RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 017966
(363 letters)
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 150
Score = 61.4 bits (149), Expect = 3e-12
Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 21/147 (14%)
Query: 210 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPD 269
G I MV G G ++ D V G E N+ + G +E V + +++ +D
Sbjct: 19 GNIGCMVNGAGLAMGTMDIVKLHG--GEPANFLDVGGGATKERVTEAFKII----LSDDK 72
Query: 270 GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMR 329
+ ++ +GII A+ E + + VR G N + G K+
Sbjct: 73 VKA---VLVNIFGGIVRCDLIADGIIGAVAEVGVNVP-----VVVRLEGNNAELGAKKLA 124
Query: 330 ALGEELGIPLEVYGPEATMTGICKQAI 356
+ G+ + +T +Q +
Sbjct: 125 ----DSGLNII---AAKGLTDAAQQVV 144
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 47.6 bits (112), Expect = 6e-07
Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 12/174 (6%)
Query: 4 GKRGKSGLVALNLDLAQVAEFVKGRLGTEV---EMGGCKGPITTFIVEPFVPHNQEYYLS 60
G RGK+G V + + F + LG + + P+ +VE +E YL
Sbjct: 52 GGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLG 111
Query: 61 IVSDRLGCTISF--SECGGIEIEE----NWDKVKTIFLPTEKHMTLDACAPLIATLPLEF 114
V DR + F S GG+EIE+ + + L L L LE
Sbjct: 112 AVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEG 171
Query: 115 R--GKIGDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFK 165
+ + MG+ +F + D + IE+NP + G+ LD + D A F+
Sbjct: 172 KLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFR 225
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 47.7 bits (112), Expect = 7e-07
Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 14/175 (8%)
Query: 4 GKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKG---PITTFIVEPFVPHNQEYYLS 60
G G V L D V + K +G + + +V + ++E YL+
Sbjct: 60 FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 119
Query: 61 IVSDRL--GCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKI 118
I+ DR G + S GG++IEE + E+ ++ A E G +
Sbjct: 120 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELI-FKEQIDIIEGIKDSQAQRMAENLGFL 178
Query: 119 GDFI-------MGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFK 165
G ++ +F +D + +E+NPF G+ D + DD A F+
Sbjct: 179 GPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFR 233
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 148
Score = 41.0 bits (96), Expect = 4e-05
Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 21/165 (12%)
Query: 195 EKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVL 254
E +A + G I V G G ++ D + G + N+ + G E +V
Sbjct: 4 ENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNG--GKPANFLDLGGGVKESQVY 61
Query: 255 QYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV 314
Q TADP ++ + A NGI +A RE E K+ + V
Sbjct: 62 Q----AFKLLTADPKVEA---ILVNIFGGIVNCAIIANGITKACRELELKVP-----LVV 109
Query: 315 RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 359
R G N + + G+P+ + K+A+ +
Sbjct: 110 RLEGTNVHEA----QNILTNSGLPITSA---VDLEDAAKKAVASV 147
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 34.5 bits (79), Expect = 0.005
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 32 EVEMGGC--KGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVK 88
+VE+ G I V Y L+ + LG ++ SE G + +W +++
Sbjct: 55 KVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQ 113
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA,
domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 163
Score = 31.6 bits (71), Expect = 0.085
Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 34/152 (22%)
Query: 208 PKG-RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEE------EVLQYARVV 260
P+G ++ M GG V+ AD + G A EE + V
Sbjct: 1 PRGNKVAIMTNAGGPGVLTADELDKRG-----LKLATLEEKTIEELRSFLPPMAAVKNPV 55
Query: 261 IDCATADPDGRKRAL--------------LIGGGIANFTDVATTFNGIIRALREKESKLK 306
A+A + R + + GIIRA++E ++
Sbjct: 56 DMIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNE-- 113
Query: 307 AARMHIFVRRGGPNYQTGLAKMRALGEELGIP 338
+ + + G + K + L E+ GIP
Sbjct: 114 --KPVLAMFMAGYVSE----KAKELLEKNGIP 139
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 235
Score = 29.5 bits (65), Expect = 0.53
Identities = 15/135 (11%), Positives = 26/135 (19%), Gaps = 11/135 (8%)
Query: 34 EMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLP 93
E + + + + I + I
Sbjct: 75 EYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNI 134
Query: 94 T-----EKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPF------ 142
M + + E G + DL+F E++
Sbjct: 135 PIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIVAGTN 194
Query: 143 TLVNGEPYPLDMRGE 157
VNG PY
Sbjct: 195 IFVNGSPYTWLRYDR 209
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 238
Score = 29.0 bits (64), Expect = 0.81
Identities = 16/113 (14%), Positives = 29/113 (25%), Gaps = 15/113 (13%)
Query: 51 VPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATL 110
+ + S+ G I + + + M A +
Sbjct: 109 NIDGLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQV-----FEMGDKLVAKAKELV 163
Query: 111 PLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPF------TLVNGEPYPLDMRGE 157
P G ++L+ EM+ + +NG PY GE
Sbjct: 164 PPGMIG----PFCLQSLCNENLELVVFEMSARVDGGTNSFMNGGPYSFLYNGE 212
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase
{Acinetobacter sp. [TaxId: 472]}
Length = 133
Score = 27.2 bits (59), Expect = 1.6
Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 269 DGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKM 328
D ++ L++ GG F +++ L +K S+ + + L +
Sbjct: 3 DVKRPVLMLAGGTG-----IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDAL 57
Query: 329 RA 330
+
Sbjct: 58 QQ 59
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
{Rhodothermus marinus [TaxId: 29549]}
Length = 381
Score = 26.1 bits (57), Expect = 8.4
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 164 FKNFKKWANIEFPLPFGRVLSSTESFIHSLDE 195
W + F L RVL+ T + +
Sbjct: 329 QPGDPDWEELLFKLWTTRVLNYTMTVALRGYD 360
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.415
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,385,579
Number of extensions: 67278
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 16
Length of query: 363
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,226,816
Effective search space: 339828032
Effective search space used: 339828032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)