RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017966
(363 letters)
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp,
lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Length = 829
Score = 519 bits (1337), Expect = e-180
Identities = 157/366 (42%), Positives = 226/366 (61%), Gaps = 3/366 (0%)
Query: 1 MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQ--EYY 58
L +RGK GLV +NL L V ++K RLG E +G G + F++EPFVPH+Q E+Y
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 59 LSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTL-DACAPLIATLPLEFRGK 117
+ I + R G + F GG+++ + K + + + ++ + D L+ P + +
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 118 IGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPL 177
+ FI G+F ++DL F+++E+NP + Y LD+ ++D TA + KW +IEFP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
Query: 178 PFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 237
PFGR E++I LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 238 LGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRA 297
L NY EYSGAP+E++ YA+ ++ T + + L+IGG IANFT+VA TF GI+RA
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA 360
Query: 298 LREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 357
+R+ + LK + IFVRRGGPNYQ GL M +G+ GIP+ V+G E MT I A+
Sbjct: 361 IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG 420
Query: 358 CIMSAS 363
+
Sbjct: 421 HRPIPN 426
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid,
lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB:
3mwe_A*
Length = 425
Score = 435 bits (1120), Expect = e-152
Identities = 156/360 (43%), Positives = 225/360 (62%), Gaps = 3/360 (0%)
Query: 1 MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQ--EYY 58
L +RGK GLV +NL L V ++K RLG E +G G + F++EPFVPH+Q E+Y
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 59 LSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDAC-APLIATLPLEFRGK 117
+ I + R G + F GG+++ + K + + + ++ + + L+ P + +
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 118 IGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPL 177
+ FI G+F ++DL F+++E+NP + Y LD+ ++D TA + KW +IEFP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
Query: 178 PFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 237
PFGR E++I LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 238 LGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRA 297
L NY EYSGAP+E++ YA+ ++ T + + L+IGG IANFT+VA TF GI+RA
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA 360
Query: 298 LREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 357
+R+ + LK + IFVRRGGPNYQ GL M +G+ GIP+ V+G E MT I A+
Sbjct: 361 IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG 420
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET:
GDP; 2.35A {Thermus aquaticus}
Length = 397
Score = 64.5 bits (158), Expect = 1e-11
Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 14/171 (8%)
Query: 4 GKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKG-PITTFIVEPFVPHNQEYYLSIV 62
G RGK+G V L + E + LG + KG + +V V +EYY ++
Sbjct: 51 GGRGKAGGVKLADTPQEAYEKAQAILGMNI-----KGLTVKKVLVAEAVDIAKEYYAGLI 105
Query: 63 SDRLGCTISF--SECGGIEIEE----NWDKVKTIFLPTEKHMTLDACAPLIATLPLEFR- 115
DR + S+ GG++IEE + + ++ K ++ LE
Sbjct: 106 LDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGFRPFEAREMVKRAGLEGNL 165
Query: 116 GKIGDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFK 165
K+ ++ ++ ++ +D S E+NP + +G D + LDD A F+
Sbjct: 166 NKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFR 216
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle,
heterotetramer, ligase, ATP-grAsp fold, R fold; HET:
COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4
PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B*
2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Length = 388
Score = 61.3 bits (150), Expect = 1e-10
Identities = 45/178 (25%), Positives = 67/178 (37%), Gaps = 22/178 (12%)
Query: 4 GKRGKSGLVALNLDLAQVAEFVKGRLG-------TEVEMGGCKG-PITTFIVEPFVPHNQ 55
G RGK+G V + + F + LG T G P+ +VE +
Sbjct: 52 GGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQT-----DANGQPVNQILVEAATDIAK 106
Query: 56 EYYLSIVSDRLGCTISF--SECGGIEIEE----NWDKVKTIFLPTEKHMTLDACAPLIAT 109
E YL V DR + F S GG+EIE+ + + L L
Sbjct: 107 ELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFK 166
Query: 110 LPL--EFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAF 164
L L + + MG+ +F + D + IE+NP + G+ LD + D A F
Sbjct: 167 LGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALF 224
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active
site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus
scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B*
2fpp_B* 1euc_B* 1eud_B*
Length = 395
Score = 57.5 bits (140), Expect = 2e-09
Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 22/179 (12%)
Query: 4 GKRGKSGLVALNLDLAQVAEFVKGRLG-------TEVEMGGCKG-PITTFIVEPFVPHNQ 55
G G V L D V + K +G T +G + +V + ++
Sbjct: 59 FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQT-----PKEGVKVNKVMVAEALDISR 113
Query: 56 EYYLSIVSDRLGCTISF--SECGGIEIEE----NWDKVKTIFLPTEKHMTLDACAPLIAT 109
E YL+I+ DR S GG++IEE N + + + + + +
Sbjct: 114 ETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAEN 173
Query: 110 LPL--EFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFK 165
L + + D I ++ +F +D + +E+NPF G+ D + DD A F+
Sbjct: 174 LGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFR 232
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 8e-08
Identities = 56/315 (17%), Positives = 82/315 (26%), Gaps = 141/315 (44%)
Query: 53 HNQEYY----LSIVSDR-LGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLI 107
H ++ Y L IV + + TI F G I EN+ M +
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA-----------MIFETIV--- 1697
Query: 108 ATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDT------ 161
D + +F++++ F E +G L T
Sbjct: 1698 ------------DGKLKTEKIFKEINEHSTSYT-F---RSE------KGLLSATQFTQPA 1735
Query: 162 ------AAFKNFKKWANIEFPLPF-GRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWT 214
AAF++ K I F G HSL E + L
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAG----------HSLGE-------YAAL-------- 1770
Query: 215 MVAGGGA-SVIYADTV------GDLGY----ASELG--NYAEYSGAPN------EEEVLQ 255
+ S+ V G ELG NY + P +E LQ
Sbjct: 1771 -ASLADVMSI--ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ 1827
Query: 256 YARVVIDCATADPDGRKRALLIGGG---IANFTDVATTFN---------GIIRALRE--- 300
Y V++ G I N +N G +RAL
Sbjct: 1828 Y---VVERVGKR----------TGWLVEIVN-------YNVENQQYVAAGDLRALDTVTN 1867
Query: 301 -----KESKLKAARM 310
K K+ +
Sbjct: 1868 VLNFIKLQKIDIIEL 1882
Score = 45.0 bits (106), Expect = 3e-05
Identities = 46/285 (16%), Positives = 79/285 (27%), Gaps = 88/285 (30%)
Query: 1 MLF--GKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFV------- 51
+LF G R +L + + + ++ G M +T V+ +V
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN-LTQEQVQDYVNKTNSHL 360
Query: 52 PHNQEYYLSIV-SDRLGCTISFSECG-------------GIEIEENWD-----------K 86
P ++ +S+V + + G + D K
Sbjct: 361 PAGKQVEISLVNGAK-----NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 87 VKTIFLPT-----EKHMTLDACAPLIATLP---LEFRGKIGDFIMGVFAVFQDLDFSFIE 138
FLP + A + L + F K D + V+ F
Sbjct: 416 FSNRFLPVASPFHSHLLV-PASDLINKDLVKNNVSFNAK--DIQIPVYDTF--------- 463
Query: 139 MNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLD---E 195
+G D+R L + + + I P+ + + H LD
Sbjct: 464 -------DGS----DLR-VLSGSISERIVD--CIIRLPVKWETTTQFKAT--HILDFGPG 507
Query: 196 KTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 240
S T N G G VI A T+ D+ + G
Sbjct: 508 GASGLGVLTHRNKDGT--------GVRVIVAGTL-DINPDDDYGF 543
Score = 32.3 bits (73), Expect = 0.32
Identities = 42/249 (16%), Positives = 61/249 (24%), Gaps = 119/249 (47%)
Query: 141 PFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIE--FPLP-----FGRVLSSTESFIHSL 193
P TL +G ++E +P L E F L
Sbjct: 8 PLTLSHG------------------------SLEHVLLVPTASFFIASQLQ--EQFNKIL 41
Query: 194 ----------DEKTS-ASL--KFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 240
DE T+ A L KF LGY S L
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKF----------------------------LGYVSSL-- 71
Query: 241 YAEYSGAPNEEEVLQYARVVIDC---------------ATADPDGRKRALLIGGGIANFT 285
E S ++VL + + A + + I N+
Sbjct: 72 -VEPSKVGQFDQVL---NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 286 DVATTFN---------GIIRALREKESKLKAARMHIFVRRGGP-NYQTGLAKMRALGEEL 335
+ RA+ E ++L A IF GG N ++R L
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVA----IF---GGQGNTDDYFEELRDLY--- 177
Query: 336 GIPLEVYGP 344
+ Y
Sbjct: 178 ----QTYHV 182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 4e-06
Identities = 38/263 (14%), Positives = 80/263 (30%), Gaps = 67/263 (25%)
Query: 16 LDLAQVAEFVKGRLGT--EVEMGGCKGPITTFI---VEPFVPHN-QEYY--LSIVSD--- 64
L+ +AE ++ L T + C +TT I + P ++ + LS+
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 65 -------RLGCTISFSECGGIEIE-------ENWDKVKTIFLP-------------TEKH 97
+ + S+ + + E K TI +P H
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 98 MTL------DACAPLIATLPLEFRGKIGDFIM---------GVFAVFQD--LDFSFIEMN 140
++ +P I +F+ LDF F+E
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 141 PFTLVNGEPYPLDMRGELDDTAA-FKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSA 199
+ + + G + +T K +K + P + R++++ F+ ++E
Sbjct: 507 ----IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK-YERLVNAILDFLPKIEENLIC 561
Query: 200 S-----LKFTVLNPKGRIWTMVA 217
S L+ ++ I+
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEAH 584
Score = 45.6 bits (107), Expect = 2e-05
Identities = 37/261 (14%), Positives = 80/261 (30%), Gaps = 78/261 (29%)
Query: 7 GKSGLVALNLDLAQVAEFVKGRLGTEV---EMGGCKGPITTFIVEPFVPHNQEYYLSIVS 63
GK+ + D+ + V+ ++ ++ + C P T ++E Q+ I
Sbjct: 162 GKTWVAL---DVCL-SYKVQCKMDFKIFWLNLKNCNSPET--VLEML----QKLLYQIDP 211
Query: 64 DRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHM-------------TLDA----CAPL 106
+ + S + L ++ + +A C L
Sbjct: 212 N--WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 107 IATLPLEFRGK-IGDFIMG-----VFAVFQDLDFS----------FIEMNPFTL----VN 146
+ T R K + DF+ + + + +++ P L +
Sbjct: 270 LTT-----RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 147 GEPYPLDMRGEL--DDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASL--K 202
P L + E D A + N+K N + ++ + ES ++ L+ + +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKH-VNCD------KLTTIIESSLNVLEPAEYRKMFDR 377
Query: 203 FTVLNPKG---------RIWT 214
+V P IW
Sbjct: 378 LSVF-PPSAHIPTILLSLIWF 397
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Length = 209
Score = 32.0 bits (72), Expect = 0.19
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 47 VEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVK 88
V Y L+ + LG ++ SE G + +W +++
Sbjct: 146 VISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQ 187
>3iyl_A Outer capsid VP4; non-enveloped virus, membrane penetration
protein, autocleav myristol group, icosahedral virus;
HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_I
Length = 648
Score = 30.6 bits (68), Expect = 1.1
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 188 SFIHSLDEKTSA----SLKFTVLNPKGRIWTMVAGGGAS----VIYADTVGDLGYASE 237
SF + D ++A LK VLNP G++W V A+ I +D G + +E
Sbjct: 19 SFTPTSDMTSTAAPAIDLKPGVLNPTGKLWRPVGTSVATIDSLAIVSDRFGQYSFVNE 76
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA,
exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A
{Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Length = 179
Score = 28.8 bits (64), Expect = 1.8
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 53 HNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVK 88
LS + +G + E+ D +K
Sbjct: 123 IGDNLRLSTKEEEMGVLRALCSNCKTEMVREGDILK 158
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit;
flavoprotein, electron-transfer, FAD, oxidoreductase;
HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1
d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Length = 520
Score = 28.5 bits (64), Expect = 4.2
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 12/56 (21%)
Query: 310 MHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPE--ATMTGICKQAID--CIMS 361
+ F + G Y+ + + YGP I K+A+D I++
Sbjct: 461 LDEFEKEGYAVYRVNTRFQDRVAQS-------YGPVKRKLEHAI-KRAVDPNNILA 508
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1;
glucosamine-6-phosphate synthase, aldose/ketose
isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo
sapiens} PDB: 2zj4_A* 2v4m_A*
Length = 375
Score = 27.8 bits (63), Expect = 6.1
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 65 RLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPL 112
R G + + E +N + I +P ++D +++ +PL
Sbjct: 306 RQGRPVVICDKEDTETIKNTKRT--IKVPH----SVDCLQGILSVIPL 347
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET:
GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB:
1mor_A* 1mos_A*
Length = 368
Score = 27.8 bits (63), Expect = 6.2
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 65 RLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPL 112
R G F++ + + + I +P + AP+ T+PL
Sbjct: 299 RGGQLYVFADQDAGFVSSDNMHI--IEMPH----VEEVIAPIFYTVPL 340
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 27.5 bits (61), Expect = 7.9
Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 9/103 (8%)
Query: 252 EVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALR---------EKE 302
+ + + PD ++ G DVA L E
Sbjct: 127 DFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESL 186
Query: 303 SKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPE 345
+ I RRG ++R L + G+ + + E
Sbjct: 187 RPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAE 229
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing];
structural genomics; 2.28A {Francisella tularensis
subsp}
Length = 372
Score = 27.4 bits (62), Expect = 8.6
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 65 RLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPL 112
R G I F + E + + L D AP++ T+PL
Sbjct: 302 RGGKLILFVDKAVKERVNFDN-SIVLELDA----GHDFSAPVVFTIPL 344
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme,
protease, Z disulfide bond, hydrolase, metal-binding,
metalloprotease,; 1.45A {Astacus astacus} PDB: 1iab_A
1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Length = 235
Score = 27.1 bits (60), Expect = 9.7
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 50 FVPH-NQEYYLSIVSDRLGC 68
FVP + Y+ I + GC
Sbjct: 79 FVPRTTESDYVEIFTSGSGC 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.415
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,804,594
Number of extensions: 375600
Number of successful extensions: 919
Number of sequences better than 10.0: 1
Number of HSP's gapped: 905
Number of HSP's successfully gapped: 26
Length of query: 363
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 268
Effective length of database: 4,049,298
Effective search space: 1085211864
Effective search space used: 1085211864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)