~g~~a~~~l~ 257 (289)
T 3g85_A 196 SDSIA---LGVISVLNKRQI-----SIPDDIEIVAIGMNDREYT-EFST-----PPVTIV----DIPIEEMAGTCISLVE 257 (289)
T ss_dssp SHHHH---HHHHHHHHHTTC-----CTTTTCEEEEEECSCHHHH-HSSS-----SCCEEE----ECCHHHHHHHHHHHHH
T ss_pred CCHHH---HHHHHHHHHcCC-----CCCCceEEEEeCCCCcchh-hccC-----CCCeEE----cCCHHHHHHHHHHHHH
Confidence 46777 899999998863 333 3555663333322 1111 234332 4577777777777653
No 140
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=30.14 E-value=1.1e+02 Score=28.62 Aligned_cols=60 Identities=18% Similarity=0.265 Sum_probs=36.1
Q ss_pred EEEe-cccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-------------eCCCCHHHHHHHHHhhccccCCce
Q 017966 274 ALLI-GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-------------RGGPNYQTGLAKMRALGEELGIPL 339 (363)
Q Consensus 274 lv~~-~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvr-------------l~G~~~~~~~~~l~~~~~~~Gip~ 339 (363)
+++. |-.+-+-+.+- -+++.+++...+ ..++++.+ ..|...++|.++|++++++.|+|+
T Consensus 43 ~vIaGPCsies~e~~~----~~A~~lk~~~~~---~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~GLpv 115 (298)
T 3fs2_A 43 ALIAGPCQMETRDHAF----EMAGRLKEMTDK---LGIGLVYKSSFDKANRTSLKAARGIGLEKALEVFSDLKKEYGFPV 115 (298)
T ss_dssp EEEEECSBCCCHHHHH----HHHHHHHHHHHH---HTCCEEEECBCCCCC---------CCHHHHHHHHHHHHHHHCCCE
T ss_pred EEEEeCCcCCCHHHHH----HHHHHHHHHHHH---cCCcEEEEcccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeE
Confidence 3444 88887655443 344444443321 12444443 446667899999999999999998
Q ss_pred e
Q 017966 340 E 340 (363)
Q Consensus 340 ~ 340 (363)
.
T Consensus 116 ~ 116 (298)
T 3fs2_A 116 L 116 (298)
T ss_dssp E
T ss_pred E
Confidence 4
No 141
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=29.48 E-value=1.3e+02 Score=22.57 Aligned_cols=74 Identities=11% Similarity=-0.015 Sum_probs=40.1
Q ss_pred CCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCH
Q 017966 269 DGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATM 348 (363)
Q Consensus 269 ~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~ 348 (363)
..+.++++. ++++..+... ...++...+.... ....+ ++.|.+ ..-+++|+. +|+.-.+ .++|.
T Consensus 41 ~~~~vvlDl-s~v~~iDssg--l~~L~~~~~~~~~----~g~~l--~l~~~~-~~v~~~l~~----~gl~~~~--i~~~~ 104 (117)
T 1h4x_A 41 AVTTIIWNF-ERLSFMDSSG--VGLVLGRMRELEA----VAGRT--ILLNPS-PTMRKVFQF----SGLGPWM--MDATE 104 (117)
T ss_dssp SCSEEEEEE-EEEEEECTHH--HHHHHHHHHHHHT----TTCEE--EEESCC-HHHHHHHHH----TTCGGGE--ECSCH
T ss_pred CCCEEEEEC-CCCcEechHH--HHHHHHHHHHHHH----cCCEE--EEEeCC-HHHHHHHHH----hCCceEE--EeCCH
Confidence 445554444 5555444433 2555665555432 23343 344544 456788875 6654332 48899
Q ss_pred HHHHHHHHHH
Q 017966 349 TGICKQAIDC 358 (363)
Q Consensus 349 ~eav~~~~~~ 358 (363)
++|+..+-+.
T Consensus 105 ~~Al~~~~~~ 114 (117)
T 1h4x_A 105 EEAIDRVRGI 114 (117)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHHHh
Confidence 9999776443
No 142
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=29.39 E-value=78 Score=23.97 Aligned_cols=42 Identities=7% Similarity=-0.112 Sum_probs=30.5
Q ss_pred EEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHH
Q 017966 273 RALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMR 329 (363)
Q Consensus 273 vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~~~~l~ 329 (363)
|.+.-|....++ +.|++.+++ ++||++-+.+...+.|+|++.
T Consensus 7 Ivv~~P~sy~Da-------~~I~d~Lr~--------~~~VvvNL~~ld~~~AqRivD 48 (87)
T 3p04_A 7 IVPVELHSFEDA-------QVIGGAFRD--------GDAVVFDMSLLSREEARRIVD 48 (87)
T ss_dssp CEEEECSSGGGH-------HHHHHHHHT--------TCCEEEECTTSCHHHHHHHHH
T ss_pred EEEEecCcHHHH-------HHHHHHHHC--------CCEEEEECCCCCHHHHHHHHH
Confidence 344457655443 556666654 578999999999999999985
No 143
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=28.93 E-value=1.3e+02 Score=22.74 Aligned_cols=64 Identities=9% Similarity=0.027 Sum_probs=34.8
Q ss_pred cccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHH
Q 017966 278 GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQA 355 (363)
Q Consensus 278 ~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~ 355 (363)
+++.+..+... ...++...+..+. ...++.++ |.+ ..-+++|+-.+...-+++ ++|.++|+..+
T Consensus 49 ls~v~~iDssg--l~~L~~~~~~~~~----~g~~l~l~--~~~-~~v~~~l~~~gl~~~~~i-----~~~~~~Al~~~ 112 (117)
T 4hyl_A 49 LREVSYMSSAG--LRVLLSLYRHTSN----QQGALVLV--GVS-EEIRDTMEITGFWNFFTA-----CASMDEALRIL 112 (117)
T ss_dssp EEEEEEECHHH--HHHHHHHHHHHHH----TTCEEEEE--CCC-HHHHHHHHHHTCGGGCEE-----ESCHHHHHHHH
T ss_pred CCCCcEEcHHH--HHHHHHHHHHHHH----cCCEEEEE--eCC-HHHHHHHHHhCccceeee-----cCCHHHHHHHh
Confidence 55665555543 2555555555432 24444443 443 456677775333333343 68999998765
No 144
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=28.83 E-value=2.4e+02 Score=24.25 Aligned_cols=91 Identities=9% Similarity=-0.031 Sum_probs=49.9
Q ss_pred CcEEEEecCCcHH------HHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCc
Q 017966 210 GRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 283 (363)
Q Consensus 210 g~I~ii~NG~G~~------~~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~ 283 (363)
.+|++++.-.+.. --..+++..+ |.+.....-.-++.+.+..+++++-+++ .++++++|+. .
T Consensus 127 ~~i~~i~~~~~~~~~~~R~~g~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 194 (289)
T 1dbq_A 127 REIGVIPGPLERNTGAGRLAGFMKAMEEA--MIKVPESWIVQGDFEPESGYRAMQQILS---QPHRPTAVFC-------G 194 (289)
T ss_dssp CSEEEECCC------CHHHHHHHHHHHHT--TCCCCGGGBCCCCSSHHHHHHHHHHHHT---SSSCCSEEEE-------S
T ss_pred CeEEEEecCCccccHHHHHHHHHHHHHHC--CCCCChHHeEeCCCCHHHHHHHHHHHHh---CCCCCCEEEE-------C
Confidence 5677775332211 1144677765 4333211122345566666666665554 3577887763 2
Q ss_pred hhHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCC
Q 017966 284 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPN 320 (363)
Q Consensus 284 ~~~vA~~~~giv~a~~~~~~~~~~~~~p---vvvrl~G~~ 320 (363)
++.+| .++++++++.+. ++| -|+..++..
T Consensus 195 ~d~~a---~g~~~al~~~G~-----~vP~di~vvg~d~~~ 226 (289)
T 1dbq_A 195 GDIMA---MGALCAADEMGL-----RVPQDVSLIGYDNVR 226 (289)
T ss_dssp CHHHH---HHHHHHHHHTTC-----CTTTTCEEEEEECCT
T ss_pred CcHHH---HHHHHHHHHcCC-----CCCCceEEEeeCCch
Confidence 36677 899999998762 233 345566654
No 145
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=28.78 E-value=3.1e+02 Score=24.34 Aligned_cols=50 Identities=8% Similarity=0.030 Sum_probs=35.7
Q ss_pred cceEEEEeCCCCHHHHHHHHHhhcccc-CCceeecCCCCCHHHHHHHHHHHhHhc
Q 017966 309 RMHIFVRRGGPNYQTGLAKMRALGEEL-GIPLEVYGPEATMTGICKQAIDCIMSA 362 (363)
Q Consensus 309 ~~pvvvrl~G~~~~~~~~~l~~~~~~~-Gip~~~~~~~~~~~eav~~~~~~~~~~ 362 (363)
++|+|+.--|-+.+ -.+.|+++++++ ++|+.+ -.++.--+..++++++++
T Consensus 69 g~~~VigTTG~~~e-~~~~l~~aa~~~~~~~vv~---a~N~siGv~ll~~l~~~a 119 (245)
T 1p9l_A 69 GIHAVVGTTGFTAE-RFQQVESWLVAKPNTSVLI---APNFAIGAVLSMHFAKQA 119 (245)
T ss_dssp TCEEEECCCCCCHH-HHHHHHHHHHTSTTCEEEE---CSCCCHHHHHHHHHHHHH
T ss_pred CCCEEEcCCCCCHH-HHHHHHHHHHhCCCCCEEE---ECCccHHHHHHHHHHHHH
Confidence 68899987676654 445666665555 888744 567788888888888775
No 146
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=28.78 E-value=3.2e+02 Score=24.45 Aligned_cols=78 Identities=14% Similarity=-0.011 Sum_probs=48.2
Q ss_pred CcEEEEecCCcHHH-----HHHHHHHhcCCCCCC-CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCc
Q 017966 210 GRIWTMVAGGGASV-----IYADTVGDLGYASEL-GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 283 (363)
Q Consensus 210 g~I~ii~NG~G~~~-----~~~D~l~~~g~gg~p-aN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~ 283 (363)
.+|++++.-..... -..+++..+ |..+ ...+-..++.+.+.-+++++-+|+ .+|.+++|+. .
T Consensus 179 ~~I~~i~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~ 246 (339)
T 3h5o_A 179 RRIGFLGAQLDERVMKRLDGYRAALDAA--DCRDAGLEWLDPQPSSMQMGADMLDRALA---ERPDCDALFC-------C 246 (339)
T ss_dssp CSEEEEEESCCHHHHHHHHHHHHHHHHT--TCCCGGGEEEECSCCCHHHHHHHHHHHHH---HCTTCCEEEE-------S
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHHC--CCCCCChheEecCCCCHHHHHHHHHHHHc---CCCCCcEEEE-------C
Confidence 57998864432221 134666665 4322 222233566777777777776665 2677887763 3
Q ss_pred hhHHhhhHHHHHHHHHHhh
Q 017966 284 FTDVATTFNGIIRALREKE 302 (363)
Q Consensus 284 ~~~vA~~~~giv~a~~~~~ 302 (363)
++.+| -|+++++++.+
T Consensus 247 nD~~A---~g~~~al~~~G 262 (339)
T 3h5o_A 247 NDDLA---IGALARSQQLG 262 (339)
T ss_dssp SHHHH---HHHHHHHHHTT
T ss_pred ChHHH---HHHHHHHHHcC
Confidence 47777 89999999886
No 147
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=28.31 E-value=1.7e+02 Score=22.31 Aligned_cols=74 Identities=11% Similarity=0.041 Sum_probs=39.0
Q ss_pred CCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCC
Q 017966 268 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEAT 347 (363)
Q Consensus 268 ~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~ 347 (363)
...+.++++ .++.+-.+-.. ...++...+..+.. ...+++++ |.+ ..-+++|+- +|+.- .|..++|
T Consensus 46 ~~~~~vvlD-ls~v~~iDSsG--l~~L~~~~~~~~~~---~g~~l~l~--~~~-~~v~~~l~~----~gl~~-~~~i~~~ 111 (121)
T 3t6o_A 46 AQPRKVLID-LEGVEFFGSSF--IELLVRGWKRIKED---QQGVFALC--SVS-PYCVEVLQV----THIDE-VWPRYST 111 (121)
T ss_dssp SSSCEEEEE-CTTCCEECHHH--HHHHHHHHHHHTTS---TTCEEEEE--SCC-HHHHHHHTT----CSGGG-GSCEESS
T ss_pred cCCCeEEEE-CCCCCEEcHHH--HHHHHHHHHHHHHh---cCCEEEEE--eCC-HHHHHHHHH----hCccc-eecccCC
Confidence 344544444 55666555533 25555555554320 23444443 443 456788875 45422 2233789
Q ss_pred HHHHHHHH
Q 017966 348 MTGICKQA 355 (363)
Q Consensus 348 ~~eav~~~ 355 (363)
.++|+..+
T Consensus 112 ~~~Al~~~ 119 (121)
T 3t6o_A 112 KQEALLAM 119 (121)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998764
No 148
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=28.02 E-value=2.6e+02 Score=26.34 Aligned_cols=30 Identities=33% Similarity=0.513 Sum_probs=21.4
Q ss_pred eCCCCHHH----HHHHHHhhccccCCceeecCCC
Q 017966 316 RGGPNYQT----GLAKMRALGEELGIPLEVYGPE 345 (363)
Q Consensus 316 l~G~~~~~----~~~~l~~~~~~~Gip~~~~~~~ 345 (363)
+.|.+.++ |+++=++++++.++|+|.||.-
T Consensus 95 l~~~tmeec~~lA~~~g~~i~~~l~VPVyLYg~A 128 (325)
T 1qd1_A 95 VRGVTMDECVRCAQAFGQRLAEELGVPVYLYGEA 128 (325)
T ss_dssp EESCCHHHHHHHHHHHHHHHHHHHTCCEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhcCCcEEeehhh
Confidence 56667766 5555566666789999999843
No 149
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=27.71 E-value=89 Score=31.82 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCeEEEEe--cc-cC-CchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHH
Q 017966 248 PNEEEVLQYARVVIDCATADPDGRKRALLI--GG-GI-ANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT 323 (363)
Q Consensus 248 a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~--~g-~i-~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~ 323 (363)
.+.+.+..+++-..+ |+++++|++.+ || |- +.+ +.|-++++..+. .++|+++.... ...
T Consensus 70 ~~~~~i~~~L~~a~~----d~~ik~I~L~inspGgG~v~~~-------~~I~~~i~~~k~----~gkpvva~~~~--aas 132 (593)
T 3bf0_A 70 NSLFDIVNTIRQAKD----DRNITGIVMDLKNFAGGDQPSM-------QYIGKALKEFRD----SGKPVYAVGEN--YSQ 132 (593)
T ss_dssp EEHHHHHHHHHHHHH----CTTCCCEEEECTEEEECCHHHH-------HHHHHHHHHHHH----TTCCEEEEESC--EEH
T ss_pred cCHHHHHHHHHHHHh----CCCceEEEEEeCCCCCCcHHHH-------HHHHHHHHHHHh----cCCeEEEEEcc--chh
Confidence 567888888877776 99999999888 66 32 222 556666766653 35888886433 344
Q ss_pred HHHHHH
Q 017966 324 GLAKMR 329 (363)
Q Consensus 324 ~~~~l~ 329 (363)
+-=.|.
T Consensus 133 ~~y~lA 138 (593)
T 3bf0_A 133 GQYYLA 138 (593)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 150
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=27.50 E-value=3.1e+02 Score=23.89 Aligned_cols=123 Identities=7% Similarity=-0.044 Sum_probs=0.0
Q ss_pred CCcEEEEecCCcHHHH------HHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCC
Q 017966 209 KGRIWTMVAGGGASVI------YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 282 (363)
Q Consensus 209 ~g~I~ii~NG~G~~~~------~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~ 282 (363)
.++|++++...+.... ..+++..+ |-+. ...-++.+.+...++++-+|+ .+|++++|+ +
T Consensus 130 ~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~--g~~~---~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~-------~ 194 (297)
T 3rot_A 130 AKRALVLNPQPGHIGLEKRAYGIKTILQDK--GIFF---EELDVGTDPNQVQSRVKSYFK---IHPETNIIF-------C 194 (297)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHT--TCEE---EEEECCSCHHHHHHHHHHHHH---HCTTCCEEE-------E
T ss_pred CceEEEEeCCCCcHHHHHHHHHHHHHHHhc--CCeE---EEeecCCChHHHHHHHHHHHH---hCCCCCEEE-------E
Q ss_pred chhHHhhhHHHHHHHHHHhhhhhhcccceE--EEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 283 NFTDVATTFNGIIRALREKESKLKAARMHI--FVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 283 ~~~~vA~~~~giv~a~~~~~~~~~~~~~pv--vvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
.++.+| .|+++++++.+ ..+|= +.-.|-.+...+...+. .|.+.... .-++.+....+++++.
T Consensus 195 ~~d~~A---~g~~~al~~~g-----~~vP~~dv~vig~D~~~~~~~~i~-----~~~~lttv--~~~~~~~g~~av~~l~ 259 (297)
T 3rot_A 195 LTSQAL---DPLGQMLLHPD-----RYDFNYQPQVYSFDKTPNTVSLIH-----KKLVNYVM--DQQPFLMGYLSITQLV 259 (297)
T ss_dssp SSHHHH---HHHHHHHHSHH-----HHTCCCCCEEEEECCCHHHHHHHH-----TTSCCEEE--CCCHHHHHHHHHHHHH
T ss_pred cCCcch---HHHHHHHHhcC-----CccCCCceEEEEeCCCHHHHHHHH-----cCCceEEE--ecChHHHHHHHHHHHH
Q ss_pred h
Q 017966 361 S 361 (363)
Q Consensus 361 ~ 361 (363)
.
T Consensus 260 ~ 260 (297)
T 3rot_A 260 L 260 (297)
T ss_dssp H
T ss_pred H
No 151
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=26.69 E-value=2.4e+02 Score=27.14 Aligned_cols=49 Identities=29% Similarity=0.385 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhhhhcccceEEEEeCCCCHH---------HHHHHHHhhccccCCceeecCCCCCHHHHHHHH
Q 017966 292 NGIIRALREKESKLKAARMHIFVRRGGPNYQ---------TGLAKMRALGEELGIPLEVYGPEATMTGICKQA 355 (363)
Q Consensus 292 ~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~---------~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~ 355 (363)
.++.+.+++. .+|++ |++.+ ..++.|+ ++|||+--|..+++.+++...+
T Consensus 97 ~~~~~~l~~~-------Gi~~~----Gp~~~a~~~~~dK~~~k~~l~----~~GIp~p~~~~~~~~~ea~~~~ 154 (442)
T 3lp8_A 97 NGLSDALTEE-------GILVF----GPSKAAARLESSKGFTKELCM----RYGIPTAKYGYFVDTNSAYKFI 154 (442)
T ss_dssp TTHHHHHHHT-------TCEEE----SCCHHHHHHHHCHHHHHHHHH----HHTCCBCCEEEESSHHHHHHHH
T ss_pred HHHHHHHHhc-------CCcEe----cCCHHHHHHhhCHHHHHHHHH----HCCCCCCCEEEECCHHHHHHHH
Confidence 5666666654 35554 33333 3345555 4899985554567888876544
No 152
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=26.63 E-value=2.4e+02 Score=24.99 Aligned_cols=95 Identities=7% Similarity=0.071 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhccc-ceEEEEeCCCCHHHH
Q 017966 246 GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAAR-MHIFVRRGGPNYQTG 324 (363)
Q Consensus 246 G~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~-~pvvvrl~G~~~~~~ 324 (363)
++.+.+.-+++++-+|+....+|++++|+ ..++.+| -|+++++++.+.. .+.. +++++...+. ..+
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-------~~nd~~A---~g~~~al~~~g~~-vP~d~i~vv~g~D~~--~~~ 247 (330)
T 3uug_A 181 LRWDPATAQARMDNLLSAYYTDAKVDAVL-------SPYDGLS---IGIISSLKGVGYG-TKDQPLPVVSGQDAE--VPS 247 (330)
T ss_dssp GGGCHHHHHHHHHHHHHHHCSSSCCCEEE-------CSSHHHH---HHHHHHHHHTTCS-SSSSCCCEECCSSCC--HHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCeEEEE-------ECCCchH---HHHHHHHHHcCCC-CCCCceEEEEecCCC--HHH
Confidence 45556666666666664110137788766 2346777 8999999988631 0111 3444445543 455
Q ss_pred HHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 325 LAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 325 ~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
...++ .|-+.... .-++.+....+++++.
T Consensus 248 ~~~i~-----~~~~lttv--~~~~~~~g~~a~~~l~ 276 (330)
T 3uug_A 248 VKSII-----AGEQYSTI--FKDTRELAKVTVNMVN 276 (330)
T ss_dssp HHHHH-----TTSSCCEE--ECCHHHHHHHHHHHHH
T ss_pred HHHHH-----cCCceEEE--ecCHHHHHHHHHHHHH
Confidence 55555 23322111 3567776666666553
No 153
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=26.50 E-value=3e+02 Score=23.35 Aligned_cols=102 Identities=11% Similarity=0.077 Sum_probs=57.1
Q ss_pred HHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhh
Q 017966 225 YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESK 304 (363)
Q Consensus 225 ~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~ 304 (363)
...++..+|+ +-.++|-+.+++.+.++++-. +| +.|.+-. .++....-. +.+++.+++...
T Consensus 108 va~~l~~~G~-----~v~~LG~~vp~~~l~~~~~~~------~~--d~v~lS~--~~~~~~~~~---~~~i~~l~~~~~- 168 (210)
T 1y80_A 108 VAMMLESGGF-----TVYNLGVDIEPGKFVEAVKKY------QP--DIVGMSA--LLTTTMMNM---KSTIDALIAAGL- 168 (210)
T ss_dssp HHHHHHHTTC-----EEEECCSSBCHHHHHHHHHHH------CC--SEEEEEC--CSGGGTHHH---HHHHHHHHHTTC-
T ss_pred HHHHHHHCCC-----EEEECCCCCCHHHHHHHHHHc------CC--CEEEEec--cccccHHHH---HHHHHHHHhcCC-
Confidence 3456666532 457889999999888874332 34 4455433 222222222 667777776531
Q ss_pred hhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 017966 305 LKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 359 (363)
Q Consensus 305 ~~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~ 359 (363)
..+.||++ ||....+ +..++ .|.-.+ ..+..+|++.+-++.
T Consensus 169 --~~~~~v~v--GG~~~~~--~~~~~----~gad~~----~~da~~av~~~~~l~ 209 (210)
T 1y80_A 169 --RDRVKVIV--GGAPLSQ--DFADE----IGADGY----APDAASATELCRQLL 209 (210)
T ss_dssp --GGGCEEEE--ESTTCCH--HHHHH----HTCSEE----CSSHHHHHHHHHHHC
T ss_pred --CCCCeEEE--ECCCCCH--HHHHH----cCCeEE----ECCHHHHHHHHHHHh
Confidence 02355555 4533322 22232 565443 689999999887764
No 154
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=26.48 E-value=2e+02 Score=25.96 Aligned_cols=119 Identities=15% Similarity=0.097 Sum_probs=67.6
Q ss_pred CcEEEEecCC--cHHH-----HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCC
Q 017966 210 GRIWTMVAGG--GASV-----IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 282 (363)
Q Consensus 210 g~I~ii~NG~--G~~~-----~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~ 282 (363)
.+|++++... .... -..+++..+ |-.+....-+.++.+.+.-+++++-+|+ .+|.+++|+.
T Consensus 186 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~------- 253 (344)
T 3kjx_A 186 RRIGFMGTKMPLDYRARKRFEGFTEVLGKN--GVEIEDREFYSGGSALAKGREMTQAMLE---RSPDLDFLYY------- 253 (344)
T ss_dssp CSCCEEESSTTTCHHHHHHHHHHHHHHHHT--TCCCSCEEECSSCCCHHHHHHHHHHHHH---HSTTCCEEEE-------
T ss_pred CeEEEEecCcccCccHHHHHHHHHHHHHHc--CCCCChheEEeCCCCHHHHHHHHHHHHh---cCCCCCEEEE-------
Confidence 4677776442 1111 145677775 4443333334577777777777766664 3677887773
Q ss_pred chhHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 017966 283 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 359 (363)
Q Consensus 283 ~~~~vA~~~~giv~a~~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~ 359 (363)
.++.+| -|+++++++.+. ++| -|+...+... + +.+. -.+.+. .-++++..+.++++.
T Consensus 254 ~nd~~A---~g~~~al~~~g~-----~vP~disvvg~D~~~~--~-~~~~-----p~lttv----~~~~~~~g~~av~~l 313 (344)
T 3kjx_A 254 SNDMIA---AGGLLYLLEQGI-----DIPGQIGLAGFNNVEL--L-QGLP-----RKLATM----DACRLEIGRKAAEII 313 (344)
T ss_dssp SSHHHH---HHHHHHHHHTTC-----CTTTTCEEECSBCCGG--G-GGSS-----SCCBEE----BCCHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHHcCC-----CCCCceEEEEECChHH--H-hccC-----CCccEE----eCCHHHHHHHHHHHH
Confidence 246777 899999998863 344 3444666431 1 1111 123322 456777777776665
Q ss_pred H
Q 017966 360 M 360 (363)
Q Consensus 360 ~ 360 (363)
.
T Consensus 314 ~ 314 (344)
T 3kjx_A 314 A 314 (344)
T ss_dssp H
T ss_pred H
Confidence 3
No 155
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=26.22 E-value=3.6e+02 Score=24.31 Aligned_cols=107 Identities=10% Similarity=0.040 Sum_probs=68.7
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 017966 240 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 319 (363)
Q Consensus 240 N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~ 319 (363)
-|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+.. .. |++-.|++
T Consensus 9 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~v~~~~~~~~-----~g--ViaGvg~~ 75 (288)
T 2nuw_A 9 TPFDKQGKVNVDALKTHAKNLLE-----KGIDAIFVNGTTGLGPALSKDE-KRQNLNALYDVT-----HK--LIFQVGSL 75 (288)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCCEEEETSTTTTGGGSCHHH-HHHHHHHHTTTC-----SC--EEEECCCS
T ss_pred cCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHh-----CC--eEEeeCCC
Confidence 34554688999999999999885 6899988877444332222221 134555544432 12 88889999
Q ss_pred CHHHHHHHHHhhccccCC------ceeecCCC-CCHHHHHHHHHHHhHhc
Q 017966 320 NYQTGLAKMRALGEELGI------PLEVYGPE-ATMTGICKQAIDCIMSA 362 (363)
Q Consensus 320 ~~~~~~~~l~~~~~~~Gi------p~~~~~~~-~~~~eav~~~~~~~~~~ 362 (363)
+..++.+..+.+ +++|. |-++| - .|.++.++.+-.++.+.
T Consensus 76 ~t~~ai~la~~A-~~~Gadavlv~~P~y~--~~~s~~~l~~~f~~va~a~ 122 (288)
T 2nuw_A 76 NLNDVMELVKFS-NEMDILGVSSHSPYYF--PRLPEKFLAKYYEEIARIS 122 (288)
T ss_dssp CHHHHHHHHHHH-HTSCCSEEEECCCCSS--CSCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH-HhcCCCEEEEcCCcCC--CCCCHHHHHHHHHHHHHhc
Confidence 999998877653 24552 22222 3 48888888888887653
No 156
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=26.15 E-value=1.2e+02 Score=28.05 Aligned_cols=60 Identities=12% Similarity=0.165 Sum_probs=38.4
Q ss_pred EEEe-cccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-------------eCCCCHHHHHHHHHhhccccCCce
Q 017966 274 ALLI-GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-------------RGGPNYQTGLAKMRALGEELGIPL 339 (363)
Q Consensus 274 lv~~-~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvr-------------l~G~~~~~~~~~l~~~~~~~Gip~ 339 (363)
+++. |-.+-+-+.+- -+++.+++...+ ..++++.+ ..|...++|.++|++++++.|+|+
T Consensus 22 ~viaGPCsie~~e~~~----~~A~~lk~~~~~---~~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~L~~~~~e~Glp~ 94 (285)
T 3sz8_A 22 VLFGGINVLESLDFTL----DVCGEYVAVTRK---LGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFAEVKARFGVPV 94 (285)
T ss_dssp EEEEEEEECCCHHHHH----HHHHHHHHHHHH---HTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCCE
T ss_pred EEEEeCCcCCCHHHHH----HHHHHHHHHHHh---heeeeEEEeecccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeE
Confidence 3444 77777654443 344445544322 23565554 346667899999999999999998
Q ss_pred e
Q 017966 340 E 340 (363)
Q Consensus 340 ~ 340 (363)
.
T Consensus 95 ~ 95 (285)
T 3sz8_A 95 I 95 (285)
T ss_dssp E
T ss_pred E
Confidence 4
No 157
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=26.12 E-value=3.1e+02 Score=23.46 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=68.6
Q ss_pred CCcEEEEecCCcHH----HHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCch
Q 017966 209 KGRIWTMVAGGGAS----VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANF 284 (363)
Q Consensus 209 ~g~I~ii~NG~G~~----~~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~ 284 (363)
..+|++++...+.. --..+++..+ |..+ ....+.++.+.+.-+++++-+|+ .+|.+++|+. .+
T Consensus 118 ~~~i~~i~~~~~~~~~R~~gf~~~l~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~~ 184 (280)
T 3gyb_A 118 HTHIAHLRVGSGAGLRRFESFEATMRAH--GLEP-LSNDYLGPAVEHAGYTETLALLK---EHPEVTAIFS-------SN 184 (280)
T ss_dssp CCSEEEECCSSHHHHHHHHHHHHHHHHT--TCCC-EECCCCSCCCHHHHHHHHHHHHH---HCTTCCEEEE-------SS
T ss_pred CCeEEEEeCCCchHHHHHHHHHHHHHHc--CcCC-CcccccCCCCHHHHHHHHHHHHh---CCCCCCEEEE-------CC
Confidence 35788887655430 1133566664 3333 22226677777777777666665 3678887773 23
Q ss_pred hHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 285 TDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 285 ~~vA~~~~giv~a~~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
+.+| .++++++++.+. ++| -|+...+.. .+ +.+. -++.+. .-++.+....+++++.
T Consensus 185 d~~a---~g~~~al~~~g~-----~vP~di~vvg~d~~~--~~-~~~~-----p~lttv----~~~~~~~g~~av~~l~ 243 (280)
T 3gyb_A 185 DITA---IGALGAARELGL-----RVPEDLSIIGYDNTP--LA-QTRL-----INLTTI----DDNSIGVGYNAALLLL 243 (280)
T ss_dssp HHHH---HHHHHHHHHHTC-----CTTTTCEEEEESCCH--HH-HSTT-----TCCCEE----ECCHHHHHHHHHHHHH
T ss_pred hHHH---HHHHHHHHHcCC-----CCCCeeEEEEECCch--Hh-hccC-----CCceEE----ecCHHHHHHHHHHHHH
Confidence 6677 899999998863 233 455577643 11 1221 234332 3567776666666554
No 158
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=26.04 E-value=3.1e+02 Score=23.50 Aligned_cols=120 Identities=11% Similarity=0.085 Sum_probs=65.2
Q ss_pred CCcEEEEecCCcHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCC
Q 017966 209 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 282 (363)
Q Consensus 209 ~g~I~ii~NG~G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~ 282 (363)
.++|++++.-.+... -..+.+..+ |.+.....-+.++.+.+.-+++++-+++ .++++++|+.
T Consensus 139 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~------- 206 (296)
T 3brq_A 139 HQEIAFLTGSMDSPTSIERLAGYKDALAQH--GIALNEKLIANGKWTPASGAEGVEMLLE---RGAKFSALVA------- 206 (296)
T ss_dssp CCSEEEECCCTTCHHHHHHHHHHHHHHHTT--TCCCCGGGEECCCSSHHHHHHHHHHHHT---C--CCSEEEE-------
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHHc--CCCCChhhEEeCCCChhHHHHHHHHHHh---CCCCCCEEEE-------
Confidence 367888865433211 134667665 4433221113455667766666666664 3577887763
Q ss_pred chhHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 017966 283 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 359 (363)
Q Consensus 283 ~~~~vA~~~~giv~a~~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~ 359 (363)
.++.+| .++++++++.+. ++| -|+...+... + +.+. -.+.+. .-++.+....+++++
T Consensus 207 ~~d~~a---~g~~~al~~~g~-----~vP~di~vvg~d~~~~--~-~~~~-----p~lttv----~~~~~~~g~~a~~~l 266 (296)
T 3brq_A 207 SNDDMA---IGAMKALHERGV-----AVPEQVSVIGFDDIAI--A-PYTV-----PALSSV----KIPVTEMIQEIIGRL 266 (296)
T ss_dssp SSHHHH---HHHHHHHHHHTC-----CTTTTCEEEEESCCTT--G-GGSS-----SCCEEE----ECCHHHHHHHHHHHH
T ss_pred CChHHH---HHHHHHHHHcCC-----CCCCceEEEeecCchh--h-hccC-----CCceee----eCCHHHHHHHHHHHH
Confidence 236677 899999998762 233 4555666542 1 1221 234332 356777777776655
Q ss_pred H
Q 017966 360 M 360 (363)
Q Consensus 360 ~ 360 (363)
.
T Consensus 267 ~ 267 (296)
T 3brq_A 267 I 267 (296)
T ss_dssp H
T ss_pred H
Confidence 3
No 159
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=25.08 E-value=1.8e+02 Score=30.46 Aligned_cols=97 Identities=12% Similarity=0.133 Sum_probs=57.2
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 017966 240 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 319 (363)
Q Consensus 240 N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~ 319 (363)
.-+|+|.+.+++.+.+++ . ..+++.|.+-. -.+...+.. ..+++.+++.+. .. +.+-.||.
T Consensus 626 eVi~lG~~v~~eeiv~aA---~-----e~~adiVglSs--l~~~~~~~~---~~vi~~L~~~G~----~~--i~VivGG~ 686 (727)
T 1req_A 626 DVDVGPLFQTPEETARQA---V-----EADVHVVGVSS--LAGGHLTLV---PALRKELDKLGR----PD--ILITVGGV 686 (727)
T ss_dssp EEEECCTTBCHHHHHHHH---H-----HTTCSEEEEEE--CSSCHHHHH---HHHHHHHHHTTC----TT--SEEEEEES
T ss_pred EEEeCCCCCCHHHHHHHH---H-----HcCCCEEEEee--ecHhHHHHH---HHHHHHHHhcCC----CC--CEEEEcCC
Confidence 447889999999877662 3 23555454433 233333333 778888887652 13 44445662
Q ss_pred CHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 320 NYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 320 ~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
...+-...+++ .|+.- +|++-++..+.+....+...
T Consensus 687 ~p~~d~~~l~~----~GaD~-~f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 687 IPEQDFDELRK----DGAVE-IYTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp CCGGGHHHHHH----TTEEE-EECTTCCHHHHHHHHHHHHH
T ss_pred CccccHHHHHh----CCCCE-EEcCCccHHHHHHHHHHHHH
Confidence 22222234554 78764 45556888888888877653
No 160
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=24.87 E-value=43 Score=35.38 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=32.5
Q ss_pred eEEee----CCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeC
Q 017966 11 LVALN----LDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 65 (363)
Q Consensus 11 GV~l~----~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~ 65 (363)
||.++ .|.+++.++.+..+. . -..|+||++++ ++|+-+.+..|+
T Consensus 540 GV~iv~~~v~~~eel~~al~~a~~-----~-----~~~vlVEefI~-G~Ei~v~Vlggk 587 (757)
T 3ln7_A 540 GITIFQQGVQNREDFAKALEIAFR-----E-----DKEVMVEDYLV-GTEYRFFVLGDE 587 (757)
T ss_dssp TCEECSSCCCCHHHHHHHHHHHHH-----H-----CSSEEEEECCC-SEEEEEEEETTE
T ss_pred CeEEecCCCCCHHHHHHHHHHHHh-----c-----CCcEEEEEcCC-CcEEEEEEECCE
Confidence 77777 799999888776542 1 13599999997 589888776543
No 161
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=24.40 E-value=2.9e+02 Score=25.29 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEecccCCc------hhHHhhhHHHHHHHHHHhhhhh---hcccceEEEEeCCC
Q 017966 250 EEEVLQYARVVIDCATADPDGRKRALLIGGGIAN------FTDVATTFNGIIRALREKESKL---KAARMHIFVRRGGP 319 (363)
Q Consensus 250 ~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~------~~~vA~~~~giv~a~~~~~~~~---~~~~~pvvvrl~G~ 319 (363)
.+.|.++++.+- +..+++-+|+....++ ..... ..+++++++..... ....+||++++...
T Consensus 152 ~~~~~~aa~~~~------~g~d~iein~~sP~~~g~~~~~~~~~~---~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~ 221 (336)
T 1f76_A 152 KDDYLICMEKIY------AYAGYIAINISSPNTPGLRTLQYGEAL---DDLLTAIKNKQNDLQAMHHKYVPIAVKIAPD 221 (336)
T ss_dssp HHHHHHHHHHHG------GGCSEEEEECCCSSSTTGGGGGSHHHH---HHHHHHHHHHHHHHHHHHTSCCCEEEECCSC
T ss_pred HHHHHHHHHHHh------ccCCEEEEEccCCCCCCcccccCHHHH---HHHHHHHHHHHHhhhhcccccCceEEEecCC
Confidence 788888877652 2678888887333222 11112 45666666543110 01268999997653
No 162
>2php_A Uncharacterized protein MJ0236; chlorine ION, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.03A {Methanocaldococcus jannaschii DSM2661} SCOP: c.74.1.2
Probab=24.30 E-value=3.5e+02 Score=23.39 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=16.8
Q ss_pred eecCCCCCHHHHHHHHHHHhHh
Q 017966 340 EVYGPEATMTGICKQAIDCIMS 361 (363)
Q Consensus 340 ~~~~~~~~~~eav~~~~~~~~~ 361 (363)
++|| .++.|+++++.++++.
T Consensus 161 ~vfG--~dp~ev~~kv~~l~~~ 180 (192)
T 2php_A 161 RVLG--RDAIEVVKKVEVIQKI 180 (192)
T ss_dssp EEEE--SSHHHHHHHHHHHHHH
T ss_pred EEEC--CCHHHHHHHHHHHHHH
Confidence 5775 8999999999998864
No 163
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=24.22 E-value=65 Score=30.66 Aligned_cols=53 Identities=8% Similarity=0.031 Sum_probs=35.2
Q ss_pred CeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCC
Q 017966 10 GLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 66 (363)
Q Consensus 10 GGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~ 66 (363)
-||.++.|.+|+.+++++++..... + ..+...++|||+++ +.|+......++.
T Consensus 164 kGv~v~~s~ee~~~a~~~~~~~~~~--~-~~~~~~viIEEfl~-G~e~s~~~f~~~~ 216 (361)
T 2r7k_A 164 RGYFIASSTEEFYKKAEDLKKRGIL--T-DEDIANAHIEEYVV-GTNFCIHYFYSPL 216 (361)
T ss_dssp --EEEESSHHHHHHHHHHHHHTTSC--C-HHHHHHCEEEECCC-SEEEEEEEEEETT
T ss_pred CCEEEECCHHHHHHHHHHHHhcccc--c-cCCCCeEEEEeccc-eEEeeEEEEeccc
Confidence 4799999999999999888754321 0 11124689999998 6777644455554
No 164
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=24.02 E-value=1.4e+02 Score=27.48 Aligned_cols=75 Identities=9% Similarity=0.016 Sum_probs=42.2
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEE--EEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 017966 241 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRA--LLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 318 (363)
Q Consensus 241 ~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vl--v~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G 318 (363)
-+-++|..+.+........++.+-..|+ .+.|+ ||.|||-.. -+ ..|.++++.. +.||++.++|
T Consensus 84 II~l~G~I~d~~a~~iiaqL~~l~~ed~-~k~I~L~INSPGGsV~---ag---~aIyd~I~~~-------k~pV~t~v~G 149 (277)
T 1tg6_A 84 IVCVMGPIDDSVASLVIAQLLFLQSESN-KKPIHMYINSPGGVVT---AG---LAIYDTMQYI-------LNPICTWCVG 149 (277)
T ss_dssp EEEEESSBCHHHHHHHHHHHHHHHHHCS-SSCEEEEEEECCBCHH---HH---HHHHHHHHHS-------CSCEEEEEEE
T ss_pred EEEEcCEECHHHHHHHHHHHHHHHhcCC-CCCEEEEEECCCCCHH---HH---HHHHHHHHhc-------CCCEEEEEcc
Confidence 3566777776655555544443212244 45544 444888642 12 6777777765 4678887777
Q ss_pred CCHHHHHHHHH
Q 017966 319 PNYQTGLAKMR 329 (363)
Q Consensus 319 ~~~~~~~~~l~ 329 (363)
.-+..|-=++.
T Consensus 150 ~AASaG~~Ia~ 160 (277)
T 1tg6_A 150 QAASMGSLLLA 160 (277)
T ss_dssp EEETHHHHHHH
T ss_pred EeHHHHHHHHH
Confidence 55555544443
No 165
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=23.74 E-value=2e+02 Score=25.36 Aligned_cols=41 Identities=12% Similarity=-0.036 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEe-cccCCchhHHhhhHHHHHHHH
Q 017966 250 EEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTDVATTFNGIIRAL 298 (363)
Q Consensus 250 ~e~~~~a~~~ll~~~~~~~~v~~vlv~~-~g~i~~~~~vA~~~~giv~a~ 298 (363)
-+.+.+++..+++ ++...++ .|+ -+......+++ +.+.+++
T Consensus 195 v~Dva~a~~~~~~----~~~~~g~-yn~~~~~~~t~~e~~---~~ia~~l 236 (298)
T 4b4o_A 195 IGDLAGILTHALE----ANHVHGV-LNGVAPSSATNAEFA---QTFGAAL 236 (298)
T ss_dssp HHHHHHHHHHHHH----CTTCCEE-EEESCSCCCBHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHh----CCCCCCe-EEEECCCccCHHHHH---HHHHHHh
Confidence 5777888777777 7777775 455 33333445666 6665554
No 166
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=23.48 E-value=82 Score=29.60 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=34.3
Q ss_pred eEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEe
Q 017966 11 LVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSD 64 (363)
Q Consensus 11 GV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D 64 (363)
||.+..|.+|+.++++++..... -..++||++++ +.|+.+.+..+
T Consensus 159 Gv~~v~~~~el~~~~~~~~~~~~--------~~~~lvEe~i~-g~e~sv~~~~~ 203 (403)
T 4dim_A 159 GIYIAKKEEEAIDGFNETMNLTK--------RDYCIVEEFIE-GYEFGAQAFVY 203 (403)
T ss_dssp -CEEESSHHHHHHHHHHHHHHCS--------SSCCEEEECCC-SEEEEEEEEEE
T ss_pred CEEEECCHHHHHHHHHHHHhcCc--------CCcEEEEEccC-CcEEEEEEEEE
Confidence 68888999999998887764321 24689999998 57998888764
No 167
>3i0p_A Malate dehydrogenase; araerobic parasitic protozoan, amoebic dysentery, ssgcid, NI infectious disease, structural genomics; HET: NAD; 2.60A {Entamoeba histolytica}
Probab=23.43 E-value=1.2e+02 Score=29.04 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=33.7
Q ss_pred CCCCeEEEEe-cccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCce
Q 017966 268 PDGRKRALLI-GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPL 339 (363)
Q Consensus 268 ~~v~~vlv~~-~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~ 339 (363)
+++--.++-| |....+.++..+.++.+++.++...+.- -..| ||+.|..+...++.-. +.|||+
T Consensus 280 ~~~g~~~iaIdP~~f~~~~~f~~~~~~~~~~l~~~~~~~--g~~~--v~~PGe~e~~~~~~~~----~~GI~l 344 (365)
T 3i0p_A 280 FSLGHFFIAINVECFRDLNEFKKNVGDINRTLRNTDKLP--GHDR--IYTAGEKEYETEQKRR----KFGDDL 344 (365)
T ss_dssp CCEEEEEEEEEGGGTSCHHHHHHHHHHHHHHHHTSCCCT--TCCC--CCCTTHHHHHHHHHHH----HHCEEE
T ss_pred CcceEEEEEEChHHcCCHHHHHHHHHHHHHHHhcCCCCC--CCCc--eeCCChHHHHHHHHHH----ccCccc
Confidence 3443345555 7777665555544466777776643110 0112 5777855544444332 369998
No 168
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=22.87 E-value=3.8e+02 Score=23.82 Aligned_cols=116 Identities=10% Similarity=0.120 Sum_probs=64.0
Q ss_pred CcEEEEecCCcHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCc
Q 017966 210 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 283 (363)
Q Consensus 210 g~I~ii~NG~G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~ 283 (363)
.+|++++.-.+... -..+++..+ |-+.....-+-++.+.+.-+++++-+++ . ..++|+. .
T Consensus 181 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~----~-~~~ai~~-------~ 246 (332)
T 2o20_A 181 KKIAYIMGSLKDVENTERMVGYQEALLEA--NIEFDENLVFEGNYSYEQGKALAERLLE----R-GATSAVV-------S 246 (332)
T ss_dssp SSEEEECSCTTSHHHHHHHHHHHHHHHHT--TCCCCGGGEECSCCSHHHHHHHHHHHHH----T-TCCEEEE-------S
T ss_pred CeEEEEeCCcccccHHHHHHHHHHHHHHc--CCCCChhhEEeCCCCHHHHHHHHHHHhc----c-CCCEEEE-------C
Confidence 57998865433221 134677775 4332211123456677777777777776 3 5666663 2
Q ss_pred hhHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 017966 284 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 359 (363)
Q Consensus 284 ~~~vA~~~~giv~a~~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~ 359 (363)
++.+| -|+++++++.+. ++| -|+...+... + +.+. -.+.+. .-++.+..+.++++.
T Consensus 247 ~d~~A---~g~~~al~~~G~-----~vP~disvig~D~~~~--~-~~~~-----p~lttv----~~~~~~~g~~a~~~l 305 (332)
T 2o20_A 247 HDTVA---VGLLSAMMDKGV-----KVPEDFEIISGANSPI--T-QYTY-----PTLTSV----NQPLYDLGAVAMRLL 305 (332)
T ss_dssp CHHHH---HHHHHHHHHTTC-----CTTTTCEEEESSCCGG--G-GSBS-----SCCEEE----ECCHHHHHHHHHHHH
T ss_pred ChHHH---HHHHHHHHHcCC-----CCccCEEEEEeCChHH--H-hhCC-----CceEEE----eeCHHHHHHHHHHHH
Confidence 46777 899999998762 333 3455666432 1 1111 133221 346666666666654
No 169
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=22.85 E-value=4.2e+02 Score=23.88 Aligned_cols=102 Identities=11% Similarity=0.059 Sum_probs=62.3
Q ss_pred HHHHHHhcCCCCCCC-ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhh
Q 017966 225 YADTVGDLGYASELG-NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKES 303 (363)
Q Consensus 225 ~~D~l~~~g~gg~pa-N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~ 303 (363)
..+++..+ |-.+. .++-..++.+.+.-+++++.+|+ .++..++|+. .++.+| -|+++++++.+.
T Consensus 228 f~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~nD~~A---~g~~~al~~~G~ 292 (366)
T 3h5t_A 228 AMEVFIEA--GIDPGTVPIMECWINNRQHNFEVAKELLE---THPDLTAVLC-------TVDALA---FGVLEYLKSVGK 292 (366)
T ss_dssp HHHHHHHH--TCCGGGSCEEEESSCCHHHHHHHHHHHHH---HCTTCCEEEE-------SSHHHH---HHHHHHHHHTTC
T ss_pred HHHHHHHC--CCCCCcceEEEcCCCCHHHHHHHHHHHHc---CCCCCcEEEE-------CCcHHH---HHHHHHHHHcCC
Confidence 45777776 43322 13334566777777777777665 2677887773 246777 899999998863
Q ss_pred hhhcccce---EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 304 KLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 304 ~~~~~~~p---vvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
++| -|+.+.+... +. . .++.+. .-++.+..+.+++++.
T Consensus 293 -----~vP~disvigfD~~~~--~~---~-----~~lttv----~q~~~~~G~~Av~~L~ 333 (366)
T 3h5t_A 293 -----SAPADLSLTGFDGTHM--AL---A-----RDLTTV----IQPNKLKGFKAGETLL 333 (366)
T ss_dssp -----CTTTTCEEEEEECCHH--HH---H-----TTCCEE----ECCHHHHHHHHHHHHH
T ss_pred -----CCCCceEEEEECCChh--hc---C-----CCccEE----EeCHHHHHHHHHHHHH
Confidence 333 3556776532 22 1 234432 4577777777776653
No 170
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=22.12 E-value=5.3e+02 Score=25.51 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=21.3
Q ss_pred CCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 017966 267 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 320 (363)
Q Consensus 267 ~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~ 320 (363)
+|.++.|. |.|- +.+. +.|.++..+ +-+|++.-+||.+
T Consensus 238 ~p~vd~I~---FTGS---~~~G---~~i~~~aa~-------~lk~v~lELGGk~ 275 (528)
T 3u4j_A 238 DPNVDMVA---FTGS---VRVG---TKLGEIAAR-------TVKRVGLELGGKG 275 (528)
T ss_dssp CTTCCEEE---EESC---HHHH---HHHHHHHHT-------TTCEEEEECCCCE
T ss_pred CCCcCEEE---EeCC---HHHH---HHHHHHHHh-------cCCceEEecCCCC
Confidence 77777433 3332 3344 666654433 2467777788854
No 171
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=21.85 E-value=3.8e+02 Score=22.98 Aligned_cols=119 Identities=11% Similarity=-0.012 Sum_probs=68.3
Q ss_pred CcEEEEecCCcHHHH------HHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCc
Q 017966 210 GRIWTMVAGGGASVI------YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 283 (363)
Q Consensus 210 g~I~ii~NG~G~~~~------~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~ 283 (363)
.+|++++...+.... ..+++..+ |.......-..++.+.+..+++++-+|+ .+|.+++|+. .
T Consensus 132 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 199 (292)
T 3k4h_A 132 KQIAFIGGGSDLLVTRDRLAGMSDALKLA--DIVLPKEYILHFDFSRESGQQAVEELMG---LQQPPTAIMA-------T 199 (292)
T ss_dssp CCEEEEESCTTBHHHHHHHHHHHHHHHHT--TCCCCGGGEEECCSSHHHHHHHHHHHHT---SSSCCSEEEE-------S
T ss_pred ceEEEEeCcccchhHHHHHHHHHHHHHHc--CCCCChheEEecCCCHHHHHHHHHHHHc---CCCCCcEEEE-------c
Confidence 579988765443221 34667765 4332221223456677777777666665 3678887773 2
Q ss_pred hhHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 284 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 284 ~~~vA~~~~giv~a~~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
++.+| .++++++++.+. ++| -|+...+.. .+ +.+. -.+.+. .-++.+..+.+++++.
T Consensus 200 ~d~~a---~g~~~al~~~g~-----~vP~di~vig~d~~~--~~-~~~~-----p~lttv----~~~~~~~g~~av~~l~ 259 (292)
T 3k4h_A 200 DDLIG---LGVLSALSKKGF-----VVPKDVSIVSFNNAL--LS-EIAS-----PPLSTV----DVNIYQLGYEAAKALV 259 (292)
T ss_dssp SHHHH---HHHHHHHHHTTC-----CTTTTCEEEEESCCH--HH-HHSS-----SCCEEE----ECCHHHHHHHHHHHHH
T ss_pred ChHHH---HHHHHHHHHhCC-----CCCCeEEEEEecCcc--hh-hccC-----CCceEE----ecCHHHHHHHHHHHHH
Confidence 46777 899999998863 333 355577642 22 1221 234332 3577777777776654
No 172
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=21.74 E-value=3.1e+02 Score=24.33 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHH
Q 017966 220 GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALR 299 (363)
Q Consensus 220 G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~ 299 (363)
|+-| ...++..+|+ .-+|+|-+.+++.+.++++-. +| +.|.+-.. ++....-. ..+++.++
T Consensus 139 G~~i-va~~L~~~G~-----~Vi~LG~~vp~e~l~~~~~~~------~~--d~V~lS~l--~~~~~~~~---~~~i~~l~ 199 (258)
T 2i2x_B 139 GKNI-VTALLRANGY-----NVVDLGRDVPAEEVLAAVQKE------KP--IMLTGTAL--MTTTMYAF---KEVNDMLL 199 (258)
T ss_dssp HHHH-HHHHHHHTTC-----EEEEEEEECCSHHHHHHHHHH------CC--SEEEEECC--CTTTTTHH---HHHHHHHH
T ss_pred HHHH-HHHHHHHCCC-----EEEECCCCCCHHHHHHHHHHc------CC--CEEEEEee--ccCCHHHH---HHHHHHHH
Confidence 4434 3456666533 457899999999887764332 44 44544332 22222222 66777777
Q ss_pred HhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 017966 300 EKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360 (363)
Q Consensus 300 ~~~~~~~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~ 360 (363)
+.+ .+.||+ +||.-..+. +.+ +.|.-. | ..+..++++.+.++.+
T Consensus 200 ~~~-----~~~~v~--vGG~~~~~~---~~~---~igad~--~--~~da~~av~~~~~l~~ 243 (258)
T 2i2x_B 200 ENG-----IKIPFA--CGGGAVNQD---FVS---QFALGV--Y--GEEAADAPKIADAIIA 243 (258)
T ss_dssp TTT-----CCCCEE--EESTTCCHH---HHH---TSTTEE--E--CSSTTHHHHHHHHHHT
T ss_pred hcC-----CCCcEE--EECccCCHH---HHH---HcCCeE--E--ECCHHHHHHHHHHHHc
Confidence 654 234544 455433221 221 356433 3 4688899988887764
No 173
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=21.72 E-value=4.4e+02 Score=23.81 Aligned_cols=95 Identities=14% Similarity=0.226 Sum_probs=53.6
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCc---hhHHhhhHHHHHHHHHHhhhhhhcccceEEEEe
Q 017966 240 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN---FTDVATTFNGIIRALREKESKLKAARMHIFVRR 316 (363)
Q Consensus 240 N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~---~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl 316 (363)
+-+|+|-+.+++.+.++++ ..+.+.|.+-.. ++. ...-. ..+++.+++.+.. .++| +..
T Consensus 159 eVi~LG~~vp~e~iv~aa~--------e~~~d~VglS~l--~t~~~~~~~~~---~~~i~~L~~~g~~---~~i~--viv 220 (262)
T 1xrs_B 159 DAYNLGSQVANEDFIKKAV--------ELEADVLLVSQT--VTQKNVHIQNM---THLIELLEAEGLR---DRFV--LLC 220 (262)
T ss_dssp EEEECCSSBCHHHHHHHHH--------HTTCSEEEEECC--CCTTSHHHHHH---HHHHHHHHHTTCG---GGSE--EEE
T ss_pred EEEECCCCCCHHHHHHHHH--------HcCCCEEEEEee--cCCccchHHHH---HHHHHHHHhcCCC---CCCE--EEE
Confidence 3489999999998877732 235555655442 222 22222 5667777765310 1234 456
Q ss_pred CCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 017966 317 GGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 359 (363)
Q Consensus 317 ~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~ 359 (363)
||.... .+.+++ .|.- .+|++-++..+.+...++..
T Consensus 221 GG~~~~--~~~a~~----iGad-~~~~da~~~~~~a~~l~~~~ 256 (262)
T 1xrs_B 221 GGPRIN--NEIAKE----LGYD-AGFGPGRFADDVATFAVKTL 256 (262)
T ss_dssp ECTTCC--HHHHHT----TTCS-EEECTTCCHHHHHHHHHHHH
T ss_pred ECCcCC--HHHHHH----cCCe-EEECCchHHHHHHHHHHHHH
Confidence 775443 234443 6754 45665667777777666544
No 174
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=20.79 E-value=6e+02 Score=25.73 Aligned_cols=107 Identities=9% Similarity=0.037 Sum_probs=61.5
Q ss_pred HHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhh
Q 017966 226 ADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKL 305 (363)
Q Consensus 226 ~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~ 305 (363)
..++..+| -.-+|+|-+.+++.+..+++-. ++ +.|.+- +.++....-. ..+++.+++.+
T Consensus 119 a~~L~~~G-----~eVi~LG~~vP~e~iv~aa~~~------~~--diVgLS--~l~t~~~~~m---~~~i~~Lr~~g--- 177 (579)
T 3bul_A 119 GVVLQCNN-----YEIVDLGVMVPAEKILRTAKEV------NA--DLIGLS--GLITPSLDEM---VNVAKEMERQG--- 177 (579)
T ss_dssp HHHHHTTT-----CEEEECCSSBCHHHHHHHHHHH------TC--SEEEEE--CCSTHHHHHH---HHHHHHHHHTT---
T ss_pred HHHHHHCC-----CEEEECCCCCCHHHHHHHHHHc------CC--CEEEEE--ecCCCCHHHH---HHHHHHHHHcC---
Confidence 45666653 2458999999999888774432 44 444432 3334333333 66777777654
Q ss_pred hcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhHh
Q 017966 306 KAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 361 (363)
Q Consensus 306 ~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~~ 361 (363)
...||++.=...+.+.+.+.+... -.|--.| ..+..+||+.+-++...
T Consensus 178 --~~i~ViVGGa~~~~~~a~~~i~p~--~~GAD~y----a~DA~~Av~~a~~l~~~ 225 (579)
T 3bul_A 178 --FTIPLLIGGATTSKAHTAVKIEQN--YSGPTVY----VQNASRTVGVVAALLSD 225 (579)
T ss_dssp --CCSCEEEESTTCCHHHHHHHTGGG--CSSCEEE----CCSHHHHHHHHHHHTCT
T ss_pred --CCCeEEEEccccchhhhhhhhhhc--ccCCeEE----ECCHHHHHHHHHHHhcc
Confidence 356666543334544443233211 1254333 58999999999888743
No 175
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=20.76 E-value=4.7e+02 Score=23.61 Aligned_cols=107 Identities=12% Similarity=0.048 Sum_probs=69.5
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 017966 240 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 319 (363)
Q Consensus 240 N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~ 319 (363)
-|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+.. .. |++-.|++
T Consensus 9 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~eE-r~~v~~~~~~~~-----~g--viaGvg~~ 75 (293)
T 1w3i_A 9 TPFTKDNRIDKEKLKIHAENLIR-----KGIDKLFVNGTTGLGPSLSPEE-KLENLKAVYDVT-----NK--IIFQVGGL 75 (293)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHTTC-----SC--EEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHc-----CC--EEEecCCC
Confidence 34555688999999999999885 6899988876433322222111 144555555442 12 88889999
Q ss_pred CHHHHHHHHHhhccccCC------ceeecCCC-CCHHHHHHHHHHHhHhc
Q 017966 320 NYQTGLAKMRALGEELGI------PLEVYGPE-ATMTGICKQAIDCIMSA 362 (363)
Q Consensus 320 ~~~~~~~~l~~~~~~~Gi------p~~~~~~~-~~~~eav~~~~~~~~~~ 362 (363)
+..++.+..+.+ +++|. |-++| - .|.++.++.+-.++.+.
T Consensus 76 ~t~~ai~la~~A-~~~Gadavlv~~P~y~--~~~s~~~l~~~f~~va~a~ 122 (293)
T 1w3i_A 76 NLDDAIRLAKLS-KDFDIVGIASYAPYYY--PRMSEKHLVKYFKTLCEVS 122 (293)
T ss_dssp CHHHHHHHHHHG-GGSCCSEEEEECCCSC--SSCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH-HhcCCCEEEEcCCCCC--CCCCHHHHHHHHHHHHhhC
Confidence 999998887654 34562 22222 3 47888888888887653
No 176
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=20.59 E-value=3.9e+02 Score=22.65 Aligned_cols=115 Identities=8% Similarity=0.027 Sum_probs=63.2
Q ss_pred CcEEEEecCC-c-----HHH-----HHHHHHHhcCCCCCCC-ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEe
Q 017966 210 GRIWTMVAGG-G-----ASV-----IYADTVGDLGYASELG-NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI 277 (363)
Q Consensus 210 g~I~ii~NG~-G-----~~~-----~~~D~l~~~g~gg~pa-N~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~ 277 (363)
.+|++++.-. + .+. -..+.+..+ |-+.. .++ +.++.+.+.-+++++-+++ .++.+++++.
T Consensus 115 ~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~-~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-- 186 (276)
T 2h0a_A 115 PIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEA--GRPFSPDRL-YITRHSQEGGRLALRHFLE---KASPPLNVFA-- 186 (276)
T ss_dssp CEEEEEECCSCCC---CCHHHHHHHHHHHHHHHT--TCCCCGGGE-EEECSSHHHHHHHHHHHHT---TCCSSEEEEC--
T ss_pred CeEEEEecCcccccccchhHHHHHHHHHHHHHHc--CCCCChHHe-eecCCChHHHHHHHHHHHh---CCCCCCEEEE--
Confidence 5688876533 2 111 134677775 43322 222 2345566666666666664 3566776662
Q ss_pred cccCCchhHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHH
Q 017966 278 GGGIANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQ 354 (363)
Q Consensus 278 ~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~ 354 (363)
.++.+| .++++++++.+. ++| -|+..++.... +.+ . +.+. .-++.+..+.
T Consensus 187 -----~~d~~a---~g~~~al~~~g~-----~vP~di~vvg~d~~~~~---~~~------~-lttv----~~~~~~~g~~ 239 (276)
T 2h0a_A 187 -----GADQVA---LGVLEEAVRLGL-----TPGRDVRVLGFDGHPFA---EEA------G-LSTI----AQPVEAMGAR 239 (276)
T ss_dssp -----SSHHHH---HHHHHHHHTTSC-----TTTTSEEEEEESCCTHH---HHH------T-CEEE----ECCHHHHHHH
T ss_pred -----CCcHHH---HHHHHHHHHcCC-----CCCCCeEEEEeCCCchh---hhc------c-eeEe----cCCHHHHHHH
Confidence 246777 899999988762 333 34557776532 122 1 3221 3466666666
Q ss_pred HHHHh
Q 017966 355 AIDCI 359 (363)
Q Consensus 355 ~~~~~ 359 (363)
+++++
T Consensus 240 a~~~l 244 (276)
T 2h0a_A 240 AAQLL 244 (276)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 177
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=20.51 E-value=4.1e+02 Score=23.87 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=37.5
Q ss_pred eccCCCCHHHHHHHHHHHHhhhccCCCCC-eEEEEecccCC--------chhHHhhhHHHHHHHHHHhhhhhhcccceEE
Q 017966 243 EYSGAPNEEEVLQYARVVIDCATADPDGR-KRALLIGGGIA--------NFTDVATTFNGIIRALREKESKLKAARMHIF 313 (363)
Q Consensus 243 D~gG~a~~e~~~~a~~~ll~~~~~~~~v~-~vlv~~~g~i~--------~~~~vA~~~~giv~a~~~~~~~~~~~~~pvv 313 (363)
.++| .+.+.|.++++.+.+ -..+ ++-||+....+ +.+.+ ..+++++++. ..+||+
T Consensus 99 ~i~g-~~~~~~~~~a~~~~~-----~g~d~~iein~~~P~~~g~~~~g~~~e~~----~~iv~~vr~~------~~~Pv~ 162 (311)
T 1jub_A 99 SIAG-MSAAENIAMLKKIQE-----SDFSGITELNLSCPNVPGEPQLAYDFEAT----EKLLKEVFTF------FTKPLG 162 (311)
T ss_dssp EECC-SSHHHHHHHHHHHHH-----SCCCSEEEEESCCCCSSSCCCGGGCHHHH----HHHHHHHTTT------CCSCEE
T ss_pred EcCC-CCHHHHHHHHHHHHh-----cCCCeEEEEeccCCCCCCcccccCCHHHH----HHHHHHHHHh------cCCCEE
Confidence 3444 578899999988764 4578 78888731111 22221 3455555443 368999
Q ss_pred EEeCCC
Q 017966 314 VRRGGP 319 (363)
Q Consensus 314 vrl~G~ 319 (363)
+++...
T Consensus 163 vKi~~~ 168 (311)
T 1jub_A 163 VKLPPY 168 (311)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 997654
No 178
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=20.28 E-value=2.3e+02 Score=22.23 Aligned_cols=71 Identities=7% Similarity=-0.006 Sum_probs=39.5
Q ss_pred CCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCce------ee
Q 017966 268 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPL------EV 341 (363)
Q Consensus 268 ~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~------~~ 341 (363)
+..+.++++ +++++..+..+ ...+++..++... ... -+++.|.+ ..-+++|+. +|+.- .+
T Consensus 62 ~~~~~vvlD-ls~v~~iDssg--l~~L~~~~~~~~~----~g~--~l~l~~~~-~~v~~~l~~----~gl~~~~~~~~~i 127 (143)
T 3llo_A 62 ENIHTVILD-FTQVNFMDSVG--VKTLAGIVKEYGD----VGI--YVYLAGCS-AQVVNDLTS----NRFFENPALKELL 127 (143)
T ss_dssp -CCSEEEEE-CTTCCCCCHHH--HHHHHHHHHHHHT----TTC--EEEEESCC-HHHHHHHHH----TTTTSSGGGGGGE
T ss_pred CCceEEEEE-CCCCccccHHH--HHHHHHHHHHHHH----CCC--EEEEEeCC-HHHHHHHHh----CCCeeccCccceE
Confidence 345544444 56666666544 2566666665542 233 34444555 345778875 55431 23
Q ss_pred cCCCCCHHHHHHHH
Q 017966 342 YGPEATMTGICKQA 355 (363)
Q Consensus 342 ~~~~~~~~eav~~~ 355 (363)
|.|.++|+..+
T Consensus 128 ---f~s~~~Al~~~ 138 (143)
T 3llo_A 128 ---FHSIHDAVLGS 138 (143)
T ss_dssp ---ESSHHHHHHHT
T ss_pred ---ECcHHHHHHHH
Confidence 67999998764
No 179
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=20.27 E-value=2.7e+02 Score=24.12 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=38.2
Q ss_pred EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHH
Q 017966 312 IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 358 (363)
Q Consensus 312 vvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~ 358 (363)
++.+.+|..=+-|..++.......|..++..|...++++.+..+.+.
T Consensus 96 ll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~ 142 (215)
T 3ezx_A 96 ITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKH 142 (215)
T ss_dssp EEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHT
T ss_pred EEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHc
Confidence 45568887778888888877778999998889888999988887764
No 180
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=20.27 E-value=2.7e+02 Score=25.68 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhhhhhcccceEEEEeCC-CCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHH
Q 017966 292 NGIIRALREKESKLKAARMHIFVRRGG-PNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQ 354 (363)
Q Consensus 292 ~giv~a~~~~~~~~~~~~~pvvvrl~G-~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~ 354 (363)
+.+.++++.... .....++...| .+.+.-++.+++ .++++++++..++|.+....
T Consensus 197 ~~~~~al~~l~~----~~~~~vi~~~G~~~~~~~~~~~~~----~~~~~~v~~f~~dm~~~l~~ 252 (365)
T 3s2u_A 197 KLLPEALAQVPL----EIRPAIRHQAGRQHAEITAERYRT----VAVEADVAPFISDMAAAYAW 252 (365)
T ss_dssp HHHHHHHHTSCT----TTCCEEEEECCTTTHHHHHHHHHH----TTCCCEEESCCSCHHHHHHH
T ss_pred hhhHHHHHhccc----ccceEEEEecCccccccccceecc----cccccccccchhhhhhhhcc
Confidence 666777766532 11223444444 445555555554 77888888877888776543
No 181
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=20.14 E-value=2.8e+02 Score=25.03 Aligned_cols=31 Identities=19% Similarity=0.108 Sum_probs=22.8
Q ss_pred eccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecc
Q 017966 243 EYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGG 279 (363)
Q Consensus 243 D~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g 279 (363)
=.-|+|+.+...+.++.+.+ . +|.|-|.+|.
T Consensus 22 i~~GdP~~~~~~~~~~~l~~----~--aD~IElG~Pf 52 (271)
T 1ujp_A 22 LTAGFPSREGFLQAVEEVLP----Y--ADLLEIGLPY 52 (271)
T ss_dssp EETTSSCHHHHHHHHHHHGG----G--CSSEEEECCC
T ss_pred ecCCCCChHHHHHHHHHHHh----c--CCEEEECCCC
Confidence 37889998877777666654 3 8888888744
Done!