Query 017969
Match_columns 363
No_of_seqs 253 out of 2015
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:01:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0771 MurD UDP-N-acetylmuram 100.0 2.9E-61 6.4E-66 463.6 33.6 315 4-343 72-388 (448)
2 TIGR01087 murD UDP-N-acetylmur 100.0 1.2E-57 2.7E-62 449.3 36.6 311 4-343 65-376 (433)
3 PRK01368 murD UDP-N-acetylmura 100.0 1.4E-57 3E-62 448.9 35.4 314 4-343 66-385 (454)
4 PRK04663 murD UDP-N-acetylmura 100.0 6.4E-57 1.4E-61 444.2 35.3 302 4-334 71-375 (438)
5 PRK03369 murD UDP-N-acetylmura 100.0 7.8E-57 1.7E-61 448.2 35.2 318 4-352 73-403 (488)
6 PRK04308 murD UDP-N-acetylmura 100.0 2.4E-56 5.3E-61 441.4 35.9 314 4-343 70-387 (445)
7 PRK03803 murD UDP-N-acetylmura 100.0 3.1E-56 6.6E-61 441.0 36.1 311 4-343 71-389 (448)
8 PRK01710 murD UDP-N-acetylmura 100.0 2.7E-56 5.9E-61 442.0 35.1 312 4-342 80-393 (458)
9 PRK02705 murD UDP-N-acetylmura 100.0 3.3E-55 7.1E-60 435.2 36.2 318 4-343 71-393 (459)
10 PRK02472 murD UDP-N-acetylmura 100.0 4.8E-55 1E-59 432.7 36.0 316 4-343 71-386 (447)
11 PRK03806 murD UDP-N-acetylmura 100.0 2.6E-54 5.6E-59 426.2 35.8 310 4-342 68-381 (438)
12 PRK01390 murD UDP-N-acetylmura 100.0 3.7E-54 7.9E-59 427.5 34.8 317 4-343 68-397 (460)
13 PRK04690 murD UDP-N-acetylmura 100.0 5E-54 1.1E-58 426.0 35.4 313 4-342 72-391 (468)
14 PRK00141 murD UDP-N-acetylmura 100.0 7.6E-54 1.7E-58 425.4 36.2 316 4-343 77-400 (473)
15 PRK01438 murD UDP-N-acetylmura 100.0 9.3E-54 2E-58 426.9 35.2 318 4-343 81-411 (480)
16 PRK14106 murD UDP-N-acetylmura 100.0 1.7E-52 3.8E-57 414.8 36.1 319 4-343 71-391 (450)
17 TIGR01081 mpl UDP-N-acetylmura 100.0 1.1E-52 2.4E-57 415.4 32.6 310 4-333 63-388 (448)
18 PRK10773 murF UDP-N-acetylmura 100.0 2E-53 4.3E-58 420.7 27.0 283 42-340 99-400 (453)
19 PRK02006 murD UDP-N-acetylmura 100.0 4.1E-52 8.9E-57 416.3 35.9 320 4-342 72-431 (498)
20 TIGR01082 murC UDP-N-acetylmur 100.0 4.1E-52 8.8E-57 411.3 33.0 316 4-343 61-402 (448)
21 PRK00421 murC UDP-N-acetylmura 100.0 1.5E-51 3.3E-56 408.7 32.8 305 4-331 69-386 (461)
22 COG0770 MurF UDP-N-acetylmuram 100.0 2.9E-52 6.2E-57 405.1 26.3 289 41-345 101-407 (451)
23 TIGR01143 murF UDP-N-acetylmur 100.0 1.1E-51 2.3E-56 404.8 27.3 284 42-342 73-373 (417)
24 COG0773 MurC UDP-N-acetylmuram 100.0 5.4E-50 1.2E-54 381.6 32.2 308 3-331 68-388 (459)
25 PRK03815 murD UDP-N-acetylmura 100.0 1.4E-49 3.1E-54 385.6 30.4 285 4-342 57-342 (401)
26 PRK14093 UDP-N-acetylmuramoyla 100.0 4.3E-50 9.4E-55 399.4 26.5 286 42-342 107-418 (479)
27 PRK14573 bifunctional D-alanyl 100.0 1.5E-47 3.2E-52 402.7 31.1 301 4-331 66-378 (809)
28 PRK00683 murD UDP-N-acetylmura 100.0 2.2E-47 4.8E-52 374.3 28.3 292 4-343 62-357 (418)
29 PRK11929 putative bifunctional 100.0 2.3E-47 5E-52 408.9 28.0 286 42-343 602-913 (958)
30 PRK11930 putative bifunctional 100.0 7.2E-47 1.6E-51 398.4 27.2 283 41-342 105-408 (822)
31 PRK00139 murE UDP-N-acetylmura 100.0 4.8E-46 1E-50 368.9 26.8 270 42-333 94-386 (460)
32 TIGR01085 murE UDP-N-acetylmur 100.0 1.7E-45 3.6E-50 365.9 26.9 280 42-334 84-396 (464)
33 PRK14022 UDP-N-acetylmuramoyla 100.0 4.8E-45 1E-49 363.7 23.6 284 41-343 108-418 (481)
34 PRK11929 putative bifunctional 100.0 3.1E-43 6.8E-48 377.1 26.3 281 41-333 110-421 (958)
35 TIGR01499 folC folylpolyglutam 100.0 1.6E-42 3.5E-47 338.0 23.9 268 42-331 17-338 (397)
36 TIGR02068 cya_phycin_syn cyano 100.0 4.8E-40 1E-44 345.7 29.0 283 41-332 477-793 (864)
37 PLN02913 dihydrofolate synthet 100.0 7E-40 1.5E-44 326.5 25.9 288 29-331 58-430 (510)
38 COG0285 FolC Folylpolyglutamat 100.0 9.5E-40 2.1E-44 313.9 23.1 278 29-331 27-361 (427)
39 COG0769 MurE UDP-N-acetylmuram 100.0 5E-39 1.1E-43 315.9 26.4 281 41-333 89-396 (475)
40 PRK10846 bifunctional folylpol 100.0 4E-39 8.6E-44 315.5 25.6 276 28-330 31-355 (416)
41 PLN02881 tetrahydrofolylpolygl 100.0 1.4E-36 3E-41 298.8 26.5 258 42-333 60-423 (530)
42 PRK14016 cyanophycin synthetas 100.0 8.3E-34 1.8E-38 293.5 16.4 250 8-261 446-726 (727)
43 PF08245 Mur_ligase_M: Mur lig 100.0 1.7E-32 3.6E-37 240.5 17.7 176 48-235 1-188 (188)
44 KOG2525 Folylpolyglutamate syn 100.0 6.6E-31 1.4E-35 249.3 16.3 248 42-323 71-390 (496)
45 PF02875 Mur_ligase_C: Mur lig 99.3 2.6E-12 5.6E-17 98.9 6.3 77 255-334 1-82 (91)
46 COG1703 ArgK Putative periplas 96.5 0.025 5.3E-07 52.3 9.8 117 42-169 50-204 (323)
47 PRK09435 membrane ATPase/prote 94.3 0.45 9.7E-06 45.3 10.5 114 41-165 54-205 (332)
48 PF00485 PRK: Phosphoribulokin 92.7 0.11 2.4E-06 45.4 3.4 27 45-71 1-29 (194)
49 cd01983 Fer4_NifH The Fer4_Nif 92.6 0.78 1.7E-05 34.1 7.7 29 46-74 2-32 (99)
50 PRK15453 phosphoribulokinase; 91.9 0.29 6.4E-06 45.3 5.2 29 41-69 3-33 (290)
51 TIGR03172 probable selenium-de 91.2 0.28 6E-06 44.2 4.1 33 45-77 1-33 (232)
52 COG1763 MobB Molybdopterin-gua 89.9 0.48 1E-05 40.2 4.3 38 43-80 2-41 (161)
53 PRK06696 uridine kinase; Valid 89.8 0.81 1.8E-05 40.9 6.0 34 41-74 20-55 (223)
54 PRK07667 uridine kinase; Provi 89.1 1.1 2.5E-05 39.0 6.3 31 42-72 16-48 (193)
55 PHA02519 plasmid partition pro 89.1 0.62 1.3E-05 45.4 5.0 34 42-75 105-141 (387)
56 PRK13869 plasmid-partitioning 88.8 0.65 1.4E-05 45.6 5.0 34 42-75 120-156 (405)
57 COG0132 BioD Dethiobiotin synt 88.8 0.66 1.4E-05 41.5 4.6 32 43-74 2-36 (223)
58 PRK00652 lpxK tetraacyldisacch 88.7 0.66 1.4E-05 44.1 4.8 34 42-75 48-85 (325)
59 PRK13705 plasmid-partitioning 88.5 0.66 1.4E-05 45.3 4.8 34 42-75 105-141 (388)
60 PHA02518 ParA-like protein; Pr 88.4 0.75 1.6E-05 40.3 4.7 30 45-74 2-34 (211)
61 TIGR01007 eps_fam capsular exo 88.3 1.1 2.4E-05 39.2 5.7 33 42-74 16-51 (204)
62 TIGR03029 EpsG chain length de 88.3 1.1 2.4E-05 41.2 6.0 34 41-74 101-137 (274)
63 cd02117 NifH_like This family 87.8 0.87 1.9E-05 40.3 4.7 30 45-74 2-33 (212)
64 cd03114 ArgK-like The function 87.7 3.3 7.1E-05 34.5 7.9 107 46-164 2-147 (148)
65 COG2894 MinD Septum formation 87.6 0.73 1.6E-05 41.0 3.9 37 44-80 3-43 (272)
66 PRK14494 putative molybdopteri 87.5 0.89 1.9E-05 40.9 4.6 32 44-75 2-35 (229)
67 PF03205 MobB: Molybdopterin g 87.1 0.96 2.1E-05 37.4 4.3 32 44-75 1-34 (140)
68 cd02028 UMPK_like Uridine mono 87.1 0.9 1.9E-05 39.2 4.3 29 45-73 1-31 (179)
69 COG0769 MurE UDP-N-acetylmuram 86.9 0.4 8.8E-06 48.0 2.3 122 14-139 36-162 (475)
70 COG1936 Predicted nucleotide k 86.7 0.63 1.4E-05 39.8 3.0 26 44-73 1-28 (180)
71 cd02029 PRK_like Phosphoribulo 86.6 0.92 2E-05 41.8 4.2 26 45-70 1-28 (277)
72 PRK13232 nifH nitrogenase redu 86.5 1.1 2.3E-05 41.4 4.8 32 44-75 2-35 (273)
73 TIGR03453 partition_RepA plasm 86.2 1.1 2.5E-05 43.6 5.0 34 42-75 103-139 (387)
74 PF06564 YhjQ: YhjQ protein; 85.9 0.76 1.6E-05 41.7 3.3 29 45-73 6-34 (243)
75 PRK05439 pantothenate kinase; 85.9 1.6 3.4E-05 41.3 5.5 27 42-68 85-113 (311)
76 PRK14493 putative bifunctional 85.9 1.3 2.7E-05 41.1 4.8 31 44-75 2-34 (274)
77 COG2403 Predicted GTPase [Gene 85.5 1.1 2.5E-05 42.7 4.3 32 42-73 125-159 (449)
78 cd03116 MobB Molybdenum is an 85.5 1.5 3.3E-05 37.0 4.8 32 44-75 2-35 (159)
79 TIGR03018 pepcterm_TyrKin exop 85.3 1.6 3.4E-05 38.5 5.0 32 42-73 34-69 (207)
80 COG4240 Predicted kinase [Gene 85.2 1.6 3.5E-05 39.1 4.8 34 42-75 49-85 (300)
81 cd02040 NifH NifH gene encodes 85.0 0.92 2E-05 41.5 3.5 26 49-74 9-34 (270)
82 TIGR00176 mobB molybdopterin-g 84.5 1.4 3E-05 37.1 4.1 32 45-76 1-34 (155)
83 TIGR00064 ftsY signal recognit 84.4 1.7 3.6E-05 40.3 4.9 35 42-76 71-107 (272)
84 TIGR03371 cellulose_yhjQ cellu 84.4 1.6 3.5E-05 39.3 4.7 32 44-75 2-36 (246)
85 PF01656 CbiA: CobQ/CobB/MinD/ 84.2 1.2 2.6E-05 38.2 3.8 30 45-74 3-32 (195)
86 COG0572 Udk Uridine kinase [Nu 84.1 0.96 2.1E-05 40.2 3.0 26 43-68 8-35 (218)
87 PRK13230 nitrogenase reductase 84.1 1.6 3.4E-05 40.4 4.7 31 44-74 2-34 (279)
88 COG1072 CoaA Panthothenate kin 83.9 2.1 4.5E-05 39.4 5.1 38 42-79 81-122 (283)
89 TIGR00554 panK_bact pantothena 83.8 2.3 5.1E-05 39.7 5.6 27 42-68 61-89 (290)
90 cd02032 Bchl_like This family 83.6 1.7 3.7E-05 39.8 4.6 29 46-74 3-33 (267)
91 PRK14974 cell division protein 83.5 1.9 4.1E-05 41.2 5.0 35 42-76 139-175 (336)
92 PRK00784 cobyric acid synthase 83.3 1.4 3.1E-05 44.3 4.3 30 44-73 3-35 (488)
93 PRK10751 molybdopterin-guanine 83.2 2.1 4.6E-05 36.8 4.7 35 42-76 5-41 (173)
94 cd02033 BchX Chlorophyllide re 83.1 2.1 4.5E-05 40.8 5.0 35 41-75 29-65 (329)
95 TIGR02016 BchX chlorophyllide 83.0 1.9 4.1E-05 40.4 4.7 30 45-74 2-33 (296)
96 PRK14495 putative molybdopteri 82.9 1.8 3.9E-05 42.6 4.6 33 43-75 1-35 (452)
97 PRK13235 nifH nitrogenase redu 82.8 2 4.4E-05 39.6 4.8 31 44-74 2-34 (274)
98 TIGR00455 apsK adenylylsulfate 82.7 3.9 8.4E-05 35.1 6.3 42 29-71 5-48 (184)
99 TIGR00041 DTMP_kinase thymidyl 82.2 2 4.3E-05 37.2 4.3 31 43-73 3-35 (195)
100 PF03308 ArgK: ArgK protein; 82.2 3.7 8E-05 37.6 6.0 114 42-167 28-180 (266)
101 COG0541 Ffh Signal recognition 82.0 2.7 5.9E-05 41.1 5.4 36 42-77 99-136 (451)
102 PRK13233 nifH nitrogenase redu 81.9 2.1 4.7E-05 39.4 4.6 32 44-75 3-37 (275)
103 PRK03846 adenylylsulfate kinas 81.8 4 8.7E-05 35.6 6.1 43 29-72 11-55 (198)
104 PRK10416 signal recognition pa 81.6 2.5 5.4E-05 40.1 5.0 35 42-76 113-149 (318)
105 cd03109 DTBS Dethiobiotin synt 81.6 3.2 7E-05 33.8 5.1 45 46-108 3-48 (134)
106 cd01672 TMPK Thymidine monopho 81.6 2.5 5.5E-05 36.3 4.7 32 45-76 2-35 (200)
107 TIGR01287 nifH nitrogenase iro 81.5 2.2 4.8E-05 39.3 4.5 30 45-74 2-33 (275)
108 TIGR01425 SRP54_euk signal rec 81.4 2.6 5.7E-05 41.6 5.2 34 43-76 100-135 (429)
109 PRK12374 putative dithiobiotin 81.2 2.4 5.2E-05 38.1 4.6 31 45-75 4-37 (231)
110 cd02025 PanK Pantothenate kina 81.0 2.1 4.6E-05 38.2 4.1 23 45-67 1-25 (220)
111 TIGR01968 minD_bact septum sit 80.9 2.5 5.4E-05 38.2 4.7 31 44-74 2-35 (261)
112 PF13500 AAA_26: AAA domain; P 80.7 2.3 5E-05 37.1 4.2 30 45-74 2-34 (199)
113 TIGR01281 DPOR_bchL light-inde 80.7 1.7 3.8E-05 39.8 3.5 26 49-74 8-33 (268)
114 cd02023 UMPK Uridine monophosp 80.4 2.2 4.7E-05 37.2 3.9 21 45-65 1-23 (198)
115 COG0552 FtsY Signal recognitio 80.3 2.2 4.8E-05 40.3 4.0 33 42-74 138-172 (340)
116 PRK05480 uridine/cytidine kina 80.3 2.1 4.5E-05 37.7 3.8 25 41-65 4-30 (209)
117 KOG3347 Predicted nucleotide k 80.2 1.7 3.6E-05 36.4 2.8 25 42-66 6-32 (176)
118 PRK11670 antiporter inner memb 80.1 2.8 6E-05 40.6 4.9 33 43-75 107-142 (369)
119 PRK00889 adenylylsulfate kinas 79.8 2.9 6.4E-05 35.5 4.5 31 42-72 3-35 (175)
120 cd02036 MinD Bacterial cell di 79.8 2.4 5.1E-05 35.9 3.9 30 46-75 5-34 (179)
121 COG3367 Uncharacterized conser 79.6 4.2 9E-05 38.2 5.5 36 42-77 147-185 (339)
122 PRK13849 putative crown gall t 79.4 2.1 4.6E-05 38.5 3.6 31 44-74 2-35 (231)
123 PTZ00301 uridine kinase; Provi 79.1 2.4 5.1E-05 37.7 3.7 25 43-67 3-29 (210)
124 PF13207 AAA_17: AAA domain; P 78.7 2.1 4.6E-05 33.7 3.0 25 45-72 1-27 (121)
125 PRK13234 nifH nitrogenase redu 78.6 3.5 7.6E-05 38.6 4.9 34 42-75 3-38 (295)
126 COG1618 Predicted nucleotide k 78.3 2.9 6.3E-05 35.4 3.7 30 43-72 5-36 (179)
127 CHL00072 chlL photochlorophyll 78.3 2.3 5.1E-05 39.7 3.6 26 49-74 8-33 (290)
128 PRK13185 chlL protochlorophyll 78.1 2.4 5.2E-05 38.9 3.6 31 44-74 3-35 (270)
129 PRK01077 cobyrinic acid a,c-di 77.5 3 6.5E-05 41.6 4.3 31 43-73 3-36 (451)
130 cd02042 ParA ParA and ParB of 77.3 3.7 8.1E-05 31.4 4.0 47 45-109 4-50 (104)
131 PF07015 VirC1: VirC1 protein; 77.2 2.7 5.9E-05 37.7 3.5 27 50-76 11-37 (231)
132 COG0237 CoaE Dephospho-CoA kin 77.2 2.3 4.9E-05 37.5 3.0 31 43-77 2-34 (201)
133 PRK10037 cell division protein 77.0 2.7 5.8E-05 38.2 3.6 32 44-75 2-36 (250)
134 TIGR00750 lao LAO/AO transport 76.5 4.6 9.9E-05 37.9 5.1 36 41-76 32-69 (300)
135 PF01583 APS_kinase: Adenylyls 76.4 4.2 9.1E-05 34.3 4.2 31 43-73 2-34 (156)
136 PRK09270 nucleoside triphospha 76.2 3 6.4E-05 37.4 3.6 42 28-70 19-62 (229)
137 PRK00090 bioD dithiobiotin syn 76.2 3.9 8.4E-05 36.3 4.3 29 46-74 2-33 (222)
138 PRK00698 tmk thymidylate kinas 76.1 4.7 0.0001 35.0 4.7 31 43-73 3-35 (205)
139 COG3640 CooC CO dehydrogenase 75.9 3.4 7.5E-05 37.2 3.7 28 45-72 2-32 (255)
140 PF13521 AAA_28: AAA domain; P 75.9 2.1 4.5E-05 36.0 2.4 19 46-64 2-22 (163)
141 TIGR00682 lpxK tetraacyldisacc 75.6 4.7 0.0001 38.1 4.8 35 42-76 27-65 (311)
142 cd02034 CooC The accessory pro 75.4 5.5 0.00012 31.7 4.5 27 50-76 8-34 (116)
143 cd02019 NK Nucleoside/nucleoti 75.4 5.2 0.00011 28.4 4.0 21 45-65 1-23 (69)
144 cd02037 MRP-like MRP (Multiple 75.3 3.5 7.5E-05 34.9 3.6 26 49-74 8-33 (169)
145 PRK08233 hypothetical protein; 75.2 2.8 6.2E-05 35.6 3.1 24 43-66 3-28 (182)
146 PF02492 cobW: CobW/HypB/UreG, 74.9 8.4 0.00018 33.0 6.0 33 44-77 1-35 (178)
147 PRK14489 putative bifunctional 74.7 4.8 0.0001 38.9 4.8 36 42-77 204-241 (366)
148 CHL00175 minD septum-site dete 74.7 5.3 0.00011 36.9 4.9 33 42-74 14-49 (281)
149 PRK13236 nitrogenase reductase 74.3 3.5 7.5E-05 38.6 3.6 34 42-75 5-40 (296)
150 cd03115 SRP The signal recogni 74.0 6.1 0.00013 33.4 4.8 32 45-76 2-35 (173)
151 KOG3308 Uncharacterized protei 73.9 2.9 6.2E-05 36.7 2.7 27 42-68 3-31 (225)
152 COG3954 PrkB Phosphoribulokina 73.8 2.3 5.1E-05 37.0 2.1 30 42-71 4-35 (289)
153 PF01121 CoaE: Dephospho-CoA k 73.7 2.9 6.2E-05 36.2 2.7 25 45-73 2-28 (180)
154 PRK13231 nitrogenase reductase 73.7 1.9 4.2E-05 39.4 1.8 28 45-73 4-33 (264)
155 COG0529 CysC Adenylylsulfate k 73.5 8.4 0.00018 33.2 5.3 33 41-73 21-55 (197)
156 PRK00771 signal recognition pa 73.2 6 0.00013 39.2 5.1 34 43-76 95-130 (437)
157 COG0489 Mrp ATPases involved i 73.1 6.2 0.00013 36.3 4.9 33 42-74 56-91 (265)
158 PRK01906 tetraacyldisaccharide 72.9 6 0.00013 37.8 4.9 34 42-75 55-92 (338)
159 PF13614 AAA_31: AAA domain; P 72.9 5.8 0.00013 32.7 4.4 31 44-74 1-34 (157)
160 TIGR01969 minD_arch cell divis 72.3 4.5 9.8E-05 36.3 3.8 30 45-74 2-34 (251)
161 PLN02924 thymidylate kinase 72.0 5.8 0.00012 35.5 4.3 33 41-73 14-48 (220)
162 PRK09841 cryptic autophosphory 71.8 7.5 0.00016 41.3 5.8 34 41-74 529-565 (726)
163 COG0125 Tmk Thymidylate kinase 71.4 7.6 0.00016 34.4 4.9 32 42-73 2-35 (208)
164 PLN03046 D-glycerate 3-kinase; 71.2 6.9 0.00015 38.6 4.8 34 42-75 211-246 (460)
165 COG3172 NadR Predicted ATPase/ 71.1 3.9 8.4E-05 34.7 2.7 25 43-67 8-34 (187)
166 PF02606 LpxK: Tetraacyldisacc 70.8 6.9 0.00015 37.2 4.8 34 42-75 34-71 (326)
167 PF09140 MipZ: ATPase MipZ; I 70.7 4.7 0.0001 36.7 3.4 31 45-75 2-35 (261)
168 PLN02796 D-glycerate 3-kinase 70.6 6.4 0.00014 37.6 4.5 33 42-74 99-133 (347)
169 PTZ00451 dephospho-CoA kinase; 70.4 4.3 9.3E-05 36.9 3.1 46 238-289 158-203 (244)
170 PLN02348 phosphoribulokinase 70.3 5.3 0.00012 38.8 3.9 28 42-69 48-77 (395)
171 COG1192 Soj ATPases involved i 69.8 6 0.00013 36.0 4.0 30 45-74 7-37 (259)
172 KOG3022 Predicted ATPase, nucl 69.8 4.7 0.0001 37.1 3.2 31 44-74 48-81 (300)
173 TIGR00379 cobB cobyrinic acid 69.6 6.2 0.00013 39.3 4.4 26 49-74 7-33 (449)
174 PF07755 DUF1611: Protein of u 69.6 7 0.00015 36.6 4.4 107 42-150 111-251 (301)
175 PF00448 SRP54: SRP54-type pro 68.7 7.8 0.00017 33.9 4.3 33 44-76 2-36 (196)
176 TIGR00313 cobQ cobyric acid sy 68.6 5.3 0.00011 40.1 3.6 27 48-74 3-32 (475)
177 PRK07429 phosphoribulokinase; 68.6 5.2 0.00011 38.1 3.4 28 42-69 7-36 (327)
178 PRK07933 thymidylate kinase; V 68.5 8.7 0.00019 34.1 4.7 29 45-73 2-32 (213)
179 PRK11889 flhF flagellar biosyn 68.5 8.8 0.00019 37.6 4.9 35 43-77 241-277 (436)
180 PRK14491 putative bifunctional 68.4 7.6 0.00016 40.2 4.8 35 42-76 9-45 (597)
181 PRK10867 signal recognition pa 68.0 8.7 0.00019 38.1 4.9 34 43-76 100-136 (433)
182 TIGR00235 udk uridine kinase. 67.1 6.1 0.00013 34.7 3.4 27 41-67 4-32 (207)
183 PRK10818 cell division inhibit 66.9 7 0.00015 35.7 3.9 31 44-74 3-36 (270)
184 cd02024 NRK1 Nicotinamide ribo 66.7 4.5 9.7E-05 35.2 2.4 21 45-65 1-23 (187)
185 PRK14733 coaE dephospho-CoA ki 66.4 5.8 0.00012 35.0 3.0 27 43-72 6-34 (204)
186 KOG1324 Dihydrofolate reductas 66.2 6.6 0.00014 33.6 3.1 52 250-302 61-119 (190)
187 PF06418 CTP_synth_N: CTP synt 66.1 8.3 0.00018 35.3 4.0 31 44-74 2-36 (276)
188 PRK13768 GTPase; Provisional 65.8 10 0.00022 34.6 4.6 30 45-74 4-35 (253)
189 cd03111 CpaE_like This protein 65.3 8.8 0.00019 29.8 3.6 47 47-109 6-53 (106)
190 cd02026 PRK Phosphoribulokinas 65.2 6 0.00013 36.6 3.0 25 45-69 1-27 (273)
191 PRK13973 thymidylate kinase; P 64.6 12 0.00026 33.1 4.8 32 43-74 3-36 (213)
192 PF01558 POR: Pyruvate ferredo 64.4 87 0.0019 26.4 11.5 143 52-251 3-152 (173)
193 TIGR00347 bioD dethiobiotin sy 64.0 8.7 0.00019 32.2 3.7 25 51-75 8-32 (166)
194 PF08433 KTI12: Chromatin asso 62.9 10 0.00023 35.0 4.2 31 44-74 2-34 (270)
195 COG4586 ABC-type uncharacteriz 62.9 12 0.00026 34.6 4.4 77 1-77 1-86 (325)
196 KOG3354 Gluconate kinase [Carb 61.8 6.4 0.00014 33.2 2.3 23 45-67 14-38 (191)
197 TIGR03499 FlhF flagellar biosy 61.8 14 0.0003 34.3 4.8 34 42-75 193-230 (282)
198 PF07931 CPT: Chloramphenicol 61.7 6.3 0.00014 33.9 2.3 24 44-67 2-27 (174)
199 cd02022 DPCK Dephospho-coenzym 61.7 8.3 0.00018 33.0 3.1 29 45-77 1-31 (179)
200 PRK12726 flagellar biosynthesi 61.2 15 0.00033 35.8 5.0 35 42-76 205-241 (407)
201 COG0504 PyrG CTP synthase (UTP 60.5 13 0.00029 36.9 4.5 31 44-74 2-36 (533)
202 TIGR02880 cbbX_cfxQ probable R 60.3 7.9 0.00017 36.0 2.9 26 45-71 63-88 (284)
203 PRK14730 coaE dephospho-CoA ki 60.2 9.5 0.00021 33.3 3.3 26 44-72 2-29 (195)
204 PRK11519 tyrosine kinase; Prov 60.2 14 0.0003 39.2 5.1 35 41-75 524-561 (719)
205 COG4088 Predicted nucleotide k 60.2 11 0.00024 33.4 3.6 29 44-72 2-32 (261)
206 cd03113 CTGs CTP synthetase (C 59.9 16 0.00034 33.2 4.6 31 44-74 1-35 (255)
207 PRK14731 coaE dephospho-CoA ki 59.8 11 0.00023 33.3 3.6 27 43-73 5-33 (208)
208 COG1663 LpxK Tetraacyldisaccha 59.7 10 0.00022 36.0 3.5 33 42-74 46-82 (336)
209 KOG0635 Adenosine 5'-phosphosu 59.2 18 0.0004 30.3 4.5 32 41-72 29-62 (207)
210 PRK08534 pyruvate ferredoxin o 58.9 1.2E+02 0.0025 26.0 12.7 94 45-164 3-98 (181)
211 PF13238 AAA_18: AAA domain; P 58.8 9.3 0.0002 30.0 2.8 20 46-65 1-22 (129)
212 PRK05541 adenylylsulfate kinas 58.8 17 0.00036 30.8 4.5 32 41-72 5-38 (176)
213 PRK04040 adenylate kinase; Pro 58.8 13 0.00027 32.4 3.8 30 43-73 2-33 (188)
214 PRK06547 hypothetical protein; 58.7 16 0.00035 31.2 4.4 26 41-66 13-40 (172)
215 PRK00081 coaE dephospho-CoA ki 58.6 9.8 0.00021 33.1 3.1 26 44-73 3-30 (194)
216 TIGR03815 CpaE_hom_Actino heli 58.5 12 0.00025 35.4 3.8 61 14-74 53-127 (322)
217 PRK14734 coaE dephospho-CoA ki 58.4 10 0.00022 33.3 3.1 25 44-72 2-28 (200)
218 COG1855 ATPase (PilT family) [ 58.3 8.9 0.00019 37.9 2.9 75 42-127 262-338 (604)
219 PLN02422 dephospho-CoA kinase 57.4 11 0.00023 34.1 3.1 30 44-77 2-33 (232)
220 cd00477 FTHFS Formyltetrahydro 57.1 17 0.00038 36.4 4.8 32 42-73 37-74 (524)
221 PF00142 Fer4_NifH: 4Fe-4S iro 56.9 13 0.00028 34.2 3.6 32 46-77 3-36 (273)
222 COG1797 CobB Cobyrinic acid a, 56.7 12 0.00027 36.7 3.6 28 45-72 2-32 (451)
223 COG1102 Cmk Cytidylate kinase 56.7 14 0.0003 31.5 3.4 30 45-77 2-33 (179)
224 COG0455 flhG Antiactivator of 56.6 20 0.00043 33.0 4.9 30 43-72 2-35 (262)
225 PF08353 DUF1727: Domain of un 56.3 36 0.00078 27.0 5.6 63 277-342 2-71 (113)
226 PRK14490 putative bifunctional 56.2 17 0.00037 35.2 4.6 33 42-75 4-38 (369)
227 cd02027 APSK Adenosine 5'-phos 56.2 15 0.00032 30.4 3.7 27 46-72 2-30 (149)
228 COG1428 Deoxynucleoside kinase 56.0 11 0.00025 33.3 3.0 24 43-66 4-29 (216)
229 TIGR00959 ffh signal recogniti 55.9 20 0.00042 35.6 5.0 33 43-75 99-134 (428)
230 PF02374 ArsA_ATPase: Anion-tr 55.9 18 0.00039 34.1 4.5 33 45-77 3-37 (305)
231 COG3265 GntK Gluconate kinase 55.8 5.9 0.00013 33.1 1.1 21 47-68 2-22 (161)
232 PRK06761 hypothetical protein; 55.5 11 0.00024 35.0 3.0 29 44-72 4-34 (282)
233 TIGR00152 dephospho-CoA kinase 55.1 9.8 0.00021 32.8 2.5 21 45-65 1-23 (188)
234 PRK14732 coaE dephospho-CoA ki 55.0 9.6 0.00021 33.4 2.4 24 45-72 1-26 (196)
235 TIGR01360 aden_kin_iso1 adenyl 54.6 19 0.0004 30.6 4.2 32 42-76 2-35 (188)
236 PRK13886 conjugal transfer pro 54.4 15 0.00033 33.3 3.7 27 48-74 10-36 (241)
237 PRK06762 hypothetical protein; 53.9 15 0.00033 30.7 3.4 22 44-65 3-26 (166)
238 PRK13896 cobyrinic acid a,c-di 53.4 20 0.00043 35.6 4.6 30 45-74 3-35 (433)
239 PRK01184 hypothetical protein; 53.1 19 0.00041 30.7 4.0 26 44-73 2-29 (184)
240 TIGR03574 selen_PSTK L-seryl-t 53.1 19 0.00042 32.5 4.2 28 46-73 2-31 (249)
241 PF05872 DUF853: Bacterial pro 53.0 11 0.00023 37.4 2.6 37 37-74 16-52 (502)
242 PRK13506 formate--tetrahydrofo 52.3 18 0.0004 36.7 4.1 31 42-72 53-89 (578)
243 cd02038 FleN-like FleN is a me 52.2 20 0.00043 29.2 3.7 50 46-109 5-55 (139)
244 PF01935 DUF87: Domain of unkn 52.2 16 0.00036 32.3 3.6 44 25-72 11-55 (229)
245 COG4555 NatA ABC-type Na+ tran 52.0 14 0.00031 32.7 2.9 27 41-67 26-54 (245)
246 PRK08099 bifunctional DNA-bind 51.9 13 0.00027 36.5 2.9 24 42-65 218-243 (399)
247 PLN02974 adenosylmethionine-8- 51.5 21 0.00046 38.4 4.7 32 42-73 26-60 (817)
248 PRK06274 indolepyruvate oxidor 50.7 1.6E+02 0.0036 25.3 13.7 90 46-164 5-97 (197)
249 PRK03333 coaE dephospho-CoA ki 50.3 15 0.00032 36.0 3.1 20 44-63 2-23 (395)
250 PRK05380 pyrG CTP synthetase; 50.3 23 0.00051 35.9 4.5 32 43-74 2-37 (533)
251 PRK00300 gmk guanylate kinase; 50.3 16 0.00035 31.7 3.1 25 42-66 4-30 (205)
252 PRK13505 formate--tetrahydrofo 49.5 29 0.00062 35.3 5.0 32 42-73 54-91 (557)
253 cd00227 CPT Chloramphenicol (C 49.2 21 0.00046 30.3 3.6 25 43-67 2-28 (175)
254 TIGR00337 PyrG CTP synthase. C 48.7 26 0.00057 35.5 4.6 31 44-74 2-36 (525)
255 COG2805 PilT Tfp pilus assembl 48.7 21 0.00045 33.6 3.5 27 42-68 124-153 (353)
256 PRK00131 aroK shikimate kinase 48.6 21 0.00046 29.7 3.5 25 42-66 3-29 (175)
257 PRK08537 2-oxoglutarate ferred 48.2 1.7E+02 0.0037 24.8 12.5 150 46-252 5-158 (177)
258 cd02035 ArsA ArsA ATPase funct 47.3 22 0.00047 31.5 3.5 27 49-75 7-33 (217)
259 COG1348 NifH Nitrogenase subun 47.3 20 0.00042 32.4 3.1 33 45-77 3-37 (278)
260 TIGR02322 phosphon_PhnN phosph 46.8 21 0.00044 30.3 3.2 24 44-67 2-27 (179)
261 PF13604 AAA_30: AAA domain; P 46.8 34 0.00074 29.8 4.6 35 42-76 17-53 (196)
262 PF01268 FTHFS: Formate--tetra 46.7 26 0.00057 35.6 4.2 33 41-73 52-90 (557)
263 PRK13507 formate--tetrahydrofo 46.5 25 0.00054 35.7 4.0 32 42-73 62-99 (587)
264 PRK12724 flagellar biosynthesi 46.5 33 0.00072 33.9 4.8 34 43-76 223-259 (432)
265 KOG0780 Signal recognition par 46.5 25 0.00054 34.2 3.8 34 42-75 100-135 (483)
266 PRK06217 hypothetical protein; 46.0 21 0.00045 30.5 3.1 21 45-65 3-25 (183)
267 PLN02327 CTP synthase 45.8 28 0.00061 35.5 4.3 31 44-74 2-36 (557)
268 COG2019 AdkA Archaeal adenylat 45.6 26 0.00056 30.1 3.4 23 43-65 4-28 (189)
269 TIGR01005 eps_transp_fam exopo 45.6 29 0.00063 37.0 4.7 35 41-75 544-581 (754)
270 cd03243 ABC_MutS_homologs The 45.3 23 0.0005 30.8 3.3 22 43-64 29-52 (202)
271 cd00550 ArsA_ATPase Oxyanion-t 45.1 33 0.00071 31.2 4.4 27 50-76 9-35 (254)
272 cd03223 ABCD_peroxisomal_ALDP 44.2 16 0.00035 30.7 2.1 25 42-66 26-52 (166)
273 PF00580 UvrD-helicase: UvrD/R 44.0 24 0.00051 32.5 3.4 28 42-70 15-43 (315)
274 PRK13975 thymidylate kinase; P 43.7 25 0.00053 30.2 3.2 24 44-67 3-28 (196)
275 TIGR02782 TrbB_P P-type conjug 43.7 51 0.0011 30.9 5.5 34 33-67 123-158 (299)
276 PF00005 ABC_tran: ABC transpo 43.6 22 0.00047 28.5 2.7 26 42-67 10-37 (137)
277 TIGR01033 DNA-binding regulato 43.4 67 0.0015 29.1 6.0 55 233-289 54-115 (238)
278 COG0283 Cmk Cytidylate kinase 43.1 24 0.00053 31.4 3.0 30 43-72 4-35 (222)
279 PRK05632 phosphate acetyltrans 43.0 32 0.00069 36.3 4.4 85 45-129 4-116 (684)
280 PRK11537 putative GTP-binding 42.6 49 0.0011 31.3 5.2 31 42-75 3-36 (318)
281 cd03229 ABC_Class3 This class 42.4 21 0.00046 30.3 2.6 26 42-67 25-52 (178)
282 PLN02759 Formate--tetrahydrofo 42.4 37 0.00081 34.8 4.5 31 42-72 68-105 (637)
283 COG0466 Lon ATP-dependent Lon 42.1 26 0.00056 36.8 3.4 64 11-77 321-386 (782)
284 cd03255 ABC_MJ0796_Lo1CDE_FtsE 42.1 23 0.00049 31.1 2.8 25 42-66 29-55 (218)
285 COG1131 CcmA ABC-type multidru 41.7 21 0.00046 33.3 2.6 39 26-68 18-58 (293)
286 PRK06278 cobyrinic acid a,c-di 41.7 29 0.00064 34.8 3.7 27 42-68 237-266 (476)
287 COG0003 ArsA Predicted ATPase 41.6 44 0.00095 31.8 4.7 33 44-76 3-37 (322)
288 PF12846 AAA_10: AAA-like doma 41.5 28 0.00061 31.8 3.4 28 45-73 6-33 (304)
289 cd01129 PulE-GspE PulE/GspE Th 41.5 50 0.0011 30.3 5.0 20 42-61 79-100 (264)
290 PRK05703 flhF flagellar biosyn 41.5 43 0.00092 33.2 4.8 34 43-76 221-258 (424)
291 PRK04182 cytidylate kinase; Pr 41.1 26 0.00057 29.4 2.9 21 45-65 2-24 (180)
292 TIGR00150 HI0065_YjeE ATPase, 40.9 48 0.0011 27.1 4.3 26 41-66 20-47 (133)
293 PLN02318 phosphoribulokinase/u 40.8 29 0.00063 35.9 3.5 25 42-66 64-90 (656)
294 cd01131 PilT Pilus retraction 40.7 41 0.0009 29.2 4.2 22 45-66 3-26 (198)
295 PRK13537 nodulation ABC transp 40.6 21 0.00046 33.5 2.5 26 42-67 32-59 (306)
296 KOG2004 Mitochondrial ATP-depe 40.4 31 0.00068 36.2 3.7 36 42-77 437-474 (906)
297 PRK06995 flhF flagellar biosyn 40.3 47 0.001 33.4 4.9 32 43-74 256-291 (484)
298 PF02223 Thymidylate_kin: Thym 40.0 26 0.00056 29.9 2.8 21 52-72 7-27 (186)
299 cd01130 VirB11-like_ATPase Typ 39.9 38 0.00082 29.1 3.8 27 41-67 23-51 (186)
300 KOG3062 RNA polymerase II elon 39.9 38 0.00083 30.5 3.7 29 43-71 1-31 (281)
301 PRK12723 flagellar biosynthesi 39.5 48 0.001 32.4 4.7 34 43-76 174-213 (388)
302 PRK13477 bifunctional pantoate 39.5 36 0.00077 34.6 4.0 24 42-65 283-308 (512)
303 cd03226 ABC_cobalt_CbiO_domain 39.0 26 0.00056 30.5 2.6 25 42-66 25-51 (205)
304 COG1245 Predicted ATPase, RNas 38.9 30 0.00064 34.5 3.1 26 41-66 98-125 (591)
305 cd03259 ABC_Carb_Solutes_like 38.4 27 0.0006 30.5 2.7 25 42-66 25-51 (213)
306 PRK07261 topology modulation p 38.1 35 0.00076 28.9 3.2 21 45-65 2-24 (171)
307 cd03294 ABC_Pro_Gly_Bertaine T 37.8 26 0.00057 32.1 2.6 25 42-66 49-75 (269)
308 TIGR01470 cysG_Nterm siroheme 37.7 18 0.00039 31.9 1.4 64 4-68 72-143 (205)
309 PRK06731 flhF flagellar biosyn 37.6 61 0.0013 29.9 4.9 36 42-77 74-111 (270)
310 PRK13976 thymidylate kinase; P 37.4 57 0.0012 28.8 4.6 25 45-69 2-29 (209)
311 TIGR02173 cyt_kin_arch cytidyl 37.3 33 0.00072 28.5 3.0 21 45-65 2-24 (171)
312 PRK08118 topology modulation p 37.2 40 0.00086 28.5 3.4 23 44-66 2-26 (167)
313 KOG2749 mRNA cleavage and poly 37.1 45 0.00097 32.1 3.9 30 43-72 103-134 (415)
314 PRK13974 thymidylate kinase; P 37.0 46 0.001 29.3 3.9 28 43-70 3-32 (212)
315 PRK14029 pyruvate/ketoisovaler 37.0 2.7E+02 0.0058 23.8 12.6 93 46-164 4-98 (185)
316 PHA02575 1 deoxynucleoside mon 36.5 34 0.00074 30.7 2.9 33 45-83 2-36 (227)
317 COG4133 CcmA ABC-type transpor 36.5 36 0.00078 29.8 3.0 28 42-69 27-56 (209)
318 PRK13540 cytochrome c biogenes 36.4 32 0.00068 29.8 2.8 25 42-66 26-52 (200)
319 cd03222 ABC_RNaseL_inhibitor T 36.4 33 0.00072 29.4 2.8 26 42-67 24-51 (177)
320 PRK13695 putative NTPase; Prov 36.3 48 0.001 27.9 3.8 28 45-72 2-31 (174)
321 PRK06851 hypothetical protein; 36.0 92 0.002 30.2 6.0 32 42-73 29-62 (367)
322 PRK04296 thymidine kinase; Pro 35.9 59 0.0013 28.0 4.4 31 44-74 3-35 (190)
323 PRK10744 pstB phosphate transp 35.8 31 0.00068 31.3 2.7 25 42-66 38-64 (260)
324 PF02562 PhoH: PhoH-like prote 35.6 41 0.00088 29.7 3.3 37 267-303 120-156 (205)
325 PRK15177 Vi polysaccharide exp 35.3 27 0.00058 30.8 2.1 25 42-66 12-38 (213)
326 TIGR01613 primase_Cterm phage/ 35.3 26 0.00056 32.8 2.1 21 49-69 84-104 (304)
327 PRK00023 cmk cytidylate kinase 35.2 45 0.00098 29.7 3.6 24 43-66 4-29 (225)
328 TIGR01313 therm_gnt_kin carboh 35.2 28 0.00061 28.9 2.2 19 47-65 2-22 (163)
329 TIGR00017 cmk cytidylate kinas 34.8 43 0.00092 29.8 3.3 23 44-66 3-27 (217)
330 PTZ00386 formyl tetrahydrofola 34.5 46 0.00099 34.1 3.7 31 42-72 67-104 (625)
331 KOG0447 Dynamin-like GTP bindi 34.4 19 0.0004 36.5 1.0 24 41-64 306-331 (980)
332 PF08303 tRNA_lig_kinase: tRNA 34.3 24 0.00051 30.1 1.5 19 52-70 10-28 (168)
333 PRK11248 tauB taurine transpor 34.3 34 0.00074 31.0 2.7 25 42-66 26-52 (255)
334 PRK08338 2-oxoglutarate ferred 34.2 2.9E+02 0.0062 23.3 13.9 143 46-252 3-148 (170)
335 PRK13947 shikimate kinase; Pro 34.2 46 0.001 27.7 3.4 22 45-66 3-26 (171)
336 TIGR01420 pilT_fam pilus retra 34.0 57 0.0012 31.2 4.3 25 42-66 121-147 (343)
337 TIGR03608 L_ocin_972_ABC putat 33.9 35 0.00076 29.6 2.6 25 42-66 23-49 (206)
338 PRK12727 flagellar biosynthesi 33.7 71 0.0015 32.6 5.0 34 42-75 349-386 (559)
339 COG2759 MIS1 Formyltetrahydrof 33.6 37 0.0008 33.6 2.8 31 42-72 51-87 (554)
340 PRK13652 cbiO cobalt transport 33.6 34 0.00074 31.5 2.6 25 42-66 29-55 (277)
341 cd03263 ABC_subfamily_A The AB 33.6 36 0.00079 29.8 2.7 25 42-66 27-53 (220)
342 cd03231 ABC_CcmA_heme_exporter 33.5 35 0.00076 29.6 2.6 25 42-66 25-51 (201)
343 cd03232 ABC_PDR_domain2 The pl 33.5 42 0.0009 28.9 3.0 23 42-64 32-56 (192)
344 PRK09825 idnK D-gluconate kina 33.5 49 0.0011 28.3 3.4 24 43-66 3-28 (176)
345 PRK10247 putative ABC transpor 33.4 45 0.00097 29.5 3.3 25 42-66 32-58 (225)
346 PRK09493 glnQ glutamine ABC tr 33.3 35 0.00076 30.5 2.6 25 42-66 26-52 (240)
347 PRK13650 cbiO cobalt transport 33.0 37 0.0008 31.3 2.7 26 42-67 32-59 (279)
348 PRK08356 hypothetical protein; 32.8 66 0.0014 27.7 4.2 30 43-76 5-36 (195)
349 PRK10908 cell division protein 32.3 47 0.001 29.2 3.3 25 42-66 27-53 (222)
350 PRK14235 phosphate transporter 32.0 44 0.00096 30.5 3.1 25 42-66 44-70 (267)
351 cd03278 ABC_SMC_barmotin Barmo 32.0 46 0.001 28.9 3.1 23 45-67 24-48 (197)
352 cd00267 ABC_ATPase ABC (ATP-bi 31.9 42 0.0009 27.7 2.7 26 42-67 24-51 (157)
353 cd03265 ABC_DrrA DrrA is the A 31.7 40 0.00086 29.7 2.6 25 42-66 25-51 (220)
354 cd03273 ABC_SMC2_euk Eukaryoti 31.6 55 0.0012 29.5 3.6 26 42-67 24-51 (251)
355 PRK13946 shikimate kinase; Pro 31.4 52 0.0011 28.1 3.3 23 43-65 10-34 (184)
356 TIGR02770 nickel_nikD nickel i 31.3 33 0.00072 30.4 2.1 26 42-67 11-38 (230)
357 PF13555 AAA_29: P-loop contai 31.2 74 0.0016 22.2 3.4 26 44-69 24-51 (62)
358 cd03221 ABCF_EF-3 ABCF_EF-3 E 31.1 51 0.0011 26.9 3.0 25 42-66 25-51 (144)
359 cd03269 ABC_putative_ATPase Th 31.1 39 0.00085 29.4 2.5 25 42-66 25-51 (210)
360 KOG3220 Similar to bacterial d 31.0 56 0.0012 28.9 3.3 42 239-288 148-189 (225)
361 PF03266 NTPase_1: NTPase; In 30.8 71 0.0015 27.1 3.9 27 46-72 2-30 (168)
362 TIGR00073 hypB hydrogenase acc 30.8 1.5E+02 0.0032 25.8 6.2 20 41-60 20-41 (207)
363 cd03237 ABC_RNaseL_inhibitor_d 30.8 33 0.00073 31.0 2.0 25 42-66 24-50 (246)
364 cd03253 ABCC_ATM1_transporter 30.7 50 0.0011 29.3 3.2 25 42-66 26-52 (236)
365 PF01709 Transcrip_reg: Transc 30.6 95 0.0021 28.0 4.9 54 233-288 50-110 (234)
366 COG5271 MDN1 AAA ATPase contai 30.6 44 0.00095 39.2 3.1 52 29-82 454-522 (4600)
367 PF06048 DUF927: Domain of unk 30.5 74 0.0016 29.5 4.3 27 41-67 191-219 (286)
368 TIGR02533 type_II_gspE general 30.4 75 0.0016 32.1 4.6 18 42-59 241-260 (486)
369 TIGR00960 3a0501s02 Type II (G 30.4 42 0.00091 29.4 2.6 25 42-66 28-54 (216)
370 cd02020 CMPK Cytidine monophos 30.4 48 0.001 26.6 2.8 21 45-65 1-23 (147)
371 PRK14709 hypothetical protein; 30.3 35 0.00076 34.2 2.2 20 49-68 213-232 (469)
372 TIGR03864 PQQ_ABC_ATP ABC tran 30.3 43 0.00092 29.9 2.6 25 42-66 26-52 (236)
373 cd03274 ABC_SMC4_euk Eukaryoti 30.3 56 0.0012 28.8 3.3 22 43-64 25-48 (212)
374 PF13476 AAA_23: AAA domain; P 30.2 52 0.0011 27.9 3.1 27 42-68 18-46 (202)
375 smart00763 AAA_PrkA PrkA AAA d 30.2 73 0.0016 30.8 4.3 27 42-68 77-105 (361)
376 TIGR02315 ABC_phnC phosphonate 30.2 47 0.001 29.6 2.9 25 42-66 27-53 (243)
377 cd03262 ABC_HisP_GlnQ_permease 30.2 46 0.00099 29.0 2.8 25 42-66 25-51 (213)
378 PRK03731 aroL shikimate kinase 30.1 58 0.0013 27.2 3.3 22 44-65 3-26 (171)
379 cd03213 ABCG_EPDR ABCG transpo 30.1 38 0.00081 29.3 2.2 24 42-65 34-59 (194)
380 KOG1534 Putative transcription 30.1 55 0.0012 29.2 3.1 29 45-74 8-36 (273)
381 PRK14251 phosphate ABC transpo 30.0 44 0.00095 30.1 2.7 25 42-66 29-55 (251)
382 COG4152 ABC-type uncharacteriz 30.0 33 0.00073 31.3 1.8 39 42-84 27-68 (300)
383 cd01673 dNK Deoxyribonucleosid 30.0 43 0.00092 28.7 2.5 21 45-65 1-23 (193)
384 smart00053 DYNc Dynamin, GTPas 30.0 50 0.0011 29.9 3.0 23 42-64 25-49 (240)
385 PRK00110 hypothetical protein; 29.9 1.5E+02 0.0033 26.9 6.1 53 233-287 54-113 (245)
386 cd00009 AAA The AAA+ (ATPases 29.7 1E+02 0.0023 23.9 4.7 31 42-72 18-50 (151)
387 cd03300 ABC_PotA_N PotA is an 29.7 47 0.001 29.5 2.8 26 42-67 25-52 (232)
388 PRK08154 anaerobic benzoate ca 29.7 39 0.00085 31.7 2.4 25 41-65 131-157 (309)
389 PRK11264 putative amino-acid A 29.7 46 0.00099 29.9 2.7 25 42-66 28-54 (250)
390 TIGR01288 nodI ATP-binding ABC 29.6 41 0.0009 31.4 2.5 25 42-66 29-55 (303)
391 cd03295 ABC_OpuCA_Osmoprotecti 29.6 49 0.0011 29.6 2.9 25 42-66 26-52 (242)
392 PRK14274 phosphate ABC transpo 29.4 59 0.0013 29.4 3.4 25 42-66 37-63 (259)
393 TIGR02175 PorC_KorC 2-oxoacid: 29.3 3.5E+02 0.0076 22.9 9.2 93 46-164 4-98 (177)
394 cd03216 ABC_Carb_Monos_I This 29.3 45 0.00097 27.9 2.4 26 42-67 25-52 (163)
395 cd03369 ABCC_NFT1 Domain 2 of 29.2 60 0.0013 28.1 3.4 25 42-66 33-59 (207)
396 PRK14250 phosphate ABC transpo 29.2 46 0.001 29.8 2.7 25 42-66 28-54 (241)
397 TIGR03263 guanyl_kin guanylate 29.1 55 0.0012 27.5 3.0 22 44-65 2-25 (180)
398 cd03247 ABCC_cytochrome_bd The 29.1 56 0.0012 27.7 3.0 26 42-67 27-54 (178)
399 COG3910 Predicted ATPase [Gene 29.1 38 0.00082 29.7 1.9 47 14-63 11-59 (233)
400 cd02021 GntK Gluconate kinase 29.0 45 0.00097 27.2 2.3 20 46-65 2-23 (150)
401 PRK14722 flhF flagellar biosyn 28.8 84 0.0018 30.5 4.5 34 42-75 136-173 (374)
402 cd03214 ABC_Iron-Siderophores_ 28.7 52 0.0011 27.9 2.8 26 42-67 24-51 (180)
403 cd03272 ABC_SMC3_euk Eukaryoti 28.7 62 0.0013 28.8 3.4 24 43-66 23-48 (243)
404 PRK11153 metN DL-methionine tr 28.6 42 0.0009 32.1 2.4 26 42-67 30-57 (343)
405 cd03292 ABC_FtsE_transporter F 28.6 46 0.00099 29.0 2.5 25 42-66 26-52 (214)
406 PRK12338 hypothetical protein; 28.3 58 0.0013 30.9 3.2 25 42-66 3-29 (319)
407 cd03228 ABCC_MRP_Like The MRP 28.2 60 0.0013 27.3 3.1 26 42-67 27-54 (171)
408 cd03244 ABCC_MRP_domain2 Domai 28.1 59 0.0013 28.5 3.1 25 42-66 29-55 (221)
409 cd03266 ABC_NatA_sodium_export 28.0 55 0.0012 28.6 2.9 25 42-66 30-56 (218)
410 TIGR02769 nickel_nikE nickel i 27.8 49 0.0011 30.1 2.6 36 27-66 25-62 (265)
411 PRK11701 phnK phosphonate C-P 27.7 51 0.0011 29.8 2.7 26 42-67 31-58 (258)
412 cd03219 ABC_Mj1267_LivG_branch 27.6 47 0.001 29.5 2.4 25 42-66 25-51 (236)
413 PRK03839 putative kinase; Prov 27.5 67 0.0014 27.2 3.3 21 45-65 2-24 (180)
414 PF13173 AAA_14: AAA domain 27.4 74 0.0016 25.2 3.3 21 43-63 2-24 (128)
415 PRK12378 hypothetical protein; 27.2 2.5E+02 0.0053 25.4 6.9 53 233-287 52-110 (235)
416 cd03296 ABC_CysA_sulfate_impor 27.0 52 0.0011 29.4 2.6 25 42-66 27-53 (239)
417 TIGR01526 nadR_NMN_Atrans nico 26.9 66 0.0014 30.5 3.3 23 43-65 162-186 (325)
418 PRK14530 adenylate kinase; Pro 26.8 70 0.0015 28.1 3.3 22 44-65 4-27 (215)
419 PRK10787 DNA-binding ATP-depen 26.7 71 0.0015 34.3 3.9 31 42-72 348-380 (784)
420 smart00382 AAA ATPases associa 26.7 60 0.0013 25.0 2.7 26 44-69 3-30 (148)
421 PRK14723 flhF flagellar biosyn 26.7 92 0.002 33.3 4.6 33 43-75 185-221 (767)
422 cd03282 ABC_MSH4_euk MutS4 hom 26.6 83 0.0018 27.6 3.7 28 42-69 28-59 (204)
423 PRK10536 hypothetical protein; 26.4 1.2E+02 0.0025 28.0 4.7 37 267-303 177-213 (262)
424 COG1341 Predicted GTPase or GT 26.4 1.1E+02 0.0024 29.8 4.8 33 42-74 72-106 (398)
425 PRK14272 phosphate ABC transpo 26.4 53 0.0011 29.5 2.5 25 42-66 29-55 (252)
426 PRK13833 conjugal transfer pro 26.4 1E+02 0.0022 29.3 4.5 32 33-65 135-168 (323)
427 PRK00625 shikimate kinase; Pro 26.0 69 0.0015 27.3 3.0 21 46-66 3-25 (173)
428 PRK15455 PrkA family serine pr 26.0 1.1E+02 0.0024 31.7 4.9 32 37-68 97-130 (644)
429 PRK10463 hydrogenase nickel in 25.9 1.4E+02 0.0031 27.9 5.2 28 41-68 102-131 (290)
430 cd03285 ABC_MSH2_euk MutS2 hom 25.7 81 0.0018 28.0 3.6 28 42-69 29-60 (222)
431 PRK11022 dppD dipeptide transp 25.7 51 0.0011 31.3 2.4 36 27-66 21-58 (326)
432 PRK13949 shikimate kinase; Pro 25.7 76 0.0016 26.8 3.2 22 45-66 3-26 (169)
433 PF00004 AAA: ATPase family as 25.6 64 0.0014 25.1 2.7 21 46-66 1-23 (132)
434 cd03240 ABC_Rad50 The catalyti 25.6 75 0.0016 27.8 3.3 25 43-67 22-48 (204)
435 PRK14275 phosphate ABC transpo 25.5 60 0.0013 30.1 2.7 25 42-66 64-90 (286)
436 cd01120 RecA-like_NTPases RecA 25.5 1E+02 0.0022 24.8 3.9 29 46-74 2-32 (165)
437 cd03279 ABC_sbcCD SbcCD and ot 25.5 40 0.00086 29.6 1.5 23 43-65 28-52 (213)
438 PRK14267 phosphate ABC transpo 25.4 52 0.0011 29.6 2.3 25 42-66 29-55 (253)
439 TIGR03005 ectoine_ehuA ectoine 25.4 56 0.0012 29.4 2.5 25 42-66 25-51 (252)
440 PRK05416 glmZ(sRNA)-inactivati 25.4 69 0.0015 29.9 3.1 21 42-62 5-27 (288)
441 PRK05537 bifunctional sulfate 25.4 79 0.0017 32.6 3.8 55 16-70 356-422 (568)
442 PRK13649 cbiO cobalt transport 25.3 53 0.0011 30.2 2.4 25 42-66 32-58 (280)
443 PRK13948 shikimate kinase; Pro 25.3 84 0.0018 27.1 3.5 25 42-66 9-35 (182)
444 PF00350 Dynamin_N: Dynamin fa 25.2 52 0.0011 27.2 2.1 16 46-61 1-18 (168)
445 PF00009 GTP_EFTU: Elongation 25.2 59 0.0013 27.7 2.5 24 42-65 2-27 (188)
446 TIGR03707 PPK2_P_aer polyphosp 24.9 88 0.0019 28.2 3.6 64 42-109 30-99 (230)
447 PRK14528 adenylate kinase; Pro 24.5 1.2E+02 0.0026 26.0 4.3 22 44-65 2-25 (186)
448 KOG1533 Predicted GTPase [Gene 24.4 80 0.0017 28.7 3.1 24 51-74 12-35 (290)
449 PF12128 DUF3584: Protein of u 24.2 86 0.0019 35.5 4.1 17 46-62 20-38 (1201)
450 PRK13644 cbiO cobalt transport 24.1 65 0.0014 29.6 2.7 25 42-66 27-53 (274)
451 PRK10419 nikE nickel transport 24.1 66 0.0014 29.4 2.8 25 42-66 37-63 (268)
452 PRK10619 histidine/lysine/argi 24.0 64 0.0014 29.1 2.6 25 42-66 30-56 (257)
453 PF05729 NACHT: NACHT domain 24.0 1.1E+02 0.0023 24.9 3.8 25 45-69 2-28 (166)
454 PRK13764 ATPase; Provisional 23.9 1.4E+02 0.0029 31.1 5.1 30 43-72 257-288 (602)
455 TIGR03411 urea_trans_UrtD urea 23.9 69 0.0015 28.6 2.8 25 42-66 27-53 (242)
456 PRK10436 hypothetical protein; 23.8 1.1E+02 0.0024 30.6 4.5 23 42-64 217-242 (462)
457 PRK10078 ribose 1,5-bisphospho 23.4 66 0.0014 27.5 2.5 23 44-66 3-27 (186)
458 cd03283 ABC_MutS-like MutS-lik 23.3 1.2E+02 0.0025 26.5 4.0 28 43-70 25-56 (199)
459 TIGR02524 dot_icm_DotB Dot/Icm 23.2 95 0.0021 30.0 3.7 25 42-66 133-159 (358)
460 cd00464 SK Shikimate kinase (S 23.1 87 0.0019 25.4 3.1 20 46-65 2-23 (154)
461 KOG0991 Replication factor C, 22.9 1E+02 0.0022 28.1 3.5 39 28-68 35-75 (333)
462 PRK13894 conjugal transfer ATP 22.9 1.2E+02 0.0026 28.7 4.3 30 33-63 139-170 (319)
463 cd04163 Era Era subfamily. Er 22.9 80 0.0017 25.3 2.8 20 43-62 3-24 (168)
464 COG0523 Putative GTPases (G3E 22.7 1.6E+02 0.0035 27.9 5.1 115 43-166 1-157 (323)
465 TIGR01359 UMP_CMP_kin_fam UMP- 22.4 75 0.0016 26.8 2.6 21 45-65 1-23 (183)
466 PRK13634 cbiO cobalt transport 22.0 75 0.0016 29.5 2.7 25 42-66 32-58 (290)
467 cd03227 ABC_Class2 ABC-type Cl 22.0 1.1E+02 0.0023 25.5 3.5 25 44-68 22-48 (162)
468 PRK05986 cob(I)alamin adenolsy 21.9 88 0.0019 27.3 2.9 29 44-72 23-53 (191)
469 TIGR02788 VirB11 P-type DNA tr 21.9 92 0.002 29.2 3.3 25 41-65 142-168 (308)
470 PRK13641 cbiO cobalt transport 21.9 70 0.0015 29.6 2.5 26 42-67 32-59 (287)
471 PRK02496 adk adenylate kinase; 21.8 1E+02 0.0023 26.0 3.4 22 45-66 3-26 (184)
472 TIGR03709 PPK2_rel_1 polyphosp 21.8 1.1E+02 0.0024 28.1 3.7 33 43-75 56-90 (264)
473 PRK07078 hypothetical protein; 21.8 58 0.0013 34.8 2.1 20 49-68 499-518 (759)
474 PRK05973 replicative DNA helic 21.8 2.6E+02 0.0056 25.3 6.0 34 42-76 63-99 (237)
475 KOG0448 Mitofusin 1 GTPase, in 21.8 1.1E+02 0.0023 32.1 3.8 19 41-59 107-127 (749)
476 TIGR01166 cbiO cobalt transpor 21.7 77 0.0017 27.0 2.6 25 42-66 17-43 (190)
477 TIGR00708 cobA cob(I)alamin ad 21.7 92 0.002 26.7 2.9 28 45-72 7-36 (173)
478 PRK15112 antimicrobial peptide 21.7 77 0.0017 28.9 2.7 25 42-66 38-64 (267)
479 PRK05057 aroK shikimate kinase 21.7 1E+02 0.0022 26.0 3.3 24 43-66 4-29 (172)
480 PF03029 ATP_bind_1: Conserved 21.6 85 0.0018 28.3 2.9 22 52-73 7-28 (238)
481 PRK14527 adenylate kinase; Pro 21.5 1.2E+02 0.0025 26.0 3.7 25 42-66 5-31 (191)
482 cd03110 Fer4_NifH_child This p 21.5 71 0.0015 26.9 2.3 17 49-65 8-24 (179)
483 PF02463 SMC_N: RecF/RecN/SMC 21.5 84 0.0018 27.5 2.8 26 42-67 23-50 (220)
484 PRK11231 fecE iron-dicitrate t 21.4 79 0.0017 28.5 2.7 25 42-66 27-53 (255)
485 COG1832 Predicted CoA-binding 21.4 96 0.0021 25.5 2.8 32 42-73 15-47 (140)
486 cd02030 NDUO42 NADH:Ubiquinone 21.4 84 0.0018 27.7 2.8 22 46-67 2-25 (219)
487 PRK09984 phosphonate/organopho 21.3 72 0.0016 28.9 2.4 25 42-66 29-55 (262)
488 PF14516 AAA_35: AAA-like doma 21.3 2E+02 0.0044 27.2 5.5 33 41-73 29-63 (331)
489 COG4167 SapF ABC-type antimicr 21.2 82 0.0018 27.6 2.5 27 42-68 38-66 (267)
490 PRK09968 serine/threonine-spec 21.1 3E+02 0.0065 24.3 6.3 70 258-333 5-78 (218)
491 PF01202 SKI: Shikimate kinase 21.0 65 0.0014 26.7 1.9 17 52-68 3-19 (158)
492 PRK09580 sufC cysteine desulfu 20.9 89 0.0019 27.9 2.9 24 42-65 26-51 (248)
493 cd04236 AAK_NAGS-Urea AAK_NAGS 20.8 1.9E+02 0.0042 26.7 5.1 64 234-302 8-77 (271)
494 PRK06835 DNA replication prote 20.7 1E+02 0.0022 29.3 3.4 31 44-74 184-216 (329)
495 TIGR01186 proV glycine betaine 20.7 69 0.0015 30.9 2.2 26 42-67 18-45 (363)
496 KOG0460 Mitochondrial translat 20.7 69 0.0015 30.7 2.1 20 51-70 64-83 (449)
497 KOG0330 ATP-dependent RNA heli 20.5 5E+02 0.011 25.6 7.7 122 15-142 69-205 (476)
498 PF07693 KAP_NTPase: KAP famil 20.4 1.2E+02 0.0026 28.2 3.8 27 42-68 19-47 (325)
499 COG1134 TagH ABC-type polysacc 20.3 1E+02 0.0022 28.0 3.0 26 42-67 52-79 (249)
500 TIGR02881 spore_V_K stage V sp 20.2 1.4E+02 0.003 27.2 4.0 27 43-69 42-70 (261)
No 1
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.9e-61 Score=463.62 Aligned_cols=315 Identities=26% Similarity=0.412 Sum_probs=267.7
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~ 83 (363)
++|.||.+|++||.+++|+..|+++++++|+++|.. ...|+|+|||||||||||+||++||++.|.++.++||||.|..
T Consensus 72 ~vV~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l 150 (448)
T COG0771 72 LVVKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPAL 150 (448)
T ss_pred EEEECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHH
Confidence 579999999999999999999999999999999986 3567999999999999999999999999999999999999998
Q ss_pred hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017969 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~ 163 (363)
..... ..+.|++|+|+||+||+.+.. ++|++++||||++||||||+|+|+|+.+|.+|++++.+ ++|+|.
T Consensus 151 ~~~~~-------~~~~d~~VlElSSfQL~~~~~-~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vin~ 220 (448)
T COG0771 151 ELLEQ-------AEPADVYVLELSSFQLETTSS-LRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVINA 220 (448)
T ss_pred Hhhcc-------cCCCCEEEEEccccccccCcc-CCccEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCcc--EEEEeC
Confidence 76542 456789999999999999887 99999999999999999999999999999999998665 999999
Q ss_pred CChhHHHHHhc-CCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCH
Q 017969 164 GNQHLNEAIKG-HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (363)
Q Consensus 164 dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~ 242 (363)
||+++..+... ....+.+|+................. ..+ ...+....++++|.||++|+++|+ |+|+.+|+++
T Consensus 221 dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~--~~~-~~i~~~~~l~l~G~hn~~N~lAa~--a~a~~~gv~~ 295 (448)
T COG0771 221 DDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKLV--FKG-EKLLPADELKLPGAHNLENALAAL--ALARALGVPP 295 (448)
T ss_pred CcHHHhhhhhhcccceeEEEEccccccccceeecchhc--ccc-ccccchhhcCCcchhhHHHHHHHH--HHHHHcCCCH
Confidence 99999888765 34456677654332100000000000 011 112223478999999999999999 8999999999
Q ss_pred HHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhhcc
Q 017969 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322 (363)
Q Consensus 243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~ 322 (363)
+.|.++|.+|+++|||||.+. +.+|+.|||||+|+|++|+..||+.++ +|+++|+||.++.++ +..+.+.++
T Consensus 296 e~i~~~L~~F~gl~HR~e~v~-~~~gv~f~NDSKATN~~At~~AL~~~~-~~v~lI~GG~~Kg~d------f~~L~~~~~ 367 (448)
T COG0771 296 EAILEALSSFTGLPHRLEFVG-EKDGVLFINDSKATNVDATLAALSGFD-GPVILIAGGDDKGAD------FSPLAEILA 367 (448)
T ss_pred HHHHHHHHhCCCCCcceEEEE-ecCCEEEecCCCCCCHHHHHHHHHcCC-CCEEEEECCCCCCCC------hhHHHHHhh
Confidence 999999999999999999998 689999999999999999999999998 689999999999865 667999888
Q ss_pred c-CcEEEEEcccchHHHHhhCC
Q 017969 323 H-HRCVITVCALLFLKIVIQFP 343 (363)
Q Consensus 323 ~-~~~vi~~G~~~~~~~~~~~~ 343 (363)
+ ...+|++|+.. .++.+.+.
T Consensus 368 ~~~~~~~~~G~~~-~~i~~~l~ 388 (448)
T COG0771 368 KVIKKLVLIGEDA-EKIAAALK 388 (448)
T ss_pred hcceEEEEeCCCH-HHHHHHHH
Confidence 6 67799999996 57777664
No 2
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=100.00 E-value=1.2e-57 Score=449.35 Aligned_cols=311 Identities=23% Similarity=0.418 Sum_probs=260.5
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~ 83 (363)
++|+||+++++||++++|+++|+|+++++|++++.+ +.++|+||||||||||++||+++|+.+|.++.++||+|.|..
T Consensus 65 ~vv~sp~i~~~~p~~~~a~~~~i~i~~~~e~~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~~~ 142 (433)
T TIGR01087 65 LVVKSPGIPPDHPLVQAAAKRGIPVVGDIELFLRLV--PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTPAL 142 (433)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHHHH
Confidence 689999999999999999999999999999998887 568999999999999999999999999999999999999954
Q ss_pred hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017969 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~ 163 (363)
.... ..+.|++|+|+|+++++.+.. ++|+++|||||++||+|+|||+|+|+++|.++++.+++++.+|+|.
T Consensus 143 ~~~~--------~~~~~~~V~E~~~~~l~~~~~-~~p~iaViTNI~~DHld~~gs~e~~~~~K~~i~~~~~~~~~~i~n~ 213 (433)
T TIGR01087 143 EVLD--------QEGAELYVLELSSFQLETTES-LRPEIALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLNA 213 (433)
T ss_pred HHHh--------ccCCCEEEEEcChhHhcCCcc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 3321 145789999999999886655 8999999999999999999999999999999999988889999999
Q ss_pred CChhHHHHHhcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHH
Q 017969 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE 243 (363)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~ 243 (363)
||+.+..+......++++|+...+.. ..+.....+..+......++++|.||++|+++|+ +++..+|++++
T Consensus 214 dd~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi~~~ 284 (433)
T TIGR01087 214 DDPRFARLAQKSKAQVIWFSVEKDAE-------RGLCIRDGGLYLKPNDLEGSLLGLHNAENILAAI--ALAKSLGLNLE 284 (433)
T ss_pred CCHHHHHhhhhcCceEEEEeCCccCC-------CceEEECCEEEEeccccccCCCcHHHHHHHHHHH--HHHHHcCCCHH
Confidence 99987776655556788888542111 0111111111111112478999999999999999 89999999999
Q ss_pred HHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhhccc
Q 017969 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323 (363)
Q Consensus 244 ~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~~ 323 (363)
+|+++|++|+++|||||++. ..+++++|||+++|||+|+.++++.++. ++++|+|++.+.++ ++++.+.+..
T Consensus 285 ~i~~~L~~f~g~~~R~e~v~-~~~g~~~idD~~atn~~a~~~al~~~~~-~ii~I~Gg~~~~~d------~~~~~~~l~~ 356 (433)
T TIGR01087 285 AILEALRSFKGLPHRLEYVG-QKNGVHFYNDSKATNVHATLAALSAFDN-PVILIVGGDDKGAD------FSPLAPAAAG 356 (433)
T ss_pred HHHHHHHhCCCCCCceEEEE-EECCEEEEEcCCCCCHHHHHHHHHhCCC-CEEEEEcCCCCCCC------HHHHHHHHHh
Confidence 99999999999999999996 4678999999999999999999999964 78999999887644 6678887764
Q ss_pred -CcEEEEEcccchHHHHhhCC
Q 017969 324 -HRCVITVCALLFLKIVIQFP 343 (363)
Q Consensus 324 -~~~vi~~G~~~~~~~~~~~~ 343 (363)
.+.++++|+.. ..+.+.+.
T Consensus 357 ~~~~v~~~G~~~-~~l~~~~~ 376 (433)
T TIGR01087 357 KVKAVLAIGEDA-AKIAPLLK 376 (433)
T ss_pred hCCEEEEECCCH-HHHHHHHH
Confidence 67899999986 56777664
No 3
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.4e-57 Score=448.92 Aligned_cols=314 Identities=25% Similarity=0.354 Sum_probs=257.6
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~ 83 (363)
++|.||+++++||++++|+++|+|+++++|++++.. ++.++|+||||||||||++||++||+.+|.++.++||+|.|..
T Consensus 66 ~vV~SPgI~~~~p~~~~a~~~gi~v~~e~el~~~~~-~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~p~l 144 (454)
T PRK01368 66 KIVLSPGIPLTHEIVKIAKNFNIPITSDIDLLFEKS-KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVPAL 144 (454)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCceecHHHHHHHHh-cCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCHHHh
Confidence 689999999999999999999999999999998876 3568999999999999999999999999999999999999975
Q ss_pred hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017969 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~ 163 (363)
.. ..+.+++|+|+|++|++.... ++|+++|||||++||+|||+|+|+|+.+|.+|++++++++.+|+|.
T Consensus 145 ~~----------~~~~~~~VlE~ss~ql~~~~~-~~P~iavitNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~ 213 (454)
T PRK01368 145 QA----------KASKDGYVLELSSFQLDLVKT-FTAKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVINI 213 (454)
T ss_pred cc----------cCCCCEEEEEcCchhhccccc-cCCCEEEEecCChhHhhccCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 32 223588999999999987654 8999999999999999999999999999999999988889999999
Q ss_pred CChhHHHHHhc----CCccEEEeccCCCce--eccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHH
Q 017969 164 GNQHLNEAIKG----HRFNLAWIGAFPGVK--IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD 237 (363)
Q Consensus 164 dd~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~ 237 (363)
||+.+..+... ...++++|+...... +........+.+.. ..... ..+.++++|.||++|+++|+ +++..
T Consensus 214 Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~l~G~hn~~Na~aAi--a~~~~ 289 (454)
T PRK01368 214 DNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFD-DISFK-LPFNKNLQGKHNCENIAASY--AVAKI 289 (454)
T ss_pred CcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecC-CcceE-EEecCCCCchhhHHHHHHHH--HHHHH
Confidence 99988776532 223677887532110 00000001111100 10111 12357899999999999999 88999
Q ss_pred cCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhh
Q 017969 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317 (363)
Q Consensus 238 lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l 317 (363)
+|++.+.|+++|.+|+++|||||++. +.+++++||||+||||+|+++++++++ ++++|+|++++.+ +++.|
T Consensus 290 lgi~~~~i~~~L~~F~~~~~Rle~v~-~~~gv~~i~DS~atN~~a~~~al~~~~--~i~lI~Gg~dk~~------~~~~L 360 (454)
T PRK01368 290 IGVEPKKILESISSFQSLPHRMQYIG-SINNISFYNDSKATNAISAVQSIKALD--NIYWLAGGIPKEG------GIEEI 360 (454)
T ss_pred cCCCHHHHHHHHHhCCCCCcceEEEE-EECCeEEEECCCCCCHHHHHHHHHhcC--CeEEEecccCCCC------CHHHH
Confidence 99999999999999999999999997 468899999999999999999999995 6899999997653 47788
Q ss_pred hhhcccCcEEEEEcccchHHHHhhCC
Q 017969 318 IEPLNHHRCVITVCALLFLKIVIQFP 343 (363)
Q Consensus 318 ~~~l~~~~~vi~~G~~~~~~~~~~~~ 343 (363)
.+.+.++..+++.|+.. ..+.+.+.
T Consensus 361 ~~~~~~v~~v~~~g~~~-~~l~~~~~ 385 (454)
T PRK01368 361 KPYFSKIKKAYFYGQAK-EIFANTAK 385 (454)
T ss_pred HHHHHhhcEEEEECcCH-HHHHHHhh
Confidence 88777788889999876 67777663
No 4
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=6.4e-57 Score=444.25 Aligned_cols=302 Identities=27% Similarity=0.398 Sum_probs=249.8
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~ 83 (363)
++|+||+++++||++++|+++|+|+++++|++++.. +.++|+||||||||||++||+++|+..|.++.++||+|.|..
T Consensus 71 ~vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG~~~~ 148 (438)
T PRK04663 71 LVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAV--DKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVPAL 148 (438)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccCHHHH
Confidence 589999999999999999999999999999998877 468999999999999999999999999999999999999974
Q ss_pred hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017969 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~ 163 (363)
... ..+.|++|+|+|+++++.... ++|+++|||||++||+|+|||+|+|+++|.++++. .+.+|+|.
T Consensus 149 ~~~---------~~~~~~~V~E~ss~~l~~~~~-~~p~iavitNi~~dHld~~gs~e~y~~aK~~i~~~---~~~~v~n~ 215 (438)
T PRK04663 149 DLL---------EQDAELYVLELSSFQLETTSS-LKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH---AELAVVNR 215 (438)
T ss_pred hhh---------cCCCCEEEEEcChhhhccCcc-cCCCEEEEecCChhhCcccCCHHHHHHHHHHHHhC---CCEEEEeC
Confidence 321 235689999999999875443 89999999999999999999999999999999985 47999999
Q ss_pred CChhHHHHHhcCCccEEEeccCC-CceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCH
Q 017969 164 GNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (363)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~ 242 (363)
||+....... ..++++||... ++.... .....+.+.. +.. .+....++++|.||++|+++|+ +++..+|+++
T Consensus 216 dd~~~~~~~~--~~~~~~~g~~~~~~~~~~-~~~~~~~~~~-~~~-~~~~~~l~l~G~hNv~NalaAi--a~a~~lGi~~ 288 (438)
T PRK04663 216 DDKQTYPDHA--ELQLVTFGFDQQDFGLAQ-HQGREWLADN-GQP-VLASAELKLVGRHNVANVLVVL--ALLDAAGVDY 288 (438)
T ss_pred CCHHHHhhhc--CCcEEEEecCCCCCCeEe-cCCeEEEEeC-Cce-eeehhhcCCcchhhHHHHHHHH--HHHHHcCCCH
Confidence 9998654432 34677887542 221111 0111222221 111 1223578999999999999999 8999999999
Q ss_pred HHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc-CCcEEEEEcCCCCCCCCCCccchhhhhhhc
Q 017969 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPL 321 (363)
Q Consensus 243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l 321 (363)
++|+++|++|++++||||++. ..+++++|||+||+||+|+.+|++.+. ++|+++|+|+|.++++ ++++.+.+
T Consensus 289 ~~i~~~L~~f~g~~~R~e~v~-~~~g~~~idDs~~tn~~s~~~Al~~~~~~~~~i~IlGg~~~~~~------~~~l~~~~ 361 (438)
T PRK04663 289 RKALDALKSYTGLTHRCQVVA-DNHGIKWVNDSKATNVASTLAALSGLEIEGKLYLLVGGVGKGAD------FSPLKPVL 361 (438)
T ss_pred HHHHHHHHhCCCCCCceEEee-eeCCcEEEeCCCcCCHHHHHHHHHhcccCCcEEEEECCccCCCC------HHHHHHHH
Confidence 999999999999999999996 457899999999999999999999985 3579999999998875 56788877
Q ss_pred cc-CcEEEEEcccc
Q 017969 322 NH-HRCVITVCALL 334 (363)
Q Consensus 322 ~~-~~~vi~~G~~~ 334 (363)
+. .+.++++|+..
T Consensus 362 ~~~~~~vi~~G~~~ 375 (438)
T PRK04663 362 ATLNLQLCCFGEDG 375 (438)
T ss_pred HhhCcEEEEECCCH
Confidence 53 45899999986
No 5
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=7.8e-57 Score=448.20 Aligned_cols=318 Identities=23% Similarity=0.317 Sum_probs=253.8
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCC-----CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeeccc
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-----RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL 78 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~-----~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gni 78 (363)
++|.||++|++||++++|+++|+|+++++|++++... .+.++|+||||||||||++||+++|+..|.++.+.||+
T Consensus 73 ~VV~SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gni 152 (488)
T PRK03369 73 LVVTSPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNI 152 (488)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCC
Confidence 6899999999999999999999999999999876541 13479999999999999999999999999999999999
Q ss_pred chhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcE
Q 017969 79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL 158 (363)
Q Consensus 79 g~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~ 158 (363)
|.|+.... ..+.|++|+|+|+++++.+. .++|+++|||||++||+|+|||+|+|+.+|++|++ ++.
T Consensus 153 G~p~~~~~---------~~~~~~~VlE~ss~ql~~~~-~~~P~vaVITNI~~DHLd~~gt~e~ya~aK~~I~~----~~~ 218 (488)
T PRK03369 153 GSPVLDVL---------DEPAELLAVELSSFQLHWAP-SLRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALT----GRV 218 (488)
T ss_pred chHHHHhc---------cCCCCEEEEECChHHhCccc-ccCCCEEEEcCCCHHHhhhcCCHHHHHHHHHHHhc----CCE
Confidence 99985421 34678999999999987654 48999999999999999999999999999999997 478
Q ss_pred EEEeCCChhHHHHHhcCCcc-EEEeccCC----CceeccccccceEEEe--cCCeEEEEEeeccCCCchhHHHHHHHHHH
Q 017969 159 GLLPFGNQHLNEAIKGHRFN-LAWIGAFP----GVKIDTEAKTASFEVP--AVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231 (363)
Q Consensus 159 ~v~n~dd~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~l~G~h~~~Nal~A~~ 231 (363)
+|+|.||+....+....... ...++... ++... + ..+... ..+.. ......++++|.||++|+++|+
T Consensus 219 ~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~-~~~~~~l~l~G~hnv~NalaAl- 292 (488)
T PRK03369 219 AVVGLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVR-D---GHLVDRAFADDLR-LAPVASIPVPGPVGVLDALAAA- 292 (488)
T ss_pred EEEECCCHHHHHHHHhCCCcEEEEEeCCCCCcCCceEE-C---CEEEEeccCCccc-eechhhcCCCcHhHHHHHHHHH-
Confidence 99999999887765433222 23332211 11111 0 011000 00100 1112468899999999999999
Q ss_pred HHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCc
Q 017969 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311 (363)
Q Consensus 232 ~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~ 311 (363)
+++..+|+++++|+++|++|+++|||||++. ..+++.||||||||||+|++++++.++ ++++|+|++.+..
T Consensus 293 -a~a~~lGi~~e~i~~~L~~f~~~~gR~E~v~-~~~gv~iIDDS~AhNp~s~~aal~~~~--~iilI~GG~~k~~----- 363 (488)
T PRK03369 293 -ALARAVGVPAGAIADALASFRVGRHRAEVVA-VADGITYVDDSKATNPHAARASILAYP--RVVWIAGGLLKGA----- 363 (488)
T ss_pred -HHHHHcCCCHHHHHHHHHhCCCCCCccEEEE-cCCCEEEEECCCCCCHHHHHHHHHhCC--CeEEEecCcCCCC-----
Confidence 8999999999999999999999999999996 467899999999999999999999984 6899999998864
Q ss_pred cchhhhhhhcc-cCcEEEEEcccchHHHHhhCCCCCccccee
Q 017969 312 NGFEKLIEPLN-HHRCVITVCALLFLKIVIQFPKKEFSLPFS 352 (363)
Q Consensus 312 ~~~~~l~~~l~-~~~~vi~~G~~~~~~~~~~~~~~~~~~~~~ 352 (363)
+++.+.+.++ +++.++++|+.. ..+.+.+.+.....|+.
T Consensus 364 -d~~~l~~~l~~~~~~vi~iG~~~-~~i~~~l~~~~~~~~~~ 403 (488)
T PRK03369 364 -SVDALVAEMASRLVGAVLIGRDR-AVVAEALSRHAPDVPVV 403 (488)
T ss_pred -CHHHHHHHHhhheeEEEEEcCCH-HHHHHHHHhcCCCCCEE
Confidence 4778888886 589999999997 57777774322334443
No 6
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.4e-56 Score=441.38 Aligned_cols=314 Identities=26% Similarity=0.445 Sum_probs=256.9
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCC-CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~ 82 (363)
++|+||+++|+||++++|+++|+|++++++++++... .+.++|+||||||||||++||+++|+..|.++.+.||+|.|+
T Consensus 70 ~vv~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~GniG~~~ 149 (445)
T PRK04308 70 ILALSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV 149 (445)
T ss_pred EEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCccHHH
Confidence 6899999999999999999999999999999988752 135899999999999999999999999999999999999998
Q ss_pred hhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEe
Q 017969 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n 162 (363)
....... ...+.|++|+|+|+++++.+.. ++|+++|||||++||+++|+|+|+|+.+|++|++ +++.+|+|
T Consensus 150 ~~~~~~~-----~~~~~d~~VlE~~~~~l~~~~~-~~p~iaviTNI~~DHld~~~t~e~~~~~K~~i~~---~~~~~i~n 220 (445)
T PRK04308 150 LEAELQR-----EGKKADVWVLELSSFQLENTES-LRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFR---GDGVQVLN 220 (445)
T ss_pred HHHHHhh-----cCCCCcEEEEEeChHHhCcCcc-cCCCEEEEecCChHHhcccCCHHHHHHHHHHHhc---CCCEEEEe
Confidence 6544210 1235799999999999887655 8999999999999999999999999999999997 46899999
Q ss_pred CCChhHHHHHhcCCccEEEeccCC--CceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCC
Q 017969 163 FGNQHLNEAIKGHRFNLAWIGAFP--GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (363)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi 240 (363)
.||+....+... ..++++|+... ++..... ...+.+. +.. ......++++|.||++|+++|+ +++..+|+
T Consensus 221 ~dd~~~~~~~~~-~~~v~~~~~~~~~d~~~~~~--~~~~~~~--~~~-~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi 292 (445)
T PRK04308 221 ADDAFCRAMKRA-GREVKWFSLEHEADFWLERE--TGRLKQG--NED-LIATQDIPLQGLHNAANVMAAV--ALCEAVGL 292 (445)
T ss_pred CCcHHHHHHhhc-CCcEEEecCCCCCceeEecc--CCEEEEc--Cce-eeehhccCCcChhhHHHHHHHH--HHHHHcCC
Confidence 999988776543 45677887532 2211110 1112221 111 1122468999999999999999 88999999
Q ss_pred CHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhh
Q 017969 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320 (363)
Q Consensus 241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~ 320 (363)
++++|+++|++|+++|||||++. ..+++.+|||+|+|||+|++++++.+. +++++|+|+|.+.++ |+++.+.
T Consensus 293 ~~~~i~~~L~~f~~~~~R~e~~~-~~~~~~~iDDs~~~n~~s~~~al~~~~-~~~i~IlGg~~~~~~------~~~~~~~ 364 (445)
T PRK04308 293 PREALLEHVKTFQGLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGKGQD------FTPLRDA 364 (445)
T ss_pred CHHHHHHHHhhCCCCCCceEEEE-eeCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEeCCCCCCCC------HHHHHHH
Confidence 99999999999999999999996 457889999999999999999999995 478999999988755 5566666
Q ss_pred ccc-CcEEEEEcccchHHHHhhCC
Q 017969 321 LNH-HRCVITVCALLFLKIVIQFP 343 (363)
Q Consensus 321 l~~-~~~vi~~G~~~~~~~~~~~~ 343 (363)
+.+ ++.++++|+.+ ..+.+.+.
T Consensus 365 l~~~~~~vil~G~~~-~~l~~~l~ 387 (445)
T PRK04308 365 LAGKAKGVFLIGVDA-PQIRRDLD 387 (445)
T ss_pred HHHhCcEEEEECCCH-HHHHHHHH
Confidence 654 79999999986 56666553
No 7
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.1e-56 Score=441.04 Aligned_cols=311 Identities=26% Similarity=0.383 Sum_probs=256.4
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~ 83 (363)
++|+||+++++||++++|+++|+|+++++|++++.. +.++|+||||||||||++||+++|+..|.++.++||+|.|..
T Consensus 71 ~vV~sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~~ 148 (448)
T PRK03803 71 EIIISPGLALDTPALRAAAAMGIEVIGDIELFAREA--KAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPAL 148 (448)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHHH
Confidence 689999999999999999999999999999998887 568999999999999999999999999999999999999985
Q ss_pred hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017969 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~ 163 (363)
... ..+.|++|+|+|+++++.+.. ++|+++|||||++||+|+|||+|+|+++|.++++. .+.+|+|.
T Consensus 149 ~~~---------~~~~~~~V~E~ss~~l~~~~~-~~P~iaVITNI~~DHld~~gs~e~~~~~K~~i~~~---~~~~V~n~ 215 (448)
T PRK03803 149 DLL---------SDDPELYVLELSSFQLETTHS-LNAEVATVLNISEDHMDRYSDLEAYHQAKHRIYRG---AKQVVFNR 215 (448)
T ss_pred HHh---------cCCCCEEEEEcChhhhCcCcc-cCccEEEEecCChhHcccCCCHHHHHHHHHHHHhC---CCeEEEeC
Confidence 422 224589999999999987766 89999999999999999999999999999999984 57899999
Q ss_pred CChhHHHHHhcCCccEEEeccCC----CceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcC
Q 017969 164 GNQHLNEAIKGHRFNLAWIGAFP----GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239 (363)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lg 239 (363)
||+....+... ..++++|+... ++.+... ....+.+. .+ ...+....++++|.||++|+++|+ +++..+|
T Consensus 216 dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~~~~~~l~l~G~Hn~~NalaAi--a~a~~lg 289 (448)
T PRK03803 216 DDALTRPLVPD-NQPCLSFGLNAPDFDEWGLREG-DGETYLAH-GF-ERLMPVRELKLRGSHNLANALAAL--ALGEAAG 289 (448)
T ss_pred CCHHHHHHhhc-CCcEEEEeCCCCCcCceEEEec-CCeEEEEe-CC-ceEEehhccCCCCHHHHHHHHHHH--HHHHHcC
Confidence 99988776542 24577787531 1111100 11112221 11 111123568999999999999999 8999999
Q ss_pred CCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchhh
Q 017969 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEK 316 (363)
Q Consensus 240 i~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~~ 316 (363)
+++++|+++|++|+++|||||++. ..+++.+|||++||||+|+.+|++.++ ++|+++|+|++.+.+ ++++
T Consensus 290 i~~~~i~~~L~~f~g~~~R~e~v~-~~~gv~~idDs~atN~~a~~~al~~l~~~~~~~iilI~Gg~~k~~------d~~~ 362 (448)
T PRK03803 290 LPKEAMLEVLRTFTGLPHRCEWVR-EVAGVDYYNDSKGTNVGATVAAIEGLGAHIQGKLVLIAGGDGKGA------DFSP 362 (448)
T ss_pred CCHHHHHHHHhhCCCCCCceEEEE-EeCCeEEEEcCCcCCHHHHHHHHHhhhhcCCCCEEEEECCCCCCC------CHHH
Confidence 999999999999999999999997 467889999999999999999999985 257999999998754 4677
Q ss_pred hhhhccc-CcEEEEEcccchHHHHhhCC
Q 017969 317 LIEPLNH-HRCVITVCALLFLKIVIQFP 343 (363)
Q Consensus 317 l~~~l~~-~~~vi~~G~~~~~~~~~~~~ 343 (363)
+.+.+.+ ++.++++|+.. ..+.+.+.
T Consensus 363 l~~~l~~~~~~vil~G~~~-~~i~~~l~ 389 (448)
T PRK03803 363 LREPVAKYVRAVVLIGRDA-DKIAAALG 389 (448)
T ss_pred HHHHHHhhCCEEEEECCCH-HHHHHHHh
Confidence 8887764 78999999886 56776663
No 8
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.7e-56 Score=441.95 Aligned_cols=312 Identities=27% Similarity=0.349 Sum_probs=256.7
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~ 83 (363)
++|.||+++++||++++|++.|+|++++++++++.. +.++|+||||||||||++||+++|+..|.++.++||+|.|+.
T Consensus 80 lVV~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~--~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gniG~p~~ 157 (458)
T PRK01710 80 VIFKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYC--PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTPLF 157 (458)
T ss_pred EEEECCCCCCCchHHHHHHHcCCcEEechHHhhhhc--CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCccChhHH
Confidence 689999999999999999999999999999888765 568999999999999999999999999999989999999987
Q ss_pred hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017969 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~ 163 (363)
.... ...+.|++|+|+|++++.... ++|+++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+|.
T Consensus 158 ~~~~-------~~~~~~~~VlE~~~~~~~~~~--~~PdiaViTNI~~dHld~~~s~e~~~~aK~~i~~~~~~~~~~v~n~ 228 (458)
T PRK01710 158 SNIE-------EIKEEDKVVLELSSFQLMTMD--VSPEVAVVTNLSPNHLDVHKDMEEYIDAKKNIFKYQSENDLLVLNK 228 (458)
T ss_pred HHHh-------hCCCCCEEEEEcCccccccCC--CCCCEEEEecCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 4321 123568999999998877654 6999999999999999999999999999999999888899999999
Q ss_pred CChhHHHHHhcCCccEEEeccCCCceecccc-ccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCH
Q 017969 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA-KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (363)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~ 242 (363)
||+.+..+......++++||...+... ... ....+.+. +... .....++++|.||++|+++|+ +++..+ +++
T Consensus 229 Dd~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~~--~~~~-~~~~~l~l~G~hnv~NalaA~--a~a~~~-i~~ 301 (458)
T PRK01710 229 DNEITNGMEKEAKGDVVKFSRKEKVYE-GAYLKNGKLYIR--GKEV-CKKDDIKLKGMHNVENLLAAF--CAVNDD-VSI 301 (458)
T ss_pred CcHHHHHHHhhcCCcEEEEeCCCCCCC-ceEEeCCEEEEc--CceE-EEhhhcCCccHhHHHHHHHHH--HHHHhC-CCH
Confidence 999887776444456788875321100 000 01112221 1111 113578999999999999999 777776 999
Q ss_pred HHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhhcc
Q 017969 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322 (363)
Q Consensus 243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~ 322 (363)
++|+++|++|++++||||.+. ..+|+++|||+|||||+|+.+|++.+++ ++++|+|+..+. .+|+++++.+.
T Consensus 302 ~~i~~~L~~f~~~~~R~e~~~-~~~g~~~i~Dsy~~np~s~~~al~~~~~-~~i~IlGg~~~~------~~~~~l~~~~~ 373 (458)
T PRK01710 302 ESMKKVATTFSGVEHRCEFVR-EINGVKYYNDSIASSPTRTLAGLKAFEK-PVILIAGGYDKK------IPFEPLAEEGY 373 (458)
T ss_pred HHHHHHHHhCCCCCcceEEEE-EECCEEEecccccCCHHHHHHHHHhCCC-CEEEEeCCcCCC------CCHHHHHHHHH
Confidence 999999999999999999986 4688999999999999999999999965 689999975442 46899999775
Q ss_pred -cCcEEEEEcccchHHHHhhC
Q 017969 323 -HHRCVITVCALLFLKIVIQF 342 (363)
Q Consensus 323 -~~~~vi~~G~~~~~~~~~~~ 342 (363)
.++.+|++|+.+ ..+.+.+
T Consensus 374 ~~~~~vi~~G~~~-~~~~~~~ 393 (458)
T PRK01710 374 EKIKTLILMGATK-NKIKEAF 393 (458)
T ss_pred hhccEEEEECCCH-HHHHHHH
Confidence 589999999997 5666655
No 9
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.3e-55 Score=435.19 Aligned_cols=318 Identities=25% Similarity=0.399 Sum_probs=254.9
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~ 83 (363)
++|+||+++++||++++|++.|++++++++++++.. ++.++|+||||||||||++||+++|+.+|.++...||+|.|.+
T Consensus 71 ~vv~s~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~-~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gniG~~~~ 149 (459)
T PRK02705 71 LVVVSPGIPWDHPTLVELRERGIEVIGEIELAWRAL-KHIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNIGYAAC 149 (459)
T ss_pred EEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhh-cCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEecccChhHH
Confidence 578999999999999999999999999999988876 3678999999999999999999999999999999999999987
Q ss_pred hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017969 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~ 163 (363)
.... +. .....+.|++|+|+|+++++..+. ++|+++|||||++||+++|||+|+|+.+|++|++. ++.+|+|.
T Consensus 150 ~~~~--~~-~~~~~~~d~~VlE~~s~~l~~~~~-~~p~iaVITNI~~DHld~~gt~e~~~~~K~~i~~~---~~~~Vln~ 222 (459)
T PRK02705 150 ELAL--LR-SGKAQKPDWIVAELSSYQIESSPE-LAPKIGIWTTFTPDHLERHGTLENYFAIKASLLER---SEIRILNG 222 (459)
T ss_pred HHHh--hh-hccCCCCCEEEEEccccccccCcc-cCCCEEEEecCChhhhcccCCHHHHHHHHHHHhcc---CCEEEEEC
Confidence 6432 00 011346799999999999998877 89999999999999999999999999999999984 68999999
Q ss_pred CChhHHHHHhcCCccEEEeccCC-Cceeccc-c--ccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcC
Q 017969 164 GNQHLNEAIKGHRFNLAWIGAFP-GVKIDTE-A--KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239 (363)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lg 239 (363)
||+.+..+..... ..++++... ....... . ......+...+. .+....++++|.||++|+++|+ +++..+|
T Consensus 223 dd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~l~G~hn~~NalaAi--a~a~~lg 297 (459)
T PRK02705 223 DDPYLRQHRSSWP-KGYWTSTQGKASLLGQADGWILEEGWVVERGEP--LFPLSALKMPGAHNLQNLLLAV--AAARLAG 297 (459)
T ss_pred CCHHHHHHHhcCC-ceEEeccCCccccccccceeEecCCEEEECCcc--eeeHHHcCCccHHHHHHHHHHH--HHHHHcC
Confidence 9998877754332 345665421 1111000 0 000011111110 1112368999999999999999 8999999
Q ss_pred CCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhh
Q 017969 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319 (363)
Q Consensus 240 i~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~ 319 (363)
++++.|+++|++|+++|||||++. ..+++.+|||+|||||+|++++++.+++ ++++|+|+|.+.++ +.++.+
T Consensus 298 v~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~ii~Ds~a~N~~s~~~al~~l~~-~~i~IlGg~~~~~d------~~~~~~ 369 (459)
T PRK02705 298 LSAEAIAEALRSFPGVPHRLERIG-TINGIDFINDSKATNYDAAEVGLKAVPG-PVILIAGGEAKQGD------DSAWLK 369 (459)
T ss_pred CCHHHHHHHHHhCCCCCCceEEEE-eeCCcEEEEeCCCCCHHHHHHHHHhCCC-CeEEEecCccCCCC------HHHHHH
Confidence 999999999999999999999996 4568899999999999999999999964 78999999998875 445666
Q ss_pred hcc-cCcEEEEEcccchHHHHhhCC
Q 017969 320 PLN-HHRCVITVCALLFLKIVIQFP 343 (363)
Q Consensus 320 ~l~-~~~~vi~~G~~~~~~~~~~~~ 343 (363)
.+. .++.+|++|+.. ..+.+.+.
T Consensus 370 ~l~~~~~~vi~~g~~~-~~l~~~l~ 393 (459)
T PRK02705 370 QIKAKAAAVLLFGEAA-PTLAQRLQ 393 (459)
T ss_pred HHHhheeEEEEECCCH-HHHHHHHH
Confidence 664 489999999886 56666664
No 10
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.8e-55 Score=432.70 Aligned_cols=316 Identities=26% Similarity=0.378 Sum_probs=258.4
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~ 83 (363)
++|.+|+++++||++++|+++|+|+++++|++++.. +.++|+||||||||||++||+++|+..|.++.+.||+|.|.+
T Consensus 71 ~vV~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~--~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gnig~p~~ 148 (447)
T PRK02472 71 LMVKNPGIPYTNPMVEKALEKGIPIITEVELAYLIS--EAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYPAS 148 (447)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcccChhhH
Confidence 579999999999999999999999999999877765 568999999999999999999999999999999999999987
Q ss_pred hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017969 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~ 163 (363)
.... ...+.|++|+|+|++++..... ++|+++|||||++||+++|||+|+|+.+|++|++..++++.+|+|.
T Consensus 149 ~~~~-------~~~~~~~~V~E~ss~~~~~~~~-~~P~iaVITnI~~DHld~~gt~e~i~~~K~~i~~~~~~~~~~v~n~ 220 (447)
T PRK02472 149 EVAQ-------KATADDTLVMELSSFQLMGIET-FRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVINF 220 (447)
T ss_pred HHHh-------cCCCCCEEEEEcCchhhCcccc-cCCCEEEEeccChhhhcccCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 5321 1235689999999988775444 8999999999999999999999999999999999888889999999
Q ss_pred CChhHHHHHhcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHH
Q 017969 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE 243 (363)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~ 243 (363)
||+.+..+......++++|+...+...........+.+. +.. .+....++++|.||++|+++|+ +++..+|++++
T Consensus 221 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~l~G~hn~~Na~aAi--a~~~~lgi~~~ 295 (447)
T PRK02472 221 DQEEVKELAKQTKATVVPFSTTEKVEDGAYIKDGALYFK--GEK-IMAADDIVLPGSHNLENALAAI--AAAKLLGVSNE 295 (447)
T ss_pred CcHHHHHHHhhcCceEEEeecCCCCcCceEEECCEEEEC--Cce-EEehhhcCCCCHHHHHHHHHHH--HHHHHcCCCHH
Confidence 999887766555556778875422100000000112221 111 1122368999999999999999 88999999999
Q ss_pred HHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhhccc
Q 017969 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323 (363)
Q Consensus 244 ~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~~ 323 (363)
+|+++|++|++++||||++. ..+++++|||+|||||+|+.++++.++ +++++|+|+..+. .+|+++.+.+.+
T Consensus 296 ~i~~~L~~f~~~~~R~e~~~-~~~g~~vi~D~~a~N~~s~~~al~~~~-~~ii~I~g~~~~~------~~~~~l~~~l~~ 367 (447)
T PRK02472 296 AIREVLSTFSGVKHRLQYVG-TIDGRKFYNDSKATNILATQKALSGFN-QPVVLLAGGLDRG------NEFDELVPYLKN 367 (447)
T ss_pred HHHHHHHhCCCCCCcceEEE-EECCeEEEECCCCCCHHHHHHHHHhCC-CCEEEEECCCCCC------CCHHHHHHHHhc
Confidence 99999999999999999996 456889999999999999999999984 5789999975432 358889888877
Q ss_pred CcEEEEEcccchHHHHhhCC
Q 017969 324 HRCVITVCALLFLKIVIQFP 343 (363)
Q Consensus 324 ~~~vi~~G~~~~~~~~~~~~ 343 (363)
++.++++|+.. ..+.+.+.
T Consensus 368 ~~~v~~~G~~~-~~l~~~~~ 386 (447)
T PRK02472 368 VKAMVVFGETA-EKLARAAE 386 (447)
T ss_pred cCEEEEECCCH-HHHHHHHH
Confidence 89999999986 56776653
No 11
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.6e-54 Score=426.22 Aligned_cols=310 Identities=25% Similarity=0.378 Sum_probs=251.8
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~ 83 (363)
++|.||+++++||++++|+++|++++++.+++++.. +.++|+||||||||||++||+++|+..|.++.++||+|.|..
T Consensus 68 ~vv~spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gnig~p~~ 145 (438)
T PRK03806 68 LIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLPAL 145 (438)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCcchhHH
Confidence 689999999999999999999999999999987766 568999999999999999999999999999999999999974
Q ss_pred hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEEEe
Q 017969 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLP 162 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v~n 162 (363)
.. . ..+.+++|+|+|+++++.+.. ++|+++|||||++||+|+| +|+|+|+.+|.+|++. .+.+|+|
T Consensus 146 ~~-~--------~~~~~~~V~E~ss~~l~~~~~-~~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~---~~~~v~n 212 (438)
T PRK03806 146 SL-L--------DQECELYVLELSSFQLETTSS-LKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVN 212 (438)
T ss_pred Hh-h--------ccCCCEEEEEccchhhccCcc-cCCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhC---CCeEEEe
Confidence 32 1 345689999999999887655 8999999999999999999 5999999999999984 5789999
Q ss_pred CCChhHHHHHhcCCccEEEeccCC-CceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCC
Q 017969 163 FGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241 (363)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~ 241 (363)
.||+....+... ..++++|+... ++..... ....+.+...+ . .+..+.++++|.||++|+++|+ +++..+|++
T Consensus 213 ~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi~ 286 (438)
T PRK03806 213 ADDALTMPIRGA-DKRCVSFGVNMGDYHLNRQ-QGETWLRVKGE-K-VLNTKEMKLSGQHNYTNALAAL--ALADAVGIP 286 (438)
T ss_pred CCCHHHHHHhcC-CceEEEEecCCCceEEEec-CCeEEEEecCc-e-eeehhhcCCcccccHHHHHHHH--HHHHHcCCC
Confidence 999988775432 34567776431 2221110 11111211111 1 1123468999999999999999 899999999
Q ss_pred HHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc-CCcEEEEEcCCCCCCCCCCccchhhhhhh
Q 017969 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEP 320 (363)
Q Consensus 242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~~~i~IlG~~~~~g~~~~~~~~~~l~~~ 320 (363)
+++|+++|++|+++|||||++. ..+++.+|||+|||||+|++++++.+. ++|+++|+|++++.++ +.++.+.
T Consensus 287 ~~~i~~~L~~f~~~~gR~E~v~-~~~~~~~i~Ds~a~n~~a~~~al~~l~~~~~~i~IlG~~~k~~d------~~~l~~~ 359 (438)
T PRK03806 287 RASSLKALTTFTGLPHRFQLVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSAD------FSPLARY 359 (438)
T ss_pred HHHHHHHHHhCCCCCCeEEEEE-eeCCEEEEEcCCCCCHHHHHHHHHhCccCCcEEEEECCcCCCCC------HHHHHHH
Confidence 9999999999999999999996 457889999999999999999999996 3578999999888754 6678777
Q ss_pred cc-cCcEEEEEcccchHHHHhhC
Q 017969 321 LN-HHRCVITVCALLFLKIVIQF 342 (363)
Q Consensus 321 l~-~~~~vi~~G~~~~~~~~~~~ 342 (363)
++ ....++++|+.. ..+.+.+
T Consensus 360 l~~~~~~v~~~g~~~-~~l~~~~ 381 (438)
T PRK03806 360 LNGDNIRLYCFGRDG-AQLAALR 381 (438)
T ss_pred HHhhCcEEEEECCCH-HHHHHHh
Confidence 75 345899999975 5555543
No 12
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.7e-54 Score=427.55 Aligned_cols=317 Identities=25% Similarity=0.330 Sum_probs=253.3
Q ss_pred eeeeccccCCCcH----HHHHHHhcCCceeeHHHHHHhhCC---CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 4 LWLFLLEFQLKAT----GLACLLQSGKRVMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 4 ~~~~~~~~~~~~p----~l~~a~~~~~~~l~~~~~~~~~~~---~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
++|+||+++++|| ++..+++.|+|++++++++++.+. .+.++|+||||||||||++||+++|+..|.++.++|
T Consensus 68 ~vv~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~g 147 (460)
T PRK01390 68 ALVLSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQMGG 147 (460)
T ss_pred EEEECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEcC
Confidence 6899999999988 999999999999999999887631 256899999999999999999999999999999999
Q ss_pred ccchhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCC
Q 017969 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT 156 (363)
Q Consensus 77 nig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~ 156 (363)
|+|.|+..... ..+.|++|+|+|+++++.++. ++|+++|||||++||+++|||+|+|+.+|++|++..++
T Consensus 148 nig~~~~~~~~--------~~~~~~~V~E~~~~~ld~t~~-i~P~iaVITNI~~DHld~lgsle~ia~~K~~ii~~~~~- 217 (460)
T PRK01390 148 NIGTAVLTLEP--------PPAGRVYVLELSSYQIDLAPS-LDPDVGVLLNLTPDHLDRHGTMEGYAAAKERLFAGQGP- 217 (460)
T ss_pred ccchhhhhccc--------CCCCCEEEEEcCccccccccc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCC-
Confidence 99999865321 335789999999999987765 89999999999999999999999999999999998766
Q ss_pred cEEEEeCCChhHHHHHhcC---CccEEEeccCCCc--eeccccccceEEEecCCeEEEEEe-eccCCCchhHHHHHHHHH
Q 017969 157 KLGLLPFGNQHLNEAIKGH---RFNLAWIGAFPGV--KIDTEAKTASFEVPAVGVVSQLQL-HNMKVMGRHNYHNAAVAA 230 (363)
Q Consensus 157 ~~~v~n~dd~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~l~l~G~h~~~Nal~A~ 230 (363)
+.+|+|.||+.+..+.... ..++++|+..... ..... ....+..........+.. ..++++|.||++|+++|+
T Consensus 218 ~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAi 296 (460)
T PRK01390 218 DTAVIGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYAD-GGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAAAY 296 (460)
T ss_pred CEEEEeCCCHHHHHHHHhccccCceEEEEeCCCCCcCceEEe-CCEEEEecCCCcceeeeHHhhccCCchhHHHHHHHHH
Confidence 8999999999877665432 3456677653210 00000 011122211100001110 025799999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCC
Q 017969 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310 (363)
Q Consensus 231 ~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~ 310 (363)
+++..+|++++.|+++|++|+++|||||++. ..+++.+|||+|||||+|++++|+.++ ++++|+|+++++.
T Consensus 297 --aa~~~lgi~~~~i~~gL~~~~~~~gR~e~i~-~~~g~~vIdDs~ahNp~s~~~aL~~~~--~i~~I~G~~d~~~---- 367 (460)
T PRK01390 297 --AAARALGLSPEEIAAGLASFPGLAHRMEQVG-RRGGVLFVNDSKATNADAAAKALSSFD--RIYWIAGGKPKEG---- 367 (460)
T ss_pred --HHHHHcCCCHHHHHHHHHhCCCCCCceEEEe-eeCCcEEEEcCCCCCHHHHHHHHHhCC--CeEEEecCccCCC----
Confidence 8899999999999999999998999999996 357789999999999999999999884 7899999877653
Q ss_pred ccchhhhhhhcccCcEEEEEcccchHHHHhhCC
Q 017969 311 SNGFEKLIEPLNHHRCVITVCALLFLKIVIQFP 343 (363)
Q Consensus 311 ~~~~~~l~~~l~~~~~vi~~G~~~~~~~~~~~~ 343 (363)
.++.+.+.+..++.++++|... ..+.+.+.
T Consensus 368 --~~~~L~~~~~~v~~v~~~g~~~-~~l~~~~~ 397 (460)
T PRK01390 368 --GIESLAPFFPRIAKAYLIGEAA-EAFAATLG 397 (460)
T ss_pred --CHHHHHHHHHhhCEEEEECCCH-HHHHHHHh
Confidence 3666777666788899999886 67777664
No 13
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=5e-54 Score=425.99 Aligned_cols=313 Identities=23% Similarity=0.291 Sum_probs=251.4
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHH-HHhhCCC---CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccc
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDF-AAQVIPR---SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~-~~~~~~~---~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig 79 (363)
++|.||++|++||++++|+++++|+++++|+ +++.... ..++|+||||||||||++||+++|+..|.++.+.||+|
T Consensus 72 ~vV~SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~GniG 151 (468)
T PRK04690 72 VVVKSPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNIG 151 (468)
T ss_pred EEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCCCC
Confidence 6899999999999999999999999999998 4443311 24799999999999999999999999999999999999
Q ss_pred hhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCc-cccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcE
Q 017969 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL 158 (363)
Q Consensus 80 ~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~-~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~ 158 (363)
.|+..... ...+.|++|+|+|++++..... .++|+++|||||++||+|+|||+|+|..+|.+|++..++ +.
T Consensus 152 ~p~~~~~~-------~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~gs~e~y~~aK~~i~~~~~~-~~ 223 (468)
T PRK04690 152 VPLLEVLA-------PQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGRP-RI 223 (468)
T ss_pred cchHHHhc-------cCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccCCHHHHHHHHHHHHhCCCC-Ce
Confidence 99964322 1345689999999998876653 389999999999999999999999999999999987653 67
Q ss_pred EEEeCCChhHHHHHhcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHc
Q 017969 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238 (363)
Q Consensus 159 ~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~l 238 (363)
+|+|.||+....+.. ...++++|+...+.... ..+.+.. + ...+....++++|.||+.|+++|+ +++..+
T Consensus 224 ~v~n~dd~~~~~~~~-~~~~v~~~~~~~~~~~~-----~~~~~~~-~-~~~~~~~~~~l~G~h~~~Na~~A~--a~~~~l 293 (468)
T PRK04690 224 ALLNAADPRLAALQL-PDSEVVWFNHPDGWHVR-----GDVVYRG-E-QALFDTALVPLPGRHNRGNLCAVL--AALEAL 293 (468)
T ss_pred EEEeCccHHHHHHhc-CCCeEEEeeCCccceec-----ceEEEcC-C-ceEEeeccccCccHhhHHHHHHHH--HHHHHc
Confidence 899999998766532 23466777653221111 1122221 1 112223578899999999999999 889999
Q ss_pred CCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhh
Q 017969 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318 (363)
Q Consensus 239 gi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~ 318 (363)
|+++++|+++|++|+++|||||++. +.+|+.+||||+||||+|++++++.++++++++|+|++.++. +++.+.
T Consensus 294 gi~~~~i~~~l~~~~~~~gR~e~~~-~~~g~~iidDs~ahNp~a~~~al~~~~~~~i~~i~Gg~~k~k------d~~~l~ 366 (468)
T PRK04690 294 GLDAVALAPAAAGFRPLPNRLQELG-SRDGITYVNDSISTTPHASLAALDCFAGRRVALLVGGHDRGL------DWTDFA 366 (468)
T ss_pred CCCHHHHHHHHHhCCCCCCCcEEEE-ccCCeEEEEeCCCCCHHHHHHHHHhccCCcEEEEEcCCCCCC------CHHHHH
Confidence 9999999999999998999999996 456899999999999999999999997668999999876643 477888
Q ss_pred hhcc-c-CcEEEEEcccchHHHHhhC
Q 017969 319 EPLN-H-HRCVITVCALLFLKIVIQF 342 (363)
Q Consensus 319 ~~l~-~-~~~vi~~G~~~~~~~~~~~ 342 (363)
+.+. . .+.++++|+... .+.+.+
T Consensus 367 ~~l~~~~~~~v~~~g~~~~-r~~~~l 391 (468)
T PRK04690 367 AHMAQRAPLEIVTMGANGP-RIHALL 391 (468)
T ss_pred HHHHhccCeEEEEeCCCHH-HHHHHH
Confidence 8876 4 378899998863 344444
No 14
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=7.6e-54 Score=425.43 Aligned_cols=316 Identities=26% Similarity=0.351 Sum_probs=249.8
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhh-----CCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeeccc
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQV-----IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL 78 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~-----~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gni 78 (363)
++|+||+++++||++++|+++|++++++++++++. +..+.++|+||||||||||++||+++|+..|.++.+.||+
T Consensus 77 ~vV~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni 156 (473)
T PRK00141 77 LVVTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNI 156 (473)
T ss_pred EEEeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEeccC
Confidence 68999999999999999999999999999987664 2123479999999999999999999999999999999999
Q ss_pred chhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcE
Q 017969 79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL 158 (363)
Q Consensus 79 g~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~ 158 (363)
|.|++.... ...+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++++ .+.
T Consensus 157 g~p~~~~l~-------~~~~~~~~V~E~ss~~l~~~~-~~~pdiaViTNi~~dHLd~~~s~e~y~~aK~~l~~----~~~ 224 (473)
T PRK00141 157 GVPVSAALV-------AQPRIDVLVAELSSFQLHWSP-TLTPDVGVVLNLAEDHIDWHGSMRDYAADKAKVLR----GPV 224 (473)
T ss_pred ChhHHHHHh-------cCCCCCEEEEecCCcccccCc-ccCCCEEEEcCCChhhccccCCHHHHHHHHHHHhh----CCE
Confidence 999874332 134678999999999886554 48999999999999999999999999999999997 368
Q ss_pred EEEeCCChhHHHHHhcC-CccEEEeccCCCceeccccccceEEEecCCeEEEE-EeeccCCCchhHHHHHHHHHHHHHHH
Q 017969 159 GLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGL 236 (363)
Q Consensus 159 ~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~G~h~~~Nal~A~~~a~~~ 236 (363)
+|+|.||+....+.... ..++++|+...+...........+.....+..+.+ ....++++|.||++|+++|+ +++.
T Consensus 225 ~vln~Dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~--a~~~ 302 (473)
T PRK00141 225 AVIGADDEYVVQLTSAADLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAA--AVAR 302 (473)
T ss_pred EEEECCCHHHHHHHhhcCCCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHH--HHHH
Confidence 99999999988776433 23577887532100000000011211111212222 12468899999999999999 8899
Q ss_pred HcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhh
Q 017969 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316 (363)
Q Consensus 237 ~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~ 316 (363)
.+|++.+.++++|++|++++||||++. ..++..+|||+|||||+|++++++.++ ++++|+|++.+.. +++.
T Consensus 303 ~lgi~~~~i~~~l~~~~~~~~R~e~~~-~~~~~~iiDdsyahNp~s~~~~l~~l~--~~~~i~gG~~kdk------d~~~ 373 (473)
T PRK00141 303 SQGVAPEAIARALSSFEVAGHRGQVVA-EHGGVTWIDNSKATNPHAADAALAGHE--SVVWVAGGQLKGA------DIDD 373 (473)
T ss_pred HcCCCHHHHHHHHhhCCCCCCceEEEE-EeCCEEEEEcCCCCCHHHHHHHHHhcC--CEEEEecCccCCC------ChHH
Confidence 999999999999999999888999996 356889999999999999999999995 5789998886643 4677
Q ss_pred hhhhcc-cCcEEEEEcccchHHHHhhCC
Q 017969 317 LIEPLN-HHRCVITVCALLFLKIVIQFP 343 (363)
Q Consensus 317 l~~~l~-~~~~vi~~G~~~~~~~~~~~~ 343 (363)
+.+.+. ..+.++++|+.. ..+.+++.
T Consensus 374 ~~~~l~~~~~~~~~~~~~r-~~~~~~l~ 400 (473)
T PRK00141 374 LIRTHAPRIKAAVVLGVDR-AEIVAALA 400 (473)
T ss_pred HHHHHHhhccEEEEECCCH-HHHHHHHH
Confidence 877775 578888898764 45555553
No 15
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=9.3e-54 Score=426.92 Aligned_cols=318 Identities=29% Similarity=0.394 Sum_probs=252.1
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCC--CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP--RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~--~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p 81 (363)
++|.+++++|++|++..|++.|+++++++|++++... ++.++|+||||||||||++||+++|+..|.++.+.||+|.|
T Consensus 81 ~Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gnig~~ 160 (480)
T PRK01438 81 LVVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNIGTP 160 (480)
T ss_pred EEEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCccHH
Confidence 5789999999999999999999999999999877652 24579999999999999999999999999999999999999
Q ss_pred hhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEE
Q 017969 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (363)
+..... ...+.|++|+|+|+++++..+. ++|+++|||||++||+++|||+|+|+.+|++|++. ..+.+|+
T Consensus 161 ~~~~~~-------~~~~~~~~V~E~ss~~l~~~~~-i~P~iaVITNI~~DHld~lgt~e~ia~~K~~I~~~--~~~~~v~ 230 (480)
T PRK01438 161 VLDAVR-------DPEGYDVLAVELSSFQLHWSPS-VSPHSAAVLNLAPDHLDWHGSMEAYAAAKARIYEG--TTVACVY 230 (480)
T ss_pred HHHHHh-------cCCCCCEEEEEcChHHhCcCcc-cCCCEEEEecCChhhccccCCHHHHHHHHHHHHhC--CCceEEE
Confidence 875322 2456799999999999876654 79999999999999999999999999999999995 2478999
Q ss_pred eCCChhHHHHHhcC----CccEEEeccCC----Cceeccccc-cceEEEecCCeEEEEE-eeccCCCchhHHHHHHHHHH
Q 017969 162 PFGNQHLNEAIKGH----RFNLAWIGAFP----GVKIDTEAK-TASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAAL 231 (363)
Q Consensus 162 n~dd~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~l~l~G~h~~~Nal~A~~ 231 (363)
|.||+....+.... ..++++|+.+. ++....... ...+.....+..+.+. ...++++|.||++|+++|+
T Consensus 231 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAi- 309 (480)
T PRK01438 231 NVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNIANALAAA- 309 (480)
T ss_pred eCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHHHHHHHHH-
Confidence 99999887765432 34566776421 111110000 0001111001011111 1258899999999999999
Q ss_pred HHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCc
Q 017969 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311 (363)
Q Consensus 232 ~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~ 311 (363)
+++..+|++.+.|+++|++|+++|||||++. ..+++.+|||+|||||+|++++++.++ ++++|+|++.+..
T Consensus 310 -a~~~~lgi~~~~i~~~L~~~~~~~gR~E~i~-~~~~~~iiDDs~ahNp~a~~aaL~~l~--~i~~I~gG~~~~k----- 380 (480)
T PRK01438 310 -ALARSFGVPPAAVRDGLRAFRPDAHRIEHVA-DADGVTWVDDSKATNPHAAAASLAAYP--SVVWIAGGLAKGA----- 380 (480)
T ss_pred -HHHHHcCCCHHHHHHHHHhCCCCCCceEEEE-EECCEEEEecCccCCHHHHHHHHHhCC--CEEEEEecccCCC-----
Confidence 8888999999999999999999999999996 456788999999999999999999993 7899998777653
Q ss_pred cchhhhhhhcc-cCcEEEEEcccchHHHHhhCC
Q 017969 312 NGFEKLIEPLN-HHRCVITVCALLFLKIVIQFP 343 (363)
Q Consensus 312 ~~~~~l~~~l~-~~~~vi~~G~~~~~~~~~~~~ 343 (363)
++..+.+.+. .++.+|++|+.. ..+.+.+.
T Consensus 381 -d~~~~~~~l~~~~~~vi~~g~~~-~~~~~~l~ 411 (480)
T PRK01438 381 -DFDDLVRRAAGRLRGVVLIGADR-AEIAEALA 411 (480)
T ss_pred -CHHHHHHHHHhhceEEEEECCCH-HHHHHHHH
Confidence 4677888775 489999999885 56666553
No 16
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.7e-52 Score=414.76 Aligned_cols=319 Identities=26% Similarity=0.431 Sum_probs=256.7
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~ 83 (363)
++|.++++++++|++.+|+++|++++++++.+++.. + .++|+||||||||||++||+++|+..|.++.+.||+|.|+.
T Consensus 71 ~vv~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~ig~~~~ 148 (450)
T PRK14106 71 LVVVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYPLI 148 (450)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcccHHHH
Confidence 578899999999999999999999999999988876 3 78999999999999999999999999998999999999987
Q ss_pred hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017969 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~ 163 (363)
..... ..+.+++|+|+|++++.... .++|+++|||||+.||+++|||+|+|+.+|+++++..++.+.+++|.
T Consensus 149 ~~~~~-------~~~~~~~v~E~~~~~~~~~~-~~~P~i~VITnI~~dHl~~~gt~e~ia~~K~~i~~~~~~~~~~vln~ 220 (450)
T PRK14106 149 DAVEE-------YGEDDIIVAEVSSFQLETIK-EFKPKVGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVLNY 220 (450)
T ss_pred HHHhc-------CCCCCEEEEEcChhhhcccc-ccCCCEEEEecCCcchhcccCCHHHHHHHHHHHHhCCCCCCEEEEeC
Confidence 54221 23578999999987665443 38999999999999999999999999999999999888889999999
Q ss_pred CChhHHHHHhcCCccEEEeccCCCceeccccccceEEEecCCeEEE-EEeeccCCCchhHHHHHHHHHHHHHHHHcCCCH
Q 017969 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (363)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~ 242 (363)
|++....+......++++|+.+.............+.+...+.... .....++++|.||++|+++|+ +++..+|+++
T Consensus 221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAi--a~~~~lgi~~ 298 (450)
T PRK14106 221 DDPRTRSLAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAAT--AAAYLLGISP 298 (450)
T ss_pred CcHHHHHHHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHH--HHHHHcCCCH
Confidence 9998877776666678888854211100000011222222221111 112368999999999999999 8899999999
Q ss_pred HHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhhcc
Q 017969 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322 (363)
Q Consensus 243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~ 322 (363)
++++++|++|+++|||||++. ..++..+|+|+|||||+|++++++.++. ++++|+|+|.+. .+++++.+.+.
T Consensus 299 ~~i~~~L~~~~~~~gR~e~i~-~~~~~~vi~D~~ahNP~s~~~~l~~l~~-~~i~v~g~~~~~------k~~~~~~~~l~ 370 (450)
T PRK14106 299 DVIANTLKTFKGVEHRIEFVA-EINGVKFINDSKGTNPDAAIKALEAYET-PIVLIAGGYDKG------SDFDEFAKAFK 370 (450)
T ss_pred HHHHHHHHhCCCCCcceEEEe-eECCEEEEeCCCccCHHHHHHHHHhCCC-CeEEEeCCcCCC------CCHHHHHHHHH
Confidence 999999999999999999996 3467889999889999999999999964 678899877542 35677777765
Q ss_pred -cCcEEEEEcccchHHHHhhCC
Q 017969 323 -HHRCVITVCALLFLKIVIQFP 343 (363)
Q Consensus 323 -~~~~vi~~G~~~~~~~~~~~~ 343 (363)
.++.++++|+.. ..+.+.+.
T Consensus 371 ~~~~~vi~~g~~~-~~l~~~~~ 391 (450)
T PRK14106 371 EKVKKLILLGETA-QEIAEAAR 391 (450)
T ss_pred hhCCEEEEEcCCH-HHHHHHHh
Confidence 478999999875 56666553
No 17
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=100.00 E-value=1.1e-52 Score=415.44 Aligned_cols=310 Identities=21% Similarity=0.258 Sum_probs=239.8
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCe-----Eeeccc
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-----FVGGNL 78 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~-----~~~gni 78 (363)
++|+||+++++||++++|+++|+|+++++|++++...+..++|+||||||||||++||+++|+..|.++ ++.||+
T Consensus 63 ~vV~SpgI~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~gn~ 142 (448)
T TIGR01081 63 LVVIGNAMKRGNPCVEAVLNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGNF 142 (448)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCcccccC
Confidence 689999999999999999999999999999988753123349999999999999999999999999876 367899
Q ss_pred chhhhhhhhhcccCCCCCCCCcEEEEEeCccccccc---Cc--cccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccC
Q 017969 79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP---NK--YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM 153 (363)
Q Consensus 79 g~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~---~~--~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~ 153 (363)
|.|.. . .+.|++|+|+|++++... .. .++|+++|||||++||+|+|+|+|+|+.+|.+|++.+
T Consensus 143 G~~~~---~---------~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~t~e~~~~~K~~i~~~~ 210 (448)
T TIGR01081 143 GVSAR---L---------GESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVRTV 210 (448)
T ss_pred ccccc---c---------CCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccCCHHHHHHHHHHHHHhC
Confidence 98864 1 135899999999876642 22 2799999999999999999999999999999999987
Q ss_pred CCCcEEEEeCCChhHHHHHh-cCCccEEEeccCCCceecc-ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHH
Q 017969 154 VNTKLGLLPFGNQHLNEAIK-GHRFNLAWIGAFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231 (363)
Q Consensus 154 ~~~~~~v~n~dd~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~ 231 (363)
++++.+|+|.||+.+..+.. ....++.+|+...++.... ......+.+...+.. ...+.++++|.||++|+++|+
T Consensus 211 ~~~~~~i~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~G~hn~~Na~~A~- 287 (448)
T TIGR01081 211 PGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQGEWQAEKITADGSHFDVLLDGEK--VGEVKWSLVGRHNMHNALMAI- 287 (448)
T ss_pred CCCCEEEEeCCCHHHHHHHHhccCCCeEEECCCCCEEEEEEecCCcEEEEEECCce--eEEEEecCCcHHHHHHHHHHH-
Confidence 77789999999998876543 2223455665332221110 011112222212211 112367899999999999999
Q ss_pred HHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccC----CcEEEEEcCCCCCCC
Q 017969 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG----HKCVILLGGQAKVLN 307 (363)
Q Consensus 232 ~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~----~~~i~IlG~~~~~g~ 307 (363)
+++..+|++.+.++++|++|+++|||||++. ..+++.+|+|+ ||||+|++++++.++. +|+++|+|+..+..+
T Consensus 288 -a~~~~lgi~~~~i~~~L~~~~~~~~R~e~~~-~~~g~~ii~D~-ahNp~s~~~~l~~l~~~~~~~~ii~I~g~~~~~~~ 364 (448)
T TIGR01081 288 -AAARHVGVAIEDACEALGSFVNAKRRLELKG-EANGITVYDDF-AHHPTAIEATLQGLRQKVGGARILAVLEPRSNTMK 364 (448)
T ss_pred -HHHHHcCCCHHHHHHHHHhCCCCCcceEEEE-ecCCeEEEEeC-CCCHHHHHHHHHHHHHhcCCCeEEEEECCCcchhh
Confidence 8899999999999999999999999999996 35678999998 9999999999998852 367899997654211
Q ss_pred CCCccchhhhhhhcccCcEEEEEccc
Q 017969 308 GQESNGFEKLIEPLNHHRCVITVCAL 333 (363)
Q Consensus 308 ~~~~~~~~~l~~~l~~~~~vi~~G~~ 333 (363)
. +.++.++...++.+|.++++|..
T Consensus 365 l--g~~~~~l~~~~~~~d~vi~~~~~ 388 (448)
T TIGR01081 365 L--GVHKDDLAPSLGRADQVFLYQPG 388 (448)
T ss_pred h--hhHHHHHHHHHHhCCEEEEcCCC
Confidence 1 12344555555668999999865
No 18
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=2e-53 Score=420.73 Aligned_cols=283 Identities=20% Similarity=0.275 Sum_probs=226.6
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc----cchhhhhhhhhcccCCCCCCCCcEEEEEeCc---cccccc
Q 017969 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSS---YQMEIP 114 (363)
Q Consensus 42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn----ig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~---~~l~~~ 114 (363)
+.++|+||||||||||++||+++|+..|.++.+.|| +|.|.+.... .++++++|+|+|+ ++++..
T Consensus 99 ~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~~t~gn~n~~~G~~~~~~~~--------~~~~~~~V~E~g~~~~gei~~~ 170 (453)
T PRK10773 99 PARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNLNNDIGVPLTLLRL--------TPEHDYAVIELGANHQGEIAYT 170 (453)
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHHhcCcccccCccccCCcccccHHhcC--------CCCCcEEEEEcCCCCcchhHHh
Confidence 468999999999999999999999999988888887 5777654332 4578999999995 344444
Q ss_pred CccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCc-cEEEeccCC----Cce
Q 017969 115 NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF-NLAWIGAFP----GVK 189 (363)
Q Consensus 115 ~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~-~~~~~~~~~----~~~ 189 (363)
...++|+++|||||++||+|+|||+|+|+++|.+|++.+++++.+|+|.||+....+...... ++++||... ++.
T Consensus 171 ~~~~~p~iaViTNI~~dHld~~gs~e~~~~aK~~l~~~~~~~g~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ 250 (453)
T PRK10773 171 VSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADSNDWLNWQSVIGSKTVWRFSPNAANSVDFT 250 (453)
T ss_pred cCccCCCEEEEeCCCHHHHhhcCCHHHHHHHHHHHHcccCCCCEEEEECCcHhHHHHHHHhcCCcEEEEeCCCCCcCcEE
Confidence 556899999999999999999999999999999999998888999999999987766543322 466787532 221
Q ss_pred ec---cccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeec
Q 017969 190 ID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266 (363)
Q Consensus 190 ~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~ 266 (363)
.. ....+..+.+...+... .+.++++|+||++|+++|+ +++..+|+++++|+++|++|++++||||.+. ..
T Consensus 251 ~~~i~~~~~~~~f~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~~~~~~gR~e~v~-~~ 324 (453)
T PRK10773 251 ATNIHVTSHGTEFTLHTPTGSV---DVLLPLPGRHNIANALAAA--ALAMSVGATLDAVKAGLANLKAVPGRLFPIQ-LA 324 (453)
T ss_pred EEEEEEeCCeeEEEEEecCceE---EEEecCCcHhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCceeEEE-CC
Confidence 11 11112223332211111 2578999999999999999 8999999999999999999999999999996 35
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhccc--CCcEEEEEcCCCCCCCCCCccchhhhhhhcc--cCcEEEEEcccchHHHHh
Q 017969 267 QGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITVCALLFLKIVI 340 (363)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~--~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~--~~~~vi~~G~~~~~~~~~ 340 (363)
++.++|||+|||||+|++++++.++ ++|+++|+|+|.++|+.++ ..|+++++.+. .+|.++++|+.+ +.+.+
T Consensus 325 ~g~~iIDDsYn~nP~s~~aaL~~l~~~~~r~i~VlG~m~elG~~~~-~~h~~~~~~~~~~~~d~v~~~G~~~-~~~~~ 400 (453)
T PRK10773 325 EGQLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMAELGAESE-ACHRQVGEAAKAAGIDKVLSVGKLS-HAISE 400 (453)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEECChhhcchHHH-HHHHHHHHHHHHcCCCEEEEEChhH-HHHHH
Confidence 6789999999999999999999885 3567999999999999874 57899999886 479999999876 45554
No 19
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.1e-52 Score=416.35 Aligned_cols=320 Identities=27% Similarity=0.382 Sum_probs=251.6
Q ss_pred eeeeccccCCCc----HHHHHHHhcCCceeeHHHHHHhhCC------CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeE
Q 017969 4 LWLFLLEFQLKA----TGLACLLQSGKRVMSELDFAAQVIP------RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 4 ~~~~~~~~~~~~----p~l~~a~~~~~~~l~~~~~~~~~~~------~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
++|+||+++++| |++++|++.++|++++++++++.+. ...++|+||||||||||++||+++|+..|.+++
T Consensus 72 ~vv~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~ 151 (498)
T PRK02006 72 LVALSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVA 151 (498)
T ss_pred EEEECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEE
Confidence 689999999998 9999999999999999999877541 134899999999999999999999999999999
Q ss_pred eecccchhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccC
Q 017969 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM 153 (363)
Q Consensus 74 ~~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~ 153 (363)
+.||+|.+.......... .....+++|+|+|+++++.... ++|+++|||||++||+|+|+|+|+|+.+|.++++
T Consensus 152 ~~Gni~~~~~~~~~~~~~---~~~~~~~~V~E~ss~~l~~~~~-~~p~iaviTNI~~DHld~~gs~e~y~~aK~~i~~-- 225 (498)
T PRK02006 152 VAGNISPAALDKLMEAID---AGALPDVWVLELSSFQLETTHT-LAPDAATVLNITQDHLDWHGSMAAYAAAKARIFG-- 225 (498)
T ss_pred EECCCCHHHHHHHHHhhc---cCCCCcEEEEEccHHHhCcccc-cCCCEEEEcCCChhhhcccCCHHHHHHHHHHHcC--
Confidence 999999775443211110 0112488999999998866554 8999999999999999999999999999999998
Q ss_pred CCCcEEEEeCCChhHHHHHhcC-CccEEEeccCC-----CceeccccccceEEEecCCeE-------------------E
Q 017969 154 VNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFP-----GVKIDTEAKTASFEVPAVGVV-------------------S 208 (363)
Q Consensus 154 ~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-------------------~ 208 (363)
+++.+|+|.|||.+..+.... ..++++||... ++...... ...+.+...+.. +
T Consensus 226 -~~~~~Vln~dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (498)
T PRK02006 226 -PRTVRVLNRDDARVMAMAPPGGAADAVTFGLDEPAADGDYGLLRDN-GMAWLVEAEDRDAADPAPSRRRKKDAAPPPDI 303 (498)
T ss_pred -CCCEEEEeCCCHHHHHHhhccCCccEEEEeCCCccccccceEEecC-CeEEEEecCccccccccccccccccccccccc
Confidence 478999999999988776432 23577887532 11111000 001111100000 0
Q ss_pred ---E-EEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHH
Q 017969 209 ---Q-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATC 284 (363)
Q Consensus 209 ---~-~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~ 284 (363)
. .....++++|.||++|+++|+ +++..+|+++++|+++|++|++++||||++. ..+++.+|||+|+|||+|+.
T Consensus 304 ~~~~~~~~~~l~l~G~hn~~NalaAi--a~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~-~~~g~~~idDs~~tn~~s~~ 380 (498)
T PRK02006 304 RLKRLMPADALRIRGLHNAANALAAL--ALARAIGLPAAPLLHGLREYRGEPHRVELVA-TIDGVDYYDDSKGTNVGATV 380 (498)
T ss_pred chhceeeHhhcCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCceEEEE-EECCEEEEEcCCCCCHHHHH
Confidence 0 111368999999999999999 8999999999999999999999999999996 45789999999999999999
Q ss_pred HHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhhcc-cCcEEEEEcccchHHHHhhC
Q 017969 285 TGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITVCALLFLKIVIQF 342 (363)
Q Consensus 285 ~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~-~~~~vi~~G~~~~~~~~~~~ 342 (363)
+|++.++ +|+++|+|+|.+.++ ++++.+.+. .++.||++|+.. ..+.+.+
T Consensus 381 ~al~~~~-~~ii~IlGg~~~~~~------~~~~~~~l~~~~~~vi~~G~~~-~~i~~~~ 431 (498)
T PRK02006 381 AALDGLA-QRVVLIAGGDGKGQD------FSPLAAPVARHARAVVLIGRDA-PAIRAAL 431 (498)
T ss_pred HHHHhCC-CCEEEEEcCCCCCCC------HHHHHHHHHHhCCEEEEEcCCH-HHHHHHH
Confidence 9999985 578999999987543 566766665 589999999886 5676665
No 20
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=100.00 E-value=4.1e-52 Score=411.34 Aligned_cols=316 Identities=18% Similarity=0.268 Sum_probs=250.8
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCC--CeEeecccchh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI--EAFVGGNLGNP 81 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~--~~~~~gnig~p 81 (363)
++|.||+++++||++++|+++++|+++++|++++.. ++.++|+||||||||||++||+++|+..|. ++..+||+|.|
T Consensus 61 ~vV~spgi~~~~p~~~~a~~~~i~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~~~ 139 (448)
T TIGR01082 61 VVVVSAAIKDDNPEIVEAKERGIPVIRRAEMLAELM-RFRHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVKEA 139 (448)
T ss_pred EEEECCCCCCCCHHHHHHHHcCCceEeHHHHHHHHH-hcCcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECcccccC
Confidence 689999999999999999999999999999998876 345899999999999999999999999997 56678898887
Q ss_pred hhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhc-cCCCHHHHHHHHHHhcccCCCCcEEE
Q 017969 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE-RHKTMKNYALTKCHLFSHMVNTKLGL 160 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~-~~gt~e~~~~~K~~i~~~~~~~~~~v 160 (363)
...... ...|++|+|+|++++.. ..++|+++|||||++||+| +|+|+|+|+++|.++++.+++++.+|
T Consensus 140 ~~~~~~---------~~~~~~V~E~s~~q~~~--~~~~p~vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~~~~~V 208 (448)
T TIGR01082 140 GTNARL---------GSGEYLVAEADESDASF--LHLQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGLAV 208 (448)
T ss_pred Cccccc---------CCCCEEEEECCCccchH--hhccCCEEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 754321 23589999999998765 3489999999999999999 88899999999999999888889999
Q ss_pred EeCCChhHHHHHhcCCccEEEeccCC---Cceec---cccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHH
Q 017969 161 LPFGNQHLNEAIKGHRFNLAWIGAFP---GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (363)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~ 234 (363)
+|.||+....+......++++|+... ++... .......+.+...+. ......++++|.||++|+++|+ ++
T Consensus 209 ~n~dd~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~G~hn~~N~~aA~--a~ 284 (448)
T TIGR01082 209 ICADDPVLRELVPKATEQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGK--LYLEFTLNLPGRHNVLNALAAI--AV 284 (448)
T ss_pred EECCCHHHHHHHhhcCCCEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEecCccHhHHHHHHHHH--HH
Confidence 99999998877654445677887541 12111 011111222221111 1123467899999999999999 88
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcC--CCCCCCC
Q 017969 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG--QAKVLNG 308 (363)
Q Consensus 235 ~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~--~~~~g~~ 308 (363)
+..+|++++.|+++|++|++++||||++. ..+++++|||+ ||||.++.++++.++ ++|+++|+|+ +.+..
T Consensus 285 ~~~lgi~~~~i~~~l~~f~~~~~R~e~~~-~~~gv~~i~D~-ahn~~~~~a~~~al~~~~~~~~ii~i~g~~~~~r~k-- 360 (448)
T TIGR01082 285 ALELGIDFEAILRALANFQGVKRRFEILG-EFGGVLLIDDY-AHHPTEIKATLKAARQGYPDKRIVVVFQPHRYSRTR-- 360 (448)
T ss_pred HHHcCCCHHHHHHHHHhCCCCCccceEEE-EeCCeEEEEcC-CCCHHHHHHHHHHHHHhcCCCeEEEEECCCCCccHH--
Confidence 99999999999999999999999999996 46789999995 999999999888763 3478899985 44421
Q ss_pred CCccchhhhhhhcccCcEEEEE-----------cccchHHHHhhCC
Q 017969 309 QESNGFEKLIEPLNHHRCVITV-----------CALLFLKIVIQFP 343 (363)
Q Consensus 309 ~~~~~~~~l~~~l~~~~~vi~~-----------G~~~~~~~~~~~~ 343 (363)
.++.++.+.++.+|.++++ |... ..+.+.+.
T Consensus 361 ---~~~~~~~~~l~~~d~v~l~~~~~~~~~~~~g~~~-~~i~~~~~ 402 (448)
T TIGR01082 361 ---DLFDDFAKVLSDADELILLDIYAAGEEPINGIDG-KSLARKIT 402 (448)
T ss_pred ---HHHHHHHHHHHhCCEEEEecccCCCCCCCCCCCH-HHHHHHHh
Confidence 2356788877778999988 4443 56677664
No 21
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=1.5e-51 Score=408.68 Aligned_cols=305 Identities=19% Similarity=0.255 Sum_probs=238.7
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCC--eEeecccchh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNP 81 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~--~~~~gnig~p 81 (363)
++|.||+++++||++++|+++|+|+++++|++++.. ++.++|+||||||||||++||+++|+.+|.+ +..+||++.+
T Consensus 69 ~vv~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~-~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~~~ 147 (461)
T PRK00421 69 VVVYSSAIPDDNPELVAARELGIPVVRRAEMLAELM-RFRTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILNAA 147 (461)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHH-ccCcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECceeccC
Confidence 689999999999999999999999999999998876 2458999999999999999999999999964 4566765443
Q ss_pred hhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEE
Q 017969 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (363)
-.... ..+.|++|+|+|+++... ..++|+++|||||++||+|+|||+|+|+++|.+++..+++++.+|+
T Consensus 148 ~~~~~---------~~~~~~~V~E~ss~q~~~--~~~~p~vaViTNI~~DHld~~gt~e~y~~ak~k~~~~~~~~~~~V~ 216 (461)
T PRK00421 148 GTNAR---------LGNSDYFVAEADESDRSF--LKLHPDIAIVTNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGALVA 216 (461)
T ss_pred Ccccc---------cCCCCEEEEECCCccchH--hhcCCCEEEEccCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 22111 235689999999988643 2379999999999999999999999999999999998888899999
Q ss_pred eCCChhHHHHHhcCCccEEEeccCC--Cceecc---ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHH
Q 017969 162 PFGNQHLNEAIKGHRFNLAWIGAFP--GVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236 (363)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~ 236 (363)
|.||+....+......++++|+... ++.... ......+.+...+. .+....++++|.||++|+++|+ +++.
T Consensus 217 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~l~l~G~h~~~N~~aA~--a~~~ 292 (461)
T PRK00421 217 CGDDPELRELLPRVSRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGE--VLGDFTLPLPGRHNVLNALAAI--AVAL 292 (461)
T ss_pred ECCCHHHHHHHHhcCCCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCc--eEEEEEecCCcHHHHHHHHHHH--HHHH
Confidence 9999988887665556778887532 222110 11112233222211 1223568899999999999999 8899
Q ss_pred HcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEc--CCCCCCCCCC
Q 017969 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLG--GQAKVLNGQE 310 (363)
Q Consensus 237 ~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG--~~~~~g~~~~ 310 (363)
.+|+++++|+++|++|+++|||||++. ..+++.+|+|+ ||||+++.++++.++ ++|+++|+| ++.+..+
T Consensus 293 ~lgv~~~~i~~~l~~f~~~~~R~e~~~-~~~g~~~i~D~-aHnp~~~~a~~~al~~~~~~~~i~~v~gp~~~~r~kd--- 367 (461)
T PRK00421 293 ELGIDDEAIREALATFKGVKRRFEEKG-EVGGVVLIDDY-AHHPTEIKATLKAARQGYPDKRIVAVFQPHRYSRTRD--- 367 (461)
T ss_pred HcCCCHHHHHHHHHhCCCCCcccEEEE-ecCCcEEEEeC-CCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCccHHH---
Confidence 999999999999999999999999996 45688999995 999999999888774 267889998 3333211
Q ss_pred ccchhhhhhhcccCcEEEEEc
Q 017969 311 SNGFEKLIEPLNHHRCVITVC 331 (363)
Q Consensus 311 ~~~~~~l~~~l~~~~~vi~~G 331 (363)
.+..+++.++.+|.++++.
T Consensus 368 --~~~~~~~~l~~~d~vi~~~ 386 (461)
T PRK00421 368 --LLDEFAEALSDADEVILLD 386 (461)
T ss_pred --HHHHHHHHHHHCCEEEEcC
Confidence 1334777675688888873
No 22
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.9e-52 Score=405.08 Aligned_cols=289 Identities=24% Similarity=0.301 Sum_probs=240.9
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc----cchhhhhhhhhcccCCCCCCCCcEEEEEeCc---ccccc
Q 017969 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSS---YQMEI 113 (363)
Q Consensus 41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn----ig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~---~~l~~ 113 (363)
.+.++|+||||+|||||++|++++|+..|.+..+.|| +|.|++.... ..++|++|+|+|. |++..
T Consensus 101 ~~~kvIaITGS~GKTTTKe~la~iL~~~~~v~~t~gn~Nn~iGlPltll~~--------~~~~e~~VlEmG~~~~GeI~~ 172 (451)
T COG0770 101 FNAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNEIGLPLTLLRL--------PADTEYAVLEMGMNHPGEIAE 172 (451)
T ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHhhcCeEecCCCccCccccchhHHHhC--------CCcccEEEEEcCCCCCCcHHH
Confidence 3788999999999999999999999999988888888 6889987765 5668999999995 47777
Q ss_pred cCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcC-CccEEEeccC--CCcee
Q 017969 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAF--PGVKI 190 (363)
Q Consensus 114 ~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~--~~~~~ 190 (363)
+..+.+|+++|||||+.+|+++|||.|.++++|.+|+.++++++++|+|.|++......... ..++++||.. .++..
T Consensus 173 l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~~~~~~~~v~~fg~~~~~d~~~ 252 (451)
T COG0770 173 LSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWAAKIGNAKVLSFGLNNGGDFRA 252 (451)
T ss_pred HhcccCCCEEEEcChhHHHHHhcCCHHHHHHHHHHHHhccCCCcEEEEECccHHHHHHHhhcCCCcEEEEcCCCCCceee
Confidence 88889999999999999999999999999999999999999999999999999876666543 4678889864 12221
Q ss_pred ---ccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecC
Q 017969 191 ---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267 (363)
Q Consensus 191 ---~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~ 267 (363)
..+..+..|.+...+.+. .+.++++|+||+.|+++|+ ++|+.+|++.++|+++|+.+++++||+|.+. ..+
T Consensus 253 ~~i~~~~~~~~f~~~~~~~~~---~~~l~~~G~hn~~NalaA~--a~a~~lG~~~e~i~~~L~~~~~~~gR~~~~~-~~~ 326 (451)
T COG0770 253 TNIHLDEEGSSFTLDIEGGEA---EFELPLPGRHNVTNALAAA--ALALELGLDLEEIAAGLKELKPVKGRLEVIL-LAN 326 (451)
T ss_pred EEEEEcCCceEEEEEecCceE---EEEecCCcHhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCCccceeEe-cCC
Confidence 112222334333333222 2589999999999999999 8999999999999999999999999999553 578
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchhhhhhhcc--cCcEEEEEcccchHHHHhhC
Q 017969 268 GVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITVCALLFLKIVIQF 342 (363)
Q Consensus 268 ~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~--~~~~vi~~G~~~~~~~~~~~ 342 (363)
|.++|||+||.||+||+++++.+. +++.|+|+|+|.|+|+.++ +.|+++++.+. .+|.++++|+.+ +.+.+.+
T Consensus 327 g~~iIdD~YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ELG~~s~-~~H~~v~~~~~~~~~d~v~~~G~~~-~~i~~~~ 404 (451)
T COG0770 327 GKTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGDMLELGEESE-ELHEEVGEYAVEAGIDLVFLVGELS-KAIAEAL 404 (451)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHhhCccCCcEEEeCChhhhCccHH-HHHHHHHHHHHhcCceEEEEEccch-HHHHHhc
Confidence 899999999999999999998763 4444999999999998774 57999999875 379999999976 7888887
Q ss_pred CCC
Q 017969 343 PKK 345 (363)
Q Consensus 343 ~~~ 345 (363)
+.+
T Consensus 405 ~~~ 407 (451)
T COG0770 405 GNK 407 (451)
T ss_pred CCC
Confidence 643
No 23
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=1.1e-51 Score=404.82 Aligned_cols=284 Identities=23% Similarity=0.271 Sum_probs=226.9
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc----cchhhhhhhhhcccCCCCCCCCcEEEEEeC-ccccc--cc
Q 017969 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQME--IP 114 (363)
Q Consensus 42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn----ig~p~~~~~~~~~~~~~~~~~~d~~VlE~g-~~~l~--~~ 114 (363)
+.++|+||||||||||++||+++|+..|..+++.|| +|.|.+... ...++|++|+|+| +++.+ ..
T Consensus 73 ~~~vI~VTGTnGKTTt~~ll~~iL~~~g~~~~t~gn~n~~ig~p~~~l~--------~~~~~~~~VlE~g~s~~g~~~~~ 144 (417)
T TIGR01143 73 SGKVIGITGSSGKTTTKEMLAAILSHKYKVFATPGNFNNEIGLPLTLLR--------APGDHDYAVLEMGASHPGEIAYL 144 (417)
T ss_pred CCCEEEEcCCCchhHHHHHHHHHHhccCcEecCCCcCCCccchhHHHhc--------CCCCCeEEEEEeCCCCCCcHHHH
Confidence 568999999999999999999999999987777787 677776432 2567899999998 44433 23
Q ss_pred CccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCC-ccEEEeccCC-Ccee--
Q 017969 115 NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-FNLAWIGAFP-GVKI-- 190 (363)
Q Consensus 115 ~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~-~~~~~~~~~~-~~~~-- 190 (363)
...++|+++|||||++||+|+|||+|+|+++|.++++.+++++.+|+|.|||....+..... .++++||... ++..
T Consensus 145 ~~~~~p~vaviTNi~~dHld~~gs~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (417)
T TIGR01143 145 AEIAKPDIAVITNIGPAHLEGFGSLEGIAEAKGEILQGLKENGIAVINADDPAFAKFAKRLPNKAILSFGFEGGDFSAAD 224 (417)
T ss_pred hCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHHHHHhccCCcEEEECCCCCcEEEEE
Confidence 33489999999999999999999999999999999998888899999999998877765433 4577887542 2211
Q ss_pred -cccccc-ceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCC
Q 017969 191 -DTEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG 268 (363)
Q Consensus 191 -~~~~~~-~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~ 268 (363)
.....+ ..+.+...+... .+.++++|.||++|+++|+ +++..+|+++++|+++|++|+++|||||+. ..++
T Consensus 225 i~~~~~~~~~~~~~~~~~~~---~~~~~l~G~hn~~N~laAi--a~~~~lGi~~~~i~~~l~~~~~~~gR~e~~--~~~~ 297 (417)
T TIGR01143 225 ISYSALGSTGFTLVAPGGEF---EVSLPLLGRHNVMNALAAA--ALALELGIPLEEIAEGLAELKLVKGRFEIQ--TKNG 297 (417)
T ss_pred EEEcCCCCEEEEEEeCCceE---EEEccCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCceeEE--cCCC
Confidence 011111 223332222111 2468999999999999999 899999999999999999999999999943 4678
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC--CcEEEEEcCCCCCCCCCCccchhhhhhhcc-c-CcEEEEEcccchHHHHhhC
Q 017969 269 VTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAKVLNGQESNGFEKLIEPLN-H-HRCVITVCALLFLKIVIQF 342 (363)
Q Consensus 269 ~~iidD~~a~np~s~~~al~~~~~--~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~-~-~~~vi~~G~~~~~~~~~~~ 342 (363)
+++|||+|||||+|++++|+.++. +|+++|+|+|.|+|+++. ..|.++++.+. . +|.+|++|+.. ..+.+.+
T Consensus 298 ~~vidDsya~np~s~~~al~~l~~~~~r~i~VlG~~~e~G~~~~-~~~~~l~~~~~~~~~d~vi~~g~~~-~~~~~~~ 373 (417)
T TIGR01143 298 LTLIDDTYNANPDSMRAALDALARFPGKKILVLGDMAELGEYSE-ELHAEVGRYANSLGIDLVFLVGEEA-AVIYDSL 373 (417)
T ss_pred cEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEEcCchhcChHHH-HHHHHHHHHHHHcCCCEEEEECHHH-HHHHHhc
Confidence 999999999999999999999862 578999999999998874 46888999885 3 59999999997 5666655
No 24
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.4e-50 Score=381.63 Aligned_cols=308 Identities=20% Similarity=0.264 Sum_probs=251.4
Q ss_pred eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeE--eecccch
Q 017969 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNLGN 80 (363)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~--~~gnig~ 80 (363)
+.+|+|+|++.+||++++|+++++|++++.|++.+.+ +....|+|+||+||||||+||+++|.++|.... .+|.++.
T Consensus 68 ~~VV~s~Ai~~~NpEi~~A~e~~ipi~~r~e~Laelm-~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~~~~ 146 (459)
T COG0773 68 DVVVVSNAIKEDNPEIVAALERGIPVISRAEMLAELM-RFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKN 146 (459)
T ss_pred ceEEEecccCCCCHHHHHHHHcCCCeEcHHHHHHHHH-hCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECccccc
Confidence 4589999999999999999999999999999999998 467899999999999999999999999987652 3443222
Q ss_pred hhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEE
Q 017969 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160 (363)
Q Consensus 81 p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v 160 (363)
.-.... ....+++|+|.++++-.++. ++|+++|||||..||+|+|++++++.++...+++.++..|.+|
T Consensus 147 ~g~na~---------~g~~~~fV~EADEsD~sFl~--~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~G~~v 215 (459)
T COG0773 147 FGTNAR---------LGSGDYFVAEADESDSSFLH--YNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFYGRAV 215 (459)
T ss_pred CCcccc---------cCCCceEEEEeccccccccc--CCCCEEEEeCCCcchhhhhCCHHHHHHHHHHHHHhCCccceEE
Confidence 111111 23347899999987644443 7999999999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHhc-CCccEEEeccCC--Cceec---cccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHH
Q 017969 161 LPFGNQHLNEAIKG-HRFNLAWIGAFP--GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (363)
Q Consensus 161 ~n~dd~~~~~~~~~-~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~ 234 (363)
+|.|||.++++... +..++++||.++ ++... .+..+..|.+...+. .+..+.++++|+||+.|+++|+ ++
T Consensus 216 ~~~dd~~l~~l~~~~~~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~--~~~~~~l~~pG~HNvlNAlaai--a~ 291 (459)
T COG0773 216 VCGDDPNLRELLSRGCWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGE--ELGEVKLPLPGRHNVLNALAAI--AV 291 (459)
T ss_pred EECCCHHHHHHHhcccCCcEEeecCCCcCcEEEEEeEEeccccEEEEEEcCc--eeEEEEEcCCchhhHHHHHHHH--HH
Confidence 99999999997764 667789999875 44332 233334455555554 3345789999999999999999 89
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc-----CCcEEEEEcCCCCCCCCC
Q 017969 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-----GHKCVILLGGQAKVLNGQ 309 (363)
Q Consensus 235 ~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-----~~~~i~IlG~~~~~g~~~ 309 (363)
|..+|++.++|+++|++|+++.+|||+.+ +.+++++||| |+|+|..+++.|++.+ ++|+++|+-...-. ..
T Consensus 292 a~~~Gi~~~~i~~aL~~F~GvkRRfe~~g-~~~~~~viDD-YaHHPtEI~aTL~aaR~~~~~~~rIvaifQPHryS--Rt 367 (459)
T COG0773 292 ARELGIDPEAIAEALASFQGVKRRFELKG-EVNGVTVIDD-YAHHPTEIKATLAAARQKVPGGKRIVAVFQPHRYS--RT 367 (459)
T ss_pred HHHcCCCHHHHHHHHHhCCCcceeeEEee-eECCEEEEec-CCCCHHHHHHHHHHHHHhcCCCceEEEEECCCchH--hH
Confidence 99999999999999999999999999997 6889999999 5999999999888763 26889998743211 00
Q ss_pred CccchhhhhhhcccCcEEEEEc
Q 017969 310 ESNGFEKLIEPLNHHRCVITVC 331 (363)
Q Consensus 310 ~~~~~~~l~~~l~~~~~vi~~G 331 (363)
...++++++.++.+|.|+++.
T Consensus 368 -~~~~~dF~~~l~~AD~v~l~~ 388 (459)
T COG0773 368 -RDLLDDFAKALSDADEVILLD 388 (459)
T ss_pred -HHHHHHHHHHHhcCCEEEEec
Confidence 124677777788899999994
No 25
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.4e-49 Score=385.59 Aligned_cols=285 Identities=25% Similarity=0.349 Sum_probs=229.7
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~ 83 (363)
++|+||+++++||++++|++ +++++|++++.. .++|+||||||||||++||+++|+.+|.. .+||+|.|++
T Consensus 57 ~vv~sp~i~~~~~~~~~a~~----i~~~~e~~~~~~---~~~i~ITGT~GKTTTt~ml~~iL~~~g~~--~~gniG~p~~ 127 (401)
T PRK03815 57 LEIPSPGIPPSHPLIQKAKN----LISEYDYFYDVM---PFSIWISGTNGKTTTTQMTTHLLEDFGAV--SGGNIGTPLA 127 (401)
T ss_pred EEEECCCCCCCCHHHHHHHH----HhhHHHHHHHhc---CCEEEEECCCcHHHHHHHHHHHHHHCCCc--EEEEecHhHH
Confidence 57999999999999999998 799999988765 25999999999999999999999999843 5899999987
Q ss_pred hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017969 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~ 163 (363)
. . ..+.|++|+|+|+++++.... ++|+++|||||++||+|+|+|+|+|+++|.+|++++++++.+|+|.
T Consensus 128 ~--~--------~~~~~~~V~E~ss~~~~~~~~-~~p~iavitNi~~dHld~~~s~e~~~~~k~~i~~~~~~~~~~v~n~ 196 (401)
T PRK03815 128 E--L--------DKNAKIWVLETSSFTLHYTNK-AKPNIYLLLPITPDHLSWHGSFENYVKAKLKPLKRMNEGDVAILPK 196 (401)
T ss_pred h--c--------CCCCCEEEEECChHHhhCCcc-CCCcEEEEcCCcccchhhcCCHHHHHHHHHHHHhCCCcCCEEEEec
Confidence 5 2 235589999999988665554 8999999999999999999999999999999999999899999999
Q ss_pred CChhHHHHHhcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHH
Q 017969 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE 243 (363)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~ 243 (363)
||+... ...++++||...+.. ..+.+.. ..+.+.+.| ++|+++|+ +++..+|+ +
T Consensus 197 dd~~~~-----~~~~~~~fg~~~~~~-------~~~~~~~---------~~~~~~~~~-~~NalaA~--a~a~~~G~--~ 250 (401)
T PRK03815 197 KFKNTP-----TKAQKIFYEDEEDLA-------EKFGIDS---------EKINFKGPF-LLDALLAL--AVYKILFD--E 250 (401)
T ss_pred cccccc-----cCCcEEEEecCCccc-------cceeEeh---------HhcCCchHH-HHHHHHHH--HHHHHhCc--H
Confidence 998631 124566776321110 0111111 123344554 99999999 89999994 5
Q ss_pred HHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhhccc
Q 017969 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323 (363)
Q Consensus 244 ~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~~ 323 (363)
.+.++|++|++++||||++. ..+|+++|||+||+||+|+.+|++.++++|+++|+|+..+. .+|.++.+.++.
T Consensus 251 ~~~~~L~~f~~~~~R~e~~~-~~~gv~~idDs~~tn~~a~~~al~~~~~~~ii~IlGG~~k~------~~~~~l~~~~~~ 323 (401)
T PRK03815 251 LDYERLNAFKIGKHKLEEFR-DKQGRLWVDDSKATNVDATLQALKRYKDKKIHLILGGDDKG------VDLTPLFEFMKN 323 (401)
T ss_pred HHHHHHHhCCCCCceEEEEE-EECCEEEEECCCCCCHHHHHHHHHhCCCCCEEEEECCCCCC------CCHHHHHHHHHh
Confidence 56678999999999999996 46899999999999999999999999656789999985553 356789888864
Q ss_pred -CcEEEEEcccchHHHHhhC
Q 017969 324 -HRCVITVCALLFLKIVIQF 342 (363)
Q Consensus 324 -~~~vi~~G~~~~~~~~~~~ 342 (363)
...++++|+.. ..+.+.+
T Consensus 324 ~~~~v~~~G~~~-~~~~~~~ 342 (401)
T PRK03815 324 LNIELYAIGSNT-EKIQALA 342 (401)
T ss_pred hCcEEEEECCCH-HHHHHHH
Confidence 33599999986 4555554
No 26
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=4.3e-50 Score=399.36 Aligned_cols=286 Identities=19% Similarity=0.184 Sum_probs=225.3
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc----cchhhhhhhhhcccCCCCCCCCcEEEEEeCc-cccc--cc
Q 017969 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSS-YQME--IP 114 (363)
Q Consensus 42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn----ig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~-~~l~--~~ 114 (363)
+.++|+||||||||||++||+++|+..|.++.+.|| +|.|.+.... ..+.+++|+|+|+ +..+ ..
T Consensus 107 ~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~~n~~iG~p~~l~~~--------~~~~~~~V~E~g~s~~~e~~~~ 178 (479)
T PRK14093 107 EAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVASFNNHWGVPLSLARC--------PADARFAVFEIGMNHAGEIEPL 178 (479)
T ss_pred CCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCccCCCccchhHHHHcC--------CCCCcEEEEEeCCCCCchHHHH
Confidence 568999999999999999999999999988877665 4666653322 3567999999994 4433 33
Q ss_pred CccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCC----ccEEEeccCC--Cc
Q 017969 115 NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR----FNLAWIGAFP--GV 188 (363)
Q Consensus 115 ~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~----~~~~~~~~~~--~~ 188 (363)
...++|+++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+|.|||....+..... .++++||.+. ++
T Consensus 179 ~~~~~PdiaViTNI~~DHLd~~gt~e~~~~aK~~l~~~~~~~g~~VlN~Dd~~~~~l~~~~~~~~~~~vi~~g~~~~~~~ 258 (479)
T PRK14093 179 VKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDRLAASARAAGIARIVSFGADEKADA 258 (479)
T ss_pred hcccCCCEEEEcCCCHHHHhhcCCHHHHHHHHHHHHccCCCCCEEEEeCCcHHHHHHHHHhhhccCCcEEEEeCCCCccE
Confidence 44589999999999999999999999999999999998888899999999998877654321 2577888542 22
Q ss_pred eecc---ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEee
Q 017969 189 KIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265 (363)
Q Consensus 189 ~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~ 265 (363)
.... ......+.+...+... .+.++++|.||++|+++|+ +++..+|+++++|+++|++|+++|||+|.+..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~l~~~~~~~gR~~~~r~~ 333 (479)
T PRK14093 259 RLLDVALHADCSAVHADILGHDV---TYKLGMPGRHIAMNSLAVL--AAAELAGADLALAALALSQVQPAAGRGVRHTLE 333 (479)
T ss_pred EEEEEEEcCCceEEEEEECCceE---EEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCcCCcceEEEee
Confidence 1110 1111223332222112 2578999999999999999 899999999999999999999999999987422
Q ss_pred --cCCEEEEEcCCCCCHHHHHHHHhccc------CCcEEEEEcCCCCCCCCCCccchhhhhhhcc--cCcEEEEEcccch
Q 017969 266 --IQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITVCALLF 335 (363)
Q Consensus 266 --~~~~~iidD~~a~np~s~~~al~~~~------~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~--~~~~vi~~G~~~~ 335 (363)
.++.++|||+|||||+|++++|+.++ ++|+|+|+|+|.++|..+. ..|+++++.+. .+|.|+++|+.+
T Consensus 334 ~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m~elg~~~~-~~h~~~~~~~~~~~~d~v~~~G~~~- 411 (479)
T PRK14093 334 VGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVLGDMLELGPRGP-ELHRGLAEAIRANAIDLVFCCGPLM- 411 (479)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEECChHHcCcHHH-HHHHHHHHHHHHcCCCEEEEEchhH-
Confidence 34589999999999999999999874 2578999999999998874 56899999986 579999999876
Q ss_pred HHHHhhC
Q 017969 336 LKIVIQF 342 (363)
Q Consensus 336 ~~~~~~~ 342 (363)
+.+.+.+
T Consensus 412 ~~~~~~~ 418 (479)
T PRK14093 412 RNLWDAL 418 (479)
T ss_pred HHHHHhh
Confidence 5666654
No 27
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=1.5e-47 Score=402.72 Aligned_cols=301 Identities=15% Similarity=0.178 Sum_probs=233.0
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCC--eEeecccchh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNP 81 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~--~~~~gnig~p 81 (363)
++|+||+++++||++++|+++|+|+++++|++++.. +..++|+||||||||||++||+++|+.+|.+ +..+||+|.|
T Consensus 66 ~vV~SpgI~~~~p~~~~a~~~gi~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~gG~~g~~ 144 (809)
T PRK14573 66 VVVYSSSISKDNVEYLSAKSRGNRLVHRAELLAELM-QEQISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIGGLNQEG 144 (809)
T ss_pred EEEECCCcCCCCHHHHHHHHCCCcEEeHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCccccc
Confidence 689999999999999999999999999999998887 3458999999999999999999999999975 4678888887
Q ss_pred hhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEE
Q 017969 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGL 160 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v 160 (363)
+... ..+.|++|+|+|+++ .... .++|+++|||||++||+|+| +|+|+|+++|..+++.+++++.+|
T Consensus 145 ~~~~----------~~~~d~~V~E~ss~~-~~~~-~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~V 212 (809)
T PRK14573 145 LNGY----------SGSSEYFVAEADESD-GSLK-HYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCF 212 (809)
T ss_pred cccc----------cCCCCEEEEECCCCc-chhh-eeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 7642 234689999999986 3333 38999999999999999998 799999999999998887889999
Q ss_pred EeCCChhHHHHHhcCCccEEEeccC--CCce---eccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHH
Q 017969 161 LPFGNQHLNEAIKGHRFNLAWIGAF--PGVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235 (363)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~ 235 (363)
+|.||+...... +..+|+.. .++. +..+.....+.+...+. .+....++++|.||++|+++|+ +++
T Consensus 213 ~N~Dd~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~--~~~~~~l~l~G~hn~~Na~aAi--a~~ 283 (809)
T PRK14573 213 YNGDCPRLKGCL-----QGHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGV--VYQDIELNLVGMHNVANAAAAM--GIA 283 (809)
T ss_pred EeCCCHHHHhhc-----ccEEEccCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEeccccHhhHHHHHHHH--HHH
Confidence 999999765422 12345432 1211 11111111233222221 1123578899999999999999 889
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCCCCCCCCCCc
Q 017969 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQES 311 (363)
Q Consensus 236 ~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~~~~g~~~~~ 311 (363)
..+|++.+.|+++|.+|++++||||++. ..+++.+|+| |||||+|++++++.++ .+|+++|+++.....- +
T Consensus 284 ~~lgi~~~~i~~~L~~f~~~~~R~e~~~-~~~~~~~i~D-~ahnP~~~~a~l~~l~~~~~~~rli~vf~~~~~~~~---~ 358 (809)
T PRK14573 284 LTLGIDEGAIRNALKGFSGVQRRLERKN-SSETFLFLED-YAHHPSEISCTLRAVRDAVGLRRIIAICQPHRFSRL---R 358 (809)
T ss_pred HHcCCCHHHHHHHHHhCCCCCCCCEEEe-ccCCcEEEEE-CCCCHHHHHHHHHHHHhhcCCCEEEEEEcCCcchhH---H
Confidence 9999999999999999999999999996 4567889999 5999999999999874 3578899974433211 1
Q ss_pred cchhhhhhhcccCcEEEEEc
Q 017969 312 NGFEKLIEPLNHHRCVITVC 331 (363)
Q Consensus 312 ~~~~~l~~~l~~~~~vi~~G 331 (363)
.++.++...+..+|.++++.
T Consensus 359 ~~~~~~~~~l~~~d~vilt~ 378 (809)
T PRK14573 359 ECLDSFPSAFQDADEVILTD 378 (809)
T ss_pred HHHHHHHHHHHHCCEEEECC
Confidence 12344445555688888853
No 28
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.2e-47 Score=374.28 Aligned_cols=292 Identities=24% Similarity=0.380 Sum_probs=229.0
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCC-CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~ 82 (363)
++|.+++++++||.+++|+++|++++++.+++++... ++.++|+||||||||||++||+++|+..|.++.+.||+|.|+
T Consensus 62 lvV~s~gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG~p~ 141 (418)
T PRK00683 62 LVVRSPGIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIPI 141 (418)
T ss_pred EEEECCCCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcCHHH
Confidence 6899999999999999999999999999998765421 246799999999999999999999999999999999999998
Q ss_pred hhhhhhcccCCCCCCCCcEEEEEeCcccccccCc-cccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEE
Q 017969 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~-~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (363)
... ..+.+++|+|+|++++..... ..+|+++|||||++||+|+|+|+|+|+++|.+++..+...
T Consensus 142 l~~----------~~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~s~e~y~~aK~~i~~~~~~~----- 206 (418)
T PRK00683 142 LDG----------MQQPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHGNLSAYFQAKQNIAKCLRNP----- 206 (418)
T ss_pred HHH----------hhcCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCCCHHHHHHHHHHHHHhhhCc-----
Confidence 432 124688999999998775443 2344899999999999999999999999999999865322
Q ss_pred eCCChhHHHHHhcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHH-cCC
Q 017969 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IGV 240 (363)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~-lgi 240 (363)
|+.... ...+|+.. +. .... ..+.....+ ..++++|.||++|+++|+ +++.. +|+
T Consensus 207 --~~~~~~--------~~~~~~~~--~~--~~~~-~~~~~~~~~-------~~~~~~g~hn~~Na~aA~--a~~~~l~g~ 262 (418)
T PRK00683 207 --DDLWVG--------DERSYGHS--YL--EYVQ-EIMRLLDKG-------SALKPLYLHDRYNYCAAY--ALANEVFPI 262 (418)
T ss_pred --cccccc--------ccCCcCce--ee--cCcc-hhhhhhccc-------cccCCCccchHHHHHHHH--HHHHHhcCC
Confidence 221110 01122211 00 0000 000000011 246789999999999999 78888 699
Q ss_pred CHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhh
Q 017969 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320 (363)
Q Consensus 241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~ 320 (363)
+.++|+++|++|++++||||++. ..++..+|||+||+||+|++++++.++ +|+++|+|+|.+.++ +.++++.
T Consensus 263 ~~~~i~~~l~~~~~~~~R~e~v~-~~~g~~~i~Ds~~t~~~s~~~al~~~~-~~~i~vlG~~~~~~d------~~~l~~~ 334 (418)
T PRK00683 263 SEESFLEAVATFEKPPHRMEYLG-EKDGVHYINDSKATTVSAVEKALLAVG-NQVIVILGGRNKGCD------FSSLLPV 334 (418)
T ss_pred CHHHHHHHHHhCCCCCCceEEEe-ecCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCCC------HHHHHHH
Confidence 99999999999999999999996 457899999999999999999999875 578999999988765 5578877
Q ss_pred cc-cCcEEEEEcccchHHHHhhCC
Q 017969 321 LN-HHRCVITVCALLFLKIVIQFP 343 (363)
Q Consensus 321 l~-~~~~vi~~G~~~~~~~~~~~~ 343 (363)
+. .++.++++|+.. ..+.+.+.
T Consensus 335 ~~~~~~~v~~~G~~~-~~i~~~l~ 357 (418)
T PRK00683 335 LRQTAKHVVAMGECR-QEIAQALS 357 (418)
T ss_pred HHHhCCEEEEECCCH-HHHHHHHh
Confidence 65 489999999886 56777664
No 29
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=2.3e-47 Score=408.92 Aligned_cols=286 Identities=20% Similarity=0.233 Sum_probs=226.9
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHhc---CCCeEeecc----cchhhhhhhhhcccCCCCCCCCcEEEEEeCcc---cc
Q 017969 42 SIKILAVTGTNGKSTVVTFVGQMLNHL---GIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY---QM 111 (363)
Q Consensus 42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~---g~~~~~~gn----ig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~---~l 111 (363)
+.++|+||||||||||++||+++|+.. +....+.|| +|.|++.... ..+.|++|+|+|++ ++
T Consensus 602 ~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn~n~~~g~~~~l~~~--------~~~~~~~VlE~s~~~~g~~ 673 (958)
T PRK11929 602 SLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLTLLRL--------RAQHRAAVFELGMNHPGEI 673 (958)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcccCCCcchHHHHhcC--------CCCCcEEEEEeCCCCCccH
Confidence 568999999999999999999999998 445567777 6777654322 45679999999964 66
Q ss_pred cccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcC-CccEEEeccCCC--c
Q 017969 112 EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFPG--V 188 (363)
Q Consensus 112 ~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~--~ 188 (363)
+.+..+++|+++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+|.||+....+.... ..++++||...+ +
T Consensus 674 ~~~~~~~~pdiaViTNI~~dHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~~~~~~~~~~~fg~~~~~~~ 753 (958)
T PRK11929 674 AYLAAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADV 753 (958)
T ss_pred HHHhCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHccCCCCCEEEEECCcHHHHHHHHhhcCCcEEEEeCCCCcce
Confidence 6655557999999999999999999999999999999999888889999999999887765433 335678875321 1
Q ss_pred eec---c-----ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeE
Q 017969 189 KID---T-----EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260 (363)
Q Consensus 189 ~~~---~-----~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e 260 (363)
... . ......+.+...+... .+.++++|.||++|+++|+ +++..+|+++++|+++|++|+++|||||
T Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~f~~~~gR~e 828 (958)
T PRK11929 754 YAEKIAKDISVGEAGGTRCQVVTPAGSA---EVYLPLIGEHNLRNALAAI--ACALAAGASLKQIRAGLERFQPVAGRMQ 828 (958)
T ss_pred EeeecccceeecCCCceEEEEEECCceE---EEEeCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCCce
Confidence 110 0 0011122222111111 2478999999999999999 8999999999999999999999999999
Q ss_pred EEEeecCCEEEEEcCCCCCHHHHHHHHhcccC---CcEEEEEcCCCCCCCCCCccchhhhhhhcc--cCcEEEEEcccch
Q 017969 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKG---HKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITVCALLF 335 (363)
Q Consensus 261 ~~~~~~~~~~iidD~~a~np~s~~~al~~~~~---~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~--~~~~vi~~G~~~~ 335 (363)
++. ..+++.+|||+|||||+|++++|+.++. +|+++|+|+|.|+|+++. ..|.++++.+. ..+.++++|+.+
T Consensus 829 ~~~-~~~~~~iidDsya~np~s~~aaL~~l~~~~~~~~i~VlG~~~e~g~~~~-~~h~~~g~~~~~~~~~~vi~~Ge~~- 905 (958)
T PRK11929 829 RRR-LSCGTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLGDMLELGDNGP-AMHREVGKYARQLGIDALITLGEAA- 905 (958)
T ss_pred EEE-cCCCcEEEEcCCCCCHHHHHHHHHHHHhccCCCEEEEECCchhcCcHHH-HHHHHHHHHHHHcCCCEEEEECcCH-
Confidence 996 3578899999999999999999999852 578999999999998874 45788888764 478999999997
Q ss_pred HHHHhhCC
Q 017969 336 LKIVIQFP 343 (363)
Q Consensus 336 ~~~~~~~~ 343 (363)
..+.+.+.
T Consensus 906 ~~i~~~~~ 913 (958)
T PRK11929 906 RDAAAAFG 913 (958)
T ss_pred HHHHHhhh
Confidence 57777664
No 30
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=7.2e-47 Score=398.44 Aligned_cols=283 Identities=17% Similarity=0.212 Sum_probs=222.6
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeec----ccchhhhhhhhhcccCCCCCCCCcEEEEEeCcccc---cc
Q 017969 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG----NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQM---EI 113 (363)
Q Consensus 41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g----nig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l---~~ 113 (363)
.+.++||||||||||||++||+++|+..|.++++.+ ++|+|.+.... ..+++++|+|+|+++. +.
T Consensus 105 ~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~~~~~~n~~ig~p~~~~~~--------~~~~~~~V~E~s~s~~~~~~~ 176 (822)
T PRK11930 105 FDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQL--------NEEHELGIFEAGISQPGEMEA 176 (822)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhccCcEecCCcccCcchhHHHHHhcC--------CCCCcEEEEEeCCCCCChHHH
Confidence 467899999999999999999999999887766544 47888764332 4578999999996543 33
Q ss_pred cCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcC--CccEEEeccCC---Cc
Q 017969 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH--RFNLAWIGAFP---GV 188 (363)
Q Consensus 114 ~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~--~~~~~~~~~~~---~~ 188 (363)
+..+++|+++|||||++||+|+|+|+|+|+++|.++++. .+.+|+|.||+....+.... ..++++||... ++
T Consensus 177 l~~~~~PdiaViTNI~~dHLd~~gt~e~y~~aK~~i~~~---~~~~vin~Dd~~~~~~~~~~~~~~~~~~~g~~~~~~d~ 253 (822)
T PRK11930 177 LQKIIKPTIGILTNIGGAHQENFRSIKQKIMEKLKLFKD---CDVIIYNGDNELISSCITKSNLTLKLISWSRKDPEAPL 253 (822)
T ss_pred HhhhhCCCEEEEcCccHHHHhhcCCHHHHHHHHHHHhcC---CCEEEEeCCCHHHHHHHHhhhcCCcEEEEcCCCCCCcE
Confidence 334589999999999999999999999999999999984 57899999999887655322 23567887531 22
Q ss_pred eec---cccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEee
Q 017969 189 KID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265 (363)
Q Consensus 189 ~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~ 265 (363)
... .......+.+...+... .+.++++|+||++|+++|+ +++..+|+++++|+++|++|+++|||||++. .
T Consensus 254 ~~~~i~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~f~~~~gR~e~~~-~ 327 (822)
T PRK11930 254 YIPFVEKKEDHTVISYTYKGEDF---HFEIPFIDDASIENLIHCI--AVLLYLGYSADQIQERMARLEPVAMRLEVKE-G 327 (822)
T ss_pred EEEEEEEcCCceEEEEEeCCceE---EEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCeeEEEE-c
Confidence 111 11112233333222221 3578999999999999999 8899999999999999999999999999996 4
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCCCCCCCCCCccchhhhhhhcc--cCcEEEEEcccchHHHH
Q 017969 266 IQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITVCALLFLKIV 339 (363)
Q Consensus 266 ~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~--~~~~vi~~G~~~~~~~~ 339 (363)
.+++.+|||+|||||+|++++|+.++ ++++++|+|+|.++|..+ ...|+++++.++ .++.+|++|+.+ ..+.
T Consensus 328 ~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~~~~~ilIlG~m~elG~~~-~~~~~~l~~~l~~~~i~~vi~~G~~~-~~~~ 405 (822)
T PRK11930 328 INNCTLINDSYNSDLQSLDIALDFLNRRSQSKKKTLILSDILQSGQSP-EELYRKVAQLISKRGIDRLIGIGEEI-SSEA 405 (822)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEECChHhcCchH-HHHHHHHHHHHHHcCCCEEEEECHHH-HHHH
Confidence 57899999999999999999999985 247899999999988766 357889999886 389999999986 4555
Q ss_pred hhC
Q 017969 340 IQF 342 (363)
Q Consensus 340 ~~~ 342 (363)
+.+
T Consensus 406 ~~~ 408 (822)
T PRK11930 406 SKF 408 (822)
T ss_pred Hhc
Confidence 544
No 31
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=4.8e-46 Score=368.93 Aligned_cols=270 Identities=25% Similarity=0.295 Sum_probs=205.5
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhh-cccCC-----------CCCCCCcEEEEEeCcc
Q 017969 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFH-CIALP-----------SSKPKFQVAVVEVSSY 109 (363)
Q Consensus 42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~-~~~~~-----------~~~~~~d~~VlE~g~~ 109 (363)
+.++||||||||||||++||+++|++.|.++++.||++.++...... ..+++ ..+.++|++|+|+|++
T Consensus 94 ~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~~~i~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~ 173 (460)
T PRK00139 94 KLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNGIGGELIPSGLTTPDALDLQRLLAELVDAGVTYAAMEVSSH 173 (460)
T ss_pred ccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcccccCCeecccCCCCcCHHHHHHHHHHHHHCCCCEEEEEcchh
Confidence 56899999999999999999999999999999999987765432110 00010 0145789999999987
Q ss_pred ccc--ccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCccEEEeccC--
Q 017969 110 QME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF-- 185 (363)
Q Consensus 110 ~l~--~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~-- 185 (363)
+++ .+.. ++|+++|||||++||+++|||+|+|+++|++|++... +.+|+|.||+....+... +.+|+..
T Consensus 174 ~~~~~~l~~-~~p~iaViTnI~~dHl~~~gt~e~i~~~K~~i~~~~~--~~~v~n~dd~~~~~~~~~----~~~~~~~~~ 246 (460)
T PRK00139 174 ALDQGRVDG-LKFDVAVFTNLSRDHLDYHGTMEDYLAAKARLFSELG--LAAVINADDEVGRRLLAL----PDAYAVSMA 246 (460)
T ss_pred hHhhchhcC-CcCCEEEEcCCCcccCCcCCCHHHHHHHHHHHHhcCC--CeEEEEcCcHhHHHHHhh----cEEEEecCC
Confidence 654 3334 7999999999999999999999999999999998642 489999999987766541 3445432
Q ss_pred -CCceeccccccceEEEecCCeEEEEE-eeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEE
Q 017969 186 -PGVKIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263 (363)
Q Consensus 186 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~ 263 (363)
.++.. ..+.....+..+.+. .+.++++|.||++|+++|+ +++..+|+++++|+++|++|+++|||||++.
T Consensus 247 ~~~~~~------~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~~~~i~~~L~~~~~~~gR~e~~~ 318 (460)
T PRK00139 247 GADLRA------TDVEYTDSGQTFTLVTEVESPLIGRFNVSNLLAAL--AALLALGVPLEDALAALAKLQGVPGRMERVD 318 (460)
T ss_pred CCcEEE------EEEEEecCceEEEEEEEEEecccchhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCCcEEEE
Confidence 11111 112222223233332 4578999999999999999 8999999999999999999999999999996
Q ss_pred eecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchhhhhhhc-cc-CcEEEEEccc
Q 017969 264 RDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPL-NH-HRCVITVCAL 333 (363)
Q Consensus 264 ~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l-~~-~~~vi~~G~~ 333 (363)
..+++++|+| |||||+|++++++.++ ++|+++|+|+..++. ..|+++...+ .. .|.++++++.
T Consensus 319 -~~~~~~iI~D-yahNP~s~~aal~~l~~~~~~r~i~VlG~g~~k~-----~~~~~~~~~~~~~~~d~vi~~~~~ 386 (460)
T PRK00139 319 -AGQGPLVIVD-YAHTPDALEKVLEALRPHAKGRLICVFGCGGDRD-----KGKRPLMGAIAERLADVVIVTSDN 386 (460)
T ss_pred -cCCCCEEEEE-CCCCHHHHHHHHHHHHhhcCCcEEEEECCCCCCc-----hhhhHHHHHHHHHcCCEEEEECCC
Confidence 3468899999 7999999999999985 357899999744432 2455555544 33 6888888865
No 32
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=1.7e-45 Score=365.86 Aligned_cols=280 Identities=24% Similarity=0.322 Sum_probs=206.3
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhh----hcccCC-----------CCCCCCcEEEEEe
Q 017969 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF----HCIALP-----------SSKPKFQVAVVEV 106 (363)
Q Consensus 42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~----~~~~~~-----------~~~~~~d~~VlE~ 106 (363)
+.++|+||||||||||++||+++|+..|.++++.|+.|.+...... ..++++ ..+.+.|++|+|+
T Consensus 84 ~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~n~~ig~p~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~ 163 (464)
T TIGR01085 84 KLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTLQSTLAEMVEAGAQYAVMEV 163 (464)
T ss_pred ccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECCeeeecCcccCCCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5689999999999999999999999999998777776655321100 000000 0135779999999
Q ss_pred Cccccc--ccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCccEEEecc
Q 017969 107 SSYQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA 184 (363)
Q Consensus 107 g~~~l~--~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~ 184 (363)
|+++++ .+.. ++|+++|||||++||+++|||+|+|+++|.++++.+++++.+|+|.||+....+.......+.+...
T Consensus 164 g~~~~~~~~l~~-~~p~iaviTnI~~dHl~~~gs~e~i~~~K~~i~~~~~~~g~~v~n~dd~~~~~~~~~~~~~~~~~~~ 242 (464)
T TIGR01085 164 SSHALAQGRVRG-VRFDAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKRLPKDITVSAI 242 (464)
T ss_pred cHHHHhhCCccC-ceeCEEEEccCCCCCCcccCCHHHHHHHHHHHhccccCCCeEEEEcCCHHHHHHHHhcCCCeEEEEe
Confidence 986554 4444 7999999999999999999999999999999999988788999999999887776443332222211
Q ss_pred CC-------Cceecc---ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcC-CCHHHHHHHhhcCC
Q 017969 185 FP-------GVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG-VDVEALNSTIEILR 253 (363)
Q Consensus 185 ~~-------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lg-i~~~~i~~~l~~~~ 253 (363)
.. ++.... ...+..+.+...+... .+.++++|.||++|+++|+ +++..+| +++++|+++|++|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a~a~~lg~i~~e~i~~~L~~~~ 317 (464)
T TIGR01085 243 TQPADGRAQDIKITDSGYSFEGQQFTFETPAGEG---HLHTPLIGRFNVYNLLAAL--ATLLHLGGIDLEDIVAALEKFR 317 (464)
T ss_pred cCCCccccccEEEEEEEEecCceEEEEEeCCceE---EEEecCccHhHHHHHHHHH--HHHHHcCCCCHHHHHHHHHhCC
Confidence 11 111100 0011122222211111 2468999999999999999 8899999 99999999999999
Q ss_pred CCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchhhhhhhcc--cCcEEE
Q 017969 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVI 328 (363)
Q Consensus 254 ~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~--~~~~vi 328 (363)
++|||||++. ..+++.+|+| |||||+||+++++.++ ++|+++|+|...+. ...|+++.+.+. ..|.++
T Consensus 318 ~~~gR~e~~~-~~~g~~vi~D-y~~NP~s~~aal~~l~~~~~~r~i~VlGlg~~~-----~~~~~~~~~~~~~~~~d~vi 390 (464)
T TIGR01085 318 GVPGRMELVD-GGQKFLVIVD-YAHTPDALEKALRTLRKHKDGRLIVVFGCGGDR-----DRGKRPLMGAIAEQLADLVI 390 (464)
T ss_pred CCCCCcEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCcEEEEECCCCCC-----CcchhHHHHHHHHhcCCEEE
Confidence 9999999996 3467899999 7999999999999984 35789999922222 134777777664 368999
Q ss_pred EEcccc
Q 017969 329 TVCALL 334 (363)
Q Consensus 329 ~~G~~~ 334 (363)
++|+..
T Consensus 391 ~~g~~~ 396 (464)
T TIGR01085 391 LTSDNP 396 (464)
T ss_pred EeCCCc
Confidence 998864
No 33
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=4.8e-45 Score=363.68 Aligned_cols=284 Identities=23% Similarity=0.269 Sum_probs=205.0
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeeccc----c---------hhhhhhhhhcccCCCCCCCCcEEEEEeC
Q 017969 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL----G---------NPLSEAAFHCIALPSSKPKFQVAVVEVS 107 (363)
Q Consensus 41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gni----g---------~p~~~~~~~~~~~~~~~~~~d~~VlE~g 107 (363)
.+.++||||||||||||++||+++|+..|.++++.|+. | .|.....++.. ....+.+.+++|+|+|
T Consensus 108 ~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~ig~~~~~~~~~~p~~~~l~~~~-~~~~e~g~~~~v~Evs 186 (481)
T PRK14022 108 HKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGETFFKSALTTPESLDLFKMM-AEAVDNGMTHLIMEVS 186 (481)
T ss_pred hccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeeeeccCCeeeeCCCCCchHHHHHHHH-HHHHHCCCCEEEEEec
Confidence 35689999999999999999999999999888766653 2 45221110000 0012346789999999
Q ss_pred ccccc--ccCccccccEEEEeCCChhhhcc--CCCHHHHHHHHHHhcccCCCCcEEEEeCC-ChhHHHHHhcCCccEEEe
Q 017969 108 SYQME--IPNKYFCPTVSVVLNLTPDHLER--HKTMKNYALTKCHLFSHMVNTKLGLLPFG-NQHLNEAIKGHRFNLAWI 182 (363)
Q Consensus 108 ~~~l~--~~~~~~~p~i~viTnI~~dHl~~--~gt~e~~~~~K~~i~~~~~~~~~~v~n~d-d~~~~~~~~~~~~~~~~~ 182 (363)
|+++. .+.. ++|+++|||||++||+|+ |+|+|+|+.+|++|++ +++.+|+|.| ++...........++++|
T Consensus 187 S~~~~~~r~~~-~~pdiaViTNI~~DHld~L~~~t~e~~a~aK~~i~~---~~~~~Vln~d~d~~~~~~~~~~~~~~~~~ 262 (481)
T PRK14022 187 SQAYLVGRVYG-LTFDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSELLEQVTPQEHDFY 262 (481)
T ss_pred hhHHHhccccC-ccccEEEEcCCCcccCCCCCCCCHHHHHHHHHHHhc---CCCEEEEEcCCCHHHHHHHHhcCCCEEEE
Confidence 87532 2323 799999999999999999 8899999999999997 4789999998 554332222223356778
Q ss_pred ccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEE
Q 017969 183 GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262 (363)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~ 262 (363)
|......+... ..+.+...+.. ...+.++++|.||++|+++|+ +++..+|+++++|+++|++ .++|||||++
T Consensus 263 g~~~~~~~~~~---~~~~~~~~~~~--~~~~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~i~~~L~~-~~~~gR~e~i 334 (481)
T PRK14022 263 GIDSENQIMAS---NAFSFEATGKL--AGTYDIQLIGKFNQENAMAAG--LACLRLGASLEDIQKGIAQ-TPVPGRMEVL 334 (481)
T ss_pred ecCCccceEEE---EEEEEEEcccC--CceEEEEEechhhHHHHHHHH--HHHHHcCCCHHHHHHHhcc-CCCCCCeEEE
Confidence 75321111100 02333211110 011356799999999999999 8899999999999999999 8999999999
Q ss_pred EeecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchhhhhhhcccC-c-EEEEEcccc---
Q 017969 263 HRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-R-CVITVCALL--- 334 (363)
Q Consensus 263 ~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~~~-~-~vi~~G~~~--- 334 (363)
. ..+++.+|+| |||||+|++++++.++ ++|+++|+|+|.++|... +.++++.+... + .++++++..
T Consensus 335 ~-~~~g~~vi~D-yahNP~s~~aal~~l~~~~~~r~i~V~G~~~e~g~~~----~~~~~~~~~~~~~~~vi~~~~~~r~e 408 (481)
T PRK14022 335 T-QSNGAKVFID-YAHNGDSLNKLIDVVEEHQKGKLILLLGAAGNKGESR----RPDFGRVANRHPYLQVILTADDPNNE 408 (481)
T ss_pred E-CCCCCEEEEE-CCCCHHHHHHHHHHHhhhCCCCEEEEECCCCCCCcch----hHHHHHHHHhcCCceEEEccCCCCCC
Confidence 6 3467889999 7999999999999884 458999999999987643 56788877643 3 388887542
Q ss_pred -hHHHHhhCC
Q 017969 335 -FLKIVIQFP 343 (363)
Q Consensus 335 -~~~~~~~~~ 343 (363)
...+.+.+.
T Consensus 409 ~~~~i~~~i~ 418 (481)
T PRK14022 409 DPKMITQEIA 418 (481)
T ss_pred CHHHHHHHHH
Confidence 145666553
No 34
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=3.1e-43 Score=377.08 Aligned_cols=281 Identities=22% Similarity=0.282 Sum_probs=210.5
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhh-cccCC-----------CCCCCCcEEEEEeCc
Q 017969 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFH-CIALP-----------SSKPKFQVAVVEVSS 108 (363)
Q Consensus 41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~-~~~~~-----------~~~~~~d~~VlE~g~ 108 (363)
++.++||||||||||||++||+++|+..|.++++.||+|.++....+. .++++ ..+.++|++|+|+|+
T Consensus 110 ~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~i~~~~i~~~~t~~~~~~~~~~l~~~~~~~~~~~VlE~ss 189 (958)
T PRK11929 110 EQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGARLDGRLIPGSLTTPDAIILHRILARMRAAGADAVAMEASS 189 (958)
T ss_pred hccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCccccCCCeeeecCCCCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 356899999999999999999999999999999999988765332111 01111 114578999999998
Q ss_pred cccc--ccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCC--ccEEEecc
Q 017969 109 YQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR--FNLAWIGA 184 (363)
Q Consensus 109 ~~l~--~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~--~~~~~~~~ 184 (363)
++++ .+.. ++|+++|||||++||+++|||+|+|+++|++|++.+++++.+|+|.|||....+..... ..+.+++.
T Consensus 190 ~~l~~~rl~~-~~p~iaviTnI~~dHl~~~gt~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~ 268 (958)
T PRK11929 190 HGLEQGRLDG-LRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGLGAAVINADDPAAARLLAALPRGLKVGYSPQ 268 (958)
T ss_pred chHhhCcccc-cccCEEEEeCCCccccccCCCHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHHHHHcCCCceEEEEee
Confidence 7664 3334 69999999999999999999999999999999998888899999999998877764332 23444543
Q ss_pred C--CCceec---cccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCee
Q 017969 185 F--PGVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259 (363)
Q Consensus 185 ~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~ 259 (363)
. .++... ....+..+.+...+.... +.++++|.||++|+++|+ +++..+|+++++|+++|++|+++||||
T Consensus 269 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~I~~~L~~~~~~~gR~ 343 (958)
T PRK11929 269 NAGADVQARDLRATAHGQVFTLATPDGSYQ---LVTRLLGRFNVSNLLLVA--AALKKLGLPLAQIARALAAVSPVPGRM 343 (958)
T ss_pred CCCccEEEEEEEEcCCceEEEEEeCCceEE---EEecCccHhhHHHHHHHH--HHHHHcCCCHHHHHHHHhcCCCCCCCc
Confidence 2 122211 111122333332222222 468999999999999999 889999999999999999999999999
Q ss_pred EEEE--eecCCEEEEEcCCCCCHHHHHHHHhccc------CCcEEEEEcCCCCCCCCCCccchhhhhhhc-c-cCcEEEE
Q 017969 260 QIVH--RDIQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQAKVLNGQESNGFEKLIEPL-N-HHRCVIT 329 (363)
Q Consensus 260 e~~~--~~~~~~~iidD~~a~np~s~~~al~~~~------~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l-~-~~~~vi~ 329 (363)
|++. ...+++.+|+| |||||+|++++++.++ ++|+++|+|+..++. ..++++...+ . .+|.+++
T Consensus 344 e~i~~~~~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~~~~r~i~V~g~g~~r~-----~~~~~~~~~~~~~~~d~vi~ 417 (958)
T PRK11929 344 ERVGPTAGAQGPLVVVD-YAHTPDALAKALTALRPVAQARNGRLVCVFGCGGDRD-----KGKRPEMGRIAAELADRVVV 417 (958)
T ss_pred EEeccccCCCCCEEEEE-CCCCHHHHHHHHHHHHHhcccCCCcEEEEECCCCCCC-----cchhHHHHHHHHHhCCEEEE
Confidence 9993 12467889999 6999999999999885 257899999765442 2466666655 3 3788887
Q ss_pred Eccc
Q 017969 330 VCAL 333 (363)
Q Consensus 330 ~G~~ 333 (363)
+.+.
T Consensus 418 t~~~ 421 (958)
T PRK11929 418 TSDN 421 (958)
T ss_pred cCCC
Confidence 6543
No 35
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=1.6e-42 Score=337.96 Aligned_cols=268 Identities=21% Similarity=0.246 Sum_probs=199.0
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeeccc------------chhhhhhhhhc--------c-c---CC----
Q 017969 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFHC--------I-A---LP---- 93 (363)
Q Consensus 42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gni------------g~p~~~~~~~~--------~-~---~~---- 93 (363)
+.++||||||||||||+.||+++|++.|++++++++. |.+++...+.. . + ++
T Consensus 17 ~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~fe 96 (397)
T TIGR01499 17 LYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQVRPILEKLSQQPTYFE 96 (397)
T ss_pred hCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHHHHHHHHHHhccCCCCHHH
Confidence 5689999999999999999999999999999887762 55554422210 0 0 11
Q ss_pred ---------CCCCCCcEEEEEeCc-ccccccCccccccEEEEeCCChhhhccCC-CHHHHHHHHHHhcccCCCCcEEEEe
Q 017969 94 ---------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLP 162 (363)
Q Consensus 94 ---------~~~~~~d~~VlE~g~-~~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~~~v~n 162 (363)
..+.++|++|+|+|. |++|.++. ++|+++|||||+.||+++|| |+|+|+.+|++|++ +++.+|+|
T Consensus 97 ~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~-i~p~vaViTnI~~DHl~~lG~t~e~ia~~Ka~I~k---~~~~~v~~ 172 (397)
T TIGR01499 97 LLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNV-IEPLVSVITSIGLDHTEILGDTLEEIAWEKAGIIK---EGVPIVTG 172 (397)
T ss_pred HHHHHHHHHHHHCCCCEEEEeecCCCCcccccc-cCCCeEEEccccHHHHHHhCccHHHHHHHHhCccC---CCCCEEEc
Confidence 235789999999996 57887776 78999999999999999999 99999999999998 46789999
Q ss_pred CCChhHHHHHh----cCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHc
Q 017969 163 FGNQHLNEAIK----GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238 (363)
Q Consensus 163 ~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~l 238 (363)
.|++....+.. ....++++++.+ +..... ....+.+..... ....+.++++|.||++|+++|+ +++..+
T Consensus 173 ~d~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~--~~~~~~~~l~G~~~~~N~~~Ai--aa~~~l 245 (397)
T TIGR01499 173 PQEPEALNVLKKKAQEKGAPLFVVGRD--FNYSET-DENYLSFSGANL--FLEPLALSLLGDHQAENAALAL--AALEVL 245 (397)
T ss_pred CCChHHHHHHHHHHHHcCCCEEEeccc--eeeccc-ccceEEeecccc--cccccCCCCCCHHHHHHHHHHH--HHHHHH
Confidence 99987765432 223455666532 211110 012233321110 1112467899999999999999 778887
Q ss_pred CC-----CHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCCCCCCCCC
Q 017969 239 GV-----DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQ 309 (363)
Q Consensus 239 gi-----~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~~~~g~~~ 309 (363)
|. ++++|+++|+++. +|||||++. .++..+|.|+ ||||+|++++++.++ ++++++|+|++.++
T Consensus 246 g~~~~~i~~~~i~~~L~~~~-~pGR~e~i~--~~~~~viiD~-AHNp~a~~~~l~~l~~~~~~~~i~~V~G~~~dk---- 317 (397)
T TIGR01499 246 GKQRPKLSEEAIRKGLANTI-WPGRLEILS--EDNPNILLDG-AHNPHSAEALAEWFKKRFNGRPIILLFGALADK---- 317 (397)
T ss_pred HhccCCCCHHHHHHHHHhCC-CCceEEEEe--cCCCEEEEEC-CCCHHHHHHHHHHHHHhcCCCCeEEEEEeeCCC----
Confidence 75 5899999999998 599999995 3456777885 999999999999884 34788999988654
Q ss_pred Cccchhhhhhhccc-CcE-EEEEc
Q 017969 310 ESNGFEKLIEPLNH-HRC-VITVC 331 (363)
Q Consensus 310 ~~~~~~~l~~~l~~-~~~-vi~~G 331 (363)
++.++.+.+.+ ++. ++++.
T Consensus 318 ---d~~~~~~~l~~~~~~d~~~~~ 338 (397)
T TIGR01499 318 ---DAAAMLAPLKPVVDKEVFVTP 338 (397)
T ss_pred ---CHHHHHHHHhhccCcEEEEEC
Confidence 57788887654 555 66664
No 36
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=100.00 E-value=4.8e-40 Score=345.74 Aligned_cols=283 Identities=18% Similarity=0.206 Sum_probs=209.2
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhhc--------ccCCCCCCCCcEEEEEeCcccc-
Q 017969 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC--------IALPSSKPKFQVAVVEVSSYQM- 111 (363)
Q Consensus 41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~~--------~~~~~~~~~~d~~VlE~g~~~l- 111 (363)
.+.|+|+||||||||||++||+++|+..|+++++.++.|..+....+.. ...-..++++|++|+|+|++++
T Consensus 477 ~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~~i~~~~i~~g~~t~p~sa~~~l~~~~vd~aVlE~~~ggil 556 (864)
T TIGR02068 477 GRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARRILMDPTVDAAVLETARGGIL 556 (864)
T ss_pred CceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCceEECCEEEecCCCCChHHHHHHhhCCCCCEEEEEccCCchh
Confidence 3568999999999999999999999999999987655443222111000 0000135678999999998765
Q ss_pred cccCccccccEEEEeCCChhhhccC--CCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCccEEEeccCCCce
Q 017969 112 EIPNKYFCPTVSVVLNLTPDHLERH--KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVK 189 (363)
Q Consensus 112 ~~~~~~~~p~i~viTnI~~dHl~~~--gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~ 189 (363)
+....+.+|+++|||||+.||++++ +|+|+|+.+|+.+++.+++++.+|+|.|||.+..++..+..++++|+.+.+..
T Consensus 557 ~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~g~~VlNaDd~~~~~~a~~~~~~vi~f~~~~~~~ 636 (864)
T TIGR02068 557 REGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPDGYAVLNADDPMVAAMAEKCKGKIAYFSMDPNNP 636 (864)
T ss_pred hccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHhCCCCEEEEecCCCCh
Confidence 4445546899999999999999865 59999999999999988889999999999998888766667788888543211
Q ss_pred -----eccccc-----cceEEEecCCeEE---EEEeeccCCCc--hhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 017969 190 -----IDTEAK-----TASFEVPAVGVVS---QLQLHNMKVMG--RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254 (363)
Q Consensus 190 -----~~~~~~-----~~~~~~~~~~~~~---~~~~~~l~l~G--~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~ 254 (363)
+..... ...+....++... ......+++.| .||++|+++|+ ++++.+|++++.|+++|++|++
T Consensus 637 ~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~lpl~~~G~g~~nv~NalaAi--aaa~~lgi~~e~I~~gL~~F~~ 714 (864)
T TIGR02068 637 TVAAHIADGGRAVYYENGYIVIARGGDEVAIARIAAIPLTMGGRVAFQIENALAAV--AAAWALGVPIELIRAGIRTFDA 714 (864)
T ss_pred HHHHHHHcCCcEEEEcCCEEEEEecCccccccceeeeccccCCcccchHHHHHHHH--HHHHHcCCCHHHHHHHHHhccc
Confidence 110100 0011111111111 11123445555 89999999999 8899999999999999999986
Q ss_pred ----CCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchhhhhhhccc-CcE
Q 017969 255 ----PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRC 326 (363)
Q Consensus 255 ----~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~~-~~~ 326 (363)
+|||||++. .+++.+|+| |||||+|++++++.++ .+|+++|+|++.++.+ .++.++++.+.+ +|.
T Consensus 715 ~~~~~pGR~e~~~--~~g~~vI~D-yAHNP~a~~all~~l~~~~~~r~i~Vig~~gdr~~----~~~~~lg~~l~~~~d~ 787 (864)
T TIGR02068 715 DAAQAPGRFNLFN--LGGAHVLVD-YGHNPAAIEAVGAAIRNWPARRRIGVIGGPGDRRD----EDLVEQGELLGGAFDQ 787 (864)
T ss_pred cccCCCCceEEEE--eCCcEEEEE-cCCCHHHHHHHHHHHHhcCCCCEEEEECCCCCCCh----hHHHHHHHHHHHhCCE
Confidence 899999984 467889999 5999999998777763 3578999999976543 357888888864 899
Q ss_pred EEEEcc
Q 017969 327 VITVCA 332 (363)
Q Consensus 327 vi~~G~ 332 (363)
+|++.+
T Consensus 788 vil~~~ 793 (864)
T TIGR02068 788 IILKED 793 (864)
T ss_pred EEEEeC
Confidence 998754
No 37
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=7e-40 Score=326.47 Aligned_cols=288 Identities=16% Similarity=0.168 Sum_probs=202.8
Q ss_pred eeHHHHHHhhCC---CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc------------c--chhhhhhhhhcc-
Q 017969 29 MSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------L--GNPLSEAAFHCI- 90 (363)
Q Consensus 29 l~~~~~~~~~~~---~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn------------i--g~p~~~~~~~~~- 90 (363)
|.++..+.+.+. ++.++|+||||||||||++||++||+++|++++++.+ . |.|++...+..+
T Consensus 58 L~r~~~ll~~LG~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~ 137 (510)
T PLN02913 58 LGRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLF 137 (510)
T ss_pred HHHHHHHHHHcCCchhhCcEEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHH
Confidence 455555555432 3568999999999999999999999999999988766 3 667765543110
Q ss_pred -------c----------CC-----------CCCCCCcEEEEEeCc-ccccccCcc--ccccEEEEeCCChhhhccCC-C
Q 017969 91 -------A----------LP-----------SSKPKFQVAVVEVSS-YQMEIPNKY--FCPTVSVVLNLTPDHLERHK-T 138 (363)
Q Consensus 91 -------~----------~~-----------~~~~~~d~~VlE~g~-~~l~~~~~~--~~p~i~viTnI~~dHl~~~g-t 138 (363)
. +. +.+.++|++|+|+|. |++|.++.+ .+|+++|||||+.||++++| |
T Consensus 138 ~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~T 217 (510)
T PLN02913 138 HGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGS 217 (510)
T ss_pred HHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhccc
Confidence 0 00 235789999999996 578988873 23599999999999999999 9
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEeC-CChhHHHH----HhcCCccEEEeccC-CCceecc-c-cccceEEEec-----CC
Q 017969 139 MKNYALTKCHLFSHMVNTKLGLLPF-GNQHLNEA----IKGHRFNLAWIGAF-PGVKIDT-E-AKTASFEVPA-----VG 205 (363)
Q Consensus 139 ~e~~~~~K~~i~~~~~~~~~~v~n~-dd~~~~~~----~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~-----~~ 205 (363)
+|+|+.+|++|++ ++.++|++. ..+....+ +.....+++.++.. .++.... . .....+.+.. .+
T Consensus 218 le~IA~eKagIik---~g~pvV~~~~~~~~~~~vi~~~a~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (510)
T PLN02913 218 LESIALAKSGIIK---QGRPVVLGGPFLPHIESILRDKASSMNSPVVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVEK 294 (510)
T ss_pred HHHHHHHHhhhcc---CCCCEEECCCCCHHHHHHHHHHHHHhCCCEEEeccccccceeecccccCCceeEEecccccccc
Confidence 9999999999999 577888875 33443333 23334566655321 1111100 0 0111122210 00
Q ss_pred ---eEEEEEeeccCCCchhHHHHHHHHHHHHHHHHc-----CCCHHHHHHHhhcCCCCCCeeEEEEeec-------CCEE
Q 017969 206 ---VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-----GVDVEALNSTIEILRTPPHRMQIVHRDI-------QGVT 270 (363)
Q Consensus 206 ---~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~l-----gi~~~~i~~~l~~~~~~~gR~e~~~~~~-------~~~~ 270 (363)
.......+.++++|.||+.|+++|+ +++..+ +++.+.|+++|++++| |||||++. .. .+..
T Consensus 295 ~~~~~~~~~~~~l~L~G~hq~~Naa~Al--aa~~~L~~~~~~i~~~~I~~gL~~~~~-pGR~E~i~-~~~~~~~~~~~~~ 370 (510)
T PLN02913 295 DDPLFIELSDVNLRMLGSHQLQNAVTAA--CAALCLRDQGWRISDASIRAGLENTNL-LGRSQFLT-SKEAEVLGLPGAT 370 (510)
T ss_pred ccccccccccccCCCCCHHHHHHHHHHH--HHHHHHHhcCCCCCHHHHHHHHHhCCC-CCceEEee-ccccccccCCCCE
Confidence 0001112468899999999999999 677776 6999999999999997 79999984 11 2457
Q ss_pred EEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCCCCCCCCCCccchhhhhhhc-c--cCcEEEEEc
Q 017969 271 WVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPL-N--HHRCVITVC 331 (363)
Q Consensus 271 iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l-~--~~~~vi~~G 331 (363)
+|+|+ +|||+|++++++.++ .+++++|+|.+.++ +|.++.+.+ . .+|.++++.
T Consensus 371 vIlDg-AHNp~s~~al~~~L~~~~~~~ki~~V~gml~DK-------d~~~~l~~l~~~~~~d~v~~~~ 430 (510)
T PLN02913 371 VLLDG-AHTKESAKALVDTIKTAFPEARLALVVAMASDK-------DHLAFASEFLSGLKPEAVFLTE 430 (510)
T ss_pred EEEEC-CCCHHHHHHHHHHHHHhcCCCCEEEEEEccCCC-------CHHHHHHHHhcccCCCEEEEEc
Confidence 99997 799999999998873 34677777777553 688888855 4 368888874
No 38
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=9.5e-40 Score=313.89 Aligned_cols=278 Identities=21% Similarity=0.235 Sum_probs=205.9
Q ss_pred eeHHHHHHhhCC---CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc------------cchhhhhhhhhcc---
Q 017969 29 MSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHCI--- 90 (363)
Q Consensus 29 l~~~~~~~~~~~---~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn------------ig~p~~~~~~~~~--- 90 (363)
+.++..+.+.+. +..++|+|+|||||+||++|+.+||.++|++++.+++ .|.|+++..+...
T Consensus 27 L~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ 106 (427)
T COG0285 27 LERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFER 106 (427)
T ss_pred hHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHH
Confidence 667776666542 4678999999999999999999999999999987776 3666665443210
Q ss_pred ----cC----C---------------CCCCCCcEEEEEeCc-ccccccCccccccEEEEeCCChhhhccCC-CHHHHHHH
Q 017969 91 ----AL----P---------------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALT 145 (363)
Q Consensus 91 ----~~----~---------------~~~~~~d~~VlE~g~-~~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~ 145 (363)
.. . +.+.++|++|+|+|. |++|++++ +.|+++|||||+.||++++| |+|+|+.+
T Consensus 107 ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGRlDATNV-i~p~vsvIT~I~lDH~~~LG~tie~IA~E 185 (427)
T COG0285 107 VEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRLDATNV-IEPDVSVITSIGLDHTAFLGDTLESIARE 185 (427)
T ss_pred HHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEeccccccccchhc-cCCceEEEcccChhHHHHhCCcHHHHHHH
Confidence 00 0 235679999999995 68999998 88999999999999999999 99999999
Q ss_pred HHHhcccCCCCcEEEEeC-CChhHHHHH----hcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCch
Q 017969 146 KCHLFSHMVNTKLGLLPF-GNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220 (363)
Q Consensus 146 K~~i~~~~~~~~~~v~n~-dd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~ 220 (363)
|++|++ ++.++|+.. +.|...... .....++..++.+ +..... +..+.+...+ ......+|+.|.
T Consensus 186 KAGI~k---~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~---~~~~~~lp~l~~ 255 (427)
T COG0285 186 KAGIIK---AGKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPD--FQVLEE--GNGFSFQGGG---GLLDLPLPLLGG 255 (427)
T ss_pred hhhhcc---CCCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccc--hhhccc--cceEEEecCC---eeeeeccccccc
Confidence 999999 577788876 446444433 2233444444321 111111 2233333212 122358898888
Q ss_pred h-HHHHHHHHHHHHHHHHcC--CCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----CC
Q 017969 221 H-NYHNAAVAALSVLGLDIG--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GH 293 (363)
Q Consensus 221 h-~~~Nal~A~~~a~~~~lg--i~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~ 293 (363)
| |+.||++|+ +++..++ ++.+.|++||++..| |||||++. .+ +.++.|. ||||+|+.++.+.++ .+
T Consensus 256 ~~Q~~NAa~Ai--~al~~l~~~i~~~~i~~gl~~~~w-pGR~e~l~--~~-p~i~lDg-AHNp~aa~~La~~l~~~~~~~ 328 (427)
T COG0285 256 HHQIENAALAI--AALEALGKEISEEAIRKGLANVDW-PGRLERLS--EN-PLILLDG-AHNPHAARALAETLKTLFNDR 328 (427)
T ss_pred hhHHHHHHHHH--HHHHHhcccCCHHHHHHHHHhCcC-CceEEEec--CC-CeEEEEC-CCCHHHHHHHHHHHHHHhccC
Confidence 7 999999999 7888887 589999999999997 99999995 34 5677775 999999999888774 23
Q ss_pred c-EEEEEcCCCCCCCCCCccchhhhhhhcccC-cEEEEEc
Q 017969 294 K-CVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITVC 331 (363)
Q Consensus 294 ~-~i~IlG~~~~~g~~~~~~~~~~l~~~l~~~-~~vi~~G 331 (363)
+ +++|+|.+.++ |...+.+.|.+. +.++++.
T Consensus 329 ~~~~~v~g~l~dK-------d~~~~l~~L~~~~~~~~~~~ 361 (427)
T COG0285 329 PRLTLVFGMLKDK-------DIAGMLAALLPIVDEIYTTP 361 (427)
T ss_pred CceEEEEEeecCC-------CHHHHHHHhhccCcEEEEcc
Confidence 3 78999988876 466777777654 5677663
No 39
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5e-39 Score=315.89 Aligned_cols=281 Identities=25% Similarity=0.304 Sum_probs=212.3
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh-hhhh-hcccCC-----------CCCCCCcEEEEEeC
Q 017969 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS-EAAF-HCIALP-----------SSKPKFQVAVVEVS 107 (363)
Q Consensus 41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~-~~~~-~~~~~~-----------~~~~~~d~~VlE~g 107 (363)
++.++|+||||||||||++++.++++..|.++++.|..|.-++ .... ..+++| ..+...++++||++
T Consensus 89 ~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~~vmEvs 168 (475)
T COG0769 89 GKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVS 168 (475)
T ss_pred cCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCcccccCCCCccHHHHHHHHHHHHHcCCcEEEEEee
Confidence 3579999999999999999999999999999988887665442 1111 012222 13567899999999
Q ss_pred cccccccCcc-ccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHH---HhcCCccEEEec
Q 017969 108 SYQMEIPNKY-FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEA---IKGHRFNLAWIG 183 (363)
Q Consensus 108 ~~~l~~~~~~-~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~---~~~~~~~~~~~~ 183 (363)
|+.+..-+.. ...+++++||++.||+|+|+|+|+|+.+|..+|+.++..+.+|+|.||+....+ ......+.+++|
T Consensus 169 sh~l~~~Rv~~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~~~~~~~~~ 248 (475)
T COG0769 169 SHGLVQGRVEGVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNALGDYITYG 248 (475)
T ss_pred hhHHHhCCccCceEEEEeccccCchhhcccCcHHHHHHHHHHHHhhcCCCccEEEccCCchHHHHHHHHHhcCCCEEEeC
Confidence 9887655543 477999999999999999999999999999999866778899999999998443 333444677887
Q ss_pred cCCCce------eccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCC
Q 017969 184 AFPGVK------IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257 (363)
Q Consensus 184 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~g 257 (363)
.+.+.. ++....+..+.+...+.. ..+.+|++|.||++|+++|+ +++..+|+|+++|+++|+++++++|
T Consensus 249 ~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~---~~~~~~L~G~fNv~NaLaA~--a~~~~lG~~~e~i~~~l~~~~~v~G 323 (475)
T COG0769 249 CDFKRPDLDYRGIEESSSGSDFVFEPSGGI---GEYELPLPGLFNVYNALAAV--AAALALGVDLEDILAGLETLKPVPG 323 (475)
T ss_pred CCCchhhhhhccceeeeccceeEEEccCCc---eeEeccccchhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCCC
Confidence 653211 111111122222222222 23589999999999999999 8899999999999999999999999
Q ss_pred eeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchhhhhhhcc-cCcEEEEEccc
Q 017969 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITVCAL 333 (363)
Q Consensus 258 R~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~-~~~~vi~~G~~ 333 (363)
|||.+. .++..++.| |||||++++++|+.++ .+++++|+|+-++. |.+.+. .++.... ..|.++++-++
T Consensus 324 RmE~v~--~~~~~v~VD-yAHnPd~le~~L~~~~~~~~g~li~VfG~gGDr-D~~kr~---~mg~ia~~~ad~vivt~dn 396 (475)
T COG0769 324 RMELVN--IGGKLVIVD-YAHNPDGLEKALRAVRLHAAGRLIVVFGCGGDR-DKSKRP---DMGAIAEQLADIVIVTSDN 396 (475)
T ss_pred cceEec--CCCCeEEEE-eccChHHHHHHHHHHHhhcCCcEEEEECccCCC-Cccccc---chHHHHHhcCCcEEEcCCC
Confidence 999996 447788888 5999999999999885 46899999988887 666433 3444433 35677777543
No 40
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=4e-39 Score=315.48 Aligned_cols=276 Identities=18% Similarity=0.153 Sum_probs=190.8
Q ss_pred eeeHHHHHHhhCC---CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc------------cchhhhhhhhhc---
Q 017969 28 VMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHC--- 89 (363)
Q Consensus 28 ~l~~~~~~~~~~~---~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn------------ig~p~~~~~~~~--- 89 (363)
-+.++..+.+.++ ++.++||||||||||||+.||+++|+++|++++++++ .|.+++...+..
T Consensus 31 ~l~~~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~~ 110 (416)
T PRK10846 31 GLERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASFA 110 (416)
T ss_pred ChHHHHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCceEECCCCCCCcceEEEECCEECCHHHHHHHHH
Confidence 3555555554432 3567999999999999999999999999999988775 244443221110
Q ss_pred ----------cc----------CCCCCCCCcEEEEEeC-cccccccCccccccEEEEeCCChhhhccCC-CHHHHHHHHH
Q 017969 90 ----------IA----------LPSSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKC 147 (363)
Q Consensus 90 ----------~~----------~~~~~~~~d~~VlE~g-~~~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~K~ 147 (363)
++ ....+.++|++|+|+| +|++|.++. ++|+++|||||++||+++|| |+|+|+++|+
T Consensus 111 ~~~~~~~~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglggrld~tn~-i~p~vaviTnI~~DHld~lG~t~e~ia~~Ka 189 (416)
T PRK10846 111 EIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNI-VDADVAVVTSIALDHTDWLGPDRESIGREKA 189 (416)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCCchhhhc-cCCCEEEECCccHHHHHHhcCCHHHHHHHHH
Confidence 00 0023567899999999 679999887 79999999999999999999 8999999999
Q ss_pred HhcccCCCCcEEEEeCCC-hh-HHHHHhcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHH
Q 017969 148 HLFSHMVNTKLGLLPFGN-QH-LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHN 225 (363)
Q Consensus 148 ~i~~~~~~~~~~v~n~dd-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~N 225 (363)
+|++. ++.+|+|.+| +. ....+.....++..++.. +.+.... ..+.+..... . ...++++ .||++|
T Consensus 190 ~Iik~---~~~~V~~~~d~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~--~--~~~~~l~-~~~~~N 257 (416)
T PRK10846 190 GIFRA---EKPAVVGEPDMPSTIADVAQEKGALLQRRGVD--WNYSVTD--HDWAFSDGDG--T--LENLPLP-NVPLPN 257 (416)
T ss_pred hhhcC---CCeEEECCccHhHHHHHHHHHhCCcEEEecce--eeeeccC--ceEEEecCcc--c--cccCCcc-chHHHH
Confidence 99983 6788998766 33 223344344444443321 1111000 1122211110 1 1235565 479999
Q ss_pred HHHHHHHHHHHH--cCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcc---c-CCcEEEEE
Q 017969 226 AAVAALSVLGLD--IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---K-GHKCVILL 299 (363)
Q Consensus 226 al~A~~~a~~~~--lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~---~-~~~~i~Il 299 (363)
+++|+ +++.. ++++.++|+++|++++ +|||||++. . ...+|+|+ ||||+|++++++.+ . ++|+++|+
T Consensus 258 ~~~Ai--a~~~~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~-~~~iI~D~-AHNp~a~~~l~~~L~~~~~~~~ii~Vf 330 (416)
T PRK10846 258 AATAL--AALRASGLEVSEQAIRDGIASAI-LPGRFQIVS--E-SPRVILDV-AHNPHAAEYLTGRLKALPKNGRVLAVI 330 (416)
T ss_pred HHHHH--HHHHHcCCCCCHHHHHHHHHhCC-CCceEEEEc--C-CCcEEEEC-CCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99999 56644 5799999999999999 699999995 2 33588886 99999999985554 3 35789999
Q ss_pred cCCCCCCCCCCccchhhhhhhcc-cCcEEEEE
Q 017969 300 GGQAKVLNGQESNGFEKLIEPLN-HHRCVITV 330 (363)
Q Consensus 300 G~~~~~g~~~~~~~~~~l~~~l~-~~~~vi~~ 330 (363)
|.++++ ++..+...+. ..+.++++
T Consensus 331 g~~gdk-------d~~~~l~~L~~~~d~viv~ 355 (416)
T PRK10846 331 GMLHDK-------DIAGTLACLKSVVDDWYCA 355 (416)
T ss_pred EeeCCC-------CHHHHHHHHhhhCCEEEEE
Confidence 977654 3555555554 46666554
No 41
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=1.4e-36 Score=298.83 Aligned_cols=258 Identities=21% Similarity=0.247 Sum_probs=190.1
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc------------cchhhhhhhhh--------cc--cC------C
Q 017969 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFH--------CI--AL------P 93 (363)
Q Consensus 42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn------------ig~p~~~~~~~--------~~--~~------~ 93 (363)
+.++|+||||||||||++|+++||++.|++++++++ .|.|++...+. ++ .. +
T Consensus 60 ~l~vIhVaGTnGKGSt~a~l~siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~f~~v~~~l~~~~~~~~~~p 139 (530)
T PLN02881 60 RLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCWDRLKEKTTEDLPMP 139 (530)
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHHHHHHHHHHHHhcccccCCC
Confidence 567999999999999999999999999999988877 35666653221 11 00 1
Q ss_pred -------------CCCCCCcEEEEEeC-cccccccCccccccEEEEeCCChhhhccCC-CHHHHHHHHHHhcccCCCCcE
Q 017969 94 -------------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKL 158 (363)
Q Consensus 94 -------------~~~~~~d~~VlE~g-~~~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~~ 158 (363)
+.+.++|++|+|+| .|++|.++.+.+|+++|||||+.||+++|| |+|+|+.+|++|++ ++.+
T Consensus 140 t~Fe~lTlla~~~F~~~~vD~aVlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tle~IA~~KagI~k---~g~p 216 (530)
T PLN02881 140 AYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTLGKIAGEKAGIFK---PGVP 216 (530)
T ss_pred cHHHHHHHHHHHHHHhCCCCEEEEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCHHHHHHHHHHHHh---cCCC
Confidence 12567899999999 578999987558999999999999999999 99999999999998 5777
Q ss_pred EEEeCCChhHHHHH----hcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHH
Q 017969 159 GLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (363)
Q Consensus 159 ~v~n~dd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~ 234 (363)
+|...+.+....+. .+...++..++.. + .+. +....+++.|.||..|+++|+ ++
T Consensus 217 ~vt~~q~~ea~~vl~~~A~e~~a~l~~v~~~-------~----~~~---------~~~~~l~L~G~~Q~~NaalAl--a~ 274 (530)
T PLN02881 217 AFTVPQPDEAMRVLEERASELGVPLQVVEPL-------D----SYG---------LSGLKLGLAGEHQYLNAGLAV--AL 274 (530)
T ss_pred EEEeCCChHHHHHHHHHHHHhCCcEEEeccc-------c----cce---------ecccCCCCCChhHHHhHHHHH--HH
Confidence 77766666654443 2233344333211 0 001 112368899999999999999 55
Q ss_pred HHHc---------------CCCHHHHHHHhhcCCCCCCeeEEEEe------ecCCEEEEEcCCCCCHHHHHHHHhccc--
Q 017969 235 GLDI---------------GVDVEALNSTIEILRTPPHRMQIVHR------DIQGVTWVDDSKATNLEATCTGLMDLK-- 291 (363)
Q Consensus 235 ~~~l---------------gi~~~~i~~~l~~~~~~~gR~e~~~~------~~~~~~iidD~~a~np~s~~~al~~~~-- 291 (363)
+..+ ...++.+++||+++.| |||||++.. ..+++.+|.|. ||||+|++++.++|.
T Consensus 275 ~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~~w-pGR~e~v~~~~~~~~~~~~~~~~LDG-AHNp~s~~~l~~wf~~~ 352 (530)
T PLN02881 275 CSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTASL-QGRAQVVPDSYINSEDSGDLVFYLDG-AHSPESMEACARWFSSA 352 (530)
T ss_pred HHHHHhhccccccccccccCCCHHHHHHHHHhCCC-CceEEEeccccccccCCCCCeEEEEC-CCCHHHHHHHHHHHHHH
Confidence 5543 2345689999999997 999999951 01456789896 999999999888762
Q ss_pred ---C-------------------------CcEEEEEcCCCCCCCCCCccchhhhhhhc----c----cCcEEEEEccc
Q 017969 292 ---G-------------------------HKCVILLGGQAKVLNGQESNGFEKLIEPL----N----HHRCVITVCAL 333 (363)
Q Consensus 292 ---~-------------------------~~~i~IlG~~~~~g~~~~~~~~~~l~~~l----~----~~~~vi~~G~~ 333 (363)
. +++++|+|.|.++ +...+.+.| . ..|.++++-..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF~~~~dk-------D~~~lL~~L~~~~~~~~~~f~~aiF~~n~ 423 (530)
T PLN02881 353 IKGDEQSPGSGYGPHGGGGKSEDTESNKISEQILLFNCMSVR-------DPQLLLPPLANTCASNGVPFKKALFVPNI 423 (530)
T ss_pred hcccccCCcccccccccccccccccccCCCCEEEEEcCCCCC-------CHHHHHHHHHHHHHhcCCCCCeEEEcCCc
Confidence 1 2689999998875 344555544 2 36788777654
No 42
>PRK14016 cyanophycin synthetase; Provisional
Probab=100.00 E-value=8.3e-34 Score=293.46 Aligned_cols=250 Identities=18% Similarity=0.197 Sum_probs=178.2
Q ss_pred ccccCCCc-HHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhh
Q 017969 8 LLEFQLKA-TGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86 (363)
Q Consensus 8 ~~~~~~~~-p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~ 86 (363)
+|+++..+ |...++++.+.+++..+..... +.+.|+|+||||||||||++||+++|+..|.++++.++.|..+....
T Consensus 446 sPgi~~~~~p~~g~~r~v~~~Iid~L~~~~~--~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~~ 523 (727)
T PRK14016 446 APGLRMHLAPSEGKPRNVGEAIVDMLFPEGD--DGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRL 523 (727)
T ss_pred CcchhhccCCCCCcchhHHHHHHHHhcccCC--CCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCEE
Confidence 55665543 6666666666667666432222 13578999999999999999999999999999988888765442111
Q ss_pred hh--------cccCCCCCCCCcEEEEEeCcccccc-cCccccccEEEEeCCChhhhccCC--CHHHHHHHHHHhcccCCC
Q 017969 87 FH--------CIALPSSKPKFQVAVVEVSSYQMEI-PNKYFCPTVSVVLNLTPDHLERHK--TMKNYALTKCHLFSHMVN 155 (363)
Q Consensus 87 ~~--------~~~~~~~~~~~d~~VlE~g~~~l~~-~~~~~~p~i~viTnI~~dHl~~~g--t~e~~~~~K~~i~~~~~~ 155 (363)
.. ....-...++.|++|+|+|++++.. ...+.+|+++|||||++||+++++ |+|+|+.+|+.+++.+++
T Consensus 524 i~~gd~t~p~s~~~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~~ 603 (727)
T PRK14016 524 IDKGDCTGPKSARRVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVKP 603 (727)
T ss_pred eccccccCHHHHHHHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhCC
Confidence 00 0000012456799999999987743 233468999999999999999885 999999999999998888
Q ss_pred CcEEEEeCCChhHHHHHhcCCccEEEeccCCCcee-----ccccc-----cceEEEecCCeEE---EEEeeccCCCc--h
Q 017969 156 TKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI-----DTEAK-----TASFEVPAVGVVS---QLQLHNMKVMG--R 220 (363)
Q Consensus 156 ~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~---~~~~~~l~l~G--~ 220 (363)
++.+|+|.||+.+..+...++.++++|+.+++..+ ..... ...+.+..++... .+..+.+.++| .
T Consensus 604 ~g~aVlNaDD~~~~~~~~~~~~~vi~fs~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~i~l~~~G~~~ 683 (727)
T PRK14016 604 DGYAVLNADDPMVAAMAERCKGKVIFFSMDPDNPVIAEHRAQGGRAVYVEGDYIVLAEGGWEIRIISLADIPLTLGGKAG 683 (727)
T ss_pred CCeEEEcCCCHHHHHHHHhCCCcEEEEeCCCCChHHHHHHHhCCceEEEeCCEEEEEeCCcceeeccccccceecCCcch
Confidence 99999999999998887766677888886532110 00100 0111111111111 11123444477 7
Q ss_pred hHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----CCCeeEE
Q 017969 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT----PPHRMQI 261 (363)
Q Consensus 221 h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~----~~gR~e~ 261 (363)
||++|+++|+ |+++.+|++++.|+++|++|++ .||||+.
T Consensus 684 hnv~NalAAi--Aaa~~lGi~~~~I~~~L~sF~~~~~~~pGR~n~ 726 (727)
T PRK14016 684 FNIENALAAI--AAAWALGIDIELIRAGLRTFVSDAAQAPGRFNL 726 (727)
T ss_pred hhHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCccCCCccccc
Confidence 9999999999 8999999999999999999996 8999985
No 43
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=100.00 E-value=1.7e-32 Score=240.50 Aligned_cols=176 Identities=25% Similarity=0.350 Sum_probs=134.2
Q ss_pred EeCCCChHHHHHHHHHHHHhcCCCeEeecc----cchhhhhhhhhcccCCCCCCCCcEEEEEeCcccccc--cCcccccc
Q 017969 48 VTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI--PNKYFCPT 121 (363)
Q Consensus 48 VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn----ig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~--~~~~~~p~ 121 (363)
||||||||||++||+++|+.+|.++++.|| +|.+....... +.+.|++|+|+|++++.. ....++|+
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~V~E~~~~~~~~~~l~~~~~p~ 73 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNTNNQIGLPLLLLNAR-------EGGADIAVLEVSEGGLGDERLSFLLKPD 73 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEEEEESSCHHHHHHHHHHHHHH-------HTTSSEEEEEESSSCCCTSTTSGGSBES
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHhhhc-------ccccceeeeeccCCccccceeeeeeehh
Confidence 899999999999999999999999998888 56555544432 357899999999884443 33337999
Q ss_pred EEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCccEEEeccCCCceec-----ccccc
Q 017969 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TEAKT 196 (363)
Q Consensus 122 i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 196 (363)
++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||.+.........++++|+.+.+.++. ....+
T Consensus 74 i~viTni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n~dd~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~ 153 (188)
T PF08245_consen 74 IAVITNIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLNADDPELAEIAANSKCKVITFGLDNSADIRASNISYSEEG 153 (188)
T ss_dssp EEEE----SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEETTSHHHHHHHHHHTTTEEEEESSSSSEEEEEEEEEETTE
T ss_pred eeeeceecccccccCCCHHHHHHHHHhhhhhcccceEEEecCCCHHHHHHHHhcCCcEEEeccCcccceeeeeEEEecCC
Confidence 9999999999999999999999999999999998999999999998877777677779999986544221 11122
Q ss_pred ceEEEe-cCCeEEEEEeeccCCCchhHHHHHHHHHHHHHH
Q 017969 197 ASFEVP-AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235 (363)
Q Consensus 197 ~~~~~~-~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~ 235 (363)
..+.+. ..+...+ +.++++|.||++|+++|+ ++|
T Consensus 154 ~~~~i~~~~~~~~~---~~~~l~G~hn~~NalaA~--a~a 188 (188)
T PF08245_consen 154 GRFRIISYNGEEFE---IELPLPGKHNVENALAAI--AAA 188 (188)
T ss_dssp EEEEEEEETTEEEE---EEESSSSHHHHHHHHHHH--HHH
T ss_pred cEEEEEEecCceEE---EEecCCCHHHHHHHHHHH--HhC
Confidence 333222 2333333 589999999999999999 554
No 44
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=99.97 E-value=6.6e-31 Score=249.31 Aligned_cols=248 Identities=23% Similarity=0.263 Sum_probs=180.8
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc------------cchhhhhhhhhcc----------------cCC
Q 017969 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHCI----------------ALP 93 (363)
Q Consensus 42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn------------ig~p~~~~~~~~~----------------~~~ 93 (363)
+..+|||+|||||+||++++.+||+++|++++.+++ .|.|++...+..+ .++
T Consensus 71 ~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~p 150 (496)
T KOG2525|consen 71 SLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSMP 150 (496)
T ss_pred heeEEEEecCCCCcchHHHHHHHHHhcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCCC
Confidence 578999999999999999999999999999977665 4777765543211 001
Q ss_pred -------------CCCCCCcEEEEEeCc-ccccccCccccccEEEEeCCChhhhccCC-CHHHHHHHHHHhcccCCCCcE
Q 017969 94 -------------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKL 158 (363)
Q Consensus 94 -------------~~~~~~d~~VlE~g~-~~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~~ 158 (363)
+...++|++|+|+|. |++|.++++-+|-++.||+||.||++++| |+++|+.+|++||+ .+.+
T Consensus 151 ~yF~fLT~lAF~~F~~enVdvaViEvGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK---~gvp 227 (496)
T KOG2525|consen 151 TYFEFLTLLAFHVFVKENVDVAVIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFK---EGVP 227 (496)
T ss_pred chhhhhHhhhheeeeecCCcEEEEEeccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhccccc---cCCc
Confidence 246789999999995 68999999778999999999999999999 99999999999999 4666
Q ss_pred EEEeCCChhHHHHHhcC-Cc-cEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHH
Q 017969 159 GLLPFGNQHLNEAIKGH-RF-NLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236 (363)
Q Consensus 159 ~v~n~dd~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~ 236 (363)
++.-...+......... .. .+..+-.. .....++....+.+.|.||..|+..|+ .++.
T Consensus 228 aft~~q~~e~~nvL~~ra~e~~~~L~~v~------------------p~~~~~ls~~~lgl~g~hq~~na~lA~--~L~~ 287 (496)
T KOG2525|consen 228 AFTVPQPPEALNVLKERASELGVPLFVVP------------------PLEAYELSGVNLGLIGTHQWSNASLAV--QLAS 287 (496)
T ss_pred eEEcCCcHHHHHHHHHHHHhcCCCceecC------------------CchhhhhcCCcccccccchhhhhHHHH--HHHH
Confidence 66655666665554321 11 11000000 000001112347789999999999998 4443
Q ss_pred Hc-----------------C--CCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc------
Q 017969 237 DI-----------------G--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK------ 291 (363)
Q Consensus 237 ~l-----------------g--i~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~------ 291 (363)
.. + +++. ...||.++.| |||.|++. ..++++++.|. |||++||+++.+.++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~l~GL~~~~w-PGR~qil~-~~~~~~~llDG-AHt~eSaea~~~w~~~~~~~~ 363 (496)
T KOG2525|consen 288 EWLIQNGRVAEGVLDALQTSGLIPPA-FLSGLASTDW-PGRLQILE-YGRGVTWLLDG-AHTKESAEACAKWFRKAVRGL 363 (496)
T ss_pred HHHHhcCcccccCCCccccccCCCHH-HhcchhhccC-CCceEEEe-cCCCcEEEecC-CCCHHHHHHHHHHHHHHhccC
Confidence 21 2 4444 4569999998 99999996 34778899996 999999999988773
Q ss_pred -CCc-EEEEEcCCCCCCCCCCccchhhhhhhccc
Q 017969 292 -GHK-CVILLGGQAKVLNGQESNGFEKLIEPLNH 323 (363)
Q Consensus 292 -~~~-~i~IlG~~~~~g~~~~~~~~~~l~~~l~~ 323 (363)
+.+ +|+++..+.+.. ...+...+++
T Consensus 364 ~~~~~~illfn~t~~~d-------~~~Ll~~L~~ 390 (496)
T KOG2525|consen 364 KKLTSLILLFNCTSDRD-------PPLLLPLLKP 390 (496)
T ss_pred CCccceEEEEEecCCcc-------hHhHhHHhcc
Confidence 222 588999998864 4456666655
No 45
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=99.33 E-value=2.6e-12 Score=98.91 Aligned_cols=77 Identities=22% Similarity=0.231 Sum_probs=61.0
Q ss_pred CCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcc----cCCcEEEEEcCCCCCCCCCCccchhhhhhhccc-CcEEEE
Q 017969 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVIT 329 (363)
Q Consensus 255 ~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~----~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~~-~~~vi~ 329 (363)
+|||||++. ..+++++|+| |||||+|++++++.+ +++++++|+|.|.++|... ...+..+++.++. .+.+++
T Consensus 1 vpgR~e~v~-~~~~~~vi~D-~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~-~~~~~~~~~~~~~~~d~vi~ 77 (91)
T PF02875_consen 1 VPGRMEVVR-EPNGPTVIDD-YAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKD-KDFHEEIGELAAQLADVVIL 77 (91)
T ss_dssp ETTSSEEEE-EETTEEEEEE-T--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSH-HHCHHHHHHHHTTCSSEEEE
T ss_pred CCCCcEEEe-eCCCcEEEEE-CCCCHHHHHHHHHHHHHhccCCcEEEEEcccccccccc-HHHHHHHHHHHHhcCCEEEE
Confidence 489999997 4689999999 799999999999988 3578999999999866544 2346788888876 778999
Q ss_pred Ecccc
Q 017969 330 VCALL 334 (363)
Q Consensus 330 ~G~~~ 334 (363)
+|+..
T Consensus 78 ~~~~~ 82 (91)
T PF02875_consen 78 TGDNP 82 (91)
T ss_dssp ETSBT
T ss_pred cCCCC
Confidence 98874
No 46
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.46 E-value=0.025 Score=52.30 Aligned_cols=117 Identities=17% Similarity=0.242 Sum_probs=74.1
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEe----------eccc-chhhhhhhhh---c-----ccCC-------
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV----------GGNL-GNPLSEAAFH---C-----IALP------- 93 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~----------~gni-g~p~~~~~~~---~-----~~~~------- 93 (363)
+.++|||||+ .||||...-|..-|.+.|.+++. +|++ |.-+-...+. . +.+.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 5679999997 67999999999999999998864 2331 2111111000 0 0000
Q ss_pred ---------CCCCCCcEEEEEeC-cccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeC
Q 017969 94 ---------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (363)
Q Consensus 94 ---------~~~~~~d~~VlE~g-~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~ 163 (363)
.....+|+.++|.. .||-+..-. --.|..+++.+.. .=+++...|+++++- .+..|+|.
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~-~~aDt~~~v~~pg-------~GD~~Q~iK~GimEi---aDi~vINK 198 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEVDIA-NMADTFLVVMIPG-------AGDDLQGIKAGIMEI---ADIIVINK 198 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchhHHh-hhcceEEEEecCC-------CCcHHHHHHhhhhhh---hheeeEec
Confidence 02456899999987 477664322 2346666655532 224556778888884 78999999
Q ss_pred CChhHH
Q 017969 164 GNQHLN 169 (363)
Q Consensus 164 dd~~~~ 169 (363)
.|..-.
T Consensus 199 aD~~~A 204 (323)
T COG1703 199 ADRKGA 204 (323)
T ss_pred cChhhH
Confidence 885544
No 47
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.25 E-value=0.45 Score=45.34 Aligned_cols=114 Identities=17% Similarity=0.115 Sum_probs=67.2
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeecc-cchhhhhh-------hhhcc--------c---CC------
Q 017969 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN-LGNPLSEA-------AFHCI--------A---LP------ 93 (363)
Q Consensus 41 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~gn-ig~p~~~~-------~~~~~--------~---~~------ 93 (363)
.+..+|+|||+ .||||++..+...|+..|.+++..+. ...+.+.. ....+ . ..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 35669999995 58999999999999999988864433 12221100 00000 0 00
Q ss_pred ----------CCCCCCcEEEEEeCc-ccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEe
Q 017969 94 ----------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (363)
Q Consensus 94 ----------~~~~~~d~~VlE~g~-~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n 162 (363)
....+.|+.++|... ++-+ ....-..|+.++..- -++-+++...|.++++. .+.+|+|
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~-~~i~~~aD~vlvv~~-------p~~gd~iq~~k~gi~E~---aDIiVVN 202 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQSE-TAVAGMVDFFLLLQL-------PGAGDELQGIKKGIMEL---ADLIVIN 202 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCccch-hHHHHhCCEEEEEec-------CCchHHHHHHHhhhhhh---hheEEee
Confidence 013457889999874 3322 222234566555511 23555666667767663 4688999
Q ss_pred CCC
Q 017969 163 FGN 165 (363)
Q Consensus 163 ~dd 165 (363)
.-|
T Consensus 203 KaD 205 (332)
T PRK09435 203 KAD 205 (332)
T ss_pred hhc
Confidence 877
No 48
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.70 E-value=0.11 Score=45.41 Aligned_cols=27 Identities=37% Similarity=0.664 Sum_probs=24.6
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCC
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIE 71 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~ 71 (363)
+|+|+| ..||||++..|...|.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 689999 789999999999999988865
No 49
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.63 E-value=0.78 Score=34.12 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=24.1
Q ss_pred EEEeCC--CChHHHHHHHHHHHHhcCCCeEe
Q 017969 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 46 I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
|.++|. .||||++..++..|++.|.++..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~ 32 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLL 32 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 566655 69999999999999999888743
No 50
>PRK15453 phosphoribulokinase; Provisional
Probab=91.87 E-value=0.29 Score=45.30 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=24.4
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHhcC
Q 017969 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLG 69 (363)
Q Consensus 41 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g 69 (363)
++.++|+|||+ .||||++..++++|...+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~ 33 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRREN 33 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 46789999996 579999999999987554
No 51
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=91.16 E-value=0.28 Score=44.25 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=29.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 45 vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
+|+|+|.-||||+..-|+.-|+..|+++.+.++
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTT 33 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTT 33 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECC
Confidence 589999999999999999999999998865443
No 52
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=89.88 E-value=0.48 Score=40.17 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=31.4
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeecccch
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~gnig~ 80 (363)
.++++|+|. .||||...=|-..|++.|+++++.-.-+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 479999995 69999999999999999999966544333
No 53
>PRK06696 uridine kinase; Validated
Probab=89.85 E-value=0.81 Score=40.89 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=28.4
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
....+|+|+| ..||||.+..|...|...|..+..
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~ 55 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIR 55 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 3567999999 789999999999999988765543
No 54
>PRK07667 uridine kinase; Provisional
Probab=89.14 E-value=1.1 Score=39.00 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=26.7
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
...+|||+| ..||||++..|...|...|.++
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~ 48 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPF 48 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcE
Confidence 346999999 6899999999999999887665
No 55
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=89.05 E-value=0.62 Score=45.44 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=29.9
Q ss_pred CCcEEEEe---CCCChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+.++|+|+ |-.|||||+.-|++.|...|+++.+.
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlI 141 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLI 141 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 46799999 88899999999999999999998544
No 56
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=88.80 E-value=0.65 Score=45.60 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=29.7
Q ss_pred CCcEEEEe---CCCChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+.++|+|+ |-.|||||+.-|++.|...|+++.+.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 34789999 88899999999999999999998643
No 57
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=88.79 E-value=0.66 Score=41.48 Aligned_cols=32 Identities=34% Similarity=0.433 Sum_probs=28.2
Q ss_pred CcEEEEeCCC---ChHHHHHHHHHHHHhcCCCeEe
Q 017969 43 IKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 43 ~~vI~VTGTn---GKTTT~~~l~~iL~~~g~~~~~ 74 (363)
.+.+-||||. |||.+++.|.+.|+++|+++..
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~ 36 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAG 36 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEE
Confidence 3688999986 9999999999999999998753
No 58
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=88.69 E-value=0.66 Score=44.07 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=30.2
Q ss_pred CCcEEEE----eCCCChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~V----TGTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+.|+|.| .|-.|||+++.+|...|++.|.+++..
T Consensus 48 ~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~il 85 (325)
T PRK00652 48 PVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVV 85 (325)
T ss_pred CCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 4678988 899999999999999999999998654
No 59
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=88.51 E-value=0.66 Score=45.30 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=30.1
Q ss_pred CCcEEEEe---CCCChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+.++|+|+ |-.|||||+.-|++.|...|+++.+.
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI 141 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 45799999 89999999999999999999998554
No 60
>PHA02518 ParA-like protein; Provisional
Probab=88.40 E-value=0.75 Score=40.27 Aligned_cols=30 Identities=37% Similarity=0.496 Sum_probs=24.7
Q ss_pred EEEEe---CCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 45 vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
+|+|+ |-.||||++..|+..|...|.++.+
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vll 34 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLL 34 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 45554 6778999999999999999988854
No 61
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=88.32 E-value=1.1 Score=39.24 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=27.7
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEe
Q 017969 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 42 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
+.++|+||++ .||||++..|+..|...|.++.+
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVll 51 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLL 51 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 5789999954 47999999999999999987743
No 62
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=88.30 E-value=1.1 Score=41.22 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=29.2
Q ss_pred CCCcEEEEe---CCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 41 ~~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
+..++|+|| |.-||||++..|+..|...|.++.+
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~Vll 137 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLL 137 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 467899999 6779999999999999999988743
No 63
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=87.76 E-value=0.87 Score=40.27 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=24.9
Q ss_pred EEEEe--CCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 45 vI~VT--GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
+|+|+ |-.|||||+.-|++.|.+.|+++..
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLl 33 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQ 33 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEE
Confidence 45555 4779999999999999999998753
No 64
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=87.68 E-value=3.3 Score=34.51 Aligned_cols=107 Identities=18% Similarity=0.177 Sum_probs=61.5
Q ss_pred EEEeC--CCChHHHHHHHHHHHHhcCCCeEeecc-cchhhh------hh-hhhc------c---cCC-------------
Q 017969 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN-LGNPLS------EA-AFHC------I---ALP------------- 93 (363)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~gn-ig~p~~------~~-~~~~------~---~~~------------- 93 (363)
|++.| -.||||+...+...+...|.++..... .+.+.. .. .++. + ..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATP 81 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhHH
Confidence 55665 468999999999999999887754221 111110 00 0000 0 000
Q ss_pred -----CCCCCCcEEEEEeCcccccc-cCcccccc-EEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCC
Q 017969 94 -----SSKPKFQVAVVEVSSYQMEI-PNKYFCPT-VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164 (363)
Q Consensus 94 -----~~~~~~d~~VlE~g~~~l~~-~~~~~~p~-i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~d 164 (363)
....++|+.++++ .|.... .......| +.|+|+-. -.+.|+--|..+++ ..+.+++|.-
T Consensus 82 ~~~~~~~~~~~D~iiIDt-aG~~~~~~~~~~~Ad~~ivv~tpe--------~~D~y~~~k~~~~~---~~~~~~~~k~ 147 (148)
T cd03114 82 EVIRVLDAAGFDVIIVET-VGVGQSEVDIASMADTTVVVMAPG--------AGDDIQAIKAGIME---IADIVVVNKA 147 (148)
T ss_pred HHHHHHHhcCCCEEEEEC-CccChhhhhHHHhCCEEEEEECCC--------chhHHHHhhhhHhh---hcCEEEEeCC
Confidence 0123678999999 442111 11112233 56777655 24788999998888 4788888853
No 65
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=87.62 E-value=0.73 Score=40.96 Aligned_cols=37 Identities=32% Similarity=0.540 Sum_probs=29.8
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhcCCCeEeec-ccch
Q 017969 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGG-NLGN 80 (363)
Q Consensus 44 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~g-nig~ 80 (363)
++|.|| |-.|||||++-|...|...|.++.+.- .+|.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGL 43 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGL 43 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCc
Confidence 578887 678999999999999999999986543 3443
No 66
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=87.51 E-value=0.89 Score=40.91 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=28.3
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
++|+|+| -.||||++.-|...|+..|+++++.
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi 35 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATA 35 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 6899999 7899999998999999999988765
No 67
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=87.12 E-value=0.96 Score=37.38 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=25.2
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
|+|+|.| -.||||.+..|-.-|.++|++++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i 34 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI 34 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence 5788888 5699999999999999999988643
No 68
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=87.10 E-value=0.9 Score=39.18 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=24.2
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
+|+|+| ..||||.+..|...|...|.++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~ 31 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPV 31 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 478888 57999999999999998776553
No 69
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=86.88 E-value=0.4 Score=47.99 Aligned_cols=122 Identities=23% Similarity=0.221 Sum_probs=73.4
Q ss_pred CcHHHHHHHhcC-CceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCe-Eeecccchhhhhhhhhccc
Q 017969 14 KATGLACLLQSG-KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-FVGGNLGNPLSEAAFHCIA 91 (363)
Q Consensus 14 ~~p~l~~a~~~~-~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~-~~~gnig~p~~~~~~~~~~ 91 (363)
.+-....|.++| +.++.+.+. .......++|.|+||+||++++++....+.....++ +..|+.|..-....+....
T Consensus 36 g~~~~~~a~~~Gavav~~~~~~--~~~~~~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~ 113 (475)
T COG0769 36 GHDFIAGAIAPGAVAVVVEKDI--KLAEAGVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQIL 113 (475)
T ss_pred cccchHhHhhCCCEEEEecccc--cccccCCCEEEEcCcHHHHHHHHHHhccCcccCceEEEEcCCCcHHHHHHHHHHHH
Confidence 355556777777 445666554 112134569999999999999999999997743443 4445555433222111111
Q ss_pred CCCCCCCCcEEEEEeCc---ccccccCccccccEEEEeCCChhhhccCCCH
Q 017969 92 LPSSKPKFQVAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139 (363)
Q Consensus 92 ~~~~~~~~d~~VlE~g~---~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~ 139 (363)
. .......++..|.-. +..+ ......|+...++|+..|++|..++.
T Consensus 114 ~-~~g~~~~~~gT~g~~~~~~~~~-~~~~tTP~~~~l~~~~~~~~d~~~e~ 162 (475)
T COG0769 114 K-KLGKKTALIGTEGDELSPGILE-PTGLTTPEALDLQNLLRDLLDRGAEI 162 (475)
T ss_pred H-hcCCceEEEEEEeeeccCCccc-ccCCCCccHHHHHHHHHHHHHcCCcE
Confidence 1 112334455555532 2333 22236899999999999999988743
No 70
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=86.74 E-value=0.63 Score=39.76 Aligned_cols=26 Identities=38% Similarity=0.681 Sum_probs=19.7
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHHHhcCCCeE
Q 017969 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 44 ~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~ 73 (363)
+.|+||||- ||||++..|+ ..|+++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~----~lg~~~i 28 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR----ELGYKVI 28 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH----HhCCcee
Confidence 369999985 7999998877 4466663
No 71
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=86.59 E-value=0.92 Score=41.77 Aligned_cols=26 Identities=35% Similarity=0.577 Sum_probs=22.2
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhcCC
Q 017969 45 ILAVTGT--NGKSTVVTFVGQMLNHLGI 70 (363)
Q Consensus 45 vI~VTGT--nGKTTT~~~l~~iL~~~g~ 70 (363)
+|+|||+ .||||++.-+.++|...|.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~ 28 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGI 28 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 5899995 6899999999999987664
No 72
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=86.50 E-value=1.1 Score=41.35 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=26.9
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHhcCCCeEee
Q 017969 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 44 ~vI~VT--GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
++|+|+ |-.|||||+.-|+..|.+.|+++.+.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLV 35 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence 467776 46799999999999999999998643
No 73
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=86.17 E-value=1.1 Score=43.56 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=28.8
Q ss_pred CCcEEEEe---CCCChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+.++|+|+ |-.|||||+.-|++.|...|+++.+.
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 139 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAI 139 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 45789887 57799999999999999999988643
No 74
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=85.90 E-value=0.76 Score=41.70 Aligned_cols=29 Identities=28% Similarity=0.404 Sum_probs=24.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhcCCCeE
Q 017969 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 45 vI~VTGTnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
++++.|-.||||++.-|++.|...|.+|-
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~~Vl 34 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGESVL 34 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 45566778999999999999999998874
No 75
>PRK05439 pantothenate kinase; Provisional
Probab=85.87 E-value=1.6 Score=41.26 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=22.9
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhc
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHL 68 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~ 68 (363)
...+|||||+ .||||++..|..+|...
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4558999995 67999999999999764
No 76
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=85.86 E-value=1.3 Score=41.11 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=27.3
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
++|+|+| ..||||.+.-|...|++.| ++++.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~I 34 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTV 34 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEE
Confidence 6899999 8899999999999999999 67543
No 77
>COG2403 Predicted GTPase [General function prediction only]
Probab=85.54 E-value=1.1 Score=42.73 Aligned_cols=32 Identities=34% Similarity=0.508 Sum_probs=28.9
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeE
Q 017969 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 42 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~ 73 (363)
..|+|+|||| .|||+++.+++++|++.|+++.
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~ 159 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVC 159 (449)
T ss_pred cCceEEEEEeccccchhHHHHHHHHHHHHcCCceE
Confidence 4689999997 6999999999999999999874
No 78
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=85.53 E-value=1.5 Score=37.03 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=27.9
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
++|+|+| -.||||....|...|...|++++..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~i 35 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVI 35 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 6899999 6799999999999999999887543
No 79
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=85.27 E-value=1.6 Score=38.52 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=26.9
Q ss_pred CCcEEEEe---CCCChHHHHHHHHHHHHh-cCCCeE
Q 017969 42 SIKILAVT---GTNGKSTVVTFVGQMLNH-LGIEAF 73 (363)
Q Consensus 42 ~~~vI~VT---GTnGKTTT~~~l~~iL~~-~g~~~~ 73 (363)
..++|+|+ |-.||||++..|++.|.. .|.++.
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VL 69 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVL 69 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 56799999 578999999999999986 587764
No 80
>COG4240 Predicted kinase [General function prediction only]
Probab=85.25 E-value=1.6 Score=39.08 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=28.1
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcC-CCeEee
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLG-IEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g-~~~~~~ 75 (363)
+.-++||.|. .||||++..|..+|.+.| .++.+.
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~l 85 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATL 85 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEe
Confidence 4558999995 789999999999999998 466443
No 81
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=85.03 E-value=0.92 Score=41.52 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.3
Q ss_pred eCCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
-|-.|||||+.-|++.|...|+++.+
T Consensus 9 KGGvGKTT~~~nLA~~La~~G~kVll 34 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMGKKVMI 34 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEE
Confidence 57889999999999999999998854
No 82
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=84.51 E-value=1.4 Score=37.07 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=26.2
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+|+|+| -.||||+...|...|+..|++++..-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 467777 46899999999999999998886544
No 83
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=84.37 E-value=1.7 Score=40.31 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=28.4
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+.++|.++|. .|||||+.-|+..|...|.++.+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4568888884 6899999999999998888776544
No 84
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=84.36 E-value=1.6 Score=39.26 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=26.8
Q ss_pred cEEEEeC---CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 44 ~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
++|+|++ -.||||++.-|+..|...|.++.+.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vlli 36 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAI 36 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 5677765 7799999999999999999988643
No 85
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=84.23 E-value=1.2 Score=38.25 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=24.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 45 vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
+.+.-|-.||||++..|+..|...|+++.+
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~Vll 32 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLL 32 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEE
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccc
Confidence 345567889999999999999999999854
No 86
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=84.09 E-value=0.96 Score=40.22 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.6
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhc
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHL 68 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~ 68 (363)
..+|||+| ..||||.+..|...|...
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 35999999 789999999999999744
No 87
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=84.09 E-value=1.6 Score=40.38 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=25.8
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VT--GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++|+|+ |-.|||||+.-|++.|.+.|+++-+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLl 34 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLV 34 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEE
Confidence 456665 4789999999999999999998854
No 88
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=83.88 E-value=2.1 Score=39.41 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=29.5
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCC--eEeecccc
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIE--AFVGGNLG 79 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~--~~~~gnig 79 (363)
..-+|||+|| .||+||+..+..+|+..+.. +.+...-|
T Consensus 81 ~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDG 122 (283)
T COG1072 81 RPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDG 122 (283)
T ss_pred CCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccc
Confidence 4458999997 58999999999999998865 43444333
No 89
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=83.79 E-value=2.3 Score=39.68 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=22.9
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhc
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~ 68 (363)
..-+|||+|.+ ||||++.+|..+|+..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 45699999965 7999999999999853
No 90
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=83.57 E-value=1.7 Score=39.83 Aligned_cols=29 Identities=34% Similarity=0.357 Sum_probs=24.4
Q ss_pred EEEe--CCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 46 LAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 46 I~VT--GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
|+|+ |-.|||||+.-|++.|...|+++.+
T Consensus 3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvll 33 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQ 33 (267)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 4444 5789999999999999999999854
No 91
>PRK14974 cell division protein FtsY; Provisional
Probab=83.47 E-value=1.9 Score=41.19 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=28.8
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+..+|.++|. .|||||..-+++.|...|.++.+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~ 175 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA 175 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 3568999995 5799999999999999988876543
No 92
>PRK00784 cobyric acid synthase; Provisional
Probab=83.26 E-value=1.4 Score=44.32 Aligned_cols=30 Identities=40% Similarity=0.479 Sum_probs=26.2
Q ss_pred cEEEEeCC---CChHHHHHHHHHHHHhcCCCeE
Q 017969 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 44 ~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~ 73 (363)
+.|-|||| .|||+++..|...|+++|++++
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~ 35 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVA 35 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEe
Confidence 46788887 8999999999999999998764
No 93
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=83.17 E-value=2.1 Score=36.76 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=29.2
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
..++|+|+| -.||||...-|...|...|++++..-
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik 41 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEE
Confidence 467999999 57999999999999999898886543
No 94
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=83.10 E-value=2.1 Score=40.81 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=30.1
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
++.++|.|+| ..||||++.-|+..|.+.|.++.+.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVlli 65 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLI 65 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4567888887 7899999999999999999988654
No 95
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=82.96 E-value=1.9 Score=40.43 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=24.9
Q ss_pred EEEE--eCCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 45 ILAV--TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 45 vI~V--TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
+|+| -|-.|||||+.-|++.|.+.|+++.+
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLl 33 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQ 33 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 4444 46889999999999999999998854
No 96
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=82.87 E-value=1.8 Score=42.61 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=29.2
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+++|+|+| -.||||...-|-..|+..|+++++.
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavI 35 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTV 35 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 36899999 7899999999999999999998763
No 97
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=82.82 E-value=2 Score=39.58 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=25.8
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VT--GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++|+|+ |-.|||||+.-|+..|.+.|+++-+
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLl 34 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMV 34 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEE
Confidence 456666 4677999999999999999999854
No 98
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=82.74 E-value=3.9 Score=35.13 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=32.0
Q ss_pred eeHHHHHHhhCCCCCcEEEEeC--CCChHHHHHHHHHHHHhcCCC
Q 017969 29 MSELDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIE 71 (363)
Q Consensus 29 l~~~~~~~~~~~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~ 71 (363)
++..+...++. +...+|.++| ..||||++..|...|...|..
T Consensus 5 ~~~~~~~~~~~-~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~ 48 (184)
T TIGR00455 5 ITKDERQALNG-HRGVVIWLTGLSGSGKSTIANALEKKLESKGYR 48 (184)
T ss_pred CCHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence 34445454544 4678999999 899999999999999877654
No 99
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=82.23 E-value=2 Score=37.19 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=27.1
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
.+.|.|.| ..||||.+.+|+.-|...|+++.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~ 35 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVL 35 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 46899999 67999999999999999887763
No 100
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=82.19 E-value=3.7 Score=37.57 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=60.3
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeeccc-chhhhhhhh--hcc----------------cCC-------
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGNL-GNPLSEAAF--HCI----------------ALP------- 93 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~gni-g~p~~~~~~--~~~----------------~~~------- 93 (363)
+..+|||||+ .||||...-|...|.+.|.+++...-- ..|++...+ +++ .+.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 5679999996 689999999999999999998643210 111111000 000 000
Q ss_pred ---------CCCCCCcEEEEEeC-cccccccCc-cccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEe
Q 017969 94 ---------SSKPKFQVAVVEVS-SYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (363)
Q Consensus 94 ---------~~~~~~d~~VlE~g-~~~l~~~~~-~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n 162 (363)
.....+|+.++|.- -||-+..-. ....-+.|++.=.-|-+. ..|++|++- .+..|+|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ---------~~KaGimEi---aDi~vVN 175 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQ---------AIKAGIMEI---ADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCC---------TB-TTHHHH----SEEEEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHH---------HHhhhhhhh---ccEEEEe
Confidence 01356899999975 576553211 133344555554444333 457777774 6789999
Q ss_pred CCChh
Q 017969 163 FGNQH 167 (363)
Q Consensus 163 ~dd~~ 167 (363)
..|..
T Consensus 176 KaD~~ 180 (266)
T PF03308_consen 176 KADRP 180 (266)
T ss_dssp --SHH
T ss_pred CCChH
Confidence 88843
No 101
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=81.97 E-value=2.7 Score=41.13 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=29.5
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
++.+|-..| -.|||||+.=|+.-|+..|+++.+.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaa 136 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAA 136 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEec
Confidence 345677777 579999999999999999999976554
No 102
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=81.86 E-value=2.1 Score=39.36 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=25.8
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHh-cCCCeEee
Q 017969 44 KILAVT--GTNGKSTVVTFVGQMLNH-LGIEAFVG 75 (363)
Q Consensus 44 ~vI~VT--GTnGKTTT~~~l~~iL~~-~g~~~~~~ 75 (363)
++|+|+ |-.|||||+.-|+..|.. .|+++.+.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence 466666 567899999999999997 59998654
No 103
>PRK03846 adenylylsulfate kinase; Provisional
Probab=81.81 E-value=4 Score=35.60 Aligned_cols=43 Identities=26% Similarity=0.282 Sum_probs=32.3
Q ss_pred eeHHHHHHhhCCCCCcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 29 MSELDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 29 l~~~~~~~~~~~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
++..+...+.. ++..+|+++| -.||||.+..|...|...|..+
T Consensus 11 v~~~~~~~~~~-~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~ 55 (198)
T PRK03846 11 VTKAQREQLHG-HKGVVLWFTGLSGSGKSTVAGALEEALHELGVST 55 (198)
T ss_pred CCHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 34455555554 4678999999 8899999999999998776543
No 104
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=81.62 E-value=2.5 Score=40.09 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=28.2
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+..+|++.|. .|||||+.-|+..|...|.++.+.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4568888884 5799999999999999887776544
No 105
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=81.60 E-value=3.2 Score=33.83 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=32.8
Q ss_pred EEEeCC-CChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhhcccCCCCCCCCcEEEEEeCc
Q 017969 46 LAVTGT-NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSS 108 (363)
Q Consensus 46 I~VTGT-nGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~ 108 (363)
+-|||+ .|||+++.-+...|++.|.+++..- |. ..+|+.++|-..
T Consensus 3 ~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~k----p~--------------~~~d~vliEGaG 48 (134)
T cd03109 3 GFGTGTDIGKTVATAILARALKEKGYRVAPLK----PV--------------QTYDFVLVEGAG 48 (134)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHCCCeEEEEe----cC--------------CCCCEEEEECCC
Confidence 345553 7999999999999999998885432 11 126889999763
No 106
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=81.56 E-value=2.5 Score=36.29 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=26.8
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+|+|.| ..||||.+..|+..|...|.++...+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~ 35 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 688888 67999999999999999898775433
No 107
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=81.50 E-value=2.2 Score=39.29 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=25.1
Q ss_pred EEEEe--CCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 45 vI~VT--GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
.|+|. |-.|||||+.-|+..|...|+++.+
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vll 33 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMI 33 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEE
Confidence 45555 5789999999999999999998854
No 108
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=81.38 E-value=2.6 Score=41.57 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=28.9
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
..+|.++| -.|||||+.-|+..|+..|.++.+..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~ 135 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVC 135 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 46888998 56899999999999999998886544
No 109
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=81.21 E-value=2.4 Score=38.09 Aligned_cols=31 Identities=29% Similarity=0.187 Sum_probs=25.9
Q ss_pred EEEEeCC---CChHHHHHHHHHHHHhcCCCeEee
Q 017969 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 45 vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
.|-|||| .|||+++..|.+.|+++|.+++.+
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~ 37 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGY 37 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4666665 799999999999999999988644
No 110
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=80.98 E-value=2.1 Score=38.24 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.9
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHh
Q 017969 45 ILAVTGT--NGKSTVVTFVGQMLNH 67 (363)
Q Consensus 45 vI~VTGT--nGKTTT~~~l~~iL~~ 67 (363)
+|||+|. .||||++..|...|+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5889995 5899999999999975
No 111
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=80.90 E-value=2.5 Score=38.25 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=26.0
Q ss_pred cEEEEeC---CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++|+|++ -.||||++.-++..|...|.++.+
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vll 35 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVL 35 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEE
Confidence 4677765 678999999999999999988754
No 112
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=80.72 E-value=2.3 Score=37.08 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=26.2
Q ss_pred EEEEeCC---CChHHHHHHHHHHHHhcCCCeEe
Q 017969 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 45 vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
.|-|||| .|||+++..|.+.|++.|.+++.
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~ 34 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVGY 34 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 5678887 69999999999999999998864
No 113
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=80.65 E-value=1.7 Score=39.77 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.0
Q ss_pred eCCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
-|-.|||||+.-|+..|.+.|+++-+
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLl 33 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQ 33 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEE
Confidence 46889999999999999999998853
No 114
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=80.39 E-value=2.2 Score=37.15 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.8
Q ss_pred EEEEeC--CCChHHHHHHHHHHH
Q 017969 45 ILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL 65 (363)
+|+|+| ..||||++..|..+|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 588999 679999999999998
No 115
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=80.31 E-value=2.2 Score=40.33 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=27.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEe
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++.+|-+.|.| |||||..=|++.|.+.|+++-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vll 172 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLL 172 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEE
Confidence 45678888876 6999999999999999998843
No 116
>PRK05480 uridine/cytidine kinase; Provisional
Probab=80.27 E-value=2.1 Score=37.67 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.8
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHH
Q 017969 41 RSIKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
.+..+|+|+| ..||||++..|...|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4667999999 579999999999988
No 117
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=80.17 E-value=1.7 Score=36.37 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
..|-|-||||- ||||+++.|+..+.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhC
Confidence 35679999984 79999999996653
No 118
>PRK11670 antiporter inner membrane protein; Provisional
Probab=80.12 E-value=2.8 Score=40.65 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=28.4
Q ss_pred CcEEEEe---CCCChHHHHHHHHHHHHhcCCCeEee
Q 017969 43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 43 ~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
.++|+|+ |-.|||||+.-|+..|.+.|+++.+.
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLI 142 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGIL 142 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4689997 56789999999999999999998643
No 119
>PRK00889 adenylylsulfate kinase; Provisional
Probab=79.83 E-value=2.9 Score=35.53 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=26.4
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
+..+|.++| -.||||++..|+..|...|.++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v 35 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPV 35 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 567999999 5789999999999998777554
No 120
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=79.76 E-value=2.4 Score=35.87 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=25.1
Q ss_pred EEEeCCCChHHHHHHHHHHHHhcCCCeEee
Q 017969 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 46 I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
..-.|-.||||++..|+..|...|.++.+.
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 344578899999999999999999988643
No 121
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=79.65 E-value=4.2 Score=38.23 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=30.8
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 42 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
+.++|.|-|| .||=||+..|...+++.|++++..++
T Consensus 147 ~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaT 185 (339)
T COG3367 147 DAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVAT 185 (339)
T ss_pred CCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEec
Confidence 4569999998 59999999999999999999865443
No 122
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=79.37 E-value=2.1 Score=38.55 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=25.7
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++|+|+ |-.|||||+..|+..|...|+++.+
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vll 35 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVAL 35 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence 466665 5678999999999999999988854
No 123
>PTZ00301 uridine kinase; Provisional
Probab=79.13 E-value=2.4 Score=37.66 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=20.7
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHh
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNH 67 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~ 67 (363)
..+|||+| ..||||.+..|..-|..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 47999999 78999999888766653
No 124
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=78.66 E-value=2.1 Score=33.69 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=19.8
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
+|+|+| -.||||++..|+.-| |..+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~ 27 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPV 27 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeE
Confidence 578888 469999999999877 4544
No 125
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=78.60 E-value=3.5 Score=38.57 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=27.7
Q ss_pred CCcEEEEe--CCCChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VT--GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+.++|+|. |-.|||||+.-|+..|.+.|+++-+.
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLli 38 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIV 38 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 45677666 46789999999999999999998654
No 126
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=78.34 E-value=2.9 Score=35.43 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=26.5
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
.-.|+||| -.||||.+.-|+..|+..|+++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 34799999 5689999999999999999877
No 127
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=78.25 E-value=2.3 Score=39.69 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=23.0
Q ss_pred eCCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
-|-.|||||+.-|+..|.+.|+++-.
T Consensus 8 KGGVGKTTta~nLA~~La~~G~rVLl 33 (290)
T CHL00072 8 KGGIGKSTTSCNISIALARRGKKVLQ 33 (290)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 35889999999999999999998854
No 128
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=78.07 E-value=2.4 Score=38.90 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=25.6
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VT--GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++|+|+ |-.|||||+.-|++.|...|+++-+
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLl 35 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQ 35 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 455555 5789999999999999999998854
No 129
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=77.50 E-value=3 Score=41.57 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=26.2
Q ss_pred CcEEEEeCCC---ChHHHHHHHHHHHHhcCCCeE
Q 017969 43 IKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 43 ~~vI~VTGTn---GKTTT~~~l~~iL~~~g~~~~ 73 (363)
.+.|.||||. |||+++..|...|++.|+++.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~ 36 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQ 36 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcc
Confidence 4568888874 599999999999999998764
No 130
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=77.32 E-value=3.7 Score=31.41 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=34.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhhcccCCCCCCCCcEEEEEeCcc
Q 017969 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY 109 (363)
Q Consensus 45 vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~ 109 (363)
+++--|..||||++.-++..|...|.++..... +..+|+.|+.++.+
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~------------------d~~~d~viiD~p~~ 50 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDL------------------DPQYDYIIIDTPPS 50 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeC------------------CCCCCEEEEeCcCC
Confidence 445567899999999999999988877643221 22368899999853
No 131
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=77.24 E-value=2.7 Score=37.72 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 50 GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 50 GTnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
|-.||||+..+|++.|.+.|.++.+.-
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lID 37 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALID 37 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 678999999999999999998886543
No 132
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=77.17 E-value=2.3 Score=37.50 Aligned_cols=31 Identities=32% Similarity=0.577 Sum_probs=22.6
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
..+||+|| ..||||++.+++. .|+.+...+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~----~G~~vidaD~ 34 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE----LGFPVIDADD 34 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH----cCCeEEEccH
Confidence 35899999 6899998887665 5666644443
No 133
>PRK10037 cell division protein; Provisional
Probab=76.98 E-value=2.7 Score=38.18 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=26.2
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhcCCCeEee
Q 017969 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 44 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
++|+|. |-.|||||+.-|+..|.+.|+++.+.
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 356665 56789999999999999999988543
No 134
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=76.54 E-value=4.6 Score=37.89 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=30.1
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeec
Q 017969 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 41 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
...++|+|+|. .||||++..+...|...|.++...+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36789999994 6899999999999999998886543
No 135
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=76.35 E-value=4.2 Score=34.28 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=25.7
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
..+|-+|| -.||||.+..|..-|.+.|..+.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~ 34 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVY 34 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 35888999 56899999999999999998774
No 136
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=76.22 E-value=3 Score=37.38 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=29.6
Q ss_pred eeeHHHHHHhhCCCCCcEEEEeCC--CChHHHHHHHHHHHHhcCC
Q 017969 28 VMSELDFAAQVIPRSIKILAVTGT--NGKSTVVTFVGQMLNHLGI 70 (363)
Q Consensus 28 ~l~~~~~~~~~~~~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~ 70 (363)
+..+++-..+.. .+..+|+|+|- .||||.+..|...|...+-
T Consensus 19 l~~~~~~~~~~~-~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 19 LLRRLAALQAEP-QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred HHHHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 334444333333 35679999995 5799999999999997653
No 137
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=76.17 E-value=3.9 Score=36.27 Aligned_cols=29 Identities=38% Similarity=0.414 Sum_probs=23.9
Q ss_pred EEEeCC---CChHHHHHHHHHHHHhcCCCeEe
Q 017969 46 LAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 46 I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
|-|||| .|||+++..|.+.|+++|.+++.
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~ 33 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAG 33 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEE
Confidence 345554 79999999999999999998854
No 138
>PRK00698 tmk thymidylate kinase; Validated
Probab=76.06 E-value=4.7 Score=35.01 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=26.3
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
.++|.|.| ..||||.+..|+.-|...|..+.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~ 35 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVV 35 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCcee
Confidence 46899999 78999999999999988876543
No 139
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=75.94 E-value=3.4 Score=37.15 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=21.1
Q ss_pred EEEEeC--CCChHHHHHH-HHHHHHhcCCCe
Q 017969 45 ILAVTG--TNGKSTVVTF-VGQMLNHLGIEA 72 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~-l~~iL~~~g~~~ 72 (363)
.|+||| -.||||.+++ +..+++..|+.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~V 32 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNV 32 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceE
Confidence 588887 7899999999 666666554444
No 140
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=75.86 E-value=2.1 Score=35.98 Aligned_cols=19 Identities=26% Similarity=0.594 Sum_probs=15.5
Q ss_pred EEEeC--CCChHHHHHHHHHH
Q 017969 46 LAVTG--TNGKSTVVTFVGQM 64 (363)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~i 64 (363)
|+||| +.||||++.-|+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 78999 67999999888866
No 141
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=75.60 E-value=4.7 Score=38.10 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=29.8
Q ss_pred CCcEEEE----eCCCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~V----TGTnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+.|+|.| .|-.|||.++.+|...|+++|++++..+
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS 65 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLS 65 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEEC
Confidence 5678887 4899999999999999999999886433
No 142
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=75.43 E-value=5.5 Score=31.69 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=22.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 50 GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 50 GTnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
|..||||++..+++.|.+.|.++....
T Consensus 8 gG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 8 GGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 478999999999999999988875433
No 143
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=75.37 E-value=5.2 Score=28.40 Aligned_cols=21 Identities=48% Similarity=0.683 Sum_probs=18.0
Q ss_pred EEEEeC--CCChHHHHHHHHHHH
Q 017969 45 ILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL 65 (363)
+|+|+| ..||||.+..|.+.|
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 477888 568999999999999
No 144
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=75.28 E-value=3.5 Score=34.89 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=22.9
Q ss_pred eCCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
-|-.||||++.-|+..|.+.|.++.+
T Consensus 8 kgG~GKTt~a~~LA~~la~~g~~vll 33 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGL 33 (169)
T ss_pred CCcCChhHHHHHHHHHHHHcCCcEEE
Confidence 46789999999999999999998854
No 145
>PRK08233 hypothetical protein; Provisional
Probab=75.18 E-value=2.8 Score=35.57 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.5
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHH
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
..+|+|+| ..||||.+..|+..|.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999 5689999999998875
No 146
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=74.94 E-value=8.4 Score=32.96 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=21.6
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
|++-||| ..||||+-.-+-. ....|.+++..-|
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~n 35 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVN 35 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEEC
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEc
Confidence 6788999 7899997544433 4567888876544
No 147
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=74.71 E-value=4.8 Score=38.94 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=30.7
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
+.++|+|+| -.||||...-+-..|++.|+++++.-.
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh 241 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKH 241 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 467999999 579999999999999999999866543
No 148
>CHL00175 minD septum-site determining protein; Validated
Probab=74.71 E-value=5.3 Score=36.88 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=28.0
Q ss_pred CCcEEEEeC---CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 42 SIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 42 ~~~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
..++|+|++ -.||||++.-|+..|.+.|.++.+
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vll 49 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVAL 49 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEE
Confidence 456888876 568999999999999999988854
No 149
>PRK13236 nitrogenase reductase; Reviewed
Probab=74.29 E-value=3.5 Score=38.61 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=27.6
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+.++|.|.| -.|||||+.-|+..|.+.|+++.+.
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLli 40 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIV 40 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 345666654 7899999999999999999999653
No 150
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=73.99 E-value=6.1 Score=33.43 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=26.0
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
++.++| ..||||++..++..|.+.|.++....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 567777 57999999999999998888775544
No 151
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=73.93 E-value=2.9 Score=36.73 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=22.6
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhc
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHL 68 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~ 68 (363)
+.-+|||+| ..||||.+..+..+|..+
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~ 31 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGC 31 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCC
Confidence 345899999 679999999999998754
No 152
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=73.78 E-value=2.3 Score=36.96 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=21.6
Q ss_pred CCcEEEEeCCCChHHH--HHHHHHHHHhcCCC
Q 017969 42 SIKILAVTGTNGKSTV--VTFVGQMLNHLGIE 71 (363)
Q Consensus 42 ~~~vI~VTGTnGKTTT--~~~l~~iL~~~g~~ 71 (363)
+.|+|+||||.|-+|| +.....|++....+
T Consensus 4 KhPiIavTGSSGAGTTTts~aFrKiF~~~~I~ 35 (289)
T COG3954 4 KHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIH 35 (289)
T ss_pred CCceEEEecCCCCCcccHHHHHHHHHHhcCcc
Confidence 6789999999886554 45566777766544
No 153
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=73.73 E-value=2.9 Score=36.16 Aligned_cols=25 Identities=40% Similarity=0.696 Sum_probs=18.8
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
+||||| -.||||++.++.. .|..+.
T Consensus 2 iIglTG~igsGKStv~~~l~~----~G~~vi 28 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE----LGFPVI 28 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH----TT-EEE
T ss_pred EEEEECCCcCCHHHHHHHHHH----CCCCEE
Confidence 699999 5899998887755 676653
No 154
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=73.72 E-value=1.9 Score=39.39 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=23.3
Q ss_pred EEEE--eCCCChHHHHHHHHHHHHhcCCCeE
Q 017969 45 ILAV--TGTNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 45 vI~V--TGTnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
+|+| -|-.|||||+.-|++.|.+.| ++.
T Consensus 4 ~iav~~KGGvGKTT~a~nLA~~La~~G-rVL 33 (264)
T PRK13231 4 KIAIYGKGGIGKSTTVSNMAAAYSNDH-RVL 33 (264)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCC-EEE
Confidence 4444 467899999999999999999 874
No 155
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=73.46 E-value=8.4 Score=33.25 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=28.4
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
++..+|=.|| -.||||.+..|...|.+.|+.+-
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y 55 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVY 55 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3556899999 57999999999999999998773
No 156
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=73.18 E-value=6 Score=39.25 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=27.9
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
..+|.++| -.|||||+.-|+..|...|+++.+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~ 130 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVA 130 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEec
Confidence 45777888 57899999999999999998886543
No 157
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=73.10 E-value=6.2 Score=36.34 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=28.4
Q ss_pred CCcEEEEeC---CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 42 SIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 42 ~~~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
..++|+||. --|||||+..|+..|.+.|.++.+
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVll 91 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLL 91 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 456888885 568999999999999999999964
No 158
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=72.94 E-value=6 Score=37.84 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=29.4
Q ss_pred CCcEEEE----eCCCChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~V----TGTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+.|||.| .|-.|||-++.+|...|++.|++++..
T Consensus 55 pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~Il 92 (338)
T PRK01906 55 GVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVV 92 (338)
T ss_pred CCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEE
Confidence 5678877 689999999999999999999988643
No 159
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=72.87 E-value=5.8 Score=32.72 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=24.4
Q ss_pred cEEEEeC---CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++|+|+| ..||||++.-++..|.+.|.++.+
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vll 34 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLL 34 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEE
Confidence 3566666 679999999999999999877643
No 160
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=72.27 E-value=4.5 Score=36.32 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=24.8
Q ss_pred EEEEe---CCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 45 vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
+|+|+ |-.||||++.-|+..|...|.++.+
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vll 34 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLA 34 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 44444 6789999999999999999988854
No 161
>PLN02924 thymidylate kinase
Probab=71.99 E-value=5.8 Score=35.46 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=28.8
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
+..+.|+|.| ..||||-+.+|+.-|+..|.++.
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~ 48 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAE 48 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 3567899999 78999999999999999998763
No 162
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=71.76 E-value=7.5 Score=41.28 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=29.4
Q ss_pred CCCcEEEEeCCC---ChHHHHHHHHHHHHhcCCCeEe
Q 017969 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 41 ~~~~vI~VTGTn---GKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++.++|.||++. ||||++.-|+..|...|.++-+
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLl 565 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLF 565 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 466899999965 9999999999999999988743
No 163
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=71.38 E-value=7.6 Score=34.40 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=27.8
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
+...|.|-| -.||||.+.+|...|++.|.++.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~ 35 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVV 35 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 356899999 68999999999999999998764
No 164
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=71.17 E-value=6.9 Score=38.55 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=27.4
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+.-+|||+| -.||||.+..|..+|+..|.+++..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvI 246 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATL 246 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEE
Confidence 346899999 4689999999999998877666444
No 165
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=71.12 E-value=3.9 Score=34.65 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=22.4
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHh
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNH 67 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~ 67 (363)
.|+|+|+| |.||||...-|+.++..
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCC
Confidence 47999999 89999999999999874
No 166
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=70.84 E-value=6.9 Score=37.24 Aligned_cols=34 Identities=21% Similarity=0.493 Sum_probs=29.7
Q ss_pred CCcEEEE----eCCCChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~V----TGTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+.|+|.| +|-.|||-++.+|...|++.|++++..
T Consensus 34 ~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~Il 71 (326)
T PF02606_consen 34 PVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAIL 71 (326)
T ss_pred CCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEE
Confidence 5678877 689999999999999999999998643
No 167
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=70.65 E-value=4.7 Score=36.67 Aligned_cols=31 Identities=32% Similarity=0.352 Sum_probs=23.9
Q ss_pred EEEEe---CCCChHHHHHHHHHHHHhcCCCeEee
Q 017969 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 45 vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+|.|. |-.|||||+.=|+-.|...|.++++.
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~l 35 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLL 35 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 45554 67899999999999999999999753
No 168
>PLN02796 D-glycerate 3-kinase
Probab=70.63 E-value=6.4 Score=37.64 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=26.2
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEe
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
+.-+|||+|. .||||++..|..+|...|.+++.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~ 133 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAAS 133 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeE
Confidence 3457999995 68999999999999877655543
No 169
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=70.42 E-value=4.3 Score=36.93 Aligned_cols=46 Identities=20% Similarity=0.147 Sum_probs=27.0
Q ss_pred cCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhc
Q 017969 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMD 289 (363)
Q Consensus 238 lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~ 289 (363)
-|++.+++.+.+..-. + ..+.. ..-...+.||| +.+++.+..-++.
T Consensus 158 ~g~s~eea~~Ri~~Q~--~-~~ek~--~~aD~VI~N~~-~g~~~~L~~~v~~ 203 (244)
T PTZ00451 158 NGFSKEEALQRIGSQM--P-LEEKR--RLADYIIENDS-ADDLDELRGSVCD 203 (244)
T ss_pred CCCCHHHHHHHHHhCC--C-HHHHH--HhCCEEEECCC-CCCHHHHHHHHHH
Confidence 4788888888887632 2 22222 13345555653 3688877765543
No 170
>PLN02348 phosphoribulokinase
Probab=70.35 E-value=5.3 Score=38.85 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=24.2
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcC
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLG 69 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g 69 (363)
+..+|||+| ..||||.+..|..+|...+
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~ 77 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGGAA 77 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcc
Confidence 456999999 6799999999999997654
No 171
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=69.85 E-value=6 Score=35.96 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=23.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHH-hcCCCeEe
Q 017969 45 ILAVTGTNGKSTVVTFVGQMLN-HLGIEAFV 74 (363)
Q Consensus 45 vI~VTGTnGKTTT~~~l~~iL~-~~g~~~~~ 74 (363)
+...-|-.|||||+-.|+..|. ..|.++-+
T Consensus 7 v~n~KGGvGKTT~a~nLa~~La~~~~~kVLl 37 (259)
T COG1192 7 VANQKGGVGKTTTAVNLAAALAKRGGKKVLL 37 (259)
T ss_pred EEecCCCccHHHHHHHHHHHHHHhcCCcEEE
Confidence 4445688899999999999999 55577754
No 172
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=69.78 E-value=4.7 Score=37.11 Aligned_cols=31 Identities=32% Similarity=0.319 Sum_probs=27.1
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
.+|.|+ |-.|||||+..|+..|...|.++++
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vgl 81 (300)
T KOG3022|consen 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGL 81 (300)
T ss_pred eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEE
Confidence 477776 7889999999999999999998864
No 173
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=69.64 E-value=6.2 Score=39.31 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.3
Q ss_pred eCC-CChHHHHHHHHHHHHhcCCCeEe
Q 017969 49 TGT-NGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 49 TGT-nGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
|+| .|||+++..|...|+++|+++..
T Consensus 7 T~t~vGKT~vt~~L~~~L~~~G~~V~~ 33 (449)
T TIGR00379 7 TSSGVGKTTISTGIMKALSRRKLRVQP 33 (449)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCceeE
Confidence 444 79999999999999999998754
No 174
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=69.57 E-value=7 Score=36.63 Aligned_cols=107 Identities=18% Similarity=0.146 Sum_probs=54.7
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEeecc---------cchhhhhhhhh-------cccCCCCCCCCcEE
Q 017969 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGN---------LGNPLSEAAFH-------CIALPSSKPKFQVA 102 (363)
Q Consensus 42 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~gn---------ig~p~~~~~~~-------~~~~~~~~~~~d~~ 102 (363)
+.++|++-|| .||=||+.+|...|+++|+++...++ .|.++.....+ .+.....+ +.|+.
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimia~~Gv~iDav~~DFvaGavE~~v~~~~~-~~d~i 189 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIMIAGYGVPIDAVPSDFVAGAVEALVPEAAE-EHDWI 189 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHCHSEC--GGGSBGGGHHHHHHHHHHHHCC-C-SEE
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEEEecCCeeccchhhhhHHHHHHHHHHhhCc-CCCEE
Confidence 5679999997 59999999999999999999865544 34444321111 00000112 34999
Q ss_pred EEEeCcc---------cccccCccccccEEEE-eCCChhhhccC-----CCHHHHHHHHHHhc
Q 017969 103 VVEVSSY---------QMEIPNKYFCPTVSVV-LNLTPDHLERH-----KTMKNYALTKCHLF 150 (363)
Q Consensus 103 VlE~g~~---------~l~~~~~~~~p~i~vi-TnI~~dHl~~~-----gt~e~~~~~K~~i~ 150 (363)
|+|-=+. .+..+.- -+||..|+ ..-++-|++-| +++++..+.-..+.
T Consensus 190 vVEGQgsL~hPay~gvsl~lL~G-s~Pd~lVL~H~p~r~~~~~~p~~~ip~l~~~I~l~e~la 251 (301)
T PF07755_consen 190 VVEGQGSLSHPAYSGVSLGLLHG-SQPDALVLCHAPGRKHRDGFPHYPIPPLEEEIELIEALA 251 (301)
T ss_dssp EEE--S-TTSTTTHHCHHHHHHH-H--SEEEEEEETT-SC-TTSTTSC---HHHHHHHHHHCC
T ss_pred EEeccccccCccccccchhhhcc-CCCCeEEEEecCCcccccCCCcCCCCCHHHHHHHHHHhh
Confidence 9996321 0111111 47886555 44666666654 36666655544443
No 175
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=68.70 E-value=7.8 Score=33.94 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=23.1
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeec
Q 017969 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 44 ~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
++|.+.|. .|||||..=|++-+...|.++.+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 34555552 5899999999999998898886544
No 176
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=68.64 E-value=5.3 Score=40.15 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.2
Q ss_pred EeC--C-CChHHHHHHHHHHHHhcCCCeEe
Q 017969 48 VTG--T-NGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 48 VTG--T-nGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
||| | .|||.++..|...|++.|++++.
T Consensus 3 I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~ 32 (475)
T TIGR00313 3 VVGTTSSAGKSTLTAGLCRILARRGYRVAP 32 (475)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 555 4 79999999999999999998753
No 177
>PRK07429 phosphoribulokinase; Provisional
Probab=68.62 E-value=5.2 Score=38.08 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.7
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcC
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLG 69 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g 69 (363)
+..+|+|+| ..||||++..|..+|...+
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~~ 36 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEEL 36 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccCc
Confidence 456999999 5789999999999997553
No 178
>PRK07933 thymidylate kinase; Validated
Probab=68.50 E-value=8.7 Score=34.06 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=25.4
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
.|+|-| -.||||.+.+|..-|+..|.++.
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~ 32 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVA 32 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 577888 57999999999999999998774
No 179
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=68.50 E-value=8.8 Score=37.60 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=28.1
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
..+|++.| ..|||||...|+.-|...|.+++....
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 35788888 458999999999999988988865443
No 180
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=68.45 E-value=7.6 Score=40.21 Aligned_cols=35 Identities=29% Similarity=0.317 Sum_probs=30.4
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
..++|+|+| -.||||...-|-..|++.|+++++.-
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIK 45 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIK 45 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEE
Confidence 468999999 77999999999999999999987544
No 181
>PRK10867 signal recognition particle protein; Provisional
Probab=67.99 E-value=8.7 Score=38.06 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=27.7
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhc-CCCeEeec
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHL-GIEAFVGG 76 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~-g~~~~~~g 76 (363)
..+|.++| ..|||||+.-|+.-|... |.++.+..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~ 136 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVA 136 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 46888888 568999999999999888 88886543
No 182
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=67.11 E-value=6.1 Score=34.68 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=22.5
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHh
Q 017969 41 RSIKILAVTGT--NGKSTVVTFVGQMLNH 67 (363)
Q Consensus 41 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~ 67 (363)
++..+|+|+|. .||||.+..|...|..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35679999994 6999999999998864
No 183
>PRK10818 cell division inhibitor MinD; Provisional
Probab=66.95 E-value=7 Score=35.75 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=25.5
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++|+|+ |-.||||++.-|++.|...|.++.+
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vll 36 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 466665 5678999999999999999988754
No 184
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=66.71 E-value=4.5 Score=35.21 Aligned_cols=21 Identities=29% Similarity=0.722 Sum_probs=18.1
Q ss_pred EEEEeC--CCChHHHHHHHHHHH
Q 017969 45 ILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL 65 (363)
+|+|+| ..||||.+..|...|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 588998 679999999998886
No 185
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=66.36 E-value=5.8 Score=35.05 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=20.6
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
..+||+|| ..||||.+.++..-| |..+
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~l---g~~v 34 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKL---NLNV 34 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHc---CCeE
Confidence 35799999 689999998887633 5544
No 186
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=66.19 E-value=6.6 Score=33.63 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=27.0
Q ss_pred hcCCCCCCeeEEEEeecCCEEEEEcCCCC-CHHHHHHHHhcccCC------cEEEEEcCC
Q 017969 250 EILRTPPHRMQIVHRDIQGVTWVDDSKAT-NLEATCTGLMDLKGH------KCVILLGGQ 302 (363)
Q Consensus 250 ~~~~~~~gR~e~~~~~~~~~~iidD~~a~-np~s~~~al~~~~~~------~~i~IlG~~ 302 (363)
.+++|++||+.++=...-+.-+..|- ++ --.++..|++.+... -.|+|+||-
T Consensus 61 ~k~RPL~gRiNiVLSR~~~~~~~~t~-~~~~~~slesAl~lL~~pp~~~~ve~vfvIGG~ 119 (190)
T KOG1324|consen 61 EKFRPLPGRINVVLSRSLKEDFAPTE-NVFLSSSLESALDLLEEPPSSNSVEMVFVIGGS 119 (190)
T ss_pred cccCCCCCceEEEEecccCcCcCCcc-CEEEeccHHHHHHhhcCCccccceeEEEEEcCH
Confidence 35899999999984211111111111 11 123555566655311 357888863
No 187
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=66.06 E-value=8.3 Score=35.31 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=25.7
Q ss_pred cEEEEeC----CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
|.|-||| +-||+.|++-|..+|+.+|+++..
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~ 36 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTM 36 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEE
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeee
Confidence 5788888 679999999999999999999853
No 188
>PRK13768 GTPase; Provisional
Probab=65.83 E-value=10 Score=34.65 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=24.0
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
+|.|+| ..||||++.-+...|...|.++..
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~ 35 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAI 35 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEE
Confidence 555665 679999999999999988877643
No 189
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=65.29 E-value=8.8 Score=29.77 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=32.7
Q ss_pred EEeCCCChHHHHHHHHHHHHhc-CCCeEeecccchhhhhhhhhcccCCCCCCCCcEEEEEeCcc
Q 017969 47 AVTGTNGKSTVVTFVGQMLNHL-GIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY 109 (363)
Q Consensus 47 ~VTGTnGKTTT~~~l~~iL~~~-g~~~~~~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~ 109 (363)
+--|..||||++.-|+..+.+. |.++.+.- ... +...|+.|+-++.+
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d--------~d~--------~~~~D~IIiDtpp~ 53 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVD--------LDL--------QFGDDYVVVDLGRS 53 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEE--------CCC--------CCCCCEEEEeCCCC
Confidence 3346779999999999999998 88875431 110 12238888888853
No 190
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=65.25 E-value=6 Score=36.64 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=20.9
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhcC
Q 017969 45 ILAVTGT--NGKSTVVTFVGQMLNHLG 69 (363)
Q Consensus 45 vI~VTGT--nGKTTT~~~l~~iL~~~g 69 (363)
+|+|+|. .||||.+.+|..+|...+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~ 27 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL 27 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc
Confidence 4889994 689999999999997654
No 191
>PRK13973 thymidylate kinase; Provisional
Probab=64.63 E-value=12 Score=33.07 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=27.5
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
.+.|.|-| -.||||.+.+|+.-|...|+++..
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~ 36 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLV 36 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46788888 579999999999999999988743
No 192
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=64.44 E-value=87 Score=26.40 Aligned_cols=143 Identities=15% Similarity=0.133 Sum_probs=79.4
Q ss_pred CChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhhcccCCCCCCCCcEEEEEeCcc-cccccCccccccEEEEeCCCh
Q 017969 52 NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTP 130 (363)
Q Consensus 52 nGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~-~l~~~~~~~~p~i~viTnI~~ 130 (363)
-|=-|+..+|..++...|+.+...-.+|.-. +...-++-+-+|.. ...... .-++|+.|..+-
T Consensus 3 qGv~t~g~ila~a~~~~G~~v~~~~~ygs~~-------------rGG~~~~~vris~~~~~~~~~-~~~~Dilv~l~~-- 66 (173)
T PF01558_consen 3 QGVVTAGKILARAAAREGYYVQSTPEYGSEI-------------RGGPVVSHVRISDEPIIPSPP-VGEADILVALDP-- 66 (173)
T ss_dssp STHHHHHHHHHHHHHHTTSEEEEEEEEESSS-------------SSSCEEEEEEEESS--SSSS--TSSESEEEESSH--
T ss_pred cHHHHHHHHHHHHHHHcCCCEEEEeCCChhh-------------cCCeEEEEEEEecCcCccCcc-cCCCCEEEEcCH--
Confidence 3555788999999999998875544444222 23444455556644 222222 147888888742
Q ss_pred hhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCc------cEEEeccCCCceeccccccceEEEecC
Q 017969 131 DHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF------NLAWIGAFPGVKIDTEAKTASFEVPAV 204 (363)
Q Consensus 131 dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (363)
+.+. ..++.+++++++|+|.+............. +++.+ +..
T Consensus 67 ---------~~~~----~~~~~l~~~g~vi~ns~~~~~~~~~~~~~~~~~~~~~v~~i-------------------p~~ 114 (173)
T PF01558_consen 67 ---------EALE----RHLKGLKPGGVVIINSSLVKPEPEEKDKPAYFPRIERVIGI-------------------PAT 114 (173)
T ss_dssp ---------HHHH----HCGTTCETTEEEEEETTT-CHHHHHHHCCCHHHHHCEEEEE--------------------HH
T ss_pred ---------HHHH----HHhcCcCcCeEEEEECCCCCcHhHhhccccccccceeEEec-------------------cHH
Confidence 2222 567778899999999864322222111100 11111 100
Q ss_pred CeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhc
Q 017969 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251 (363)
Q Consensus 205 ~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~ 251 (363)
+ ....+.+.....|+++.- +++..++++.+.+.+++++
T Consensus 115 ~-------ia~~~~~~~~~~N~~~lG--a~~~~~~l~~e~~~~~i~~ 152 (173)
T PF01558_consen 115 E-------IAKELGGNPRFANMVMLG--ALAKLLGLPLESLEEAIKE 152 (173)
T ss_dssp H-------HHHHTTS-GGGHHHHHHH--HHHHHHTS-HHHHHHHHHH
T ss_pred H-------HHHhhhcchhhHHHHHHH--HHHHHcCCCHHHHHHHHHH
Confidence 0 111233334556777555 6778889999999999986
No 193
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=63.96 E-value=8.7 Score=32.20 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=22.4
Q ss_pred CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 51 TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 51 TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
-.||||++.-|...|++.|.+++..
T Consensus 8 ~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 8 GVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CccHHHHHHHHHHHHHHCCCcEEEE
Confidence 4799999999999999999998664
No 194
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=62.92 E-value=10 Score=34.99 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=23.7
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
|.|.++| ..||||.+.-|...|.+.+.++..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~ 34 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVI 34 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 6789999 899999999999999996665543
No 195
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=62.85 E-value=12 Score=34.65 Aligned_cols=77 Identities=26% Similarity=0.197 Sum_probs=43.8
Q ss_pred Cceeeeeccc----cCCCcHHHHHHHhcCCceeeHHHHHHhhCC---CCCcEEEEeCCC--ChHHHHHHHHHHHHhcCCC
Q 017969 1 MWMLWLFLLE----FQLKATGLACLLQSGKRVMSELDFAAQVIP---RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIE 71 (363)
Q Consensus 1 ~~~~~~~~~~----~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~---~~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~ 71 (363)
|.|.|+..+. +--.+|.+..+++.-.+--.+...+-+..+ .+..+++.-|-| |||||-.||.-++...+-+
T Consensus 1 ~~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~ 80 (325)
T COG4586 1 MAMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGK 80 (325)
T ss_pred CceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCe
Confidence 4456654432 223466777666543332211111211111 255699999977 6999999999999876545
Q ss_pred eEeecc
Q 017969 72 AFVGGN 77 (363)
Q Consensus 72 ~~~~gn 77 (363)
+...|-
T Consensus 81 v~V~G~ 86 (325)
T COG4586 81 VRVNGK 86 (325)
T ss_pred EEecCc
Confidence 544443
No 196
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=61.81 E-value=6.4 Score=33.19 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=16.8
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHh
Q 017969 45 ILAVTGT--NGKSTVVTFVGQMLNH 67 (363)
Q Consensus 45 vI~VTGT--nGKTTT~~~l~~iL~~ 67 (363)
+|.|.|+ .||||+..+|.+-|.-
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~ 38 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELGL 38 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhCC
Confidence 4444443 4899999999998863
No 197
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=61.77 E-value=14 Score=34.33 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=25.3
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhc-C-CCeEee
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHL-G-IEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~-g-~~~~~~ 75 (363)
+..+|++.| -.|||||+.-|+.-+... | .++.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li 230 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALI 230 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 345888888 458999999999888765 4 666443
No 198
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=61.75 E-value=6.3 Score=33.87 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=19.4
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHh
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNH 67 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~ 67 (363)
++|-++| |.||||++..|...|..
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~ 27 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPE 27 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcC
Confidence 4777877 89999999999888754
No 199
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=61.69 E-value=8.3 Score=33.01 Aligned_cols=29 Identities=38% Similarity=0.623 Sum_probs=21.5
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
+|+||| -.||||.+.++.. .|..+...+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~----~g~~~i~~D~ 31 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE----LGIPVIDADK 31 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH----CCCCEEecCH
Confidence 489999 5799999999887 4666643333
No 200
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=61.24 E-value=15 Score=35.80 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=28.6
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+.++|+++| -.|||||..-|+..+...|.+++...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 467889999 67999999999998888888776543
No 201
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=60.50 E-value=13 Score=36.95 Aligned_cols=31 Identities=29% Similarity=0.513 Sum_probs=27.5
Q ss_pred cEEEEeC----CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
|.|-||| |-||+.|++-|..+|++.|+++..
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~ 36 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTI 36 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEE
Confidence 5688888 789999999999999999998853
No 202
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=60.25 E-value=7.9 Score=36.01 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=21.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhcCCC
Q 017969 45 ILAVTGTNGKSTVVTFVGQMLNHLGIE 71 (363)
Q Consensus 45 vI~VTGTnGKTTT~~~l~~iL~~~g~~ 71 (363)
+.|=+|| ||||++..++..|...|..
T Consensus 63 l~G~pGT-GKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 63 FTGNPGT-GKTTVALRMAQILHRLGYV 88 (284)
T ss_pred EEcCCCC-CHHHHHHHHHHHHHHcCCc
Confidence 4466677 9999999999999987753
No 203
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=60.22 E-value=9.5 Score=33.28 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=20.2
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
+.|+||| -.||||++.++...+ |..+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~---g~~~ 29 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK---GIPI 29 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---CCeE
Confidence 4799999 579999999887654 5544
No 204
>PRK11519 tyrosine kinase; Provisional
Probab=60.18 E-value=14 Score=39.21 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=29.7
Q ss_pred CCCcEEEEeC---CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 41 RSIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 41 ~~~~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
.+.++|.||+ .-||||++.-|+..|...|.++-+.
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlI 561 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLI 561 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 3567999999 5699999999999999999887543
No 205
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=60.18 E-value=11 Score=33.39 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=25.7
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
+.|-+|| ..||||.+.=|+.+|++.+..+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~v 32 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRV 32 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhc
Confidence 5788999 8999999999999999987655
No 206
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=59.92 E-value=16 Score=33.24 Aligned_cols=31 Identities=29% Similarity=0.480 Sum_probs=26.6
Q ss_pred cEEEEeC----CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
|.|-||| +-||+.|++-+..+|+.+|+++..
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~ 35 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTA 35 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEE
Confidence 3577787 579999999999999999999853
No 207
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=59.80 E-value=11 Score=33.29 Aligned_cols=27 Identities=44% Similarity=0.715 Sum_probs=20.1
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
..+||||| -.||||.+.++.. .|..+.
T Consensus 5 ~~~igitG~igsGKSt~~~~l~~----~g~~v~ 33 (208)
T PRK14731 5 PFLVGVTGGIGSGKSTVCRFLAE----MGCELF 33 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----CCCeEE
Confidence 35799999 5789998887765 465553
No 208
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=59.73 E-value=10 Score=35.99 Aligned_cols=33 Identities=27% Similarity=0.539 Sum_probs=28.8
Q ss_pred CCcEEEE----eCCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 42 ~~~vI~V----TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
+.|||.| .|-+|||-++-.|..-|++.|.+++.
T Consensus 46 pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gv 82 (336)
T COG1663 46 PVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGV 82 (336)
T ss_pred CCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEE
Confidence 3677765 69999999999999999999999864
No 209
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=59.17 E-value=18 Score=30.34 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=27.7
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
++.=+|=||| -.||+|.+-.|.+.|.+.|..+
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~ 62 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLT 62 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceE
Confidence 4667899999 5799999999999999999765
No 210
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=58.93 E-value=1.2e+02 Score=26.02 Aligned_cols=94 Identities=11% Similarity=0.104 Sum_probs=54.1
Q ss_pred EEEEeCCCChH--HHHHHHHHHHHhcCCCeEeecccchhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccE
Q 017969 45 ILAVTGTNGKS--TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTV 122 (363)
Q Consensus 45 vI~VTGTnGKT--TT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i 122 (363)
.|-|+|.-|-+ |+..+|+.++...|+.+...-.+|.-. +...-++-+=+|...+.......+||+
T Consensus 3 ~i~i~G~gGqGv~tag~ila~a~~~~G~~V~~~~~ygs~~-------------RGG~~~~~vris~~~i~~~~~~~~~D~ 69 (181)
T PRK08534 3 EIRFHGRGGQGAVTAAEILAKAAFEDGKFSQAFPFFGVER-------------RGAPVMAFTRIDDKPIRLRSQIYEPDY 69 (181)
T ss_pred EEEEEEECcchHHHHHHHHHHHHHhcCCeEEEEeccChhh-------------cCCcEEEEEEEcCCcccCcccCCCCCE
Confidence 46677777766 445588889988998886555555322 222333344445444432222247788
Q ss_pred EEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCC
Q 017969 123 SVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164 (363)
Q Consensus 123 ~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~d 164 (363)
.+..+-.. + +...+...+++++.+|+|.+
T Consensus 70 lva~~~~~-----------~--~~~~~~~~l~~gg~vi~ns~ 98 (181)
T PRK08534 70 VIVQDPTL-----------L--DSVDVTSGLKKDGIIIINTT 98 (181)
T ss_pred EEEcCHHH-----------h--cchhHhcCcCCCcEEEEECC
Confidence 77766311 1 11123455668999999964
No 211
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=58.84 E-value=9.3 Score=29.98 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=16.1
Q ss_pred EEEeC--CCChHHHHHHHHHHH
Q 017969 46 LAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL 65 (363)
|.|+| -.||||++..|...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 45666 359999999999987
No 212
>PRK05541 adenylylsulfate kinase; Provisional
Probab=58.80 E-value=17 Score=30.85 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=25.4
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
++..+|.++| -.||||.+..|..-|...+..+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~ 38 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNV 38 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3567899999 5789999999999998765443
No 213
>PRK04040 adenylate kinase; Provisional
Probab=58.77 E-value=13 Score=32.35 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=22.6
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhcCCCeE
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~ 73 (363)
.++|+|||. .||||.+..+..-|. .+.++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-EDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEE
Confidence 358999984 689999999998885 244443
No 214
>PRK06547 hypothetical protein; Provisional
Probab=58.74 E-value=16 Score=31.16 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=20.6
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHH
Q 017969 41 RSIKILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 41 ~~~~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
....+|+|+|. .||||++..|+..+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35679999984 679999999988753
No 215
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=58.59 E-value=9.8 Score=33.09 Aligned_cols=26 Identities=38% Similarity=0.630 Sum_probs=20.3
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
.+|+||| ..||||.+.++.. .|..+.
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~----~g~~~i 30 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE----LGAPVI 30 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----cCCEEE
Confidence 5799999 6799999998876 365553
No 216
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=58.53 E-value=12 Score=35.42 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=40.0
Q ss_pred CcHHHHHHHhcCCc-eee----HHH---HHHhh---CCCCCcEEEEeC---CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 14 KATGLACLLQSGKR-VMS----ELD---FAAQV---IPRSIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 14 ~~p~l~~a~~~~~~-~l~----~~~---~~~~~---~~~~~~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
+...+..|...|.. ++. .-+ ++.+. ..+..++|+|+| -.||||++.-|+..|...|.++.+
T Consensus 53 ~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlL 127 (322)
T TIGR03815 53 GGALWRAAAAVGAEHVAVLPEAEGWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLL 127 (322)
T ss_pred CHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEE
Confidence 44566666766665 442 111 22222 113567888886 458999999999999999887754
No 217
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=58.38 E-value=10 Score=33.26 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=19.7
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
.+|+||| ..||||.+.++.. .|..+
T Consensus 2 ~~igitG~igsGKst~~~~l~~----~g~~v 28 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS----EGFLI 28 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeE
Confidence 4799999 5789999988874 56655
No 218
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=58.32 E-value=8.9 Score=37.93 Aligned_cols=75 Identities=13% Similarity=0.063 Sum_probs=46.0
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCcccc
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFC 119 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~ 119 (363)
+..=|.|+|. .||||.+..++..+..+|..+.+ +..|-....- +.=.+|+=+|.++......-.+++
T Consensus 262 raeGILIAG~PGaGKsTFaqAlAefy~~~GkiVKT---mEsPRDl~v~--------~eITQYs~l~g~me~t~DiLLLvR 330 (604)
T COG1855 262 RAEGILIAGAPGAGKSTFAQALAEFYASQGKIVKT---MESPRDLQVS--------PEITQYSPLEGDMEKTADILLLVR 330 (604)
T ss_pred hhcceEEecCCCCChhHHHHHHHHHHHhcCcEEee---ccCcccccCC--------hhhhhcccccCchhhhccEEEEec
Confidence 3456888884 78999999999999999987744 3334321110 111245556665543333333468
Q ss_pred ccEEEEeC
Q 017969 120 PTVSVVLN 127 (363)
Q Consensus 120 p~i~viTn 127 (363)
||+.|.--
T Consensus 331 PDYTIyDE 338 (604)
T COG1855 331 PDYTIYDE 338 (604)
T ss_pred CCceehhh
Confidence 88877543
No 219
>PLN02422 dephospho-CoA kinase
Probab=57.45 E-value=11 Score=34.10 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=22.0
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
++|+||| ..||||.+.++. +.|..+.....
T Consensus 2 ~~igltG~igsGKstv~~~l~----~~g~~~idaD~ 33 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK----SSGIPVVDADK 33 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH----HCCCeEEehhH
Confidence 4799999 579999998887 35776643333
No 220
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=57.14 E-value=17 Score=36.42 Aligned_cols=32 Identities=34% Similarity=0.379 Sum_probs=28.0
Q ss_pred CCcEEEEeC------CCChHHHHHHHHHHHHhcCCCeE
Q 017969 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 42 ~~~vI~VTG------TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
+.++|.||. .-|||||+.=|++.|.+.|.++.
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l 74 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAI 74 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEE
Confidence 568999999 34999999999999999998763
No 221
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=56.87 E-value=13 Score=34.21 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=24.5
Q ss_pred EEEe--CCCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 46 LAVT--GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 46 I~VT--GTnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
|+|= |--|||||++=|+..|...|.++-..|-
T Consensus 3 IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGC 36 (273)
T PF00142_consen 3 IAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGC 36 (273)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred EEEEcCCCcccChhhhHHHHHHHhccceeeEecc
Confidence 4443 5789999999999999999999866554
No 222
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=56.74 E-value=12 Score=36.68 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=23.1
Q ss_pred EEEEeCC---CChHHHHHHHHHHHHhcCCCe
Q 017969 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 45 vI~VTGT---nGKTTT~~~l~~iL~~~g~~~ 72 (363)
.|.|+|| .||||+|.-|-..|+++|.++
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~V 32 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKV 32 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcc
Confidence 3556665 699999999999999998766
No 223
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=56.74 E-value=14 Score=31.48 Aligned_cols=30 Identities=27% Similarity=0.595 Sum_probs=22.8
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
+|.|+| -.||||++.+|+..| |+++-+.|.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~vsaG~ 33 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKLVSAGT 33 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCceeeccH
Confidence 578888 578999999998876 566655454
No 224
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=56.61 E-value=20 Score=32.97 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=22.5
Q ss_pred CcEEEEe---CCCChHHHHHHH-HHHHHhcCCCe
Q 017969 43 IKILAVT---GTNGKSTVVTFV-GQMLNHLGIEA 72 (363)
Q Consensus 43 ~~vI~VT---GTnGKTTT~~~l-~~iL~~~g~~~ 72 (363)
.++|+|+ |-.||||++.-+ +.+++..|.++
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V 35 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVV 35 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeE
Confidence 3578887 789999999999 55555566663
No 225
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=56.30 E-value=36 Score=26.96 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHhccc----CCcEEEEEcCCCCCC-CCCC--ccchhhhhhhcccCcEEEEEcccchHHHHhhC
Q 017969 277 ATNLEATCTGLMDLK----GHKCVILLGGQAKVL-NGQE--SNGFEKLIEPLNHHRCVITVCALLFLKIVIQF 342 (363)
Q Consensus 277 a~np~s~~~al~~~~----~~~~i~IlG~~~~~g-~~~~--~~~~~~l~~~l~~~~~vi~~G~~~~~~~~~~~ 342 (363)
.-||.++..+++.+. ++.+++++.+..-.| |.|+ ..+|+.|.+. +++.+++.|.++ .++.-.+
T Consensus 2 vKNP~G~n~~l~~i~~~~~~~~~~~~lNd~~aDG~DvSWiWDvdFE~L~~~--~i~~viv~G~Ra-~DmalRL 71 (113)
T PF08353_consen 2 VKNPAGFNEVLDMIASDPGPKSVLIALNDNYADGRDVSWIWDVDFEKLADP--NIKQVIVSGTRA-EDMALRL 71 (113)
T ss_pred CcCcHHHHHHHHHHHhCCCCceEEEEecCCCCCCccceEEeecCHHHHhcC--CCCEEEEEeeeH-HHHHhHe
Confidence 359999999999882 345666777554333 4453 5566666332 478999999996 5666544
No 226
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=56.24 E-value=17 Score=35.15 Aligned_cols=33 Identities=21% Similarity=0.140 Sum_probs=27.7
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+..+|+|+| -.||||....|...|+.. +++++.
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~i 38 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYY 38 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEE
Confidence 567999999 569999999999999988 777654
No 227
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=56.15 E-value=15 Score=30.42 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=21.9
Q ss_pred EEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
|.|+| ..||||.+..|...|...|..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~ 30 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPV 30 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 56666 5799999999999998777654
No 228
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=55.98 E-value=11 Score=33.28 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=20.8
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHH
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
..+|+|.|+ .||||.+.+|+.=|.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 569999995 799999999998776
No 229
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=55.89 E-value=20 Score=35.55 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=25.6
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHH-hcCCCeEee
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLN-HLGIEAFVG 75 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~-~~g~~~~~~ 75 (363)
..+|.++| ..|||||+.-|+..|. ..|.++.+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV 134 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLV 134 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Confidence 45777777 5789999999998886 578877543
No 230
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=55.88 E-value=18 Score=34.05 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=26.2
Q ss_pred EEEEe--CCCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 45 vI~VT--GTnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
+|-++ |-.||||+++.++--+.+.|.++-+.+.
T Consensus 3 ~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~ 37 (305)
T PF02374_consen 3 ILFFGGKGGVGKTTVAAALALALARRGKRTLLVST 37 (305)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEES
T ss_pred EEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeec
Confidence 44444 5899999999999999999999876554
No 231
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=55.83 E-value=5.9 Score=33.09 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=17.2
Q ss_pred EEeCCCChHHHHHHHHHHHHhc
Q 017969 47 AVTGTNGKSTVVTFVGQMLNHL 68 (363)
Q Consensus 47 ~VTGTnGKTTT~~~l~~iL~~~ 68 (363)
||+|| ||||+..+|++-|...
T Consensus 2 GVsG~-GKStvg~~lA~~lg~~ 22 (161)
T COG3265 2 GVSGS-GKSTVGSALAERLGAK 22 (161)
T ss_pred CCCcc-CHHHHHHHHHHHcCCc
Confidence 56664 9999999999988754
No 232
>PRK06761 hypothetical protein; Provisional
Probab=55.48 E-value=11 Score=35.00 Aligned_cols=29 Identities=34% Similarity=0.606 Sum_probs=25.0
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
++|.|+| ..||||++..+..-|...|..+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v 34 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEV 34 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence 5788998 6799999999999998777665
No 233
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=55.14 E-value=9.8 Score=32.76 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=16.6
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 017969 45 ILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 45 vI~VTGT--nGKTTT~~~l~~iL 65 (363)
+|+|||+ .||||.+.++....
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~ 23 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY 23 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc
Confidence 4899994 78999888777653
No 234
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=55.04 E-value=9.6 Score=33.35 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=17.2
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhcCCCe
Q 017969 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 45 vI~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (363)
+|+|||. .||||.+.++.. .|..+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~----~g~~~ 26 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE----LGAFG 26 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH----CCCEE
Confidence 4899995 579998887753 46544
No 235
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=54.62 E-value=19 Score=30.61 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=22.9
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+.++|.|.| -.||||.+..|+.-+ |..+...|
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~---g~~~~~~g 35 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY---GFTHLSTG 35 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh---CCcEEeHH
Confidence 467899999 568999999888755 55543333
No 236
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=54.40 E-value=15 Score=33.25 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=22.9
Q ss_pred EeCCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 48 VTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 48 VTGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
--|..||||++..+++.|...|.++..
T Consensus 10 ~KGGvGKSt~a~~la~~l~~~g~~vl~ 36 (241)
T PRK13886 10 GKGGVGKSFIAATIAQYKASKGQKPLC 36 (241)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCEEE
Confidence 346889999999999999999887744
No 237
>PRK06762 hypothetical protein; Provisional
Probab=53.85 E-value=15 Score=30.70 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.3
Q ss_pred cEEEEeC--CCChHHHHHHHHHHH
Q 017969 44 KILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
++|.|+| ..||||.+..|..-|
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 5899999 679999999998777
No 238
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=53.43 E-value=20 Score=35.56 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=24.6
Q ss_pred EEEEeCC---CChHHHHHHHHHHHHhcCCCeEe
Q 017969 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 45 vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
.|-|||| .|||+++..|.+.|+++|.++..
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~ 35 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQP 35 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEE
Confidence 4556665 69999999999999999987743
No 239
>PRK01184 hypothetical protein; Provisional
Probab=53.10 E-value=19 Score=30.68 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=19.4
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
++|++|| -.||||.+. ++++.|+.+.
T Consensus 2 ~~i~l~G~~GsGKsT~a~----~~~~~g~~~i 29 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK----IAREMGIPVV 29 (184)
T ss_pred cEEEEECCCCCCHHHHHH----HHHHcCCcEE
Confidence 5899999 578999765 4677777663
No 240
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=53.05 E-value=19 Score=32.50 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=22.3
Q ss_pred EEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
|.++| ..||||.+..|+.-|...|.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~ 31 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVI 31 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceE
Confidence 55666 67999999999999987776553
No 241
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=52.99 E-value=11 Score=37.40 Aligned_cols=37 Identities=24% Similarity=0.458 Sum_probs=29.7
Q ss_pred hhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 37 QVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 37 ~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++.+++.-+-|=||| |||-|-..|+.-|+.+|..|.+
T Consensus 16 ~~~NRHGLIaGATGT-GKTvTLqvlAE~fS~~GVPVfl 52 (502)
T PF05872_consen 16 KMANRHGLIAGATGT-GKTVTLQVLAEQFSDAGVPVFL 52 (502)
T ss_pred hhccccceeeccCCC-CceehHHHHHHHhhhcCCcEEE
Confidence 333345667777887 9999999999999999998864
No 242
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=52.27 E-value=18 Score=36.67 Aligned_cols=31 Identities=32% Similarity=0.333 Sum_probs=27.6
Q ss_pred CCcEEEEeC------CCChHHHHHHHHHHHHhcCCCe
Q 017969 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTG------TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
+.++|.||. .-|||||+.=|++.|.+.|.++
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~ 89 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV 89 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce
Confidence 568999999 3489999999999999999876
No 243
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=52.24 E-value=20 Score=29.24 Aligned_cols=50 Identities=16% Similarity=0.293 Sum_probs=35.5
Q ss_pred EEEeCCCChHHHHHHHHHHHHhcCCCeEeec-ccchhhhhhhhhcccCCCCCCCCcEEEEEeCcc
Q 017969 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG-NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY 109 (363)
Q Consensus 46 I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g-nig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~ 109 (363)
....|-.||||++..++..|+..|.++.... ..+.+ .-++|+.|+.++.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~--------------~~~yd~VIiD~p~~ 55 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA--------------NLDYDYIIIDTGAG 55 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC--------------CCCCCEEEEECCCC
Confidence 4456788999999999999999998775432 11111 11278999999854
No 244
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=52.21 E-value=16 Score=32.33 Aligned_cols=44 Identities=30% Similarity=0.445 Sum_probs=23.5
Q ss_pred CCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHH-HHHHHhcCCCe
Q 017969 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV-GQMLNHLGIEA 72 (363)
Q Consensus 25 ~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l-~~iL~~~g~~~ 72 (363)
++|+.=.++-+.. ++.=++|-||| |||+|+..| .++++..+.++
T Consensus 11 ~v~v~l~~~~l~~---~H~~I~G~TGs-GKS~~~~~ll~~l~~~~~~~~ 55 (229)
T PF01935_consen 11 DVPVYLDLNKLFN---RHIAIFGTTGS-GKSNTVKVLLEELLKKKGAKV 55 (229)
T ss_pred CceEEeeHHHhcc---ceEEEECCCCC-CHHHHHHHHHHHHHhcCCCCE
Confidence 4555444532221 23346666665 899887754 45553555444
No 245
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=51.97 E-value=14 Score=32.67 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.5
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 41 ~~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
.+..+.|+-|-| ||||+-.||+.+|.-
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL~P 54 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLLIP 54 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhccC
Confidence 367799999976 699999999999985
No 246
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=51.94 E-value=13 Score=36.54 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=19.2
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
-.+.|+|+| +.||||.+..|+..+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 457899998 789999988777643
No 247
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=51.47 E-value=21 Score=38.40 Aligned_cols=32 Identities=25% Similarity=0.201 Sum_probs=28.7
Q ss_pred CCcEEEEeCCC---ChHHHHHHHHHHHHhcCCCeE
Q 017969 42 SIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 42 ~~~vI~VTGTn---GKTTT~~~l~~iL~~~g~~~~ 73 (363)
+.+.+.||||| |||-++..|.+.++..|.++.
T Consensus 26 ~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~~ 60 (817)
T PLN02974 26 SCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPVL 60 (817)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceE
Confidence 67899999997 999999999999999987663
No 248
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=50.70 E-value=1.6e+02 Score=25.32 Aligned_cols=90 Identities=9% Similarity=0.070 Sum_probs=50.8
Q ss_pred EEEeCCCChH--HHHHHHHHHHHhcCCCeEeecccchhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCc-cccccE
Q 017969 46 LAVTGTNGKS--TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTV 122 (363)
Q Consensus 46 I~VTGTnGKT--TT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~-~~~p~i 122 (363)
|-|+|.-|-+ |+..+|...+...|+.+...-++|.-. +...-++-+-+|.. ...... .-.+|+
T Consensus 5 i~i~G~gGqGv~ta~~il~~a~~~~G~~v~~~~~~g~~~-------------RGG~~~s~vRi~~~-~~~~~~~~~~~D~ 70 (197)
T PRK06274 5 LIIAGVGGQGVLLASRILANAAMNEGFHVRTAETLGMSQ-------------REGSVISHLRFGDE-ISSPLIPEGQADL 70 (197)
T ss_pred EEEEeECCchHHHHHHHHHHHHHHcCCCeEeccccCchh-------------hCCeEEEEEEEcCc-cCCCccCCCCCCE
Confidence 4555555555 556688888888998875555455322 23344455555633 111110 136777
Q ss_pred EEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCC
Q 017969 123 SVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164 (363)
Q Consensus 123 ~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~d 164 (363)
.|..+-. .+ .+.+..+++++++|+|.+
T Consensus 71 lva~d~~-----------~~----~~~~~~l~~gg~ii~ns~ 97 (197)
T PRK06274 71 LLALEPA-----------EV----ARNLHFLKKGGKIIVNAY 97 (197)
T ss_pred EEEcCHH-----------HH----HHHHhhcCCCcEEEEECC
Confidence 7776632 22 123445668999999864
No 249
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=50.29 E-value=15 Score=35.98 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=17.3
Q ss_pred cEEEEeC--CCChHHHHHHHHH
Q 017969 44 KILAVTG--TNGKSTVVTFVGQ 63 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~ 63 (363)
+.|+||| ..||||++.+|+.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~ 23 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE 23 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999 6899999998875
No 250
>PRK05380 pyrG CTP synthetase; Validated
Probab=50.28 E-value=23 Score=35.89 Aligned_cols=32 Identities=28% Similarity=0.490 Sum_probs=28.5
Q ss_pred CcEEEEeC----CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 43 IKILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 43 ~~vI~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
.|.|-||| +-||+.|++-|..+|+.+|+++..
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~ 37 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTI 37 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEE
Confidence 46788999 779999999999999999999853
No 251
>PRK00300 gmk guanylate kinase; Provisional
Probab=50.26 E-value=16 Score=31.67 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+|+|+|.+ ||||.+.+|...+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 56799999975 89999999888764
No 252
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=49.52 E-value=29 Score=35.33 Aligned_cols=32 Identities=38% Similarity=0.508 Sum_probs=28.1
Q ss_pred CCcEEEEeC------CCChHHHHHHHHHHHHhcCCCeE
Q 017969 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 42 ~~~vI~VTG------TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
+.++|.||. .-|||||+.=|+..|.+.|.++.
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvl 91 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTV 91 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 468999999 34899999999999999999874
No 253
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=49.18 E-value=21 Score=30.26 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=20.5
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHh
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNH 67 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~ 67 (363)
.++|.++| ..||||.+..|...+..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 45888998 78999999999887743
No 254
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=48.72 E-value=26 Score=35.51 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=27.5
Q ss_pred cEEEEeC----CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
|.|-||| +-||+.|++-|..+|+.+|+++..
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~ 36 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTI 36 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEE
Confidence 5788888 679999999999999999999853
No 255
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.70 E-value=21 Score=33.62 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=18.1
Q ss_pred CCcEEEEeC--CCChHHHH-HHHHHHHHhc
Q 017969 42 SIKILAVTG--TNGKSTVV-TFVGQMLNHL 68 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~-~~l~~iL~~~ 68 (363)
+.-.|-||| -+|||||- +||.++=+..
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~ 153 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHK 153 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccC
Confidence 445899999 47898885 4666655444
No 256
>PRK00131 aroK shikimate kinase; Reviewed
Probab=48.56 E-value=21 Score=29.70 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.0
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
+.+.|.++| ..||||++..|+.-|.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 456888888 6799999999999883
No 257
>PRK08537 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=48.23 E-value=1.7e+02 Score=24.78 Aligned_cols=150 Identities=15% Similarity=0.198 Sum_probs=75.7
Q ss_pred EEEeCCCChH--HHHHHHHHHHH-hcCCCeEeecccchhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccE
Q 017969 46 LAVTGTNGKS--TVVTFVGQMLN-HLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTV 122 (363)
Q Consensus 46 I~VTGTnGKT--TT~~~l~~iL~-~~g~~~~~~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i 122 (363)
|-|+|.-|=+ |+..+|+..+. ..|+.+...-++|.-. +...-++-+=+|...+..... ..||+
T Consensus 5 i~i~G~gGqGv~ta~~ila~a~~~~~G~~v~~~~~ygs~~-------------RGG~~~~~vris~~~i~s~~~-~~~D~ 70 (177)
T PRK08537 5 IRISGFGGQGIILAGVILGRAAALYDGKYAVQTQSYGPEA-------------RGGASKSEVVISDEEIDYPKV-ISPDI 70 (177)
T ss_pred EEEEEECcHHHHHHHHHHHHHHHHhCCCeEEEccccCccc-------------cCCcEEEEEEECCCcccCccC-CCCCE
Confidence 5566666666 45568888774 6776664333333222 223333444455544433222 46888
Q ss_pred EEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCccEEEeccCCCceeccccccceEEEe
Q 017969 123 SVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202 (363)
Q Consensus 123 ~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (363)
.|..+ +. .+. +....+++++++|+|.+......+......++ +.++
T Consensus 71 lval~--~~---------~~~----~~~~~l~~~g~vi~n~~~~~~~~~~~~~~~~~-------------------~~vp 116 (177)
T PRK08537 71 LVAMS--QE---------AYD----KYLDDLKEGGTVIVDPDLVPIREIEYEKKVKV-------------------YKVP 116 (177)
T ss_pred EEEeC--HH---------HHH----HHHhccCCCeEEEEECCCCCcccccccCCcEE-------------------EEEc
Confidence 87766 21 121 22455668999999864211010000000011 1111
Q ss_pred cCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCC-CHHHHHHHhhcC
Q 017969 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV-DVEALNSTIEIL 252 (363)
Q Consensus 203 ~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi-~~~~i~~~l~~~ 252 (363)
... ......|.-...|..+.- +++..+|+ +.+.+.+++++.
T Consensus 117 ~~~-------iA~~~~g~~~~~N~v~lG--a~~~~~gl~~~e~~~~~i~~~ 158 (177)
T PRK08537 117 FTE-------IAEEEIGLSIVANIVMLG--ALTKLTGIVSKEAIEKAILDS 158 (177)
T ss_pred HHH-------HHHHHcCChHHHHHHHHH--HHHHHhCCCCHHHHHHHHHHH
Confidence 000 011123444455776554 56777898 999999999854
No 258
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=47.33 E-value=22 Score=31.48 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=22.5
Q ss_pred eCCCChHHHHHHHHHHHHhcCCCeEee
Q 017969 49 TGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
.|-.||||++.-++..+.+.|.++.+.
T Consensus 7 ~~g~Gkt~~~~~la~~~a~~g~~~~l~ 33 (217)
T cd02035 7 KGGVGKTTIAAATAVRLAEEGKKVLLV 33 (217)
T ss_pred CCCchHHHHHHHHHHHHHHCCCcEEEE
Confidence 345799999999999999999887543
No 259
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=47.28 E-value=20 Score=32.44 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=26.7
Q ss_pred EEEEe--CCCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 45 vI~VT--GTnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
.|+|= |--|||||++=++..|.+.|.++-..|-
T Consensus 3 ~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGC 37 (278)
T COG1348 3 QIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGC 37 (278)
T ss_pred eEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcC
Confidence 45554 4679999999999999999999866554
No 260
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=46.81 E-value=21 Score=30.29 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=19.3
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHh
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNH 67 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~ 67 (363)
++|.|+| -.||||+...|...|..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4788999 46899999998888754
No 261
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=46.80 E-value=34 Score=29.77 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=25.1
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+.+++.|+|- .||||+...+...+...|.++...+
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 3357777774 4699999999999999998775443
No 262
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=46.75 E-value=26 Score=35.56 Aligned_cols=33 Identities=36% Similarity=0.433 Sum_probs=25.8
Q ss_pred CCCcEEEEeCCC------ChHHHHHHHHHHHHhcCCCeE
Q 017969 41 RSIKILAVTGTN------GKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 41 ~~~~vI~VTGTn------GKTTT~~~l~~iL~~~g~~~~ 73 (363)
.+.+.|.||+.+ |||||+-=|.+.|...|.++.
T Consensus 52 ~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~ 90 (557)
T PF01268_consen 52 PDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAI 90 (557)
T ss_dssp ---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EE
T ss_pred CCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceE
Confidence 367899999976 999999999999999998863
No 263
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=46.52 E-value=25 Score=35.73 Aligned_cols=32 Identities=31% Similarity=0.205 Sum_probs=28.6
Q ss_pred CCcEEEEeCCC------ChHHHHHHHHHHHHhcCCCeE
Q 017969 42 SIKILAVTGTN------GKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 42 ~~~vI~VTGTn------GKTTT~~~l~~iL~~~g~~~~ 73 (363)
+.+.|.||+.+ |||||+-=|.+.|.+.|.++.
T Consensus 62 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~ 99 (587)
T PRK13507 62 DGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVS 99 (587)
T ss_pred CCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceE
Confidence 57899999976 999999999999999998763
No 264
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=46.47 E-value=33 Score=33.86 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=25.0
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHH-HhcCCCeEeec
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQML-NHLGIEAFVGG 76 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL-~~~g~~~~~~g 76 (363)
..+|.++| -.|||||+.-|+.-+ ...|.++.+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit 259 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT 259 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEec
Confidence 45788888 468999999998754 56777775433
No 265
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.45 E-value=25 Score=34.17 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=27.1
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+..+|-+.| -.|||||+.=+++-++..|+++.+.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lv 135 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALV 135 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEE
Confidence 344666666 3589999999999999999998653
No 266
>PRK06217 hypothetical protein; Validated
Probab=45.98 E-value=21 Score=30.55 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=17.5
Q ss_pred EEEEeC--CCChHHHHHHHHHHH
Q 017969 45 ILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL 65 (363)
.|.|+| ..||||.+..|+..|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 477777 469999999999887
No 267
>PLN02327 CTP synthase
Probab=45.82 E-value=28 Score=35.46 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=27.5
Q ss_pred cEEEEeC----CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
|.|-||| +-||+.|++-|..+|+.+|+++..
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~ 36 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTS 36 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCceee
Confidence 5788888 679999999999999999999853
No 268
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=45.65 E-value=26 Score=30.05 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=19.8
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHH
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
.+++.||| -.||||++......|
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 47888888 568999999999988
No 269
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=45.56 E-value=29 Score=37.02 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=28.9
Q ss_pred CCCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEee
Q 017969 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 41 ~~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+..++|+||++ .||||++.-|+..|...|.++.+.
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlI 581 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLI 581 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEE
Confidence 35678999864 689999999999999999887543
No 270
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=45.34 E-value=23 Score=30.82 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=17.7
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHH
Q 017969 43 IKILAVTGTN--GKSTVVTFVGQM 64 (363)
Q Consensus 43 ~~vI~VTGTn--GKTTT~~~l~~i 64 (363)
..+++|||.| ||||...+|...
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHH
Confidence 4699999987 788888888843
No 271
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=45.06 E-value=33 Score=31.24 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 50 GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 50 GTnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
|..||||++.-++..+.+.|.++-+..
T Consensus 9 gG~GKtt~a~~la~~~a~~g~~vLlvd 35 (254)
T cd00550 9 GGVGKTTISAATAVRLAEQGKKVLLVS 35 (254)
T ss_pred CCchHHHHHHHHHHHHHHCCCCceEEe
Confidence 567999999999999999998886544
No 272
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=44.16 E-value=16 Score=30.73 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=20.8
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|.| ||||...+|..++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999986 89998888887665
No 273
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=43.98 E-value=24 Score=32.54 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=17.8
Q ss_pred CCcEEEEeCCCChHHHH-HHHHHHHHhcCC
Q 017969 42 SIKILAVTGTNGKSTVV-TFVGQMLNHLGI 70 (363)
Q Consensus 42 ~~~vI~VTGTnGKTTT~-~~l~~iL~~~g~ 70 (363)
...+.|.+|| |||||. .-+..+|...+.
T Consensus 15 ~~lV~a~AGS-GKT~~l~~ri~~ll~~~~~ 43 (315)
T PF00580_consen 15 PLLVNAGAGS-GKTTTLLERIAYLLYEGGV 43 (315)
T ss_dssp EEEEEE-TTS-SHHHHHHHHHHHHHHTSSS
T ss_pred CEEEEeCCCC-CchHHHHHHHHHhhccccC
Confidence 4456777775 999976 455677766643
No 274
>PRK13975 thymidylate kinase; Provisional
Probab=43.70 E-value=25 Score=30.24 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=20.7
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHh
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNH 67 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~ 67 (363)
.+|.|.| -.||||.+..|+.-|..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999 57899999999999964
No 275
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=43.67 E-value=51 Score=30.91 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=22.2
Q ss_pred HHHHhhCCCCCcEEEEeC--CCChHHHHHHHHHHHHh
Q 017969 33 DFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNH 67 (363)
Q Consensus 33 ~~~~~~~~~~~~vI~VTG--TnGKTTT~~~l~~iL~~ 67 (363)
+++.... +....|.|+| ..||||+...|...+..
T Consensus 123 ~~L~~~v-~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 123 DVLREAV-LARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHHH-HcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3444444 2445777988 56899988877666654
No 276
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=43.61 E-value=22 Score=28.47 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=20.0
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+++|+|.| ||||...+|...+..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CCCEEEEEccCCCccccceeeecccccc
Confidence 56799999988 788887777666553
No 277
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=43.39 E-value=67 Score=29.08 Aligned_cols=55 Identities=9% Similarity=0.012 Sum_probs=39.4
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCC-------CCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhc
Q 017969 233 VLGLDIGVDVEALNSTIEILRTP-------PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMD 289 (363)
Q Consensus 233 a~~~~lgi~~~~i~~~l~~~~~~-------~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~ 289 (363)
.-|...++|.+.|..+|.+..+. +-++|.. .++|+.+|.++.-.|+.-+..-++.
T Consensus 54 ~~Ak~~~~Pkd~IerAIkr~~g~~~~~~~~~~~YEg~--gP~GvaiiVe~lTDN~nRt~~~ir~ 115 (238)
T TIGR01033 54 EKAKAANMPKDNIERAIKKGAGELDGSNYEEITYEGY--APGGVAIIVECLTDNKNRTASEVRS 115 (238)
T ss_pred HHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEE--cCCceEEEEEEecCCHHhHHHHHHH
Confidence 67888999999999999987752 2245555 3688999988866666655544443
No 278
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=43.05 E-value=24 Score=31.35 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=24.2
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
..+|+|-| ..||||++..|+.-|.-.+..+
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldT 35 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDT 35 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecc
Confidence 36899999 7899999999998886555444
No 279
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=43.00 E-value=32 Score=36.31 Aligned_cols=85 Identities=16% Similarity=0.097 Sum_probs=48.6
Q ss_pred EEEEeC--C-CChHHHHHHHHHHHHhcCCCeEeecccch-hhhhhhh-------------hcc--cCCCCCCCCcEEEEE
Q 017969 45 ILAVTG--T-NGKSTVVTFVGQMLNHLGIEAFVGGNLGN-PLSEAAF-------------HCI--ALPSSKPKFQVAVVE 105 (363)
Q Consensus 45 vI~VTG--T-nGKTTT~~~l~~iL~~~g~~~~~~gnig~-p~~~~~~-------------~~~--~~~~~~~~~d~~VlE 105 (363)
.|-|+| | .|||+++.-|.+.|+++|.+++.+--++. |++.... +.+ .......++|+.|+|
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~~~~~~~~~~~~~~~~~~~~I~~~~~~l~~~~D~VLIE 83 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLTMSEVEALLASGQLDELLEEIVARYHALAKDCDVVLVE 83 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCHHHHHHHHhccCChHHHHHHHHHHHHhccCCCEEEEe
Confidence 344544 4 79999999999999999998865432221 2211111 000 000124678999999
Q ss_pred eCccccc----ccC-----ccccccEEEEeCCC
Q 017969 106 VSSYQME----IPN-----KYFCPTVSVVLNLT 129 (363)
Q Consensus 106 ~g~~~l~----~~~-----~~~~p~i~viTnI~ 129 (363)
.+.+.-. ... ..+...+.+|++..
T Consensus 84 Ga~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 84 GLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred CcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 8853211 111 11345677777764
No 280
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=42.59 E-value=49 Score=31.34 Aligned_cols=31 Identities=32% Similarity=0.468 Sum_probs=22.2
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHh-cCCCeEee
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNH-LGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~-~g~~~~~~ 75 (363)
+.|+..||| -.||||. |.++|+. .|.+++..
T Consensus 3 ~ipv~iltGFLGaGKTTl---l~~ll~~~~~~riaVi 36 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTL---LRHILNEQHGYKIAVI 36 (318)
T ss_pred ccCEEEEEECCCCCHHHH---HHHHHhcccCCccccc
Confidence 678999999 7889885 5566654 56666543
No 281
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.41 E-value=21 Score=30.30 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=21.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+++|.|-| ||||...+|..++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEP 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56799999987 899988888877653
No 282
>PLN02759 Formate--tetrahydrofolate ligase
Probab=42.36 E-value=37 Score=34.82 Aligned_cols=31 Identities=29% Similarity=0.249 Sum_probs=27.6
Q ss_pred CCcEEEEeCCC------ChHHHHHHHHHHHHh-cCCCe
Q 017969 42 SIKILAVTGTN------GKSTVVTFVGQMLNH-LGIEA 72 (363)
Q Consensus 42 ~~~vI~VTGTn------GKTTT~~~l~~iL~~-~g~~~ 72 (363)
+.+.|.||+.+ |||||+-=|.+.|.+ .|.++
T Consensus 68 ~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~ 105 (637)
T PLN02759 68 DGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKV 105 (637)
T ss_pred CCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCee
Confidence 57899999976 999999999999997 88776
No 283
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=42.15 E-value=26 Score=36.75 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=45.0
Q ss_pred cCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 11 ~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
++.||=.+.+..++ ++..++.-.+.-..+.+++...| -.||||...-|+..|.....+..++|-
T Consensus 321 Ld~dHYGLekVKeR---IlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGv 386 (782)
T COG0466 321 LDKDHYGLEKVKER---ILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGV 386 (782)
T ss_pred hcccccCchhHHHH---HHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCcc
Confidence 55667777777774 33333332222223678999999 678999999999999988877777765
No 284
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=42.08 E-value=23 Score=31.12 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=21.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|.-++.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 56799999986 89999998887775
No 285
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=41.69 E-value=21 Score=33.32 Aligned_cols=39 Identities=23% Similarity=0.471 Sum_probs=28.1
Q ss_pred CceeeHHHHHHhhCCCCCcEEEEeCCC--ChHHHHHHHHHHHHhc
Q 017969 26 KRVMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (363)
Q Consensus 26 ~~~l~~~~~~~~~~~~~~~vI~VTGTn--GKTTT~~~l~~iL~~~ 68 (363)
..++..+.+-. ++..++|+.|-| ||||+-.+|..+++..
T Consensus 18 ~~~l~~vs~~i----~~Gei~gllG~NGAGKTTllk~l~gl~~p~ 58 (293)
T COG1131 18 KTALDGVSFEV----EPGEIFGLLGPNGAGKTTLLKILAGLLKPT 58 (293)
T ss_pred CEEEeceeEEE----cCCeEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 34555554332 356799999988 6999999999888753
No 286
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=41.68 E-value=29 Score=34.83 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=23.6
Q ss_pred CCcEEEEeCCC---ChHHHHHHHHHHHHhc
Q 017969 42 SIKILAVTGTN---GKSTVVTFVGQMLNHL 68 (363)
Q Consensus 42 ~~~vI~VTGTn---GKTTT~~~l~~iL~~~ 68 (363)
+++.|-||||. |||+++..|.+.|+.+
T Consensus 237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~ 266 (476)
T PRK06278 237 KPKGIILLATGSESGKTFLTTSIAGKLRGK 266 (476)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 46679999974 9999999999999975
No 287
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=41.56 E-value=44 Score=31.76 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=26.3
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
++|.+|| -.||||++.-++--|.+.|.++-+..
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4566665 88999999999999999997764443
No 288
>PF12846 AAA_10: AAA-like domain
Probab=41.50 E-value=28 Score=31.77 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=17.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhcCCCeE
Q 017969 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 45 vI~VTGTnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
++|-||| ||||+...+..-+...|..+.
T Consensus 6 i~G~tGs-GKT~~~~~l~~~~~~~g~~~~ 33 (304)
T PF12846_consen 6 ILGKTGS-GKTTLLKNLLEQLIRRGPRVV 33 (304)
T ss_pred EECCCCC-cHHHHHHHHHHHHHHcCCCEE
Confidence 4444553 899888776666666665553
No 289
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=41.47 E-value=50 Score=30.28 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=14.2
Q ss_pred CCcEEEEeCC--CChHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFV 61 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l 61 (363)
..-.|.|+|. .|||||...+
T Consensus 79 ~~GlilisG~tGSGKTT~l~al 100 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSA 100 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 3458999994 5888887633
No 290
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=41.46 E-value=43 Score=33.16 Aligned_cols=34 Identities=15% Similarity=0.065 Sum_probs=25.1
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHH--hcCCCeEeec
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQMLN--HLGIEAFVGG 76 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL~--~~g~~~~~~g 76 (363)
..+|.+.|. .|||||+.-|+..+. ..|.++.+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 457888884 589999999988876 4567775443
No 291
>PRK04182 cytidylate kinase; Provisional
Probab=41.11 E-value=26 Score=29.39 Aligned_cols=21 Identities=33% Similarity=0.700 Sum_probs=17.7
Q ss_pred EEEEeC--CCChHHHHHHHHHHH
Q 017969 45 ILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL 65 (363)
+|.|+| ..||||.+..|+.-|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 688888 578999999998776
No 292
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=40.90 E-value=48 Score=27.05 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=20.5
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHH
Q 017969 41 RSIKILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
+...+|.+.| -.||||.+..+...|.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3567999999 4689998888877763
No 293
>PLN02318 phosphoribulokinase/uridine kinase
Probab=40.80 E-value=29 Score=35.89 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.3
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
...+|+|+| ..||||++..|...+.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence 457999999 5689999999998874
No 294
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=40.73 E-value=41 Score=29.23 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=15.2
Q ss_pred EEEEeCCC--ChHHHHHHHHHHHH
Q 017969 45 ILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 45 vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
.|.|+|.. ||||+...+..-+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 57888854 69999875544443
No 295
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=40.65 E-value=21 Score=33.50 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..++++.|.| ||||+..+|..++..
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~p 59 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTHP 59 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56799999987 799999999988764
No 296
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=40.35 E-value=31 Score=36.24 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=30.8
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
+.+++..+| -.||||+..-|+..|....+++.++|-
T Consensus 437 qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~ 474 (906)
T KOG2004|consen 437 QGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM 474 (906)
T ss_pred CCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence 678999999 578999999999999988877766654
No 297
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=40.32 E-value=47 Score=33.44 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=23.7
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH-hcC-CCeEe
Q 017969 43 IKILAVTGTN--GKSTVVTFVGQMLN-HLG-IEAFV 74 (363)
Q Consensus 43 ~~vI~VTGTn--GKTTT~~~l~~iL~-~~g-~~~~~ 74 (363)
..+|++.|.| |||||...|+..+. ..| .++++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~L 291 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVAL 291 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEE
Confidence 4688888865 79999999998874 444 35543
No 298
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=40.00 E-value=26 Score=29.89 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.3
Q ss_pred CChHHHHHHHHHHHHhcCCCe
Q 017969 52 NGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 52 nGKTTT~~~l~~iL~~~g~~~ 72 (363)
.||||.+.+|..-|+..|.++
T Consensus 7 sGKtT~~~~L~~~l~~~~~~~ 27 (186)
T PF02223_consen 7 SGKTTQIRLLAEALKEKGYKV 27 (186)
T ss_dssp SSHHHHHHHHHHHHHHTTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCcc
Confidence 699999999999999999764
No 299
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=39.89 E-value=38 Score=29.06 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=20.6
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHh
Q 017969 41 RSIKILAVTGT--NGKSTVVTFVGQMLNH 67 (363)
Q Consensus 41 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~ 67 (363)
+....++|+|. .||||+...|...+..
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 35678999995 4899998887777653
No 300
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=39.86 E-value=38 Score=30.46 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=26.2
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCC
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIE 71 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~ 71 (363)
+|.|.||| ..||||-+.-|...|.+.|.+
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 36889999 899999999999999999955
No 301
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.55 E-value=48 Score=32.39 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=23.2
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHh----cCCCeEeec
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQMLNH----LGIEAFVGG 76 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL~~----~g~~~~~~g 76 (363)
..+|.+.|. .|||||+.-|++.+.. .|.++.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit 213 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT 213 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence 346666663 5899999999988874 356665433
No 302
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=39.50 E-value=36 Score=34.56 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=20.9
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
...+|+|.| ..||||.+..|+.-|
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 557999999 468999999999888
No 303
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=38.98 E-value=26 Score=30.49 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|.| ||||...+|..++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999986 89999888877664
No 304
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=38.86 E-value=30 Score=34.52 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=21.2
Q ss_pred CCCcEEEEeCCCC--hHHHHHHHHHHHH
Q 017969 41 RSIKILAVTGTNG--KSTVVTFVGQMLN 66 (363)
Q Consensus 41 ~~~~vI~VTGTnG--KTTT~~~l~~iL~ 66 (363)
++.+++||-|+|| |||+..+|+--|.
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~ 125 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELK 125 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccc
Confidence 6778999999995 8888887776665
No 305
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.39 E-value=27 Score=30.48 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|-| ||||...+|..++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 66799999976 79998888877664
No 306
>PRK07261 topology modulation protein; Provisional
Probab=38.07 E-value=35 Score=28.92 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=15.0
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 017969 45 ILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 45 vI~VTGT--nGKTTT~~~l~~iL 65 (363)
.|.|+|. .||||.+..|+..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 3666664 48999998876554
No 307
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.83 E-value=26 Score=32.08 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=21.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|.| ||||...+|..++.
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999986 89999999887775
No 308
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=37.66 E-value=18 Score=31.90 Aligned_cols=64 Identities=16% Similarity=0.292 Sum_probs=40.6
Q ss_pred eeeeccccC-CCcHHHHHHHhcCCce--eeHHHHHHhhCC----CCCcEEEEeCCCChHH-HHHHHHHHHHhc
Q 017969 4 LWLFLLEFQ-LKATGLACLLQSGKRV--MSELDFAAQVIP----RSIKILAVTGTNGKST-VVTFVGQMLNHL 68 (363)
Q Consensus 4 ~~~~~~~~~-~~~p~l~~a~~~~~~~--l~~~~~~~~~~~----~~~~vI~VTGTnGKTT-T~~~l~~iL~~~ 68 (363)
+++..+..+ .+.+....|++.++++ .++++..-...+ +..-+|+|+ |+||+= .+..|..-+++.
T Consensus 72 lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iais-T~G~sP~la~~lr~~ie~~ 143 (205)
T TIGR01470 72 LVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAIS-SGGAAPVLARLLRERIETL 143 (205)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEE-CCCCCcHHHHHHHHHHHHh
Confidence 455555555 5667778889999998 777775433222 344578888 888874 344555555443
No 309
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=37.57 E-value=61 Score=29.93 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=28.1
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
+..+|++.| ..||||+...++..+...+.+++....
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~ 111 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 111 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEec
Confidence 447899997 668999999999998877777765443
No 310
>PRK13976 thymidylate kinase; Provisional
Probab=37.35 E-value=57 Score=28.76 Aligned_cols=25 Identities=24% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhc-C
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHL-G 69 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~-g 69 (363)
.|+|-| -.||||.+.+|+.-|+.. |
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g 29 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYG 29 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 466666 579999999999999986 5
No 311
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=37.31 E-value=33 Score=28.49 Aligned_cols=21 Identities=33% Similarity=0.689 Sum_probs=17.1
Q ss_pred EEEEeC--CCChHHHHHHHHHHH
Q 017969 45 ILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL 65 (363)
+|.|+| -.||||++..++.-|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 688999 468999998887765
No 312
>PRK08118 topology modulation protein; Reviewed
Probab=37.17 E-value=40 Score=28.49 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=17.5
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHH
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
+.|.|.| -.||||.+..|+..|.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567776 4689999999988774
No 313
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=37.13 E-value=45 Score=32.08 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=20.6
Q ss_pred CcEEEEeC-CC-ChHHHHHHHHHHHHhcCCCe
Q 017969 43 IKILAVTG-TN-GKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 43 ~~vI~VTG-Tn-GKTTT~~~l~~iL~~~g~~~ 72 (363)
.|.+-|-| |+ ||||.+.+|-.---..|++.
T Consensus 103 GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~P 134 (415)
T KOG2749|consen 103 GPRVMVVGPTDVGKSTLCRILLNYAVKQGRRP 134 (415)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHHcCCcc
Confidence 45555555 66 99999998766555567664
No 314
>PRK13974 thymidylate kinase; Provisional
Probab=37.02 E-value=46 Score=29.26 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=23.1
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCC
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGI 70 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~ 70 (363)
..+|++-| -.||||.+.+|...|...|.
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~ 32 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGL 32 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 45778888 56899999999999987764
No 315
>PRK14029 pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma; Provisional
Probab=36.98 E-value=2.7e+02 Score=23.85 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=50.9
Q ss_pred EEEeCCCChH--HHHHHHHHHHHhcCCCeEeecccchhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEE
Q 017969 46 LAVTGTNGKS--TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS 123 (363)
Q Consensus 46 I~VTGTnGKT--TT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~ 123 (363)
|-|+|.-|=+ |+..+|+.++...|+.+...-.+|.-. +...-++-+=+|..........-+||+.
T Consensus 4 i~i~G~GGqGv~tag~iLa~a~~~~G~~v~~~~~ygs~~-------------RGG~~~~~vRis~~~i~~~~~~~~~Dil 70 (185)
T PRK14029 4 IRFHGRGGQGAVTAANILAEAAFLEGKYVQAFPFFGVER-------------RGAPVTAFTRIDEKPIRIKTQIYEPDVV 70 (185)
T ss_pred EEEEEECcchHHHHHHHHHHHHHhcCCeEEEeeccChhh-------------cCCcEEEEEEEcCCcccCccccCCCCEE
Confidence 4455555544 667799999999998885544444322 2222223333443333322222577887
Q ss_pred EEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCC
Q 017969 124 VVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164 (363)
Q Consensus 124 viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~d 164 (363)
|..+-. . -++.+....+++++.+|+|.+
T Consensus 71 va~~~~-----------~--~~~~~~~~~l~~~g~vi~n~~ 98 (185)
T PRK14029 71 VVLDPS-----------L--LDTVDVTAGLKDGGIVIVNTE 98 (185)
T ss_pred EEcCHH-----------H--hhhchHhhCcCCCcEEEEECC
Confidence 766521 1 112223455668899999864
No 316
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=36.52 E-value=34 Score=30.69 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=22.1
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~ 83 (363)
+|+||| -.||||++.++ .+.|..+. =+.|.|+-
T Consensus 2 iI~i~G~~gsGKstva~~~----~~~g~~~~--~~~~d~ik 36 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFI----IENYNAVK--YQLADPIK 36 (227)
T ss_pred EEEEeCCCCCCHHHHHHHH----HhcCCcEE--EehhHHHH
Confidence 799999 57899988776 55665542 23455554
No 317
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=36.47 E-value=36 Score=29.77 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=23.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhcC
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLG 69 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g 69 (363)
..-.+.|||-| ||||.-++|+-+++...
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~ 56 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLLRPDA 56 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcccCCCC
Confidence 45689999987 59999999999998643
No 318
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=36.45 E-value=32 Score=29.85 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=20.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|-| ||||...+|.-++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 67899999976 89998888876654
No 319
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=36.41 E-value=33 Score=29.40 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=21.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+++|.|-| ||||...+|..++..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 67799999976 599999999888764
No 320
>PRK13695 putative NTPase; Provisional
Probab=36.32 E-value=48 Score=27.92 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=21.7
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhcCCCe
Q 017969 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 45 vI~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (363)
.|++||. .||||....+..-|+..|..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 4788875 579999999888888777653
No 321
>PRK06851 hypothetical protein; Provisional
Probab=36.04 E-value=92 Score=30.18 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=27.2
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
..+++.+|| ..||||+..-+...+.+.|+.+.
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve 62 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVE 62 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 446899999 77899999999999998888763
No 322
>PRK04296 thymidine kinase; Provisional
Probab=35.86 E-value=59 Score=28.05 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=18.8
Q ss_pred cEEEEeCCCChHHHHHHHHHH--HHhcCCCeEe
Q 017969 44 KILAVTGTNGKSTVVTFVGQM--LNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VTGTnGKTTT~~~l~~i--L~~~g~~~~~ 74 (363)
.++-|||..|++-|+.++..+ +..+|.++..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i 35 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLV 35 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 478899985555555555444 4446766643
No 323
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=35.80 E-value=31 Score=31.30 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|-| ||||...+|..++.
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 66799999976 89999999988775
No 324
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=35.63 E-value=41 Score=29.74 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=25.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCC
Q 017969 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQA 303 (363)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~ 303 (363)
+.+.+||++-|.+|+.++..+.-+..+.+++++|+..
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~~ 156 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDPS 156 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE---
T ss_pred ceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCce
Confidence 5567788888999999999999998767889999764
No 325
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=35.31 E-value=27 Score=30.80 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=20.8
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 56799999976 79999988887764
No 326
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=35.26 E-value=26 Score=32.83 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.2
Q ss_pred eCCCChHHHHHHHHHHHHhcC
Q 017969 49 TGTNGKSTVVTFVGQMLNHLG 69 (363)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~g 69 (363)
.|.|||||...+|..++-...
T Consensus 84 ~g~nGKStl~~~l~~l~G~~~ 104 (304)
T TIGR01613 84 NGGNGKSTFQNLLSNLLGDYA 104 (304)
T ss_pred CCCCcHHHHHHHHHHHhChhh
Confidence 579999999999999997654
No 327
>PRK00023 cmk cytidylate kinase; Provisional
Probab=35.19 E-value=45 Score=29.73 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=20.1
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHH
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
..+|+|+|. .||||++.+|+.-|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 468999995 699999999988774
No 328
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=35.17 E-value=28 Score=28.91 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=15.0
Q ss_pred EEeCC--CChHHHHHHHHHHH
Q 017969 47 AVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 47 ~VTGT--nGKTTT~~~l~~iL 65 (363)
.++|- .||||++..|+..|
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 45564 49999999999887
No 329
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=34.77 E-value=43 Score=29.78 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=19.0
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHH
Q 017969 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 44 ~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
.+|+|+|. .||||++.+|+.-|.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 47999994 689999999987664
No 330
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=34.45 E-value=46 Score=34.13 Aligned_cols=31 Identities=39% Similarity=0.424 Sum_probs=27.4
Q ss_pred CCcEEEEeCCC------ChHHHHHHHHHHHH-hcCCCe
Q 017969 42 SIKILAVTGTN------GKSTVVTFVGQMLN-HLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTGTn------GKTTT~~~l~~iL~-~~g~~~ 72 (363)
+.+.|.||+.+ |||||+-=|.+.|. ..|.++
T Consensus 67 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~ 104 (625)
T PTZ00386 67 NGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKT 104 (625)
T ss_pred CCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcce
Confidence 57899999976 99999999999999 678776
No 331
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=34.43 E-value=19 Score=36.53 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=20.6
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHH
Q 017969 41 RSIKILAVTG--TNGKSTVVTFVGQM 64 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~~l~~i 64 (363)
.+.|.|.|.| |.||||+..|+++.
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqA 331 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQA 331 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHh
Confidence 4678888888 99999999999864
No 332
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=34.32 E-value=24 Score=30.07 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=16.5
Q ss_pred CChHHHHHHHHHHHHhcCC
Q 017969 52 NGKSTVVTFVGQMLNHLGI 70 (363)
Q Consensus 52 nGKTTT~~~l~~iL~~~g~ 70 (363)
.||||++..|.+++.+.|.
T Consensus 10 CGKTTva~aL~~LFg~wgH 28 (168)
T PF08303_consen 10 CGKTTVALALSNLFGEWGH 28 (168)
T ss_pred cCHHHHHHHHHHHcCCCCc
Confidence 7999999999999976553
No 333
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=34.29 E-value=34 Score=31.04 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=20.9
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|-| ||||...+|..++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999976 89999998887664
No 334
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=34.20 E-value=2.9e+02 Score=23.32 Aligned_cols=143 Identities=15% Similarity=0.085 Sum_probs=80.3
Q ss_pred EEEeCCCChH--HHHHHHHHHHHhcCCCeEeecccchhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEE
Q 017969 46 LAVTGTNGKS--TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS 123 (363)
Q Consensus 46 I~VTGTnGKT--TT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~ 123 (363)
|-|+|.-|-+ |+..+|+..+...|+.+...-.+|... +..+-++-+=+|........ .-+||+.
T Consensus 3 i~i~G~gGqGv~tag~ila~aa~~~G~~v~~~~~ygs~~-------------RGG~~~~~vris~~~i~s~~-~~~~D~l 68 (170)
T PRK08338 3 IRFAGIGGQGVVLAGVILGEAAAIEGLNVLQTQDYSSAS-------------RGGHSIADVIISKEPIYDVM-VTKADVL 68 (170)
T ss_pred EEEEEECcHHHHHHHHHHHHHHHHcCCCEEEccccChhh-------------cCCeEEEEEEEcCccccCCC-CCCCCEE
Confidence 5577777776 566789999999998886555455322 23333444445654443321 2468888
Q ss_pred EEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCccEEEeccCCCceeccccccceEEEec
Q 017969 124 VVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203 (363)
Q Consensus 124 viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (363)
|.++= +.+. .....+++++.+|+|.+.... ..+.+.+ +.
T Consensus 69 val~~-----------~~~~----~~~~~l~~~g~vi~n~~~~~~-------~~~~~~v-------------------p~ 107 (170)
T PRK08338 69 VALHQ-----------LGYE----TAKSSLKEDGLLIIDTDLVKP-------DRDYIGA-------------------PF 107 (170)
T ss_pred EEcCH-----------HHHH----HHhcccCCCeEEEEeCCCcCC-------cceEEEe-------------------cH
Confidence 77652 2222 234456689999988542100 0011110 00
Q ss_pred CCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCC-CHHHHHHHhhcC
Q 017969 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV-DVEALNSTIEIL 252 (363)
Q Consensus 204 ~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi-~~~~i~~~l~~~ 252 (363)
. .......|.-...|..+.= +++..+|+ +.+.+.+++++.
T Consensus 108 ~-------~ia~~~~g~~~~~N~v~lG--a~~~~~g~~~~e~~~~~i~~~ 148 (170)
T PRK08338 108 T-------RIAEETTGLALTVNMVALG--YLVAKTGVVKKESVEEAIRRR 148 (170)
T ss_pred H-------HHHHHhcCCHHHHHHHHHH--HHHHHhCCCCHHHHHHHHHHH
Confidence 0 0011223444556876554 56777895 999999999864
No 335
>PRK13947 shikimate kinase; Provisional
Probab=34.18 E-value=46 Score=27.75 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=18.0
Q ss_pred EEEEeC--CCChHHHHHHHHHHHH
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
.|.|+| ..||||++..|+..|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 467777 5799999999998883
No 336
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=34.04 E-value=57 Score=31.16 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=17.9
Q ss_pred CCcEEEEeCCCC--hHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTNG--KSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTnG--KTTT~~~l~~iL~ 66 (363)
+...|.|+|..| ||||...+..-+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 456899999655 9999876555443
No 337
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=33.94 E-value=35 Score=29.55 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=20.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|-| ||||...+|.-++.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999976 79998888887765
No 338
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.70 E-value=71 Score=32.64 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=24.5
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhc--CCCeEee
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHL--GIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~--g~~~~~~ 75 (363)
...+|+++| -.|||||...|...+... |.++.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLI 386 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALV 386 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEE
Confidence 457888887 578999999888876654 3455443
No 339
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=33.62 E-value=37 Score=33.61 Aligned_cols=31 Identities=35% Similarity=0.400 Sum_probs=27.6
Q ss_pred CCcEEEEeCCC------ChHHHHHHHHHHHHhcCCCe
Q 017969 42 SIKILAVTGTN------GKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTGTn------GKTTT~~~l~~iL~~~g~~~ 72 (363)
+.+.|.||+-| |||||+-=|.+.|...|.++
T Consensus 51 ~gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~ 87 (554)
T COG2759 51 DGKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKA 87 (554)
T ss_pred CceEEEEEecCCCCCCCCcceeeehHHHHHHhcCchh
Confidence 57899999855 99999999999999998775
No 340
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.58 E-value=34 Score=31.47 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=21.0
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|.| ||||+..+|.-++.
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999976 79999998887665
No 341
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=33.56 E-value=36 Score=29.83 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999986 89998888887764
No 342
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=33.54 E-value=35 Score=29.62 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=20.0
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|.| ||||...+|..++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 67799999975 69998888876654
No 343
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.49 E-value=42 Score=28.91 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=17.9
Q ss_pred CCcEEEEeCCCC--hHHHHHHHHHH
Q 017969 42 SIKILAVTGTNG--KSTVVTFVGQM 64 (363)
Q Consensus 42 ~~~vI~VTGTnG--KTTT~~~l~~i 64 (363)
+..+++|+|.|| |||...+|..+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 567999999775 88877777644
No 344
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=33.47 E-value=49 Score=28.26 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=19.6
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHH
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
..++.|+|. .||||....|...|.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457888885 589999999999875
No 345
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=33.42 E-value=45 Score=29.53 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|.| ||||...+|..++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 66799999976 79998888887654
No 346
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=33.33 E-value=35 Score=30.47 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=20.8
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|.| ||||...+|.-++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999976 79998888887764
No 347
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.99 E-value=37 Score=31.30 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=21.8
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+++|.|-| ||||+..+|.-++..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGLLEA 59 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 67899999986 899999998887753
No 348
>PRK08356 hypothetical protein; Provisional
Probab=32.77 E-value=66 Score=27.73 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=21.6
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
..+|+|+| -.||||.+..|. +.|..+...|
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~----~~g~~~is~~ 36 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE----EKGFCRVSCS 36 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH----HCCCcEEeCC
Confidence 45799999 579999999884 3566553333
No 349
>PRK10908 cell division protein FtsE; Provisional
Probab=32.30 E-value=47 Score=29.20 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=20.9
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 67899999976 89999988887664
No 350
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=31.98 E-value=44 Score=30.49 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|.-++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 56799999975 89999999998875
No 351
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=31.98 E-value=46 Score=28.93 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=19.6
Q ss_pred EEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 45 ILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 45 vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+++|.|.| ||||+...|..++..
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~ 48 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGE 48 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhcc
Confidence 88999987 799999999888753
No 352
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.92 E-value=42 Score=27.71 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=20.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+++|+|.| ||||...+|.-++..
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~ 51 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKP 51 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56799999976 799988888776653
No 353
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.73 E-value=40 Score=29.66 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|-| ||||...+|.-++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999976 79999999887664
No 354
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=31.58 E-value=55 Score=29.53 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=21.8
Q ss_pred CCcEEEEeCCCC--hHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTNG--KSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTnG--KTTT~~~l~~iL~~ 67 (363)
+..+.+|.|-|| |||+...|..+|..
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456889999775 99999999999964
No 355
>PRK13946 shikimate kinase; Provisional
Probab=31.40 E-value=52 Score=28.13 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=19.4
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHH
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
.+.|.++| -.||||+..+|+.-|
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35688888 679999999999988
No 356
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=31.29 E-value=33 Score=30.45 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=21.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+++|+|.| ||||...+|..++..
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56799999976 799999998887763
No 357
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=31.24 E-value=74 Score=22.23 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=20.9
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhcC
Q 017969 44 KILAVTGT--NGKSTVVTFVGQMLNHLG 69 (363)
Q Consensus 44 ~vI~VTGT--nGKTTT~~~l~~iL~~~g 69 (363)
++..|+|- .||||.-..+..+|-...
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 57889995 479999999999987543
No 358
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=31.06 E-value=51 Score=26.95 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=20.0
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|.| ||||...+|..++.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 56799999976 79998888876664
No 359
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.05 E-value=39 Score=29.42 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|-| ||||...+|..++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 66799999965 79998888887654
No 360
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=30.96 E-value=56 Score=28.87 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=26.1
Q ss_pred CCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHh
Q 017969 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLM 288 (363)
Q Consensus 239 gi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~ 288 (363)
+++.++.++.+.+--++.-+.|.- .++.|. |.+++-+..-++
T Consensus 148 ~lse~dAe~Rl~sQmp~~~k~~~a-------~~Vi~N-ng~~~~l~~qv~ 189 (225)
T KOG3220|consen 148 ELSEEDAENRLQSQMPLEKKCELA-------DVVIDN-NGSLEDLYEQVE 189 (225)
T ss_pred cccHHHHHHHHHhcCCHHHHHHhh-------heeecC-CCChHHHHHHHH
Confidence 788888888887765555455433 245554 777776555443
No 361
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=30.84 E-value=71 Score=27.10 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=22.2
Q ss_pred EEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
|.||| -.||||...-+.+.|+..|.++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 67899 4689999998888998777665
No 362
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=30.81 E-value=1.5e+02 Score=25.77 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=13.7
Q ss_pred CCCcEEEEeCCC--ChHHHHHH
Q 017969 41 RSIKILAVTGTN--GKSTVVTF 60 (363)
Q Consensus 41 ~~~~vI~VTGTn--GKTTT~~~ 60 (363)
+..++|+++|.. ||||+..-
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~ 41 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEK 41 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHH
Confidence 467899999965 56554443
No 363
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=30.79 E-value=33 Score=31.01 Aligned_cols=25 Identities=24% Similarity=0.597 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|.| ||||...+|..++.
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 56799999976 79999888887664
No 364
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.75 E-value=50 Score=29.30 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|.| ||||...+|.-++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 56799999976 79999999987775
No 365
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=30.64 E-value=95 Score=28.00 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=37.6
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCC-------CCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHh
Q 017969 233 VLGLDIGVDVEALNSTIEILRTP-------PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLM 288 (363)
Q Consensus 233 a~~~~lgi~~~~i~~~l~~~~~~-------~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~ 288 (363)
.-|...++|.+.|..+|++..+. +.++|..+ ++|+.+|.++.-.|..-+..-++
T Consensus 50 ~~Ak~~nmPk~~IerAIkk~~~~~~~~~~~~~~yEg~g--P~Gvaiive~lTDN~nRt~~~ir 110 (234)
T PF01709_consen 50 EKAKKANMPKDNIERAIKKASGKSDGANYEEITYEGYG--PGGVAIIVECLTDNKNRTVSDIR 110 (234)
T ss_dssp HHHHHTT--HHHHHHHHHHCCSTSST---EEEEEEEEE--TTTEEEEEEEEES-HHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHhcCcCCCCcCceEEEEEEEc--CCCcEEEEEEeCCCHhHHHHHHH
Confidence 77888999999999999988763 23566663 78999998875566665554444
No 366
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=30.60 E-value=44 Score=39.21 Aligned_cols=52 Identities=29% Similarity=0.492 Sum_probs=0.0
Q ss_pred eeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhc-----------------CCCeEeecccchhh
Q 017969 29 MSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHL-----------------GIEAFVGGNLGNPL 82 (363)
Q Consensus 29 l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~-----------------g~~~~~~gnig~p~ 82 (363)
+..+.+-.+.. .+.-.||=||| ||||+..+|+-+|... |++...+.+.|.|+
T Consensus 454 leql~~~Iq~n-ep~LLVGeTGt-GKTT~IQ~La~~l~~kltvin~sqqte~sd~lgGykpIn~~tl~lpl 522 (4600)
T COG5271 454 LEQLLWNIQNN-EPTLLVGETGT-GKTTMIQYLALKLHFKLTVINKSQQTEMSDDLGGYKPINGSTLGLPL 522 (4600)
T ss_pred HHHHHHHhccC-CceEEEecCCC-chhhHHHHHHHHhhhhheehhhhhhccchhhcCCcccCCCcccccch
No 367
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=30.51 E-value=74 Score=29.52 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=20.8
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHh
Q 017969 41 RSIKILAVTG--TNGKSTVVTFVGQMLNH 67 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~ 67 (363)
...-++++.| |.||||+..+..++.-.
T Consensus 191 ~~~~~~hl~G~Ss~GKTt~~~~a~Sv~G~ 219 (286)
T PF06048_consen 191 VEGFGFHLYGQSSSGKTTALQLAASVWGN 219 (286)
T ss_pred CCceEEEEEeCCCCCHHHHHHHhhhhCcC
Confidence 3456899999 78999998888776643
No 368
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=30.44 E-value=75 Score=32.08 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=13.7
Q ss_pred CCcEEEEeC--CCChHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVT 59 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~ 59 (363)
+.-+|.||| -.|||||..
T Consensus 241 ~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 344899999 458999886
No 369
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=30.40 E-value=42 Score=29.35 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|-| ||||...+|..++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999976 69998888887765
No 370
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=30.36 E-value=48 Score=26.59 Aligned_cols=21 Identities=43% Similarity=0.736 Sum_probs=16.2
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 017969 45 ILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 45 vI~VTGT--nGKTTT~~~l~~iL 65 (363)
+|.|+|. .||||.+..|+.-|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 4778885 47999988888766
No 371
>PRK14709 hypothetical protein; Provisional
Probab=30.34 E-value=35 Score=34.25 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=17.8
Q ss_pred eCCCChHHHHHHHHHHHHhc
Q 017969 49 TGTNGKSTVVTFVGQMLNHL 68 (363)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~ 68 (363)
+|.|||||...+|..+|-..
T Consensus 213 ~G~NGKSt~~~~i~~llG~~ 232 (469)
T PRK14709 213 GGGNGKSVFLNVLAGILGDY 232 (469)
T ss_pred CCCCcHHHHHHHHHHHHhhh
Confidence 57899999999999999754
No 372
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=30.32 E-value=43 Score=29.85 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|-| ||||...+|..++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 67799999976 79998888876664
No 373
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=30.25 E-value=56 Score=28.79 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=17.7
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHH
Q 017969 43 IKILAVTGTN--GKSTVVTFVGQM 64 (363)
Q Consensus 43 ~~vI~VTGTn--GKTTT~~~l~~i 64 (363)
..+++|-|.| ||||+-.+|..+
T Consensus 25 ~~i~~ivGpNGaGKSTll~~i~~~ 48 (212)
T cd03274 25 KSFSAIVGPNGSGKSNVIDSMLFV 48 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 3689999987 799998888644
No 374
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=30.24 E-value=52 Score=27.87 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=21.4
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhc
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHL 68 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~ 68 (363)
...+..|+|- .||||+...|..+|...
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~~ 46 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALGGQ 46 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHHSS
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3468888884 48999999999999754
No 375
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=30.20 E-value=73 Score=30.75 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhc
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHL 68 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~ 68 (363)
+.+++.++| -.||||.+..|+.-|...
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~y 105 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEEY 105 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 457899999 789999999999999863
No 376
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=30.18 E-value=47 Score=29.65 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|.| ||||...+|..++.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 56799999976 79998888877664
No 377
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=30.16 E-value=46 Score=28.98 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=20.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 66799999976 79998888887765
No 378
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=30.15 E-value=58 Score=27.22 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=17.6
Q ss_pred cEEEEeC--CCChHHHHHHHHHHH
Q 017969 44 KILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
+.|.|+| ..||||++..|+.-|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 3466776 569999999999887
No 379
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=30.11 E-value=38 Score=29.29 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.0
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL 65 (363)
+..+++|+|.| ||||...+|+.++
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999986 8999888887766
No 380
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=30.10 E-value=55 Score=29.23 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=21.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 45 vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++|.+|| ||||-++-+.+=....|+++..
T Consensus 8 V~GpAgS-GKSTyC~~~~~h~e~~gRs~~v 36 (273)
T KOG1534|consen 8 VMGPAGS-GKSTYCSSMYEHCETVGRSVHV 36 (273)
T ss_pred EEccCCC-CcchHHHHHHHHHHhhCceeEE
Confidence 5666664 9999998877777778877644
No 381
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.04 E-value=44 Score=30.06 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=20.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|.| ||||...+|.-++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 56799999976 79998888887764
No 382
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=30.04 E-value=33 Score=31.34 Aligned_cols=39 Identities=31% Similarity=0.391 Sum_probs=28.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh-cCCCeEeecccchhhhh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH-LGIEAFVGGNLGNPLSE 84 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~-~g~~~~~~gnig~p~~~ 84 (363)
...+.|.-|-| |||||-+||-.+|.. .|. .+-.|.|++.
T Consensus 27 ~G~i~GllG~NGAGKTTtfRmILglle~~~G~----I~~~g~~~~~ 68 (300)
T COG4152 27 PGEIFGLLGPNGAGKTTTFRMILGLLEPTEGE----ITWNGGPLSQ 68 (300)
T ss_pred CCeEEEeecCCCCCccchHHHHhccCCccCce----EEEcCcchhh
Confidence 56789999976 699999999999986 443 2334545543
No 383
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=30.02 E-value=43 Score=28.69 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=16.7
Q ss_pred EEEEeC--CCChHHHHHHHHHHH
Q 017969 45 ILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL 65 (363)
+|.|.| ..||||.+..|+.-+
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 377888 579999999998753
No 384
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=29.97 E-value=50 Score=29.93 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=19.4
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQM 64 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~i 64 (363)
..|.|+|.| +.||||+...|...
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCC
Confidence 678899999 88999998877764
No 385
>PRK00110 hypothetical protein; Validated
Probab=29.86 E-value=1.5e+02 Score=26.93 Aligned_cols=53 Identities=11% Similarity=0.050 Sum_probs=36.6
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCC-------CCeeEEEEeecCCEEEEEcCCCCCHHHHHHHH
Q 017969 233 VLGLDIGVDVEALNSTIEILRTP-------PHRMQIVHRDIQGVTWVDDSKATNLEATCTGL 287 (363)
Q Consensus 233 a~~~~lgi~~~~i~~~l~~~~~~-------~gR~e~~~~~~~~~~iidD~~a~np~s~~~al 287 (363)
.-|...++|.+.|.++|++..+. +-|+|-. .++|+.+|.++.-.|..-+.+-+
T Consensus 54 ~~Ak~~nmPkd~IerAIkk~~g~~~~~~~~e~~YEg~--gP~GvaiiVe~lTDN~nRt~~~v 113 (245)
T PRK00110 54 DKAKAANMPKDNIERAIKKGTGELDGANYEEIRYEGY--GPGGVAIIVEALTDNRNRTAAEV 113 (245)
T ss_pred HHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEE--cCCCeEEEEEEecCCHHHHHHHH
Confidence 67888999999999999988752 2244444 36888888887444554443333
No 386
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=29.72 E-value=1e+02 Score=23.88 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=22.4
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
..+.+.|+| -.|||++...+..-+...+..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v 50 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPF 50 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCe
Confidence 356788888 5789999888888776444333
No 387
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.68 E-value=47 Score=29.51 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=21.8
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+++|+|-| ||||...+|+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56799999986 899999988877753
No 388
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=29.66 E-value=39 Score=31.75 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.0
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHH
Q 017969 41 RSIKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
.+...|.++| -.||||+..+|+.-|
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 3566899999 679999999998877
No 389
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=29.65 E-value=46 Score=29.89 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|.-++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999976 79998888887664
No 390
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=29.62 E-value=41 Score=31.38 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=20.8
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..++++.|-| ||||+..+|..++.
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999976 79999999887765
No 391
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.56 E-value=49 Score=29.59 Aligned_cols=25 Identities=20% Similarity=0.525 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 66799999976 79998888877664
No 392
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.39 E-value=59 Score=29.45 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|.| ||||...+|..++.
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 56799999976 79999999998875
No 393
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=29.34 E-value=3.5e+02 Score=22.87 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=53.0
Q ss_pred EEEeCCCChH--HHHHHHHHHHHhcCCCeEeecccchhhhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEE
Q 017969 46 LAVTGTNGKS--TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS 123 (363)
Q Consensus 46 I~VTGTnGKT--TT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~ 123 (363)
|-++|.-|-+ |+..+++.++...|+.+...-.+|.-. +...-++-+=+|...+.......+||+.
T Consensus 4 i~i~G~gGqGv~~ag~ila~a~~~~G~~v~~~~~ygs~~-------------rGg~~~~~vris~~~i~~~s~~~~~D~l 70 (177)
T TIGR02175 4 IRFHGRGGQGAVTASQLLAEAAFLEGKYAQAFPEFGAER-------------RGAPVRAFLRISDRPIRVHSQIYEPDYV 70 (177)
T ss_pred EEEEeECcchHHHHHHHHHHHHHhcCceEEEeeccCchh-------------cCCcEEEEEEEcCccccCCCccCCCCEE
Confidence 5566666665 566789999999998876555555322 2223333344565544322222578888
Q ss_pred EEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCC
Q 017969 124 VVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164 (363)
Q Consensus 124 viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~d 164 (363)
+..|= +=++. .+....+++++++|+|.+
T Consensus 71 va~~~--~~~~~-----------~~~~~~l~~gg~ii~d~~ 98 (177)
T TIGR02175 71 VVLDP--TLLKT-----------VNVTAGLKEDGILIVNTK 98 (177)
T ss_pred EEcCH--HHhCc-----------cchhhCcCCCeEEEEECC
Confidence 87772 11110 112244568999999864
No 394
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=29.30 E-value=45 Score=27.91 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=21.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+++|.|-| ||||...+|.-++..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 66799999976 899999998877653
No 395
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=29.18 E-value=60 Score=28.15 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.0
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 66799999975 89999998887765
No 396
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.16 E-value=46 Score=29.78 Aligned_cols=25 Identities=24% Similarity=0.602 Sum_probs=20.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|.| ||||...+|..++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999975 79998888887664
No 397
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=29.13 E-value=55 Score=27.52 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=16.9
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHH
Q 017969 44 KILAVTGTN--GKSTVVTFVGQML 65 (363)
Q Consensus 44 ~vI~VTGTn--GKTTT~~~l~~iL 65 (363)
++|+|.|.+ ||||.+..|...+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999965 7999877777644
No 398
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=29.13 E-value=56 Score=27.66 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+++|+|.| ||||...+|.-++..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 54 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP 54 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 56799999976 699988888877643
No 399
>COG3910 Predicted ATPase [General function prediction only]
Probab=29.11 E-value=38 Score=29.74 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=26.5
Q ss_pred CcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCC--ChHHHHHHHHH
Q 017969 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQ 63 (363)
Q Consensus 14 ~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTn--GKTTT~~~l~~ 63 (363)
++|+..+.---.+|++..++.- +..+.|+-.|||-| ||||...-|+.
T Consensus 11 ekve~~~eYp~slPa~r~l~~~---LeF~apIT~i~GENGsGKSTLLEaiA~ 59 (233)
T COG3910 11 EKVESFEEYPFSLPAFRHLEER---LEFRAPITFITGENGSGKSTLLEAIAA 59 (233)
T ss_pred hcccchhhCcccchHHHhhhhh---ccccCceEEEEcCCCccHHHHHHHHHh
Confidence 3444333333345666555542 22467899999977 57776555443
No 400
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=28.97 E-value=45 Score=27.18 Aligned_cols=20 Identities=40% Similarity=0.514 Sum_probs=15.1
Q ss_pred EEEeC--CCChHHHHHHHHHHH
Q 017969 46 LAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL 65 (363)
|.++| -.||||++..|...+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 45556 359999999988875
No 401
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.82 E-value=84 Score=30.53 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=23.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH-hcC-CCeEee
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN-HLG-IEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~-~~g-~~~~~~ 75 (363)
+..+|++.|.+ |||||...|+.-+. ..| .++++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~li 173 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALL 173 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 35688888854 79999999987654 345 455443
No 402
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=28.74 E-value=52 Score=27.93 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=21.0
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+++|.|-| ||||...+|.-++..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~ 51 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 66799999975 799988888877653
No 403
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=28.67 E-value=62 Score=28.84 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=20.4
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 43 ~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
..+.+|.|-| ||||+..+|.-+|.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~ 48 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLS 48 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4589999977 79999999998775
No 404
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=28.59 E-value=42 Score=32.09 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+++|.|-| ||||...+|..++..
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~p 57 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLERP 57 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 56799999976 899999999888753
No 405
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=28.58 E-value=46 Score=29.00 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|+.++.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999976 79998888887664
No 406
>PRK12338 hypothetical protein; Provisional
Probab=28.25 E-value=58 Score=30.88 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=20.5
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
+..+|.|+|+ .||||.+..|+.-|.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCC
Confidence 3468999995 689999999988873
No 407
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.21 E-value=60 Score=27.28 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=21.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+++|+|.| ||||...+|.-++..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 66799999976 799988888887754
No 408
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=28.15 E-value=59 Score=28.49 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=19.9
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|.| ||||...+|+.++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 56799999976 78888888876654
No 409
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=27.96 E-value=55 Score=28.61 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=20.0
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|.| ||||...+|..++.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 56799999976 69998888877664
No 410
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=27.75 E-value=49 Score=30.14 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=25.1
Q ss_pred ceeeHHHHHHhhCCCCCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 27 RVMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 27 ~~l~~~~~~~~~~~~~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+++..+.+-. .+..+++|.|.| ||||...+|+.++.
T Consensus 25 ~il~~isl~i----~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 25 PVLTNVSLSI----EEGETVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred EEeeCceeEE----cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4555554322 366799999976 79998888887664
No 411
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=27.67 E-value=51 Score=29.81 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=21.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+++|.|-| ||||...+|.-++..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 58 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARLAP 58 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 67799999975 799999998887753
No 412
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=27.59 E-value=47 Score=29.47 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 56799999976 79998888876664
No 413
>PRK03839 putative kinase; Provisional
Probab=27.51 E-value=67 Score=27.16 Aligned_cols=21 Identities=43% Similarity=0.683 Sum_probs=16.6
Q ss_pred EEEEeC--CCChHHHHHHHHHHH
Q 017969 45 ILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL 65 (363)
.|.|+| -.||||.+..|+.-|
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 366676 469999999998887
No 414
>PF13173 AAA_14: AAA domain
Probab=27.38 E-value=74 Score=25.23 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=15.9
Q ss_pred CcEEEEeC--CCChHHHHHHHHH
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQ 63 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~ 63 (363)
.+++.|+| -.||||+..-+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~ 24 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAK 24 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999 6899998755443
No 415
>PRK12378 hypothetical protein; Provisional
Probab=27.18 E-value=2.5e+02 Score=25.41 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=36.3
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCC------CCeeEEEEeecCCEEEEEcCCCCCHHHHHHHH
Q 017969 233 VLGLDIGVDVEALNSTIEILRTP------PHRMQIVHRDIQGVTWVDDSKATNLEATCTGL 287 (363)
Q Consensus 233 a~~~~lgi~~~~i~~~l~~~~~~------~gR~e~~~~~~~~~~iidD~~a~np~s~~~al 287 (363)
.-|...++|.+.|.++|.+-.+. .-++|-. ..+|+.+|.++.-.|..-+.+-+
T Consensus 52 ~~Ak~~nmPkd~IerAIkk~~g~~~~~~~e~~YEgy--gPgGvaiiVe~lTDN~nRt~~~v 110 (235)
T PRK12378 52 ERAKKANVPKDVIERAIKKAKGGGGEDYEEVRYEGF--GPNGVMVIVECLTDNVNRTVANV 110 (235)
T ss_pred HHHHHhCCCHHHHHHHHHhccCCCCCceEEEEEEEE--cCCCcEEEEEECCCCHHHHHHHH
Confidence 67888999999999999987653 2244444 36888888887555555443333
No 416
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.03 E-value=52 Score=29.36 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=20.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999976 79998888877664
No 417
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=26.93 E-value=66 Score=30.55 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=18.2
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHH
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
.+.|+|+| +.||||.+..|...+
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~ 186 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVF 186 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45889998 568999888888755
No 418
>PRK14530 adenylate kinase; Provisional
Probab=26.82 E-value=70 Score=28.07 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=18.0
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017969 44 KILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 44 ~vI~VTGT--nGKTTT~~~l~~iL 65 (363)
+.|.|.|. .||||.+..|+..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 46888884 68999999998777
No 419
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=26.74 E-value=71 Score=34.35 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=23.9
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
+.+++.+.| -.||||++..++..+.....++
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i 380 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRM 380 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 456888888 5689999999999887554444
No 420
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=26.70 E-value=60 Score=24.98 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=19.7
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhcC
Q 017969 44 KILAVTGT--NGKSTVVTFVGQMLNHLG 69 (363)
Q Consensus 44 ~vI~VTGT--nGKTTT~~~l~~iL~~~g 69 (363)
..+.|.|. .||||++..+...+...+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 46777774 579999888888887764
No 421
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=26.68 E-value=92 Score=33.28 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=24.3
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH-hcC-CCeEee
Q 017969 43 IKILAVTGTN--GKSTVVTFVGQMLN-HLG-IEAFVG 75 (363)
Q Consensus 43 ~~vI~VTGTn--GKTTT~~~l~~iL~-~~g-~~~~~~ 75 (363)
..+|++.|.| |||||...|+..+. ..| .++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~li 221 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALL 221 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEe
Confidence 4688888865 79999999998884 455 466543
No 422
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=26.64 E-value=83 Score=27.61 Aligned_cols=28 Identities=32% Similarity=0.573 Sum_probs=20.0
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHH--HHhcC
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQM--LNHLG 69 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~i--L~~~g 69 (363)
+..+++|||.| ||||...++..+ |.+.|
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~G 59 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIG 59 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcC
Confidence 44799999975 899987877544 44444
No 423
>PRK10536 hypothetical protein; Provisional
Probab=26.39 E-value=1.2e+02 Score=27.99 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCC
Q 017969 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQA 303 (363)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~ 303 (363)
+.+.|||.+-+.+|..++..+..+..+..+++.|+..
T Consensus 177 ~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~~ 213 (262)
T PRK10536 177 NAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDIT 213 (262)
T ss_pred CCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCChh
Confidence 5688888888899999999999998777888899764
No 424
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=26.38 E-value=1.1e+02 Score=29.83 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=27.9
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
...+|.|-| =.||||.+.+|+.-|-+.|++++.
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~i 106 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAI 106 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEE
Confidence 456777777 579999999999999999988764
No 425
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.35 E-value=53 Score=29.52 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|.| ||||...+|+.++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (252)
T PRK14272 29 RGTVNALIGPSGCGKTTFLRAINRMHD 55 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 66799999976 79999999988775
No 426
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=26.35 E-value=1e+02 Score=29.25 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=19.3
Q ss_pred HHHHhhCCCCCcEEEEeC--CCChHHHHHHHHHHH
Q 017969 33 DFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 33 ~~~~~~~~~~~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
+++.... +...-|.|+| ..||||+...|...+
T Consensus 135 ~~L~~~v-~~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 135 SVIRSAI-DSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHHHHHH-HcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3444443 2344677888 578999876554444
No 427
>PRK00625 shikimate kinase; Provisional
Probab=25.98 E-value=69 Score=27.30 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=16.6
Q ss_pred EEEeC--CCChHHHHHHHHHHHH
Q 017969 46 LAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL~ 66 (363)
|.++| -.||||++.+|+.-|.
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 55666 4699999999988774
No 428
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=25.96 E-value=1.1e+02 Score=31.68 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=26.3
Q ss_pred hhCCCCCcEEEEeC--CCChHHHHHHHHHHHHhc
Q 017969 37 QVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHL 68 (363)
Q Consensus 37 ~~~~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~ 68 (363)
+....+.+++...| ..||||.+..|+..|++.
T Consensus 97 ~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 97 QGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred HhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 33334667888888 789999999999999987
No 429
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=25.93 E-value=1.4e+02 Score=27.90 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=20.6
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHHhc
Q 017969 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (363)
Q Consensus 41 ~~~~vI~VTGTn--GKTTT~~~l~~iL~~~ 68 (363)
++..+|.|+|++ ||||....+...|...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS 131 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 467899999975 6888776666666544
No 430
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=25.74 E-value=81 Score=28.04 Aligned_cols=28 Identities=32% Similarity=0.660 Sum_probs=20.7
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHH--HHhcC
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQM--LNHLG 69 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~i--L~~~g 69 (363)
+..++.|||. .||||...++..+ |.+.|
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g 60 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIG 60 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhC
Confidence 4569999996 5999988887643 44555
No 431
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=25.72 E-value=51 Score=31.27 Aligned_cols=36 Identities=14% Similarity=0.420 Sum_probs=26.3
Q ss_pred ceeeHHHHHHhhCCCCCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 27 RVMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 27 ~~l~~~~~~~~~~~~~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+++..+.+-. .+..+++|.|-| ||||+..+|..++.
T Consensus 21 ~~l~~vsl~i----~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 21 RAVDRISYSV----KQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred EEEeeeEEEE----CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4555554221 367899999976 79999999988886
No 432
>PRK13949 shikimate kinase; Provisional
Probab=25.72 E-value=76 Score=26.83 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=18.1
Q ss_pred EEEEeC--CCChHHHHHHHHHHHH
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
.|.|.| -.||||+..+|+..|.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 477777 4689999999999885
No 433
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=25.60 E-value=64 Score=25.12 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=16.6
Q ss_pred EEEeCC--CChHHHHHHHHHHHH
Q 017969 46 LAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 46 I~VTGT--nGKTTT~~~l~~iL~ 66 (363)
|-+.|- .||||++..+++.|.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 345664 799999999999884
No 434
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=25.58 E-value=75 Score=27.76 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=19.5
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 43 IKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 43 ~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
..+++|.|.| ||||....|...|..
T Consensus 22 ~g~~~i~G~NGsGKTTLl~ai~~~l~G 48 (204)
T cd03240 22 SPLTLIVGQNGAGKTTIIEALKYALTG 48 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3489999977 799988888777653
No 435
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.49 E-value=60 Score=30.05 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=20.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|.| ||||...+|..++.
T Consensus 64 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 90 (286)
T PRK14275 64 SKYVTAIIGPSGCGKSTFLRAINRMND 90 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 56799999976 79999998887653
No 436
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=25.48 E-value=1e+02 Score=24.80 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=20.7
Q ss_pred EEEeCC--CChHHHHHHHHHHHHhcCCCeEe
Q 017969 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 46 I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
+.|+|. .||||.+..+...+...|.++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~ 32 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVY 32 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 456663 48999999888888776665543
No 437
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=25.48 E-value=40 Score=29.63 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=17.5
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 017969 43 IKILAVTGTN--GKSTVVTFVGQML 65 (363)
Q Consensus 43 ~~vI~VTGTn--GKTTT~~~l~~iL 65 (363)
..+++|.|-| ||||+...|...|
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~~~l 52 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAITYAL 52 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHheeeE
Confidence 4589999977 7899888876444
No 438
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.40 E-value=52 Score=29.61 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=20.9
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 56799999976 79998888888775
No 439
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=25.38 E-value=56 Score=29.39 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|-| ||||...+|.-++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999976 79998888876664
No 440
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=25.36 E-value=69 Score=29.87 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=17.1
Q ss_pred CCcEEEEeC--CCChHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVG 62 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~ 62 (363)
..++|.||| ..||||+...|.
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH
Confidence 456899999 578999988885
No 441
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=25.35 E-value=79 Score=32.61 Aligned_cols=55 Identities=25% Similarity=0.207 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCc---eeeHHHHH---HhhCC---CCCcEEEEeC--CCChHHHHHHHHHHHHh-cCC
Q 017969 16 TGLACLLQSGKR---VMSELDFA---AQVIP---RSIKILAVTG--TNGKSTVVTFVGQMLNH-LGI 70 (363)
Q Consensus 16 p~l~~a~~~~~~---~l~~~~~~---~~~~~---~~~~vI~VTG--TnGKTTT~~~l~~iL~~-~g~ 70 (363)
-.+.+....|.. .+++.|.+ .+.++ ++..+|.+|| -.||||.+..|+..|.. .|.
T Consensus 356 t~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~ 422 (568)
T PRK05537 356 TELRRRLREGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGR 422 (568)
T ss_pred HHHHHHHHCCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCc
Confidence 345555666654 35565533 33322 3455899999 78999999999999986 443
No 442
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.27 E-value=53 Score=30.16 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|-| ||||...+|..++.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 58 (280)
T PRK13649 32 DGSYTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999976 79998888887664
No 443
>PRK13948 shikimate kinase; Provisional
Probab=25.27 E-value=84 Score=27.06 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=20.2
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
....|.++| -.||||+..+|+.-|.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 445677888 6899999999998874
No 444
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=25.21 E-value=52 Score=27.19 Aligned_cols=16 Identities=44% Similarity=0.750 Sum_probs=11.1
Q ss_pred EEEeC--CCChHHHHHHH
Q 017969 46 LAVTG--TNGKSTVVTFV 61 (363)
Q Consensus 46 I~VTG--TnGKTTT~~~l 61 (363)
|+|.| +.||||....|
T Consensus 1 V~v~G~~ssGKSTliNaL 18 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINAL 18 (168)
T ss_dssp EEEEEBTTSSHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHH
Confidence 56677 78999864433
No 445
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=25.18 E-value=59 Score=27.72 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=17.2
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
+...|+|.| .+||||+..-|..-.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~ 27 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKA 27 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhc
Confidence 456899999 689999766554433
No 446
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=24.90 E-value=88 Score=28.17 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=40.3
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhh----cccCCCCCCCCcEEEEEeCcc
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFH----CIALPSSKPKFQVAVVEVSSY 109 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~----~~~~~~~~~~~d~~VlE~g~~ 109 (363)
..-+|.+.| +.||+.+..-|..-|...|+++.. ++.|-...... ++. ....+.-+++|+-=|-+
T Consensus 30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~---~~~pt~eE~~~p~lwRfw-~~lP~~G~i~IF~rSwY 99 (230)
T TIGR03707 30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVA---LPKPSDRERTQWYFQRYV-QHLPAAGEIVLFDRSWY 99 (230)
T ss_pred CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEe---CCCCCHHHHcChHHHHHH-HhCCCCCeEEEEeCchh
Confidence 345788888 999999999999999999988854 44444332210 000 01233446778776643
No 447
>PRK14528 adenylate kinase; Provisional
Probab=24.55 E-value=1.2e+02 Score=25.96 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=17.6
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017969 44 KILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 44 ~vI~VTGT--nGKTTT~~~l~~iL 65 (363)
+.|.|+|. .||||.+..|+.-+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 45778885 69999999998766
No 448
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=24.36 E-value=80 Score=28.71 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.4
Q ss_pred CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 51 TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 51 TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
..||||-+.=..++|++.|+++.+
T Consensus 12 gSGKsTYc~g~~~fls~~gr~~~v 35 (290)
T KOG1533|consen 12 GSGKSTYCNGMSQFLSAIGRPVAV 35 (290)
T ss_pred CCCccchhhhHHHHHHHhCCceEE
Confidence 579999999999999999987754
No 449
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=24.23 E-value=86 Score=35.53 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=12.1
Q ss_pred EEEeCCCC--hHHHHHHHH
Q 017969 46 LAVTGTNG--KSTVVTFVG 62 (363)
Q Consensus 46 I~VTGTnG--KTTT~~~l~ 62 (363)
++|+|||| |||+-++|=
T Consensus 20 t~i~GTNG~GKTTlLRlip 38 (1201)
T PF12128_consen 20 THICGTNGVGKTTLLRLIP 38 (1201)
T ss_pred eeeecCCCCcHHHHHHHHH
Confidence 78999985 777655543
No 450
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.14 E-value=65 Score=29.55 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.8
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|.-++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (274)
T PRK13644 27 KGEYIGIIGKNGSGKSTLALHLNGLLR 53 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 66799999976 79998888887765
No 451
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=24.08 E-value=66 Score=29.37 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|-| ||||...+|..++.
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 63 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGLES 63 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999965 79998888886654
No 452
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=24.04 E-value=64 Score=29.15 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|.| ||||...+|..++.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 66799999965 79999888887765
No 453
>PF05729 NACHT: NACHT domain
Probab=23.95 E-value=1.1e+02 Score=24.87 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=19.8
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcC
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLG 69 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g 69 (363)
++.|+| -.||||+...+..-+...+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 566777 4689999999888888765
No 454
>PRK13764 ATPase; Provisional
Probab=23.91 E-value=1.4e+02 Score=31.14 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=23.1
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
..-|.|+| ..||||+...|...+...+..+
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV 288 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIV 288 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEE
Confidence 45688998 5799999988887777766554
No 455
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=23.91 E-value=69 Score=28.56 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|.-++.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999976 79998888887764
No 456
>PRK10436 hypothetical protein; Provisional
Probab=23.83 E-value=1.1e+02 Score=30.60 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=15.3
Q ss_pred CCcEEEEeC--CCChHHHH-HHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVV-TFVGQM 64 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~-~~l~~i 64 (363)
+.-.|.||| -.|||||. ++|.++
T Consensus 217 ~~GliLvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHhh
Confidence 345888998 45899986 344443
No 457
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=23.40 E-value=66 Score=27.48 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=17.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHH
Q 017969 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 44 ~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
..|.|.|. .||||+..+|+..+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 46777774 589999999976653
No 458
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=23.30 E-value=1.2e+02 Score=26.50 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=20.8
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH--HhcCC
Q 017969 43 IKILAVTGTN--GKSTVVTFVGQML--NHLGI 70 (363)
Q Consensus 43 ~~vI~VTGTn--GKTTT~~~l~~iL--~~~g~ 70 (363)
..+++|||-| ||||...+|.... ...|.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~ 56 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGA 56 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCC
Confidence 3799999965 7999999887544 34453
No 459
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=23.24 E-value=95 Score=29.96 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=18.4
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
+.-.|.|+|- .|||||...+...+.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999994 589998877666554
No 460
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=23.06 E-value=87 Score=25.35 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=15.9
Q ss_pred EEEeC--CCChHHHHHHHHHHH
Q 017969 46 LAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL 65 (363)
|.++| ..||||.+..|+.-|
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 45555 569999999998887
No 461
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=22.95 E-value=1e+02 Score=28.06 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=28.6
Q ss_pred eeeHHHHHHhhCCCCCcEEEEeC--CCChHHHHHHHHHHHHhc
Q 017969 28 VMSELDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHL 68 (363)
Q Consensus 28 ~l~~~~~~~~~~~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~ 68 (363)
.++++....+.- +.|-+-++| -.||||....|++.|-..
T Consensus 35 tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 35 TVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred HHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 344555555543 788899999 568999999999988643
No 462
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=22.94 E-value=1.2e+02 Score=28.74 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=18.0
Q ss_pred HHHHhhCCCCCcEEEEeC--CCChHHHHHHHHH
Q 017969 33 DFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQ 63 (363)
Q Consensus 33 ~~~~~~~~~~~~vI~VTG--TnGKTTT~~~l~~ 63 (363)
+++.... +....|.|+| ..||||+...|..
T Consensus 139 ~~L~~~v-~~~~~ilI~G~tGSGKTTll~aL~~ 170 (319)
T PRK13894 139 EAIIAAV-RAHRNILVIGGTGSGKTTLVNAIIN 170 (319)
T ss_pred HHHHHHH-HcCCeEEEECCCCCCHHHHHHHHHH
Confidence 3444433 2446777887 4589887765543
No 463
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=22.93 E-value=80 Score=25.32 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=14.6
Q ss_pred CcEEEEeC--CCChHHHHHHHH
Q 017969 43 IKILAVTG--TNGKSTVVTFVG 62 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~ 62 (363)
...|++.| ..||||....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~ 24 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV 24 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 35788998 468999777653
No 464
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=22.71 E-value=1.6e+02 Score=27.93 Aligned_cols=115 Identities=22% Similarity=0.265 Sum_probs=61.8
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHh-cCCCeEeecc----cchh----hhhhhhh-------cc--c-----------
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNH-LGIEAFVGGN----LGNP----LSEAAFH-------CI--A----------- 91 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~-~g~~~~~~gn----ig~p----~~~~~~~-------~~--~----------- 91 (363)
.|+.-||| -.||||+ |.++|++ .|.+++..=| +|.- +.....+ ++ +
T Consensus 1 ipVtvitGFLGsGKTTl---L~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~ 77 (323)
T COG0523 1 IPVTVITGFLGSGKTTL---LNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALER 77 (323)
T ss_pred CCEEEEeecCCCCHHHH---HHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHH
Confidence 37888999 7899985 7788876 4577764322 2221 1100000 00 0
Q ss_pred CCCCCCCCcEEEEEeCcc--ccc---c-cC-ccccccE---EEEeCCChhhhccCC-CHHHHHHHHHHhcccCCCCcEEE
Q 017969 92 LPSSKPKFQVAVVEVSSY--QME---I-PN-KYFCPTV---SVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGL 160 (363)
Q Consensus 92 ~~~~~~~~d~~VlE~g~~--~l~---~-~~-~~~~p~i---~viTnI~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~~~v 160 (363)
....+...|+.|+|...- ... . .. ..+.+.+ ++||=+...|....- +..+.+.. ++ .-.+.+|
T Consensus 78 L~~~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~--Qi----a~AD~iv 151 (323)
T COG0523 78 LLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAED--QL----AFADVIV 151 (323)
T ss_pred HHhccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHH--HH----HhCcEEE
Confidence 001234589999999842 211 1 11 1133333 688888888875433 23333332 22 2367899
Q ss_pred EeCCCh
Q 017969 161 LPFGNQ 166 (363)
Q Consensus 161 ~n~dd~ 166 (363)
+|.-|.
T Consensus 152 lNK~Dl 157 (323)
T COG0523 152 LNKTDL 157 (323)
T ss_pred EecccC
Confidence 998763
No 465
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=22.39 E-value=75 Score=26.77 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=16.3
Q ss_pred EEEEeC--CCChHHHHHHHHHHH
Q 017969 45 ILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL 65 (363)
+|.|+| -.||||.+..|++-+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 366777 569999999988766
No 466
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.02 E-value=75 Score=29.46 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|.| ||||+..+|.-++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGLLQ 58 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 56799999976 79998888876664
No 467
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=22.02 E-value=1.1e+02 Score=25.50 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=20.5
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHHHhc
Q 017969 44 KILAVTGTN--GKSTVVTFVGQMLNHL 68 (363)
Q Consensus 44 ~vI~VTGTn--GKTTT~~~l~~iL~~~ 68 (363)
.+..|||-| |||+....+..++-.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~ 48 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGA 48 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 599999977 8999988877777655
No 468
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=21.92 E-value=88 Score=27.31 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=23.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHhcC--CCe
Q 017969 44 KILAVTGTNGKSTVVTFVGQMLNHLG--IEA 72 (363)
Q Consensus 44 ~vI~VTGTnGKTTT~~~l~~iL~~~g--~~~ 72 (363)
-.|.|=+.+||+.|+..+...++++| .++
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V 53 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKV 53 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeE
Confidence 47888888999999999999999864 444
No 469
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=21.89 E-value=92 Score=29.22 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=17.6
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHH
Q 017969 41 RSIKILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 41 ~~~~vI~VTGT--nGKTTT~~~l~~iL 65 (363)
+....|.|+|. .||||+...|...+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 35678999995 47888877655544
No 470
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.88 E-value=70 Score=29.55 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=21.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+++|.|-| ||||...+|..++..
T Consensus 32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13641 32 EGSFVALVGHTGSGKSTLMQHFNALLKP 59 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 67799999976 799998888877753
No 471
>PRK02496 adk adenylate kinase; Provisional
Probab=21.85 E-value=1e+02 Score=26.03 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=17.6
Q ss_pred EEEEeCC--CChHHHHHHHHHHHH
Q 017969 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 45 vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
.|.|+|. .||||.+..|+.-+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 4778884 699999999988773
No 472
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=21.80 E-value=1.1e+02 Score=28.13 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=28.1
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
.-+|.+.| +.||+.+..-|..-|...|+++...
T Consensus 56 ~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~ 90 (264)
T TIGR03709 56 SLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSF 90 (264)
T ss_pred cEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeC
Confidence 45788888 9999999999999999999888544
No 473
>PRK07078 hypothetical protein; Validated
Probab=21.79 E-value=58 Score=34.81 Aligned_cols=20 Identities=40% Similarity=0.615 Sum_probs=18.1
Q ss_pred eCCCChHHHHHHHHHHHHhc
Q 017969 49 TGTNGKSTVVTFVGQMLNHL 68 (363)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~ 68 (363)
+|.|||||...+|..+|-..
T Consensus 499 ~G~NGKSt~l~~l~~llG~y 518 (759)
T PRK07078 499 TGANGKSVFVNTLATILGDY 518 (759)
T ss_pred CCCCCchHHHHHHHHHhhhh
Confidence 78999999999999999764
No 474
>PRK05973 replicative DNA helicase; Provisional
Probab=21.78 E-value=2.6e+02 Score=25.25 Aligned_cols=34 Identities=9% Similarity=0.041 Sum_probs=22.9
Q ss_pred CCcEEEEeC--CCChHHHHHHH-HHHHHhcCCCeEeec
Q 017969 42 SIKILAVTG--TNGKSTVVTFV-GQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l-~~iL~~~g~~~~~~g 76 (363)
+..++.|+| ..|||+.+..+ .+..+ .|.++..++
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEE
Confidence 456888888 56899988754 44554 577765443
No 475
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=21.77 E-value=1.1e+02 Score=32.11 Aligned_cols=19 Identities=42% Similarity=0.583 Sum_probs=14.7
Q ss_pred CCCcEEEEeC--CCChHHHHH
Q 017969 41 RSIKILAVTG--TNGKSTVVT 59 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~ 59 (363)
+..-.|+|+| |+||+|++.
T Consensus 107 r~~mKV~ifGrts~GKSt~iN 127 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVIN 127 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHH
Confidence 4455799999 999977754
No 476
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=21.69 E-value=77 Score=27.04 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|+|-| ||||...+|..++.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999976 69998888887665
No 477
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=21.67 E-value=92 Score=26.69 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=20.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhcC--CCe
Q 017969 45 ILAVTGTNGKSTVVTFVGQMLNHLG--IEA 72 (363)
Q Consensus 45 vI~VTGTnGKTTT~~~l~~iL~~~g--~~~ 72 (363)
.|.|-+-+||+.|+..+...++++| .++
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v 36 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKV 36 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeE
Confidence 4555555999999999999998754 454
No 478
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=21.67 E-value=77 Score=28.89 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 64 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGMIE 64 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 56799999975 79998888877664
No 479
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=21.66 E-value=1e+02 Score=26.02 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=18.5
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHH
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
...|.+.| ..||||+..+|+..|.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34577777 5799999999998763
No 480
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=21.62 E-value=85 Score=28.30 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=18.0
Q ss_pred CChHHHHHHHHHHHHhcCCCeE
Q 017969 52 NGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 52 nGKTTT~~~l~~iL~~~g~~~~ 73 (363)
.||||-+.-+.+.+...|.++.
T Consensus 7 SGKTT~~~~~~~~~~~~~~~~~ 28 (238)
T PF03029_consen 7 SGKTTFCKGLSEWLESNGRDVY 28 (238)
T ss_dssp SSHHHHHHHHHHHHTTT-S-EE
T ss_pred CCHHHHHHHHHHHHHhccCCce
Confidence 5999999999999999887764
No 481
>PRK14527 adenylate kinase; Provisional
Probab=21.51 E-value=1.2e+02 Score=26.01 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=19.9
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
+.++|.|.|. .||||.+..|+.-+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5678999995 699999988876553
No 482
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=21.48 E-value=71 Score=26.89 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=15.0
Q ss_pred eCCCChHHHHHHHHHHH
Q 017969 49 TGTNGKSTVVTFVGQML 65 (363)
Q Consensus 49 TGTnGKTTT~~~l~~iL 65 (363)
.|-.||||++.-|+..|
T Consensus 8 kgG~GKSt~a~nLA~~l 24 (179)
T cd03110 8 KGGTGKTTVTAALAALL 24 (179)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 35679999999999999
No 483
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=21.48 E-value=84 Score=27.46 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=21.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
...+..|+|-| ||||....|..+|..
T Consensus 23 ~~~~~~i~G~NGsGKS~ileAi~~~l~~ 50 (220)
T PF02463_consen 23 SPGLNVIVGPNGSGKSNILEAIEFVLGG 50 (220)
T ss_dssp TSSEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 44589999977 699999999998864
No 484
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=21.44 E-value=79 Score=28.51 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (255)
T PRK11231 27 TGKITALIGPNGCGKSTLLKCFARLLT 53 (255)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 56799999975 79998888877664
No 485
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=21.43 E-value=96 Score=25.53 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=26.8
Q ss_pred CCcEEEEeC-CCChHHHHHHHHHHHHhcCCCeE
Q 017969 42 SIKILAVTG-TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 42 ~~~vI~VTG-TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
+.++|+|-| |.=++.++..+..-|+++|+++.
T Consensus 15 ~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~Vi 47 (140)
T COG1832 15 SAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVI 47 (140)
T ss_pred hCceEEEEecCCCCCccHHHHHHHHHHCCCEEE
Confidence 678999999 55567788899999999999873
No 486
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=21.40 E-value=84 Score=27.73 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=17.8
Q ss_pred EEEeC--CCChHHHHHHHHHHHHh
Q 017969 46 LAVTG--TNGKSTVVTFVGQMLNH 67 (363)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL~~ 67 (363)
|+|-| ..||||.+..|+.-|..
T Consensus 2 I~iEG~~GsGKSTl~~~L~~~l~~ 25 (219)
T cd02030 2 ITVDGNIASGKGKLAKELAEKLGM 25 (219)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 66666 57999999999988854
No 487
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=21.34 E-value=72 Score=28.91 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 56799999976 79999988887765
No 488
>PF14516 AAA_35: AAA-like domain
Probab=21.31 E-value=2e+02 Score=27.21 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=27.9
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeE
Q 017969 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 41 ~~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~ 73 (363)
++...+.|.|.. ||||+..-+.+-|++.|+.+.
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v 63 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCV 63 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEE
Confidence 457799999974 999999999988988888774
No 489
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=21.24 E-value=82 Score=27.60 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=21.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhc
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~ 68 (363)
....++|-|-| ||+|.+.||+-+..-.
T Consensus 38 ~~QTlaiIG~NGSGKSTLakMlaGmi~PT 66 (267)
T COG4167 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPT 66 (267)
T ss_pred CCcEEEEEccCCCcHhHHHHHHhcccCCC
Confidence 55688898865 6999999998877643
No 490
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=21.09 E-value=3e+02 Score=24.27 Aligned_cols=70 Identities=14% Similarity=0.098 Sum_probs=46.4
Q ss_pred eeEEEEee-cCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchhhhhhhcccCcEEEEEccc
Q 017969 258 RMQIVHRD-IQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITVCAL 333 (363)
Q Consensus 258 R~e~~~~~-~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~~~~~vi~~G~~ 333 (363)
|++.+..+ .+.+.+|-|. -.|.++++++++.+. +...++.+|+.-+.|..+ .+..+.+.....+.+.|..
T Consensus 5 ~~~~~~~~~~~ri~visDi-Hg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~-----~~~l~~l~~~~~~~v~GNH 78 (218)
T PRK09968 5 RYQKINAHHYRHIWVVGDI-HGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPES-----LNVLRLLNQPWFISVKGNH 78 (218)
T ss_pred ceeeccCCCCCeEEEEEec-cCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCH-----HHHHHHHhhCCcEEEECch
Confidence 45555311 1346788997 669999999998874 234677899999888765 2455555443456677766
No 491
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=21.01 E-value=65 Score=26.73 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=14.9
Q ss_pred CChHHHHHHHHHHHHhc
Q 017969 52 NGKSTVVTFVGQMLNHL 68 (363)
Q Consensus 52 nGKTTT~~~l~~iL~~~ 68 (363)
.||||+..+|+..|.-.
T Consensus 3 sGKStvg~~lA~~L~~~ 19 (158)
T PF01202_consen 3 SGKSTVGKLLAKRLGRP 19 (158)
T ss_dssp SSHHHHHHHHHHHHTSE
T ss_pred CcHHHHHHHHHHHhCCC
Confidence 69999999999999743
No 492
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=20.89 E-value=89 Score=27.89 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=19.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL 65 (363)
+..+++|.|.| ||||...+|..++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 56799999975 7999888887764
No 493
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=20.76 E-value=1.9e+02 Score=26.66 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=45.2
Q ss_pred HHHHcCCCHHHHHHHhhcCCCC----CCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc--CCcEEEEEcCC
Q 017969 234 LGLDIGVDVEALNSTIEILRTP----PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQ 302 (363)
Q Consensus 234 ~~~~lgi~~~~i~~~l~~~~~~----~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~IlG~~ 302 (363)
-....|-++.++++-|..|+.. ..||=+++ .+|. ++.| ....+++...+..+. +-+.|+|.|+.
T Consensus 8 ~~~~~~~~~~e~~~~l~~f~~~~~~~~~~f~VIK--~GG~-~~~~--~~~~~~l~~dla~L~~lGl~~VlVHGgg 77 (271)
T cd04236 8 FLHQKGGDPREARYWLTQFQIAMPNDWPAFAVLE--VDHS-VFRS--LEMVQSLSFGLAFLQRMDMKLLVVMGLS 77 (271)
T ss_pred HHHHhCCCHHHHHHHHHHhhccCCCCCCCEEEEE--EChh-hhcC--chhHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3566789999999999999986 47999996 4553 3432 335666666555553 45788999874
No 494
>PRK06835 DNA replication protein DnaC; Validated
Probab=20.73 E-value=1e+02 Score=29.33 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=23.3
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
+.+.+.| -.|||..+..++.-|...|.++..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y 216 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIY 216 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 4555655 359999999999888888877643
No 495
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=20.70 E-value=69 Score=30.94 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=22.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+++|.|.| ||||+..+|..++..
T Consensus 18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~p 45 (363)
T TIGR01186 18 KGEIFVIMGLSGSGKSTTVRMLNRLIEP 45 (363)
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCC
Confidence 56799999975 899999999988864
No 496
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=20.69 E-value=69 Score=30.73 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=18.1
Q ss_pred CCChHHHHHHHHHHHHhcCC
Q 017969 51 TNGKSTVVTFVGQMLNHLGI 70 (363)
Q Consensus 51 TnGKTTT~~~l~~iL~~~g~ 70 (363)
-+||||.++.|..+|.+.|.
T Consensus 64 DHGKTTLTaAITkila~~g~ 83 (449)
T KOG0460|consen 64 DHGKTTLTAAITKILAEKGG 83 (449)
T ss_pred cCCchhHHHHHHHHHHhccc
Confidence 48999999999999998874
No 497
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.49 E-value=5e+02 Score=25.57 Aligned_cols=122 Identities=18% Similarity=0.171 Sum_probs=57.8
Q ss_pred cHHHHHH-HhcCCceeeHHHHH---HhhCCCCCcEEEEeCC-CChHHHHH--HHHHHHHhcCCCeEeecccchhhhhhhh
Q 017969 15 ATGLACL-LQSGKRVMSELDFA---AQVIPRSIKILAVTGT-NGKSTVVT--FVGQMLNHLGIEAFVGGNLGNPLSEAAF 87 (363)
Q Consensus 15 ~p~l~~a-~~~~~~~l~~~~~~---~~~~~~~~~vI~VTGT-nGKTTT~~--~l~~iL~~~g~~~~~~gnig~p~~~~~~ 87 (363)
+|+|.+| .+.|++-.+.++.- .-. ....+|+.+=| .|||-+=. ++.++|.+.-.-. +-+=.|--+...
T Consensus 69 ~~~L~~ac~~l~~~~PT~IQ~~aiP~~L--~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~---~lVLtPtRELA~ 143 (476)
T KOG0330|consen 69 HPELLEACQELGWKKPTKIQSEAIPVAL--GGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFF---ALVLTPTRELAQ 143 (476)
T ss_pred CHHHHHHHHHhCcCCCchhhhhhcchhh--CCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCce---EEEecCcHHHHH
Confidence 4555544 55565555554421 111 24456766553 58886543 4667776433211 222222211111
Q ss_pred h---cccCCCCCCCCcEEEEEeCcccccccCcc-ccccEEEEeCCCh--hhhccCC--CHHHH
Q 017969 88 H---CIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTP--DHLERHK--TMKNY 142 (363)
Q Consensus 88 ~---~~~~~~~~~~~d~~VlE~g~~~l~~~~~~-~~p~i~viTnI~~--dHl~~~g--t~e~~ 142 (363)
+ .+...+..-+...++++-|..-....+.. -+|++.|=| -|. ||++.-+ +++.+
T Consensus 144 QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaT-PGrL~dhl~~Tkgf~le~l 205 (476)
T KOG0330|consen 144 QIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVAT-PGRLWDHLENTKGFSLEQL 205 (476)
T ss_pred HHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeC-cHHHHHHHHhccCccHHHh
Confidence 0 00011123345678888886422222222 379995544 554 9998443 55543
No 498
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=20.35 E-value=1.2e+02 Score=28.23 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=24.4
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhc
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHL 68 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~ 68 (363)
...+||+.| -.||||...++..-|+..
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 566999999 689999999999999987
No 499
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=20.33 E-value=1e+02 Score=28.02 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.0
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+.-.|||-|.| ||||...+|+.++.-
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaGi~~P 79 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAGIYKP 79 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCccCC
Confidence 56789999987 599999999988874
No 500
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=20.20 E-value=1.4e+02 Score=27.15 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=20.9
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcC
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLG 69 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g 69 (363)
..-+.+.| -.||||++..++..|...|
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 34466677 4699999999999997655
Done!