Query 017969
Match_columns 363
No_of_seqs 253 out of 2015
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 07:49:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lk7_A UDP-N-acetylmuramoylala 100.0 8.7E-61 3E-65 472.3 33.9 315 3-342 74-389 (451)
2 2x5o_A UDP-N-acetylmuramoylala 100.0 9.3E-57 3.2E-61 442.2 33.7 307 4-340 67-378 (439)
3 3hn7_A UDP-N-acetylmuramate-L- 100.0 1.5E-54 5E-59 434.7 35.3 319 4-333 83-452 (524)
4 1gg4_A UDP-N-acetylmuramoylala 100.0 1.6E-54 5.3E-59 427.8 25.3 320 5-343 65-402 (452)
5 4hv4_A UDP-N-acetylmuramate--L 100.0 8.1E-54 2.8E-58 426.6 30.4 306 4-330 84-410 (494)
6 2am1_A SP protein, UDP-N-acety 100.0 1.1E-54 3.7E-59 429.4 22.4 313 5-341 66-396 (454)
7 1p3d_A UDP-N-acetylmuramate--a 100.0 9.4E-52 3.2E-56 410.5 30.3 305 4-330 80-401 (475)
8 2f00_A UDP-N-acetylmuramate--L 100.0 3.2E-51 1.1E-55 408.1 32.0 305 4-330 81-407 (491)
9 1j6u_A UDP-N-acetylmuramate-al 100.0 1.2E-49 4E-54 394.4 29.5 295 4-331 74-386 (469)
10 1e8c_A UDP-N-acetylmuramoylala 100.0 2.8E-48 9.6E-53 387.5 24.2 278 42-333 107-414 (498)
11 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 7.2E-48 2.5E-52 387.3 25.6 280 42-334 145-450 (535)
12 3eag_A UDP-N-acetylmuramate:L- 100.0 8.1E-47 2.8E-51 357.5 26.4 246 3-256 68-325 (326)
13 2vos_A Folylpolyglutamate synt 100.0 2.1E-45 7.1E-50 365.1 26.5 288 27-333 45-407 (487)
14 1jbw_A Folylpolyglutamate synt 100.0 3E-45 1E-49 359.3 25.4 270 41-332 37-367 (428)
15 3nrs_A Dihydrofolate:folylpoly 100.0 2.9E-45 9.8E-50 359.9 22.6 293 28-343 34-394 (437)
16 1o5z_A Folylpolyglutamate synt 100.0 9.8E-45 3.3E-49 356.6 26.3 271 41-333 50-377 (442)
17 1w78_A FOLC bifunctional prote 100.0 1.7E-43 5.9E-48 346.2 23.8 266 41-333 47-358 (422)
18 3mvn_A UDP-N-acetylmuramate:L- 99.3 2.5E-12 8.7E-17 108.7 7.6 87 242-333 11-102 (163)
19 1pjq_A CYSG, siroheme synthase 95.8 0.0021 7.2E-08 62.7 1.2 64 4-68 75-146 (457)
20 3fwy_A Light-independent proto 93.5 0.076 2.6E-06 48.9 5.2 35 42-76 47-83 (314)
21 2g0t_A Conserved hypothetical 93.1 0.27 9.3E-06 45.8 8.2 104 42-145 168-306 (350)
22 3fgn_A Dethiobiotin synthetase 92.6 0.13 4.5E-06 45.7 5.1 40 36-75 19-61 (251)
23 1xjc_A MOBB protein homolog; s 92.0 0.2 6.8E-06 41.7 5.2 36 42-77 3-40 (169)
24 4dzz_A Plasmid partitioning pr 91.9 0.17 5.9E-06 42.7 4.9 32 44-75 2-36 (206)
25 3of5_A Dethiobiotin synthetase 91.2 0.23 8E-06 43.3 5.1 34 42-75 3-39 (228)
26 1byi_A Dethiobiotin synthase; 91.1 0.19 6.6E-06 43.1 4.4 31 44-74 2-35 (224)
27 3ea0_A ATPase, para family; al 90.0 0.3 1E-05 42.4 4.8 34 42-75 3-40 (245)
28 3cio_A ETK, tyrosine-protein k 90.0 0.84 2.9E-05 41.4 7.9 34 41-74 102-138 (299)
29 3la6_A Tyrosine-protein kinase 89.6 0.55 1.9E-05 42.4 6.2 33 41-73 90-125 (286)
30 2ph1_A Nucleotide-binding prot 89.4 0.64 2.2E-05 41.1 6.5 44 31-75 7-53 (262)
31 3qxc_A Dethiobiotin synthetase 89.3 0.4 1.4E-05 42.3 4.9 34 42-75 20-56 (242)
32 1g3q_A MIND ATPase, cell divis 89.1 0.42 1.5E-05 41.2 5.0 32 44-75 3-37 (237)
33 3bfv_A CAPA1, CAPB2, membrane 89.0 0.7 2.4E-05 41.3 6.5 34 41-74 80-116 (271)
34 1wcv_1 SOJ, segregation protei 88.9 0.37 1.3E-05 42.5 4.5 34 42-75 5-41 (257)
35 1zu4_A FTSY; GTPase, signal re 88.3 0.53 1.8E-05 43.3 5.3 35 42-76 104-140 (320)
36 2xj4_A MIPZ; replication, cell 88.0 0.53 1.8E-05 42.3 5.0 31 44-74 5-38 (286)
37 1vma_A Cell division protein F 87.6 0.63 2.2E-05 42.5 5.3 35 42-76 103-139 (306)
38 1rz3_A Hypothetical protein rb 87.5 0.89 3E-05 38.4 5.9 34 41-74 20-55 (201)
39 1kyq_A Met8P, siroheme biosynt 87.1 0.11 3.7E-06 46.9 -0.2 63 4-67 109-183 (274)
40 1hyq_A MIND, cell division inh 86.7 0.64 2.2E-05 40.8 4.7 32 44-75 3-37 (263)
41 3cwq_A Para family chromosome 86.6 0.71 2.4E-05 39.4 4.8 29 45-74 2-33 (209)
42 3k9g_A PF-32 protein; ssgcid, 86.5 0.63 2.2E-05 41.1 4.5 34 41-75 25-61 (267)
43 3q9l_A Septum site-determining 86.2 0.8 2.8E-05 40.0 5.0 31 44-74 3-36 (260)
44 1a7j_A Phosphoribulokinase; tr 85.8 0.62 2.1E-05 42.2 4.1 30 42-71 4-35 (290)
45 2oze_A ORF delta'; para, walke 85.8 0.39 1.3E-05 43.3 2.8 26 49-74 45-70 (298)
46 3c8u_A Fructokinase; YP_612366 84.9 1.3 4.4E-05 37.5 5.5 33 41-73 20-54 (208)
47 3end_A Light-independent proto 84.1 1.2 3.9E-05 40.3 5.2 34 41-74 39-74 (307)
48 2obn_A Hypothetical protein; s 83.5 1.1 3.8E-05 41.6 4.8 35 42-76 151-188 (349)
49 3ug7_A Arsenical pump-driving 83.5 1.3 4.6E-05 41.0 5.4 36 42-77 24-62 (349)
50 2z0h_A DTMP kinase, thymidylat 83.0 1.1 3.8E-05 37.1 4.3 29 45-73 2-32 (197)
51 3kl4_A SRP54, signal recogniti 82.6 1.3 4.4E-05 42.5 5.0 34 43-76 97-132 (433)
52 1np6_A Molybdopterin-guanine d 82.2 1.9 6.6E-05 35.7 5.4 35 42-76 5-41 (174)
53 1nn5_A Similar to deoxythymidy 82.0 1.4 4.7E-05 37.2 4.5 31 42-72 8-40 (215)
54 3b9q_A Chloroplast SRP recepto 81.8 1.7 5.9E-05 39.4 5.3 35 42-76 99-135 (302)
55 2woo_A ATPase GET3; tail-ancho 81.3 1.4 5E-05 40.4 4.7 34 43-76 18-54 (329)
56 3ez2_A Plasmid partition prote 81.1 2 6.8E-05 40.5 5.7 34 41-74 106-148 (398)
57 3ez9_A Para; DNA binding, wing 81.0 1 3.4E-05 42.6 3.6 34 41-74 109-151 (403)
58 3fkq_A NTRC-like two-domain pr 80.5 1.7 5.7E-05 40.7 4.9 36 41-76 141-179 (373)
59 2f1r_A Molybdopterin-guanine d 79.9 1.5 5.3E-05 36.2 4.0 32 44-75 3-36 (171)
60 2pbr_A DTMP kinase, thymidylat 79.9 1.8 6.2E-05 35.6 4.5 29 45-73 2-32 (195)
61 2afh_E Nitrogenase iron protei 79.6 1.9 6.4E-05 38.5 4.8 31 44-74 3-35 (289)
62 3zq6_A Putative arsenical pump 79.5 1.9 6.6E-05 39.4 4.9 34 44-77 14-50 (324)
63 2pez_A Bifunctional 3'-phospho 79.3 2 7E-05 35.1 4.6 31 42-72 4-36 (179)
64 2og2_A Putative signal recogni 78.7 2.4 8.2E-05 39.6 5.3 35 42-76 156-192 (359)
65 2wwf_A Thymidilate kinase, put 78.7 1.8 6.2E-05 36.3 4.2 31 42-72 9-41 (212)
66 3pg5_A Uncharacterized protein 78.4 1.2 4E-05 41.6 3.1 32 44-75 2-36 (361)
67 3dm5_A SRP54, signal recogniti 76.6 2.6 9E-05 40.5 5.0 34 43-76 100-135 (443)
68 2px0_A Flagellar biosynthesis 76.5 2.9 9.9E-05 37.8 5.0 35 42-76 104-141 (296)
69 1cp2_A CP2, nitrogenase iron p 76.3 1.9 6.6E-05 37.8 3.7 31 44-74 2-34 (269)
70 2yhs_A FTSY, cell division pro 76.0 3.1 0.00011 40.6 5.3 34 42-75 292-327 (503)
71 1odf_A YGR205W, hypothetical 3 75.9 2.3 7.8E-05 38.4 4.2 29 41-69 29-59 (290)
72 3uie_A Adenylyl-sulfate kinase 75.4 4.2 0.00014 34.0 5.5 31 41-71 23-55 (200)
73 2vo1_A CTP synthase 1; pyrimid 75.3 3.5 0.00012 36.7 4.9 34 41-74 21-58 (295)
74 2woj_A ATPase GET3; tail-ancho 75.0 2.7 9.2E-05 39.1 4.5 34 43-76 17-55 (354)
75 1ls1_A Signal recognition part 74.1 3.7 0.00013 37.0 5.1 34 43-76 98-133 (295)
76 1uj2_A Uridine-cytidine kinase 74.1 1.9 6.6E-05 37.7 3.1 26 42-67 21-48 (252)
77 3aez_A Pantothenate kinase; tr 73.9 2.6 9E-05 38.4 4.1 28 41-68 88-117 (312)
78 1nks_A Adenylate kinase; therm 73.7 3.6 0.00012 33.7 4.6 30 44-73 2-33 (194)
79 3tr0_A Guanylate kinase, GMP k 73.4 2.3 7.9E-05 35.4 3.3 24 42-65 6-31 (205)
80 2i3b_A HCR-ntpase, human cance 73.4 2.6 8.9E-05 35.4 3.6 26 44-69 2-29 (189)
81 2yvu_A Probable adenylyl-sulfa 73.4 4.7 0.00016 33.1 5.3 31 42-72 12-44 (186)
82 2xxa_A Signal recognition part 73.2 3.8 0.00013 39.2 5.2 33 42-74 99-134 (433)
83 3iqw_A Tail-anchored protein t 72.7 3.2 0.00011 38.3 4.4 28 50-77 25-52 (334)
84 3e70_C DPA, signal recognition 71.4 4.8 0.00016 37.0 5.2 35 42-76 128-164 (328)
85 2jeo_A Uridine-cytidine kinase 71.4 3 0.0001 36.2 3.8 35 27-65 13-49 (245)
86 2grj_A Dephospho-COA kinase; T 71.3 2.9 9.8E-05 35.2 3.4 28 42-72 11-40 (192)
87 2c5m_A CTP synthase; cytidine 71.2 4.4 0.00015 35.8 4.5 34 41-74 21-58 (294)
88 3kjh_A CO dehydrogenase/acetyl 70.8 1.7 6E-05 37.4 2.0 26 49-74 8-33 (254)
89 2p67_A LAO/AO transport system 70.6 4.5 0.00015 37.2 4.9 36 41-76 54-91 (341)
90 3asz_A Uridine kinase; cytidin 70.2 2.9 0.0001 35.1 3.3 25 42-66 5-31 (211)
91 1m7g_A Adenylylsulfate kinase; 70.0 6.4 0.00022 33.1 5.5 31 42-72 24-57 (211)
92 3a4m_A L-seryl-tRNA(SEC) kinas 69.9 4.5 0.00015 35.5 4.6 32 42-73 3-36 (260)
93 1rj9_A FTSY, signal recognitio 69.7 5.7 0.0002 36.0 5.3 35 42-76 101-137 (304)
94 3p32_A Probable GTPase RV1496/ 69.0 5.5 0.00019 36.8 5.1 35 41-75 77-113 (355)
95 2qm8_A GTPase/ATPase; G protei 68.6 6 0.00021 36.3 5.3 36 41-76 53-90 (337)
96 3tqc_A Pantothenate kinase; bi 68.3 5.7 0.00019 36.4 5.0 25 43-67 92-118 (321)
97 1zuh_A Shikimate kinase; alpha 68.2 3.9 0.00013 32.9 3.5 25 42-66 6-32 (168)
98 4edh_A DTMP kinase, thymidylat 67.6 6.8 0.00023 33.4 5.1 32 42-73 5-38 (213)
99 1j8m_F SRP54, signal recogniti 67.1 5.9 0.0002 35.8 4.8 34 43-76 98-133 (297)
100 1ye8_A Protein THEP1, hypothet 66.6 4.4 0.00015 33.5 3.6 22 45-66 2-25 (178)
101 2ffh_A Protein (FFH); SRP54, s 66.5 6.2 0.00021 37.6 5.0 34 43-76 98-133 (425)
102 2plr_A DTMP kinase, probable t 66.5 5 0.00017 33.3 4.0 27 43-69 4-32 (213)
103 3lnc_A Guanylate kinase, GMP k 66.5 3 0.0001 35.7 2.6 25 42-66 26-53 (231)
104 3a00_A Guanylate kinase, GMP k 65.9 2.9 9.8E-05 34.6 2.3 23 44-66 2-26 (186)
105 3ake_A Cytidylate kinase; CMP 65.4 4.5 0.00015 33.6 3.5 23 44-66 3-27 (208)
106 2j37_W Signal recognition part 65.1 6.6 0.00022 38.4 5.0 34 42-75 100-135 (504)
107 2j41_A Guanylate kinase; GMP, 65.0 3.5 0.00012 34.3 2.7 24 42-65 5-30 (207)
108 1kht_A Adenylate kinase; phosp 65.0 6.6 0.00022 32.0 4.4 28 43-70 3-32 (192)
109 3kb2_A SPBC2 prophage-derived 64.3 5 0.00017 32.1 3.5 23 44-66 2-26 (173)
110 1cke_A CK, MSSA, protein (cyti 63.8 5.7 0.0002 33.6 3.9 23 43-65 5-29 (227)
111 2eyu_A Twitching motility prot 63.8 7.1 0.00024 34.4 4.6 27 42-68 24-52 (261)
112 1uf9_A TT1252 protein; P-loop, 63.1 4.7 0.00016 33.3 3.1 29 41-73 6-36 (203)
113 3hjn_A DTMP kinase, thymidylat 62.8 7.4 0.00025 32.6 4.3 30 45-74 2-33 (197)
114 1sq5_A Pantothenate kinase; P- 62.2 5.2 0.00018 36.2 3.4 25 42-66 79-105 (308)
115 1xx6_A Thymidine kinase; NESG, 61.1 12 0.0004 31.3 5.3 34 42-75 7-42 (191)
116 3ld9_A DTMP kinase, thymidylat 61.1 7 0.00024 33.7 3.9 34 41-74 19-55 (223)
117 2c95_A Adenylate kinase 1; tra 60.8 6.2 0.00021 32.4 3.5 24 42-65 8-33 (196)
118 2www_A Methylmalonic aciduria 59.8 11 0.00039 34.6 5.4 35 42-76 73-109 (349)
119 3tau_A Guanylate kinase, GMP k 59.6 7.1 0.00024 32.8 3.7 26 41-66 6-33 (208)
120 2if2_A Dephospho-COA kinase; a 59.6 4.8 0.00016 33.5 2.6 25 44-72 2-28 (204)
121 4tmk_A Protein (thymidylate ki 59.6 11 0.00039 32.0 5.0 28 43-70 3-32 (213)
122 3pzx_A Formate--tetrahydrofola 59.2 11 0.00036 36.7 5.0 34 41-74 55-94 (557)
123 1jjv_A Dephospho-COA kinase; P 59.0 5.9 0.0002 33.0 3.0 25 44-72 3-29 (206)
124 2iyv_A Shikimate kinase, SK; t 58.9 5.6 0.00019 32.4 2.8 23 44-66 3-27 (184)
125 1kag_A SKI, shikimate kinase I 58.7 5.3 0.00018 32.1 2.6 24 43-66 4-29 (173)
126 3nva_A CTP synthase; rossman f 58.7 11 0.00039 36.8 5.2 32 43-74 3-38 (535)
127 1yrb_A ATP(GTP)binding protein 58.3 11 0.00039 32.4 4.9 33 42-75 13-47 (262)
128 4i1u_A Dephospho-COA kinase; s 58.2 7.7 0.00026 33.1 3.6 27 42-72 8-36 (210)
129 3lv8_A DTMP kinase, thymidylat 58.2 12 0.00041 32.4 5.0 30 42-71 26-57 (236)
130 2w0m_A SSO2452; RECA, SSPF, un 58.1 12 0.00041 31.4 4.9 35 42-76 22-58 (235)
131 2qt1_A Nicotinamide riboside k 58.0 6 0.00021 33.0 2.9 24 42-65 20-45 (207)
132 2v3c_C SRP54, signal recogniti 57.9 6.6 0.00023 37.5 3.5 33 43-75 99-133 (432)
133 1gtv_A TMK, thymidylate kinase 57.9 3.5 0.00012 34.5 1.4 28 45-72 2-31 (214)
134 4eaq_A DTMP kinase, thymidylat 56.9 8.5 0.00029 33.1 3.8 31 42-73 25-57 (229)
135 2f6r_A COA synthase, bifunctio 56.8 6.5 0.00022 35.0 3.1 22 42-63 74-97 (281)
136 4eun_A Thermoresistant glucoki 56.4 9.3 0.00032 31.7 3.8 24 42-65 28-53 (200)
137 1knq_A Gluconate kinase; ALFA/ 56.2 9.4 0.00032 30.7 3.8 24 42-65 7-32 (175)
138 1e6c_A Shikimate kinase; phosp 56.1 7.4 0.00025 31.2 3.1 23 44-66 3-27 (173)
139 1znw_A Guanylate kinase, GMP k 55.9 7.3 0.00025 32.7 3.1 26 41-66 18-45 (207)
140 1vht_A Dephospho-COA kinase; s 55.2 8.7 0.0003 32.3 3.5 22 42-63 3-26 (218)
141 1tev_A UMP-CMP kinase; ploop, 55.0 9.1 0.00031 31.2 3.5 23 43-65 3-27 (196)
142 2jaq_A Deoxyguanosine kinase; 55.0 9.1 0.00031 31.5 3.5 22 45-66 2-25 (205)
143 2v54_A DTMP kinase, thymidylat 54.9 9.3 0.00032 31.5 3.6 24 42-65 3-28 (204)
144 1lvg_A Guanylate kinase, GMP k 54.8 7.5 0.00026 32.5 3.0 25 42-66 3-29 (198)
145 3t61_A Gluconokinase; PSI-biol 54.7 8.6 0.0003 31.9 3.4 24 42-65 17-42 (202)
146 1qf9_A UMP/CMP kinase, protein 54.5 8.2 0.00028 31.4 3.1 23 43-65 6-30 (194)
147 1ukz_A Uridylate kinase; trans 54.0 8.5 0.00029 31.9 3.2 25 41-65 13-39 (203)
148 3vaa_A Shikimate kinase, SK; s 54.0 11 0.00037 31.3 3.8 24 42-65 24-49 (199)
149 3v9p_A DTMP kinase, thymidylat 53.9 12 0.0004 32.3 4.1 32 42-73 24-61 (227)
150 3io3_A DEHA2D07832P; chaperone 53.9 11 0.00038 34.8 4.2 35 43-77 18-56 (348)
151 1y63_A LMAJ004144AAA protein; 53.8 9.7 0.00033 31.2 3.5 23 42-64 9-33 (184)
152 2bwj_A Adenylate kinase 5; pho 53.4 8.9 0.0003 31.5 3.2 24 43-66 12-37 (199)
153 3jvv_A Twitching mobility prot 52.9 14 0.00047 34.3 4.7 27 42-68 122-150 (356)
154 3lw7_A Adenylate kinase relate 52.6 11 0.00038 29.8 3.6 26 44-73 2-29 (179)
155 2pt5_A Shikimate kinase, SK; a 52.5 11 0.00037 30.0 3.5 22 45-66 2-25 (168)
156 1q3t_A Cytidylate kinase; nucl 51.2 13 0.00044 31.8 4.0 24 42-65 15-40 (236)
157 3cm0_A Adenylate kinase; ATP-b 50.7 10 0.00036 30.7 3.2 23 43-65 4-28 (186)
158 1kgd_A CASK, peripheral plasma 50.3 11 0.00037 30.8 3.2 25 42-66 4-30 (180)
159 2b8t_A Thymidine kinase; deoxy 50.2 21 0.00073 30.6 5.2 33 42-74 11-45 (223)
160 4ehx_A Tetraacyldisaccharide 4 50.1 10 0.00036 34.5 3.3 28 42-69 35-66 (315)
161 2ewv_A Twitching motility prot 49.9 15 0.00052 34.1 4.5 28 41-68 134-163 (372)
162 2vli_A Antibiotic resistance p 49.9 7.6 0.00026 31.4 2.2 25 42-66 4-30 (183)
163 1ihu_A Arsenical pump-driving 49.8 20 0.0007 35.4 5.7 33 42-74 7-41 (589)
164 4e22_A Cytidylate kinase; P-lo 48.9 12 0.00039 32.6 3.3 24 42-65 26-51 (252)
165 3trf_A Shikimate kinase, SK; a 48.7 14 0.00047 29.9 3.6 23 43-65 5-29 (185)
166 1cr0_A DNA primase/helicase; R 48.6 21 0.0007 31.6 5.1 33 41-73 33-68 (296)
167 2rhm_A Putative kinase; P-loop 46.8 14 0.00048 30.0 3.4 24 42-65 4-29 (193)
168 2orw_A Thymidine kinase; TMTK, 46.5 22 0.00076 29.2 4.6 31 43-73 3-35 (184)
169 4a0g_A Adenosylmethionine-8-am 46.3 16 0.00055 38.0 4.4 34 42-75 33-74 (831)
170 3ec2_A DNA replication protein 46.1 40 0.0014 27.1 6.1 31 42-72 37-70 (180)
171 1qhx_A CPT, protein (chloramph 45.9 13 0.00043 29.9 2.9 23 44-66 4-28 (178)
172 3igf_A ALL4481 protein; two-do 45.8 7.6 0.00026 36.4 1.7 28 50-77 11-38 (374)
173 1htw_A HI0065; nucleotide-bind 45.5 15 0.0005 29.6 3.2 25 41-65 31-57 (158)
174 2cdn_A Adenylate kinase; phosp 45.3 19 0.00065 29.7 4.0 24 42-65 19-44 (201)
175 3do6_A Formate--tetrahydrofola 45.3 24 0.00084 34.0 5.0 33 41-73 41-79 (543)
176 1dek_A Deoxynucleoside monopho 45.1 14 0.00047 32.2 3.2 21 44-64 2-24 (241)
177 1aky_A Adenylate kinase; ATP:A 45.1 17 0.00059 30.5 3.8 25 42-66 3-29 (220)
178 2r8r_A Sensor protein; KDPD, P 44.1 20 0.00067 31.0 3.9 28 46-73 11-38 (228)
179 3hdt_A Putative kinase; struct 44.1 17 0.00057 31.2 3.5 25 42-66 13-39 (223)
180 1via_A Shikimate kinase; struc 43.7 15 0.0005 29.6 3.0 23 44-66 5-29 (175)
181 3iij_A Coilin-interacting nucl 43.5 17 0.00058 29.3 3.4 24 42-65 10-35 (180)
182 1m8p_A Sulfate adenylyltransfe 42.6 20 0.0007 35.4 4.3 31 42-72 395-428 (573)
183 1x6v_B Bifunctional 3'-phospho 42.3 24 0.00081 35.4 4.7 32 42-73 51-84 (630)
184 2j9r_A Thymidine kinase; TK1, 41.4 38 0.0013 28.9 5.3 34 41-74 26-61 (214)
185 2gks_A Bifunctional SAT/APS ki 40.7 23 0.00079 34.8 4.4 31 42-72 371-403 (546)
186 3kta_A Chromosome segregation 40.5 15 0.00052 29.7 2.6 24 44-67 27-52 (182)
187 1zp6_A Hypothetical protein AT 40.5 17 0.00058 29.5 2.9 23 42-64 8-32 (191)
188 1p9r_A General secretion pathw 40.4 33 0.0011 32.5 5.2 27 42-68 166-194 (418)
189 1wb9_A DNA mismatch repair pro 40.2 10 0.00036 39.2 1.8 47 13-65 583-631 (800)
190 3fb4_A Adenylate kinase; psych 39.4 21 0.00072 29.7 3.4 21 45-65 2-24 (216)
191 3nwj_A ATSK2; P loop, shikimat 39.3 19 0.00066 31.4 3.2 24 43-66 48-73 (250)
192 1s1m_A CTP synthase; CTP synth 37.8 35 0.0012 33.5 5.0 31 44-74 4-38 (545)
193 1ly1_A Polynucleotide kinase; 37.6 22 0.00076 28.3 3.2 20 44-63 3-24 (181)
194 3out_A Glutamate racemase; str 37.5 76 0.0026 27.9 6.9 46 25-72 94-139 (268)
195 3ch4_B Pmkase, phosphomevalona 37.4 20 0.00069 30.3 2.9 39 42-83 10-50 (202)
196 1vco_A CTP synthetase; tetrame 37.2 36 0.0012 33.5 5.0 31 44-74 13-47 (550)
197 1s96_A Guanylate kinase, GMP k 36.9 23 0.00077 30.2 3.2 25 42-66 15-41 (219)
198 2bbw_A Adenylate kinase 4, AK4 36.8 27 0.00093 29.9 3.8 24 42-65 26-51 (246)
199 1ko7_A HPR kinase/phosphatase; 36.6 48 0.0016 30.1 5.4 58 4-61 83-164 (314)
200 3tlx_A Adenylate kinase 2; str 36.4 28 0.00094 29.9 3.8 24 42-65 28-53 (243)
201 2ocp_A DGK, deoxyguanosine kin 36.4 18 0.00061 30.9 2.5 24 43-66 2-27 (241)
202 2h92_A Cytidylate kinase; ross 35.8 19 0.00065 30.1 2.5 22 44-65 4-27 (219)
203 4hlc_A DTMP kinase, thymidylat 35.7 45 0.0015 27.9 4.9 29 44-73 3-33 (205)
204 2kjq_A DNAA-related protein; s 34.8 52 0.0018 25.8 4.9 31 42-72 35-67 (149)
205 2olj_A Amino acid ABC transpor 34.7 23 0.00077 31.2 2.9 25 42-66 49-75 (263)
206 2wsm_A Hydrogenase expression/ 34.4 39 0.0013 28.0 4.3 33 42-75 29-63 (221)
207 3r20_A Cytidylate kinase; stru 34.3 31 0.001 29.8 3.6 25 42-66 8-34 (233)
208 2ehv_A Hypothetical protein PH 34.3 49 0.0017 27.8 5.1 22 42-63 29-52 (251)
209 2k0m_A Uncharacterized protein 34.0 7.4 0.00025 29.3 -0.3 12 352-363 88-99 (104)
210 3lfu_A DNA helicase II; SF1 he 34.0 23 0.00078 35.2 3.2 27 43-70 25-52 (647)
211 3dl0_A Adenylate kinase; phosp 32.7 28 0.00094 29.0 3.1 25 45-72 2-28 (216)
212 3czq_A Putative polyphosphate 32.4 17 0.00057 32.9 1.6 33 42-74 85-119 (304)
213 1b0u_A Histidine permease; ABC 32.3 26 0.00089 30.7 2.9 25 42-66 31-57 (262)
214 2zu0_C Probable ATP-dependent 32.2 31 0.0011 30.3 3.4 24 42-65 45-70 (267)
215 3b85_A Phosphate starvation-in 31.9 34 0.0012 28.8 3.5 25 42-67 21-47 (208)
216 2pcj_A ABC transporter, lipopr 31.6 24 0.0008 30.1 2.4 25 42-66 29-55 (224)
217 1zd8_A GTP:AMP phosphotransfer 31.6 25 0.00084 29.7 2.6 24 42-65 6-31 (227)
218 2yz2_A Putative ABC transporte 31.5 27 0.00092 30.7 2.9 25 42-66 32-58 (266)
219 1mv5_A LMRA, multidrug resista 31.2 18 0.00061 31.3 1.6 25 42-66 27-53 (243)
220 2yv5_A YJEQ protein; hydrolase 30.9 46 0.0016 29.7 4.4 32 32-66 156-189 (302)
221 2bdt_A BH3686; alpha-beta prot 30.7 31 0.0011 27.9 3.0 20 44-63 3-24 (189)
222 1vpl_A ABC transporter, ATP-bi 30.7 29 0.00099 30.3 2.9 25 42-66 40-66 (256)
223 2qor_A Guanylate kinase; phosp 30.6 26 0.00088 29.0 2.5 25 42-66 11-37 (204)
224 2d2e_A SUFC protein; ABC-ATPas 30.4 33 0.0011 29.7 3.2 23 42-64 28-52 (250)
225 3fdi_A Uncharacterized protein 30.1 29 0.001 28.9 2.8 23 43-65 6-30 (201)
226 1ak2_A Adenylate kinase isoenz 29.6 45 0.0015 28.2 3.9 25 42-66 15-41 (233)
227 4g1u_C Hemin import ATP-bindin 29.4 19 0.00064 31.8 1.4 26 42-67 36-63 (266)
228 3be4_A Adenylate kinase; malar 29.3 34 0.0012 28.6 3.1 23 43-65 5-29 (217)
229 1g8f_A Sulfate adenylyltransfe 29.2 35 0.0012 33.2 3.5 26 42-67 394-421 (511)
230 1ji0_A ABC transporter; ATP bi 29.1 30 0.001 29.8 2.7 25 42-66 31-57 (240)
231 2onk_A Molybdate/tungstate ABC 29.0 37 0.0013 29.3 3.3 25 41-66 23-49 (240)
232 2nq2_C Hypothetical ABC transp 28.9 31 0.001 30.1 2.7 25 42-66 30-56 (253)
233 1g6h_A High-affinity branched- 28.5 31 0.0011 30.1 2.7 25 42-66 32-58 (257)
234 1nij_A Hypothetical protein YJ 28.5 30 0.001 31.1 2.7 30 42-73 3-34 (318)
235 2ixe_A Antigen peptide transpo 28.5 37 0.0013 29.9 3.2 25 42-66 44-70 (271)
236 3d3q_A TRNA delta(2)-isopenten 28.3 32 0.0011 31.6 2.8 23 44-66 8-32 (340)
237 1tue_A Replication protein E1; 28.1 58 0.002 27.7 4.2 51 16-66 29-83 (212)
238 2xb4_A Adenylate kinase; ATP-b 28.0 42 0.0015 28.2 3.5 21 45-65 2-24 (223)
239 1zak_A Adenylate kinase; ATP:A 27.9 35 0.0012 28.5 2.9 23 44-66 6-30 (222)
240 2cbz_A Multidrug resistance-as 27.7 39 0.0013 29.0 3.2 24 42-65 30-55 (237)
241 2p5t_B PEZT; postsegregational 27.6 32 0.0011 29.7 2.7 25 42-66 31-57 (253)
242 2ghi_A Transport protein; mult 27.2 40 0.0014 29.4 3.2 25 42-66 45-71 (260)
243 2ihy_A ABC transporter, ATP-bi 27.1 34 0.0012 30.3 2.8 25 42-66 46-72 (279)
244 2w58_A DNAI, primosome compone 26.7 68 0.0023 26.0 4.5 30 44-73 55-86 (202)
245 3e1s_A Exodeoxyribonuclease V, 26.7 97 0.0033 30.5 6.2 35 42-76 203-239 (574)
246 2pjz_A Hypothetical protein ST 26.4 36 0.0012 29.9 2.8 23 43-65 30-54 (263)
247 1sgw_A Putative ABC transporte 26.3 35 0.0012 28.9 2.5 25 42-66 34-60 (214)
248 3euj_A Chromosome partition pr 26.3 43 0.0015 32.4 3.4 25 44-68 30-56 (483)
249 1z6g_A Guanylate kinase; struc 26.0 35 0.0012 28.7 2.5 24 42-65 22-47 (218)
250 1lw7_A Transcriptional regulat 25.9 38 0.0013 31.1 2.9 24 43-66 170-195 (365)
251 3thx_B DNA mismatch repair pro 25.9 29 0.00099 36.5 2.3 48 13-64 646-696 (918)
252 2qi9_C Vitamin B12 import ATP- 25.8 38 0.0013 29.4 2.8 25 42-66 25-51 (249)
253 4ag6_A VIRB4 ATPase, type IV s 25.5 43 0.0015 30.9 3.3 30 45-74 37-68 (392)
254 2ze6_A Isopentenyl transferase 25.5 50 0.0017 28.5 3.5 22 44-65 2-25 (253)
255 1e4v_A Adenylate kinase; trans 25.4 44 0.0015 27.7 3.0 26 45-73 2-29 (214)
256 2npi_A Protein CLP1; CLP1-PCF1 25.3 31 0.0011 33.0 2.3 28 41-68 136-165 (460)
257 2gza_A Type IV secretion syste 24.9 27 0.00092 32.2 1.7 26 42-67 174-201 (361)
258 2pze_A Cystic fibrosis transme 24.7 46 0.0016 28.3 3.1 25 42-66 33-59 (229)
259 2bbs_A Cystic fibrosis transme 24.0 43 0.0015 29.8 2.8 25 42-66 63-89 (290)
260 2ff7_A Alpha-hemolysin translo 23.8 48 0.0016 28.6 3.1 25 42-66 34-60 (247)
261 3qks_A DNA double-strand break 23.7 62 0.0021 26.8 3.7 26 42-67 22-49 (203)
262 3bos_A Putative DNA replicatio 23.4 1.1E+02 0.0037 25.2 5.2 31 42-72 51-83 (242)
263 3ney_A 55 kDa erythrocyte memb 23.3 61 0.0021 27.1 3.5 24 42-65 18-43 (197)
264 2vp4_A Deoxynucleoside kinase; 23.2 34 0.0011 29.0 1.9 24 41-64 18-43 (230)
265 1knx_A Probable HPR(Ser) kinas 23.1 82 0.0028 28.4 4.5 27 4-30 86-112 (312)
266 1ihu_A Arsenical pump-driving 23.0 58 0.002 32.0 3.8 32 44-75 327-361 (589)
267 2v9p_A Replication protein E1; 22.9 72 0.0025 28.6 4.1 25 41-65 124-150 (305)
268 2it1_A 362AA long hypothetical 22.8 56 0.0019 30.2 3.4 25 42-66 28-54 (362)
269 2oap_1 GSPE-2, type II secreti 22.6 34 0.0011 33.3 1.9 26 42-67 259-286 (511)
270 3tmk_A Thymidylate kinase; pho 22.5 65 0.0022 27.3 3.5 26 42-67 4-31 (216)
271 2yyz_A Sugar ABC transporter, 22.4 57 0.0019 30.1 3.4 25 42-66 28-54 (359)
272 1p5z_B DCK, deoxycytidine kina 22.4 19 0.00065 31.3 0.1 26 41-66 22-49 (263)
273 3e2i_A Thymidine kinase; Zn-bi 22.4 1.1E+02 0.0037 26.1 4.9 32 42-73 27-60 (219)
274 1f2t_A RAD50 ABC-ATPase; DNA d 21.8 76 0.0026 24.8 3.7 25 43-67 23-49 (149)
275 3s81_A Putative aspartate race 21.8 70 0.0024 28.1 3.7 48 25-73 122-169 (268)
276 2hf9_A Probable hydrogenase ni 21.5 91 0.0031 25.7 4.3 25 42-66 37-63 (226)
277 1oxx_K GLCV, glucose, ABC tran 21.0 51 0.0017 30.3 2.7 25 42-66 30-56 (353)
278 1jwy_B Dynamin A GTPase domain 20.4 53 0.0018 29.0 2.7 20 42-61 23-44 (315)
279 3d31_A Sulfate/molybdate ABC t 20.3 55 0.0019 30.1 2.8 25 42-66 25-51 (348)
280 1v43_A Sugar-binding transport 20.2 68 0.0023 29.7 3.4 25 42-66 36-62 (372)
No 1
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=8.7e-61 Score=472.31 Aligned_cols=315 Identities=23% Similarity=0.356 Sum_probs=267.8
Q ss_pred eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhh
Q 017969 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (363)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~ 82 (363)
=++|+||+++++||++++|+++|+|+++++|++++.. +.++|+||||||||||++||+++|++.|.++.+.||+|.|+
T Consensus 74 d~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~--~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~~~ 151 (451)
T 3lk7_A 74 CYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVS--ESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFPA 151 (451)
T ss_dssp EEEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHC--CSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSCH
T ss_pred CEEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeecChhh
Confidence 3689999999999999999999999999999999987 45999999999999999999999999999999999999998
Q ss_pred hhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEe
Q 017969 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n 162 (363)
+.... ...+.|++|+|+|+++++.++. ++|+++|||||++||+|+|||+|+|+++|++|++.+++++.+|+|
T Consensus 152 ~~~~~-------~~~~~d~~VlE~~s~~l~~~~~-~~p~iaviTNI~~DHld~~gt~e~i~~aK~~i~~~~~~~~~~V~n 223 (451)
T 3lk7_A 152 SEVVQ-------AANDKDTLVMELSSFQLMGVKE-FRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLN 223 (451)
T ss_dssp HHHTT-------TCCTTCEEEEECCHHHHTTCSS-CCCSEEEECCCCSCCHHHHSSHHHHHHHHHGGGTTCCTTSEEEEE
T ss_pred hhhhh-------cCCCCCEEEEECCccccccccc-cCCCEEEEcCCChhHhhhcCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 76542 1346799999999999887665 899999999999999999999999999999999999889999999
Q ss_pred CCChhHHHHHhcCCccEEEeccCCCc-eeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCC
Q 017969 163 FGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241 (363)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~ 241 (363)
.|||....+......++++||.+.+. ..... ...+.+ .+. ..+....++++|.||++|+++|+ +++..+|++
T Consensus 224 ~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~--~~~-~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~ 296 (451)
T 3lk7_A 224 FNQGISKELAKTTKATIVPFSTTEKVDGAYVQ--DKQLFY--KGE-NIMSVDDIGVPGSHNVENALATI--AVAKLAGIS 296 (451)
T ss_dssp TTSHHHHHHHTTCSSEEEEEESSSCCSSEEEE--TTEEEE--TTE-EEEEGGGSSSCSHHHHHHHHHHH--HHHHHHTCC
T ss_pred CCcHHHHHHHhhcCCeEEEEccCCCcCCEEEE--CCEEEE--CCc-EEeeccccCCCcHHHHHHHHHHH--HHHHHcCCC
Confidence 99999988887677788899875322 00000 112222 221 22234689999999999999999 899999999
Q ss_pred HHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccCCcEEEEEcCCCCCCCCCCccchhhhhhhc
Q 017969 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321 (363)
Q Consensus 242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l 321 (363)
+++|+++|++|+++|||||++. ..+++++|||+|||||+|+.++++.++++|+++|+|++.+. .+++++.+.+
T Consensus 297 ~~~i~~~L~~f~~~~gR~e~v~-~~~g~~vi~D~~a~np~a~~~al~~~~~~rii~I~g~~~r~------~d~~~l~~~l 369 (451)
T 3lk7_A 297 NQVIRETLSNFGGVKHRLQSLG-KVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDRG------NEFDELIPDI 369 (451)
T ss_dssp HHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHHTSCGGGEEEEECCSCCS------CCCGGGHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEe-eeCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEEEECCCCCC------CCHHHHHHHH
Confidence 9999999999999999999996 46889999999999999999999999755689999877653 2467788887
Q ss_pred ccCcEEEEEcccchHHHHhhC
Q 017969 322 NHHRCVITVCALLFLKIVIQF 342 (363)
Q Consensus 322 ~~~~~vi~~G~~~~~~~~~~~ 342 (363)
+++|.+|++|+.+ ..+.+.+
T Consensus 370 ~~~d~vi~~G~~~-~~l~~~~ 389 (451)
T 3lk7_A 370 TGLKHMVVLGESA-SRVKRAA 389 (451)
T ss_dssp TTCSEEEECSTTH-HHHHHHH
T ss_pred HhcCEEEEECCCH-HHHHHHH
Confidence 7799999999886 5666655
No 2
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=9.3e-57 Score=442.22 Aligned_cols=307 Identities=26% Similarity=0.384 Sum_probs=256.4
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~ 83 (363)
++|.+|++++++|++..|++++++++++++++++.. +.++|+||||||||||++||+++|++.|++++++||+|.|++
T Consensus 67 ~vV~s~gi~~~~p~~~~a~~~~~~v~~~~~~~~~~~--~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gnig~~~~ 144 (439)
T 2x5o_A 67 LIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPAL 144 (439)
T ss_dssp EEEECTTSCTTCHHHHHHHHTTCEEECHHHHHHHHC--CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESSSBCHH
T ss_pred EEEeCCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEecccCHHHH
Confidence 689999999999999999999999999999999986 589999999999999999999999999999999999999997
Q ss_pred hhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEEEe
Q 017969 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLP 162 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v~n 162 (363)
... ..+.|++|+|+|+++++.++. ++|+++|||||++||+|+| +|+|+|+++|++|++. ++.+|+|
T Consensus 145 ~~~---------~~~~d~~VlE~~~~~l~~~~~-~~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~---~~~~V~n 211 (439)
T 2x5o_A 145 MLL---------DDECELYVLELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVN 211 (439)
T ss_dssp HHC---------CTTCCEEEEECCHHHHHTCCC-CCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTT---CSEEEEE
T ss_pred HHh---------CCCCCEEEEECCchhhccccc-CCCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcC---CCEEEEe
Confidence 653 124589999999999998766 8999999999999999999 7999999999999984 6899999
Q ss_pred CCChhHHHHHhcCCccEEEeccCCC-ce-eccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCC
Q 017969 163 FGNQHLNEAIKGHRFNLAWIGAFPG-VK-IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (363)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi 240 (363)
.|||....+... ..++++||.+.. +. +... ...+.+. .+. ..+....++++|.||++|+++|+ +++..+|+
T Consensus 212 ~dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~--~~~~~~~-~~~-~~~~~~~l~l~G~hn~~NalaA~--a~~~~lgi 284 (439)
T 2x5o_A 212 ADDALTMPIRGA-DERCVSFGVNMGDYHLNHQQ--GETWLRV-KGE-KVLNVKEMKLSGQHNYTNALAAL--ALADAAGL 284 (439)
T ss_dssp TTCGGGSCSCCC-SSCCEEECSSSSSEEEEEET--TEEEEEE-TTE-EEEEGGGCSCCSHHHHHHHHHHH--HHHHHTTC
T ss_pred CCCHHHHHHhhc-CCcEEEEeCCCcCcCcEEEE--CCEEEEe-CCc-EEEeehhcCCCCHHHHHHHHHHH--HHHHHcCC
Confidence 999987665443 457788886421 11 1111 1122221 121 11223578999999999999999 89999999
Q ss_pred CHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhcccC-CcEEEEEcCCCCCCCCCCccchhhhhh
Q 017969 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLIE 319 (363)
Q Consensus 241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~-~~~i~IlG~~~~~g~~~~~~~~~~l~~ 319 (363)
++++|+++|++|+++|||||++. ..+++++|||+|||||+|++++++.++. +|+++|+|+|++.++ ++++.+
T Consensus 285 ~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~vi~Ds~a~np~a~~~al~~l~~~~~~i~v~g~~~k~~~------~~~~~~ 357 (439)
T 2x5o_A 285 PRASSLKALTTFTGLPHRFEVVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSAD------FSPLAR 357 (439)
T ss_dssp CHHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHTTCCCSSCEEEEEESBCTTCC------CGGGGG
T ss_pred CHHHHHHHHHhCCCCCCceEEEE-EECCEEEEEeCCCCCHHHHHHHHHhCCcCCCEEEEEcCCCCCCC------HHHHHH
Confidence 99999999999999999999996 4678999999999999999999999973 689999999877654 456888
Q ss_pred hccc-CcEEEEEcccchHHHHh
Q 017969 320 PLNH-HRCVITVCALLFLKIVI 340 (363)
Q Consensus 320 ~l~~-~~~vi~~G~~~~~~~~~ 340 (363)
.++. +|.+|++|+.. ..+.+
T Consensus 358 ~l~~~~d~vi~~g~~~-~~~~~ 378 (439)
T 2x5o_A 358 YLNGDNVRLYCFGRDG-AQLAA 378 (439)
T ss_dssp GSCSSSEEEEEESTTH-HHHHT
T ss_pred HHHhhCCEEEEECCCH-HHHHH
Confidence 7765 89999999886 45555
No 3
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=1.5e-54 Score=434.69 Aligned_cols=319 Identities=19% Similarity=0.203 Sum_probs=239.2
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeE-ee-------
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-VG------- 75 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~-~~------- 75 (363)
++|+||+++++||++++|+++|+|+++++|++++...+..++|+||||||||||++||++||+++|.++. ..
T Consensus 83 ~vV~Spgi~~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~iGg~~~~~ 162 (524)
T 3hn7_A 83 LVVVGNAMKRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVN 162 (524)
T ss_dssp EEEECTTCCTTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBCCC
T ss_pred EEEECCCcCCCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCEeccc
Confidence 6899999999999999999999999999999988532456899999999999999999999999998764 22
Q ss_pred -------cccchhhhhhhhhcccCCCCCCCCcEEEEEeCccccccc---Cc--cccccEEEEeCCChhhhccCCCHHHHH
Q 017969 76 -------GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP---NK--YFCPTVSVVLNLTPDHLERHKTMKNYA 143 (363)
Q Consensus 76 -------gnig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~---~~--~~~p~i~viTnI~~dHl~~~gt~e~~~ 143 (363)
+++|.|....... .....+.++|++|+|+|+++.... .. .++|+++|||||++||+|+|||+|+|+
T Consensus 163 ~T~~nln~~ig~~~~~~~~~--~~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~gs~e~y~ 240 (524)
T 3hn7_A 163 TTDTNLQQVFAHSSYLGTEK--DDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAIQ 240 (524)
T ss_dssp SSCHHHHHHTTSSEECCCCC--CSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC------CHHHHH
T ss_pred cCchhhhhhhhhHHhhCCCc--ccccccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccCCHHHHH
Confidence 2344443210000 000002346899999999875532 11 279999999999999999999999999
Q ss_pred HHHHHhcccCCCCcEEEEeCCChhHHHHHhc-CCccEEEeccC----------------------CCceecc-ccccceE
Q 017969 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAF----------------------PGVKIDT-EAKTASF 199 (363)
Q Consensus 144 ~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~-~~~~~~~ 199 (363)
++|.++++.+++++.+|+|.|||.+..+... ...++++||.. .++.... ...+..|
T Consensus 241 ~aK~~i~~~~~~~g~~VlN~DD~~~~~~~~~~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~~f 320 (524)
T 3hn7_A 241 TQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQF 320 (524)
T ss_dssp HHHHHHHTTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEEEEEC-------------------CCCSEEEEEEETTTTEE
T ss_pred HHHHHHHHhCCCCCEEEEECCCHHHHHHHHhccCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCceEE
Confidence 9999999999889999999999999887643 34577888853 1121100 0112334
Q ss_pred EEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCC
Q 017969 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279 (363)
Q Consensus 200 ~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~n 279 (363)
.+...+....+..+.++++|.||++|+++|+ +++..+|+++++|+++|++|+++|||||++. ..+++++|+|+ +||
T Consensus 321 ~l~~~~~~~~~~~~~l~l~G~hn~~NalaA~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~g~~vi~D~-ahn 396 (524)
T 3hn7_A 321 TVSFNDNKEATALVNWSMSGLHNVNNALVAI--AAAYNIGVSVKTACAALSAFAGIKRRMELIG-DVNDILVFDDF-AHH 396 (524)
T ss_dssp EEEETTEEEEEEEEECSCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHTCCCBTTSSEEEE-EETTEEEEEEC-CCS
T ss_pred EEEECCccceeEEEEeCCCcHHHHHhHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCceEEEEE-ecCCcEEEEEC-CCC
Confidence 4433332211234589999999999999999 8999999999999999999999999999996 46789999997 899
Q ss_pred HHHHHHHHhccc----CCcEEEEEcCC---CCCCCCCCccchhhhhhhcccCcEEEEEccc
Q 017969 280 LEATCTGLMDLK----GHKCVILLGGQ---AKVLNGQESNGFEKLIEPLNHHRCVITVCAL 333 (363)
Q Consensus 280 p~s~~~al~~~~----~~~~i~IlG~~---~~~g~~~~~~~~~~l~~~l~~~~~vi~~G~~ 333 (363)
|++++++++.++ ++|+++|+|++ .++++. ...+...++.+|.+|++|+.
T Consensus 397 p~~~~a~l~~l~~~~~~~r~i~V~g~~~~~~~~g~~-----~~~~~~~~~~aD~vil~~~~ 452 (524)
T 3hn7_A 397 PTAITTTLDGAKKKLADRRLWAIIEPRSNTMKMGIH-----QDSLAQSATLADHTLWYEPT 452 (524)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEEECCCCSSCCSCC-----TTHHHHHTTTSSEEEEECCT
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEECCCCcchhhhhh-----HHHHHHHHhcCCEEEEcCCC
Confidence 999999988773 46899999986 344442 33455556679999999975
No 4
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=1.6e-54 Score=427.79 Aligned_cols=320 Identities=19% Similarity=0.245 Sum_probs=239.2
Q ss_pred eeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc----cch
Q 017969 5 WLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGN 80 (363)
Q Consensus 5 ~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn----ig~ 80 (363)
+|.++.++++.|.+. +++..+++++++..++.. .+.++|+||||||||||++||+++|++.|.+..+.|| +|.
T Consensus 65 vv~~~~~~~~~p~i~--v~~~~~~l~~la~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~t~g~~n~~ig~ 141 (452)
T 1gg4_A 65 LLVSRPLDIDLPQLI--VKDTRLAFGELAAWVRQQ-VPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGV 141 (452)
T ss_dssp EEESSCCSCSSCEEE--ESCHHHHHHHHHHHHHHH-SCCEEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCSTTHH
T ss_pred EEECCCcCCCCCEEE--ECCHHHHHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeeccccccCCcch
Confidence 456666554555443 344455666777666543 2678999999999999999999999999976677777 677
Q ss_pred hhhhhhhhcccCCCCCCCCcEEEEEeCcc-ccc--ccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCc
Q 017969 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSY-QME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157 (363)
Q Consensus 81 p~~~~~~~~~~~~~~~~~~d~~VlE~g~~-~l~--~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~ 157 (363)
|.+... ...++|++|+|+|++ .++ .....++|+++|||||++||+|+|||+|+|+++|++|++.+++++
T Consensus 142 p~t~~~--------~~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNI~~DHld~~gt~e~~~~aK~~i~~~~~~~~ 213 (452)
T 1gg4_A 142 PMTLLR--------LTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENG 213 (452)
T ss_dssp HHHHTT--------CCTTCSEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGCCTTC
T ss_pred hHHHHc--------CCCCCcEEEEEeCCCCcchHHHHhCccCCCEEEECCCChHHhhhcCCHHHHHHHHHHHHhhcccCC
Confidence 765432 245789999999964 444 233347999999999999999999999999999999999988889
Q ss_pred EEEEeCCChhHHHHHh-cCCccEEEeccCC---Cceec---cccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHH
Q 017969 158 LGLLPFGNQHLNEAIK-GHRFNLAWIGAFP---GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230 (363)
Q Consensus 158 ~~v~n~dd~~~~~~~~-~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~ 230 (363)
.+|+|.|||....+.+ ....++++||.+. ++... ....+..+.+...+... .+.++++|.||++|+++|+
T Consensus 214 ~~V~n~dd~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~---~~~l~l~G~hn~~NalaA~ 290 (452)
T 1gg4_A 214 IAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSV---DVLLPLPGRHNIANALAAA 290 (452)
T ss_dssp EEEEETTBCCHHHHHHHHTTSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEE---EEEECSSSTHHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHHhhcCCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEECCCEE---EEEeCCCcHHHHHHHHHHH
Confidence 9999999998877632 1145788898642 23221 11112234333222222 2578999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc--CCcEEEEEcCCCCCCCC
Q 017969 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVLNG 308 (363)
Q Consensus 231 ~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~IlG~~~~~g~~ 308 (363)
+++..+|+++++|+++|++|+++|||||++. ..+++++|||+|||||+|++++++.++ ++|+++|+|+|.|+|+.
T Consensus 291 --a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~vidDsyahnp~s~~~~l~~l~~~~~~~i~V~G~~~e~g~~ 367 (452)
T 1gg4_A 291 --ALSMSVGATLDAIKAGLANLKAVPGRLFPIQ-LAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAE 367 (452)
T ss_dssp --HHHHHTTCCHHHHHHHHTTCCCCTTSSEEEE-EETTEEEEECCSCCCHHHHHHHHHHHHHSSSEEEEEECCCCCCTTH
T ss_pred --HHHHHcCCCHHHHHHHHHhCCCCCCCceEEE-CCCCcEEEEeCCCCCHHHHHHHHHHHHhccCCEEEEECCccccCCh
Confidence 8999999999999999999999999999996 456899999999999999999999885 25889999999999987
Q ss_pred CCccchhhhhhhcc--cCcEEEEEcccchHHHHhhCC
Q 017969 309 QESNGFEKLIEPLN--HHRCVITVCALLFLKIVIQFP 343 (363)
Q Consensus 309 ~~~~~~~~l~~~l~--~~~~vi~~G~~~~~~~~~~~~ 343 (363)
+. ..|+++++.++ .+|.+|++|+.. ..+.+.+.
T Consensus 368 ~~-~~~~~~~~~~~~~~~d~vi~~g~~~-~~i~~~~~ 402 (452)
T 1gg4_A 368 SE-ACHVQVGEAAKAAGIDRVLSVGKQS-HAISTASG 402 (452)
T ss_dssp HH-HHHHHHHHHHHHHTCSEEEEESSST-HHHHHHTT
T ss_pred hH-HHHHHHHHHHHHcCCCEEEEECcCH-HHHHHHhh
Confidence 63 46788999775 489999999987 57777653
No 5
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=100.00 E-value=8.1e-54 Score=426.63 Aligned_cols=306 Identities=16% Similarity=0.232 Sum_probs=240.3
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCC-eEeecccchhh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-AFVGGNLGNPL 82 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~-~~~~gnig~p~ 82 (363)
++|+||+++++||++++|+++|+|+++++|++++.+ +..++|+||||||||||++||+++|+.+|.+ +...|+++.++
T Consensus 84 ~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg~~~~~ 162 (494)
T 4hv4_A 84 VVVVSTAISADNPEIVAAREARIPVIRRAEMLAELM-RYRHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLVKAA 162 (494)
T ss_dssp EEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEEEETTT
T ss_pred EEEECCCCCCCCHHHHHHHHCCCCEEcHHHHHHHHh-cCCCEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCccccc
Confidence 689999999999999999999999999999999887 4567999999999999999999999999975 34434333333
Q ss_pred hhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEEE
Q 017969 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLL 161 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (363)
..... ..+.|++|+|+|++.... ..++|+++|||||++||+|+| +|+|+|+++|.+|++.+++++.+|+
T Consensus 163 g~~~~--------~~~~d~~VlE~~e~~~s~--~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~~V~ 232 (494)
T 4hv4_A 163 GTHAR--------LGSSRYLIAEADESDASF--LHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVM 232 (494)
T ss_dssp TEEEE--------CCSSSEEEEECCCGGGGG--GGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCEEEE
T ss_pred ccccc--------cCCCcEEEEEcccccccc--ccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 21111 235789999999654322 248999999999999999999 7999999999999999888999999
Q ss_pred eCCChhHHHHHhcCCccEEEeccCC--Cceec---cccccceEEEecCCe-EEEEEeeccCCCchhHHHHHHHHHHHHHH
Q 017969 162 PFGNQHLNEAIKGHRFNLAWIGAFP--GVKID---TEAKTASFEVPAVGV-VSQLQLHNMKVMGRHNYHNAAVAALSVLG 235 (363)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~l~l~G~h~~~Nal~A~~~a~~ 235 (363)
|.|||....+......++++||... ++... .+.....|.+...+. .. .+.++++|+||++|+++|+ +++
T Consensus 233 n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a 307 (494)
T 4hv4_A 233 CIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLI---EVTLNAPGRHNALNAAAAV--AVA 307 (494)
T ss_dssp ETTSHHHHHHGGGCCSCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCE---EEEESSCSHHHHHHHHHHH--HHH
T ss_pred ECCCHHHHHHHHhcCCCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCceEE---EEEecCCcHHHHHHHHHHH--HHH
Confidence 9999999988876667888998643 22221 111122333332221 11 2478999999999999999 899
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCeeEEEEeec---------CCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCC
Q 017969 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDI---------QGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQ 302 (363)
Q Consensus 236 ~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~---------~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~ 302 (363)
..+|+++++|+++|++|+++|||||++. .. +++++||| |||||++++++++.++ ++|+++|+|++
T Consensus 308 ~~lgi~~~~i~~~L~~f~g~~~R~e~v~-~~~~~~~~~~~~g~~vi~D-yaHnp~~i~a~l~al~~~~~~~rii~V~g~~ 385 (494)
T 4hv4_A 308 TEEGIEDEDILRALVGFQGTGRRFDFLG-NFPLAPVNGKEGSAMLVDD-YGHHPTEVDATIKAARAGWPDKRIVMLFQPH 385 (494)
T ss_dssp HHHTCCHHHHHHHHHHCCCBTTSSEEEE-EEESHHHHSCSSEEEEEEE-CCCSHHHHHHHHHHHHHHCTTSEEEEEECCB
T ss_pred HHcCCCHHHHHHHHHhCCCCCCccEEee-eccccccccCCCCeEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEEcCC
Confidence 9999999999999999999999999996 33 48999999 5999999999888763 45788999864
Q ss_pred CCCCCCCCccchhhhhhhcccCcEEEEE
Q 017969 303 AKVLNGQESNGFEKLIEPLNHHRCVITV 330 (363)
Q Consensus 303 ~~~g~~~~~~~~~~l~~~l~~~~~vi~~ 330 (363)
..... +..+.++++.+..+|.+|++
T Consensus 386 ~~~r~---k~~~~~~~~~~~~aD~vilt 410 (494)
T 4hv4_A 386 RYTRT---RDLYDDFANVLSQVDVLLML 410 (494)
T ss_dssp CHHHH---HHTHHHHHHHHTTSSEEEEE
T ss_pred CCCch---HHHHHHHHHHHhcCCEEEEe
Confidence 32110 11245666667779999986
No 6
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=1.1e-54 Score=429.37 Aligned_cols=313 Identities=18% Similarity=0.170 Sum_probs=242.7
Q ss_pred eeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc----cch
Q 017969 5 WLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGN 80 (363)
Q Consensus 5 ~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn----ig~ 80 (363)
+|.++.++ +.|.+. +++..+++++++..++..+ +.++|+||||||||||++||+++|++.|.++.+.|| +|.
T Consensus 66 vv~~~~~~-~~p~i~--v~~~~~al~~la~~~~~~~-~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~s~g~~n~~ig~ 141 (454)
T 2am1_A 66 TLSEKEVS-NHPYIL--VDDVLTAFQSLASYYLEKT-TVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGL 141 (454)
T ss_dssp EEESSCCC-SSCEEE--CSCHHHHHHHHHHHHHHHH-CCEEEEEECCCSSSCHHHHHHHHHTTTSCEEECCTTCCSTTHH
T ss_pred EEECCCCC-CCCEEE--ECCHHHHHHHHHHHHhhCC-CCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeecCCccCcccch
Confidence 45566554 555443 3444556667776665432 578999999999999999999999999987778888 677
Q ss_pred hhhhhhhhcccCCCCCCCCcEEEEEeCccc-cc--ccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCc
Q 017969 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQ-ME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157 (363)
Q Consensus 81 p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~-l~--~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~ 157 (363)
|.+.... ..++|++|+|+|+++ ++ .....++|+++|||||++||+|+|||+|+|+++|++|++.+++++
T Consensus 142 p~t~~~~--------~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNi~~DHld~~gt~e~~a~aK~~i~~~~~~~~ 213 (454)
T 2am1_A 142 PYTVLHM--------PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGS 213 (454)
T ss_dssp HHHHHTC--------CTTCCEEEEECCCSSTTHHHHHHHHHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTCCTTC
T ss_pred HHHHhcC--------CCCCcEEEEEcCCCCcchHHHHhCccCCCEEEEcCCchHhhhhcCCHHHHHHHHHHHHhhcccCC
Confidence 7654432 457899999999753 33 123347999999999999999999999999999999999988889
Q ss_pred EEEEeCCChhHHHHHhcCCccEEEeccCCCcee---ccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHH
Q 017969 158 LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (363)
Q Consensus 158 ~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~ 234 (363)
.+|+|.|| ....+... ..++++||.+.+.++ .....+..+.+...+. .+.++++|.||++|+++|+ ++
T Consensus 214 ~~V~n~dd-~~~~~~~~-~~~~~~~g~~~~~d~~~i~~~~~~~~~~~~~~~~-----~~~l~l~G~hn~~NalaA~--a~ 284 (454)
T 2am1_A 214 LLLAPADP-IVEDYLPI-DKKVVRFGQGAELEITDLVERKDSLTFKANFLEQ-----ALDLPVTGKYNATNAMIAS--YV 284 (454)
T ss_dssp EEEEESCG-GGGGGCCS-SSEEEEESTTSSBCEEEEEECSSCEEEEETTCSS-----EEEESSCCHHHHHHHHHHH--HH
T ss_pred EEEEEcHH-HHHHHHhc-CCcEEEEeCCCCCceeeeEEeCCceEEEEEecCc-----EEEecCCCHHHHHHHHHHH--HH
Confidence 99999998 76655544 457888986432111 0011112233321111 2478999999999999999 88
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc---C---CcEEEEEcCCCCCCCC
Q 017969 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---G---HKCVILLGGQAKVLNG 308 (363)
Q Consensus 235 ~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~---~~~i~IlG~~~~~g~~ 308 (363)
+..+|+++++|+++|++|+++|||||++. ..+++++|||+|||||+|++++++.++ + +|+++|+|+|.+.|+.
T Consensus 285 ~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~iiDDsyahnp~s~~~~l~~l~~~~~~~~~~~i~V~G~~~e~G~~ 363 (454)
T 2am1_A 285 ALQEGVSEEQIRLAFQHLELTRNRTEWKK-AANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQ 363 (454)
T ss_dssp HHHTTCCHHHHHHHGGGCCCCCCCSCEEC-CTTTCEEEEECSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEECCCCCCTT
T ss_pred HHHcCCCHHHHHHHHHhCCCccCCeeEEE-CCCCeEEEEeCCCCCHHHHHHHHHHHHhcccccCCCEEEEECCchhcCcH
Confidence 99999999999999999999999999996 346788999999999999999999875 2 6899999999999887
Q ss_pred CCccchhhhhhhccc--CcEEEEEcccchHHHHhh
Q 017969 309 QESNGFEKLIEPLNH--HRCVITVCALLFLKIVIQ 341 (363)
Q Consensus 309 ~~~~~~~~l~~~l~~--~~~vi~~G~~~~~~~~~~ 341 (363)
+ ...|+++++.+.. +|.+|++|+.. ..+.+.
T Consensus 364 ~-~~~~~~~~~~~~~~~~d~vi~~g~~~-~~i~~~ 396 (454)
T 2am1_A 364 S-VQLHNQMILSLSPDVLDIVIFYGEDI-AQLAQL 396 (454)
T ss_dssp H-HHHHHHGGGGCCTTTCSEEEEEESTT-HHHHHH
T ss_pred H-HHHHHHHHHHHHhcCCCEEEEECcCH-HHHHHH
Confidence 6 3568889998863 89999999986 555553
No 7
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=9.4e-52 Score=410.45 Aligned_cols=305 Identities=17% Similarity=0.207 Sum_probs=240.7
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCC-e-Eeecccchh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-A-FVGGNLGNP 81 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~-~-~~~gnig~p 81 (363)
++|.+|+++++||++++|+++++|++++.+.+++.. +..++|+||||||||||++||+++|+++|++ + .++||++.+
T Consensus 80 ~vv~s~~i~~~~~~~~~a~~~~i~vl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~~ 158 (475)
T 1p3d_A 80 VVVVSSAIKDDNPELVTSKQKRIPVIQRAQMLAEIM-RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSA 158 (475)
T ss_dssp EEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTT
T ss_pred EEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHh-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCccccc
Confidence 689999999999999999999999999999988876 3568999999999999999999999999986 3 356776532
Q ss_pred hhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEE
Q 017969 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGL 160 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v 160 (363)
-... ...+.|++|+|+|+.+. ....++|+++|||||++||+|+| +|+|+|+++|.+++..+++++.+|
T Consensus 159 ~~~~---------~~~~~d~~VlE~~~~~~--~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~V 227 (475)
T 1p3d_A 159 GKNA---------HLGASRYLIAEADESDA--SFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAV 227 (475)
T ss_dssp TEEE---------ECCSSSEEEEECCCTTS--GGGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred cccc---------ccCCCCEEEEEecCCcC--ccccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 2111 12457899999996543 33347999999999999999999 799999999999999988899999
Q ss_pred EeCCChhHHHHHhcCCccEEEeccCCC--ceec---cccccceEEEecCC-eEEEEEeeccCCCchhHHHHHHHHHHHHH
Q 017969 161 LPFGNQHLNEAIKGHRFNLAWIGAFPG--VKID---TEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (363)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~-~~~~~~~~~l~l~G~h~~~Nal~A~~~a~ 234 (363)
+|.|||....+......++++||...+ +... .+..+..|.+...+ ... .+.++++|+||++|+++|+ ++
T Consensus 228 ~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a~ 302 (475)
T 1p3d_A 228 MCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERI---NVLLNVPGKHNALNATAAL--AV 302 (475)
T ss_dssp EETTCHHHHHHHHHHCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEE---EEEESSCSHHHHHHHHHHH--HH
T ss_pred EECCCHHHHHHHHhcCCCEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCeEE---EEEEcCccHHHHHHHHHHH--HH
Confidence 999999988777655567888986432 2211 11112234432222 111 2478999999999999999 89
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCeeEEEEeec----CCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCCCCCC
Q 017969 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDI----QGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVL 306 (363)
Q Consensus 235 ~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~----~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~~~~g 306 (363)
+..+|+++++|+++|++|+++|||||++. .. +++++|+| |||||++++++++.++ ++|+++|+|++....
T Consensus 303 ~~~lgi~~~~i~~~L~~f~~~~gR~e~v~-~~~~~~~~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~~~~~r 380 (475)
T 1p3d_A 303 AKEEGIANEAILEALADFQGAGRRFDQLG-EFIRPNGKVRLVDD-YGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSR 380 (475)
T ss_dssp HHHTTCCHHHHHHHHHTCCCBTTSSEEEE-EEEETTEEEEEEEE-CCCSHHHHHHHHHHHHHHHCSSCEEEEECCBCHHH
T ss_pred HHHcCCCHHHHHHHHHhCCCCCCCCEEEe-cccccCCCcEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECCCCCcc
Confidence 99999999999999999999999999996 33 37899999 6999999999988764 367889998753211
Q ss_pred CCCCccchhhhhhhcccCcEEEEE
Q 017969 307 NGQESNGFEKLIEPLNHHRCVITV 330 (363)
Q Consensus 307 ~~~~~~~~~~l~~~l~~~~~vi~~ 330 (363)
+ +..+.++++.++.+|.+|++
T Consensus 381 ~---~~~~~~~~~~~~~~d~vi~t 401 (475)
T 1p3d_A 381 T---RDLFDDFVQVLSQVDALIML 401 (475)
T ss_dssp H---HHTHHHHHHHHTTSSEEEEE
T ss_pred H---HHHHHHHHHHHHhCCEEEEc
Confidence 1 12367788877778999985
No 8
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=3.2e-51 Score=408.12 Aligned_cols=305 Identities=16% Similarity=0.219 Sum_probs=240.7
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCC-e-Eeecccchh
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-A-FVGGNLGNP 81 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~-~-~~~gnig~p 81 (363)
++|.+++++++||++++|+++++|++++.+.+++.. +..++|+||||||||||++||+++|+++|++ + .++||++.+
T Consensus 81 ~vv~s~~i~~~~p~~~~a~~~~ipvl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~~ 159 (491)
T 2f00_A 81 VVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELM-RFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAA 159 (491)
T ss_dssp EEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTT
T ss_pred EEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCeeccc
Confidence 589999999999999999999999999999998877 3568999999999999999999999999986 3 356776532
Q ss_pred hhhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEE
Q 017969 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGL 160 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v 160 (363)
-.... ..+.|++|+|+|+.+. ....++|+++|||||++||+|+| +|+|+|+++|.+++..+++++.+|
T Consensus 160 ~~~~~---------~~~~d~~VlE~~~~~~--~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~V 228 (491)
T 2f00_A 160 GVHAR---------LGHGRYLIAEADESDA--SFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAV 228 (491)
T ss_dssp TEEEE---------CCSSSEEEEECCCTTS--GGGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred ccccc---------CCCCCEEEEEeCCCcc--chhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 21111 2457899999996543 33347999999999999999999 799999999999999988899999
Q ss_pred EeCCChhHHHHHhcCCccEEEeccCCC--ceec---cccccceEEEecCC-eEEEEEeeccCCCchhHHHHHHHHHHHHH
Q 017969 161 LPFGNQHLNEAIKGHRFNLAWIGAFPG--VKID---TEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (363)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~-~~~~~~~~~l~l~G~h~~~Nal~A~~~a~ 234 (363)
+|.|||....+......++++||...+ +... .+..+..|.+...+ ... .+.++++|.||++|+++|+ ++
T Consensus 229 ~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a~ 303 (491)
T 2f00_A 229 MCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPM---RVTLNAPGRHNALNAAAAV--AV 303 (491)
T ss_dssp EETTSHHHHHHGGGCCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCE---EEEESSCSHHHHHHHHHHH--HH
T ss_pred EECCCHHHHHHHHhcCCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCceEE---EEEEccchHHHHHHHHHHH--HH
Confidence 999999988887665667889986432 2211 11112234332212 111 2478999999999999999 88
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCeeEEEEeec--------CC-EEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcC
Q 017969 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDI--------QG-VTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG 301 (363)
Q Consensus 235 ~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~--------~~-~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~ 301 (363)
+..+|++++.|+++|++|+++|||||++. .. ++ +++|+| |||||++++++++.++ ++|+++|+|+
T Consensus 304 a~~lgi~~~~i~~~L~~f~~~~gR~e~v~-~~~~~~~~~~~g~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~ 381 (491)
T 2f00_A 304 ATEEGIDDEAILRALESFQGTGRRFDFLG-EFPLEPVNGKSGTAMLVDD-YGHHPTEVDATIKAARAGWPDKNLVMLFQP 381 (491)
T ss_dssp HHHHTCCHHHHHHHHHTCCCBTTSSEEEE-EEESSSSSSCSSEEEEEEE-CCCSHHHHHHHHHHHHTTCCSSEEEEEECC
T ss_pred HHHcCCCHHHHHHHHHhCCCCCCCCEEEc-cccccccccCCCcEEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECC
Confidence 99999999999999999999999999996 32 37 899999 5999999999988764 2578888886
Q ss_pred CCCCCCCCCccchhhhhhhcccCcEEEEE
Q 017969 302 QAKVLNGQESNGFEKLIEPLNHHRCVITV 330 (363)
Q Consensus 302 ~~~~g~~~~~~~~~~l~~~l~~~~~vi~~ 330 (363)
+....+ +..+.++++.++.+|.+|++
T Consensus 382 ~~~~r~---k~~~~~~~~~~~~~d~vilt 407 (491)
T 2f00_A 382 HRFTRT---RDLYDDFANVLTQVDTLLML 407 (491)
T ss_dssp BCHHHH---TTTHHHHHHHHTTSSEEEEC
T ss_pred CCCcch---HHHHHHHHHHHHhCCEEEEc
Confidence 532111 12367888877778999885
No 9
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=1.2e-49 Score=394.42 Aligned_cols=295 Identities=18% Similarity=0.167 Sum_probs=225.6
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCC--CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeE--eecccc
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPR--SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNLG 79 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~--~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~--~~gnig 79 (363)
++|.||+++++||++++|+++|+|+++++|++++.. + +.++|+||||||||||++||+++|+++|++++ +.|+++
T Consensus 74 ~vV~spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~ 152 (469)
T 1j6u_A 74 LVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTL-KREKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMD 152 (469)
T ss_dssp EEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HHHCCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCT
T ss_pred EEEECCCcCCCCHHHHHHHHcCCcEEEHHHHHHHHH-hccCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeec
Confidence 689999999999999999999999999999998876 3 47899999999999999999999999998853 556643
Q ss_pred hhh-hhhhhhcccCCCCCCCCcEEEEEeCcccccccCccccccEEEEeCCChhhhccCCC-HHHHHHHHHHhcccCCCCc
Q 017969 80 NPL-SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTK 157 (363)
Q Consensus 80 ~p~-~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~~~~~~p~i~viTnI~~dHl~~~gt-~e~~~~~K~~i~~~~~~~~ 157 (363)
..- ....+ .+.| +|+|+|+++. +...++|+++|||||++||+|+||| +|+|+++|.++++.++
T Consensus 153 ~~g~~~~~~---------~~~~-~V~E~~~~~~--~~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~--- 217 (469)
T 1j6u_A 153 SLEHGNYEK---------GNGP-VVYELDESEE--FFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTD--- 217 (469)
T ss_dssp TSTTSSEEC---------CSSC-EEEEECTTSG--GGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCS---
T ss_pred ccCcccccc---------CCCC-EEEECCCccC--ccccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCC---
Confidence 311 11111 2356 9999998863 3334799999999999999999997 9999999999988643
Q ss_pred EEEEeCCChhHHHHHhcCCccEEEeccCC-Ccee--cccccc-ceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHH
Q 017969 158 LGLLPFGNQHLNEAIKGHRFNLAWIGAFP-GVKI--DTEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV 233 (363)
Q Consensus 158 ~~v~n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a 233 (363)
.+|+|.|||....+ ++++|+.+. ++.. .....+ ..|.+...+.. +..+.++++|.||++|+++|+ +
T Consensus 218 ~~V~n~dd~~~~~~------~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~--~~~~~l~l~G~hn~~NalaAi--a 287 (469)
T 1j6u_A 218 LVVTFAEDELTSHL------GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKR--YLELKLKVPGFHNVLNALAVI--A 287 (469)
T ss_dssp EEEEETTCTTTGGG------CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEE--EEEEEESSCSHHHHHHHHHHH--H
T ss_pred EEEEECCChhhccc------eEEEEECCCceEEEEEEECCCCCEEEEEEECCeE--EEEEEecCcCHHHHHHHHHHH--H
Confidence 89999999875432 567787532 2221 001111 23333222322 123578999999999999999 8
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCeeEEE--EeecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcC--CCCC
Q 017969 234 LGLDIGVDVEALNSTIEILRTPPHRMQIV--HRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG--QAKV 305 (363)
Q Consensus 234 ~~~~lgi~~~~i~~~l~~~~~~~gR~e~~--~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~--~~~~ 305 (363)
++..+|+++++|+++|++|+++|||||++ . ..+++++||| |||||+++++++++++ ++|+++|+|. ..+.
T Consensus 288 ~a~~lgi~~~~i~~~L~~f~g~~gR~e~v~~~-~~~g~~vi~D-~aHnp~~~~a~l~al~~~~~~~~i~~I~g~g~~~r~ 365 (469)
T 1j6u_A 288 LFDSLGYDLAPVLEALEEFRGVHRRFSIAFHD-PETNIYVIDD-YAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRL 365 (469)
T ss_dssp HHHHTTCCHHHHHHHHHHCCCCTTSSEEEEEE-TTTTEEEEEE-CCCSHHHHHHHHHHHHHHCSSSEEEEEECCBC----
T ss_pred HHHHcCCCHHHHHHHHHhCCCCCCCcEEEccc-ccCCcEEEEe-CCCCHHHHHHHHHHHHHhcCCCcEEEEEcCCCCCcc
Confidence 99999999999999999999999999999 5 3578999999 5999999999888764 3678888873 3322
Q ss_pred CCCCCccchhhhhhhcccCcEEEEEc
Q 017969 306 LNGQESNGFEKLIEPLNHHRCVITVC 331 (363)
Q Consensus 306 g~~~~~~~~~~l~~~l~~~~~vi~~G 331 (363)
. ..+..+++.++.+|.+|+++
T Consensus 366 ~-----~~~~~l~~~~~~~d~vil~~ 386 (469)
T 1j6u_A 366 E-----REDGNFAKALQLADEVVVTE 386 (469)
T ss_dssp ---------CHHHHHHTTSSEEEECC
T ss_pred H-----HHHHHHHHHHhcCCEEEEcc
Confidence 1 12556777777789999974
No 10
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=2.8e-48 Score=387.50 Aligned_cols=278 Identities=21% Similarity=0.145 Sum_probs=211.1
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhhc-ccCC-----------CCCCCCcEEEEEeCcc
Q 017969 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALP-----------SSKPKFQVAVVEVSSY 109 (363)
Q Consensus 42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~~-~~~~-----------~~~~~~d~~VlE~g~~ 109 (363)
+.++|+||||||||||++||+++|++.|+++++.||+|.++....... ++++ ..+.++|++|+|+|++
T Consensus 107 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~~i~~~~~~~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~ 186 (498)
T 1e8c_A 107 NLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSH 186 (498)
T ss_dssp SSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred cCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCcccCCeeeecCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCc
Confidence 568999999999999999999999999999999898776554321110 1111 0145689999999987
Q ss_pred ccc--ccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCChhHHHHHhcCCc---cEEEecc
Q 017969 110 QME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF---NLAWIGA 184 (363)
Q Consensus 110 ~l~--~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~---~~~~~~~ 184 (363)
+++ .+.. ++|+++|||||++||+|+|||+|+|+++|++|++. ++++.+|+|.|||....+...... ++++||.
T Consensus 187 ~l~~~rl~~-~~p~vaViTNI~~DHld~~gt~e~ia~aK~~i~~~-~~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g~ 264 (498)
T 1e8c_A 187 GLVQHRVAA-LKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 264 (498)
T ss_dssp HHHTTTTTT-CBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-SBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCC
T ss_pred hhhcccccc-cCCCEEEEeCCChhhhhccCCHHHHHHHHHHHhcc-CCCCeEEEECCCHHHHHHHHhhhccCCcEEEEec
Confidence 654 3434 68999999999999999999999999999999997 567899999999998887754433 5667775
Q ss_pred CC-----Cceec---cccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCC
Q 017969 185 FP-----GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256 (363)
Q Consensus 185 ~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~ 256 (363)
.. ++... ....+..|.+...+... .+.++++|.||++|+++|+ +++..+|+++++|+++|++|+++|
T Consensus 265 ~~~~~~~d~~~~~~~~~~~g~~f~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~~~~lGi~~~~i~~~L~~~~~~~ 339 (498)
T 1e8c_A 265 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDG---EIESHLMGAFNVSNLLLAL--ATLLALGYPLADLLKTAARLQPVC 339 (498)
T ss_dssp CTTTCSEEEEEEEEEECSSCEEEEEEETTCCE---EEEECSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHGGGCCCCT
T ss_pred CCCCCcCCEEEEEEEEcCCceEEEEEECCceE---EEEecCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCC
Confidence 32 22211 01112233332221111 2478999999999999999 899999999999999999999999
Q ss_pred CeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEcCCCCCCCCCCccchh-hhhhhcc-cCcEEEEEc
Q 017969 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFE-KLIEPLN-HHRCVITVC 331 (363)
Q Consensus 257 gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG~~~~~g~~~~~~~~~-~l~~~l~-~~~~vi~~G 331 (363)
||||++. ..+++++|+| |||||+|++++++.++ ++|+++|+|+..++. ..++ .+++... .+|.++++|
T Consensus 340 gR~e~v~-~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~r~i~V~G~g~dr~-----~~~~~~~~~~~~~~~d~vi~~~ 412 (498)
T 1e8c_A 340 GRMEVFT-APGKPTVVVD-YAHTPDALEKALQAARLHCAGKLWCVFGCGGDRD-----KGKRPLMGAIAEEFADVAVVTD 412 (498)
T ss_dssp TSSEEEC-CTTSCEEEEE-CCCSHHHHHHHHHHHHHTCSSCEEEEECCCSSSC-----STHHHHHHHHHHHHCSEEEECC
T ss_pred CceEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCCEEEEECCCCCcc-----hhHHHHHHHHHHhCCCEEEEcC
Confidence 9999995 3457789999 7999999999999874 368999999755432 1244 3555444 489999998
Q ss_pred cc
Q 017969 332 AL 333 (363)
Q Consensus 332 ~~ 333 (363)
+.
T Consensus 413 ~~ 414 (498)
T 1e8c_A 413 DN 414 (498)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 11
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=7.2e-48 Score=387.27 Aligned_cols=280 Identities=20% Similarity=0.205 Sum_probs=212.6
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecccchhhhhhhhh-cccCC-----------CCCCCCcEEEEEeCcc
Q 017969 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFH-CIALP-----------SSKPKFQVAVVEVSSY 109 (363)
Q Consensus 42 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~~~~~~-~~~~~-----------~~~~~~d~~VlE~g~~ 109 (363)
+.++|+||||||||||++||+++|++.|+++++.||++..+...... .++++ ..+.++|++|+|+|++
T Consensus 145 ~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~~~~i~~~~~~~~~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~ 224 (535)
T 2wtz_A 145 RLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSH 224 (535)
T ss_dssp SSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEECCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred cceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCcceeECCEecccCCccCcHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 56899999999999999999999999999999989876554422110 00111 0135789999999986
Q ss_pred ccc--ccCccccccEEEEeCCChhhhccCCCHHHHHHHHHHhcccCC--CCcEEEEeCCChhHHHHHhcCCccEEEeccC
Q 017969 110 QME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV--NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF 185 (363)
Q Consensus 110 ~l~--~~~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~~~--~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~ 185 (363)
+++ .+.. ++|+++|||||+.||+|+|||+|+|+++|++|++.++ +++.+|+|.|||....+..... ++++||..
T Consensus 225 ~l~~~rl~~-~~p~vaViTNI~~DHld~~gs~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~~-~v~~~g~~ 302 (535)
T 2wtz_A 225 ALALGRVDG-TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA-DAITVSAA 302 (535)
T ss_dssp HHHTTTTTT-CCEEEEEECCCCSCCTTTSSSHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHHS-SCEEEESS
T ss_pred ccccccccc-CCcCEEEEcCCChHHhhhcCCHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhcC-CEEEEecC
Confidence 543 3333 7899999999999999999999999999999999775 5789999999998877765433 67888864
Q ss_pred C---Cceec---cc-cccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCe
Q 017969 186 P---GVKID---TE-AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258 (363)
Q Consensus 186 ~---~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR 258 (363)
. ++... .. ..+..|.+...+... ..+.++++|.||++|+++|+ +++..+|+++++|+++|++|+ +|||
T Consensus 303 ~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~--~~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~~~-~~gR 377 (535)
T 2wtz_A 303 DRPAHWRATDVAPTDAGGQQFTAIDPAGVG--HHIGIRLPGRYNVANCLVAL--AILDTVGVSPEQAVPGLREIR-VPGR 377 (535)
T ss_dssp SSCCSEEEEEEEEETTTEEEEEEECTTSCE--EEEEESCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHTTCC-CTTS
T ss_pred CCcCcEEEEEEEEcCCCCeEEEEEeCCceE--EEEEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCC-CCCc
Confidence 3 22211 11 122334443222110 12478999999999999999 899999999999999999999 8999
Q ss_pred eEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc--CCcEEEEEcCCCCCCCCCCccchhhhhhhcc-cCcEEEEEcccc
Q 017969 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITVCALL 334 (363)
Q Consensus 259 ~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~-~~~~vi~~G~~~ 334 (363)
||++. ..+++++|+| |||||+|++++++.++ ++|+++|+|++.++.. ..+..+++.+. .+|.++++|+..
T Consensus 378 ~e~v~-~~~~~~viiD-yahNP~s~~aal~~l~~~~~r~i~V~G~~gdr~~----~~~~~~~~~a~~~~d~vi~~~~~~ 450 (535)
T 2wtz_A 378 LEQID-RGQGFLALVD-YAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDP----GKRAPMGRIAAQLADLVVVTDDNP 450 (535)
T ss_dssp SEECC-SSCSSEEEEE-CCCSHHHHHHHHHTTCCSSSCEEEEECCCTTSCG----GGHHHHHHHHHHHCSEEEECCSCC
T ss_pred eEEEE-cCCCcEEEEE-CCCCHHHHHHHHHHhhCCCCcEEEEECCCCccch----hhHHHHHHHHHhcCCEEEEcCCCC
Confidence 99996 3457778888 7999999999999986 4578999998765422 12344566554 488999998664
No 12
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=100.00 E-value=8.1e-47 Score=357.52 Aligned_cols=246 Identities=18% Similarity=0.195 Sum_probs=194.6
Q ss_pred eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeE-----eecc
Q 017969 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-----VGGN 77 (363)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~-----~~gn 77 (363)
-++|+||+++++||++++|+++|+|+++++|++++...+..++|+||||||||||++||+++|+++|.++. ..||
T Consensus 68 d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n 147 (326)
T 3eag_A 68 DVYVIGNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPEN 147 (326)
T ss_dssp SEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETT
T ss_pred CEEEECCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceecc
Confidence 36899999999999999999999999999999987532457899999999999999999999999998764 2367
Q ss_pred cchhhhhhhhhcccCCCCCCCCcEEEEEeCccccccc-----CccccccEEEEeCCChhhhccCCCHHHHHHHHHHhccc
Q 017969 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP-----NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH 152 (363)
Q Consensus 78 ig~p~~~~~~~~~~~~~~~~~~d~~VlE~g~~~l~~~-----~~~~~p~i~viTnI~~dHl~~~gt~e~~~~~K~~i~~~ 152 (363)
+|.|.....- ... ....+.|++|+|+|+++.... ...++|+++|||||++||+|+|||+|+|+++|.+|++.
T Consensus 148 ~~~~~~~~~p--~~~-~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~vaviTNI~~DHLd~~gs~e~y~~aK~~i~~~ 224 (326)
T 3eag_A 148 FGVSARLPQT--PRQ-DPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRT 224 (326)
T ss_dssp SSCSEECCCC--CSS-CTTSCCCEEEEECCCSEEETTEEEEGGGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHTT
T ss_pred CCcceecCCc--ccc-ccCCCCCEEEEEccccccchhhcccceeEecCCEEEECCCcHHHHhhcCCHHHHHHHHHHHHHh
Confidence 7766321100 000 124567999999999875432 11379999999999999999999999999999999999
Q ss_pred CCCCcEEEEeCCChhHHHHHhc-CCccEEEeccCCCceecc-ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHH
Q 017969 153 MVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230 (363)
Q Consensus 153 ~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~ 230 (363)
+++++.+|+|.|||....+... ...++++||...++.... ...+. |.+...+.. +..+.++++|+||++|+++|+
T Consensus 225 ~~~~~~~V~n~Dd~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~g~-f~~~~~~~~--~~~~~l~l~G~hNv~NalaAi 301 (326)
T 3eag_A 225 VPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGTEHGWQAGEANADGS-FDVLLDGKT--AGRVKWDLMGRHNRMNALAVI 301 (326)
T ss_dssp SCTTSEEEEESSCHHHHHHHTTCCCSCEEEESSSSSEEEEEECTTSC-EEEEETTEE--EEEECCCCCSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCHHHHHHHhhccCCCEEEECCCCcEEEEEecCCcE-EEEEECCce--EEEEEecCCcHHHHHHHHHHH
Confidence 9889999999999999887653 345788888644443211 11122 444434432 234689999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCCCC
Q 017969 231 LSVLGLDIGVDVEALNSTIEILRTPP 256 (363)
Q Consensus 231 ~~a~~~~lgi~~~~i~~~l~~~~~~~ 256 (363)
+++..+|+++++|+++|++|++++
T Consensus 302 --a~a~~lGi~~~~i~~~L~~f~gv~ 325 (326)
T 3eag_A 302 --AAARHVGVDIQTACEALGAFKNVK 325 (326)
T ss_dssp --HHHHHHTCCHHHHHHHHHTCCCEE
T ss_pred --HHHHHcCCCHHHHHHHHHhCCCCC
Confidence 899999999999999999999854
No 13
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=2.1e-45 Score=365.08 Aligned_cols=288 Identities=17% Similarity=0.188 Sum_probs=213.4
Q ss_pred ceeeHHHHHHhhCC---CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeeccc------------chhhhhhhhh---
Q 017969 27 RVMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFH--- 88 (363)
Q Consensus 27 ~~l~~~~~~~~~~~---~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gni------------g~p~~~~~~~--- 88 (363)
+.+.+++.+.+.+. ++.++|+||||||||||++||+++|+++|++++++++- |.+++...+.
T Consensus 45 ~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~~ 124 (487)
T 2vos_A 45 PSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATY 124 (487)
T ss_dssp TTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEECCCCcCcccceEEECCEECCHHHHHHHH
Confidence 46778887776552 46789999999999999999999999999999665542 2222111000
Q ss_pred -----------------------cccCC----------CCCCCCcEEEEEeCcc-cccccCccccccEEEEeCCChhhhc
Q 017969 89 -----------------------CIALP----------SSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTPDHLE 134 (363)
Q Consensus 89 -----------------------~~~~~----------~~~~~~d~~VlE~g~~-~l~~~~~~~~p~i~viTnI~~dHl~ 134 (363)
.++.. ..+.++|++|+|+|++ +++.++. ++|+++|||||+.||++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~VlEvg~gg~~d~tn~-i~p~vaVITnI~~DHld 203 (487)
T 2vos_A 125 REIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRWDATNV-INAPVAVITPISIDHVD 203 (487)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCS-SCCSEEEECCCCCCBCS
T ss_pred HHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccc-cCCCEEEECCcchhhhh
Confidence 00000 0145789999999985 7887765 89999999999999999
Q ss_pred cCC-CHHHHHHHHHHhcccC---CCCcEEEEeCCChhHHHHH----hcCCccEEEeccCCCceecc---ccccceEEEec
Q 017969 135 RHK-TMKNYALTKCHLFSHM---VNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDT---EAKTASFEVPA 203 (363)
Q Consensus 135 ~~g-t~e~~~~~K~~i~~~~---~~~~~~v~n~dd~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 203 (363)
+|| |+|+|+.+|++|++.+ ++++++|+|.|||....+. .....++++|+.+ +.... ...+..+.+..
T Consensus 204 ~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~g~d--~~~~~~~~~~~g~~~~~~~ 281 (487)
T 2vos_A 204 YLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDSE--FAVLRRQIAVGGQVLQLQG 281 (487)
T ss_dssp CSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTTCEEEEBTTT--BEEEEEEEETTEEEEEEEE
T ss_pred hhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHHHHHcCCeEEEecCc--eEEEeeccccCCceEEEec
Confidence 999 9999999999999765 6788999999999765543 2224567777642 22211 11122344332
Q ss_pred CCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHc-------CCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCC
Q 017969 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-------GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276 (363)
Q Consensus 204 ~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~l-------gi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~ 276 (363)
.+.. +..+.++++|.||++|+++|+ +++..+ |++.+.|+++|++|+ +|||||++. . +..+|+| +
T Consensus 282 ~~~~--~~~~~l~l~G~hn~~Na~aAi--aa~~~l~~~~~~~gi~~~~i~~gL~~~~-~pGR~e~v~--~-~~~vi~D-~ 352 (487)
T 2vos_A 282 LGGV--YSDIYLPLHGEHQAHNAVLAL--ASVEAFFGAGAQRQLDGDAVRAGFAAVT-SPGRLERMR--S-APTVFID-A 352 (487)
T ss_dssp TTEE--EEEEEECCCSHHHHHHHHHHH--HHHHHHTTC----CCCHHHHHHHHHTCC-CTTSSEEEE--T-TTEEEEC-C
T ss_pred CCcc--cceeecCCCCHHHHHHHHHHH--HHHHHHhhccccCCCCHHHHHHHHHhCc-CCCceEEEc--C-CCeEEEE-C
Confidence 2222 113478999999999999999 777777 799999999999999 599999995 3 4578888 5
Q ss_pred CCCHHHHHHHHhccc----CCcEEEEEcCCCCCCCCCCccchhhhhhhcc-cCcEEEEEccc
Q 017969 277 ATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITVCAL 333 (363)
Q Consensus 277 a~np~s~~~al~~~~----~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~-~~~~vi~~G~~ 333 (363)
||||+|++++++.++ .+|+++|+|++.++ +++.+.+.+. .+|.+|+++..
T Consensus 353 AHNp~a~~a~l~~l~~~~~~~~~i~V~G~~~dk-------d~~~~~~~l~~~~d~vilt~~~ 407 (487)
T 2vos_A 353 AHNPAGASALAQTLAHEFDFRFLVGVLSVLGDK-------DVDGILAALEPVFDSVVVTHNG 407 (487)
T ss_dssp CCSHHHHHHHHHHHHHSCCCSEEEEEECCBTTB-------CHHHHHHHHTTTCSEEEECCCS
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCC-------CHHHHHHHHHhhCCEEEEeCCC
Confidence 999999999988874 35789999998775 3567777765 47999999853
No 14
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=3e-45 Score=359.26 Aligned_cols=270 Identities=16% Similarity=0.146 Sum_probs=203.9
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc------------cchhhhhhhhh--------------------
Q 017969 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFH-------------------- 88 (363)
Q Consensus 41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn------------ig~p~~~~~~~-------------------- 88 (363)
++.++|+||||||||||++||+++|++.|++++..++ .|.+++...+.
T Consensus 37 ~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~ig~~~~~~ 116 (428)
T 1jbw_A 37 QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADF 116 (428)
T ss_dssp GSSCEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred hcCcEEEEECCCChHHHHHHHHHHHHHCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHHHHHHHHHHhhcccccCC
Confidence 3578999999999999999999999999999987666 34333221100
Q ss_pred cccCC----------CCCCCCcEEEEEeCcc-cccccCccccccEEEEeCCChhhhccCC-CHHHHHHHHHHhcccCCCC
Q 017969 89 CIALP----------SSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNT 156 (363)
Q Consensus 89 ~~~~~----------~~~~~~d~~VlE~g~~-~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~K~~i~~~~~~~ 156 (363)
.++.. ..+.++|++|+|+|++ +++.++. ++|+++|||||+.||+|+|| |+|+|+++|++|++ ++
T Consensus 117 ~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~~-~~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~---~~ 192 (428)
T 1jbw_A 117 NVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNV-ITPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIK---RG 192 (428)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCS-CCCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCC---TT
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEecCCCcccccccc-CCCCEEEECcCcHhhhhhhCCCHHHHHHHHhcccc---CC
Confidence 00000 0145789999999975 8887776 79999999999999999999 99999999999998 58
Q ss_pred cEEEEeCCChhHHHHHhc----CCccEEEeccCCCceecc---ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHH
Q 017969 157 KLGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA 229 (363)
Q Consensus 157 ~~~v~n~dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A 229 (363)
+.+|+|.||+....+... ...++++|+.+ +.... ...+..+.+...+... ..+.++++|.||++|+++|
T Consensus 193 ~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~l~G~hn~~Na~aA 268 (428)
T 1jbw_A 193 IPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRD--FSVPKAKLHGWGQRFTYEDQDGRI--SDLEVPLVGDYQQRNMAIA 268 (428)
T ss_dssp CCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--EEEEEEEECSSSEEEEEEETTEEE--EEEEESCCSTHHHHHHHHH
T ss_pred ceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCcc--ceeeccccccCCceEEEecCCccc--cccccCCCChhHHHHHHHH
Confidence 899999999987665422 24567888752 22111 0112234443222222 1357899999999999999
Q ss_pred HHHHHHHHc-C-----CCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc---CCcEEEEEc
Q 017969 230 ALSVLGLDI-G-----VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLG 300 (363)
Q Consensus 230 ~~~a~~~~l-g-----i~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~IlG 300 (363)
+ +++..+ | +++++|+++|++|+ +|||||++. .++..+||| +|||+|++++++.++ ++|+++|+|
T Consensus 269 i--a~~~~l~g~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~~~viiD~--AhNp~s~~a~l~~l~~~~~~~~i~V~g 341 (428)
T 1jbw_A 269 I--QTAKVYAKQTEWPLTPQNIRQGLAASH-WPARLEKIS--DTPLIVIDG--AHNPDGINGLITALKQLFSQPITVIAG 341 (428)
T ss_dssp H--HHHHHHHHHTTCCCCHHHHHHHHHTCC-CTTSSEEEE--TTTTEEEEC--CCSHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred H--HHHHHHhhccCCCCCHHHHHHHHHhCc-CCCceEEec--CCCcEEEEC--CcCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 9 788888 9 99999999999999 799999996 356555554 789999999999885 357899999
Q ss_pred CCCCCCCCCCccchhhhhhhccc-CcEEEEEcc
Q 017969 301 GQAKVLNGQESNGFEKLIEPLNH-HRCVITVCA 332 (363)
Q Consensus 301 ~~~~~g~~~~~~~~~~l~~~l~~-~~~vi~~G~ 332 (363)
++.++ +|.++.+.+.+ +|.+|++++
T Consensus 342 ~~~~k-------d~~~~~~~~~~~~d~vi~~~~ 367 (428)
T 1jbw_A 342 ILADK-------DYAAMADRLTAAFSTVYLVPV 367 (428)
T ss_dssp CSSST-------THHHHHHHHHHHCSEEEECCC
T ss_pred eCCCC-------CHHHHHHHHhhhCCEEEEECC
Confidence 98543 57788887754 899999555
No 15
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=2.9e-45 Score=359.90 Aligned_cols=293 Identities=17% Similarity=0.129 Sum_probs=211.1
Q ss_pred eeeHHHHHHhhCC---CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeeccc------------chhhhhhhhhc---
Q 017969 28 VMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFHC--- 89 (363)
Q Consensus 28 ~l~~~~~~~~~~~---~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gni------------g~p~~~~~~~~--- 89 (363)
-|.++..+++.+. ++.|+||||||||||||++||+++|+++|++++++++- |.+++...+..
T Consensus 34 gL~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~ 113 (437)
T 3nrs_A 34 GLERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFA 113 (437)
T ss_dssp CCHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHH
Confidence 3566666655542 46789999999999999999999999999999876662 33333221100
Q ss_pred ----------ccCC----------CCCCCCcEEEEEeC-cccccccCccccccEEEEeCCChhhhccCC-CHHHHHHHHH
Q 017969 90 ----------IALP----------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKC 147 (363)
Q Consensus 90 ----------~~~~----------~~~~~~d~~VlE~g-~~~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~K~ 147 (363)
++.. ..+.++|++|+|+| +|++|.++. ++|+++|||||+.||+|+|| |+|+|+.+|+
T Consensus 114 ~v~~~~~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlggrld~tni-i~p~vaVITnI~~DHld~lG~t~e~ia~~Ka 192 (437)
T 3nrs_A 114 QIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDATNI-VDSDVAAITSIALDHTDWLGYDRESIGREKA 192 (437)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSSTTSGGGG-SCCSEEEECCCCCCBCCCTTCSHHHHHHHHG
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccc-cCCCEEEEcCccHHHHHHhCCcHHHHHHHHH
Confidence 0000 11467899999999 568998776 89999999999999999999 9999999999
Q ss_pred HhcccCCCCcEEEEeCCChh--HHHHHhcCCccEEEeccCCCceec--------cccccceEEEecCCeEEEEEeeccCC
Q 017969 148 HLFSHMVNTKLGLLPFGNQH--LNEAIKGHRFNLAWIGAFPGVKID--------TEAKTASFEVPAVGVVSQLQLHNMKV 217 (363)
Q Consensus 148 ~i~~~~~~~~~~v~n~dd~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~l 217 (363)
+|++ +++++|+|.||+. +...+.....++++++.+.++... .......+.+...+. . ...+++
T Consensus 193 ~I~~---~~~~~V~~~d~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~l 265 (437)
T 3nrs_A 193 GVFR---GGKPAVVGEPDMPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGER--Q--LTGLPV 265 (437)
T ss_dssp GGCC---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTTTEEEEC--------------CCEEEEETTE--E--EEEECC
T ss_pred hhcc---CCCeEEECCccHHHHHHHHHHHcCCcEEEecccceeeecccccccccccccCceEEEecCCc--c--eeccCC
Confidence 9998 5889999988763 334444456677888764222111 000112233332221 1 124555
Q ss_pred C--chhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----
Q 017969 218 M--GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---- 291 (363)
Q Consensus 218 ~--G~h~~~Nal~A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---- 291 (363)
+ |.||+.|+++|+ ++ ..+|++.++|+++|++|+ +|||||++. .+ ..+|+|+ ||||+|++++++.++
T Consensus 266 ~~~~~~Na~~Alaa~--~~-~~lgi~~~~i~~gL~~~~-~pGR~e~v~--~~-~~vi~D~-AHNp~a~~all~~l~~~~~ 337 (437)
T 3nrs_A 266 PNVPLANAATALAVL--HY-SELPLSDEAIRQGLQAAS-LPGRFQVVS--EQ-PLLILDV-AHNPHAARYLVNRLAQVIN 337 (437)
T ss_dssp CSSCHHHHHHHHHHH--HH-HTCCCCHHHHHHHHHHCC-CTTSSEEEE--TT-TEEEECC-CCSHHHHHHHHHHHHHTC-
T ss_pred cchhHHHHHHHHHHH--HH-hCCCCCHHHHHHHHHhCC-CCCceEEEe--cC-CeEEEEC-CCCHHHHHHHHHHHHhhcc
Confidence 5 889999988887 44 568999999999999999 599999995 34 4688885 999999999887765
Q ss_pred ------CCcEEEEEcCCCCCCCCCCccchhhhhhhcc-cCcEEEEEcccc-----hHHHHhhCC
Q 017969 292 ------GHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITVCALL-----FLKIVIQFP 343 (363)
Q Consensus 292 ------~~~~i~IlG~~~~~g~~~~~~~~~~l~~~l~-~~~~vi~~G~~~-----~~~~~~~~~ 343 (363)
++|+++|+|++.++ +++++.+.+. .++.++++|+.. ...+.+.+.
T Consensus 338 ~~~~~~~~r~i~V~G~~~dk-------d~~~~~~~l~~~~~~v~~~~~~~~r~~~~~~l~~~~~ 394 (437)
T 3nrs_A 338 PVNASKQGKVRAVVGMLSDK-------DIAGTLACLSERVDEWYCAPLEGPRGASAGQLAEHLV 394 (437)
T ss_dssp -------CCEEEEECCBTTB-------CHHHHHHHHTTTCCEEEECCCSSTTBCCHHHHHTTCS
T ss_pred hhhhcCCCCEEEEEeCCCCC-------CHHHHHHHHHhcCCEEEEeCCCCCCCCCHHHHHHHHh
Confidence 36799999987653 5888888876 489999998653 235555553
No 16
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=9.8e-45 Score=356.60 Aligned_cols=271 Identities=17% Similarity=0.178 Sum_probs=199.7
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeecc------------cchhhhhhhhh-------------------c
Q 017969 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFH-------------------C 89 (363)
Q Consensus 41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gn------------ig~p~~~~~~~-------------------~ 89 (363)
++.++|+||||||||||++||+++|++.|+++++.++ .|.|++...+. .
T Consensus 50 ~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (442)
T 1o5z_A 50 LEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFS 129 (442)
T ss_dssp GSSEEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHTTSTTTC
T ss_pred hcCCEEEEECCcCHHHHHHHHHHHHHHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHHHHHHHHHhhhcccccCC
Confidence 3678999999999999999999999999999987664 25555432110 0
Q ss_pred ccCC----------CCCCCCcEEEEEeC-cccccccCccccccEEEEeCCChhhhccCC-CHHHHHHHHHHhcccCCCCc
Q 017969 90 IALP----------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTK 157 (363)
Q Consensus 90 ~~~~----------~~~~~~d~~VlE~g-~~~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~ 157 (363)
++.. ..+.++|++|+|+| +++++.++. ++|+++|||||+.||+|+|| |+|+|+.+|++|++ +++
T Consensus 130 ~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~~-~~P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~---~~~ 205 (442)
T 1o5z_A 130 PSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNV-VFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIK---ERV 205 (442)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTCGGGG-CCCSCEEECCCCC-------CCHHHHHHHHGGGCC---TTC
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCcccccc-CCCCEEEECCccHhhhhhhCcCHHHHHHHHHhhcc---CCc
Confidence 0000 01357899999999 578888776 89999999999999999999 99999999999998 588
Q ss_pred EEEEeCCChhHHHHHh----cCCccEEEeccCCCceecc---ccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHH
Q 017969 158 LGLLPFGNQHLNEAIK----GHRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230 (363)
Q Consensus 158 ~~v~n~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~ 230 (363)
.+|+|.||+....+.. ....++++|+.+ +.... ...+..+.+... .. +..+.++++|.||++|+++|+
T Consensus 206 ~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~-~~--~~~~~l~l~G~hn~~NalaAi 280 (442)
T 1o5z_A 206 PLVTGERKREALKVMEDVARKKSSRMYVIDKD--FSVKVKSLKLHENRFDYCGE-NT--FEDLVLTMNGPHQIENAGVAL 280 (442)
T ss_dssp CEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--BEEEEEECCTTCEEEEEESS-SE--EEEEEESSCSTHHHHHHHHHH
T ss_pred cEEEcCCChHHHHHHHHHHHHcCCcEEEeCcc--eeeeccccccCCceEEEecc-cc--ccccccCCCcHhHHHHHHHHH
Confidence 9999999988766543 224567788752 22211 111223433322 11 123578999999999999999
Q ss_pred HHHHHH--HcCCCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCCCC
Q 017969 231 LSVLGL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK 304 (363)
Q Consensus 231 ~~a~~~--~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~~~ 304 (363)
+++. .+|+++++|+++|++|+ +|||||++. .++..+|.| +||||+|++++++.++ ++|+++|+|++.+
T Consensus 281 --a~~~~~~lgi~~~~i~~~L~~~~-~~gR~e~~~--~~~~~viiD-~AhNp~s~~~~l~~l~~~~~~~~~i~V~g~~~d 354 (442)
T 1o5z_A 281 --KTLEATGLPLSEKAIREGLKNAK-NLGRFEILE--KNGKMYILD-GAHNPHGAESLVRSLKLYFNGEPLSLVIGILDD 354 (442)
T ss_dssp --HHHHHHCCCCCHHHHHHHHHHCC-CTTSSEEEE--ETTEEEEEC-CCCSHHHHHHHHHHHHHHCTTCCEEEEECCCTT
T ss_pred --HHHHHhhcCCCHHHHHHHHHhCC-CCCceEEEE--cCCCeEEEE-CCcCHHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 8888 89999999999999999 699999996 343456677 5999999999999874 3678999998764
Q ss_pred CCCCCCccchhhhhhhccc-CcEEEEEccc
Q 017969 305 VLNGQESNGFEKLIEPLNH-HRCVITVCAL 333 (363)
Q Consensus 305 ~g~~~~~~~~~~l~~~l~~-~~~vi~~G~~ 333 (363)
+ ++.++.+.+.+ +|.++++|..
T Consensus 355 k-------d~~~~~~~l~~~~d~vi~~~~~ 377 (442)
T 1o5z_A 355 K-------NREDILRKYTGIFERVIVTRVP 377 (442)
T ss_dssp S-------CHHHHHGGGTTTCSEEEECCCS
T ss_pred C-------CHHHHHHHHHhhCCEEEEECCC
Confidence 3 57788887764 8999999854
No 17
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=1.7e-43 Score=346.19 Aligned_cols=266 Identities=18% Similarity=0.123 Sum_probs=196.0
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeEeeccc------------chhhhhhhhh-------------cccCC--
Q 017969 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFH-------------CIALP-- 93 (363)
Q Consensus 41 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~~~gni------------g~p~~~~~~~-------------~~~~~-- 93 (363)
++.++|+||||||||||++||+++|+++|+++++.++- |.|++...+. .++..
T Consensus 47 ~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~~~~~~t~~e~ 126 (422)
T 1w78_A 47 PAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARGDISLTYFEY 126 (422)
T ss_dssp CSSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred cCCcEEEEeCCcChHHHHHHHHHHHHHCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHhccCCCChHHH
Confidence 46789999999999999999999999999998765442 2222211100 00000
Q ss_pred --------CCCCCCcEEEEEeC-cccccccCccccccEEEEeCCChhhhccCC-CHHHHHHHHHHhcccCCCCcEEEEeC
Q 017969 94 --------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163 (363)
Q Consensus 94 --------~~~~~~d~~VlE~g-~~~l~~~~~~~~p~i~viTnI~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~~~v~n~ 163 (363)
..+.++|++|+|+| +++++.++. ++|+++|||||++||+|+|| |+|+|+.+|++|++ +++.+|+|.
T Consensus 127 ~t~~a~~~~~~~~~d~~VlEvgl~~~~d~t~~-~~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~---~~~~~v~~~ 202 (422)
T 1w78_A 127 GTLSALWLFKQAQLDVVILEVGLGGRLDATNI-VDADVAVVTSIALDHTDWLGPDRESIGREKAGIFR---SEKPAIVGE 202 (422)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSSSSTTSGGGG-SCCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCC---TTSEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCcccccccC-CCCCEEEECCcChhhhhhhCCCHHHHHHHHHhhcc---CCCcEEEcC
Confidence 01346899999999 578887765 89999999999999999999 99999999999997 578899988
Q ss_pred CChhH--HHHHhcCCccEEEeccCCCceeccccccceEEEecCCeEEEEEeeccCCCchhHHHHHHHHHHHHHHHHc--C
Q 017969 164 GNQHL--NEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI--G 239 (363)
Q Consensus 164 dd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h~~~Nal~A~~~a~~~~l--g 239 (363)
|++.. ...+.....++++|+.+ +....+ ...+.+...+... ..++++ .||++|+++|+ +++..+ |
T Consensus 203 d~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~--~~~~~~~~~~~~~----~~l~l~-~hn~~Na~aAi--a~~~~~~~g 271 (422)
T 1w78_A 203 PEMPSTIADVAQEKGALLQRRGVE--WNYSVT--DHDWAFSDAHGTL----ENLPLP-LVPQPNAATAL--AALRASGLE 271 (422)
T ss_dssp SSCCHHHHHHHHHHTCEEEEBTTT--BEEEEC--SSCEEEEETTEEE----EEECCC-SSCHHHHHHHH--HHHHHHTCC
T ss_pred ccHHHHHHHHHHHcCCceEEeCcc--eeeecc--CceEEEecCCccc----ccCCch-HHHHHHHHHHH--HHHHHhCCC
Confidence 77642 22222234567788752 222211 1223332222111 367888 99999999999 677765 8
Q ss_pred CCHHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCCCCCCCCCCccchh
Q 017969 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFE 315 (363)
Q Consensus 240 i~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~~~~g~~~~~~~~~ 315 (363)
+++++|+++|++|+ +|||||++. .++ .+|+|+ ||||+|++++++.++ ++|+++|+|++.++ +|+
T Consensus 272 i~~~~i~~~L~~~~-~~gR~e~~~--~~~-~~i~D~-Ahnp~s~~~~l~~l~~~~~~~~~i~V~g~~~~k-------d~~ 339 (422)
T 1w78_A 272 VSENAIRDGIASAI-LPGRFQIVS--ESP-RVIFDV-AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDK-------DIA 339 (422)
T ss_dssp CCHHHHHHHHHHCC-CTTSSEEEE--TTT-EEEEEC-CCSHHHHHHHHHHHHHSCSCSCEEEEECCBTTS-------CHH
T ss_pred CCHHHHHHHHHhCC-CCceEEEEe--CCC-eEEEEC-CCCHHHHHHHHHHHHHhCCCCCEEEEEeccCCC-------CHH
Confidence 99999999999999 599999995 344 577774 999999999988763 36899999987653 577
Q ss_pred hhhhhcc-cCcEEEEEccc
Q 017969 316 KLIEPLN-HHRCVITVCAL 333 (363)
Q Consensus 316 ~l~~~l~-~~~~vi~~G~~ 333 (363)
++.+.+. .+|.++++|..
T Consensus 340 ~~~~~l~~~~d~vi~~~~~ 358 (422)
T 1w78_A 340 GTLAWLKSVVDDWYCAPLE 358 (422)
T ss_dssp HHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHhhCCEEEEECCC
Confidence 8888775 58999999964
No 18
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.32 E-value=2.5e-12 Score=108.74 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=52.0
Q ss_pred HHHHHHHhhcCCCCCCeeEEEEeecCCEEEEEcCCCCCHHHHHHHHhccc----CCcEEEEEcCCCCC-CCCCCccchhh
Q 017969 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKV-LNGQESNGFEK 316 (363)
Q Consensus 242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~IlG~~~~~-g~~~~~~~~~~ 316 (363)
.++|+++|++|++++||||++. ..+++++||| |||||+|++++++.++ ++|+++|+|..... -+ ...+.+
T Consensus 11 ~~~i~~~L~~f~gv~~R~E~i~-~~~g~~vi~D-yaHnP~si~a~l~al~~~~~~~riivvf~~g~~s~r~---k~~~~~ 85 (163)
T 3mvn_A 11 VDLGTENLYFQSNAQRRLEVKG-VVNNITVYDD-FAHHPTAITATIDALRAKVGQQRILAVLEPRSNTMKM---GVHKHE 85 (163)
T ss_dssp ----------------CCEEEE-EETTEEEEEE-CCCSHHHHHHHHHHHHHHHTTSCEEEEECCC------------CHH
T ss_pred HHHHHHHHHhCCCCCCCeEEEe-cCCCcEEEEc-CCCCHHHHHHHHHHHHHhcCCCcEEEEECCCCcchhh---HHHHHH
Confidence 4578999999999999999996 4688999999 7999999999988764 46888888753211 00 123467
Q ss_pred hhhhcccCcEEEEEccc
Q 017969 317 LIEPLNHHRCVITVCAL 333 (363)
Q Consensus 317 l~~~l~~~~~vi~~G~~ 333 (363)
+++.++.+|.+|++|+.
T Consensus 86 ~~~~~~~aD~vi~~~~~ 102 (163)
T 3mvn_A 86 LATSLQDADSVFIYQPP 102 (163)
T ss_dssp HHHHHTTCSEEEEECC-
T ss_pred HHHHHhcCCEEEEECCC
Confidence 77777779999999965
No 19
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=95.84 E-value=0.0021 Score=62.69 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=50.5
Q ss_pred eeeeccccC-CCcHHHHHHHhcCCce--eeHHHHHHhhCC---CCCc-EEEEeCCCChHHH-HHHHHHHHHhc
Q 017969 4 LWLFLLEFQ-LKATGLACLLQSGKRV--MSELDFAAQVIP---RSIK-ILAVTGTNGKSTV-VTFVGQMLNHL 68 (363)
Q Consensus 4 ~~~~~~~~~-~~~p~l~~a~~~~~~~--l~~~~~~~~~~~---~~~~-vI~VTGTnGKTTT-~~~l~~iL~~~ 68 (363)
++|.++..+ .+++..+.|+++|+++ .+++++.....+ .+.+ +|+|| |||||++ +.+|.+-|.+.
T Consensus 75 lVi~at~~~~~n~~i~~~a~~~~i~vn~~d~~e~~~~~~pa~~~~~~l~iaIs-T~Gksp~la~~ir~~ie~~ 146 (457)
T 1pjq_A 75 LAIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSIIDRSPLMVAVS-SGGTSPVLARLLREKLESL 146 (457)
T ss_dssp EEEECCSCHHHHHHHHHHHHHTTCEEEETTCTTSSSEECCEEEEETTEEEEEE-CTTSCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHHHHcCCEEEECCCcccCceEeeeEEEeCCeEEEEE-CCCCChHHHHHHHHHHHHh
Confidence 566677777 4888899999999998 888887655542 2334 99999 9999998 88888888865
No 20
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.52 E-value=0.076 Score=48.93 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=31.1
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+.++|+|+| -.|||||+.-|+..|.+.|+++....
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 678999996 77899999999999999999997543
No 21
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=93.10 E-value=0.27 Score=45.82 Aligned_cols=104 Identities=20% Similarity=0.149 Sum_probs=61.8
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEeecc----------cchhhhhhhhh-------cccCCCCCCCCcE
Q 017969 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGN----------LGNPLSEAAFH-------CIALPSSKPKFQV 101 (363)
Q Consensus 42 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~gn----------ig~p~~~~~~~-------~~~~~~~~~~~d~ 101 (363)
+.+.|.|+|| -|||+|+..|...|++.|++++..+. .|.|+.....+ .+......+++|+
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~~D~~~~~~~ag~~e~~i~~~~~~~~D~ 247 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEI 247 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECCGGGSBGGGHHHHHHHHHHHHHHTTCSE
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCCCCceecchhhHHHHhhHHHhhhcCCCE
Confidence 4678999997 59999999999999999999865433 23232211111 0000000356789
Q ss_pred EEEEeCccccccc------Cc--cccccEEEEeC-CChhhhccC------CCHHHHHHH
Q 017969 102 AVVEVSSYQMEIP------NK--YFCPTVSVVLN-LTPDHLERH------KTMKNYALT 145 (363)
Q Consensus 102 ~VlE~g~~~l~~~------~~--~~~p~i~viTn-I~~dHl~~~------gt~e~~~~~ 145 (363)
.|+|-..+=.... .. -.+|+..|+.- -++.|++.+ +++++....
T Consensus 248 ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~i~~~i~~ 306 (350)
T 2g0t_A 248 VFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRL 306 (350)
T ss_dssp EEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCCHHHHHHH
T ss_pred EEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcCHHHHHHH
Confidence 9999873311110 01 15788888865 565666544 555554443
No 22
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=92.59 E-value=0.13 Score=45.70 Aligned_cols=40 Identities=30% Similarity=0.417 Sum_probs=31.8
Q ss_pred HhhCCCCCcEEEEeCCC---ChHHHHHHHHHHHHhcCCCeEee
Q 017969 36 AQVIPRSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 36 ~~~~~~~~~vI~VTGTn---GKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
.++..++.+.|-||||. |||+++..|...|+++|+++..+
T Consensus 19 ~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~f 61 (251)
T 3fgn_A 19 NLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVC 61 (251)
T ss_dssp ---CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 33443567899999986 99999999999999999998654
No 23
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.99 E-value=0.2 Score=41.69 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=29.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
..++|+|+|.. ||||+...|...|+..|++++..-+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 46799999964 9999999999999999988865443
No 24
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.89 E-value=0.17 Score=42.66 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=27.7
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhcCCCeEee
Q 017969 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 44 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
++|+|+ |-.||||++..|+..|...|.++.+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 688888 56789999999999999999988654
No 25
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=91.18 E-value=0.23 Score=43.30 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=29.9
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+.+.|-|||| .|||+++..|.+.|+++|.++..+
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~ 39 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCL 39 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence 4678999998 599999999999999999998653
No 26
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=91.06 E-value=0.19 Score=43.13 Aligned_cols=31 Identities=29% Similarity=0.187 Sum_probs=27.3
Q ss_pred cEEEEeCC---CChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++|.||++ .||||++.-|+..|.+.|.++..
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 57888876 68999999999999999999865
No 27
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.04 E-value=0.3 Score=42.37 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=28.7
Q ss_pred CCcEEEEe---CCCChHHHHHHHHHHHHhc-CCCeEee
Q 017969 42 SIKILAVT---GTNGKSTVVTFVGQMLNHL-GIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VT---GTnGKTTT~~~l~~iL~~~-g~~~~~~ 75 (363)
..++|+|+ |-.||||++..|+..|... |.++.+.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 56789998 5578999999999999998 9888543
No 28
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.04 E-value=0.84 Score=41.43 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=29.2
Q ss_pred CCCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEe
Q 017969 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 41 ~~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++.++|.|||+ .||||++.-|+..|.+.|.++.+
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLL 138 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLF 138 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEE
Confidence 45689999986 68999999999999999987744
No 29
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=89.55 E-value=0.55 Score=42.44 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=28.4
Q ss_pred CCCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeE
Q 017969 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 41 ~~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~ 73 (363)
++.++|.||++ .||||++.-|+..|.+.|.++.
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVL 125 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVL 125 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEE
Confidence 46789999876 5899999999999999987774
No 30
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=89.42 E-value=0.64 Score=41.06 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=33.0
Q ss_pred HHHHHHhhCCCCCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEee
Q 017969 31 ELDFAAQVIPRSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 31 ~~~~~~~~~~~~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
..+...++. +..++|+|+++ .||||++.-|+..|...|.++.+.
T Consensus 7 ~~~~a~~l~-~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli 53 (262)
T 2ph1_A 7 DEEIKERLG-KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL 53 (262)
T ss_dssp HHHHHHHHT-TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhhhhhhhc-cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 334444444 34679999875 579999999999999999988653
No 31
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=89.29 E-value=0.4 Score=42.30 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=30.2
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
..+.|-|||| .|||+++..|.+.|+++|.+++.+
T Consensus 20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~f 56 (242)
T 3qxc_A 20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILL 56 (242)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEE
Confidence 4689999998 699999999999999999998654
No 32
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=89.13 E-value=0.42 Score=41.24 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=27.2
Q ss_pred cEEEEeCC---CChHHHHHHHHHHHHhcCCCeEee
Q 017969 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 44 ~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
++|+|+++ .||||++..|+..|.+.|.++.+.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV 37 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 57888764 589999999999999999988653
No 33
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=89.03 E-value=0.7 Score=41.33 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=29.2
Q ss_pred CCCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEe
Q 017969 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 41 ~~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++.++|.||++ .||||++.-|+..|.+.|.++.+
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLL 116 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLI 116 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEE
Confidence 46789999965 69999999999999999988744
No 34
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=88.89 E-value=0.37 Score=42.52 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=29.1
Q ss_pred CCcEEEEeCCC---ChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTGTn---GKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+.++|+|+++. ||||++..|+..|...|.++.+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 41 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV 41 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence 56899998654 79999999999999999988654
No 35
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.31 E-value=0.53 Score=43.29 Aligned_cols=35 Identities=23% Similarity=0.504 Sum_probs=29.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+..+|+|+|.+ |||||+..|+..|...|.++.+.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45699999865 899999999999999888876544
No 36
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=88.01 E-value=0.53 Score=42.28 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=27.3
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++|+|+ |-.||||++..|+..|...|.++.+
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vll 38 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAV 38 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 589998 5678999999999999999998864
No 37
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=87.62 E-value=0.63 Score=42.51 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=28.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+..+|+|+|.+ |||||+..|+..|...|.++.+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 45689999965 799999999999998887775443
No 38
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=87.51 E-value=0.89 Score=38.39 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=27.4
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEe
Q 017969 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 41 ~~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~ 74 (363)
.+..+|+|+|.+ ||||++.+|...|...|..+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 356799999965 8999999999999877655543
No 39
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=87.13 E-value=0.11 Score=46.86 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=42.2
Q ss_pred eeeeccccC-CCcHHHHHHHhc---CCce--eeHHHHHHhhCC---CCCc--EEEEeCCCChHHHH-HHHHHHHHh
Q 017969 4 LWLFLLEFQ-LKATGLACLLQS---GKRV--MSELDFAAQVIP---RSIK--ILAVTGTNGKSTVV-TFVGQMLNH 67 (363)
Q Consensus 4 ~~~~~~~~~-~~~p~l~~a~~~---~~~~--l~~~~~~~~~~~---~~~~--vI~VTGTnGKTTT~-~~l~~iL~~ 67 (363)
+++..+.-+ .+++..+.|+++ ++++ ..+++.....++ .+.+ +|+|| |||||++. ..|..-+.+
T Consensus 109 lViaat~d~~~n~~I~~~Ar~~f~~~i~VNvvd~pel~~f~~Pa~~~~g~~l~IaIS-T~Gksp~lA~~ir~~ie~ 183 (274)
T 1kyq_A 109 IIMTCIPDHPESARIYHLCKERFGKQQLVNVADKPDLCDFYFGANLEIGDRLQILIS-TNGLSPRFGALVRDEIRN 183 (274)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHCTTSEEEETTCGGGBSEECCEEEEETTTEEEEEE-ESSSCHHHHHHHHHHHHH
T ss_pred EEEEcCCChHHHHHHHHHHHHhcCCCcEEEECCCcccCeeEeeeEEEeCCCEEEEEE-CCCCCcHHHHHHHHHHHH
Confidence 455555554 567778889998 8888 777776543322 2334 99999 99999764 455555544
No 40
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=86.67 E-value=0.64 Score=40.85 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=26.6
Q ss_pred cEEEEeC---CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 44 ~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
++|+|++ -.||||++..|+..|...|.++.+.
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIV 37 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 5777765 5689999999999999999988653
No 41
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=86.61 E-value=0.71 Score=39.37 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=24.8
Q ss_pred EEEEe---CCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 45 vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
+|+|+ |-.||||++..|+..|...| ++.+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vll 33 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLL 33 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEE
Confidence 56665 67799999999999999999 8864
No 42
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=86.52 E-value=0.63 Score=41.09 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=28.1
Q ss_pred CCCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEee
Q 017969 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 41 ~~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
++.++|+|++. .||||++..|+..|. .|.++.+.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vlli 61 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLI 61 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEE
Confidence 46789999765 579999999999999 99988643
No 43
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=86.17 E-value=0.8 Score=39.99 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=26.6
Q ss_pred cEEEEeC---CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++|+|++ -.||||++..|+..|...|.++.+
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll 36 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence 5788865 568999999999999999998864
No 44
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=85.83 E-value=0.62 Score=42.15 Aligned_cols=30 Identities=33% Similarity=0.511 Sum_probs=23.0
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCC
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIE 71 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~ 71 (363)
+.++|+|||. .||||++.+|...|...|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~ 35 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVK 35 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence 4569999995 69999999999998765543
No 45
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=85.81 E-value=0.39 Score=43.27 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=22.9
Q ss_pred eCCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
-|-.||||++..|+..|...|.++.+
T Consensus 45 KGGvGKTT~a~nLA~~la~~G~rVll 70 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLNLKVLM 70 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCchHHHHHHHHHHHHHhCCCeEEE
Confidence 35789999999999999999998864
No 46
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=84.86 E-value=1.3 Score=37.54 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=26.6
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeE
Q 017969 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 41 ~~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~ 73 (363)
++..+|+|.|-| ||||+..+|..++...|..++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g 54 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAE 54 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceE
Confidence 356799999965 899999999999987654443
No 47
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=84.13 E-value=1.2 Score=40.34 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=28.3
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++.++|+|+| -.||||++.-|+..|.+.|.++.+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vll 74 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQ 74 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence 3567888874 568999999999999999998854
No 48
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=83.49 E-value=1.1 Score=41.61 Aligned_cols=35 Identities=14% Similarity=0.021 Sum_probs=30.3
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+.+.|.|+|| -|||||+..|.+.|++.|+++...+
T Consensus 151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~ 188 (349)
T 2obn_A 151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLA 188 (349)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEe
Confidence 3578999997 5999999999999999999986543
No 49
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=83.46 E-value=1.3 Score=41.02 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=30.3
Q ss_pred CCcEEEEe---CCCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 42 ~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
+.++|.|+ |-.||||++.-++..|...|.++.+...
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 62 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVST 62 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 56788887 5678999999999999999999876553
No 50
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=82.97 E-value=1.1 Score=37.14 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=24.8
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
.|+|+| -.||||.+.+|+..|...|..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 689999 57999999999999998888764
No 51
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=82.61 E-value=1.3 Score=42.50 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=28.8
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEeec
Q 017969 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 43 ~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
..+|.++|.+ |||||+.-|+..|...|.++.+.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5689999954 699999999999999999886543
No 52
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=82.22 E-value=1.9 Score=35.70 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=28.5
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
..++|+|+|. .||||+...|...|...|.+++...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence 3579999996 5899999999888988888875433
No 53
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=81.97 E-value=1.4 Score=37.16 Aligned_cols=31 Identities=26% Similarity=0.258 Sum_probs=26.9
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
+..+|.|+| ..||||.+.+|+.-|...|+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 456899999 5899999999999998888766
No 54
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=81.78 E-value=1.7 Score=39.44 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=27.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+..+|++.|-| |||||...|+..+...+.++...|
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45688999866 899999999999997765665444
No 55
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=81.29 E-value=1.4 Score=40.40 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=27.5
Q ss_pred CcEEEEe---CCCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 43 ~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
.++|.|+ |-.||||++..++..|.+.|.++.+..
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3455555 568999999999999999999997644
No 56
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=81.05 E-value=2 Score=40.46 Aligned_cols=34 Identities=9% Similarity=0.199 Sum_probs=27.7
Q ss_pred CCCcEEEEe---CCCChHHHHHHHHHHHHh------cCCCeEe
Q 017969 41 RSIKILAVT---GTNGKSTVVTFVGQMLNH------LGIEAFV 74 (363)
Q Consensus 41 ~~~~vI~VT---GTnGKTTT~~~l~~iL~~------~g~~~~~ 74 (363)
...++|+|+ |-.||||++..|+..|.. .|.++.+
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVll 148 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILV 148 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEE
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEE
Confidence 357899998 567899999999999984 6777754
No 57
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=81.05 E-value=1 Score=42.63 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=22.0
Q ss_pred CCCcEEEEe---CCCChHHHHHHHHHHHH------hcCCCeEe
Q 017969 41 RSIKILAVT---GTNGKSTVVTFVGQMLN------HLGIEAFV 74 (363)
Q Consensus 41 ~~~~vI~VT---GTnGKTTT~~~l~~iL~------~~g~~~~~ 74 (363)
...++|+|+ |-.|||||+..|+..|. ..|.++.+
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVll 151 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILV 151 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEE
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEE
Confidence 367899999 67799999999999998 56777643
No 58
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=80.49 E-value=1.7 Score=40.71 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=29.9
Q ss_pred CCCcEEEEeC---CCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 41 RSIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 41 ~~~~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
++.++|+|++ -.||||++.-|+..|...|.++.+..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3578999986 45799999999999999998886543
No 59
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=79.91 E-value=1.5 Score=36.17 Aligned_cols=32 Identities=34% Similarity=0.508 Sum_probs=27.1
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEee
Q 017969 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 44 ~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
++|+|+|.+ ||||+..+|...+...|++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I 36 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVV 36 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE
Confidence 689999965 79999999999999988777543
No 60
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=79.85 E-value=1.8 Score=35.63 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=24.5
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
+|+|+| ..||||.+.+|+.-|...|..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 688888 47999999999999988787663
No 61
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=79.64 E-value=1.9 Score=38.50 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=25.7
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VT--GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++|+|+ |-.||||++.-|+..|...|.++.+
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVll 35 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMI 35 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEE
Confidence 455554 5689999999999999999998864
No 62
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=79.47 E-value=1.9 Score=39.39 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=28.4
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 44 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
++|.|+ |-.||||++.-++..|.+.|.++.+...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 50 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIST 50 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 677776 6778999999999999999999865443
No 63
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=79.34 E-value=2 Score=35.12 Aligned_cols=31 Identities=29% Similarity=0.264 Sum_probs=25.7
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCe
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (363)
+..+|+++|. .||||++.+|+..|...|..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~ 36 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC 36 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcE
Confidence 4568999995 689999999999998777654
No 64
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=78.73 E-value=2.4 Score=39.57 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=27.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+..+|++.|-| |||||...|+..+...+.++...|
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 45689999866 899999999999997766665444
No 65
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=78.71 E-value=1.8 Score=36.31 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=26.6
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
+..+|+|+| ..||||.+.+|+.-|...++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 456899999 5899999999999998877766
No 66
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=78.37 E-value=1.2 Score=41.59 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=26.8
Q ss_pred cEEEEeC---CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 44 ~vI~VTG---TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
++|+|++ -.||||++.-|+..|...|.+|.+.
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlI 36 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYV 36 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 5777775 4689999999999999999998643
No 67
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=76.62 E-value=2.6 Score=40.46 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=28.6
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeec
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
.++|.++|. .|||||+.-|+..|...|.++.+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 568888885 5799999999999999999986543
No 68
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=76.48 E-value=2.9 Score=37.79 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=27.5
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHh-cCCCeEeec
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNH-LGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~-~g~~~~~~g 76 (363)
+..+|+++|. .|||||+..|+..+.. .|.++.+.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4568888775 4899999999999985 888776544
No 69
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=76.28 E-value=1.9 Score=37.84 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=25.2
Q ss_pred cEEEE--eCCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAV--TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~V--TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++|+| -|-.||||++..|+..|...|.++.+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vll 34 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMV 34 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEE
Confidence 34555 45679999999999999999998864
No 70
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=75.96 E-value=3.1 Score=40.56 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=27.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+..+|+|.|-| ||||+...|+.++...+.++.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 45689999966 79999999999999877666554
No 71
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=75.92 E-value=2.3 Score=38.37 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=24.4
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHhcC
Q 017969 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLG 69 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g 69 (363)
.+..+|+|+| ..||||++.+|...|...|
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g 59 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY 59 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 3567999999 4799999999999998653
No 72
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=75.39 E-value=4.2 Score=33.98 Aligned_cols=31 Identities=35% Similarity=0.377 Sum_probs=26.3
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHhcCCC
Q 017969 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIE 71 (363)
Q Consensus 41 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~ 71 (363)
.+..+|+|+|- .||||+..+|+..|...|..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 46789999995 68999999999999876754
No 73
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=75.29 E-value=3.5 Score=36.68 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=30.8
Q ss_pred CCCcEEEEeC----CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 41 RSIKILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 41 ~~~~vI~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
...|.|-||| +-||+-|++-|..+|+.+|+++..
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~ 58 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS 58 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCccee
Confidence 3679999999 789999999999999999999854
No 74
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=74.99 E-value=2.7 Score=39.07 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=27.4
Q ss_pred CcEEEEe---CCCChHHHHHHHHHHHH--hcCCCeEeec
Q 017969 43 IKILAVT---GTNGKSTVVTFVGQMLN--HLGIEAFVGG 76 (363)
Q Consensus 43 ~~vI~VT---GTnGKTTT~~~l~~iL~--~~g~~~~~~g 76 (363)
.++|.|| |-.||||++.-|+..|. +.|.++.+..
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3455555 57899999999999999 9999986544
No 75
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=74.10 E-value=3.7 Score=37.01 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=28.1
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
..+|+|+| -.||||++..|+..+...|.++...+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 56899998 46899999999999998887775544
No 76
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=74.09 E-value=1.9 Score=37.66 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=21.3
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~ 67 (363)
+..+|+||| ..||||++.+|+..|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 456899999 46999999999887653
No 77
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=73.85 E-value=2.6 Score=38.39 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=23.9
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHHhc
Q 017969 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (363)
Q Consensus 41 ~~~~vI~VTGTn--GKTTT~~~l~~iL~~~ 68 (363)
.+..+|+|.|.| ||||+..+|..+|...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 356799999965 8999999999999863
No 78
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=73.72 E-value=3.6 Score=33.65 Aligned_cols=30 Identities=47% Similarity=0.544 Sum_probs=24.9
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhcCCCeE
Q 017969 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 44 ~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~ 73 (363)
++|.|+|. .||||.+..|+.-|...|+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 33 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNK 33 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEE
Confidence 46888884 7999999999999988776653
No 79
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=73.41 E-value=2.3 Score=35.45 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=20.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL 65 (363)
+..+|+|+|-| ||||+..+|...+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45799999976 7999999998875
No 80
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=73.37 E-value=2.6 Score=35.36 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=21.5
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHHHhcC
Q 017969 44 KILAVTGTN--GKSTVVTFVGQMLNHLG 69 (363)
Q Consensus 44 ~vI~VTGTn--GKTTT~~~l~~iL~~~g 69 (363)
.+|+|+|-| ||||+..+|...+...|
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHHhhcccCC
Confidence 357888866 59999999999998666
No 81
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=73.36 E-value=4.7 Score=33.07 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=26.6
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCe
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (363)
+..+|.++|. .||||.+..|+..|...|.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 5678999995 789999999999999887665
No 82
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=73.16 E-value=3.8 Score=39.20 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=27.6
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhc-CCCeEe
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHL-GIEAFV 74 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~-g~~~~~ 74 (363)
+.++|.|+| -.|||||+.-|+..|... |.++.+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVll 134 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLV 134 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 346888877 568999999999999998 998864
No 83
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=72.74 E-value=3.2 Score=38.25 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=24.6
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 50 GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 50 GTnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
|-.||||++.-++..|...|.++.+...
T Consensus 25 GGvGKTt~a~~lA~~la~~g~~vllid~ 52 (334)
T 3iqw_A 25 GGVGKTTTSCSLAIQLAKVRRSVLLLST 52 (334)
T ss_dssp TTSSHHHHHHHHHHHHTTSSSCEEEEEC
T ss_pred CCccHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 6789999999999999999999876554
No 84
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=71.41 E-value=4.8 Score=36.97 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=28.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+..+|++.|-| |||||...|+..++..+.++...|
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45688998855 799999999999998887775544
No 85
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=71.40 E-value=3 Score=36.18 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=21.3
Q ss_pred ceeeHHHHHHhhCCCCCcEEEEeCCC--ChHHHHHHHHHHH
Q 017969 27 RVMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQML 65 (363)
Q Consensus 27 ~~l~~~~~~~~~~~~~~~vI~VTGTn--GKTTT~~~l~~iL 65 (363)
+++..+.+-. .+..+|||+|-| ||||++.+|...|
T Consensus 13 ~~l~~isl~i----~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 13 LGTENLYFQS----MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eeecceeccC----CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4555554322 255799999965 8999999999988
No 86
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=71.26 E-value=2.9 Score=35.19 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=22.0
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
.-.+|+||| -.||||++.+|+..| |..+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l---g~~v 40 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY---GAHV 40 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH---CCEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc---CCEE
Confidence 346899999 479999999998865 5554
No 87
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=71.16 E-value=4.4 Score=35.78 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=30.0
Q ss_pred CCCcEEEEeC----CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 41 RSIKILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 41 ~~~~vI~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
.+.|.|-||| +-||+-|++-|..+|+.+|+++..
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~ 58 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS 58 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEEC
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEE
Confidence 3678999999 569999999999999999999843
No 88
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=70.83 E-value=1.7 Score=37.35 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=22.3
Q ss_pred eCCCChHHHHHHHHHHHHhcCCCeEe
Q 017969 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
.|-.||||++.-|+..|...|.++.+
T Consensus 8 kGGvGKTt~a~~LA~~la~~g~~Vll 33 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDYDKIYA 33 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45667999999999999999988854
No 89
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=70.64 E-value=4.5 Score=37.22 Aligned_cols=36 Identities=36% Similarity=0.397 Sum_probs=29.4
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEeec
Q 017969 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 41 ~~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
.+.++|+|+|.+ ||||+...|...+...|.++...+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 467899999965 799999999999988887775443
No 90
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=70.21 E-value=2.9 Score=35.09 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=21.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+|+|+|.| ||||+..+|...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55799999965 69999999999886
No 91
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=69.95 E-value=6.4 Score=33.08 Aligned_cols=31 Identities=26% Similarity=0.247 Sum_probs=26.0
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHH-hcCCCe
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLN-HLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~-~~g~~~ 72 (363)
+..+|.|+| ..||||.+.+|+..|. ..|..+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~ 57 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHA 57 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcE
Confidence 567999999 5799999999999998 677554
No 92
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=69.92 E-value=4.5 Score=35.49 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=26.4
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
+.++|.++| ..||||.+..|+.-|...|..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 356888888 57999999999999988887653
No 93
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=69.66 E-value=5.7 Score=35.98 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=27.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+..+|+|.|-| ||||+...|+..+...+.++...|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 35688888855 799999999999998776665444
No 94
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=69.01 E-value=5.5 Score=36.82 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=29.1
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
.+.++|+|+| -.||||++.-|...|...|.++...
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 3567999999 4689999999999998889887644
No 95
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=68.64 E-value=6 Score=36.35 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=29.0
Q ss_pred CCCcEEEEeCCCC--hHHHHHHHHHHHHhcCCCeEeec
Q 017969 41 RSIKILAVTGTNG--KSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 41 ~~~~vI~VTGTnG--KTTT~~~l~~iL~~~g~~~~~~g 76 (363)
.+..+|+|+|.+| |||+...|...+...+.++...|
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 4678999999775 99999999999987766665444
No 96
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=68.26 E-value=5.7 Score=36.38 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.5
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHh
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQMLNH 67 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL~~ 67 (363)
..+|||+|. .||||++..|..+|..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 348999995 5899999999999974
No 97
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=68.19 E-value=3.9 Score=32.92 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=19.9
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
...+|+|+|. .||||.+.+|+.-|.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4579999994 789999999988774
No 98
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=67.65 E-value=6.8 Score=33.41 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=27.6
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
+...|.+.| -.||||.+..|..-|...|+.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~ 38 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQ 38 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 356899999 56899999999999999998774
No 99
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=67.10 E-value=5.9 Score=35.75 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=27.9
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeec
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
..+|+++| -.||||++..|+..+...|.++.+.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45888888 45799999999999999888876543
No 100
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=66.61 E-value=4.4 Score=33.48 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEeCCCC--hHHHHHHHHHHHH
Q 017969 45 ILAVTGTNG--KSTVVTFVGQMLN 66 (363)
Q Consensus 45 vI~VTGTnG--KTTT~~~l~~iL~ 66 (363)
.++|+|-|| |||+..+|...+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999876 9999999999985
No 101
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=66.51 E-value=6.2 Score=37.65 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=27.8
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeec
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
..+|+|+|- .|||||+..|+..|...|.++.+.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 457888874 5899999999999999888876543
No 102
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=66.50 E-value=5 Score=33.34 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.4
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcC
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLG 69 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g 69 (363)
..+|.|+| ..||||.+..|+.-|...|
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 46899999 5899999999999988766
No 103
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=66.47 E-value=3 Score=35.72 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=15.8
Q ss_pred CCcEEEEeCCC--ChHHHHHHHH-HHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVG-QMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~-~iL~ 66 (363)
+..+|+|+|.| ||||+..+|. ..+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45799999976 7999999998 7764
No 104
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=65.93 E-value=2.9 Score=34.59 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.6
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 44 ~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
++|+|+|-| ||||+..+|...+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 478899966 69999999998886
No 105
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=65.42 E-value=4.5 Score=33.60 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=19.7
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHH
Q 017969 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 44 ~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
++|+|||. .||||++.+|+..|.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 38999995 699999999988773
No 106
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=65.12 E-value=6.6 Score=38.37 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=27.3
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+.++|+|+|. .|||||+.-|+..|...|.++.+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllV 135 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI 135 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 3558999984 689999999999999999887644
No 107
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=64.97 E-value=3.5 Score=34.27 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL 65 (363)
+..+|+|+|.+ ||||++.+|...+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999965 8999999988776
No 108
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=64.97 E-value=6.6 Score=31.98 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=23.5
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCC
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGI 70 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~ 70 (363)
..+|.|+| -.||||.+..|+.-|...|.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~ 32 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGV 32 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 35889999 47999999999999987763
No 109
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=64.26 E-value=5 Score=32.07 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=19.0
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHH
Q 017969 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 44 ~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
++|.|+|. .||||++..|+.-|.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 47899995 689999999987763
No 110
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=63.76 E-value=5.7 Score=33.55 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=19.3
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL 65 (363)
..+|+|+|. .||||.+.+|+..|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999995 56999999998876
No 111
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=63.75 E-value=7.1 Score=34.43 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhc
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~ 68 (363)
+..+++|+|-| ||||+..+|...+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 56799999965 8999999999988753
No 112
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=63.08 E-value=4.7 Score=33.34 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=22.3
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeE
Q 017969 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 41 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~ 73 (363)
.+..+|+|+|. .||||++.+|+.. |..+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~----g~~~i 36 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW----GYPVL 36 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT----TCCEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC----CCEEE
Confidence 35678999994 6999999988874 66553
No 113
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=62.80 E-value=7.4 Score=32.64 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=25.0
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
.|.|-| -.||||-+.+|..-|++.|.++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~ 33 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 356666 579999999999999999988753
No 114
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=62.19 E-value=5.2 Score=36.18 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+|+|+|.| ||||++.+|..++.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 55799999965 69999999999986
No 115
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=61.14 E-value=12 Score=31.35 Aligned_cols=34 Identities=6% Similarity=-0.129 Sum_probs=21.6
Q ss_pred CCcEEEEeCCCChHHHHHHHHH--HHHhcCCCeEee
Q 017969 42 SIKILAVTGTNGKSTVVTFVGQ--MLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTGTnGKTTT~~~l~~--iL~~~g~~~~~~ 75 (363)
+.+++.++|+.|++-|+.++.. =+..+|.++...
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 5679999999544444444444 444578887543
No 116
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=61.12 E-value=7 Score=33.72 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=28.4
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHh-cCCCeEe
Q 017969 41 RSIKILAVTG--TNGKSTVVTFVGQMLNH-LGIEAFV 74 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~-~g~~~~~ 74 (363)
.+...|.|.| -.||||.+..|..-|.. .|+++..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 3567999999 56899999999999999 8876643
No 117
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=60.78 E-value=6.2 Score=32.36 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.3
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
+.++|.|+| -.||||.+.+|+.-|
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 557899999 478999999998876
No 118
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=59.82 E-value=11 Score=34.58 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=28.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+.++|+|+|.+ ||||+...|...+...+.++...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 36799999965 799999999988887776765544
No 119
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=59.64 E-value=7.1 Score=32.83 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=21.1
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 41 ~~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
.+..+|+|+|.+ ||||++.+|...+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356799999976 69999998877654
No 120
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=59.62 E-value=4.8 Score=33.49 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=19.7
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhcCCCe
Q 017969 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 44 ~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (363)
.+|+|+|. .||||.+.+|+. + |..+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~---g~~~ 28 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L---GAYV 28 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T---TCEE
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C---CCEE
Confidence 47999995 589999999988 5 5444
No 121
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=59.55 E-value=11 Score=32.01 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=24.5
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhcCC
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGI 70 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~ 70 (363)
.+.|.+.|. .||||.+..|..-|...|.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 468888884 5699999999999999997
No 122
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=59.21 E-value=11 Score=36.69 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=29.7
Q ss_pred CCCcEEEEeCC------CChHHHHHHHHHHHHhcCCCeEe
Q 017969 41 RSIKILAVTGT------NGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 41 ~~~~vI~VTGT------nGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
++.++|.||.+ -|||||+.=|+..|.+.|.++.+
T Consensus 55 ~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLL 94 (557)
T 3pzx_A 55 PDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMV 94 (557)
T ss_dssp CCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEE
Confidence 36789999997 47999999999999999998854
No 123
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=59.00 E-value=5.9 Score=33.02 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=19.7
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhcCCCe
Q 017969 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 44 ~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (363)
.+|+|||. .||||++.+|+. .|..+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~----lg~~~ 29 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD----LGVPL 29 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT----TTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHH----CCCcc
Confidence 47999996 589999999876 36554
No 124
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=58.90 E-value=5.6 Score=32.45 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.1
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHH
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
++|.|+| ..||||++.+|+.-|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999 5899999999988763
No 125
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=58.72 E-value=5.3 Score=32.15 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=19.6
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHH
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
..+|+|+|. .||||+..+|+..|.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 357999995 589999999988774
No 126
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=58.67 E-value=11 Score=36.78 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=28.6
Q ss_pred CcEEEEeC----CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 43 IKILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 43 ~~vI~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
.|.|-||| +-||+-|++-|..+|+.+|+++..
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~ 38 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTA 38 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEE
Confidence 57899999 569999999999999999999853
No 127
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=58.31 E-value=11 Score=32.42 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=26.4
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+..++.++| -.||||++.-|+..|. .|.++.+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vv 47 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYV 47 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEE
Confidence 455677766 7899999999999999 88887543
No 128
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=58.16 E-value=7.7 Score=33.15 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=21.1
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
..-.||+|| -.||||++.+++. .|..+
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~----~g~~v 36 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA----RGASL 36 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH----TTCEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH----CCCcE
Confidence 456899999 5789999988765 46655
No 129
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=58.15 E-value=12 Score=32.44 Aligned_cols=30 Identities=33% Similarity=0.561 Sum_probs=26.3
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCC
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIE 71 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~ 71 (363)
+..+|.|.|- .||||.+..|..-|...|..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4568999994 68999999999999999987
No 130
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=58.15 E-value=12 Score=31.37 Aligned_cols=35 Identities=17% Similarity=-0.013 Sum_probs=25.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
+..+++|+|.| ||||+...+...+...+.++...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 55799999965 699999998876665554554433
No 131
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=57.97 E-value=6 Score=33.04 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=19.7
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
+..+|+|+| -.||||.+.+|...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 567999999 568999998887765
No 132
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=57.92 E-value=6.6 Score=37.51 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=27.2
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEee
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
..+|+|+| -.|||||+.-|+..|...|.++.+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 35788887 4689999999999999888888644
No 133
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=57.89 E-value=3.5 Score=34.51 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=22.1
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
+|+|.| -.||||.+..|..-|...|.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 566666 4699999999999998776554
No 134
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=56.88 E-value=8.5 Score=33.09 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=26.2
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeE
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~ 73 (363)
...+|.|.|- .||||.+.+|...|.. |..+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 5678999995 6799999999999988 76663
No 135
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=56.85 E-value=6.5 Score=35.01 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=18.4
Q ss_pred CCcEEEEeCC--CChHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQ 63 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~ 63 (363)
...+|+|||. .||||++.+|+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999994 699999999984
No 136
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=56.42 E-value=9.3 Score=31.75 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL 65 (363)
+..+|+|+|-+ ||||++.+|+..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999965 6999999999887
No 137
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=56.24 E-value=9.4 Score=30.74 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.3
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL 65 (363)
+..+|+|+|. .||||+..+|+..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4578999995 68999999998876
No 138
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=56.09 E-value=7.4 Score=31.17 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=19.1
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHH
Q 017969 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 44 ~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
++|.|+|. .||||.+.+|+.-|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46889994 799999999988773
No 139
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=55.87 E-value=7.3 Score=32.66 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.0
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 41 ~~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
.+..+++|.|-| ||||+..+|..++.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 367799999976 89999999999885
No 140
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=55.20 E-value=8.7 Score=32.30 Aligned_cols=22 Identities=41% Similarity=0.456 Sum_probs=18.3
Q ss_pred CCcEEEEeCC--CChHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQ 63 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~ 63 (363)
+..+|+|+|. .||||.+.+|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 3468999995 699999999876
No 141
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=54.98 E-value=9.1 Score=31.17 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=18.8
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL 65 (363)
..+|.|+|. .||||.+..|+.-|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999994 68999999888765
No 142
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=54.98 E-value=9.1 Score=31.47 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=18.4
Q ss_pred EEEEeCC--CChHHHHHHHHHHHH
Q 017969 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 45 vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
.|+|+|. .||||.+..|+.-|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 5788884 689999999998875
No 143
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=54.87 E-value=9.3 Score=31.52 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=20.3
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
+...|.|+| -.||||.+.+|+.-|
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456899999 579999999998877
No 144
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=54.79 E-value=7.5 Score=32.46 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=19.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+.+.++|.|-| ||||+..+|...+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 34678888865 89999999988774
No 145
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=54.69 E-value=8.6 Score=31.89 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.0
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL 65 (363)
..++|.|+|- .||||.+..|+..|
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999995 57999999998877
No 146
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=54.48 E-value=8.2 Score=31.39 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.3
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL 65 (363)
.++|+|+|. .||||.+.+|+.-|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999995 69999999998866
No 147
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=54.00 E-value=8.5 Score=31.89 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=19.8
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHH
Q 017969 41 RSIKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
.+.++|+|+| -.||||.+..|+.-|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3567899999 568999998887654
No 148
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=53.98 E-value=11 Score=31.31 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.2
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL 65 (363)
+.++|.++|. .||||++..|+..|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578999994 58999999999887
No 149
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=53.92 E-value=12 Score=32.35 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=25.8
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhc----CCCeE
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHL----GIEAF 73 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~----g~~~~ 73 (363)
+...|.|.|. .||||.+..|..-|... |.++.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~ 61 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVV 61 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeee
Confidence 5678999994 57999999999999988 87763
No 150
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=53.91 E-value=11 Score=34.78 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=28.0
Q ss_pred CcEEEEe--CCCChHHHHHHHHHHHH--hcCCCeEeecc
Q 017969 43 IKILAVT--GTNGKSTVVTFVGQMLN--HLGIEAFVGGN 77 (363)
Q Consensus 43 ~~vI~VT--GTnGKTTT~~~l~~iL~--~~g~~~~~~gn 77 (363)
.+++.++ |-.||||++..++..|. ..|.++.+...
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~ 56 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIST 56 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 4555555 57789999999999999 89999876554
No 151
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=53.78 E-value=9.7 Score=31.17 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=19.2
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQM 64 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~i 64 (363)
+.+.|++||. .||||++.+|+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999995 5799999998876
No 152
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=53.44 E-value=8.9 Score=31.46 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.0
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHH
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
.++|+|+| -.||||.+.+|+.-|.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999 4699999999988774
No 153
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=52.86 E-value=14 Score=34.25 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=22.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhc
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~ 68 (363)
+..+|+|+|.| |||||...+...+...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 34599999976 5999999998888764
No 154
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=52.60 E-value=11 Score=29.81 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=19.5
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhcCCCeE
Q 017969 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 44 ~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~ 73 (363)
++|.|+|. .||||.+..| +..|..+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 47889994 6899999888 55666553
No 155
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=52.49 E-value=11 Score=30.05 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=18.4
Q ss_pred EEEEeCC--CChHHHHHHHHHHHH
Q 017969 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 45 vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
.|.|+|. .||||.+.+|+.-|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 5888985 799999999988773
No 156
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=51.20 E-value=13 Score=31.83 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=20.0
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL 65 (363)
+..+|+|+|. .||||++.+|+..|
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5668999996 58999999988866
No 157
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=50.73 E-value=10 Score=30.71 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.0
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL 65 (363)
...|.++|. .||||.+.+|+.-|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899994 68999999998766
No 158
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=50.25 E-value=11 Score=30.77 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
..++|+|+|-+ ||||+..+|...+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45799999965 79999999887654
No 159
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=50.20 E-value=21 Score=30.57 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=21.8
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEe
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
+..++.|||. .||||...-+..-+..+|.++.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli 45 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLV 45 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 5679999998 55665555555555557777644
No 160
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=50.14 E-value=10 Score=34.45 Aligned_cols=28 Identities=21% Similarity=0.579 Sum_probs=24.7
Q ss_pred CCcEEEE----eCCCChHHHHHHHHHHHHhcC
Q 017969 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLG 69 (363)
Q Consensus 42 ~~~vI~V----TGTnGKTTT~~~l~~iL~~~g 69 (363)
+.|+|.| .|-.|||-++.+|...|+..+
T Consensus 35 ~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~~ 66 (315)
T 4ehx_A 35 PVPVISVGNLSVGGSGKTSFVMYLADLLKDKR 66 (315)
T ss_dssp SSCEEEEEESBSSCCSHHHHHHHHHHHTTTSC
T ss_pred CCCEEEECCEEeCCCChHHHHHHHHHHHhhcC
Confidence 5688988 799999999999999998664
No 161
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=49.88 E-value=15 Score=34.11 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=23.1
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHHhc
Q 017969 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (363)
Q Consensus 41 ~~~~vI~VTGTn--GKTTT~~~l~~iL~~~ 68 (363)
.+..+|+|+|.| ||||+...|...+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 356799999965 6999999999988764
No 162
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=49.88 E-value=7.6 Score=31.43 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=16.4
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
+..+|.|+| -.||||.+..|+.-|.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999 4789999999877653
No 163
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=49.78 E-value=20 Score=35.36 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=27.0
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
..+++.++| -.||||++..++..|.+.|.++.+
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLl 41 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLL 41 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEE
Confidence 345666665 689999999999999999998864
No 164
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=48.88 E-value=12 Score=32.65 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=19.9
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL 65 (363)
+..+|+|+|- .||||+..+|+.-|
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 5679999995 47999999988666
No 165
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=48.70 E-value=14 Score=29.95 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=19.4
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHH
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
.+.|.++| -.||||++..|+.-|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46788888 579999999998877
No 166
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=48.64 E-value=21 Score=31.62 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=25.7
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHHhc-CCCeE
Q 017969 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL-GIEAF 73 (363)
Q Consensus 41 ~~~~vI~VTGTn--GKTTT~~~l~~iL~~~-g~~~~ 73 (363)
.+..+++|+|-| ||||....|+..+... |.++.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~ 68 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG 68 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 367799999965 8999999998888754 64553
No 167
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=46.76 E-value=14 Score=30.03 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=19.8
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
...+|.|+| -.||||.+..|+.-|
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 456888998 579999999998876
No 168
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=46.54 E-value=22 Score=29.21 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=18.7
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhcCCCeE
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~ 73 (363)
.+++.+||. .||||...-+..-+...|.++.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~ 35 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVA 35 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 468889998 4566665333333445666653
No 169
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=46.26 E-value=16 Score=37.98 Aligned_cols=34 Identities=12% Similarity=-0.022 Sum_probs=28.9
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHhc-----CCCeEee
Q 017969 42 SIKILAVTGT---NGKSTVVTFVGQMLNHL-----GIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~-----g~~~~~~ 75 (363)
..+.|-|+|| .|||+++.-|..+|+.. |.++..+
T Consensus 33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~f 74 (831)
T 4a0g_A 33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYL 74 (831)
T ss_dssp SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEE
Confidence 4578999998 69999999999999999 8887543
No 170
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=46.12 E-value=40 Score=27.05 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=24.7
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHH-hcCCCe
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLN-HLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~-~~g~~~ 72 (363)
+...+.+.|. .||||++..+...+. ..|..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~ 70 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG 70 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 4578999995 579999999999987 666554
No 171
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=45.89 E-value=13 Score=29.92 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=19.2
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHH
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
++|.++| -.||||++..|+.-|.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5788998 4899999999888774
No 172
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=45.83 E-value=7.6 Score=36.35 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=24.1
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEeecc
Q 017969 50 GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (363)
Q Consensus 50 GTnGKTTT~~~l~~iL~~~g~~~~~~gn 77 (363)
|-.||||++..++..|...|.++.+...
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 4578999999999999999999876655
No 173
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=45.55 E-value=15 Score=29.64 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.5
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHH
Q 017969 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (363)
Q Consensus 41 ~~~~vI~VTGTn--GKTTT~~~l~~iL 65 (363)
++..++++.|-| ||||...+|..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 366799999976 6999999999988
No 174
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=45.33 E-value=19 Score=29.66 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=19.8
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL 65 (363)
...+|.|+|. .||||.+..|+.-|
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999994 78999999998877
No 175
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=45.28 E-value=24 Score=34.00 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=29.3
Q ss_pred CCCcEEEEeCC------CChHHHHHHHHHHHHhcCCCeE
Q 017969 41 RSIKILAVTGT------NGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 41 ~~~~vI~VTGT------nGKTTT~~~l~~iL~~~g~~~~ 73 (363)
++.+.|.||+- -|||||+-=|.+.|...|.++.
T Consensus 41 ~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~ 79 (543)
T 3do6_A 41 EDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSI 79 (543)
T ss_dssp CCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeE
Confidence 36789999997 5999999999999999998874
No 176
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=45.08 E-value=14 Score=32.23 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=16.9
Q ss_pred cEEEEeC--CCChHHHHHHHHHH
Q 017969 44 KILAVTG--TNGKSTVVTFVGQM 64 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~i 64 (363)
.+|++|| -.||||++.++..-
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 4899999 57899988887553
No 177
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=45.08 E-value=17 Score=30.46 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=20.2
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
+...|.++| -.||||.+..|+.-|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456788888 4689999999988773
No 178
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=44.09 E-value=20 Score=31.02 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=23.4
Q ss_pred EEEeCCCChHHHHHHHHHHHHhcCCCeE
Q 017969 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 46 I~VTGTnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
+.=.|-.||||++.-+++-|...|+++.
T Consensus 11 ~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 11 LGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 4445688999999999999999998874
No 179
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=44.08 E-value=17 Score=31.23 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=20.9
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
+..+|+|+| -.||||++..|+.-|.
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 456999999 5789999999998773
No 180
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=43.66 E-value=15 Score=29.62 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=18.5
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHH
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
+.|.|+| -.||||++..|+.-|.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4688888 4689999999988763
No 181
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=43.49 E-value=17 Score=29.33 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=19.5
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
+.+.|.|+| -.||||.+..|+.-|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456788999 468999999998776
No 182
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=42.55 E-value=20 Score=35.44 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=25.3
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcC-CCe
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLG-IEA 72 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g-~~~ 72 (363)
+..+|.+|| ..||||++..|+..|...| ..+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~ 428 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSV 428 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCE
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceE
Confidence 456899998 4679999999999999876 544
No 183
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=42.33 E-value=24 Score=35.42 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=27.2
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
+..+|.++| -.||||.+..|+.-|.+.|..+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v 84 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 84 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 556899999 58999999999999988887653
No 184
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=41.41 E-value=38 Score=28.88 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=23.1
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHHHH--hcCCCeEe
Q 017969 41 RSIKILAVTGTNGKSTVVTFVGQMLN--HLGIEAFV 74 (363)
Q Consensus 41 ~~~~vI~VTGTnGKTTT~~~l~~iL~--~~g~~~~~ 74 (363)
++.++..+||+-||+-|+.+|..+.+ .+|.++..
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli 61 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIV 61 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 35678999999666666666666555 56777744
No 185
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=40.72 E-value=23 Score=34.79 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=25.7
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCe
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (363)
...+|.+||. .||||++..|+.-|...|..+
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~ 403 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKV 403 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 3568999885 679999999999998887655
No 186
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=40.54 E-value=15 Score=29.66 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=20.1
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 44 KILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 44 ~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
.+.+|+|-| ||||+...|..+|..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 388999977 599999999988863
No 187
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=40.49 E-value=17 Score=29.53 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=18.3
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQM 64 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~i 64 (363)
+..+|+|.|- .||||+..+|+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 5678999995 5899998888664
No 188
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=40.42 E-value=33 Score=32.47 Aligned_cols=27 Identities=41% Similarity=0.327 Sum_probs=21.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhc
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~ 68 (363)
+..+|+|+|-| |||||...+...+...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 55699999965 7999999888887644
No 189
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=40.15 E-value=10 Score=39.21 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=31.7
Q ss_pred CCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEeCCC--ChHHHHHHHHHHH
Q 017969 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQML 65 (363)
Q Consensus 13 ~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGTn--GKTTT~~~l~~iL 65 (363)
-+||.+.... .+..++..+.+- .+..+++|||-| ||||...++.-+.
T Consensus 583 ~rHP~le~~~-~~~~vlndisl~-----~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 583 GRHPVVEQVL-NEPFIANPLNLS-----PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp ECCTTHHHHC-SSCCCCEEEEEC-----SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccEEEccC-CCceeeeccccc-----CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 4688886544 233444444322 256799999977 7999999988764
No 190
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=39.42 E-value=21 Score=29.70 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=17.0
Q ss_pred EEEEeC--CCChHHHHHHHHHHH
Q 017969 45 ILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL 65 (363)
.|+|+| -.||||.+.+|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 477888 578999999987665
No 191
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=39.26 E-value=19 Score=31.38 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.1
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHH
Q 017969 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 43 ~~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
.++|+|+|. .||||+..+|+..|.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 568999994 589999999998773
No 192
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=37.76 E-value=35 Score=33.55 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=26.8
Q ss_pred cEEEEe-C---CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVT-G---TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VT-G---TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
+.|-|| | +-||+.+++-|..+|+..|+++..
T Consensus 4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~ 38 (545)
T 1s1m_A 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTI 38 (545)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeee
Confidence 567788 5 579999999999999999999853
No 193
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=37.56 E-value=22 Score=28.31 Aligned_cols=20 Identities=35% Similarity=0.300 Sum_probs=16.4
Q ss_pred cEEEEeC--CCChHHHHHHHHH
Q 017969 44 KILAVTG--TNGKSTVVTFVGQ 63 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~ 63 (363)
++|.|+| -.||||.+..|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4788888 4789999988876
No 194
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=37.52 E-value=76 Score=27.86 Aligned_cols=46 Identities=7% Similarity=0.094 Sum_probs=34.5
Q ss_pred CCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCe
Q 017969 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 25 ~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~ 72 (363)
.+|+++-++-..+.. ...+.|||-||.| |....+....|++.|..+
T Consensus 94 ~iPvigiiep~~~~~-~~~~~IGVLaT~~-Ti~s~~y~~~l~~~~~~~ 139 (268)
T 3out_A 94 AIPVIDVITAGVSLV-DNLNTVGVIATPA-TINSNAYALQIHKKNPNI 139 (268)
T ss_dssp TSCEEEHHHHHHHTT-TTCSEEEEEECHH-HHHHTHHHHHHHHHCTTS
T ss_pred CCCEEeccHHHHHHh-ccCCeEEEEecCc-ccccHHHHHHHHHhCCCC
Confidence 699999777555543 4678999999997 555568888888877544
No 195
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=37.44 E-value=20 Score=30.32 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=27.5
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEeecccchhhh
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~gnig~p~~ 83 (363)
+..+|+||| -.||+|++..+...+...+..+ =++|.|+-
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~v---v~msD~iK 50 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAV---LRLSGPLK 50 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEE---ECTHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceE---EEccHHHH
Confidence 557999999 7899999999987664322222 34666665
No 196
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=37.19 E-value=36 Score=33.49 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=27.1
Q ss_pred cEEEEe-C---CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 44 KILAVT-G---TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 44 ~vI~VT-G---TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
+.|-|| | +-||+.+++-|..+|+..|+++..
T Consensus 13 ~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~ 47 (550)
T 1vco_A 13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTA 47 (550)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeE
Confidence 678888 5 579999999999999999999853
No 197
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=36.88 E-value=23 Score=30.18 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|...+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 67899999976 79999999888764
No 198
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=36.83 E-value=27 Score=29.85 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=19.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL 65 (363)
+..+|+|.|-| ||||...+|+.-|
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999965 6999999888666
No 199
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=36.55 E-value=48 Score=30.05 Aligned_cols=58 Identities=9% Similarity=0.062 Sum_probs=37.9
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeH-------HHHH----HhhCC-----------CCCcEEEEeCCC--ChHHHHH
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMSE-------LDFA----AQVIP-----------RSIKILAVTGTN--GKSTVVT 59 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~-------~~~~----~~~~~-----------~~~~vI~VTGTn--GKTTT~~ 59 (363)
.+|++.+..+....+..|.+.++|+++- +..+ ...+. -...-|.++|.. ||||++.
T Consensus 83 ~IIltrg~~~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~ 162 (314)
T 1ko7_A 83 AIIVTRDLEPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETAL 162 (314)
T ss_dssp CEEECTTCCCCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHH
Confidence 3678888888888889999999999852 1111 11110 124678999954 6877665
Q ss_pred HH
Q 017969 60 FV 61 (363)
Q Consensus 60 ~l 61 (363)
.+
T Consensus 163 ~l 164 (314)
T 1ko7_A 163 EL 164 (314)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 200
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=36.44 E-value=28 Score=29.95 Aligned_cols=24 Identities=17% Similarity=0.057 Sum_probs=19.8
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL 65 (363)
+...|.|+|. .||||.+.+|..-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5568999995 68999999998665
No 201
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=36.44 E-value=18 Score=30.95 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=19.9
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHH
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
...|.|.| ..||||.+..|+.-|.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45788888 5799999999998875
No 202
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=35.81 E-value=19 Score=30.05 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=18.3
Q ss_pred cEEEEeC--CCChHHHHHHHHHHH
Q 017969 44 KILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
.+|+|+| ..||||.+.+|+..|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 4799999 469999999887765
No 203
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=35.70 E-value=45 Score=27.90 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=23.3
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
+.|.|-| -.||||.+.+|..-|. .|.++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~ 33 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVI 33 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEE
Confidence 5788888 6799999999999996 466653
No 204
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=34.78 E-value=52 Score=25.80 Aligned_cols=31 Identities=23% Similarity=0.144 Sum_probs=24.7
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCe
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (363)
+...+++.|. .||||+..++...+...|.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~ 67 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNA 67 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcE
Confidence 3468899995 489999999999998766544
No 205
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=34.70 E-value=23 Score=31.20 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 66799999988 79999888876654
No 206
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=34.42 E-value=39 Score=27.95 Aligned_cols=33 Identities=9% Similarity=0.133 Sum_probs=22.3
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEee
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+.+.|+|+|. .||||+..-+..-+... .+++..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i 63 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAM 63 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEE
Confidence 5678888884 79999887666655444 445433
No 207
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=34.32 E-value=31 Score=29.80 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=19.8
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
...+|+|+|. .||||++.+|+.-|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3468999994 689999999988773
No 208
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=34.28 E-value=49 Score=27.80 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=18.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQ 63 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~ 63 (363)
+..+++|.|-| ||||+..++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 56799999966 79999998873
No 209
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=34.05 E-value=7.4 Score=29.27 Aligned_cols=12 Identities=33% Similarity=0.586 Sum_probs=8.2
Q ss_pred eeeeeeeeccCC
Q 017969 352 SFFLFSFCVDHH 363 (363)
Q Consensus 352 ~~~~~~~~~~~~ 363 (363)
+=|+|-+|+++|
T Consensus 88 ~DFSy~KCv~~~ 99 (104)
T 2k0m_A 88 ERFSYKKCVLEH 99 (104)
T ss_dssp EECCGGGSSCCT
T ss_pred eeeeHHHHhhhh
Confidence 456777777765
No 210
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=34.00 E-value=23 Score=35.18 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=18.8
Q ss_pred CcEEEEeCCCChHHH-HHHHHHHHHhcCC
Q 017969 43 IKILAVTGTNGKSTV-VTFVGQMLNHLGI 70 (363)
Q Consensus 43 ~~vI~VTGTnGKTTT-~~~l~~iL~~~g~ 70 (363)
.-++|-.|| |||+| +.-+.+++...|.
T Consensus 25 ~lV~a~aGs-GKT~~l~~ri~~l~~~~~~ 52 (647)
T 3lfu_A 25 LLVLAGAGS-GKTRVLVHRIAWLMSVENC 52 (647)
T ss_dssp EEEEECTTS-CHHHHHHHHHHHHHHTSCC
T ss_pred EEEEECCCC-CHHHHHHHHHHHHHHhCCC
Confidence 345666666 99998 4568888876553
No 211
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=32.71 E-value=28 Score=28.97 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=18.3
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
.|+|+| -.||||.+.+|+.-+ |..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~~~ 28 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY---GIPH 28 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---SCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcE
Confidence 477888 569999999887544 5444
No 212
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=32.37 E-value=17 Score=32.95 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=28.5
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCeEe
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
...+|.+-| +.||||+...|..-|...|.++..
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~ 119 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVA 119 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEE
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEE
Confidence 456888888 899999999999999999987754
No 213
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=32.27 E-value=26 Score=30.68 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 66799999988 79999888877664
No 214
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=32.20 E-value=31 Score=30.25 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=19.9
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL 65 (363)
+..+++|.|-| ||||...+|.-++
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 66799999977 7999888887764
No 215
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=31.93 E-value=34 Score=28.80 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=20.9
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+++|.|-| ||||...+|..+ ..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p 47 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-AL 47 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CC
Confidence 45799999987 699999999888 53
No 216
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=31.61 E-value=24 Score=30.11 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|.-++.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999987 79998888876654
No 217
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=31.58 E-value=25 Score=29.68 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=18.3
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
+...|.|+| -.||||.+..|+.-|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345788888 479999999988755
No 218
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=31.50 E-value=27 Score=30.65 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 66799999987 79998888776654
No 219
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=31.22 E-value=18 Score=31.29 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=20.8
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 66799999977 69999888877765
No 220
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=30.86 E-value=46 Score=29.72 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=22.1
Q ss_pred HHHHHhhCCCCCcEEEEeCCCC--hHHHHHHHHHHHH
Q 017969 32 LDFAAQVIPRSIKILAVTGTNG--KSTVVTFVGQMLN 66 (363)
Q Consensus 32 ~~~~~~~~~~~~~vI~VTGTnG--KTTT~~~l~~iL~ 66 (363)
++.+.... ...++++.|.|| |||+..+|. .+.
T Consensus 156 i~~L~~~l--~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 156 IDELVDYL--EGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHHHHHHT--TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HHHHHhhc--cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 34444444 456889999887 999888887 443
No 221
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=30.73 E-value=31 Score=27.91 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=16.4
Q ss_pred cEEEEeCC--CChHHHHHHHHH
Q 017969 44 KILAVTGT--NGKSTVVTFVGQ 63 (363)
Q Consensus 44 ~vI~VTGT--nGKTTT~~~l~~ 63 (363)
.+|+++|. .||||+..+|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 47889996 489999999875
No 222
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=30.68 E-value=29 Score=30.32 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|.-++.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 66799999977 79998888876654
No 223
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=30.60 E-value=26 Score=29.00 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=19.3
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
+.++|.|+| -.||||.+..|...+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 556788888 4689999998877663
No 224
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=30.40 E-value=33 Score=29.72 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQM 64 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~i 64 (363)
+..+++|.|-| ||||...+|..+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56799999987 799988888765
No 225
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=30.08 E-value=29 Score=28.92 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.0
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHH
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
.++|.|+| -.||||+...|+.-|
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 46999999 689999999998877
No 226
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=29.65 E-value=45 Score=28.18 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=20.3
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
....|.++| -.||||.+.+|+.-|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445788888 4799999999998874
No 227
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=29.35 E-value=19 Score=31.76 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=21.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+++|.|-| ||||...+|..++..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 56799999977 599998888877653
No 228
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=29.30 E-value=34 Score=28.58 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=18.7
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHH
Q 017969 43 IKILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 43 ~~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
...|.++| -.||||.+.+|+.-|
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34677888 479999999999877
No 229
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=29.16 E-value=35 Score=33.20 Aligned_cols=26 Identities=4% Similarity=-0.083 Sum_probs=22.8
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~ 67 (363)
+..+|.+|| ..||||++..|+.-|..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 456899999 46999999999999986
No 230
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=29.05 E-value=30 Score=29.77 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999987 69998888776654
No 231
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=28.97 E-value=37 Score=29.28 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=20.5
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 41 ~~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
.+ .+++|.|-| ||||...+|..++.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36 899999987 79999888877764
No 232
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=28.88 E-value=31 Score=30.07 Aligned_cols=25 Identities=40% Similarity=0.486 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999988 79998888776654
No 233
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=28.54 E-value=31 Score=30.05 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999987 79999888876664
No 234
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=28.50 E-value=30 Score=31.13 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhcCCCeE
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~~~ 73 (363)
+.++++|||-+ ||||....|.... .|.+++
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~a 34 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIA 34 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC--CCCCEE
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc--CCCcEE
Confidence 56899999955 6888777665543 344443
No 235
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=28.45 E-value=37 Score=29.90 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=20.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|.-++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 66799999977 69998888877664
No 236
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=28.26 E-value=32 Score=31.58 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=19.6
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHH
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
++|+|+| ..||||.+..|+.-|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999 4699999999988775
No 237
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=28.11 E-value=58 Score=27.70 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCceeeHHHHHHhhCC--CCCcEEEEeCC--CChHHHHHHHHHHHH
Q 017969 16 TGLACLLQSGKRVMSELDFAAQVIP--RSIKILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 16 p~l~~a~~~~~~~l~~~~~~~~~~~--~~~~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
+.++..+-+++..+..++.+..... .+...+.+.|. .||||++.-|+..|.
T Consensus 29 ~I~~~l~yq~~~~~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 29 PIVQFLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCcCHHHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344445556666555554443331 12237899995 899999988888874
No 238
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=27.99 E-value=42 Score=28.18 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=17.2
Q ss_pred EEEEeC--CCChHHHHHHHHHHH
Q 017969 45 ILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL 65 (363)
.|.|+| -.||||.+.+|+.-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 467777 469999999998877
No 239
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=27.94 E-value=35 Score=28.49 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=17.3
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHH
Q 017969 44 KILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
..|.|.| -.||||.+..|+.-|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4555666 3599999999998775
No 240
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=27.71 E-value=39 Score=28.98 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=18.9
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL 65 (363)
+..+++|.|-| ||||...+|..++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 66799999976 7888888776554
No 241
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=27.63 E-value=32 Score=29.66 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=20.2
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
...+|.++| -.||||++..|...|.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999 5689999999988764
No 242
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=27.23 E-value=40 Score=29.42 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 56799999977 79999888877653
No 243
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=27.12 E-value=34 Score=30.28 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=20.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|.-++.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 56799999988 69999888876664
No 244
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=26.74 E-value=68 Score=26.05 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=24.5
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhcCCCeE
Q 017969 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 44 ~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~ 73 (363)
+.+.++|. .|||+.+..++.-+...|.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~ 86 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSL 86 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 67889985 5899999999998887776653
No 245
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=26.72 E-value=97 Score=30.47 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=27.9
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhcCCCeEeec
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (363)
..+++.|+|- .|||||...+...|...|.++....
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 3468888884 5899999999999999998875443
No 246
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=26.44 E-value=36 Score=29.85 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.2
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 017969 43 IKILAVTGTN--GKSTVVTFVGQML 65 (363)
Q Consensus 43 ~~vI~VTGTn--GKTTT~~~l~~iL 65 (363)
..+++|.|.| ||||...+|..++
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5799999988 7999988887665
No 247
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=26.27 E-value=35 Score=28.93 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=19.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|.-++.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56789999977 79998888766654
No 248
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=26.25 E-value=43 Score=32.36 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.0
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHHHhc
Q 017969 44 KILAVTGTN--GKSTVVTFVGQMLNHL 68 (363)
Q Consensus 44 ~vI~VTGTn--GKTTT~~~l~~iL~~~ 68 (363)
.+++|.|-| ||||+..+|..++...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~ 56 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPD 56 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 799999987 7999999999998753
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=26.03 E-value=35 Score=28.73 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.3
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL 65 (363)
+..+++|.|- .||||+..+|...+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5678999995 47999999998877
No 250
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=25.89 E-value=38 Score=31.08 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=19.5
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 43 ~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
...++|.|.| ||||...+|..++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999965 59999999888865
No 251
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=25.86 E-value=29 Score=36.48 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=31.0
Q ss_pred CCcHHHHHHHhc-CCceeeHHHHHHhhCCCCCcEEEEeCCC--ChHHHHHHHHHH
Q 017969 13 LKATGLACLLQS-GKRVMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQM 64 (363)
Q Consensus 13 ~~~p~l~~a~~~-~~~~l~~~~~~~~~~~~~~~vI~VTGTn--GKTTT~~~l~~i 64 (363)
-.||.+...... +..+..++.+-. .+..+++|||-| ||||.-.++..+
T Consensus 646 ~rHP~le~~~~~~~~~V~ndvsl~~----~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 646 GRHPVIDVLLGEQDQYVPNNTDLSE----DSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp ECCHHHHHHTCSCSSSCCEEEEECT----TSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhccCCceecccccccC----CCCeEEEEECCCCCchHHHHHHHHHH
Confidence 468888766543 334444443211 246799999988 589988887644
No 252
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=25.76 E-value=38 Score=29.40 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 56799999987 69998888776654
No 253
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=25.52 E-value=43 Score=30.92 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=20.5
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhcCCCeEe
Q 017969 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (363)
Q Consensus 45 vI~VTGT--nGKTTT~~~l~~iL~~~g~~~~~ 74 (363)
-+.|.|+ .||||+..++...+...|.++..
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 3445553 58999988887777777766644
No 254
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=25.50 E-value=50 Score=28.51 Aligned_cols=22 Identities=18% Similarity=0.284 Sum_probs=17.3
Q ss_pred cEEEEeC--CCChHHHHHHHHHHH
Q 017969 44 KILAVTG--TNGKSTVVTFVGQML 65 (363)
Q Consensus 44 ~vI~VTG--TnGKTTT~~~l~~iL 65 (363)
++|.|+| -.||||.+..|+.-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 4678888 468999999887765
No 255
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=25.41 E-value=44 Score=27.74 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=19.0
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhcCCCeE
Q 017969 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 45 vI~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
.|.|+| -.||||.+.+|+.-| |..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---g~~~i 29 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY---GIPQI 29 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---CCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEE
Confidence 366777 469999999998876 45443
No 256
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=25.30 E-value=31 Score=33.03 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=23.5
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHHhc
Q 017969 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (363)
Q Consensus 41 ~~~~vI~VTGTn--GKTTT~~~l~~iL~~~ 68 (363)
.+.++++|.|-| ||||...+|..++...
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~ 165 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKF 165 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCccccc
Confidence 367899999965 7999999999988753
No 257
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=24.95 E-value=27 Score=32.21 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=19.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
+..+|+|+|-+ ||||+..+|...+..
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45688899855 799998888766543
No 258
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=24.74 E-value=46 Score=28.29 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=19.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 56799999976 79998887765553
No 259
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=23.99 E-value=43 Score=29.82 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=19.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|..++.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 56799999987 69998887765543
No 260
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=23.85 E-value=48 Score=28.62 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=20.0
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||...+|.-++.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999976 69998888876654
No 261
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=23.70 E-value=62 Score=26.82 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=21.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
...+..|+|-| ||||....|..+|..
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 34688899976 899999999999875
No 262
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=23.41 E-value=1.1e+02 Score=25.20 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=25.2
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhcCCCe
Q 017969 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (363)
..+.+.|+| -.||||++..++.-+...+..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~ 83 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRS 83 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 456888999 4689999999999988777655
No 263
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=23.28 E-value=61 Score=27.06 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=18.8
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL 65 (363)
+.++|+|.|-+ ||||....|...+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 56789999966 6999888776654
No 264
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=23.25 E-value=34 Score=29.00 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=18.9
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHH
Q 017969 41 RSIKILAVTGTN--GKSTVVTFVGQM 64 (363)
Q Consensus 41 ~~~~vI~VTGTn--GKTTT~~~l~~i 64 (363)
++..+|+|.|-+ ||||...+|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 356799999965 799988887765
No 265
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=23.07 E-value=82 Score=28.43 Aligned_cols=27 Identities=7% Similarity=-0.036 Sum_probs=23.6
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceee
Q 017969 4 LWLFLLEFQLKATGLACLLQSGKRVMS 30 (363)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~ 30 (363)
.+|++...++....++.|.+.++|+++
T Consensus 86 ~IIvtrg~~pp~elie~A~e~~ipLl~ 112 (312)
T 1knx_A 86 AIILTKSFTDPTVLLQVNQTYQVPILK 112 (312)
T ss_dssp CEEEETTTCCCHHHHHHGGGTCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCEEEE
Confidence 368888899988899999999999986
No 266
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=23.00 E-value=58 Score=32.02 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=25.6
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhcCCCeEee
Q 017969 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (363)
Q Consensus 44 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (363)
+.|.|+ |-.||||++.-++..|...|.++...
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllv 361 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLT 361 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEE
Confidence 455554 46799999999999999999988654
No 267
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=22.87 E-value=72 Score=28.65 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.7
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHH
Q 017969 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (363)
Q Consensus 41 ~~~~vI~VTGTn--GKTTT~~~l~~iL 65 (363)
.+..+++|.|-| ||||...+|..++
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 367899999954 6999999999999
No 268
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=22.82 E-value=56 Score=30.18 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||+..+|+-++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 56799999977 89999999988875
No 269
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=22.60 E-value=34 Score=33.33 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=19.8
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~ 67 (363)
....|+|+|- .|||||..+|...+..
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 3456899995 5899999888777753
No 270
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=22.51 E-value=65 Score=27.28 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=21.9
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHh
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLNH 67 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~~ 67 (363)
+...|.+.|. .||||.+..|..-|..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4678888884 5799999999999976
No 271
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=22.42 E-value=57 Score=30.10 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=21.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||+..+|+-++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 56799999977 79999999988875
No 272
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=22.38 E-value=19 Score=31.29 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=20.9
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHH
Q 017969 41 RSIKILAVTG--TNGKSTVVTFVGQMLN 66 (363)
Q Consensus 41 ~~~~vI~VTG--TnGKTTT~~~l~~iL~ 66 (363)
++...|.|.| ..||||.+..|+.-|.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567999999 6789999998887764
No 273
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=22.38 E-value=1.1e+02 Score=26.12 Aligned_cols=32 Identities=13% Similarity=0.016 Sum_probs=20.6
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHH--hcCCCeE
Q 017969 42 SIKILAVTGTNGKSTVVTFVGQMLN--HLGIEAF 73 (363)
Q Consensus 42 ~~~vI~VTGTnGKTTT~~~l~~iL~--~~g~~~~ 73 (363)
...+..|||+.|++-|+.+|..+.+ .+|.++.
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvl 60 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVV 60 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceE
Confidence 5679999998555555555555443 4566653
No 274
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=21.82 E-value=76 Score=24.80 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=20.2
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHh
Q 017969 43 IKILAVTGTN--GKSTVVTFVGQMLNH 67 (363)
Q Consensus 43 ~~vI~VTGTn--GKTTT~~~l~~iL~~ 67 (363)
..+..|+|-| ||||....|..+|..
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4578899966 899999999888853
No 275
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=21.78 E-value=70 Score=28.12 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=33.6
Q ss_pred CCceeeHHHHHHhhCCCCCcEEEEeCCCChHHHHHHHHHHHHhcCCCeE
Q 017969 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (363)
Q Consensus 25 ~~~~l~~~~~~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~ 73 (363)
++|+++-++...+......+.|+|-||.| |....+....|.+.|..+.
T Consensus 122 ~iPvigiiea~~~aa~~~~~rVgVLaT~~-T~~s~~y~~~l~~~g~~~~ 169 (268)
T 3s81_A 122 KARMISILDATLGDIPPSARHVGLLATNA-TLATGLYQKKALARGLTLI 169 (268)
T ss_dssp SSEEECHHHHHHHTSCTTCCEEEEECCHH-HHHTTTTHHHHHHHTCEEE
T ss_pred CCCEEcccHHHHHHHHhcCCcEEEEechH-HhhHHHHHHHHHHcCCceE
Confidence 78999987766554323567899999987 4444566777777776553
No 276
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=21.47 E-value=91 Score=25.67 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=17.4
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGT--nGKTTT~~~l~~iL~ 66 (363)
+.+.|.|+|. .||||+..-+..-+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4678888884 689998765554443
No 277
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=21.03 E-value=51 Score=30.32 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||+..+|+-++.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 56799999988 79999999988775
No 278
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=20.36 E-value=53 Score=28.96 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=15.8
Q ss_pred CCcEEEEeC--CCChHHHHHHH
Q 017969 42 SIKILAVTG--TNGKSTVVTFV 61 (363)
Q Consensus 42 ~~~vI~VTG--TnGKTTT~~~l 61 (363)
+.+.|+|.| +.||||+...|
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l 44 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENI 44 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHH
Confidence 567899999 67999976544
No 279
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=20.34 E-value=55 Score=30.06 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||+..+|+-++.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 56799999988 69999999887765
No 280
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=20.24 E-value=68 Score=29.73 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=21.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017969 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (363)
Q Consensus 42 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 66 (363)
+..+++|.|-| ||||+..+|+-++.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 56799999976 79999999988875
Done!