BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017968
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DYK|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
pdb|4DYK|B Chain B, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
Length = 451
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 172/350 (49%), Gaps = 24/350 (6%)
Query: 1 MTWLHDRIWPYESNMTEEDSYI--STLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLG 58
MTWL D IWP E ED +I T L E + G+TCF++ + + V G
Sbjct: 90 MTWLQDHIWPAEGQWVSED-FIRDGTELAIAEQVKGGITCFSDMY-FYPQAICGVVHDSG 147
Query: 59 LRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELY--AKHHHAADGRIRIWFGIRQIMN 116
+RA + +D P A R + + I+ L+ KHH RIRI FG
Sbjct: 148 VRAQVAIPVLD----FPIPGA-RDSAEAIRQGMALFDDLKHHP----RIRIAFGPHAPYT 198
Query: 117 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLS 176
+D L + + E I MHV E +E + M+ + + L ++ L +
Sbjct: 199 VSDDKLEQILVLTEELDASIQMHVHETAFEVEQAME--RNGERPLARLHRLGLLGPRFQA 256
Query: 177 AHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNR 235
H V++ ++ +L V HCP S +++ GF P++++ A + V++GTDGA SNN
Sbjct: 257 VHMTQVDNDDLAMLVETNSSVIHCPESNLKLASGFCPVEKLWQAGVNVAIGTDGAASNND 316
Query: 236 MSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGK 295
+ ++ E A+L+ K V+ T AL A LRMAT+NGA+++ + IGSLEAGK
Sbjct: 317 LDLLGETRTAALLAKA--VYGQAT----ALDAHRALRMATLNGARALGLERLIGSLEAGK 370
Query: 296 KADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 345
AD+V D PV+D ++ L+Y + V V G+ ++ + ++L
Sbjct: 371 AADLVAFDLSGLAQQPVYDPVSQLIYASGRDCVRHVWVGGRQLLDDGRLL 420
>pdb|3LNP|A Chain A, Crystal Structure Of Amidohydrolase Family Protein
Olei01672_1_465 From Oleispira Antarctica
Length = 468
Score = 148 bits (373), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 108/369 (29%), Positives = 176/369 (47%), Gaps = 33/369 (8%)
Query: 2 TWLHDRIWPYESNMTEEDSYIS--TLLCGIELIHSGVTCFAEAG--GQHVSEMAKAVELL 57
TWL + +WP E+ +E ++ T L E I SG T FA+ Q E A A
Sbjct: 111 TWLQEHVWPAEAQHVDE-HFVKQGTELAIAEXIQSGTTTFADXYFYPQQSGEAALAA--- 166
Query: 58 GLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKEL---YAKHHHAADGRIRIWFGIRQI 114
G+RA +D P ++A + D+ I+ E + H G ++I FG
Sbjct: 167 GIRAVCFAPVLD----FPTNYA-QNADEYIRKAIECNDRFNNHPXNEQGLVQIGFGPHAP 221
Query: 115 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNL 174
+D L E ++ + + +H+ E +E ++T + L I FL +
Sbjct: 222 YTVSDEPLKEITXLSDQLDXPVQIHLHETDFEVSESLET--FNKRPTQRLADIGFLNERV 279
Query: 175 LSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSN 233
H V+ +I +L + G + HCP S +++ GF PI ++ A+I +++GTDGA SN
Sbjct: 280 SCVHXTQVDDGDIKILQKTGASIIHCPESNLKLASGFCPIAKLSAANIPLAIGTDGAASN 339
Query: 234 NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEA 293
N + E A+L+ KG + D +A+PA L AT+ GA+++ D+ GSL+
Sbjct: 340 NDLDXFSETKTAALLAKGV------SQDASAIPAIEALTXATLGGARALGIDDITGSLKP 393
Query: 294 GKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLF 353
GK AD+ +D + PV D ++ VYC ++ V V NG+ ++KN G L
Sbjct: 394 GKAADIQAIDLNTLSSQPVFDPVSHXVYCTKSTQVSHVWVNGRCLLKN--------GELT 445
Query: 354 QLQDKLLMN 362
L ++ L+N
Sbjct: 446 TLNEETLIN 454
>pdb|3HPA|A Chain A, Crystal Structure Of An Amidohydrolase Gi:44264246 From An
Evironmental Sample Of Sargasso Sea
pdb|3HPA|B Chain B, Crystal Structure Of An Amidohydrolase Gi:44264246 From An
Evironmental Sample Of Sargasso Sea
Length = 479
Score = 131 bits (329), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 177/361 (49%), Gaps = 33/361 (9%)
Query: 3 WLHD--RIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAE-----AGGQHVSEMAKAVE 55
WL + +IW +++T E +STL EL+ SG T ++ G + + A +
Sbjct: 115 WLTNLYKIW---AHLTPEMIEVSTLTAMAELLQSGCTTSSDHLYIYPNGSRLDDSIGAAQ 171
Query: 56 LLGLRACLVQSTMDCGE---GLPASWAVRTTDDCIQSQKELYAKHHHAADGR---IRIWF 109
+G+R + M G+ GLP V D ++ + L +H +GR +R+
Sbjct: 172 RIGMRFHASRGAMSVGQRDGGLPPDSVVEREPDILRDTQRLIETYHD--EGRYAMLRVVV 229
Query: 110 GIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEF 169
+ + L+ + +ARE+ +H H+AE N + K + + + +
Sbjct: 230 APCSPFSVSRDLMRDAAVLAREYGVSLHTHLAE--NVNDIAYSREKFGMTPAEYAEDLGW 287
Query: 170 LQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTD 228
+ +++ AH V ++ IGL +R G V+HCP S MR+ G AP+K+M A + V LG D
Sbjct: 288 VGHDVWHAHCVQLDDAGIGLFARTGTGVAHCPCSNMRLASGIAPVKKMRLAGVPVGLGVD 347
Query: 229 GAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDI 288
G+ SN+ +V E+ A L+ R F P A+ A L +AT+ GAK VL +DI
Sbjct: 348 GSASNDGAQMVAEVRQALLLQ--RVGFG-----PDAMTAREALEIATLGGAK-VLNRDDI 399
Query: 289 GSLEAGKKADMVVVDPFSWPMV--PVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 346
G+L+ G AD D P+ +HD + +LV+C ++ +V+ NG+ V++ ++
Sbjct: 400 GALKPGMAADFAAFD-LRQPLFAGALHDPVAALVFCAPSQTAYTVV-NGKVVVREGRLAT 457
Query: 347 L 347
L
Sbjct: 458 L 458
>pdb|4F0R|A Chain A, Crystal Structure Of An Adenosine Deaminase Homolog From
Chromobacterium Violaceum (Target Nysgrc-019589) Bound
Zn And 5'- Methylthioadenosine (Unproductive Complex)
pdb|4F0S|A Chain A, Crystal Structure Of An Adenosine Deaminase Homolog From
Chromobacterium Violaceum (Target Nysgrc-019589) With
Bound Inosine
Length = 447
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 164/349 (46%), Gaps = 22/349 (6%)
Query: 3 WLHDRIWPYESNMTEED-SYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRA 61
WL + IWP E +D + +LL E I G T + + + +A+A G R
Sbjct: 90 WLTNYIWPTEGKHVHDDFVFDGSLLAXGEXIRGGTTTINDXYFYNAA-VARAGLASGXRT 148
Query: 62 CLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRL 121
+ S ++ P ++A D + E + + + +D
Sbjct: 149 FVGCSILE----FPTNYASNADDYIAKGXAE---RSQFLGEDLLTFTLAPHAPYTVSDDT 201
Query: 122 LLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGT--VTFLDKIEFLQNNLLSAHT 179
+ +A + IH H+ E E ++ +HG + L ++ L L++AH
Sbjct: 202 FRKVVTLAEQEDXLIHCHIHETADE----VNNSVKEHGQRPLARLQRLGLLSPRLVAAHX 257
Query: 180 VWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSI 238
V +N E+ L +R G+ +H PAS ++ G +P+ ++ A + V +GTDGA SNN++
Sbjct: 258 VHLNDAEVELAARHGLSTAHNPASNXKLASGISPVSKLXDAGVAVGIGTDGAASNNKLDX 317
Query: 239 VDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKAD 298
+ E LA+L+ K GT DP ++PA +R AT+NGA+++ + +GS++ GK+AD
Sbjct: 318 LAETRLAALLAK------VGTLDPTSVPAAAAIRXATLNGARALGIADKVGSVKVGKQAD 371
Query: 299 MVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLL 347
++ +D P D I+ +VY E V V G+ + + +K+ L
Sbjct: 372 LIALDLAQLETAPAFDPISHVVYAAGREQVSHVWVKGRALXRERKLTTL 420
>pdb|1P1M|A Chain A, Structure Of Thermotoga Maritima Amidohydrolase Tm0936
Bound To Ni And Methionine
pdb|2PLM|A Chain A, Crystal Structure Of The Protein Tm0936 From Thermotoga
Maritima Complexed With Zn And S-Inosylhomocysteine
Length = 406
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 158/338 (46%), Gaps = 36/338 (10%)
Query: 3 WLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRAC 62
WL ++ P E +TE+ +Y T+L +E+ G+ F + H +AKAV G+RA
Sbjct: 75 WLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMY-FHEEWIAKAVRDFGMRAL 133
Query: 63 LVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHH-HAADGRIRIWFGIRQIMNATDRL 121
L + +D DD + ++ L + + +GRI + FG ++
Sbjct: 134 LTRGLVDS-----------NGDDGGRLEENLKLYNEWNGFEGRIFVGFGPHSPYLCSEEY 182
Query: 122 LLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW 181
L D A+ + +H+ E E + D + V ++AH V
Sbjct: 183 LKRVFDTAKSLNAPVTIHLYETSKEEYDLEDILNIGLKEV-----------KTIAAHCVH 231
Query: 182 VNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVD 240
+ G+L VSH PAS +++ G AP++ M+ + V+LGTDGA SNN +++
Sbjct: 232 LPERYFGVLKDIPFFVSHNPASNLKLGNGIAPVQRMIEHGMKVTLGTDGAASNNSLNLFF 291
Query: 241 EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMV 300
EM LASL+ K + +P L T L+M T +GA+++ + + G +E G AD+V
Sbjct: 292 EMRLASLLQKAQ--------NPRNLDVNTCLKMVTYDGAQAMGFKS--GKIEEGWNADLV 341
Query: 301 VVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 338
V+D M PV + LV+ E V + M G+W+
Sbjct: 342 VIDLDLPEMFPVQNIKNHLVHAFSGE-VFATMVAGKWI 378
>pdb|4DZH|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Xanthomonas Campestris (Target Nysgrc-200456) With Bound
Zn
Length = 472
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 159/348 (45%), Gaps = 20/348 (5%)
Query: 1 MTWLHDRIWPYESNMT-EEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAV-ELLG 58
M WL IWP E+ + E T L E++ G TC E +++ AV + G
Sbjct: 97 MVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCVNE--NYFFADVQAAVYKQHG 154
Query: 59 LRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNAT 118
RA + +D P +WA + D+ EL+ + D I F
Sbjct: 155 FRALVGAVIID----FPTAWA-SSDDEYFARAGELHDQWRD--DPLISTAFAPHAPYTVN 207
Query: 119 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAH 178
D R +A + +H+H E E V + + LD++ + + L++ H
Sbjct: 208 DANFERVRMLADQLDMPVHLHTHETAQE--VADSVAQYGQRPLARLDRLGLVNDRLIAVH 265
Query: 179 TVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMS 237
+ EI L + GV V HCP S +++ GF P + A + +++GTDG SNN +
Sbjct: 266 MTQLTEAEIHLCAERGVSVVHCPESNLKLASGFCPACALQRASVNLAIGTDGCASNNDLD 325
Query: 238 IVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKA 297
+ E A+++ K AN T AL A T LR AT+ GA+++ + + IGS+E GK+A
Sbjct: 326 MFSENRTAAILAKA---VANDAT---ALDAATTLRAATLGGARALGFGDRIGSIEVGKQA 379
Query: 298 DMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 345
D+V VD + P+H ++ L+Y V V G+ + ++++
Sbjct: 380 DLVCVDLSALETQPLHHVLSQLIYAAGRHQVTDVWIAGKPKLVQRELI 427
>pdb|1J6P|A Chain A, Crystal Structure Of Metal-Dependent Hydrolase Of
CytosinedemaniaseCHLOROHYDROLASE FAMILY (TM0936) FROM
THERMOTOGA Maritima At 1.9 A Resolution
Length = 418
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 148/338 (43%), Gaps = 36/338 (10%)
Query: 3 WLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRAC 62
WL ++ P E +TE+ +Y T+L E G+ F + H +AKAV G RA
Sbjct: 87 WLFSKVLPIEDRLTEKXAYYGTILAQXEXARHGIAGFVDXY-FHEEWIAKAVRDFGXRAL 145
Query: 63 LVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHH-HAADGRIRIWFGIRQIMNATDRL 121
L + +D DD + ++ L + + +GRI + FG ++
Sbjct: 146 LTRGLVDS-----------NGDDGGRLEENLKLYNEWNGFEGRIFVGFGPHSPYLCSEEY 194
Query: 122 LLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW 181
L D A+ + +H+ E E + D + V ++AH V
Sbjct: 195 LKRVFDTAKSLNAPVTIHLYETSKEEYDLEDILNIGLKEV-----------KTIAAHCVH 243
Query: 182 VNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVD 240
+ G+L VSH PAS +++ G AP++ + V+LGTDGA SNN +++
Sbjct: 244 LPERYFGVLKDIPFFVSHNPASNLKLGNGIAPVQRXIEHGXKVTLGTDGAASNNSLNLFF 303
Query: 241 EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMV 300
E LASL+ K + +P L T L+ T +GA++ + + G +E G AD+V
Sbjct: 304 EXRLASLLQKAQ--------NPRNLDVNTCLKXVTYDGAQAXGFKS--GKIEEGWNADLV 353
Query: 301 VVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 338
V+D PV + LV+ E V + G+W+
Sbjct: 354 VIDLDLPEXFPVQNIKNHLVHAFSGE-VFATXVAGKWI 390
>pdb|3LS9|A Chain A, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
Arthrobacter Aurescens Tc1 Complexed With Zinc
pdb|3LS9|B Chain B, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
Arthrobacter Aurescens Tc1 Complexed With Zinc
Length = 456
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 147/335 (43%), Gaps = 22/335 (6%)
Query: 22 ISTLLCGIELIHSGVTCFAEA-GGQHVSEMAKAVELLGLRACLVQSTMDCGE---GLPAS 77
+ +LL GI + F A ++ +A LG+R +S+M G+ G
Sbjct: 116 LESLLGGITTVADQHLFFPGATADSYIDATIEAATDLGIRFHAARSSMTLGKSEGGFCDD 175
Query: 78 WAVRTTDDCIQSQKELYAKHHHAAD-GRIRIWFGIRQIMNATDRLLLETRDMAREFKTGI 136
V D +Q L ++H G +RI G + L MA ++ +
Sbjct: 176 LFVEPVDRVVQHCLGLIDQYHEPEPFGMVRIALGPCGVPYDKPELFEAFAQMAADYDVRL 235
Query: 137 HMHVAEIPYENQVVMDTRKVDH--GTVT--FLDKIEFLQNNLLSAHTVWVNHTEIGLLSR 192
H H E +D DH G FL+K + + + AH V EI +
Sbjct: 236 HTHFYE-------PLDAGMSDHLYGMTPWRFLEKHGWASDRVWLAHAVVPPREEIPEFAD 288
Query: 193 AGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKG 251
AGV ++H A +RM G API+E L A I V GT G+ SN+ +++ ++ LA+L ++
Sbjct: 289 AGVAIAHLIAPDLRMGWGLAPIREYLDAGITVGFGTTGSASNDGGNLLGDLRLAALAHRP 348
Query: 252 REVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVP 311
A+ L A +LRMAT G+ L D+G LE G+ AD+ V
Sbjct: 349 ----ADPNEPEKWLSARELLRMAT-RGSAECLGRPDLGVLEEGRAADIACWRLDGVDRVG 403
Query: 312 VHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 346
VHD L+ ++ V+ NGQ +++N++ +L
Sbjct: 404 VHDPAIGLIMTGLSDRASLVVVNGQVLVENERPVL 438
>pdb|3LSB|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Ametrin
pdb|3LSB|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Ametrin
pdb|3LSC|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Atraton
pdb|3LSC|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Atraton
Length = 456
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 147/335 (43%), Gaps = 22/335 (6%)
Query: 22 ISTLLCGIELIHSGVTCFAEA-GGQHVSEMAKAVELLGLRACLVQSTMDCGE---GLPAS 77
+ +LL GI + F A ++ +A LG+R +S+M G+ G
Sbjct: 116 LESLLGGITTVADQHLFFPGATADSYIDATIEAATDLGIRFHAARSSMTLGKSEGGFCDD 175
Query: 78 WAVRTTDDCIQSQKELYAKHHHAAD-GRIRIWFGIRQIMNATDRLLLETRDMAREFKTGI 136
V D +Q L ++H G +RI G + L MA ++ +
Sbjct: 176 LFVEPVDRVVQHCLGLIDQYHEPEPFGMVRIALGPCGVPYDKPELFEAFAQMAADYDVRL 235
Query: 137 HMHVAEIPYENQVVMDTRKVDH--GTVT--FLDKIEFLQNNLLSAHTVWVNHTEIGLLSR 192
H H + +D DH G FL+K + + + AH V EI +
Sbjct: 236 HTHFYQ-------PLDAGMSDHLYGMTPWRFLEKHGWASDRVWLAHAVVPPREEIPEFAD 288
Query: 193 AGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKG 251
AGV ++H A +RM G API+E L A I V GT G+ SN+ +++ ++ LA+L ++
Sbjct: 289 AGVAIAHLIAPDLRMGWGLAPIREYLDAGITVGFGTTGSASNDGGNLLGDLRLAALAHRP 348
Query: 252 REVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVP 311
A+ L A +LRMAT G+ L D+G LE G+ AD+ V
Sbjct: 349 ----ADPNEPEKWLSARELLRMAT-RGSAECLGRPDLGVLEEGRAADIACWRLDGVDRVG 403
Query: 312 VHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 346
VHD L+ ++ V+ NGQ +++N++ +L
Sbjct: 404 VHDPAIGLIMTGLSDRASLVVVNGQVLVENERPVL 438
>pdb|2PAJ|A Chain A, Crystal Structure Of An Amidohydrolase From An
Environmental Sample Of Sargasso Sea
Length = 492
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 163/369 (44%), Gaps = 34/369 (9%)
Query: 3 WLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMA--------KAV 54
WL + + + E ++ + IEL SG A+ + M +
Sbjct: 98 WLAATPYRFRALFDERRFRLAARIGLIELARSGCATVADHNYVYYPGMPFDSSAILFEEA 157
Query: 55 ELLGLRACLVQS----TMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIR--IW 108
E LGLR L++ T LP + T D + + L A++H A+ +R +
Sbjct: 158 EKLGLRFVLLRGGATQTRQLEADLPTALRPETLDAYVADIERLAARYHDASPRAMRRVVM 217
Query: 109 FGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE-IPYENQVVMDTRKVDHGTVTFLDKI 167
+ + + R + ET +AR +H H++E + Y++ K V F +
Sbjct: 218 APTTVLYSISPREMRETAAVARRLGLRMHSHLSETVGYQDSAYSMYGK---SPVAFCGEH 274
Query: 168 EFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLG 226
++L +++ AH V V+ EI LL++ G V+HCP S R+ G P++EM A + VS+G
Sbjct: 275 DWLGSDVWYAHLVKVDADEIALLAQTGTGVAHCPQSNGRLGSGICPVREMADAGVPVSIG 334
Query: 227 TDGAPSNNRMSIVDEMYLASLINKGR------EVFANGTTDPAALPAET--VLRMATING 278
DGA SN ++ E+++ L + R + G+ + A A V+ T G
Sbjct: 335 VDGAASNEAADMISEVHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGG 394
Query: 279 AKSVLWDNDIGSLEAGKKADMVVV---DPFSWPMVPVHDRITSLVYCMRTENVVSVMCNG 335
A+ V+ +++G + G AD+ V DP + + HD V +V+++ G
Sbjct: 395 AR-VMGLDEVGKVAVGYAADIAVYRLDDPRYFGL---HDPAIGPVASGGRPSVMALFSAG 450
Query: 336 QWVMKNKKI 344
+ V+ + I
Sbjct: 451 KRVVVDDLI 459
>pdb|2UZ9|A Chain A, Human Guanine Deaminase (Guad) In Complex With Zinc And
Its Product Xanthine.
pdb|4AQL|A Chain A, Human Guanine Deaminase In Complex With Valacyclovir
Length = 476
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 122/261 (46%), Gaps = 17/261 (6%)
Query: 50 MAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWF 109
+A + G RA + + MD + P TT++ I+ + ++ R++
Sbjct: 175 LADITDKFGQRAFVGKVCMDLNDTFPE--YKETTEESIKETERFVSEMLQKNYSRVKPIV 232
Query: 110 GIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEF 169
R ++ ++ L+ E ++A+ I H++E E + V + + DK
Sbjct: 233 TPRFSLSCSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNL 292
Query: 170 LQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTD 228
L N + AH +++ E+ + G ++HCP S + + GF + E+L ++ + LGTD
Sbjct: 293 LTNKTVMAHGCYLSAEELNVFHERGASIAHCPNSNLSLSSGFLNVLEVLKHEVKIGLGTD 352
Query: 229 --GAPSNNRMSIVDEMYLAS---LINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 283
G S + + + + S LINK E +L + V R+AT+ G++++
Sbjct: 353 VAGGYSYSMLDAIRRAVMVSNILLINKVNE---------KSLTLKEVFRLATLGGSQALG 403
Query: 284 WDNDIGSLEAGKKADMVVVDP 304
D +IG+ E GK+ D ++++P
Sbjct: 404 LDGEIGNFEVGKEFDAILINP 424
>pdb|3E0L|A Chain A, Computationally Designed Ammelide Deaminase
pdb|3E0L|B Chain B, Computationally Designed Ammelide Deaminase
Length = 455
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 120/261 (45%), Gaps = 19/261 (7%)
Query: 50 MAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWF 109
+A + G RA + + MD + P TT++ I+ + ++ R++
Sbjct: 156 LADITDKFGQRAFVGKVCMDLNDTFPE--YKETTEESIKETERFVSEMLQKNYSRVKPI- 212
Query: 110 GIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEF 169
+ ++ L+ E ++A+ I H++E E + V + + DK
Sbjct: 213 -VTPGNGVSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNL 271
Query: 170 LQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTD 228
L N + AH +++ E+ + G ++HCP S + + GF + E+L ++ + LGTD
Sbjct: 272 LTNKTVMAHGCYLSAEELNVFHERGASIAHCPNSNLSLSSGFLNVLEVLKHEVKIGLGTD 331
Query: 229 --GAPSNNRMSIVDEMYLAS---LINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 283
G S + + + + S LINK E +L + V R+AT+ G++++
Sbjct: 332 VAGGYSYSMLDAIRRAVMVSNILLINKVNE---------KSLTLKEVFRLATLGGSQALG 382
Query: 284 WDNDIGSLEAGKKADMVVVDP 304
D +IG+ E GK+ D ++++P
Sbjct: 383 LDGEIGNFEVGKEFDAILINP 403
>pdb|2OOD|A Chain A, Crystal Structure Of Guanine Deaminase From Bradyrhizobium
Japonicum
Length = 475
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 101/247 (40%), Gaps = 24/247 (9%)
Query: 75 PASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT 134
PA + + T ++ + K L A++H GR R A+ LL + + E
Sbjct: 172 PAEF-IDTPENFYRDSKRLIAQYHDK--GRNLYAITPRFAFGASPELLKACQRLKHEHPD 228
Query: 135 G-IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRA 193
++ H++E P E V+ + +K + + H V++++ E S+
Sbjct: 229 CWVNTHISENPAECSGVLVEHPDCQDYLGVYEKFDLVGPKFSGGHGVYLSNNEFRRXSKK 288
Query: 194 GVKVSHCPASAMRMLGFAPIKEMLHAD----ICVSLGTD--GAPSNNRMSIVDEMYLASL 247
G V CP S + LG + D + S GTD G + +S++D+ Y
Sbjct: 289 GAAVVFCPCSNL-FLGSGLFRLGRATDPEHRVKXSFGTDVGGGNRFSXISVLDDAYKVGX 347
Query: 248 INKGREVFANGTTDPAALPAETVLR----------MATINGAKSVLWDNDIGSLEAGKKA 297
N +G+ DP+ R T+ GA+ + D+ +G+ E GK+A
Sbjct: 348 CNN---TLLDGSIDPSRKDLAEAERNKLSPYRGFWSVTLGGAEGLYIDDKLGNFEPGKEA 404
Query: 298 DMVVVDP 304
D V +DP
Sbjct: 405 DFVALDP 411
>pdb|2I9U|A Chain A, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
pdb|2I9U|B Chain B, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
Length = 439
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 75/352 (21%), Positives = 139/352 (39%), Gaps = 22/352 (6%)
Query: 1 MTWLHDRIWPYESNMTEEDSYISTLLCGI-ELIHSGVTCFAEAGGQHVSEMAKAVELL-- 57
+ WL++ +P E+ D T I +LI +G T A H + +L
Sbjct: 91 LPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGTTRVALFATLHKDSTIELFNMLIK 150
Query: 58 -GLRACLVQSTMD--CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQI 114
G+ A + + MD C + L ++ D +E+ K+ ++ ++ R +
Sbjct: 151 SGIGAYVGKVNMDYNCPDYLTENYITSLND-----TEEIILKYKDKSN-IVKPIITPRFV 204
Query: 115 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNN- 173
+ ++ L+ ++ +++ + H++E E VV K + DK N
Sbjct: 205 PSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVKSLHKKSNFYGEVYDKFGLFGNTP 264
Query: 174 LLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPS 232
L AH + + EI L+ R V + HCP S + G P+++ L+ I V LG+D +
Sbjct: 265 TLMAHCIHSSKEEINLIKRNNVTIVHCPTSNFNLGSGMMPVRKYLNLGINVVLGSD-ISA 323
Query: 233 NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLE 292
+ S+ +A I + + L MAT G + +GS E
Sbjct: 324 GHTCSLFK--VIAYAIQNSKIKWQESGKKDMFLSTSEAFYMATKKGGS---FFGKVGSFE 378
Query: 293 AGKKADMVVV-DPFSWPM-VPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 342
G D +V+ D +P + +R+ +Y N++ G + K
Sbjct: 379 EGYDFDALVINDSNLYPEDYDLTERLERFIYLGDDRNIMKRYVCGNEIFGPK 430
>pdb|3V7P|A Chain A, Crystal Structure Of Amidohydrolase Nis_0429 (Target
Efi-500396) From Nitratiruptor Sp. Sb155-2
Length = 427
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 15/156 (9%)
Query: 148 QVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM 207
+ + TR V+ T +FL+ F + + L H VW N EI ++ + HCP S R+
Sbjct: 230 EFLNQTRPVN-DTKSFLEL--FKELHTLFVHMVWANEEEIQTIASYNAHIIHCPISN-RL 285
Query: 208 LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPA 267
LG + I ++ TDG SN +++ +E+ A ++ +E TT
Sbjct: 286 LGNGVLDLEKIKSIPYAIATDGLSSNYSLNMYEELKAALFVHPNKE----ATT----FAK 337
Query: 268 ETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 303
E ++R AT G ++ ++ G + GK ADM ++D
Sbjct: 338 ELIIR-ATKAGYDALGFEG--GEIAVGKDADMQLID 370
>pdb|2BB0|A Chain A, Structure Of Imidazolonepropionase From Bacillus Subtilis
pdb|2BB0|B Chain B, Structure Of Imidazolonepropionase From Bacillus Subtilis
pdb|2G3F|A Chain A, Crystal Structure Of Imidazolonepropionase Complexed With
Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
pdb|2G3F|B Chain B, Crystal Structure Of Imidazolonepropionase Complexed With
Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
Length = 421
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 19/156 (12%)
Query: 178 HTVWVNHTEIGLLSRAGVKVSHCPASAMRMLG---FAPIKEMLHADICVSLGTDGAP-SN 233
H V + I L+ AG P + LG +A + M+ +CVSL TD P S+
Sbjct: 272 HLVGTSDEGIKKLAEAGTIAVLLPGTTF-YLGKSTYARARAMIDEGVCVSLATDFNPGSS 330
Query: 234 NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEA 293
+I M +A+L K + AE + T+N A ++ + G L+A
Sbjct: 331 PTENIQLIMSIAALHLK--------------MTAEEIWHAVTVNAAYAIGKGEEAGQLKA 376
Query: 294 GKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVV 329
G+ AD+V+ ++ +P H + + M+ +V
Sbjct: 377 GRSADLVIWQAPNYMYIPYHYGVNHVHQVMKNGTIV 412
>pdb|2PUZ|A Chain A, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
pdb|2PUZ|B Chain B, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
Length = 419
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 23/154 (14%)
Query: 173 NLLSA-HTVWVNHTEIGLLSRAGVKVSHCPAS--AMRMLGFAPIKEMLHADICVSLGTDG 229
N LSA H +++ T L++AG P + A+R P++ + A ++L TD
Sbjct: 271 NALSADHLEYLDETGAKALAKAGTVAVLLPGAFYALREKQLPPVQALRDAGAEIALATDC 330
Query: 230 APSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 289
P + ++ L +N G +F + E L T N AK++ + G
Sbjct: 331 NPGTSPLT-----SLLLTMNMGATLFR--------MTVEECLTATTRNAAKALGLLAETG 377
Query: 290 SLEAGKKADMVVVD---P----FSWPMVPVHDRI 316
+LEAGK AD + D P + P+H RI
Sbjct: 378 TLEAGKSADFAIWDIERPAELVYRIGFNPLHARI 411
>pdb|2GOK|A Chain A, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
pdb|2GOK|B Chain B, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
Length = 429
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 23/154 (14%)
Query: 173 NLLSA-HTVWVNHTEIGLLSRAGVKVSHCPAS--AMRMLGFAPIKEMLHADICVSLGTDG 229
N LSA H +++ T L++AG P + A+R P++ + A ++L TD
Sbjct: 273 NALSADHLEYLDETGAKALAKAGTVAVLLPGAFYALREKQLPPVQALRDAGAEIALATDC 332
Query: 230 APSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 289
P + ++ L +N G +F + E L T N AK++ + G
Sbjct: 333 NPGTSPLT-----SLLLTMNMGATLFR--------MTVEECLTATTRNAAKALGLLAETG 379
Query: 290 SLEAGKKADMVVVD---P----FSWPMVPVHDRI 316
+LEAGK AD + D P + P+H RI
Sbjct: 380 TLEAGKSADFAIWDIERPAELVYRIGFNPLHARI 413
>pdb|2IMR|A Chain A, Crystal Structure Of Amidohydrolase Dr_0824 From
Deinococcus Radiodurans
Length = 420
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Query: 148 QVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM 207
+V+ D V +LD++ L H V V +I ++RAG V CP S +
Sbjct: 273 EVIGREPGPDLTPVRYLDELGVLAARPTLVHMVNVTPDDIARVARAGCAVVTCPRSNHHL 332
Query: 208 -LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKG 251
G A + V+LGTD S +++ +E+ A + G
Sbjct: 333 ECGTFDWPAFAAAGVEVALGTDSVASGETLNVREEVTFARQLYPG 377
>pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|B Chain B, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|C Chain C, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|D Chain D, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|E Chain E, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|F Chain F, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|G Chain G, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|H Chain H, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|I Chain I, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|J Chain J, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
Length = 396
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 268 ETVLRMATINGAKSVLWDNDIGSLEAGKKADMVV 301
E +L++ T+N AK + ++ IGS+E GK AD+VV
Sbjct: 330 EDLLKILTVNPAKILGLEDRIGSIEPGKDADLVV 363
>pdb|1M7J|A Chain A, Crystal Structure Of D-Aminoacylase Defines A Novel Subset
Of Amidohydrolases
Length = 484
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 15/154 (9%)
Query: 201 PASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTT 260
PA A+ + P + + A +G+DG P DE L V + +
Sbjct: 340 PAGAIYFMMDEPDVQRILAFGPTMIGSDGLPH-------DERPHPRLWGTFPRVLGHYSR 392
Query: 261 DPAALPAET-VLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSL 319
D P ET V +M + AK L + G ++ G AD+VV DP + V D T
Sbjct: 393 DLGLFPLETAVWKMTGLTAAKFGLAER--GQVQPGYYADLVVFDPAT-----VADSATFE 445
Query: 320 VYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLF 353
R + SV NG V +++ GR+
Sbjct: 446 HPTERAAGIHSVYVNGAAVWEDQSFTGQHAGRVL 479
>pdb|1RJP|A Chain A, Crystal Structure Of D-Aminoacylase In Complex With 100mm
Cucl2
pdb|1RK6|A Chain A, The Enzyme In Complex With 50mm Cdcl2
pdb|1V51|A Chain A, The Functional Role Of The Binuclear Metal Center In D-
Aminoacylase. One-Metal Activation And Second-Metal
Attenuation
Length = 496
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 15/154 (9%)
Query: 201 PASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTT 260
PA A+ + P + + A +G+DG P DE L V + +
Sbjct: 352 PAGAIYFMMDEPDVQRILAFGPTMIGSDGLPH-------DERPHPRLWGTFPRVLGHYSR 404
Query: 261 DPAALPAET-VLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSL 319
D P ET V +M + AK L + G ++ G AD+VV DP + V D T
Sbjct: 405 DLGLFPLETAVWKMTGLTAAKFGLAER--GQVQPGYYADLVVFDPAT-----VADSATFE 457
Query: 320 VYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLF 353
R + SV NG V +++ GR+
Sbjct: 458 HPTERAAGIHSVYVNGAAVWEDQSFTGQHAGRVL 491
>pdb|1V4Y|A Chain A, The Functional Role Of The Binuclear Metal Center In D-
Aminoacylase. One-Metal Activation And Second-Metal
Attenuation
Length = 496
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 57/149 (38%), Gaps = 25/149 (16%)
Query: 206 RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAAL 265
R+L F P +G+DG P DE L V + + D
Sbjct: 367 RILAFGPTM----------IGSDGLPH-------DERPHPRLWGTFPRVLGHYSRDLGLF 409
Query: 266 PAETVL-RMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 324
P ET + +M + AK L + G ++ G AD+VV DP + V D T R
Sbjct: 410 PLETAVWKMTGLTAAKFGLAER--GQVQPGYYADLVVFDPAT-----VADSATFEHPTER 462
Query: 325 TENVVSVMCNGQWVMKNKKILLLMRGRLF 353
+ SV NG V +++ GR+
Sbjct: 463 AAGIHSVYVNGAAVWEDQSFTGQHAGRVL 491
>pdb|2P53|A Chain A, Crystal Structure Of N-acetyl-d-glucosamine-6-phosphate
Deacetylase D273n Mutant Complexed With N-acetyl
Phosphonamidate-d-glucosamine-6- Phosphate
pdb|2P53|B Chain B, Crystal Structure Of N-acetyl-d-glucosamine-6-phosphate
Deacetylase D273n Mutant Complexed With N-acetyl
Phosphonamidate-d-glucosamine-6- Phosphate
Length = 382
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 268 ETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDP 304
+ VLRMAT+ A+++ + +G+L AGK A++ P
Sbjct: 329 DEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTP 365
>pdb|1YMY|A Chain A, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12
pdb|1YMY|B Chain B, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12
pdb|1YRR|A Chain A, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12 At 2.0 A
Resolution
pdb|1YRR|B Chain B, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12 At 2.0 A
Resolution
pdb|2P50|A Chain A, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
pdb|2P50|B Chain B, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
pdb|2P50|C Chain C, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
pdb|2P50|D Chain D, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
Length = 382
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 268 ETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDP 304
+ VLRMAT+ A+++ + +G+L AGK A++ P
Sbjct: 329 DEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTP 365
>pdb|3NQB|A Chain A, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3NQB|B Chain B, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3T81|A Chain A, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T81|B Chain B, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T8L|A Chain A, Crystal Structure Of Adenine Deaminase With MnFE
pdb|3T8L|B Chain B, Crystal Structure Of Adenine Deaminase With MnFE
Length = 608
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 264 ALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 303
L E LR AT+N A+ L +D+G + AG++AD+VV +
Sbjct: 316 GLKPEWALRAATLNAAQR-LGRSDLGLIAAGRRADIVVFE 354
>pdb|2QS8|A Chain A, Crystal Structure Of A Xaa-Pro Dipeptidase With Bound
Methionine In The Active Site
pdb|2QS8|B Chain B, Crystal Structure Of A Xaa-Pro Dipeptidase With Bound
Methionine In The Active Site
Length = 418
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 266 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV 302
PA ++ AT AK + ++ +GS+E+GK AD++ V
Sbjct: 350 PAXKAIQSATXETAKLLRIEDKLGSIESGKLADLIAV 386
>pdb|2KZ4|A Chain A, Solution Structure Of Protein Sf1141 From Shigella
Flexneri 2a, Northeast Structural Genomics Consortium
(Nesg) Target Sft2
Length = 112
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 64 VQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLL 123
+ T + G L AS + ++ + I S EL A G +RIW R+ +NAT R+ +
Sbjct: 25 ILETWEDGHTLWASVNMVSSKEAISSGAEL-------AIGTVRIWIRYRKDINATSRIKV 77
Query: 124 ETRDMA 129
T +A
Sbjct: 78 STGPLA 83
>pdb|3MDU|A Chain A, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
From Pseudomonas Aeruginosa Complexed With
N-Guanidino-L-Glutamate
pdb|3MDW|A Chain A, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
From Pseudomonas Aeruginosa Complexed With
N-Formimino-L-Aspartate
pdb|3MDW|B Chain B, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
From Pseudomonas Aeruginosa Complexed With
N-Formimino-L-Aspartate
pdb|3MDW|C Chain C, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
From Pseudomonas Aeruginosa Complexed With
N-Formimino-L-Aspartate
pdb|3MDW|D Chain D, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
From Pseudomonas Aeruginosa Complexed With
N-Formimino-L-Aspartate
Length = 453
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 75/173 (43%), Gaps = 15/173 (8%)
Query: 178 HTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRM 236
H + E+ ++R+G C ++ + G P + L + +G+D S+ +
Sbjct: 269 HATHADPAEVAAMARSGAVAGLCLSTEANLGDGIFPATDFLAQGGRLGIGSD---SHVSL 325
Query: 237 SIVDEM----YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLE 292
S+V+E+ Y L ++ R D + T+ A GA+++ IGSL
Sbjct: 326 SVVEELRWLEYGQRLRDRKRNRL---YRDDQPMIGRTLYDAALAGGAQALG--QPIGSLA 380
Query: 293 AGKKADMVVVDPFSWPMVPVHDR--ITSLVYCMRTENVVSVMCNGQWVMKNKK 343
G++AD++V+D + + ++ V VM G+WV+++ +
Sbjct: 381 VGRRADLLVLDGNDPYLASAEGDALLNRWLFAGGDRQVRDVMVAGRWVVRDGR 433
>pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase
pdb|1K1D|B Chain B, Crystal Structure Of D-Hydantoinase
pdb|1K1D|C Chain C, Crystal Structure Of D-Hydantoinase
pdb|1K1D|D Chain D, Crystal Structure Of D-Hydantoinase
pdb|1K1D|E Chain E, Crystal Structure Of D-Hydantoinase
pdb|1K1D|F Chain F, Crystal Structure Of D-Hydantoinase
pdb|1K1D|G Chain G, Crystal Structure Of D-Hydantoinase
pdb|1K1D|H Chain H, Crystal Structure Of D-Hydantoinase
Length = 460
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 289 GSLEAGKKADMVVVDPFSWPMVPVHDRITSLVY----CMR-TENVVSVMCNGQWVMKNKK 343
G++ G AD+V+ DP ++ ++ Y M+ T VSV+C G++V+++K+
Sbjct: 383 GTIVVGSDADLVIFDPNIERVISAETHHMAVDYNAFEGMKVTGEPVSVLCRGEFVVRDKQ 442
Query: 344 IL 345
+
Sbjct: 443 FV 444
>pdb|3EGJ|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae.
pdb|3EGJ|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae.
pdb|3IV8|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|C Chain C, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|D Chain D, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
Length = 381
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 20/79 (25%)
Query: 259 TTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITS 318
T + + + LRMAT+ AK++ D +G ++ G A++ V D
Sbjct: 320 TVEHVGIALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLTVFD--------------- 364
Query: 319 LVYCMRTENVVSVMCNGQW 337
R NV + + NGQ+
Sbjct: 365 -----RDFNVKATVVNGQY 378
>pdb|2P9B|A Chain A, Crystal Structure Of Putative Prolidase From
Bifidobacterium Longum
Length = 458
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 266 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 303
PAE L AT A + D + GSLE GK AD++V++
Sbjct: 371 PAE-ALHAATAVNASILGVDAETGSLEVGKSADLLVLN 407
>pdb|2QT3|A Chain A, Crystal Structure Of N-Isopropylammelide
Isopropylaminohydrolase Atzc From Pseudomonas Sp. Strain
Adp Complexed With Zn
pdb|2QT3|B Chain B, Crystal Structure Of N-Isopropylammelide
Isopropylaminohydrolase Atzc From Pseudomonas Sp. Strain
Adp Complexed With Zn
Length = 403
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 16/78 (20%)
Query: 270 VLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFS--WPMVPVHDRITSLVYCMRTEN 327
+ +M T GA+ + + + G +E GKKAD+VV++ S W ++ R+
Sbjct: 339 IWKMITSEGARVLGIEKNYG-IEVGKKADLVVLNSLSPQWAIIDQAKRLC---------- 387
Query: 328 VVSVMCNGQWVMKNKKIL 345
V+ NG+ ++K++ I+
Sbjct: 388 ---VIKNGRIIVKDEVIV 402
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,647,996
Number of Sequences: 62578
Number of extensions: 410425
Number of successful extensions: 1194
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1112
Number of HSP's gapped (non-prelim): 52
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)