Query 017971
Match_columns 363
No_of_seqs 172 out of 2894
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:02:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 1.9E-44 4.2E-49 332.5 24.8 316 40-361 22-347 (493)
2 PTZ00102 disulphide isomerase; 100.0 4.4E-38 9.6E-43 304.4 31.6 299 42-361 31-339 (477)
3 TIGR01130 ER_PDI_fam protein d 100.0 2.7E-37 5.9E-42 297.9 31.0 311 44-361 2-328 (462)
4 KOG4277 Uncharacterized conser 100.0 4E-38 8.6E-43 266.4 18.7 290 43-347 28-335 (468)
5 KOG0912 Thiol-disulfide isomer 100.0 5E-35 1.1E-39 248.0 20.3 303 48-358 1-317 (375)
6 PF01216 Calsequestrin: Calseq 100.0 3.1E-29 6.8E-34 217.4 28.2 300 25-337 19-339 (383)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.9 4.5E-24 9.7E-29 163.2 12.6 104 39-145 5-113 (113)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 5.3E-23 1.2E-27 155.9 11.5 99 44-145 2-101 (101)
9 cd02996 PDI_a_ERp44 PDIa famil 99.9 1.4E-22 3.1E-27 155.4 12.7 103 43-145 1-108 (108)
10 cd03007 PDI_a_ERp29_N PDIa fam 99.9 2.2E-22 4.7E-27 152.7 10.1 98 44-148 2-115 (116)
11 PF00085 Thioredoxin: Thioredo 99.9 1.7E-21 3.7E-26 148.1 13.8 101 45-148 1-103 (103)
12 cd02994 PDI_a_TMX PDIa family, 99.9 1.7E-21 3.6E-26 147.7 12.7 101 43-147 1-101 (101)
13 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1.6E-21 3.4E-26 148.7 11.5 99 44-145 2-104 (104)
14 cd03065 PDI_b_Calsequestrin_N 99.9 3E-21 6.5E-26 148.5 12.6 110 39-149 5-119 (120)
15 PTZ00443 Thioredoxin domain-co 99.9 8E-21 1.7E-25 162.2 15.2 106 42-150 29-140 (224)
16 KOG0191 Thioredoxin/protein di 99.8 2.2E-20 4.9E-25 174.9 16.4 205 44-253 30-254 (383)
17 PF13848 Thioredoxin_6: Thiore 99.8 4.9E-20 1.1E-24 155.5 15.1 170 184-357 10-183 (184)
18 cd03005 PDI_a_ERp46 PDIa famil 99.8 3.4E-20 7.3E-25 140.8 12.1 100 45-145 2-102 (102)
19 cd03002 PDI_a_MPD1_like PDI fa 99.8 2.6E-20 5.7E-25 143.2 11.4 99 44-145 1-108 (109)
20 cd03001 PDI_a_P5 PDIa family, 99.8 9.2E-20 2E-24 138.6 12.3 99 44-145 1-102 (103)
21 KOG0910 Thioredoxin-like prote 99.8 6.2E-20 1.3E-24 142.7 11.3 105 43-150 43-149 (150)
22 COG3118 Thioredoxin domain-con 99.8 8E-20 1.7E-24 157.2 11.5 106 43-151 23-132 (304)
23 TIGR01126 pdi_dom protein disu 99.8 1.7E-19 3.8E-24 136.8 11.5 100 48-148 1-101 (102)
24 cd02963 TRX_DnaJ TRX domain, D 99.8 2.6E-19 5.5E-24 137.7 12.3 100 46-147 7-110 (111)
25 cd03000 PDI_a_TMX3 PDIa family 99.8 2.6E-19 5.6E-24 136.3 12.1 101 46-148 3-103 (104)
26 cd02993 PDI_a_APS_reductase PD 99.8 2.8E-19 6E-24 137.2 11.8 100 44-145 2-109 (109)
27 cd02962 TMX2 TMX2 family; comp 99.8 5.5E-19 1.2E-23 141.9 13.9 92 41-134 26-126 (152)
28 PRK10996 thioredoxin 2; Provis 99.8 1.2E-18 2.6E-23 139.4 15.0 106 40-148 32-138 (139)
29 cd02997 PDI_a_PDIR PDIa family 99.8 4.5E-19 9.7E-24 135.1 12.0 101 44-145 1-104 (104)
30 KOG1731 FAD-dependent sulfhydr 99.8 1.7E-19 3.8E-24 166.7 11.0 214 34-250 30-272 (606)
31 cd02999 PDI_a_ERp44_like PDIa 99.8 3.2E-19 7E-24 134.3 10.5 84 58-145 16-100 (100)
32 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 5.4E-19 1.2E-23 134.6 11.4 100 44-145 1-104 (104)
33 PRK09381 trxA thioredoxin; Pro 99.8 1.8E-18 4E-23 132.9 13.8 104 43-149 3-108 (109)
34 cd02956 ybbN ybbN protein fami 99.8 1.4E-18 3E-23 130.4 11.9 91 52-145 2-95 (96)
35 PHA02278 thioredoxin-like prot 99.8 1.7E-18 3.8E-23 130.2 12.0 92 50-144 4-100 (103)
36 cd02998 PDI_a_ERp38 PDIa famil 99.8 1.5E-18 3.3E-23 132.3 11.0 101 44-145 1-105 (105)
37 cd02948 TRX_NDPK TRX domain, T 99.8 7.8E-18 1.7E-22 127.5 12.6 96 48-147 5-101 (102)
38 cd02961 PDI_a_family Protein D 99.8 2.9E-18 6.3E-23 129.5 10.1 98 47-145 2-101 (101)
39 cd02992 PDI_a_QSOX PDIa family 99.8 8.9E-18 1.9E-22 129.6 12.1 99 43-141 1-108 (114)
40 cd02954 DIM1 Dim1 family; Dim1 99.8 7.7E-18 1.7E-22 127.5 10.3 84 50-136 2-88 (114)
41 TIGR01068 thioredoxin thioredo 99.7 4.2E-17 9.2E-22 123.3 12.3 98 48-148 1-100 (101)
42 TIGR02187 GlrX_arch Glutaredox 99.7 1.3E-16 2.8E-21 137.5 15.9 189 51-249 11-214 (215)
43 cd02965 HyaE HyaE family; HyaE 99.7 4.1E-17 8.8E-22 122.6 11.0 97 43-142 10-109 (111)
44 cd02985 TRX_CDSP32 TRX family, 99.7 6.4E-17 1.4E-21 122.7 12.3 94 49-147 2-101 (103)
45 cd02957 Phd_like Phosducin (Ph 99.7 7.9E-17 1.7E-21 124.4 12.2 88 42-134 3-94 (113)
46 PLN02309 5'-adenylylsulfate re 99.7 5.6E-17 1.2E-21 151.9 13.5 106 41-148 343-456 (457)
47 TIGR00424 APS_reduc 5'-adenyly 99.7 5.3E-17 1.1E-21 152.1 13.3 106 41-148 349-462 (463)
48 KOG0190 Protein disulfide isom 99.7 1.6E-17 3.4E-22 154.5 9.5 105 43-150 366-474 (493)
49 cd02989 Phd_like_TxnDC9 Phosdu 99.7 2E-16 4.4E-21 121.6 12.8 99 43-145 4-112 (113)
50 cd02984 TRX_PICOT TRX domain, 99.7 3.9E-16 8.4E-21 117.2 11.9 94 49-145 1-96 (97)
51 PTZ00102 disulphide isomerase; 99.7 3.8E-16 8.2E-21 151.4 13.8 112 41-153 355-469 (477)
52 cd02953 DsbDgamma DsbD gamma f 99.7 3.4E-16 7.4E-21 119.1 10.0 92 51-145 2-103 (104)
53 PTZ00051 thioredoxin; Provisio 99.7 9.9E-16 2.1E-20 115.2 10.8 92 46-142 3-96 (98)
54 KOG0907 Thioredoxin [Posttrans 99.6 2.1E-15 4.6E-20 113.4 11.4 84 59-147 20-104 (106)
55 PLN00410 U5 snRNP protein, DIM 99.6 3E-15 6.4E-20 117.9 12.8 97 49-148 10-119 (142)
56 cd02950 TxlA TRX-like protein 99.6 2.5E-15 5.5E-20 120.4 12.2 98 50-150 10-111 (142)
57 cd02949 TRX_NTR TRX domain, no 99.6 3.3E-15 7.1E-20 112.1 11.7 86 58-146 11-97 (97)
58 cd02947 TRX_family TRX family; 99.6 5.8E-15 1.2E-19 109.3 11.6 91 51-145 1-92 (93)
59 cd02987 Phd_like_Phd Phosducin 99.6 1.1E-14 2.5E-19 120.5 13.1 101 42-147 61-173 (175)
60 cd02986 DLP Dim1 family, Dim1- 99.6 9.5E-15 2E-19 109.6 10.3 79 50-131 2-82 (114)
61 TIGR01130 ER_PDI_fam protein d 99.6 1.4E-14 3E-19 139.9 13.5 112 41-154 344-459 (462)
62 cd02975 PfPDO_like_N Pyrococcu 99.6 2.9E-14 6.3E-19 109.7 11.0 95 52-150 14-111 (113)
63 TIGR01295 PedC_BrcD bacterioci 99.6 5E-14 1.1E-18 109.7 12.3 99 43-146 6-121 (122)
64 KOG0908 Thioredoxin-like prote 99.5 3.5E-14 7.6E-19 118.5 10.0 120 45-169 3-132 (288)
65 KOG0191 Thioredoxin/protein di 99.5 4.5E-14 9.8E-19 132.4 10.0 108 44-152 145-255 (383)
66 cd02982 PDI_b'_family Protein 99.5 1.2E-13 2.6E-18 104.8 10.1 94 52-148 4-102 (103)
67 cd02951 SoxW SoxW family; SoxW 99.5 2.6E-13 5.7E-18 106.8 11.6 97 51-150 4-120 (125)
68 PRK03147 thiol-disulfide oxido 99.5 9.2E-13 2E-17 109.8 14.3 113 34-148 35-171 (173)
69 cd02988 Phd_like_VIAF Phosduci 99.5 4.8E-13 1E-17 112.3 12.4 98 42-146 81-189 (192)
70 TIGR00411 redox_disulf_1 small 99.5 5.3E-13 1.1E-17 96.7 10.4 80 63-148 2-81 (82)
71 PTZ00062 glutaredoxin; Provisi 99.4 3.9E-12 8.5E-17 107.1 15.0 108 49-170 5-114 (204)
72 cd02952 TRP14_like Human TRX-r 99.4 2.1E-12 4.6E-17 99.1 9.9 79 49-130 8-103 (119)
73 PRK14018 trifunctional thiored 99.4 1.1E-11 2.5E-16 117.9 14.2 101 44-148 42-172 (521)
74 PRK15412 thiol:disulfide inter 99.3 1E-10 2.2E-15 98.4 15.1 87 58-150 66-177 (185)
75 TIGR02187 GlrX_arch Glutaredox 99.3 2.2E-11 4.8E-16 105.0 11.2 95 47-147 119-214 (215)
76 PHA02125 thioredoxin-like prot 99.3 3.6E-11 7.9E-16 85.3 9.3 68 64-143 2-71 (75)
77 PF13848 Thioredoxin_6: Thiore 99.3 2.3E-10 4.9E-15 96.3 15.0 163 77-249 7-184 (184)
78 cd02959 ERp19 Endoplasmic reti 99.3 1.4E-11 3E-16 95.3 6.9 88 50-140 9-104 (117)
79 TIGR00412 redox_disulf_2 small 99.2 5.4E-11 1.2E-15 84.5 8.9 73 64-145 2-75 (76)
80 cd02983 P5_C P5 family, C-term 99.2 5E-11 1.1E-15 93.7 9.5 108 253-361 2-116 (130)
81 cd03072 PDI_b'_ERp44 PDIb' fam 99.2 3.4E-11 7.3E-16 92.0 8.0 103 255-361 1-109 (111)
82 TIGR02738 TrbB type-F conjugat 99.2 2E-10 4.4E-15 92.7 12.8 86 58-148 48-152 (153)
83 PRK00293 dipZ thiol:disulfide 99.2 3E-10 6.4E-15 111.4 15.7 101 44-148 453-569 (571)
84 PF13098 Thioredoxin_2: Thiore 99.2 5.7E-11 1.2E-15 91.5 8.3 87 59-145 4-112 (112)
85 TIGR00385 dsbE periplasmic pro 99.2 4.1E-10 8.8E-15 93.7 13.5 86 58-149 61-171 (173)
86 cd02955 SSP411 TRX domain, SSP 99.2 1.2E-10 2.7E-15 90.3 7.9 79 49-130 4-94 (124)
87 PRK11509 hydrogenase-1 operon 99.1 8.2E-10 1.8E-14 85.7 12.0 105 46-152 20-127 (132)
88 cd03073 PDI_b'_ERp72_ERp57 PDI 99.1 4.2E-10 9.1E-15 85.8 9.0 102 256-360 2-111 (111)
89 cd03009 TryX_like_TryX_NRX Try 99.1 4.4E-10 9.5E-15 89.1 9.4 73 59-131 17-114 (131)
90 KOG0913 Thiol-disulfide isomer 99.1 4E-11 8.6E-16 99.7 2.7 105 42-150 23-127 (248)
91 KOG0914 Thioredoxin-like prote 99.1 4.4E-10 9.4E-15 92.2 8.4 88 41-130 122-218 (265)
92 cd02973 TRX_GRX_like Thioredox 99.1 6E-10 1.3E-14 77.2 7.7 65 63-134 2-66 (67)
93 cd03011 TlpA_like_ScsD_MtbDsbE 99.1 9.2E-10 2E-14 86.2 9.1 94 46-143 6-120 (123)
94 TIGR02740 TraF-like TraF-like 99.1 1.2E-09 2.5E-14 97.0 10.5 89 59-150 165-265 (271)
95 cd03010 TlpA_like_DsbE TlpA-li 99.0 1.8E-09 3.9E-14 85.1 9.8 78 59-141 24-126 (127)
96 cd02964 TryX_like_family Trypa 99.0 1.1E-09 2.5E-14 86.8 8.5 73 59-131 16-114 (132)
97 cd02982 PDI_b'_family Protein 99.0 1.5E-09 3.2E-14 82.2 8.6 98 261-360 3-103 (103)
98 PRK13728 conjugal transfer pro 99.0 2.8E-08 6.1E-13 81.7 14.3 83 64-151 73-173 (181)
99 TIGR02661 MauD methylamine deh 98.9 1.8E-08 4E-13 85.0 13.2 86 59-147 73-177 (189)
100 cd03008 TryX_like_RdCVF Trypar 98.9 7.2E-09 1.6E-13 82.7 10.1 76 59-134 24-130 (146)
101 PF13905 Thioredoxin_8: Thiore 98.9 7.3E-09 1.6E-13 77.1 9.6 66 60-126 1-91 (95)
102 cd03026 AhpF_NTD_C TRX-GRX-lik 98.9 6.8E-09 1.5E-13 75.9 8.8 76 60-142 12-87 (89)
103 cd02966 TlpA_like_family TlpA- 98.9 6.4E-09 1.4E-13 79.8 9.1 74 59-134 18-116 (116)
104 COG4232 Thiol:disulfide interc 98.9 8E-09 1.7E-13 97.8 10.6 109 39-148 449-567 (569)
105 PF07912 ERp29_N: ERp29, N-ter 98.9 8.9E-08 1.9E-12 72.0 12.8 106 43-150 4-120 (126)
106 cd02958 UAS UAS family; UAS is 98.8 2.4E-08 5.3E-13 77.0 9.6 93 54-149 11-111 (114)
107 COG2143 Thioredoxin-related pr 98.8 1.1E-07 2.4E-12 74.2 12.5 96 53-148 35-148 (182)
108 PLN02919 haloacid dehalogenase 98.8 5.4E-08 1.2E-12 101.9 13.8 90 59-150 419-537 (1057)
109 TIGR01626 ytfJ_HI0045 conserve 98.8 8.9E-08 1.9E-12 79.3 11.4 80 59-144 58-175 (184)
110 PF13899 Thioredoxin_7: Thiore 98.8 3.6E-08 7.9E-13 71.1 7.8 70 52-125 9-81 (82)
111 KOG2603 Oligosaccharyltransfer 98.7 6.3E-08 1.4E-12 84.2 9.8 116 39-154 36-171 (331)
112 cd02967 mauD Methylamine utili 98.7 3.2E-08 6.9E-13 76.3 7.2 60 59-121 20-82 (114)
113 PLN02399 phospholipid hydroper 98.7 3.1E-07 6.6E-12 79.5 12.1 90 59-150 98-235 (236)
114 smart00594 UAS UAS domain. 98.7 1.4E-07 3.1E-12 73.5 9.0 87 56-145 23-121 (122)
115 cd02960 AGR Anterior Gradient 98.6 1E-07 2.2E-12 74.0 7.2 73 53-129 16-92 (130)
116 PTZ00056 glutathione peroxidas 98.6 5.1E-07 1.1E-11 76.6 10.7 63 33-104 19-81 (199)
117 PF08534 Redoxin: Redoxin; In 98.6 4.8E-07 1E-11 73.0 9.6 98 30-136 3-135 (146)
118 cd03012 TlpA_like_DipZ_like Tl 98.5 4.5E-07 9.8E-12 71.2 8.6 74 59-134 22-124 (126)
119 cd03003 PDI_a_ERdj5_N PDIa fam 98.5 7.3E-07 1.6E-11 67.0 9.0 99 253-355 1-100 (101)
120 PLN02412 probable glutathione 98.5 1.8E-06 3.8E-11 71.4 11.7 109 33-150 9-165 (167)
121 cd02969 PRX_like1 Peroxiredoxi 98.5 2.9E-06 6.3E-11 70.4 13.1 91 59-151 24-154 (171)
122 TIGR02196 GlrX_YruB Glutaredox 98.5 7.6E-07 1.6E-11 62.5 8.1 69 64-146 2-74 (74)
123 PF00085 Thioredoxin: Thioredo 98.5 2E-06 4.3E-11 64.7 10.6 98 256-357 2-101 (103)
124 cd03004 PDI_a_ERdj5_C PDIa fam 98.5 1.6E-06 3.6E-11 65.5 9.9 100 253-356 1-104 (104)
125 PF00578 AhpC-TSA: AhpC/TSA fa 98.5 1.6E-06 3.5E-11 67.6 9.9 93 31-132 3-123 (124)
126 cd03001 PDI_a_P5 PDIa family, 98.4 2.2E-06 4.7E-11 64.6 9.5 99 255-357 2-103 (103)
127 cd01659 TRX_superfamily Thiore 98.4 1.5E-06 3.3E-11 58.6 6.8 60 64-127 1-63 (69)
128 COG0526 TrxA Thiol-disulfide i 98.4 2.2E-06 4.8E-11 65.6 8.2 68 60-130 32-102 (127)
129 PF02114 Phosducin: Phosducin; 98.3 7.7E-06 1.7E-10 72.1 11.6 102 42-148 124-237 (265)
130 PF13192 Thioredoxin_3: Thiore 98.3 6.3E-06 1.4E-10 58.4 8.9 73 65-146 3-76 (76)
131 cd03069 PDI_b_ERp57 PDIb famil 98.3 3.2E-06 6.9E-11 63.9 7.3 91 153-250 2-103 (104)
132 cd00340 GSH_Peroxidase Glutath 98.3 5.6E-06 1.2E-10 67.3 9.1 43 59-104 21-63 (152)
133 cd02965 HyaE HyaE family; HyaE 98.3 7.4E-06 1.6E-10 61.9 8.9 95 254-351 11-107 (111)
134 TIGR02200 GlrX_actino Glutared 98.3 4.3E-06 9.2E-11 59.3 7.4 69 64-145 2-75 (77)
135 PF13728 TraF: F plasmid trans 98.3 9.3E-06 2E-10 69.6 10.6 84 59-145 119-214 (215)
136 cd03066 PDI_b_Calsequestrin_mi 98.3 4.1E-06 9E-11 63.0 7.5 94 152-251 1-101 (102)
137 cd02981 PDI_b_family Protein D 98.3 3.8E-06 8.1E-11 62.6 7.1 91 154-250 2-97 (97)
138 cd02981 PDI_b_family Protein D 98.2 1.1E-05 2.3E-10 60.2 9.4 88 50-147 7-96 (97)
139 TIGR02540 gpx7 putative glutat 98.2 1.9E-05 4.2E-10 64.2 11.4 43 59-103 21-63 (153)
140 TIGR03143 AhpF_homolog putativ 98.2 2.9E-05 6.3E-10 76.7 14.7 177 60-247 366-554 (555)
141 TIGR01126 pdi_dom protein disu 98.2 1.5E-05 3.2E-10 59.8 9.3 98 258-359 1-101 (102)
142 cd03006 PDI_a_EFP1_N PDIa fami 98.2 1.9E-05 4.1E-10 60.4 9.9 100 253-356 9-113 (113)
143 cd03002 PDI_a_MPD1_like PDI fa 98.2 1.4E-05 2.9E-10 60.9 9.0 99 255-357 2-109 (109)
144 TIGR01068 thioredoxin thioredo 98.2 2.1E-05 4.6E-10 58.7 9.8 98 259-360 2-101 (101)
145 PRK10996 thioredoxin 2; Provis 98.2 2.4E-05 5.1E-10 62.5 10.3 100 257-360 39-139 (139)
146 KOG2501 Thioredoxin, nucleored 98.1 6.7E-06 1.5E-10 65.3 6.3 73 59-131 32-130 (157)
147 TIGR03137 AhpC peroxiredoxin. 98.1 5.6E-05 1.2E-09 63.6 12.0 110 30-146 5-153 (187)
148 PRK09381 trxA thioredoxin; Pro 98.1 4.2E-05 9.2E-10 58.2 10.2 102 255-360 5-108 (109)
149 cd02996 PDI_a_ERp44 PDIa famil 98.1 2.6E-05 5.6E-10 59.4 8.7 98 255-356 3-108 (108)
150 cd03065 PDI_b_Calsequestrin_N 98.1 2.2E-05 4.7E-10 60.6 8.2 103 254-360 10-119 (120)
151 PRK10877 protein disulfide iso 98.1 1.5E-05 3.2E-10 69.3 7.9 82 60-148 107-230 (232)
152 cd03017 PRX_BCP Peroxiredoxin 98.0 4E-05 8.7E-10 61.2 9.6 83 59-143 22-137 (140)
153 cd02961 PDI_a_family Protein D 98.0 3.6E-05 7.8E-10 57.2 8.6 95 257-355 2-100 (101)
154 cd02998 PDI_a_ERp38 PDIa famil 98.0 3.5E-05 7.6E-10 58.0 8.3 97 256-356 3-105 (105)
155 KOG1672 ATP binding protein [P 98.0 2.7E-05 5.9E-10 63.4 7.7 86 43-132 66-152 (211)
156 cd03072 PDI_b'_ERp44 PDIb' fam 98.0 6.5E-05 1.4E-09 57.4 9.5 104 45-150 1-109 (111)
157 cd03015 PRX_Typ2cys Peroxiredo 98.0 7.7E-05 1.7E-09 62.0 10.6 88 59-148 28-156 (173)
158 PTZ00256 glutathione peroxidas 98.0 0.00012 2.7E-09 61.3 11.6 63 33-104 20-83 (183)
159 TIGR02739 TraF type-F conjugat 98.0 8E-05 1.7E-09 65.0 10.7 87 60-149 150-248 (256)
160 KOG0912 Thiol-disulfide isomer 98.0 3.6E-05 7.7E-10 67.1 8.2 129 160-291 4-147 (375)
161 cd03067 PDI_b_PDIR_N PDIb fami 98.0 6.2E-05 1.3E-09 54.4 8.0 94 50-147 9-110 (112)
162 cd03005 PDI_a_ERp46 PDIa famil 97.9 9.1E-05 2E-09 55.5 9.1 97 255-356 2-102 (102)
163 cd03074 PDI_b'_Calsequestrin_C 97.9 0.00015 3.2E-09 53.1 9.4 92 253-346 1-103 (120)
164 cd02994 PDI_a_TMX PDIa family, 97.9 0.00015 3.2E-09 54.3 10.0 96 255-357 3-100 (101)
165 TIGR02180 GRX_euk Glutaredoxin 97.9 3.8E-05 8.3E-10 55.3 6.2 59 64-129 1-64 (84)
166 PRK09437 bcp thioredoxin-depen 97.9 0.00018 3.8E-09 58.5 10.8 99 31-138 8-142 (154)
167 cd02991 UAS_ETEA UAS family, E 97.9 0.00021 4.5E-09 54.9 10.4 90 57-150 14-114 (116)
168 cd02970 PRX_like2 Peroxiredoxi 97.9 0.00017 3.8E-09 58.0 10.2 46 61-108 25-70 (149)
169 PRK00522 tpx lipid hydroperoxi 97.9 0.00027 5.8E-09 58.3 11.4 42 59-104 43-85 (167)
170 PF14595 Thioredoxin_9: Thiore 97.8 9.8E-05 2.1E-09 57.9 8.3 86 48-137 28-118 (129)
171 cd02983 P5_C P5 family, C-term 97.8 0.00056 1.2E-08 53.8 12.2 108 44-153 3-119 (130)
172 cd02995 PDI_a_PDI_a'_C PDIa fa 97.8 0.00015 3.2E-09 54.4 8.7 97 255-356 2-104 (104)
173 cd02997 PDI_a_PDIR PDIa family 97.8 0.00016 3.5E-09 54.3 8.7 97 255-355 2-103 (104)
174 PF06110 DUF953: Eukaryotic pr 97.8 0.00016 3.5E-09 55.4 8.5 75 51-128 6-100 (119)
175 cd02963 TRX_DnaJ TRX domain, D 97.8 0.00017 3.7E-09 55.1 8.8 98 258-359 9-111 (111)
176 PRK11200 grxA glutaredoxin 1; 97.8 0.00021 4.5E-09 51.8 8.7 76 63-149 2-83 (85)
177 PRK13703 conjugal pilus assemb 97.8 0.0002 4.4E-09 62.2 10.0 87 60-149 143-241 (248)
178 cd02999 PDI_a_ERp44_like PDIa 97.8 0.00016 3.5E-09 54.1 8.2 83 269-356 17-100 (100)
179 cd03007 PDI_a_ERp29_N PDIa fam 97.8 0.00014 3E-09 55.6 7.8 94 153-250 3-115 (116)
180 PTZ00443 Thioredoxin domain-co 97.8 0.0002 4.3E-09 61.6 9.7 103 254-360 31-139 (224)
181 PRK11509 hydrogenase-1 operon 97.8 0.00021 4.6E-09 55.7 8.8 105 254-361 18-125 (132)
182 cd03068 PDI_b_ERp72 PDIb famil 97.8 8.5E-05 1.9E-09 56.3 6.4 93 152-250 1-107 (107)
183 cd03073 PDI_b'_ERp72_ERp57 PDI 97.7 0.00029 6.4E-09 53.7 9.0 98 47-148 3-110 (111)
184 cd02989 Phd_like_TxnDC9 Phosdu 97.7 0.00037 8E-09 53.4 9.6 88 254-345 5-93 (113)
185 cd02954 DIM1 Dim1 family; Dim1 97.7 0.00028 6E-09 53.7 8.5 84 270-357 14-98 (114)
186 cd03014 PRX_Atyp2cys Peroxired 97.7 0.00019 4.2E-09 57.5 8.2 64 31-105 4-68 (143)
187 PTZ00051 thioredoxin; Provisio 97.7 0.00049 1.1E-08 51.1 9.7 82 260-345 8-89 (98)
188 cd02956 ybbN ybbN protein fami 97.7 0.00043 9.3E-09 51.2 9.2 83 270-356 12-95 (96)
189 PF03190 Thioredox_DsbH: Prote 97.7 0.00022 4.8E-09 57.6 8.0 82 46-130 23-116 (163)
190 TIGR03143 AhpF_homolog putativ 97.7 0.00029 6.2E-09 69.7 10.3 93 46-145 461-554 (555)
191 cd03018 PRX_AhpE_like Peroxire 97.6 0.00044 9.6E-09 55.7 9.5 41 61-103 29-70 (149)
192 PF01216 Calsequestrin: Calseq 97.6 0.0012 2.6E-08 59.0 12.4 189 152-357 35-244 (383)
193 PRK10382 alkyl hydroperoxide r 97.6 0.00094 2E-08 56.0 11.4 99 43-148 19-155 (187)
194 cd03020 DsbA_DsbC_DsbG DsbA fa 97.6 7.8E-05 1.7E-09 63.3 5.0 83 60-145 77-197 (197)
195 cd02947 TRX_family TRX family; 97.6 0.00062 1.4E-08 49.3 9.3 89 264-356 4-92 (93)
196 cd02975 PfPDO_like_N Pyrococcu 97.6 0.00075 1.6E-08 51.7 9.8 87 274-363 25-113 (113)
197 COG3118 Thioredoxin domain-con 97.6 0.00041 8.9E-09 60.9 9.0 105 253-361 23-131 (304)
198 cd02957 Phd_like Phosducin (Ph 97.6 0.00075 1.6E-08 51.7 9.6 86 254-344 5-93 (113)
199 PF11009 DUF2847: Protein of u 97.6 0.0011 2.4E-08 49.3 9.9 90 49-141 6-104 (105)
200 PF00462 Glutaredoxin: Glutare 97.6 0.00037 8E-09 46.7 6.9 55 64-129 1-59 (60)
201 PRK13190 putative peroxiredoxi 97.6 0.00079 1.7E-08 57.4 10.5 88 59-148 26-153 (202)
202 PRK15317 alkyl hydroperoxide r 97.6 0.00053 1.1E-08 67.3 10.6 98 46-150 101-199 (517)
203 KOG0910 Thioredoxin-like prote 97.5 0.00063 1.4E-08 53.7 8.4 106 252-361 42-149 (150)
204 cd02976 NrdH NrdH-redoxin (Nrd 97.5 0.0003 6.6E-09 48.8 6.1 67 64-144 2-72 (73)
205 cd02971 PRX_family Peroxiredox 97.5 0.00069 1.5E-08 53.9 8.9 44 59-104 21-65 (140)
206 cd02949 TRX_NTR TRX domain, no 97.5 0.0015 3.2E-08 48.5 9.8 87 266-356 9-96 (97)
207 cd02948 TRX_NDPK TRX domain, T 97.5 0.0019 4.1E-08 48.4 10.4 93 259-357 6-100 (102)
208 KOG3414 Component of the U4/U6 97.5 0.0013 2.7E-08 49.8 8.9 78 50-130 11-90 (142)
209 KOG3425 Uncharacterized conser 97.5 0.00093 2E-08 50.1 8.0 73 51-126 13-104 (128)
210 cd03071 PDI_b'_NRX PDIb' famil 97.4 0.0012 2.6E-08 48.3 7.9 99 257-360 3-115 (116)
211 cd02993 PDI_a_APS_reductase PD 97.4 0.0015 3.2E-08 49.7 9.2 97 255-355 3-108 (109)
212 PRK10606 btuE putative glutath 97.4 0.00059 1.3E-08 56.9 7.2 43 59-104 24-66 (183)
213 cd02968 SCO SCO (an acronym fo 97.4 0.00058 1.3E-08 54.5 6.8 46 59-104 21-68 (142)
214 PF07449 HyaE: Hydrogenase-1 e 97.3 0.0012 2.6E-08 49.4 7.6 92 42-136 8-102 (107)
215 cd02950 TxlA TRX-like protein 97.3 0.0025 5.4E-08 51.0 9.9 96 262-361 12-111 (142)
216 cd03069 PDI_b_ERp57 PDIb famil 97.3 0.0032 7E-08 47.4 10.0 89 49-148 7-103 (104)
217 cd03000 PDI_a_TMX3 PDIa family 97.3 0.0015 3.3E-08 49.1 8.1 93 261-359 7-103 (104)
218 PTZ00137 2-Cys peroxiredoxin; 97.3 0.004 8.7E-08 54.8 11.7 87 59-147 97-223 (261)
219 TIGR02183 GRXA Glutaredoxin, G 97.3 0.0018 3.9E-08 46.9 7.9 75 64-149 2-82 (86)
220 KOG4277 Uncharacterized conser 97.3 0.0051 1.1E-07 53.8 11.8 161 164-337 36-210 (468)
221 KOG0911 Glutaredoxin-related p 97.3 0.00056 1.2E-08 57.4 5.7 76 57-136 14-90 (227)
222 cd02984 TRX_PICOT TRX domain, 97.3 0.0042 9.2E-08 45.8 10.1 73 261-337 3-78 (97)
223 PRK15000 peroxidase; Provision 97.3 0.0026 5.6E-08 54.1 9.8 87 59-147 33-160 (200)
224 PF02966 DIM1: Mitosis protein 97.3 0.0063 1.4E-07 46.8 10.7 79 50-131 8-88 (133)
225 cd02962 TMX2 TMX2 family; comp 97.2 0.0042 9E-08 50.1 10.2 89 255-345 30-126 (152)
226 cd02953 DsbDgamma DsbD gamma f 97.2 0.0031 6.7E-08 47.4 8.6 90 263-356 4-103 (104)
227 TIGR03140 AhpF alkyl hydropero 97.2 0.0034 7.4E-08 61.6 10.9 96 46-148 102-198 (515)
228 cd02985 TRX_CDSP32 TRX family, 97.1 0.0091 2E-07 44.8 10.7 83 270-357 15-100 (103)
229 PRK13599 putative peroxiredoxi 97.1 0.0058 1.3E-07 52.5 10.6 87 60-148 28-155 (215)
230 cd03023 DsbA_Com1_like DsbA fa 97.1 0.0038 8.3E-08 50.3 9.0 30 60-89 5-34 (154)
231 cd03419 GRX_GRXh_1_2_like Glut 97.1 0.002 4.4E-08 46.0 6.4 57 64-129 2-63 (82)
232 PRK11657 dsbG disulfide isomer 97.1 0.004 8.6E-08 54.9 9.5 81 61-146 118-249 (251)
233 cd03066 PDI_b_Calsequestrin_mi 97.1 0.011 2.5E-07 44.2 10.7 94 45-148 2-100 (102)
234 PRK13191 putative peroxiredoxi 97.0 0.0079 1.7E-07 51.7 10.6 87 60-148 33-160 (215)
235 PF13462 Thioredoxin_4: Thiore 97.0 0.0065 1.4E-07 49.5 9.6 84 59-147 11-162 (162)
236 cd03016 PRX_1cys Peroxiredoxin 97.0 0.0071 1.5E-07 51.6 9.8 85 62-148 28-153 (203)
237 PRK13189 peroxiredoxin; Provis 97.0 0.0096 2.1E-07 51.5 10.5 87 60-148 35-162 (222)
238 cd02992 PDI_a_QSOX PDIa family 96.9 0.0083 1.8E-07 46.0 8.9 80 255-338 3-89 (114)
239 cd02066 GRX_family Glutaredoxi 96.9 0.0037 8E-08 43.0 6.3 56 64-130 2-61 (72)
240 PHA02278 thioredoxin-like prot 96.9 0.013 2.9E-07 43.9 9.6 90 261-354 5-99 (103)
241 cd02987 Phd_like_Phd Phosducin 96.9 0.012 2.6E-07 48.8 10.2 81 252-337 61-145 (175)
242 TIGR02190 GlrX-dom Glutaredoxi 96.8 0.0028 6.1E-08 45.0 5.3 58 61-129 7-67 (79)
243 TIGR02189 GlrX-like_plant Glut 96.8 0.0047 1E-07 46.0 6.4 62 56-130 4-72 (99)
244 PTZ00253 tryparedoxin peroxida 96.7 0.023 4.9E-07 48.3 11.0 86 59-146 35-161 (199)
245 cd03029 GRX_hybridPRX5 Glutare 96.7 0.014 2.9E-07 40.6 7.7 66 64-145 3-71 (72)
246 TIGR02194 GlrX_NrdH Glutaredox 96.6 0.0038 8.3E-08 43.4 4.7 66 65-143 2-70 (72)
247 PHA03050 glutaredoxin; Provisi 96.6 0.0068 1.5E-07 45.9 6.3 68 53-130 6-80 (108)
248 PF05768 DUF836: Glutaredoxin- 96.6 0.01 2.2E-07 42.4 6.8 77 64-146 2-81 (81)
249 TIGR02181 GRX_bact Glutaredoxi 96.6 0.0036 7.7E-08 44.4 4.3 55 64-129 1-59 (79)
250 cd03418 GRX_GRXb_1_3_like Glut 96.6 0.0058 1.2E-07 42.8 5.3 56 64-130 2-62 (75)
251 TIGR00411 redox_disulf_1 small 96.6 0.018 4E-07 40.8 8.0 77 277-360 5-82 (82)
252 PRK10329 glutaredoxin-like pro 96.6 0.026 5.7E-07 40.2 8.6 71 64-148 3-76 (81)
253 PLN02309 5'-adenylylsulfate re 96.5 0.017 3.7E-07 55.1 9.6 103 253-359 345-456 (457)
254 cd02986 DLP Dim1 family, Dim1- 96.5 0.023 4.9E-07 43.1 8.1 65 270-338 14-79 (114)
255 TIGR00424 APS_reduc 5'-adenyly 96.5 0.021 4.5E-07 54.6 9.8 104 252-359 350-462 (463)
256 cd03027 GRX_DEP Glutaredoxin ( 96.4 0.0085 1.8E-07 41.8 5.4 55 64-129 3-61 (73)
257 cd02988 Phd_like_VIAF Phosduci 96.4 0.043 9.2E-07 46.2 10.4 82 250-338 79-163 (192)
258 TIGR03140 AhpF alkyl hydropero 96.3 0.17 3.8E-06 49.7 15.8 114 216-333 60-176 (515)
259 PRK15317 alkyl hydroperoxide r 96.3 0.18 3.8E-06 49.6 15.8 113 217-333 60-175 (517)
260 TIGR00365 monothiol glutaredox 96.3 0.016 3.5E-07 42.9 6.5 67 51-129 3-77 (97)
261 PF07912 ERp29_N: ERp29, N-ter 96.3 0.015 3.3E-07 44.1 6.2 95 153-251 6-119 (126)
262 PLN00410 U5 snRNP protein, DIM 96.3 0.074 1.6E-06 42.2 10.3 88 270-360 23-120 (142)
263 cd02972 DsbA_family DsbA famil 96.2 0.019 4.1E-07 41.9 6.5 59 64-125 1-91 (98)
264 KOG0907 Thioredoxin [Posttrans 96.2 0.036 7.9E-07 41.7 7.8 65 270-338 21-85 (106)
265 TIGR01295 PedC_BrcD bacterioci 96.1 0.06 1.3E-06 41.8 9.1 100 255-356 8-120 (122)
266 KOG2640 Thioredoxin [Function 96.0 0.0022 4.8E-08 56.5 0.7 94 53-150 67-163 (319)
267 KOG3170 Conserved phosducin-li 95.8 0.1 2.2E-06 43.2 9.4 108 42-157 90-208 (240)
268 cd03068 PDI_b_ERp72 PDIb famil 95.7 0.21 4.5E-06 37.7 10.4 90 49-148 7-107 (107)
269 cd03026 AhpF_NTD_C TRX-GRX-lik 95.7 0.078 1.7E-06 38.6 7.7 63 268-333 9-71 (89)
270 PF13743 Thioredoxin_5: Thiore 95.7 0.016 3.5E-07 48.1 4.5 158 66-241 2-172 (176)
271 KOG1672 ATP binding protein [P 95.7 0.055 1.2E-06 44.5 7.3 92 241-337 55-147 (211)
272 cd03067 PDI_b_PDIR_N PDIb fami 95.7 0.11 2.3E-06 38.0 7.9 94 261-357 10-109 (112)
273 cd02952 TRP14_like Human TRX-r 95.6 0.1 2.2E-06 40.2 8.3 67 270-338 21-101 (119)
274 cd03028 GRX_PICOT_like Glutare 95.6 0.045 9.7E-07 39.9 6.1 64 55-130 3-74 (90)
275 cd02951 SoxW SoxW family; SoxW 95.5 0.12 2.6E-06 40.1 8.6 95 263-361 6-120 (125)
276 COG0695 GrxC Glutaredoxin and 95.4 0.039 8.5E-07 39.2 5.1 51 64-123 3-59 (80)
277 PRK10638 glutaredoxin 3; Provi 95.3 0.04 8.7E-07 39.4 5.0 56 64-130 4-63 (83)
278 PTZ00062 glutaredoxin; Provisi 95.3 0.16 3.4E-06 43.2 9.2 74 261-345 7-80 (204)
279 cd02973 TRX_GRX_like Thioredox 95.1 0.13 2.8E-06 34.8 6.8 54 277-333 5-58 (67)
280 PRK10824 glutaredoxin-4; Provi 94.5 0.094 2E-06 40.0 5.3 68 51-130 6-81 (115)
281 KOG3171 Conserved phosducin-li 94.5 0.22 4.7E-06 41.7 7.6 102 42-148 137-250 (273)
282 cd02955 SSP411 TRX domain, SSP 94.0 0.56 1.2E-05 36.4 8.7 77 259-339 4-92 (124)
283 cd02959 ERp19 Endoplasmic reti 93.9 0.44 9.6E-06 36.6 8.1 77 261-339 10-88 (117)
284 cd02966 TlpA_like_family TlpA- 93.8 0.46 1E-05 35.4 8.0 67 270-340 19-110 (116)
285 PF00837 T4_deiodinase: Iodoth 93.7 0.89 1.9E-05 39.2 10.1 56 37-92 76-134 (237)
286 cd03019 DsbA_DsbA DsbA family, 93.7 0.11 2.4E-06 42.9 4.7 41 59-102 14-54 (178)
287 PF13905 Thioredoxin_8: Thiore 93.2 0.95 2.1E-05 32.9 8.6 24 313-339 71-94 (95)
288 cd03070 PDI_b_ERp44 PDIb famil 92.9 0.19 4.2E-06 36.5 4.2 78 154-239 2-85 (91)
289 PF13098 Thioredoxin_2: Thiore 92.9 0.48 1E-05 35.7 6.8 82 268-353 3-109 (112)
290 PF02114 Phosducin: Phosducin; 92.9 0.5 1.1E-05 41.9 7.6 82 252-337 124-208 (265)
291 PRK00293 dipZ thiol:disulfide 92.8 0.66 1.4E-05 46.1 9.3 88 268-359 472-569 (571)
292 PRK03147 thiol-disulfide oxido 92.7 1.2 2.6E-05 36.5 9.5 84 271-358 62-170 (173)
293 COG1225 Bcp Peroxiredoxin [Pos 92.6 0.54 1.2E-05 37.9 6.8 59 28-93 5-64 (157)
294 PF14595 Thioredoxin_9: Thiore 92.5 0.89 1.9E-05 35.6 7.8 82 258-339 28-109 (129)
295 TIGR02740 TraF-like TraF-like 92.4 1.3 2.7E-05 39.6 9.6 87 270-360 166-264 (271)
296 PRK12759 bifunctional gluaredo 92.3 0.25 5.4E-06 46.9 5.4 54 64-128 4-69 (410)
297 cd03011 TlpA_like_ScsD_MtbDsbE 91.5 1.1 2.4E-05 34.3 7.5 37 314-353 83-119 (123)
298 KOG2603 Oligosaccharyltransfer 90.3 2 4.3E-05 38.4 8.4 101 240-343 27-143 (331)
299 KOG1752 Glutaredoxin and relat 90.0 1.5 3.2E-05 32.8 6.5 68 52-130 6-78 (104)
300 TIGR02738 TrbB type-F conjugat 89.7 7.3 0.00016 31.4 10.9 86 271-360 51-153 (153)
301 PF07449 HyaE: Hydrogenase-1 e 89.2 0.92 2E-05 34.1 4.8 80 255-337 11-92 (107)
302 PRK10954 periplasmic protein d 89.0 0.52 1.1E-05 40.2 3.9 40 60-102 37-79 (207)
303 KOG0908 Thioredoxin-like prote 88.9 2.5 5.5E-05 36.6 7.7 87 268-357 18-107 (288)
304 COG3019 Predicted metal-bindin 88.7 9.7 0.00021 29.9 10.1 75 62-149 26-104 (149)
305 cd03010 TlpA_like_DsbE TlpA-li 88.7 4.8 0.0001 31.0 9.0 76 270-350 25-124 (127)
306 cd02978 KaiB_like KaiB-like fa 88.5 2.3 5E-05 29.3 6.0 58 63-122 3-60 (72)
307 COG4232 Thiol:disulfide interc 87.5 4.4 9.5E-05 39.6 9.4 97 154-251 457-568 (569)
308 PRK14018 trifunctional thiored 87.5 4.3 9.3E-05 39.7 9.5 42 313-357 128-170 (521)
309 cd03009 TryX_like_TryX_NRX Try 87.2 4.6 0.0001 31.3 8.1 23 315-340 90-112 (131)
310 cd02958 UAS UAS family; UAS is 86.4 5.4 0.00012 30.2 7.9 85 265-353 12-104 (114)
311 PF02630 SCO1-SenC: SCO1/SenC; 86.4 3.1 6.7E-05 34.4 6.9 48 59-106 51-99 (174)
312 cd03013 PRX5_like Peroxiredoxi 86.4 2.2 4.7E-05 34.5 5.9 54 61-115 30-88 (155)
313 KOG0914 Thioredoxin-like prote 86.1 1.5 3.2E-05 37.1 4.7 64 273-337 147-215 (265)
314 TIGR00412 redox_disulf_2 small 86.1 8.7 0.00019 26.7 8.2 65 281-355 8-74 (76)
315 PF13728 TraF: F plasmid trans 86.0 6.4 0.00014 33.8 8.9 78 272-352 121-210 (215)
316 smart00594 UAS UAS domain. 86.0 5 0.00011 30.9 7.6 71 264-338 21-97 (122)
317 cd02974 AhpF_NTD_N Alkyl hydro 84.7 13 0.00029 27.1 9.1 72 59-146 18-91 (94)
318 cd03031 GRX_GRX_like Glutaredo 83.4 3.2 6.9E-05 33.2 5.5 51 64-123 2-66 (147)
319 cd01659 TRX_superfamily Thiore 83.2 9.1 0.0002 24.1 7.2 53 282-337 8-63 (69)
320 KOG3414 Component of the U4/U6 82.8 9.8 0.00021 29.3 7.4 67 266-335 18-85 (142)
321 COG1999 Uncharacterized protei 82.5 11 0.00023 32.2 8.6 59 49-107 56-116 (207)
322 TIGR02739 TraF type-F conjugat 81.9 9.6 0.00021 33.6 8.3 78 273-353 152-241 (256)
323 PF06053 DUF929: Domain of unk 79.9 15 0.00032 32.2 8.7 70 44-126 45-114 (249)
324 PRK13703 conjugal pilus assemb 79.5 14 0.0003 32.5 8.4 77 273-352 145-233 (248)
325 TIGR02654 circ_KaiB circadian 79.2 7.8 0.00017 27.8 5.6 60 61-122 3-62 (87)
326 cd02964 TryX_like_family Trypa 79.1 18 0.0004 28.0 8.5 22 316-340 91-112 (132)
327 cd02969 PRX_like1 Peroxiredoxi 79.1 22 0.00047 29.0 9.3 44 315-361 100-153 (171)
328 PRK15412 thiol:disulfide inter 79.0 24 0.00051 29.4 9.6 43 316-361 134-177 (185)
329 cd02967 mauD Methylamine utili 78.5 12 0.00025 28.0 7.1 21 316-339 87-107 (114)
330 PF00578 AhpC-TSA: AhpC/TSA fa 78.0 15 0.00034 27.7 7.7 72 269-340 24-121 (124)
331 KOG3170 Conserved phosducin-li 77.9 30 0.00065 29.1 9.3 90 242-337 80-171 (240)
332 KOG2501 Thioredoxin, nucleored 76.7 16 0.00036 29.4 7.4 80 251-339 44-127 (157)
333 PRK09301 circadian clock prote 76.4 9.8 0.00021 28.2 5.6 60 61-122 6-65 (103)
334 PF13192 Thioredoxin_3: Thiore 75.7 24 0.00051 24.4 7.7 48 281-333 8-55 (76)
335 cd02977 ArsC_family Arsenate R 75.4 2.8 6E-05 31.3 2.7 33 65-106 2-34 (105)
336 PF09673 TrbC_Ftype: Type-F co 75.0 9.8 0.00021 28.9 5.6 45 77-126 36-80 (113)
337 cd03041 GST_N_2GST_N GST_N fam 73.0 28 0.0006 24.0 7.6 71 64-148 2-76 (77)
338 COG1331 Highly conserved prote 72.9 9.7 0.00021 38.0 6.3 82 46-130 29-122 (667)
339 PHA02125 thioredoxin-like prot 72.7 21 0.00045 24.6 6.5 48 277-332 4-51 (75)
340 cd03012 TlpA_like_DipZ_like Tl 72.3 32 0.00069 26.3 8.1 22 316-340 97-118 (126)
341 TIGR02742 TrbC_Ftype type-F co 72.2 15 0.00032 28.7 6.1 65 78-148 38-114 (130)
342 cd02978 KaiB_like KaiB-like fa 71.8 16 0.00034 25.3 5.3 56 275-334 5-62 (72)
343 KOG1731 FAD-dependent sulfhydr 71.0 2.8 6E-05 40.7 2.1 49 286-337 72-126 (606)
344 PLN02919 haloacid dehalogenase 69.8 27 0.00058 37.8 9.3 89 270-362 420-538 (1057)
345 cd03008 TryX_like_RdCVF Trypar 69.4 56 0.0012 26.1 9.0 26 315-343 103-128 (146)
346 cd03035 ArsC_Yffb Arsenate Red 67.4 5.6 0.00012 29.8 2.7 20 65-84 2-21 (105)
347 PF13743 Thioredoxin_5: Thiore 67.2 3.7 7.9E-05 34.0 1.8 35 106-140 136-173 (176)
348 cd03060 GST_N_Omega_like GST_N 64.8 39 0.00085 22.7 6.5 52 65-123 2-54 (71)
349 PHA03075 glutaredoxin-like pro 64.7 34 0.00075 25.9 6.3 35 61-102 2-36 (123)
350 PF11009 DUF2847: Protein of u 64.3 58 0.0013 24.4 8.9 76 261-338 8-89 (105)
351 cd03040 GST_N_mPGES2 GST_N fam 63.8 44 0.00095 22.8 7.7 74 64-150 2-77 (77)
352 PRK01655 spxA transcriptional 63.5 9.2 0.0002 29.9 3.4 34 64-106 2-35 (131)
353 PRK13728 conjugal transfer pro 62.8 89 0.0019 26.0 9.5 87 274-362 73-173 (181)
354 TIGR01617 arsC_related transcr 62.7 9.3 0.0002 29.1 3.2 34 65-107 2-35 (117)
355 PF01323 DSBA: DSBA-like thior 62.0 11 0.00024 31.2 4.0 39 105-146 155-193 (193)
356 PF03190 Thioredox_DsbH: Prote 61.8 36 0.00078 27.7 6.5 93 243-339 8-114 (163)
357 cd03074 PDI_b'_Calsequestrin_C 61.2 68 0.0015 24.1 10.9 102 46-148 4-119 (120)
358 PF09822 ABC_transp_aux: ABC-t 60.7 1.2E+02 0.0025 26.9 10.4 66 257-322 11-86 (271)
359 PF08534 Redoxin: Redoxin; In 60.5 56 0.0012 25.5 7.6 28 314-341 95-128 (146)
360 PF07689 KaiB: KaiB domain; I 60.2 8.2 0.00018 27.4 2.3 53 68-122 4-56 (82)
361 cd03036 ArsC_like Arsenate Red 60.2 9.1 0.0002 28.9 2.8 33 65-106 2-34 (111)
362 PF10138 vWA-TerF-like: vWA fo 59.1 97 0.0021 26.2 8.8 105 212-321 36-153 (200)
363 COG4545 Glutaredoxin-related p 58.9 14 0.0003 25.5 3.1 50 65-123 5-70 (85)
364 PRK12559 transcriptional regul 58.8 13 0.00029 29.0 3.5 20 64-83 2-21 (131)
365 PF13899 Thioredoxin_7: Thiore 58.8 54 0.0012 22.8 6.5 70 262-336 9-82 (82)
366 COG3531 Predicted protein-disu 58.3 18 0.00039 30.3 4.2 43 107-149 164-209 (212)
367 KOG2507 Ubiquitin regulatory p 58.0 97 0.0021 29.3 9.2 90 58-149 16-111 (506)
368 COG3634 AhpF Alkyl hydroperoxi 57.1 53 0.0011 30.4 7.3 93 48-147 103-196 (520)
369 cd02991 UAS_ETEA UAS family, E 56.8 73 0.0016 24.2 7.2 70 265-338 12-87 (116)
370 cd00570 GST_N_family Glutathio 54.7 49 0.0011 21.3 5.6 51 66-123 3-55 (71)
371 cd03032 ArsC_Spx Arsenate Redu 54.6 19 0.00041 27.3 3.7 21 64-84 2-22 (115)
372 TIGR00385 dsbE periplasmic pro 53.6 19 0.00042 29.5 3.9 45 206-250 126-170 (173)
373 PF13417 GST_N_3: Glutathione 52.9 70 0.0015 21.7 9.5 72 66-151 1-73 (75)
374 TIGR02661 MauD methylamine deh 50.3 1.3E+02 0.0028 25.0 8.5 25 315-342 137-161 (189)
375 PF04592 SelP_N: Selenoprotein 49.0 40 0.00087 29.1 5.0 46 59-104 25-71 (238)
376 PF06491 Disulph_isomer: Disul 48.0 1.2E+02 0.0026 23.6 6.9 100 44-148 17-131 (136)
377 KOG3171 Conserved phosducin-li 47.7 23 0.00051 30.0 3.4 57 276-337 165-221 (273)
378 TIGR00762 DegV EDD domain prot 47.3 61 0.0013 28.9 6.4 143 103-271 9-169 (275)
379 PRK11200 grxA glutaredoxin 1; 46.3 1E+02 0.0022 21.6 6.8 57 276-333 4-64 (85)
380 cd03037 GST_N_GRX2 GST_N famil 44.7 78 0.0017 21.1 5.3 68 66-146 3-70 (71)
381 PRK13344 spxA transcriptional 44.6 27 0.00058 27.4 3.2 33 64-105 2-34 (132)
382 TIGR02742 TrbC_Ftype type-F co 43.6 1.2E+02 0.0026 23.7 6.6 46 204-249 58-113 (130)
383 KOG0855 Alkyl hydroperoxide re 42.6 41 0.00088 27.4 3.8 48 33-87 69-122 (211)
384 TIGR02654 circ_KaiB circadian 42.4 88 0.0019 22.5 5.2 57 276-336 8-66 (87)
385 COG2761 FrnE Predicted dithiol 42.4 42 0.00091 28.9 4.2 41 108-151 175-215 (225)
386 PF04134 DUF393: Protein of un 42.0 46 0.001 24.9 4.1 57 67-128 2-61 (114)
387 PRK09301 circadian clock prote 41.5 94 0.002 23.1 5.3 59 274-336 9-69 (103)
388 PF10281 Ish1: Putative stress 40.5 46 0.001 19.5 3.0 28 237-264 3-31 (38)
389 cd03051 GST_N_GTT2_like GST_N 40.5 1.1E+02 0.0023 20.3 6.1 52 65-123 2-57 (74)
390 cd03059 GST_N_SspA GST_N famil 39.6 80 0.0017 21.0 4.7 69 65-147 2-71 (73)
391 cd03045 GST_N_Delta_Epsilon GS 39.6 59 0.0013 21.8 4.1 51 65-122 2-56 (74)
392 COG1651 DsbG Protein-disulfide 38.0 38 0.00083 29.4 3.5 38 107-148 205-242 (244)
393 COG2143 Thioredoxin-related pr 37.9 71 0.0015 25.8 4.5 44 206-249 104-150 (182)
394 cd02960 AGR Anterior Gradient 37.8 1.3E+02 0.0029 23.4 6.1 73 261-338 14-90 (130)
395 PTZ00459 mucin-associated surf 37.7 22 0.00049 32.0 2.0 21 1-22 1-21 (291)
396 cd03022 DsbA_HCCA_Iso DsbA fam 37.4 45 0.00098 27.5 3.8 35 107-145 157-191 (192)
397 cd03033 ArsC_15kD Arsenate Red 37.2 44 0.00095 25.3 3.3 20 64-83 2-21 (113)
398 cd03024 DsbA_FrnE DsbA family, 36.5 47 0.001 27.7 3.7 38 105-145 163-200 (201)
399 PF04551 GcpE: GcpE protein; 36.1 79 0.0017 29.3 5.2 86 58-148 262-358 (359)
400 cd02970 PRX_like2 Peroxiredoxi 36.0 1.2E+02 0.0026 23.5 5.9 63 270-338 23-90 (149)
401 PF09822 ABC_transp_aux: ABC-t 35.8 3.1E+02 0.0067 24.2 12.7 78 42-119 6-90 (271)
402 cd02990 UAS_FAF1 UAS family, F 35.4 2.2E+02 0.0048 22.4 10.2 89 57-148 18-132 (136)
403 cd03030 GRX_SH3BGR Glutaredoxi 35.1 1.5E+02 0.0032 21.5 5.6 57 65-123 2-66 (92)
404 COG5510 Predicted small secret 35.0 57 0.0012 19.9 2.7 14 4-17 2-15 (44)
405 KOG1422 Intracellular Cl- chan 34.9 2.2E+02 0.0047 24.3 7.1 70 71-153 20-89 (221)
406 COG1651 DsbG Protein-disulfide 34.2 97 0.0021 26.8 5.5 40 205-250 203-242 (244)
407 COG1393 ArsC Arsenate reductas 33.5 56 0.0012 25.0 3.3 21 64-84 3-23 (117)
408 PLN02399 phospholipid hydroper 33.5 3.3E+02 0.0071 23.8 9.0 34 328-361 201-235 (236)
409 COG0821 gcpE 1-hydroxy-2-methy 33.2 1.8E+02 0.0039 26.8 6.8 79 71-149 263-351 (361)
410 PF01323 DSBA: DSBA-like thior 32.4 69 0.0015 26.3 4.1 40 63-104 1-40 (193)
411 PF02645 DegV: Uncharacterised 32.3 1.7E+02 0.0037 26.1 6.9 101 204-312 11-118 (280)
412 PF07689 KaiB: KaiB domain; I 32.2 31 0.00067 24.5 1.6 50 280-332 5-56 (82)
413 KOG0913 Thiol-disulfide isomer 31.9 35 0.00076 29.4 2.1 49 205-255 82-130 (248)
414 PF05768 DUF836: Glutaredoxin- 31.6 1.8E+02 0.0039 20.2 6.1 55 276-335 3-57 (81)
415 COG0278 Glutaredoxin-related p 30.6 1.3E+02 0.0028 22.3 4.5 72 51-130 6-82 (105)
416 cd03019 DsbA_DsbA DsbA family, 30.2 66 0.0014 26.0 3.6 23 106-130 132-154 (178)
417 PF06953 ArsD: Arsenical resis 30.0 2.6E+02 0.0057 21.6 7.4 69 78-150 22-103 (123)
418 cd03014 PRX_Atyp2cys Peroxired 29.8 2.5E+02 0.0055 21.6 6.8 26 315-340 94-122 (143)
419 PF02966 DIM1: Mitosis protein 29.7 2.8E+02 0.006 21.8 8.9 63 266-332 15-78 (133)
420 PRK00366 ispG 4-hydroxy-3-meth 29.0 2.3E+02 0.0049 26.4 6.8 83 59-146 263-354 (360)
421 COG1307 DegV Uncharacterized p 28.9 1.4E+02 0.0029 26.9 5.5 146 102-271 10-172 (282)
422 PF09673 TrbC_Ftype: Type-F co 27.8 2.5E+02 0.0054 21.2 6.0 23 204-226 58-80 (113)
423 PRK13730 conjugal transfer pil 27.6 1E+02 0.0023 26.1 4.1 42 106-147 151-192 (212)
424 cd03025 DsbA_FrnE_like DsbA fa 27.0 70 0.0015 26.4 3.2 26 64-89 3-28 (193)
425 PF08806 Sep15_SelM: Sep15/Sel 26.5 81 0.0018 22.1 2.9 37 215-251 39-76 (78)
426 PRK10877 protein disulfide iso 26.0 1.1E+02 0.0024 26.5 4.3 40 206-250 191-230 (232)
427 PF03032 Brevenin: Brevenin/es 25.9 46 0.001 20.7 1.4 7 3-9 2-8 (46)
428 TIGR00612 ispG_gcpE 1-hydroxy- 25.5 1.7E+02 0.0038 26.9 5.5 69 58-131 253-330 (346)
429 PF06842 DUF1242: Protein of u 25.0 55 0.0012 19.2 1.5 17 11-27 2-18 (36)
430 PLN03207 stomagen; Provisional 23.7 78 0.0017 23.1 2.3 12 61-72 65-76 (113)
431 PF13462 Thioredoxin_4: Thiore 23.5 1.4E+02 0.003 23.6 4.3 37 207-249 126-162 (162)
432 cd03034 ArsC_ArsC Arsenate Red 23.3 84 0.0018 23.6 2.7 19 65-83 2-20 (112)
433 PF11587 Prion_bPrPp: Major pr 23.1 38 0.00083 18.6 0.6 18 4-21 1-18 (29)
434 PF06616 BsuBI_PstI_RE: BsuBI/ 23.1 2.9E+02 0.0063 25.1 6.4 62 289-350 167-237 (306)
435 COG5429 Uncharacterized secret 23.0 1.2E+02 0.0026 26.3 3.7 26 62-87 42-68 (261)
436 cd03025 DsbA_FrnE_like DsbA fa 22.4 66 0.0014 26.5 2.2 23 106-128 158-180 (193)
437 PF07700 HNOB: Heme NO binding 21.9 2.5E+02 0.0054 22.9 5.5 45 59-105 126-170 (171)
438 PF14492 EFG_II: Elongation Fa 21.6 2.8E+02 0.006 19.0 4.9 37 271-307 3-39 (75)
439 TIGR00014 arsC arsenate reduct 21.5 96 0.0021 23.4 2.7 20 65-84 2-21 (114)
440 cd03055 GST_N_Omega GST_N fami 21.4 3E+02 0.0065 19.3 6.3 53 64-123 19-72 (89)
441 COG3915 Uncharacterized protei 20.4 4.4E+02 0.0094 20.8 8.6 84 41-130 31-116 (155)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-44 Score=332.46 Aligned_cols=316 Identities=29% Similarity=0.473 Sum_probs=274.8
Q ss_pred CCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971 40 KIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP 119 (363)
Q Consensus 40 ~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 119 (363)
..+..|+.|+.+||+..|+.++.++|.||||||+||++++|+++++|+.+++.++++.+++|||+++.++|.+|+|+|||
T Consensus 22 ~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred CcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 45789999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred EEEEEeCCEE-EeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCC----hhHHHHHHHHhh
Q 017971 120 TLKIFMHGIP-TEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD----ESVMSNLALKYK 194 (363)
Q Consensus 120 t~~~~~~g~~-~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~a~~~~ 194 (363)
|+.+|++|.. ..|+|+|++++|+.|++++.+|++..+.+..+++.++...+ +.+++|+.+ ...+...|..++
T Consensus 102 TlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~---~~vig~F~d~~~~~~~~~~~a~~l~ 178 (493)
T KOG0190|consen 102 TLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKD---VVVIGFFKDLESLAESFFDAASKLR 178 (493)
T ss_pred eEEEEecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCc---eEEEEEecccccchHHHHHHHHhcc
Confidence 9999999995 88999999999999999999999999999999999998854 588888753 235677788888
Q ss_pred hhhHHHHhhhcchhhhhhcCCCC--CCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhcCCCcccCChhhHHhhhcCCCc
Q 017971 195 KKAWFAVAKDFSEDTMVLYDFDK--VPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRK 272 (363)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~--~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p~~~~lt~~~~~~l~~~~~~ 272 (363)
+.+.|+ ++.+.++.+.++... .+-++++++.++....|.|.++.+.|..||..+++|++.++|..+...+..+..+
T Consensus 179 ~d~~F~--~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~ 256 (493)
T KOG0190|consen 179 DDYKFA--HTSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVK 256 (493)
T ss_pred ccceee--ccCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccc
Confidence 888887 366788888888763 3447888887777788889999999999999999999999999888887777666
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCC-eEEEEeCC-CCeeEEEEEEee
Q 017971 273 IVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP-KMVVWDGN-ENYLTVSINVLK 349 (363)
Q Consensus 273 ~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P-~~vi~~~~-~~y~~~~~~~~~ 349 (363)
..+.++.+......+.+++.+.++|+++++ ++|+++|...+++.++.||+ .....| .+++.+.+ ++|...+.+...
T Consensus 257 ~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~~~~~~~~~Gl-~~~~~~~~~v~~~~~~~Ky~~~~e~~~~ 335 (493)
T KOG0190|consen 257 LGLDFFVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPESFARVLEFFGL-EEEQLPIRAVILNEDGSKYPLEEEELDQ 335 (493)
T ss_pred cceeEEeccccccHHHHHHHHHHHHHhcccceEEEEEChHHhhHHHHhcCc-ccccCCeeEEeeccccccccCccccccH
Confidence 666666555555677899999999999998 99999999999999999999 455666 66677777 466666666888
Q ss_pred hhhhhHhhhhhc
Q 017971 350 TRVCFFMLTLLQ 361 (363)
Q Consensus 350 ~~~~~~~~~~~~ 361 (363)
..|+.||..||+
T Consensus 336 ~~ie~f~~~~l~ 347 (493)
T KOG0190|consen 336 ENIESFVKDFLD 347 (493)
T ss_pred HHHHHHHHHHhc
Confidence 899999999986
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=4.4e-38 Score=304.37 Aligned_cols=299 Identities=28% Similarity=0.420 Sum_probs=242.9
Q ss_pred CCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971 42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (363)
Q Consensus 42 ~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 121 (363)
.+.+..|++++|++++++++.++|.|||+||++|+++.|+|.++++.+++...++.++.|||++++++|++|+|.++||+
T Consensus 31 ~~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 31 SEHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI 110 (477)
T ss_pred CCCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence 46799999999999999899999999999999999999999999998877667899999999999999999999999999
Q ss_pred EEEeCCEEEeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCC--h---hHHHHHHHHhhhh
Q 017971 122 KIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKK 196 (363)
Q Consensus 122 ~~~~~g~~~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~--~---~~~~~~a~~~~~~ 196 (363)
++|++|+.+.|.|.++.+.|.+|+.+.+++++.++++..++..+..... +.+++++.+ + ..+.++|..+++.
T Consensus 111 ~~~~~g~~~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~f~~~a~~~~~~ 187 (477)
T PTZ00102 111 KFFNKGNPVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIF---VAFYGEYTSKDSELYKKFEEVADKHREH 187 (477)
T ss_pred EEEECCceEEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCc---EEEEEEeccCCcHHHHHHHHHHHhcccc
Confidence 9999998889999999999999999999999999999887766543332 456665532 2 2366677777665
Q ss_pred hHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhcCCCcccCChhhHHhhhcCCCcEEEE
Q 017971 197 AWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLA 276 (363)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p~~~~lt~~~~~~l~~~~~~~~i~ 276 (363)
..|.... + ...+.+++++... ....+.+..+.++|.+||+.+++|.+.++|.+++..+...+.+.+++
T Consensus 188 ~~F~~~~----------~-~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 255 (477)
T PTZ00102 188 AKFFVKK----------H-EGKNKIYVLHKDE-EGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWF 255 (477)
T ss_pred ceEEEEc----------C-CCCCcEEEEecCC-CCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEE
Confidence 5443211 1 1236677777643 33343344699999999999999999999999999988887766544
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchh-HHhhcCCCCCCCCCeEEEEeCCCCeeEEEE---EEeehh
Q 017971 277 IVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFAD-FADTFEANKKSKLPKMVVWDGNENYLTVSI---NVLKTR 351 (363)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~-~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~---~~~~~~ 351 (363)
+. ..+..+++.+.++++|+++++ +.|+|+|+.+++. .++.||+ .++|++++.+..|+|+.+.. -++.+.
T Consensus 256 ~~---~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi---~~~P~~~i~~~~~~y~~~~~~~~~~~~~~ 329 (477)
T PTZ00102 256 CG---TTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLLI---EEFPGLAYQSPAGRYLLPPAKESFDSVEA 329 (477)
T ss_pred ec---CHHHHHHHHHHHHHHHHhccCceEEEEEechhcchhHHHhcCc---ccCceEEEEcCCcccCCCccccccCCHHH
Confidence 32 334456788999999999998 9999999999886 8899999 35899999988888865543 256889
Q ss_pred hhhHhhhhhc
Q 017971 352 VCFFMLTLLQ 361 (363)
Q Consensus 352 ~~~~~~~~~~ 361 (363)
|..|+..+++
T Consensus 330 l~~Fv~~~~~ 339 (477)
T PTZ00102 330 LIEFFKDVEA 339 (477)
T ss_pred HHHHHHHHhC
Confidence 9999998874
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=2.7e-37 Score=297.88 Aligned_cols=311 Identities=30% Similarity=0.482 Sum_probs=256.9
Q ss_pred CeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEE
Q 017971 44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (363)
Q Consensus 44 ~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 123 (363)
.|+.|++++|+++++++++++|.|||+||++|+++.|.|.++++.+++.+.++.|+.|||++++++|++++|.++||+++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 58899999999999999999999999999999999999999999988766779999999999999999999999999999
Q ss_pred EeCCEE--EeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCC-h----hHHHHHHHHhhhh
Q 017971 124 FMHGIP--TEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-E----SVMSNLALKYKKK 196 (363)
Q Consensus 124 ~~~g~~--~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~-~----~~~~~~a~~~~~~ 196 (363)
|++|+. ..|.|.++.+.|.+|+.+.+++++.++++.++++.++...+ +.+|+|+.+ . ..+.++|..+.+.
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~---~~vi~~~~~~~~~~~~~~~~~a~~~~~~ 158 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDD---VVVIGFFKDLDSELNDTFLSVAEKLRDV 158 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCC---cEEEEEECCCCcHHHHHHHHHHHHhhhc
Confidence 999876 67999999999999999999999999999999999998854 466666643 1 3577788888776
Q ss_pred hHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCc--ccccCCC--CHHHHHHHHHhhcCCCcccCChhhHHhhhcCCCc
Q 017971 197 AWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEH--NIFYGPF--DEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRK 272 (363)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~--~~~~g~~--~~~~l~~fi~~~~~p~~~~lt~~~~~~l~~~~~~ 272 (363)
..+. +...+......++.. .+.+++++...... ..|.|+. +.++|.+||..+++|.++++|.+++..+...+ +
T Consensus 159 ~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~ 235 (462)
T TIGR01130 159 YFFF-AHSSDVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-P 235 (462)
T ss_pred cceE-EecCCHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-C
Confidence 5532 223345566677765 36677776543333 3667765 56899999999999999999999999988876 6
Q ss_pred EEEEEEe-CCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCC-C-eeEEEEEE
Q 017971 273 IVLAIVE-DETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE-N-YLTVSINV 347 (363)
Q Consensus 273 ~~i~~~~-~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~-~-y~~~~~~~ 347 (363)
.+++++. +......+++.+.++++|+++++ +.|+++|+.+++.+++.+|+ ...++|+++|++.++ + |...+++.
T Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~-~~~~~P~~vi~~~~~~~~y~~~~~~~ 314 (462)
T TIGR01130 236 LVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGL-KAEKFPAVAIQDLEGNKKYPMDQEEF 314 (462)
T ss_pred ceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCC-CccCCceEEEEeCCcccccCCCcCCC
Confidence 5555554 33333357889999999999984 99999999999999999999 556799999999986 4 44444478
Q ss_pred eehhhhhHhhhhhc
Q 017971 348 LKTRVCFFMLTLLQ 361 (363)
Q Consensus 348 ~~~~~~~~~~~~~~ 361 (363)
+.+.|.+|+..+++
T Consensus 315 ~~~~i~~fi~~~~~ 328 (462)
T TIGR01130 315 SSENLEAFVKDFLD 328 (462)
T ss_pred CHHHHHHHHHHHhc
Confidence 88899999998874
No 4
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=100.00 E-value=4e-38 Score=266.44 Aligned_cols=290 Identities=23% Similarity=0.400 Sum_probs=225.4
Q ss_pred CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (363)
Q Consensus 43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 122 (363)
..|.+|+++-.+. +..+.|+|.||||||+||+++.|.|.++..+++..+.++.+|++||+..+.++.+++|+||||+.
T Consensus 28 t~VeDLddkFkdn--kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk 105 (468)
T KOG4277|consen 28 TAVEDLDDKFKDN--KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIK 105 (468)
T ss_pred hhhhhhhHHhhhc--ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEE
Confidence 3577777653332 45579999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEeecCCCCHHHHHHHHHhhcCCCceecCC-hHHHHHHHHhcCCcccEEEeecCC-hhH---HHHHHHHhhhhh
Q 017971 123 IFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNS-DAEVSDFVENAGTFFPLFIGFGLD-ESV---MSNLALKYKKKA 197 (363)
Q Consensus 123 ~~~~g~~~~y~g~~~~~~i~~~i~~~~~~~v~~i~~-~~~~~~~~~~~~~~~~~~v~~~~~-~~~---~~~~a~~~~~~~ 197 (363)
+|++|..+.|+|+|+.+.|++|+.+..++-+..|++ +.++.++...++ |.++.+... .+. +...|.......
T Consensus 106 ~~kgd~a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq---~ffVf~Gtge~PL~d~fidAASe~~~~a 182 (468)
T KOG4277|consen 106 FFKGDHAIDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQ---PFFVFFGTGEGPLFDAFIDAASEKFSVA 182 (468)
T ss_pred EecCCeeeecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccC---ceEEEEeCCCCcHHHHHHHHhhhheeee
Confidence 999999999999999999999999999999999877 334555555555 677777633 333 333343333333
Q ss_pred HHHHhhhcchhhhhhcC-CCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhcCCCcccCChhhHHhhhcCCCcEEEE
Q 017971 198 WFAVAKDFSEDTMVLYD-FDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLA 276 (363)
Q Consensus 198 ~~~~~~~~~~~~~~~~~-~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p~~~~lt~~~~~~l~~~~~~~~i~ 276 (363)
+|. +.+++++..++ .+..|.+.+|++ +......+.+.++|.+||+..++|.+-..+..++..+..+++-+++.
T Consensus 183 ~Ff---SaseeVaPe~~~~kempaV~VFKD---etf~i~de~dd~dLseWinRERf~~fLa~dgflL~EiG~sGKLVaLa 256 (468)
T KOG4277|consen 183 RFF---SASEEVAPEENDAKEMPAVAVFKD---ETFEIEDEGDDEDLSEWINRERFPGFLAADGFLLAEIGASGKLVALA 256 (468)
T ss_pred eee---ccccccCCcccchhhccceEEEcc---ceeEEEecCchhHHHHHHhHhhccchhhcccchHHHhCcCCceEEEE
Confidence 333 33455555443 344699999986 32333344578899999999999999999999999999999888887
Q ss_pred EEeCC----ChhhHHHHHHHHHHHHHhCCC-------cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC-CCeeEEE
Q 017971 277 IVEDE----TEEKSQKLVTTLKAAASANRE-------LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN-ENYLTVS 344 (363)
Q Consensus 277 ~~~~~----~~~~~~~~~~~l~~~a~~~~~-------~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~-~~y~~~~ 344 (363)
+.+.. ++....++.++.+++|+.+++ ++|+|+|+.+ +.+++-+ ..-..|.++|+|.. .+||...
T Consensus 257 VidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD---~~nqilM-~als~P~l~i~NtsnqeYfLse 332 (468)
T KOG4277|consen 257 VIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGND---LANQILM-AALSEPHLFIFNTSNQEYFLSE 332 (468)
T ss_pred EeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhH---HHHHHHH-HhhcCCeEEEEecCchheeecc
Confidence 76542 556678899999999987543 9999999987 4455545 34557999999997 5788855
Q ss_pred EEE
Q 017971 345 INV 347 (363)
Q Consensus 345 ~~~ 347 (363)
.+-
T Consensus 333 ~d~ 335 (468)
T KOG4277|consen 333 DDP 335 (468)
T ss_pred CCh
Confidence 443
No 5
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=100.00 E-value=5e-35 Score=248.02 Aligned_cols=303 Identities=21% Similarity=0.347 Sum_probs=244.1
Q ss_pred cChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCC--CCeEEEEEeCccchhhhhhCCcCcCCEEEEEe
Q 017971 48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLK--EPIVIAKVDADKYSRLASKQEIDAFPTLKIFM 125 (363)
Q Consensus 48 l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~--~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 125 (363)
++..|++.+++.++.++|.|||+||+.++.+.|.|+++|..+++.. .++.+|+|||+++..++.+|.|..|||+.+|+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 4568899999999999999999999999999999999999988664 47999999999999999999999999999999
Q ss_pred CCEEE--eecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCC--h---hHHHHHHHHhhhhhH
Q 017971 126 HGIPT--EYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAW 198 (363)
Q Consensus 126 ~g~~~--~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~--~---~~~~~~a~~~~~~~~ 198 (363)
+|... +|+|.|+.+.+.+||++.+..++.++.+..++++.-.-.. ..+|+++.. + ..++++|..+++.+.
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K---~~vIgyF~~kdspey~~~~kva~~lr~dc~ 157 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSK---RTVIGYFPSKDSPEYDNLRKVASLLRDDCV 157 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhcccc---ceEEEEeccCCCchHHHHHHHHHHHhhccE
Confidence 99865 5999999999999999999999999877666655544232 477888752 2 458888999999887
Q ss_pred HHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCc-ccccCCC-CHHHHHHHHHhhcCCCcccCChhhHHhhhcCCCcEEEE
Q 017971 199 FAVAKDFSEDTMVLYDFDKVPALVALQPSYNEH-NIFYGPF-DEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLA 276 (363)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~-~~~~g~~-~~~~l~~fi~~~~~p~~~~lt~~~~~~l~~~~~~~~i~ 276 (363)
|.+... + +.......+.+ +++++++...+ ..|.|.+ +.+.+..||.+.+.|+++|+|-+|.+.+...+.|.+|+
T Consensus 158 f~V~~g--D-~~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflIL 233 (375)
T KOG0912|consen 158 FLVGFG--D-LLKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLIL 233 (375)
T ss_pred EEeecc--c-cccCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEE
Confidence 765421 1 11111112222 67777754433 3689988 79999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEee--hhhh
Q 017971 277 IVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLK--TRVC 353 (363)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~--~~~~ 353 (363)
|...++.+..+.+...+++-...-+. +.|...||..+..-|..+|. +.+++|.+.|-+-...|--++++..- -.+.
T Consensus 234 f~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgK-s~~DLPviaIDsF~Hmylfp~f~di~~pGkLk 312 (375)
T KOG0912|consen 234 FRKKDDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGK-SPDDLPVIAIDSFRHMYLFPDFNDINIPGKLK 312 (375)
T ss_pred EecCCcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCC-CcccCcEEEeeccceeeecCchhhhcCccHHH
Confidence 99887777778888877765555555 99999999999999999999 68999998887766666666554332 2566
Q ss_pred hHhhh
Q 017971 354 FFMLT 358 (363)
Q Consensus 354 ~~~~~ 358 (363)
+|+.-
T Consensus 313 qFv~D 317 (375)
T KOG0912|consen 313 QFVAD 317 (375)
T ss_pred HHHHH
Confidence 66654
No 6
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.97 E-value=3.1e-29 Score=217.37 Aligned_cols=300 Identities=23% Similarity=0.324 Sum_probs=214.5
Q ss_pred hhccCCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHH------H-HHHHHHHHhhcCCCCeE
Q 017971 25 LLTGRGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLA------P-QLDEAAPILAKLKEPIV 97 (363)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~------~-~~~~~a~~~~~~~~~v~ 97 (363)
+....++..| .++-..+|++||++||.+++++.+..+|+||.|--+ .+... . .++-+|+.+... .+.
T Consensus 19 ~~aeegLefP---~YDGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE~~--gig 92 (383)
T PF01216_consen 19 CRAEEGLEFP---EYDGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLEDK--GIG 92 (383)
T ss_dssp -------SSS---S-SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCGGC--TEE
T ss_pred cchhhccCCc---cCCCccceEEcchhHHHHHHHhhcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhcccc--Ccc
Confidence 3444555555 377788999999999999999999999999998732 22221 2 344456666544 599
Q ss_pred EEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEE
Q 017971 98 IAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFI 177 (363)
Q Consensus 98 ~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v 177 (363)
||.||..++..+++++|+...+++++|++|+.++|.|.++++.+++|+...+..+|..|++..+++.|-.-.+. +.+|
T Consensus 93 fg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~--~klI 170 (383)
T PF01216_consen 93 FGMVDSKKDAKLAKKLGVEEEGSIYVFKDGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDD--IKLI 170 (383)
T ss_dssp EEEEETTTTHHHHHHHT--STTEEEEEETTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS---EEE
T ss_pred eEEeccHHHHHHHHhcCccccCcEEEEECCcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccc--eeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999888875543 7899
Q ss_pred eecCCh-----hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCC-CCHHHHHHHHHhhc
Q 017971 178 GFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-FDEEFLEEFIKQNF 251 (363)
Q Consensus 178 ~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~-~~~~~l~~fi~~~~ 251 (363)
||+++. ..+..+|..|...+.|.. +.++.+++.++++ ...+-+|++..+.+....|+ .+.++|.+||+.|.
T Consensus 171 GyFk~~~s~~yk~FeeAAe~F~p~IkFfA--tfd~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~ 247 (383)
T PF01216_consen 171 GYFKSEDSEHYKEFEEAAEHFQPYIKFFA--TFDKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHK 247 (383)
T ss_dssp EE-SSTTSHHHHHHHHHHHHCTTTSEEEE--E-SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-
T ss_pred EEeCCCCcHHHHHHHHHHHhhcCceeEEE--EecchhhhhcCcc-ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhc
Confidence 988653 247778889988776654 5678999999997 77888899988888888764 58999999999999
Q ss_pred CCCcccCChhhHHhhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC---cEEEEEeccCchh----HHhhcCCC
Q 017971 252 LPLSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFAD----FADTFEAN 323 (363)
Q Consensus 252 ~p~~~~lt~~~~~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~----~~~~~gi~ 323 (363)
-|.+++++.+++.... ..-....|+.|.+..++...++..+|+++|+.+.+ +.++|+|.+++|- +-+.|||+
T Consensus 248 rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Id 327 (383)
T PF01216_consen 248 RPTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGID 327 (383)
T ss_dssp S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-
T ss_pred hhHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcc
Confidence 9999999998876644 33355777777788888889999999999998765 9999999999854 66889993
Q ss_pred CCCCCCeEEEEeCC
Q 017971 324 KKSKLPKMVVWDGN 337 (363)
Q Consensus 324 ~~~~~P~~vi~~~~ 337 (363)
-..|.+.+.|.+
T Consensus 328 --l~~PqIGvVnvt 339 (383)
T PF01216_consen 328 --LSRPQIGVVNVT 339 (383)
T ss_dssp --TTS-EEEEEETT
T ss_pred --ccCCceeEEecc
Confidence 335999999986
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.91 E-value=4.5e-24 Score=163.19 Aligned_cols=104 Identities=19% Similarity=0.430 Sum_probs=94.5
Q ss_pred cCCCCCeEEcChhhHHHh---HcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhh-hhCC
Q 017971 39 FKIDGKVIELDESNFDSA---ISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA-SKQE 114 (363)
Q Consensus 39 ~~~~~~v~~l~~~~f~~~---l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~-~~~~ 114 (363)
+..++.|++|+++||+++ ++++++++|.||||||++|+.+.|.|+++|+.+++. +.|++|||++++++| ++|+
T Consensus 5 ~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~~~l~~~~~~ 81 (113)
T cd03006 5 FSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWPQGKCRKQKH 81 (113)
T ss_pred cCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCChHHHHHhcC
Confidence 445788999999999987 588899999999999999999999999999998653 999999999999999 5899
Q ss_pred cCcCCEEEEEeCCE-EEeecCCCCHHHHHHHH
Q 017971 115 IDAFPTLKIFMHGI-PTEYYGPRKAELLVRYL 145 (363)
Q Consensus 115 i~~~Pt~~~~~~g~-~~~y~g~~~~~~i~~~i 145 (363)
|.++||+++|++|+ +..|.|.++.+.|+.|+
T Consensus 82 I~~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 82 FFYFPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred CcccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 99999999999886 56799999999999884
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.89 E-value=5.3e-23 Score=155.89 Aligned_cols=99 Identities=34% Similarity=0.683 Sum_probs=91.8
Q ss_pred CeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEE
Q 017971 44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (363)
Q Consensus 44 ~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 123 (363)
++++|+.++|++.++++++++|.||++||++|+++.|.|+++++.+++ .+.|+.|||++++.+|++++|.++||+++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG---VIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC---ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 688999999999998889999999999999999999999999998865 39999999999999999999999999999
Q ss_pred EeCCEEE-eecCCCCHHHHHHHH
Q 017971 124 FMHGIPT-EYYGPRKAELLVRYL 145 (363)
Q Consensus 124 ~~~g~~~-~y~g~~~~~~i~~~i 145 (363)
|++|+.. .|.|.++.+.|.+|+
T Consensus 79 ~~~g~~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 79 FPSGMNPEKYYGDRSKESLVKFA 101 (101)
T ss_pred EcCCCCcccCCCCCCHHHHHhhC
Confidence 9999754 599999999999874
No 9
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.89 E-value=1.4e-22 Score=155.44 Aligned_cols=103 Identities=36% Similarity=0.671 Sum_probs=93.5
Q ss_pred CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCC---CCeEEEEEeCccchhhhhhCCcCcCC
Q 017971 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLK---EPIVIAKVDADKYSRLASKQEIDAFP 119 (363)
Q Consensus 43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~---~~v~~~~vd~~~~~~l~~~~~i~~~P 119 (363)
++|+++++++|++.++.+++++|.||||||++|+++.|.|+++++.+++.. ..+.++.|||++++++|++|+|.++|
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 1 SEIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred CceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 468999999999999888999999999999999999999999998876432 25999999999999999999999999
Q ss_pred EEEEEeCCEE--EeecCCCCHHHHHHHH
Q 017971 120 TLKIFMHGIP--TEYYGPRKAELLVRYL 145 (363)
Q Consensus 120 t~~~~~~g~~--~~y~g~~~~~~i~~~i 145 (363)
|+++|++|+. ..|.|.++.+.|.+|+
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999973 5699999999999985
No 10
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.88 E-value=2.2e-22 Score=152.73 Aligned_cols=98 Identities=29% Similarity=0.498 Sum_probs=88.9
Q ss_pred CeEEcChhhHHHhHcCCCeEEEEEEC--CCCh---hhhhHHHHHHHHHHHhhcCCCCeEEEEEeC-----ccchhhhhhC
Q 017971 44 KVIELDESNFDSAISSFDYILVDFYA--PWCG---HCKRLAPQLDEAAPILAKLKEPIVIAKVDA-----DKYSRLASKQ 113 (363)
Q Consensus 44 ~v~~l~~~~f~~~l~~~~~~lv~fy~--~~C~---~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~-----~~~~~l~~~~ 113 (363)
.+++|+++||++++++++.+||.||| |||+ ||++++|++.+++.. +.+++||| +++.+||++|
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~-------v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD-------LLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc-------eEEEEEecccccchhhHHHHHHh
Confidence 57899999999999999999999999 9999 999999888887642 88999999 5688999999
Q ss_pred CcC--cCCEEEEEeCCE---EEeecCC-CCHHHHHHHHHhh
Q 017971 114 EID--AFPTLKIFMHGI---PTEYYGP-RKAELLVRYLKKF 148 (363)
Q Consensus 114 ~i~--~~Pt~~~~~~g~---~~~y~g~-~~~~~i~~~i~~~ 148 (363)
+|. +||||++|++|. ++.|.|. |+.+.|++|+.++
T Consensus 75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999 999999999884 5789997 9999999999876
No 11
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.87 E-value=1.7e-21 Score=148.15 Aligned_cols=101 Identities=37% Similarity=0.679 Sum_probs=94.8
Q ss_pred eEEcChhhHHHhHcC-CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEE
Q 017971 45 VIELDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (363)
Q Consensus 45 v~~l~~~~f~~~l~~-~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 123 (363)
|..+++++|++.+.+ +++++|.||++||++|+.+.|.|.++++.+.+ ++.|+.|||++++.+|++|+|.++|++++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDENKELCKKYGVKSVPTIIF 77 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTSHHHHHHTTCSSSSEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhccchhhhccCCCCCCEEEE
Confidence 578999999999976 89999999999999999999999999998875 59999999999999999999999999999
Q ss_pred EeCCEEE-eecCCCCHHHHHHHHHhh
Q 017971 124 FMHGIPT-EYYGPRKAELLVRYLKKF 148 (363)
Q Consensus 124 ~~~g~~~-~y~g~~~~~~i~~~i~~~ 148 (363)
|++|+.. .|.|.++.+.|.+|++++
T Consensus 78 ~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 78 FKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999876 699999999999999875
No 12
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.87 E-value=1.7e-21 Score=147.68 Aligned_cols=101 Identities=32% Similarity=0.611 Sum_probs=91.1
Q ss_pred CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (363)
Q Consensus 43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 122 (363)
+.|++|++++|++.+++ .++|.|||+||++|+++.|.|+++++.+++ ..+.++.+||++++.+|++|+|.++||++
T Consensus 1 ~~v~~l~~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 1 SNVVELTDSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSDD--LGINVAKVDVTQEPGLSGRFFVTALPTIY 76 (101)
T ss_pred CceEEcChhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhcc--CCeEEEEEEccCCHhHHHHcCCcccCEEE
Confidence 36899999999998854 389999999999999999999999987643 35999999999999999999999999999
Q ss_pred EEeCCEEEeecCCCCHHHHHHHHHh
Q 017971 123 IFMHGIPTEYYGPRKAELLVRYLKK 147 (363)
Q Consensus 123 ~~~~g~~~~y~g~~~~~~i~~~i~~ 147 (363)
+|++|+...|.|.++.++|.+|+++
T Consensus 77 ~~~~g~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 77 HAKDGVFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EeCCCCEEEecCCCCHHHHHHHHhC
Confidence 9999987779999999999999864
No 13
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.87 E-value=1.6e-21 Score=148.67 Aligned_cols=99 Identities=33% Similarity=0.692 Sum_probs=89.1
Q ss_pred CeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971 44 KVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (363)
Q Consensus 44 ~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 122 (363)
.+++++.++|++.+ +.+++++|.||++||++|+++.|.|+++++.+.+ .+.|+.+||++++++|++++|+++||++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG---KVKVGSVDCQKYESLCQQANIRAYPTIR 78 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEECCchHHHHHHcCCCcccEEE
Confidence 57899999999987 5567999999999999999999999999998754 3999999999999999999999999999
Q ss_pred EEeCC-E-EEeecCCCC-HHHHHHHH
Q 017971 123 IFMHG-I-PTEYYGPRK-AELLVRYL 145 (363)
Q Consensus 123 ~~~~g-~-~~~y~g~~~-~~~i~~~i 145 (363)
+|++| + ...|.|..+ .++|.+|+
T Consensus 79 ~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 79 LYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEcCCCCCceEccCCCCCHHHHHhhC
Confidence 99987 4 446999987 99999885
No 14
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.86 E-value=3e-21 Score=148.49 Aligned_cols=110 Identities=22% Similarity=0.313 Sum_probs=94.0
Q ss_pred cCCCCCeEEcChhhHHHhHcCC-CeEEEEEECCCChh--hh--hHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhC
Q 017971 39 FKIDGKVIELDESNFDSAISSF-DYILVDFYAPWCGH--CK--RLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ 113 (363)
Q Consensus 39 ~~~~~~v~~l~~~~f~~~l~~~-~~~lv~fy~~~C~~--C~--~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~ 113 (363)
++-...|+.||++||++.+.++ .++++.||++||++ |+ +.+|.+.++|.++-. ..++.|++|||++++++|++|
T Consensus 5 ~~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~-~~~v~~~kVD~d~~~~La~~~ 83 (120)
T cd03065 5 YDGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLE-DKGIGFGLVDSKKDAKVAKKL 83 (120)
T ss_pred cCCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhh-cCCCEEEEEeCCCCHHHHHHc
Confidence 4556789999999999988555 47788888888865 99 778888888776621 124999999999999999999
Q ss_pred CcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhhc
Q 017971 114 EIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149 (363)
Q Consensus 114 ~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~~ 149 (363)
+|.++||+++|++|+.+.|.|.++.+.|++|+.+..
T Consensus 84 ~I~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 84 GLDEEDSIYVFKDDEVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred CCccccEEEEEECCEEEEeeCCCCHHHHHHHHHHHh
Confidence 999999999999999888999999999999998764
No 15
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.86 E-value=8e-21 Score=162.17 Aligned_cols=106 Identities=30% Similarity=0.574 Sum_probs=96.3
Q ss_pred CCCeEEcChhhHHHhHcC-----CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC
Q 017971 42 DGKVIELDESNFDSAISS-----FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID 116 (363)
Q Consensus 42 ~~~v~~l~~~~f~~~l~~-----~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~ 116 (363)
++.++++++++|++.+.. +++++|.||+|||++|+++.|.|+++++.+++ .+.++.+||++++++|++|+|.
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~---~v~~~~VD~~~~~~l~~~~~I~ 105 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG---QVNVADLDATRALNLAKRFAIK 105 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC---CeEEEEecCcccHHHHHHcCCC
Confidence 467999999999998843 47999999999999999999999999998865 3999999999999999999999
Q ss_pred cCCEEEEEeCCEEEee-cCCCCHHHHHHHHHhhcC
Q 017971 117 AFPTLKIFMHGIPTEY-YGPRKAELLVRYLKKFVA 150 (363)
Q Consensus 117 ~~Pt~~~~~~g~~~~y-~g~~~~~~i~~~i~~~~~ 150 (363)
++||+++|++|+.+.| .|.++.++|.+|+.+...
T Consensus 106 ~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 106 GYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred cCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 9999999999998876 578999999999988764
No 16
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.2e-20 Score=174.94 Aligned_cols=205 Identities=30% Similarity=0.469 Sum_probs=155.2
Q ss_pred CeEEcCh-hhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971 44 KVIELDE-SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (363)
Q Consensus 44 ~v~~l~~-~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 122 (363)
....+.. ..+...+...++++|.||+|||+||+++.|+|.++++.+++ .+.++.|||+++.++|++|+|.++||+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~---~~~~~~vd~~~~~~~~~~y~i~gfPtl~ 106 (383)
T KOG0191|consen 30 VVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG---KVKIGAVDCDEHKDLCEKYGIQGFPTLK 106 (383)
T ss_pred chhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcC---ceEEEEeCchhhHHHHHhcCCccCcEEE
Confidence 3334444 44444558889999999999999999999999999999987 4999999999999999999999999999
Q ss_pred EEeCC-EEEeecCCCCHHHHHHHHHhhcCCCceecCCh-------HHHHHHHHhcCCcccEEEeecCC-h-------hHH
Q 017971 123 IFMHG-IPTEYYGPRKAELLVRYLKKFVAPDVSILNSD-------AEVSDFVENAGTFFPLFIGFGLD-E-------SVM 186 (363)
Q Consensus 123 ~~~~g-~~~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~-------~~~~~~~~~~~~~~~~~v~~~~~-~-------~~~ 186 (363)
+|.+| .++.|.|.++.+.+.+|+.+.+.+.+...... .++.......+. .+++.|+.. . +.+
T Consensus 107 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~--~~lv~f~aPwc~~ck~l~~~~ 184 (383)
T KOG0191|consen 107 VFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDA--DWLVEFYAPWCGHCKKLAPEW 184 (383)
T ss_pred EEcCCCceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCc--ceEEEEeccccHHhhhcChHH
Confidence 99999 67789999999999999999887554433222 345555544543 467666533 2 346
Q ss_pred HHHHHHhhhhhHHHHh---hhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhcCC
Q 017971 187 SNLALKYKKKAWFAVA---KDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLP 253 (363)
Q Consensus 187 ~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p 253 (363)
.+++..+.....+.++ .+....+...+++..+|++++|+++......|.+..+.+.|..|+++...+
T Consensus 185 ~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 185 EKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred HHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 6666655432212111 123567888999999999999988655356667888999999999998665
No 17
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.84 E-value=4.9e-20 Score=155.46 Aligned_cols=170 Identities=22% Similarity=0.401 Sum_probs=147.3
Q ss_pred hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCC-CCHHHHHHHHHhhcCCCcccCChhh
Q 017971 184 SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-FDEEFLEEFIKQNFLPLSVPINQDT 262 (363)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~-~~~~~l~~fi~~~~~p~~~~lt~~~ 262 (363)
..+.++|..+++.+.|+. ..++++++.++++. |++++|++.++.+..|.|. ++.++|.+||..+++|++.++|.++
T Consensus 10 ~~f~~~A~~~~~~~~F~~--~~~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t~~n 86 (184)
T PF13848_consen 10 EIFEEAAEKLKGDYQFGV--TFNEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPELTPEN 86 (184)
T ss_dssp HHHHHHHHHHTTTSEEEE--EE-HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEESTTH
T ss_pred HHHHHHHHhCcCCcEEEE--EcHHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccccccchhh
Confidence 458888999998876665 44688899999998 9999999977788999998 8999999999999999999999999
Q ss_pred HHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC-CCe
Q 017971 263 LNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN-ENY 340 (363)
Q Consensus 263 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~-~~y 340 (363)
+..+...+.+.+++++.+.+.+..+.+.+.++.+|+++++ +.|+|+|+..+++.++.||+ +..++|.++|++.+ ++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i-~~~~~P~~vi~~~~~~~~ 165 (184)
T PF13848_consen 87 FEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGI-DEDDLPALVIFDSNKGKY 165 (184)
T ss_dssp HHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTT-TTSSSSEEEEEETTTSEE
T ss_pred HHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCC-CCccCCEEEEEECCCCcE
Confidence 9999999988666666666788889999999999999999 99999999999999999999 67899999999965 443
Q ss_pred -eEEEEEEeehhhhhHhh
Q 017971 341 -LTVSINVLKTRVCFFML 357 (363)
Q Consensus 341 -~~~~~~~~~~~~~~~~~ 357 (363)
|.++++++.+.|..|+.
T Consensus 166 ~~~~~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 166 YYLPEGEITPESIEKFLN 183 (184)
T ss_dssp EE--SSCGCHHHHHHHHH
T ss_pred EcCCCCCCCHHHHHHHhc
Confidence 45688999999999985
No 18
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.84 E-value=3.4e-20 Score=140.79 Aligned_cols=100 Identities=39% Similarity=0.725 Sum_probs=90.6
Q ss_pred eEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEE
Q 017971 45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF 124 (363)
Q Consensus 45 v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 124 (363)
++++++++|++.+..+ +++|.||++||++|+.+.|.|+++++.+++....+.++.+||++++.+|++|+|.++||+++|
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 6889999999999765 599999999999999999999999999876334699999999999999999999999999999
Q ss_pred eCCEEE-eecCCCCHHHHHHHH
Q 017971 125 MHGIPT-EYYGPRKAELLVRYL 145 (363)
Q Consensus 125 ~~g~~~-~y~g~~~~~~i~~~i 145 (363)
++|... .|.|.++.+.|.+|+
T Consensus 81 ~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 81 KDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eCCCeeeEeeCCCCHHHHHhhC
Confidence 998754 699999999998885
No 19
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.84 E-value=2.6e-20 Score=143.18 Aligned_cols=99 Identities=40% Similarity=0.728 Sum_probs=89.2
Q ss_pred CeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCcCcCCE
Q 017971 44 KVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFPT 120 (363)
Q Consensus 44 ~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt 120 (363)
.|++|++++|++.+ +.+++++|.||++||++|+++.|.|+++++.+.+ .+.++.+||++ ++++|++|+|.++|+
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~v~~~~~~~~~~~~~~~i~~~Pt 77 (109)
T cd03002 1 PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG---LVQVAAVDCDEDKNKPLCGKYGVQGFPT 77 (109)
T ss_pred CeEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC---CceEEEEecCccccHHHHHHcCCCcCCE
Confidence 37899999999988 4456799999999999999999999999998764 38999999999 899999999999999
Q ss_pred EEEEeCCE------EEeecCCCCHHHHHHHH
Q 017971 121 LKIFMHGI------PTEYYGPRKAELLVRYL 145 (363)
Q Consensus 121 ~~~~~~g~------~~~y~g~~~~~~i~~~i 145 (363)
+++|.+|. ...|.|.++.+.|.+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 78 LKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 99999885 34699999999999997
No 20
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.83 E-value=9.2e-20 Score=138.63 Aligned_cols=99 Identities=44% Similarity=0.780 Sum_probs=89.6
Q ss_pred CeEEcChhhHHHhHcC-CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971 44 KVIELDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (363)
Q Consensus 44 ~v~~l~~~~f~~~l~~-~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 122 (363)
.|.++++++|++.+.+ +++++|.||++||++|+++.|.|.++++.+.+ .+.++.+||++++++|++|+|.++|+++
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~---~~~~~~id~~~~~~~~~~~~i~~~P~~~ 77 (103)
T cd03001 1 DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG---IVKVGAVDADVHQSLAQQYGVRGFPTIK 77 (103)
T ss_pred CeEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CceEEEEECcchHHHHHHCCCCccCEEE
Confidence 3688999999998844 45699999999999999999999999988764 3999999999999999999999999999
Q ss_pred EEeCC--EEEeecCCCCHHHHHHHH
Q 017971 123 IFMHG--IPTEYYGPRKAELLVRYL 145 (363)
Q Consensus 123 ~~~~g--~~~~y~g~~~~~~i~~~i 145 (363)
+|.+| ....|.|.++.+.|.+|+
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EECCCCcceeecCCCCCHHHHHHHh
Confidence 99988 456799999999999997
No 21
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=6.2e-20 Score=142.73 Aligned_cols=105 Identities=36% Similarity=0.553 Sum_probs=96.1
Q ss_pred CCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971 43 GKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (363)
Q Consensus 43 ~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 121 (363)
..+-.++..+|++.+ ++..|++|.|||+||++|+.+.|.+++++.++++. +.++++|.+++.+++.+|+|..+||+
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~~ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEHPELAEDYEISAVPTV 119 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccccchHhhcceeeeeEE
Confidence 356677889999866 88899999999999999999999999999998665 99999999999999999999999999
Q ss_pred EEEeCCEEEe-ecCCCCHHHHHHHHHhhcC
Q 017971 122 KIFMHGIPTE-YYGPRKAELLVRYLKKFVA 150 (363)
Q Consensus 122 ~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~ 150 (363)
++|++|+..+ .-|..+.+.|.+||.+.+.
T Consensus 120 lvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 120 LVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9999999884 8999999999999998754
No 22
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8e-20 Score=157.18 Aligned_cols=106 Identities=31% Similarity=0.622 Sum_probs=99.1
Q ss_pred CCeEEcChhhHHHhH---cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971 43 GKVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP 119 (363)
Q Consensus 43 ~~v~~l~~~~f~~~l---~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 119 (363)
..|+++|+.||++.+ ....|++|.||+|||++|+.+.|.+++++..+++. +.+++|||++++.++..|||+++|
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~p~vAaqfgiqsIP 99 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAEPMVAAQFGVQSIP 99 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcchhHHHHhCcCcCC
Confidence 449999999999977 33359999999999999999999999999988775 999999999999999999999999
Q ss_pred EEEEEeCCEEEe-ecCCCCHHHHHHHHHhhcCC
Q 017971 120 TLKIFMHGIPTE-YYGPRKAELLVRYLKKFVAP 151 (363)
Q Consensus 120 t~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~~ 151 (363)
+++.|++|.++. |.|....+.|.+|+.+..+.
T Consensus 100 tV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 100 TVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred eEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999997 99999999999999999987
No 23
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.82 E-value=1.7e-19 Score=136.79 Aligned_cols=100 Identities=45% Similarity=0.777 Sum_probs=92.0
Q ss_pred cChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971 48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (363)
Q Consensus 48 l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 127 (363)
|++++|++.+.++++++|.||++||++|+++.|.|+++++.+++. ..+.++.+||++++.+|++|+|.++|++++|.+|
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-PDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-CceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 578999999988899999999999999999999999999988653 2599999999999999999999999999999987
Q ss_pred E-EEeecCCCCHHHHHHHHHhh
Q 017971 128 I-PTEYYGPRKAELLVRYLKKF 148 (363)
Q Consensus 128 ~-~~~y~g~~~~~~i~~~i~~~ 148 (363)
+ .+.|.|.++.+.|.+|+.++
T Consensus 80 ~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CcceeecCCCCHHHHHHHHHhc
Confidence 6 67899999999999999875
No 24
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.81 E-value=2.6e-19 Score=137.73 Aligned_cols=100 Identities=25% Similarity=0.352 Sum_probs=88.8
Q ss_pred EEcChhhHHHhH---cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971 46 IELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (363)
Q Consensus 46 ~~l~~~~f~~~l---~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 122 (363)
..++.++|++.+ +.+++++|.||+|||++|+.+.|.|+++++.+.+. ++.++.|||++++.++++++|.++||++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~d~~~~l~~~~~V~~~Pt~~ 84 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNAGHERRLARKLGAHSVPAIV 84 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEeccccHHHHHHcCCccCCEEE
Confidence 456788898644 36789999999999999999999999999998653 4999999999999999999999999999
Q ss_pred EEeCCEEEe-ecCCCCHHHHHHHHHh
Q 017971 123 IFMHGIPTE-YYGPRKAELLVRYLKK 147 (363)
Q Consensus 123 ~~~~g~~~~-y~g~~~~~~i~~~i~~ 147 (363)
+|++|+... +.|..+.+.|.+|+++
T Consensus 85 i~~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 85 GIINGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EEECCEEEEEecCCCCHHHHHHHHhc
Confidence 999998765 5899999999999976
No 25
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.81 E-value=2.6e-19 Score=136.32 Aligned_cols=101 Identities=37% Similarity=0.771 Sum_probs=89.2
Q ss_pred EEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEe
Q 017971 46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM 125 (363)
Q Consensus 46 ~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 125 (363)
++++ ++|++. .++++++|.||++||++|++..|.|+++++.+++.+..+.++.+||++++++|++|+|.++||+++|+
T Consensus 3 ~~~~-~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 3 LDLD-DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLK 80 (104)
T ss_pred eech-hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEc
Confidence 4444 678875 45689999999999999999999999999998654556999999999999999999999999999998
Q ss_pred CCEEEeecCCCCHHHHHHHHHhh
Q 017971 126 HGIPTEYYGPRKAELLVRYLKKF 148 (363)
Q Consensus 126 ~g~~~~y~g~~~~~~i~~~i~~~ 148 (363)
+|....|.|.++.+.|.+|+++.
T Consensus 81 ~~~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 81 GDLAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred CCCceeecCCCCHHHHHHHHHhh
Confidence 88777799999999999999864
No 26
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.81 E-value=2.8e-19 Score=137.23 Aligned_cols=100 Identities=27% Similarity=0.546 Sum_probs=87.8
Q ss_pred CeEEcChhhHHHhH---cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-chhhhhh-CCcCcC
Q 017971 44 KVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-YSRLASK-QEIDAF 118 (363)
Q Consensus 44 ~v~~l~~~~f~~~l---~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-~~~l~~~-~~i~~~ 118 (363)
.|++++.++|++.+ +++++++|.||++||++|+++.|.|.++++.+++ .++.++.|||+. +..+|++ ++++++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~--~~~~~~~vd~d~~~~~~~~~~~~v~~~ 79 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG--SNVKVAKFNADGEQREFAKEELQLKSF 79 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc--CCeEEEEEECCccchhhHHhhcCCCcC
Confidence 58899999999987 3568999999999999999999999999998864 349999999998 5788874 999999
Q ss_pred CEEEEEeCCE--EEeecCC-CCHHHHHHHH
Q 017971 119 PTLKIFMHGI--PTEYYGP-RKAELLVRYL 145 (363)
Q Consensus 119 Pt~~~~~~g~--~~~y~g~-~~~~~i~~~i 145 (363)
||+++|.+|. .+.|.|. ++.+.|++|+
T Consensus 80 Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 PTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999998763 5679995 8999999985
No 27
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.81 E-value=5.5e-19 Score=141.92 Aligned_cols=92 Identities=17% Similarity=0.354 Sum_probs=81.1
Q ss_pred CCCCeEEcChhhHHHhHc--CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc-
Q 017971 41 IDGKVIELDESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA- 117 (363)
Q Consensus 41 ~~~~v~~l~~~~f~~~l~--~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~- 117 (363)
....+.++++++|++.+. .+++++|.||++||++|+.+.|.|+++++.+.+ .++.|++|||+++++++++|+|.+
T Consensus 26 ~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~--~~v~f~~VDvd~~~~la~~~~V~~~ 103 (152)
T cd02962 26 GPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN--NNLKFGKIDIGRFPNVAEKFRVSTS 103 (152)
T ss_pred CCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc--CCeEEEEEECCCCHHHHHHcCceec
Confidence 457899999999999883 346999999999999999999999999988753 249999999999999999999988
Q ss_pred -----CCEEEEEeCCEEEe-ecC
Q 017971 118 -----FPTLKIFMHGIPTE-YYG 134 (363)
Q Consensus 118 -----~Pt~~~~~~g~~~~-y~g 134 (363)
+||+++|++|+.+. +.|
T Consensus 104 ~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 104 PLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCcCCCCEEEEEECCEEEEEEec
Confidence 99999999998774 444
No 28
>PRK10996 thioredoxin 2; Provisional
Probab=99.81 E-value=1.2e-18 Score=139.37 Aligned_cols=106 Identities=25% Similarity=0.532 Sum_probs=97.0
Q ss_pred CCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971 40 KIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP 119 (363)
Q Consensus 40 ~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 119 (363)
..++.++++++++|+++++++++++|.||++||++|+.+.|.+.++++.+.+ ++.++.+|++++++++++|+|.++|
T Consensus 32 ~~~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~~~~l~~~~~V~~~P 108 (139)
T PRK10996 32 LFDGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG---KVRFVKVNTEAERELSARFRIRSIP 108 (139)
T ss_pred cCCCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEeCCCCHHHHHhcCCCccC
Confidence 3466788999999999998899999999999999999999999999987654 4999999999999999999999999
Q ss_pred EEEEEeCCEEEe-ecCCCCHHHHHHHHHhh
Q 017971 120 TLKIFMHGIPTE-YYGPRKAELLVRYLKKF 148 (363)
Q Consensus 120 t~~~~~~g~~~~-y~g~~~~~~i~~~i~~~ 148 (363)
++++|++|+.+. +.|..+.+.|.+|+.+.
T Consensus 109 tlii~~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 109 TIMIFKNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEEEECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 999999998775 79999999999999875
No 29
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.81 E-value=4.5e-19 Score=135.07 Aligned_cols=101 Identities=36% Similarity=0.695 Sum_probs=91.5
Q ss_pred CeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCcCcCCEE
Q 017971 44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFPTL 121 (363)
Q Consensus 44 ~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~ 121 (363)
.++.+++.+|++.++++++++|.||++||++|+++.|.+.++++.+.+ ...+.++.+||+. ++.+|++++|+++|++
T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~ 79 (104)
T cd02997 1 DVVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-DGKGVLAAVDCTKPEHDALKEEYNVKGFPTF 79 (104)
T ss_pred CeEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-CCceEEEEEECCCCccHHHHHhCCCccccEE
Confidence 368899999999998889999999999999999999999999988864 2358999999998 9999999999999999
Q ss_pred EEEeCCEE-EeecCCCCHHHHHHHH
Q 017971 122 KIFMHGIP-TEYYGPRKAELLVRYL 145 (363)
Q Consensus 122 ~~~~~g~~-~~y~g~~~~~~i~~~i 145 (363)
++|++|+. ..|.|..+.+.+.+|+
T Consensus 80 ~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 80 KYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 99999874 4699999999999885
No 30
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.7e-19 Score=166.66 Aligned_cols=214 Identities=20% Similarity=0.351 Sum_probs=135.9
Q ss_pred ccccccCCCCCeEEcChhhHHHhHcCC-CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc--cchhhh
Q 017971 34 EEETKFKIDGKVIELDESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD--KYSRLA 110 (363)
Q Consensus 34 ~~~~~~~~~~~v~~l~~~~f~~~l~~~-~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~--~~~~l~ 110 (363)
+....++++++|+.|+.++|+.++... +.++|+||++|||||++|+|.|+++|+.+.++.+-+.++.|||. .|..+|
T Consensus 30 ~~ptLy~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC 109 (606)
T KOG1731|consen 30 SNPTLYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC 109 (606)
T ss_pred CCCcccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH
Confidence 555667788999999999999999444 59999999999999999999999999999999999999999996 568899
Q ss_pred hhCCcCcCCEEEEEeCCE-E----EeecCCCCHHHHHHHHHhhc-----------CCCceecCCh---HHHHHHHHhcCC
Q 017971 111 SKQEIDAFPTLKIFMHGI-P----TEYYGPRKAELLVRYLKKFV-----------APDVSILNSD---AEVSDFVENAGT 171 (363)
Q Consensus 111 ~~~~i~~~Pt~~~~~~g~-~----~~y~g~~~~~~i~~~i~~~~-----------~~~v~~i~~~---~~~~~~~~~~~~ 171 (363)
++|+|.+||++++|..+. . ..+.|.....++.+.+.+.+ .|....+.+. .++.+.+.+..
T Consensus 110 Ref~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~- 188 (606)
T KOG1731|consen 110 REFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTA- 188 (606)
T ss_pred hhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhccccccc-
Confidence 999999999999997552 1 23566666666666554433 2434444443 34444433222
Q ss_pred cccEEEeec-CChhH-HHHHHHHhhh-hhHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCCC----CHHHHH
Q 017971 172 FFPLFIGFG-LDESV-MSNLALKYKK-KAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPF----DEEFLE 244 (363)
Q Consensus 172 ~~~~~v~~~-~~~~~-~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~----~~~~l~ 244 (363)
.. +-+.+. .+... +..+-..+.. ...+....+....-...++++..|..++++.+... ..+.... -.+.|.
T Consensus 189 ~y-vAiv~e~~~s~lg~~~~l~~l~~~~v~vr~~~d~q~~~~~~l~~~~~~~~llfrnG~~q-~l~~~~~s~~~y~~~I~ 266 (606)
T KOG1731|consen 189 NY-VAIVFETEPSDLGWANLLNDLPSKQVGVRARLDTQNFPLFGLKPDNFPLALLFRNGEQQ-PLWPSSSSRSAYVKKID 266 (606)
T ss_pred ce-eEEEEecCCcccHHHHHHhhccCCCcceEEEecchhccccccCCCCchhhhhhcCCccc-ccccccccHHHHHHHHH
Confidence 22 223332 22222 2222221111 11111111111111222677778888888874322 2222222 347777
Q ss_pred HHHHhh
Q 017971 245 EFIKQN 250 (363)
Q Consensus 245 ~fi~~~ 250 (363)
++|-+.
T Consensus 267 ~~lg~~ 272 (606)
T KOG1731|consen 267 DLLGDK 272 (606)
T ss_pred HHhcCc
Confidence 887665
No 31
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.80 E-value=3.2e-19 Score=134.26 Aligned_cols=84 Identities=24% Similarity=0.486 Sum_probs=77.1
Q ss_pred cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-cchhhhhhCCcCcCCEEEEEeCCEEEeecCCC
Q 017971 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-KYSRLASKQEIDAFPTLKIFMHGIPTEYYGPR 136 (363)
Q Consensus 58 ~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~ 136 (363)
.++++++|.|||+||++|+++.|.|+++++.+.+ +.++.||++ +++.++++|+|.++||+++|++|...+|.|.+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~ 91 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNGTR 91 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCCCCHHHHHhcCCeecCEEEEEcCCceeEecCCC
Confidence 5678999999999999999999999999998753 778999999 89999999999999999999999666799999
Q ss_pred CHHHHHHHH
Q 017971 137 KAELLVRYL 145 (363)
Q Consensus 137 ~~~~i~~~i 145 (363)
+.+.|.+|+
T Consensus 92 ~~~~l~~f~ 100 (100)
T cd02999 92 TLDSLAAFY 100 (100)
T ss_pred CHHHHHhhC
Confidence 999999985
No 32
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.80 E-value=5.4e-19 Score=134.61 Aligned_cols=100 Identities=41% Similarity=0.724 Sum_probs=88.7
Q ss_pred CeEEcChhhHHHhHcC-CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971 44 KVIELDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (363)
Q Consensus 44 ~v~~l~~~~f~~~l~~-~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 122 (363)
.|.+|+.++|++.+.+ +++++|.||++||++|+.+.|.|+++++.+++ ..++.++.+||+++ +++..+++.++|+++
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-DDNVVIAKMDATAN-DVPSEFVVDGFPTIL 78 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-CCCEEEEEEeCcch-hhhhhccCCCCCEEE
Confidence 3789999999998844 58999999999999999999999999998865 34699999999987 588899999999999
Q ss_pred EEeCCE---EEeecCCCCHHHHHHHH
Q 017971 123 IFMHGI---PTEYYGPRKAELLVRYL 145 (363)
Q Consensus 123 ~~~~g~---~~~y~g~~~~~~i~~~i 145 (363)
+|++|. ...|.|.++.+.|.+||
T Consensus 79 ~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 79 FFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEcCCCcCCceEccCCcCHHHHHhhC
Confidence 999876 45699999999999985
No 33
>PRK09381 trxA thioredoxin; Provisional
Probab=99.80 E-value=1.8e-18 Score=132.85 Aligned_cols=104 Identities=35% Similarity=0.585 Sum_probs=94.3
Q ss_pred CCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971 43 GKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (363)
Q Consensus 43 ~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 121 (363)
+.|+++++++|++.+ +.+++++|.||++||++|+.+.|.|+++++.+.+ ++.++.+||+.++.++++|++.++|++
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTL 79 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC---CcEEEEEECCCChhHHHhCCCCcCCEE
Confidence 578999999999854 6678999999999999999999999999998754 499999999999999999999999999
Q ss_pred EEEeCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971 122 KIFMHGIPT-EYYGPRKAELLVRYLKKFV 149 (363)
Q Consensus 122 ~~~~~g~~~-~y~g~~~~~~i~~~i~~~~ 149 (363)
++|++|+.+ .+.|..+.+.|..|+..++
T Consensus 80 ~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 999999876 5889999999999998765
No 34
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.79 E-value=1.4e-18 Score=130.37 Aligned_cols=91 Identities=32% Similarity=0.514 Sum_probs=82.0
Q ss_pred hHHHhH-cC-CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEE
Q 017971 52 NFDSAI-SS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIP 129 (363)
Q Consensus 52 ~f~~~l-~~-~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 129 (363)
+|++.+ +. +++++|.||++||++|+++.|.+.++++.+.+ .+.++.+||++++.+|++|+|.++|++++|++|+.
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG---QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC---cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 577777 33 57999999999999999999999999988754 39999999999999999999999999999999987
Q ss_pred E-eecCCCCHHHHHHHH
Q 017971 130 T-EYYGPRKAELLVRYL 145 (363)
Q Consensus 130 ~-~y~g~~~~~~i~~~i 145 (363)
+ .|.|..+.+.|..|+
T Consensus 79 ~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 79 VDGFQGAQPEEQLRQML 95 (96)
T ss_pred eeeecCCCCHHHHHHHh
Confidence 6 499999999999987
No 35
>PHA02278 thioredoxin-like protein
Probab=99.79 E-value=1.7e-18 Score=130.16 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=81.4
Q ss_pred hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc----hhhhhhCCcCcCCEEEEEe
Q 017971 50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----SRLASKQEIDAFPTLKIFM 125 (363)
Q Consensus 50 ~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~ 125 (363)
.++|++.++++++++|.|||+||++|+...|.++++++.+.. ++.|..+|++.+ ++++++|+|.++||+++|+
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 578999998899999999999999999999999999876433 367899999986 6899999999999999999
Q ss_pred CCEEEe-ecCCCCHHHHHHH
Q 017971 126 HGIPTE-YYGPRKAELLVRY 144 (363)
Q Consensus 126 ~g~~~~-y~g~~~~~~i~~~ 144 (363)
+|+.+. ..|..+.+.|.+|
T Consensus 81 ~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CCEEEEEEeCCCCHHHHHhh
Confidence 998875 7898888888776
No 36
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.78 E-value=1.5e-18 Score=132.34 Aligned_cols=101 Identities=49% Similarity=0.899 Sum_probs=89.5
Q ss_pred CeEEcChhhHHHhHcCC-CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-chhhhhhCCcCcCCEE
Q 017971 44 KVIELDESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-YSRLASKQEIDAFPTL 121 (363)
Q Consensus 44 ~v~~l~~~~f~~~l~~~-~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~Pt~ 121 (363)
.+.++++++|++.+.+. ++++|.||++||++|+++.|.|.++++.++. ..++.++.+||++ ++.+|++++|.++|++
T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~i~~~P~~ 79 (105)
T cd02998 1 NVVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-EDDVVIAKVDADEANKDLAKKYGVSGFPTL 79 (105)
T ss_pred CeEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-CCCEEEEEEECCCcchhhHHhCCCCCcCEE
Confidence 36789999999988654 4999999999999999999999999998862 3459999999999 9999999999999999
Q ss_pred EEEeCC--EEEeecCCCCHHHHHHHH
Q 017971 122 KIFMHG--IPTEYYGPRKAELLVRYL 145 (363)
Q Consensus 122 ~~~~~g--~~~~y~g~~~~~~i~~~i 145 (363)
++|.+| ....|.|.++.+.|.+|+
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 80 KFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEeCCCCCccccCCccCHHHHHhhC
Confidence 999877 345699999999999985
No 37
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.77 E-value=7.8e-18 Score=127.50 Aligned_cols=96 Identities=21% Similarity=0.394 Sum_probs=84.5
Q ss_pred cChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971 48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (363)
Q Consensus 48 l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 127 (363)
-+.++|+++++++++++|.|||+||++|+.+.|.+.++++.+.+ ..+.|+.+|++ +++++++|+|+++||+++|++|
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~--~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD--DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC--CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence 46789999998899999999999999999999999999988753 24889999999 7889999999999999999999
Q ss_pred EEEe-ecCCCCHHHHHHHHHh
Q 017971 128 IPTE-YYGPRKAELLVRYLKK 147 (363)
Q Consensus 128 ~~~~-y~g~~~~~~i~~~i~~ 147 (363)
+.+. ..| .+.+.+.+++.+
T Consensus 82 ~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 82 ELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEEEEec-CChHHHHHHHhh
Confidence 8876 455 588888888864
No 38
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.77 E-value=2.9e-18 Score=129.46 Aligned_cols=98 Identities=43% Similarity=0.830 Sum_probs=88.8
Q ss_pred EcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC
Q 017971 47 ELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH 126 (363)
Q Consensus 47 ~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 126 (363)
++++++|.+.+.++++++|.||++||++|+.+.|.|.++++.++ ....+.++.+||++++.+|++|+|.++|++++|.+
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELK-GDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhc-cCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 67899999999888899999999999999999999999999884 13459999999999999999999999999999998
Q ss_pred C--EEEeecCCCCHHHHHHHH
Q 017971 127 G--IPTEYYGPRKAELLVRYL 145 (363)
Q Consensus 127 g--~~~~y~g~~~~~~i~~~i 145 (363)
| ...+|.|..+.+.|.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 7 455799999999999884
No 39
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.76 E-value=8.9e-18 Score=129.58 Aligned_cols=99 Identities=34% Similarity=0.577 Sum_probs=83.2
Q ss_pred CCeEEcChhhHHHhHcC-CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCcCcCC
Q 017971 43 GKVIELDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFP 119 (363)
Q Consensus 43 ~~v~~l~~~~f~~~l~~-~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P 119 (363)
+.+++++.++|++.+.+ +++++|.||++||++|+.+.|.|+++++.+++..+.+.++.+||+. ++++|++|+|+++|
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P 80 (114)
T cd02992 1 DPVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYP 80 (114)
T ss_pred CCeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCC
Confidence 36899999999999854 4699999999999999999999999999887654569999999964 67899999999999
Q ss_pred EEEEEeCCEEE-----eecCC-CCHHHH
Q 017971 120 TLKIFMHGIPT-----EYYGP-RKAELL 141 (363)
Q Consensus 120 t~~~~~~g~~~-----~y~g~-~~~~~i 141 (363)
|+++|++|... .|.|. +..+++
T Consensus 81 t~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 81 TLRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred EEEEECCCCccCCCCCcccCCccCHHHH
Confidence 99999988633 36675 554444
No 40
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.75 E-value=7.7e-18 Score=127.48 Aligned_cols=84 Identities=21% Similarity=0.285 Sum_probs=74.0
Q ss_pred hhhHHHhHc--CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971 50 ESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (363)
Q Consensus 50 ~~~f~~~l~--~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 127 (363)
.++|++.+. .+++++|.|||+||++|+.+.|.++++++++.+. +.|++||++++++++++|+|.+.||+++|++|
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence 467888885 5689999999999999999999999999987543 89999999999999999999999999999999
Q ss_pred EEEe-ecCCC
Q 017971 128 IPTE-YYGPR 136 (363)
Q Consensus 128 ~~~~-y~g~~ 136 (363)
+.+. ..|..
T Consensus 79 ~~v~~~~G~~ 88 (114)
T cd02954 79 KHMKIDLGTG 88 (114)
T ss_pred EEEEEEcCCC
Confidence 8775 44533
No 41
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.74 E-value=4.2e-17 Score=123.28 Aligned_cols=98 Identities=36% Similarity=0.621 Sum_probs=87.2
Q ss_pred cChhhHHHhHcC-CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC
Q 017971 48 LDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH 126 (363)
Q Consensus 48 l~~~~f~~~l~~-~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 126 (363)
++.++|.+.+++ +++++|.||++||++|+.+.|.+.++++.+.+ ++.|+.+||++++.++++|+|.++|++++|++
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~ 77 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKN 77 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeC
Confidence 467889998855 45999999999999999999999999987753 49999999999999999999999999999999
Q ss_pred CEEE-eecCCCCHHHHHHHHHhh
Q 017971 127 GIPT-EYYGPRKAELLVRYLKKF 148 (363)
Q Consensus 127 g~~~-~y~g~~~~~~i~~~i~~~ 148 (363)
|+.. .+.|..+.+.+.+|+++.
T Consensus 78 g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 78 GKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred CcEeeeecCCCCHHHHHHHHHhh
Confidence 8766 478999999999999875
No 42
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.73 E-value=1.3e-16 Score=137.50 Aligned_cols=189 Identities=21% Similarity=0.209 Sum_probs=128.6
Q ss_pred hhHHHhHcCCCeEEEEEEC---CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971 51 SNFDSAISSFDYILVDFYA---PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (363)
Q Consensus 51 ~~f~~~l~~~~~~lv~fy~---~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 127 (363)
..|.+.++ ++..++.|++ +||++|+.+.|.++++++.+.+ -.+.+..+|.+++++++++|+|.++||+++|++|
T Consensus 11 ~~~~~~~~-~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g 87 (215)
T TIGR02187 11 ELFLKELK-NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEG 87 (215)
T ss_pred HHHHHhcC-CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCCcccHHHHHHcCCCccCEEEEEeCC
Confidence 33344343 4566777988 9999999999999999987742 1366777777799999999999999999999999
Q ss_pred EEE--eecCCCCHHHHHHHHHhhcC--CCceecCChHHHHHHHHhcCCcccEEEeecCC-hh---H----HHHHHHHhhh
Q 017971 128 IPT--EYYGPRKAELLVRYLKKFVA--PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-ES---V----MSNLALKYKK 195 (363)
Q Consensus 128 ~~~--~y~g~~~~~~i~~~i~~~~~--~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~-~~---~----~~~~a~~~~~ 195 (363)
..+ +|.|..+.+.+.+|+...++ .....+ +.... +.++..+.. +.++.|... .+ . +..++....+
T Consensus 88 ~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L-~~~~~-~~l~~~~~p-v~I~~F~a~~C~~C~~~~~~l~~l~~~~~~ 164 (215)
T TIGR02187 88 KDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGL-SEKTV-ELLQSLDEP-VRIEVFVTPTCPYCPYAVLMAHKFALANDK 164 (215)
T ss_pred eeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCC-CHHHH-HHHHhcCCC-cEEEEEECCCCCCcHHHHHHHHHHHHhcCc
Confidence 875 58999999999999988853 223334 32323 333333322 334435433 22 2 3333333211
Q ss_pred hhHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHh
Q 017971 196 KAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQ 249 (363)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~ 249 (363)
.....+..+..++++.+|++.+.|++++++.. . .+.|....+++.+|+.+
T Consensus 165 i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~--~--~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 165 ILGEMIEANENPDLAEKYGVMSVPKIVINKGV--E--EFVGAYPEEQFLEYILS 214 (215)
T ss_pred eEEEEEeCCCCHHHHHHhCCccCCEEEEecCC--E--EEECCCCHHHHHHHHHh
Confidence 11111223456788999999999999998542 2 27788899999999875
No 43
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.73 E-value=4.1e-17 Score=122.60 Aligned_cols=97 Identities=16% Similarity=0.081 Sum_probs=87.8
Q ss_pred CCeEEcChhhHHHhHcCCCeEEEEEECCC--ChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCE
Q 017971 43 GKVIELDESNFDSAISSFDYILVDFYAPW--CGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT 120 (363)
Q Consensus 43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~--C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 120 (363)
.+.-.+|..||++.+..+++.+|.||++| |++|+.+.|.++++++++.+. +.|+++|++++++++.+|+|+++||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~~~la~~f~V~sIPT 86 (111)
T cd02965 10 HGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADEQALAARFGVLRTPA 86 (111)
T ss_pred cCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCCHHHHHHcCCCcCCE
Confidence 45677899999999988899999999997 999999999999999987654 8999999999999999999999999
Q ss_pred EEEEeCCEEEe-ecCCCCHHHHH
Q 017971 121 LKIFMHGIPTE-YYGPRKAELLV 142 (363)
Q Consensus 121 ~~~~~~g~~~~-y~g~~~~~~i~ 142 (363)
+++|++|+.+. ..|..+.+++.
T Consensus 87 li~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 87 LLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEECCEEEEEEeCccCHHHHh
Confidence 99999998874 78988777664
No 44
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.73 E-value=6.4e-17 Score=122.67 Aligned_cols=94 Identities=16% Similarity=0.266 Sum_probs=79.0
Q ss_pred ChhhHHHhHcC--CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch---hhhhhCCcCcCCEEEE
Q 017971 49 DESNFDSAISS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS---RLASKQEIDAFPTLKI 123 (363)
Q Consensus 49 ~~~~f~~~l~~--~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~Pt~~~ 123 (363)
+.++|++.+.+ +++++|.|||+||++|+.+.|.++++++.+ +++.|+.||++++. +++++|+|.++||+++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~----~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 77 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC----NDVVFLLVNGDENDSTMELCRREKIIEVPHFLF 77 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC----CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEE
Confidence 45788888843 789999999999999999999999999887 24899999999874 8999999999999999
Q ss_pred EeCCEEE-eecCCCCHHHHHHHHHh
Q 017971 124 FMHGIPT-EYYGPRKAELLVRYLKK 147 (363)
Q Consensus 124 ~~~g~~~-~y~g~~~~~~i~~~i~~ 147 (363)
|++|+.+ .+.| ...+.|.+-+.+
T Consensus 78 ~~~G~~v~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 78 YKDGEKIHEEEG-IGPDELIGDVLY 101 (103)
T ss_pred EeCCeEEEEEeC-CCHHHHHHHHHh
Confidence 9999876 4778 445666665543
No 45
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.72 E-value=7.9e-17 Score=124.38 Aligned_cols=88 Identities=27% Similarity=0.448 Sum_probs=78.7
Q ss_pred CCCeEEcChhhHHHhHcCC---CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcC
Q 017971 42 DGKVIELDESNFDSAISSF---DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF 118 (363)
Q Consensus 42 ~~~v~~l~~~~f~~~l~~~---~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 118 (363)
.+.+.++++++|.+.+.+. ++++|.||+|||++|+.+.|.++++++.+. ++.|++||++++ .++++|+|.++
T Consensus 3 ~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~----~v~f~~vd~~~~-~l~~~~~i~~~ 77 (113)
T cd02957 3 FGEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP----ETKFVKINAEKA-FLVNYLDIKVL 77 (113)
T ss_pred CceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC----CcEEEEEEchhh-HHHHhcCCCcC
Confidence 3678899999999988554 799999999999999999999999998764 388999999999 99999999999
Q ss_pred CEEEEEeCCEEEe-ecC
Q 017971 119 PTLKIFMHGIPTE-YYG 134 (363)
Q Consensus 119 Pt~~~~~~g~~~~-y~g 134 (363)
||+++|++|+.+. +.|
T Consensus 78 Pt~~~f~~G~~v~~~~G 94 (113)
T cd02957 78 PTLLVYKNGELIDNIVG 94 (113)
T ss_pred CEEEEEECCEEEEEEec
Confidence 9999999998774 555
No 46
>PLN02309 5'-adenylylsulfate reductase
Probab=99.72 E-value=5.6e-17 Score=151.91 Aligned_cols=106 Identities=25% Similarity=0.525 Sum_probs=94.1
Q ss_pred CCCCeEEcChhhHHHhH---cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-cchhhhh-hCCc
Q 017971 41 IDGKVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-KYSRLAS-KQEI 115 (363)
Q Consensus 41 ~~~~v~~l~~~~f~~~l---~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-~~~~l~~-~~~i 115 (363)
....|+.|+.++|++.+ +.+++++|.||+|||++|+.+.|.|+++++.+.+. ++.|+++||+ .+.++|+ +|+|
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~--~V~f~kVD~d~~~~~la~~~~~I 420 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS--GVKVAKFRADGDQKEFAKQELQL 420 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CeEEEEEECCCcchHHHHhhCCC
Confidence 55689999999999987 46789999999999999999999999999988643 5999999999 8888997 6999
Q ss_pred CcCCEEEEEeCCE--EEeecC-CCCHHHHHHHHHhh
Q 017971 116 DAFPTLKIFMHGI--PTEYYG-PRKAELLVRYLKKF 148 (363)
Q Consensus 116 ~~~Pt~~~~~~g~--~~~y~g-~~~~~~i~~~i~~~ 148 (363)
.++||+++|++|. ++.|.| .++.+.|++|++..
T Consensus 421 ~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 421 GSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999999998764 567985 79999999999864
No 47
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.72 E-value=5.3e-17 Score=152.10 Aligned_cols=106 Identities=25% Similarity=0.474 Sum_probs=92.2
Q ss_pred CCCCeEEcChhhHHHhHc---CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch-hhh-hhCCc
Q 017971 41 IDGKVIELDESNFDSAIS---SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-RLA-SKQEI 115 (363)
Q Consensus 41 ~~~~v~~l~~~~f~~~l~---~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-~l~-~~~~i 115 (363)
....|++|+.+||++.++ .+++++|.||||||++|+.+.|.|+++++.+.+. .+.|+.|||+.+. .++ ++|+|
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~--~v~~~kVdvD~~~~~~~~~~~~I 426 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS--GVKVAKFRADGDQKEFAKQELQL 426 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CcEEEEEECCCCccHHHHHHcCC
Confidence 456899999999999985 7789999999999999999999999999988643 3899999999764 454 78999
Q ss_pred CcCCEEEEEeCCE--EEeec-CCCCHHHHHHHHHhh
Q 017971 116 DAFPTLKIFMHGI--PTEYY-GPRKAELLVRYLKKF 148 (363)
Q Consensus 116 ~~~Pt~~~~~~g~--~~~y~-g~~~~~~i~~~i~~~ 148 (363)
.++||+++|++|. ++.|. |.++.+.|+.|++..
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred CccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 9999999999874 56797 589999999999753
No 48
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.6e-17 Score=154.50 Aligned_cols=105 Identities=40% Similarity=0.680 Sum_probs=94.4
Q ss_pred CCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971 43 GKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (363)
Q Consensus 43 ~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 121 (363)
+.|..+-.+||+.++ +..+-+||.||||||+||++++|.|+++|+.+++ ..++.++++|.+.|.- ....+.++|||
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~-~~~vviAKmDaTaNd~--~~~~~~~fPTI 442 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKD-DENVVIAKMDATANDV--PSLKVDGFPTI 442 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcC-CCCcEEEEeccccccC--ccccccccceE
Confidence 579999999999987 7778999999999999999999999999999987 6689999999998863 45677889999
Q ss_pred EEEeCCE---EEeecCCCCHHHHHHHHHhhcC
Q 017971 122 KIFMHGI---PTEYYGPRKAELLVRYLKKFVA 150 (363)
Q Consensus 122 ~~~~~g~---~~~y~g~~~~~~i~~~i~~~~~ 150 (363)
++|+.|. ++.|.|.|+.+++..|+.+...
T Consensus 443 ~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 443 LFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred EEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 9998764 6789999999999999998876
No 49
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.71 E-value=2e-16 Score=121.65 Aligned_cols=99 Identities=27% Similarity=0.384 Sum_probs=84.6
Q ss_pred CCeEEcCh-hhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971 43 GKVIELDE-SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (363)
Q Consensus 43 ~~v~~l~~-~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 121 (363)
+.+..+++ ++|.+.+.++++++|.||+|||++|+...|.++++++.+. ++.|.+||++++++++++|+|.++||+
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~----~i~f~~Vd~~~~~~l~~~~~v~~vPt~ 79 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL----ETKFIKVNAEKAPFLVEKLNIKVLPTV 79 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC----CCEEEEEEcccCHHHHHHCCCccCCEE
Confidence 56788877 8999999888999999999999999999999999998753 389999999999999999999999999
Q ss_pred EEEeCCEEEe-ecC--------CCCHHHHHHHH
Q 017971 122 KIFMHGIPTE-YYG--------PRKAELLVRYL 145 (363)
Q Consensus 122 ~~~~~g~~~~-y~g--------~~~~~~i~~~i 145 (363)
++|++|+.+. +.| ..+.+++..|+
T Consensus 80 l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 80 ILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 9999998663 333 34455555554
No 50
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.69 E-value=3.9e-16 Score=117.19 Aligned_cols=94 Identities=22% Similarity=0.468 Sum_probs=80.3
Q ss_pred ChhhHHHhHcCC--CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC
Q 017971 49 DESNFDSAISSF--DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH 126 (363)
Q Consensus 49 ~~~~f~~~l~~~--~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 126 (363)
+.++|++.+... ++++|.||++||++|+++.|.++++++.+ ...+.++.+|++++++++++|++.++||+++|++
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~---~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEA---FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRN 77 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh---CCceEEEEEccccCHHHHHhcCCccccEEEEEEC
Confidence 357888888665 89999999999999999999999999886 3359999999999999999999999999999999
Q ss_pred CEEEeecCCCCHHHHHHHH
Q 017971 127 GIPTEYYGPRKAELLVRYL 145 (363)
Q Consensus 127 g~~~~y~g~~~~~~i~~~i 145 (363)
|+.+....+...+.|.+.+
T Consensus 78 g~~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 78 GTIVDRVSGADPKELAKKV 96 (97)
T ss_pred CEEEEEEeCCCHHHHHHhh
Confidence 9887643335667776654
No 51
>PTZ00102 disulphide isomerase; Provisional
Probab=99.68 E-value=3.8e-16 Score=151.37 Aligned_cols=112 Identities=28% Similarity=0.522 Sum_probs=100.1
Q ss_pred CCCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971 41 IDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP 119 (363)
Q Consensus 41 ~~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 119 (363)
.++.+..++.++|++.+ +.+++++|.|||+||++|+++.|.|+++++.+++ ...+.++.+||+.+...|++++++++|
T Consensus 355 ~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~v~~~~id~~~~~~~~~~~~v~~~P 433 (477)
T PTZ00102 355 QDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD-NDSIIVAKMNGTANETPLEEFSWSAFP 433 (477)
T ss_pred CCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCcEEEEEEECCCCccchhcCCCcccC
Confidence 36679999999999985 7778999999999999999999999999988765 346999999999999999999999999
Q ss_pred EEEEEeCCEE--EeecCCCCHHHHHHHHHhhcCCCc
Q 017971 120 TLKIFMHGIP--TEYYGPRKAELLVRYLKKFVAPDV 153 (363)
Q Consensus 120 t~~~~~~g~~--~~y~g~~~~~~i~~~i~~~~~~~v 153 (363)
|+++|++|.. ..|.|.++.+.|.+|+.++...+.
T Consensus 434 t~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~ 469 (477)
T PTZ00102 434 TILFVKAGERTPIPYEGERTVEGFKEFVNKHATNPF 469 (477)
T ss_pred eEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCCc
Confidence 9999998754 479999999999999999986433
No 52
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.67 E-value=3.4e-16 Score=119.10 Aligned_cols=92 Identities=23% Similarity=0.308 Sum_probs=80.6
Q ss_pred hhHHHhHcCCCeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEeCcc----chhhhhhCCcCcCCEEEE
Q 017971 51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADK----YSRLASKQEIDAFPTLKI 123 (363)
Q Consensus 51 ~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~~ 123 (363)
+.|+++++++++++|.||++||++|+++.|.+ .++++.+.+ ++.++.+|+++ .++++++|+|.++||+++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 57888898999999999999999999999998 577777754 49999999987 678999999999999999
Q ss_pred Ee--CCEE-EeecCCCCHHHHHHHH
Q 017971 124 FM--HGIP-TEYYGPRKAELLVRYL 145 (363)
Q Consensus 124 ~~--~g~~-~~y~g~~~~~~i~~~i 145 (363)
|+ +|+. ..+.|..+.++|.+++
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHh
Confidence 98 5654 4589999999998876
No 53
>PTZ00051 thioredoxin; Provisional
Probab=99.66 E-value=9.9e-16 Score=115.22 Aligned_cols=92 Identities=37% Similarity=0.729 Sum_probs=78.9
Q ss_pred EEc-ChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEE
Q 017971 46 IEL-DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF 124 (363)
Q Consensus 46 ~~l-~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 124 (363)
.++ +.++++++++.+++++|.||++||++|+.+.|.++++++.+. ++.++.+|++++..++++|++.++|++++|
T Consensus 3 ~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 78 (98)
T PTZ00051 3 HIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDELSEVAEKENITSMPTFKVF 78 (98)
T ss_pred EEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcchHHHHHHCCCceeeEEEEE
Confidence 344 457889999888999999999999999999999999998643 389999999999999999999999999999
Q ss_pred eCCEEEe-ecCCCCHHHHH
Q 017971 125 MHGIPTE-YYGPRKAELLV 142 (363)
Q Consensus 125 ~~g~~~~-y~g~~~~~~i~ 142 (363)
++|+.+. +.|. ..++|.
T Consensus 79 ~~g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 79 KNGSVVDTLLGA-NDEALK 96 (98)
T ss_pred eCCeEEEEEeCC-CHHHhh
Confidence 9998774 7774 455543
No 54
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.1e-15 Score=113.42 Aligned_cols=84 Identities=33% Similarity=0.648 Sum_probs=71.7
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEe-ecCCCC
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPRK 137 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~-y~g~~~ 137 (363)
.+++++|.|||+||++|+...|.+.+++.++.+ +.|.+||++++.++|++++|+..||+.+|++|+.+. +.|...
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~ 95 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK 95 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCH
Confidence 358999999999999999999999999987643 999999999999999999999999999999998764 677543
Q ss_pred HHHHHHHHHh
Q 017971 138 AELLVRYLKK 147 (363)
Q Consensus 138 ~~~i~~~i~~ 147 (363)
. .+.+.+.+
T Consensus 96 ~-~l~~~i~~ 104 (106)
T KOG0907|consen 96 A-ELEKKIAK 104 (106)
T ss_pred H-HHHHHHHh
Confidence 3 55555443
No 55
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.65 E-value=3e-15 Score=117.87 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=78.2
Q ss_pred ChhhHHHhH--cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE-EEe
Q 017971 49 DESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK-IFM 125 (363)
Q Consensus 49 ~~~~f~~~l--~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~-~~~ 125 (363)
+..++++.+ .++++++|.|||+||++|+...|.++++++++.+. +.|++||++++++++++|+|++.|+++ +|+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk 86 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEVPDFNTMYELYDPCTVMFFFR 86 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCCHHHHHHcCccCCCcEEEEEE
Confidence 367899988 45679999999999999999999999999987554 889999999999999999999776666 999
Q ss_pred CCE-EEe-ecC--------CCCHHHHHHHHHhh
Q 017971 126 HGI-PTE-YYG--------PRKAELLVRYLKKF 148 (363)
Q Consensus 126 ~g~-~~~-y~g--------~~~~~~i~~~i~~~ 148 (363)
+|+ .+. ..| ..+.+++++-+...
T Consensus 87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred CCeEEEEEecccccccccccCCHHHHHHHHHHH
Confidence 998 554 456 34455555544433
No 56
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.64 E-value=2.5e-15 Score=120.43 Aligned_cols=98 Identities=21% Similarity=0.432 Sum_probs=82.5
Q ss_pred hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCcCcCCEEEEEe-C
Q 017971 50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFPTLKIFM-H 126 (363)
Q Consensus 50 ~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~-~ 126 (363)
...+++++..+++++|.||++||++|+.+.|.+.++++.+.+. +.|..||.+. ...++++|+|.++|++++|. +
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence 4567788888899999999999999999999999999887542 5666666554 46899999999999999995 7
Q ss_pred CEEE-eecCCCCHHHHHHHHHhhcC
Q 017971 127 GIPT-EYYGPRKAELLVRYLKKFVA 150 (363)
Q Consensus 127 g~~~-~y~g~~~~~~i~~~i~~~~~ 150 (363)
|+.+ .+.|....+.|.+++.+...
T Consensus 87 G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 87 GNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 8766 47899999999999988764
No 57
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.64 E-value=3.3e-15 Score=112.07 Aligned_cols=86 Identities=22% Similarity=0.384 Sum_probs=78.2
Q ss_pred cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEe-ecCCC
Q 017971 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPR 136 (363)
Q Consensus 58 ~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~-y~g~~ 136 (363)
+.+++++|.||++||+.|+...|.++++++.+.+ ++.+..+|++++++++++++|.++|++++|++|+.+. +.|..
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~ 87 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG---AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVK 87 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC---ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCc
Confidence 6778999999999999999999999999988754 4999999999999999999999999999999998764 88999
Q ss_pred CHHHHHHHHH
Q 017971 137 KAELLVRYLK 146 (363)
Q Consensus 137 ~~~~i~~~i~ 146 (363)
+.+.+.+|++
T Consensus 88 ~~~~~~~~l~ 97 (97)
T cd02949 88 MKSEYREFIE 97 (97)
T ss_pred cHHHHHHhhC
Confidence 9999988863
No 58
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.62 E-value=5.8e-15 Score=109.27 Aligned_cols=91 Identities=35% Similarity=0.639 Sum_probs=81.5
Q ss_pred hhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEE
Q 017971 51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPT 130 (363)
Q Consensus 51 ~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 130 (363)
++|++.++++++++|.||++||++|+.+.|.+.++++. .+++.++.+||++++.+++++++.++|++++|.+|+.+
T Consensus 1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 76 (93)
T cd02947 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE----YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEV 76 (93)
T ss_pred CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH----CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEE
Confidence 36788887779999999999999999999999999876 23599999999999999999999999999999999865
Q ss_pred -eecCCCCHHHHHHHH
Q 017971 131 -EYYGPRKAELLVRYL 145 (363)
Q Consensus 131 -~y~g~~~~~~i~~~i 145 (363)
.+.|..+.+.|.+|+
T Consensus 77 ~~~~g~~~~~~l~~~i 92 (93)
T cd02947 77 DRVVGADPKEELEEFL 92 (93)
T ss_pred EEEecCCCHHHHHHHh
Confidence 488988889998886
No 59
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.61 E-value=1.1e-14 Score=120.49 Aligned_cols=101 Identities=27% Similarity=0.334 Sum_probs=84.1
Q ss_pred CCCeEEcCh-hhHHHhHcCC---CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc
Q 017971 42 DGKVIELDE-SNFDSAISSF---DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA 117 (363)
Q Consensus 42 ~~~v~~l~~-~~f~~~l~~~---~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~ 117 (363)
-+.+.++++ ++|.+.+.+. .+++|.||++||++|+.+.|.+.++|+.+. .+.|++||+++. .++.+|+|.+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d~~-~l~~~f~v~~ 135 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRASAT-GASDEFDTDA 135 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEeccch-hhHHhCCCCC
Confidence 578899999 9999998543 399999999999999999999999998753 399999999987 8999999999
Q ss_pred CCEEEEEeCCEEEe-ecC-------CCCHHHHHHHHHh
Q 017971 118 FPTLKIFMHGIPTE-YYG-------PRKAELLVRYLKK 147 (363)
Q Consensus 118 ~Pt~~~~~~g~~~~-y~g-------~~~~~~i~~~i~~ 147 (363)
.||+++|++|+.+. ..| ..+.+.|..|+.+
T Consensus 136 vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 136 LPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 99999999998764 333 3455556555543
No 60
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.60 E-value=9.5e-15 Score=109.64 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=70.8
Q ss_pred hhhHHHhHc--CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971 50 ESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (363)
Q Consensus 50 ~~~f~~~l~--~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 127 (363)
.+.+++.+. ++++++|.|+|+||++|+...|.++++|+++.+. +.|+.||.++.+++++.|+|...||+++|++|
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev~dva~~y~I~amPtfvffkng 78 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKVPVYTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccccHHHHHhcCceeCcEEEEEECC
Confidence 356777774 5789999999999999999999999999987543 99999999999999999999999999999999
Q ss_pred EEEe
Q 017971 128 IPTE 131 (363)
Q Consensus 128 ~~~~ 131 (363)
+.+.
T Consensus 79 kh~~ 82 (114)
T cd02986 79 QHMK 82 (114)
T ss_pred cEEE
Confidence 8664
No 61
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.59 E-value=1.4e-14 Score=139.87 Aligned_cols=112 Identities=36% Similarity=0.629 Sum_probs=97.2
Q ss_pred CCCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971 41 IDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP 119 (363)
Q Consensus 41 ~~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 119 (363)
.++.+..|+.++|++.+ +.++.++|.||++||++|+.+.|.|+++++.+++....+.++.+||+.+. ++. ++++++|
T Consensus 344 ~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~P 421 (462)
T TIGR01130 344 DEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFP 421 (462)
T ss_pred CCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccC
Confidence 45689999999999987 66789999999999999999999999999998764336999999999875 334 9999999
Q ss_pred EEEEEeCCEE---EeecCCCCHHHHHHHHHhhcCCCce
Q 017971 120 TLKIFMHGIP---TEYYGPRKAELLVRYLKKFVAPDVS 154 (363)
Q Consensus 120 t~~~~~~g~~---~~y~g~~~~~~i~~~i~~~~~~~v~ 154 (363)
++++|++|.. ..|.|.++.+.|.+|+.++...++.
T Consensus 422 t~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~ 459 (462)
T TIGR01130 422 TIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPLE 459 (462)
T ss_pred EEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCCc
Confidence 9999998754 5799999999999999998865543
No 62
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.57 E-value=2.9e-14 Score=109.72 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=81.3
Q ss_pred hHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCE---
Q 017971 52 NFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI--- 128 (363)
Q Consensus 52 ~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~--- 128 (363)
+|.+.+..+..++|.||++||++|+.+.|.+++++... + .+.+..+|.+++++++++|+|.++||+.+|++|.
T Consensus 14 ~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~ 89 (113)
T cd02975 14 EFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDG 89 (113)
T ss_pred HHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecc
Confidence 35566666778999999999999999999999999764 2 3899999999999999999999999999999764
Q ss_pred EEeecCCCCHHHHHHHHHhhcC
Q 017971 129 PTEYYGPRKAELLVRYLKKFVA 150 (363)
Q Consensus 129 ~~~y~g~~~~~~i~~~i~~~~~ 150 (363)
.+.+.|..+.+++.+|+.....
T Consensus 90 ~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 90 GIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred eEEEEecCchHHHHHHHHHHHh
Confidence 3468899889999999877643
No 63
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.57 E-value=5e-14 Score=109.66 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=79.7
Q ss_pred CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch-----------hhhh
Q 017971 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-----------RLAS 111 (363)
Q Consensus 43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-----------~l~~ 111 (363)
..+..++.+++.+.+.+++..+|+|+++||++|+.+.|.+.+++++. ++.+..||.+.++ ++.+
T Consensus 6 ~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~~~~~~~~~~~~~~~ 80 (122)
T TIGR01295 6 KGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGSFEMSSLNDLTAFRS 80 (122)
T ss_pred ccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccCcCcccHHHHHHHHH
Confidence 35677889999999999899999999999999999999999999862 2557777776443 4556
Q ss_pred hCC----cCcCCEEEEEeCCEEEe-ecC-CCCHHHHHHHHH
Q 017971 112 KQE----IDAFPTLKIFMHGIPTE-YYG-PRKAELLVRYLK 146 (363)
Q Consensus 112 ~~~----i~~~Pt~~~~~~g~~~~-y~g-~~~~~~i~~~i~ 146 (363)
+|+ |.++||+++|++|+.+. ..| ..+.++|.+|+.
T Consensus 81 ~~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 81 RFGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred HcCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 665 55699999999998876 567 566888888763
No 64
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.5e-14 Score=118.47 Aligned_cols=120 Identities=29% Similarity=0.585 Sum_probs=96.5
Q ss_pred eEEc-ChhhHHHhHcCC--CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971 45 VIEL-DESNFDSAISSF--DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (363)
Q Consensus 45 v~~l-~~~~f~~~l~~~--~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 121 (363)
|+.+ ++..|+..+... +.++|.|||.||++|++.+|.|+.+++++.+ ..|.+||.++.+..+..+||+..||+
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~c~~taa~~gV~amPTF 78 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDECRGTAATNGVNAMPTF 78 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHHhhchhhhcCcccCceE
Confidence 4444 457799888443 5999999999999999999999999998754 89999999999999999999999999
Q ss_pred EEEeCCEEEe-ecCCCCHHHHHHHHHhhcCCCce------ecCChHHHHHHHHhc
Q 017971 122 KIFMHGIPTE-YYGPRKAELLVRYLKKFVAPDVS------ILNSDAEVSDFVENA 169 (363)
Q Consensus 122 ~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~~~v~------~i~~~~~~~~~~~~~ 169 (363)
++|++|..++ +.| .++..|.+-+.+++....- .....-++..++...
T Consensus 79 iff~ng~kid~~qG-Ad~~gLe~kv~~~~stsaa~~~~~~~~Kgq~dL~~~I~~~ 132 (288)
T KOG0908|consen 79 IFFRNGVKIDQIQG-ADASGLEEKVAKYASTSAASSGTGDIVKGQMDLKPFIDKV 132 (288)
T ss_pred EEEecCeEeeeecC-CCHHHHHHHHHHHhccCcccccCCCcccceehhhhhhhhh
Confidence 9999999887 555 6688888888888753221 223344677777654
No 65
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4.5e-14 Score=132.45 Aligned_cols=108 Identities=41% Similarity=0.739 Sum_probs=98.2
Q ss_pred CeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971 44 KVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (363)
Q Consensus 44 ~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 122 (363)
.+..++..+|...+ +.+..|+|.||+|||+||+.+.|+|+++++.++. ...+.++.+||+.+..+|++++|+++||+.
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~ 223 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDATVHKSLASRLEVRGYPTLK 223 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccchHHHHhhhhcccCCceEE
Confidence 59999999999976 5667899999999999999999999999998875 556999999999999999999999999999
Q ss_pred EEeCCEE-E-eecCCCCHHHHHHHHHhhcCCC
Q 017971 123 IFMHGIP-T-EYYGPRKAELLVRYLKKFVAPD 152 (363)
Q Consensus 123 ~~~~g~~-~-~y~g~~~~~~i~~~i~~~~~~~ 152 (363)
+|++|.. . .|.|.|+.+.|++|+.+...+.
T Consensus 224 ~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 224 LFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred EecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 9998876 3 4789999999999999998764
No 66
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.51 E-value=1.2e-13 Score=104.78 Aligned_cols=94 Identities=22% Similarity=0.244 Sum_probs=80.0
Q ss_pred hHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC--cCCEEEEEeC--C
Q 017971 52 NFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID--AFPTLKIFMH--G 127 (363)
Q Consensus 52 ~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~~~--g 127 (363)
++......++++++.|+++||++|+.+.|.++++|+++++. +.|+.+|+++++.+++.+++. ++|++.++++ |
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~ 80 (103)
T cd02982 4 TFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDG 80 (103)
T ss_pred HHhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccc
Confidence 33333333689999999999999999999999999998754 999999999999999999999 9999999998 6
Q ss_pred EEEeecCC-CCHHHHHHHHHhh
Q 017971 128 IPTEYYGP-RKAELLVRYLKKF 148 (363)
Q Consensus 128 ~~~~y~g~-~~~~~i~~~i~~~ 148 (363)
..+.+.+. .+.+.|.+|+.+.
T Consensus 81 ~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 81 KKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred cccCCCccccCHHHHHHHHHhh
Confidence 66665544 5899999999764
No 67
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.50 E-value=2.6e-13 Score=106.78 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=79.3
Q ss_pred hhHHHhHcCC-CeEEEEEECCCChhhhhHHHHHH---HHHHHhhcCCCCeEEEEEeCccc-------------hhhhhhC
Q 017971 51 SNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLD---EAAPILAKLKEPIVIAKVDADKY-------------SRLASKQ 113 (363)
Q Consensus 51 ~~f~~~l~~~-~~~lv~fy~~~C~~C~~~~~~~~---~~a~~~~~~~~~v~~~~vd~~~~-------------~~l~~~~ 113 (363)
+.++++++++ ++++|.||++||++|+++.|.+. .+.+.+++ ++.+..+|.+.+ .+++++|
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 4567778888 99999999999999999999985 45555543 388899998764 6899999
Q ss_pred CcCcCCEEEEEeCC--EEE-eecCCCCHHHHHHHHHhhcC
Q 017971 114 EIDAFPTLKIFMHG--IPT-EYYGPRKAELLVRYLKKFVA 150 (363)
Q Consensus 114 ~i~~~Pt~~~~~~g--~~~-~y~g~~~~~~i~~~i~~~~~ 150 (363)
+|.++||+++|.++ +.+ ++.|..+.+.+.+++.....
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 99999999999864 655 58899998998888876543
No 68
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.48 E-value=9.2e-13 Score=109.85 Aligned_cols=113 Identities=19% Similarity=0.314 Sum_probs=85.5
Q ss_pred ccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc---------
Q 017971 34 EEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD--------- 104 (363)
Q Consensus 34 ~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~--------- 104 (363)
.+.+...++-.+..++.+.+.-.--.+++++|.||++||++|+...|.+.++++++.+. .+.+..++++
T Consensus 35 ~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~ 112 (173)
T PRK03147 35 VQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNF 112 (173)
T ss_pred cCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHH
Confidence 33334444555666666554432235689999999999999999999999999988754 3777777764
Q ss_pred -------------cchhhhhhCCcCcCCEEEEEe-CCEEE-eecCCCCHHHHHHHHHhh
Q 017971 105 -------------KYSRLASKQEIDAFPTLKIFM-HGIPT-EYYGPRKAELLVRYLKKF 148 (363)
Q Consensus 105 -------------~~~~l~~~~~i~~~Pt~~~~~-~g~~~-~y~g~~~~~~i~~~i~~~ 148 (363)
.+..+++.|++.++|+++++. +|+.+ .+.|..+.+++.+++.+.
T Consensus 113 ~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 113 VNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred HHHhCCCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 346788999999999999986 56655 489999999999988753
No 69
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.48 E-value=4.8e-13 Score=112.26 Aligned_cols=98 Identities=18% Similarity=0.300 Sum_probs=80.0
Q ss_pred CCCeEEcChhhHHHhH-cC--CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcC
Q 017971 42 DGKVIELDESNFDSAI-SS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF 118 (363)
Q Consensus 42 ~~~v~~l~~~~f~~~l-~~--~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 118 (363)
-+.+.+++..+|...+ +. +.+++|.||++||++|+.+.|.|+++|..+. .+.|++||.++. +..|++++.
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~----~vkFvkI~ad~~---~~~~~i~~l 153 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP----DTKFVKIISTQC---IPNYPDKNL 153 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC----CCEEEEEEhHHh---HhhCCCCCC
Confidence 4789999999999876 33 2489999999999999999999999998764 389999998753 689999999
Q ss_pred CEEEEEeCCEEEe-ecC-------CCCHHHHHHHHH
Q 017971 119 PTLKIFMHGIPTE-YYG-------PRKAELLVRYLK 146 (363)
Q Consensus 119 Pt~~~~~~g~~~~-y~g-------~~~~~~i~~~i~ 146 (363)
||+++|++|+.+. +.| ..+.+.|..++.
T Consensus 154 PTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 154 PTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred CEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 9999999998764 444 345555555554
No 70
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.47 E-value=5.3e-13 Score=96.72 Aligned_cols=80 Identities=24% Similarity=0.340 Sum_probs=70.6
Q ss_pred EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHH
Q 017971 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLV 142 (363)
Q Consensus 63 ~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~ 142 (363)
.+..||++||++|+...|.++++++.++. .+.+..||+++++++++++++.++|++++ +|+ ..+.|..+.+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~-~~~~G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD---AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD-VEFIGAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC---ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE-EEEecCCCHHHHH
Confidence 36789999999999999999999987753 38999999999999999999999999986 665 4788999999999
Q ss_pred HHHHhh
Q 017971 143 RYLKKF 148 (363)
Q Consensus 143 ~~i~~~ 148 (363)
+++.+.
T Consensus 76 ~~l~~~ 81 (82)
T TIGR00411 76 EAIKKR 81 (82)
T ss_pred HHHHhh
Confidence 988764
No 71
>PTZ00062 glutaredoxin; Provisional
Probab=99.44 E-value=3.9e-12 Score=107.05 Aligned_cols=108 Identities=9% Similarity=0.124 Sum_probs=86.3
Q ss_pred ChhhHHHhHcCC-CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971 49 DESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (363)
Q Consensus 49 ~~~~f~~~l~~~-~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 127 (363)
+.+++++.++.+ +..+++|||+||+.|+...|.+.++++++. .+.|+.||.+ |+|.++|++.+|++|
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~----~~~F~~V~~d--------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP----SLEFYVVNLA--------DANNEYGVFEFYQNS 72 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC----CcEEEEEccc--------cCcccceEEEEEECC
Confidence 467788888755 789999999999999999999999998764 4999999966 999999999999999
Q ss_pred EEEe-ecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcC
Q 017971 128 IPTE-YYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAG 170 (363)
Q Consensus 128 ~~~~-y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~ 170 (363)
+.+. +.| .++..+.+++.++..+....- ....+++++++++
T Consensus 73 ~~i~r~~G-~~~~~~~~~~~~~~~~~~~~~-~~~~v~~li~~~~ 114 (204)
T PTZ00062 73 QLINSLEG-CNTSTLVSFIRGWAQKGSSED-TVEKIERLIRNHK 114 (204)
T ss_pred EEEeeeeC-CCHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhcCC
Confidence 9886 555 559999999999887644321 1123556665553
No 72
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.40 E-value=2.1e-12 Score=99.10 Aligned_cols=79 Identities=20% Similarity=0.351 Sum_probs=67.5
Q ss_pred ChhhHHHhHcC--CCeEEEEEEC-------CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-------chhhhhh
Q 017971 49 DESNFDSAISS--FDYILVDFYA-------PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------YSRLASK 112 (363)
Q Consensus 49 ~~~~f~~~l~~--~~~~lv~fy~-------~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------~~~l~~~ 112 (363)
+.++|.+.+.. +++++|.||| +||++|+...|.+++++..+.+ ++.|..||.++ +.++..+
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~---~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE---DCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC---CCEEEEEEcCCcccccCcchhhHhc
Confidence 35778888854 6799999999 9999999999999999988753 38999999976 4689999
Q ss_pred CCcC-cCCEEEEEeCCEEE
Q 017971 113 QEID-AFPTLKIFMHGIPT 130 (363)
Q Consensus 113 ~~i~-~~Pt~~~~~~g~~~ 130 (363)
++|. ++||+++|++|..+
T Consensus 85 ~~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred cCcccCCCEEEEEcCCcee
Confidence 9998 99999999877544
No 73
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.36 E-value=1.1e-11 Score=117.91 Aligned_cols=101 Identities=17% Similarity=0.225 Sum_probs=77.5
Q ss_pred CeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEE------------------------
Q 017971 44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA------------------------ 99 (363)
Q Consensus 44 ~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~------------------------ 99 (363)
.+.+++.... .++++++++|.|||+||++|++..|.+.+++++++..+ +.+.
T Consensus 42 ~l~D~dG~~v--~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~~e~~~~~~~~~~~~~~ 117 (521)
T PRK14018 42 KTADNRPASV--YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWYAGLD 117 (521)
T ss_pred EeecCCCcee--eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEecccccccccHHHHHHHHHhCC
Confidence 3444444433 23477899999999999999999999999998875322 3332
Q ss_pred ----EEeCccchhhhhhCCcCcCCEEEEE-eCCEEEe-ecCCCCHHHHHHHHHhh
Q 017971 100 ----KVDADKYSRLASKQEIDAFPTLKIF-MHGIPTE-YYGPRKAELLVRYLKKF 148 (363)
Q Consensus 100 ----~vd~~~~~~l~~~~~i~~~Pt~~~~-~~g~~~~-y~g~~~~~~i~~~i~~~ 148 (363)
.++++.+..+++.|+|.++|+.+++ ++|+.+. +.|..+.++|..+|+..
T Consensus 118 y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 118 YPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred CcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 2455667789999999999999776 5787664 89999999999999844
No 74
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.30 E-value=1e-10 Score=98.36 Aligned_cols=87 Identities=15% Similarity=0.250 Sum_probs=66.3
Q ss_pred cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-----------------------hhhhhhCC
Q 017971 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-----------------------SRLASKQE 114 (363)
Q Consensus 58 ~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~ 114 (363)
.++++++|.||++||++|++..|.+.++++. ++.+..|+.+++ ..+++.|+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 3678999999999999999999999988642 255566664332 23455789
Q ss_pred cCcCCEEEEEe-CCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971 115 IDAFPTLKIFM-HGIPT-EYYGPRKAELLVRYLKKFVA 150 (363)
Q Consensus 115 i~~~Pt~~~~~-~g~~~-~y~g~~~~~~i~~~i~~~~~ 150 (363)
+.++|+.+++. +|+.. .+.|..+.+.+.+++...+.
T Consensus 140 v~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 140 VYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 99999877774 67654 47899999999888877653
No 75
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.30 E-value=2.2e-11 Score=105.00 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=77.4
Q ss_pred EcChhhHHHhHcCCCe-EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEe
Q 017971 47 ELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM 125 (363)
Q Consensus 47 ~l~~~~f~~~l~~~~~-~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 125 (363)
.|++++.+.+-+..++ .++.||++||++|+...|.+++++... +.+.+..+|.+++++++++|+|.++||+++++
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~----~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~ 194 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN----DKILGEMIEANENPDLAEKYGVMSVPKIVINK 194 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc----CceEEEEEeCCCCHHHHHHhCCccCCEEEEec
Confidence 4555555554443445 455599999999999999999988652 34999999999999999999999999999998
Q ss_pred CCEEEeecCCCCHHHHHHHHHh
Q 017971 126 HGIPTEYYGPRKAELLVRYLKK 147 (363)
Q Consensus 126 ~g~~~~y~g~~~~~~i~~~i~~ 147 (363)
+|.. +.|....+++.+|+.+
T Consensus 195 ~~~~--~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 195 GVEE--FVGAYPEEQFLEYILS 214 (215)
T ss_pred CCEE--EECCCCHHHHHHHHHh
Confidence 8763 8899999999999875
No 76
>PHA02125 thioredoxin-like protein
Probab=99.27 E-value=3.6e-11 Score=85.26 Aligned_cols=68 Identities=29% Similarity=0.518 Sum_probs=55.3
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEE-eecCC-CCHHHH
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPT-EYYGP-RKAELL 141 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~-~y~g~-~~~~~i 141 (363)
++.||++||++|+.+.|.+++++ +.+..||++++++++++|+|.++||++ +|+.+ .+.|. .+..+|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l 69 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAEL 69 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHH
Confidence 78999999999999999987653 457899999999999999999999987 56655 47774 444555
Q ss_pred HH
Q 017971 142 VR 143 (363)
Q Consensus 142 ~~ 143 (363)
.+
T Consensus 70 ~~ 71 (75)
T PHA02125 70 KE 71 (75)
T ss_pred HH
Confidence 54
No 77
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.26 E-value=2.3e-10 Score=96.28 Aligned_cols=163 Identities=25% Similarity=0.336 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC--CEEEeecCC-CCHHHHHHHHHhhcCCCc
Q 017971 77 RLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH--GIPTEYYGP-RKAELLVRYLKKFVAPDV 153 (363)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~--g~~~~y~g~-~~~~~i~~~i~~~~~~~v 153 (363)
.....|.++|+.+.+. +.|+.+. ++++|+++++.. |++++|++ +++..|.|. .+.+.|.+||....-|.+
T Consensus 7 ~~~~~f~~~A~~~~~~---~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v 79 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGD---YQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLV 79 (184)
T ss_dssp HHHHHHHHHHHHHTTT---SEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSC
T ss_pred HHHHHHHHHHHhCcCC---cEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccc
Confidence 4677899999998764 9999888 788999999999 99999998 457889998 899999999999999999
Q ss_pred eecCChHHHHHHHHhcCCcccEEEeecC-Ch-------hHHHHHHHHhhhhhHHHHh-hhcchhhhhhcCCC--CCCeEE
Q 017971 154 SILNSDAEVSDFVENAGTFFPLFIGFGL-DE-------SVMSNLALKYKKKAWFAVA-KDFSEDTMVLYDFD--KVPALV 222 (363)
Q Consensus 154 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~-------~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~p~iv 222 (363)
.+++.. .+..+...... ++++.+.. +. ..++.+|..+++...|..+ .+..+.....++++ ..|.++
T Consensus 80 ~~~t~~-n~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~v 156 (184)
T PF13848_consen 80 PELTPE-NFEKLFSSPKP--PVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALV 156 (184)
T ss_dssp EEESTT-HHHHHHSTSSE--EEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEE
T ss_pred cccchh-hHHHHhcCCCc--eEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEE
Confidence 999875 58888876542 24444443 22 2366778888877655544 23346678899998 789999
Q ss_pred EEcCCCCCc-ccccCCCCHHHHHHHHHh
Q 017971 223 ALQPSYNEH-NIFYGPFDEEFLEEFIKQ 249 (363)
Q Consensus 223 ~~~~~~~~~-~~~~g~~~~~~l~~fi~~ 249 (363)
++....+.. ..+.++++.+.|.+|+++
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 157 IFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 998654443 224688999999999974
No 78
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.26 E-value=1.4e-11 Score=95.26 Aligned_cols=88 Identities=19% Similarity=0.286 Sum_probs=62.1
Q ss_pred hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch-hhhhhCCcCc--CCEEEEEe-
Q 017971 50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-RLASKQEIDA--FPTLKIFM- 125 (363)
Q Consensus 50 ~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-~l~~~~~i~~--~Pt~~~~~- 125 (363)
++.++.+..++++++|.|||+||++|+.+.|.+.+.+..... . ..|..+|.+.++ ...+.|++.+ +||+++|.
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~--~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~ 85 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-S--HNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDP 85 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-c--CcEEEEEecCCCCchhhhcccCCCccceEEEECC
Confidence 344555667789999999999999999999999998765432 2 334445554443 4557899986 99999996
Q ss_pred CCEEEe----ecCCCCHHH
Q 017971 126 HGIPTE----YYGPRKAEL 140 (363)
Q Consensus 126 ~g~~~~----y~g~~~~~~ 140 (363)
+|+.+. ..|....+.
T Consensus 86 ~Gk~~~~~~~~~~~~~~~~ 104 (117)
T cd02959 86 SGDVHPEIINKKGNPNYKY 104 (117)
T ss_pred CCCCchhhccCCCCccccc
Confidence 776542 445444433
No 79
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.24 E-value=5.4e-11 Score=84.52 Aligned_cols=73 Identities=18% Similarity=0.259 Sum_probs=59.5
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCC-CCHHHHH
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGP-RKAELLV 142 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~-~~~~~i~ 142 (363)
-|.||++||++|+...|.++++++++.. .+.+..+| +.+.+.++++.+.|++.+ +|+.+ +.|. .+.+.+.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~---~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~-~~G~~~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI---DAEFEKVT---DMNEILEAGVTATPGVAV--DGELV-IMGKIPSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC---CeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE-EEeccCCHHHHH
Confidence 3789999999999999999999987643 48888888 455588899999999999 77766 7775 4557777
Q ss_pred HHH
Q 017971 143 RYL 145 (363)
Q Consensus 143 ~~i 145 (363)
+++
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 765
No 80
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.24 E-value=5e-11 Score=93.68 Aligned_cols=108 Identities=14% Similarity=0.188 Sum_probs=89.6
Q ss_pred CCcccCCh-hhHHhhhcCCCcEEEEEEeC---CChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCC
Q 017971 253 PLSVPINQ-DTLNLLKDDKRKIVLAIVED---ETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKS 326 (363)
Q Consensus 253 p~~~~lt~-~~~~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~ 326 (363)
|-+.+++. +.+...|..+.-+++.|++. .+.+..+++++.++++|+++++ +.|+|+|+.+++.+++.||+ ...
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl-~~~ 80 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNI-GGF 80 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCC-Ccc
Confidence 44667775 45566887766777777753 3556678899999999999998 89999999999999999999 556
Q ss_pred CCCeEEEEeCCC-CeeEEEEEEeehhhhhHhhhhhc
Q 017971 327 KLPKMVVWDGNE-NYLTVSINVLKTRVCFFMLTLLQ 361 (363)
Q Consensus 327 ~~P~~vi~~~~~-~y~~~~~~~~~~~~~~~~~~~~~ 361 (363)
+.|++++++.++ ||....++.+.+-|..|+..+|.
T Consensus 81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred CCCEEEEEecccCccccccCccCHHHHHHHHHHHHc
Confidence 899999999985 77778899999999999999874
No 81
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.24 E-value=3.4e-11 Score=92.04 Aligned_cols=103 Identities=12% Similarity=0.109 Sum_probs=89.6
Q ss_pred cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHh---CCC-cEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971 255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASA---NRE-LVFCYVGIKQFADFADTFEANKKSKLPK 330 (363)
Q Consensus 255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~---~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~ 330 (363)
++++|.+++..+..++.|..++++ +.+..+.+.+.++.+|++ +++ +.|+++|+.++...++.||+ +..+.|.
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f---~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl-~~~~~P~ 76 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFH---DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGK-TPADLPV 76 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEe---cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCC-CHhHCCE
Confidence 578999999999999999998888 455567788999999999 999 99999999998889999999 5668999
Q ss_pred EEEEeCCC--CeeEEEEEEeehhhhhHhhhhhc
Q 017971 331 MVVWDGNE--NYLTVSINVLKTRVCFFMLTLLQ 361 (363)
Q Consensus 331 ~vi~~~~~--~y~~~~~~~~~~~~~~~~~~~~~ 361 (363)
++|.+..+ ||...+.+++.+-|..||..|+.
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 99999975 44436778889999999999874
No 82
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.23 E-value=2e-10 Score=92.68 Aligned_cols=86 Identities=17% Similarity=0.219 Sum_probs=63.0
Q ss_pred cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc------------hhhh-hhC---CcCcCCEE
Q 017971 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY------------SRLA-SKQ---EIDAFPTL 121 (363)
Q Consensus 58 ~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~------------~~l~-~~~---~i~~~Pt~ 121 (363)
...++.+|.||++||++|++..|.++++++++. +.+..|+.+.. .... ..+ ++.++|+.
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt 122 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPAT 122 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeE
Confidence 345677999999999999999999999998762 33434444322 2333 345 78999999
Q ss_pred EEEeC-CE-EE-eecCCCCHHHHHHHHHhh
Q 017971 122 KIFMH-GI-PT-EYYGPRKAELLVRYLKKF 148 (363)
Q Consensus 122 ~~~~~-g~-~~-~y~g~~~~~~i~~~i~~~ 148 (363)
+++.. |. .. .+.|..+.+.+.+.+.+.
T Consensus 123 ~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 123 FLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 99964 44 34 478999999988887654
No 83
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.22 E-value=3e-10 Score=111.36 Aligned_cols=101 Identities=21% Similarity=0.376 Sum_probs=80.8
Q ss_pred CeEEc-ChhhHHHhH----cCCCeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEeCccc----hhhhh
Q 017971 44 KVIEL-DESNFDSAI----SSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADKY----SRLAS 111 (363)
Q Consensus 44 ~v~~l-~~~~f~~~l----~~~~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~----~~l~~ 111 (363)
....+ +.+++++.+ .++++++|.|||+||++|+..++.. .++.+.++ ++.+.++|++++ .++++
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~~~~~l~~ 528 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNAEDVALLK 528 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCChhhHHHHH
Confidence 34445 456777766 3468999999999999999998875 56666553 388999999854 68899
Q ss_pred hCCcCcCCEEEEEe-CCEEE---eecCCCCHHHHHHHHHhh
Q 017971 112 KQEIDAFPTLKIFM-HGIPT---EYYGPRKAELLVRYLKKF 148 (363)
Q Consensus 112 ~~~i~~~Pt~~~~~-~g~~~---~y~g~~~~~~i~~~i~~~ 148 (363)
+|++.++|++++|. +|+.+ ++.|..+.+++.+++++.
T Consensus 529 ~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 529 HYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred HcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 99999999999996 67763 578999999999998874
No 84
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.21 E-value=5.7e-11 Score=91.46 Aligned_cols=87 Identities=26% Similarity=0.402 Sum_probs=62.3
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc--------------------hhhhhhCCcCcC
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY--------------------SRLASKQEIDAF 118 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--------------------~~l~~~~~i~~~ 118 (363)
++++.++.|+++||++|+++.+++.+..+.......++.+..++++.. .++.+.++|.++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 568999999999999999999999875443222222467777777543 358899999999
Q ss_pred CEEEEEe-CCEEE-eecCCCCHHHHHHHH
Q 017971 119 PTLKIFM-HGIPT-EYYGPRKAELLVRYL 145 (363)
Q Consensus 119 Pt~~~~~-~g~~~-~y~g~~~~~~i~~~i 145 (363)
||++++. +|+.+ .+.|..+.+++.+++
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999996 67765 589999999998764
No 85
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.20 E-value=4.1e-10 Score=93.74 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=66.8
Q ss_pred cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe-----------------------CccchhhhhhCC
Q 017971 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-----------------------ADKYSRLASKQE 114 (363)
Q Consensus 58 ~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~ 114 (363)
.++++++|.||++||++|++..|.+.++++. + +.+..|+ ++.+..+.+.|+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~--~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~ 134 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD----G--LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLG 134 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc----C--CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcC
Confidence 4678999999999999999999999888753 1 3333333 344556778899
Q ss_pred cCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971 115 IDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFV 149 (363)
Q Consensus 115 i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~ 149 (363)
+.++|+.+++ ++|+.. .+.|..+.+++.+++++.+
T Consensus 135 v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 135 VYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 9999976666 577754 4789999999999998875
No 86
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.16 E-value=1.2e-10 Score=90.35 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=63.8
Q ss_pred ChhhHHHhHcCCCeEEEEEECCCChhhhhHHHH-HH--HHHHHhhcCCCCeEEEEEeCccchhhhhh--------CCcCc
Q 017971 49 DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQ-LD--EAAPILAKLKEPIVIAKVDADKYSRLASK--------QEIDA 117 (363)
Q Consensus 49 ~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~-~~--~~a~~~~~~~~~v~~~~vd~~~~~~l~~~--------~~i~~ 117 (363)
+++.++.+.+++++++|.||++||+.|+.+.+. |. ++++.+.. ++.+.++|.++++++++. |++.|
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREERPDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC
Confidence 567788889999999999999999999999874 33 35554433 488999999998888763 58999
Q ss_pred CCEEEEEe-CCEEE
Q 017971 118 FPTLKIFM-HGIPT 130 (363)
Q Consensus 118 ~Pt~~~~~-~g~~~ 130 (363)
+|+++++. +|+++
T Consensus 81 ~Pt~vfl~~~G~~~ 94 (124)
T cd02955 81 WPLNVFLTPDLKPF 94 (124)
T ss_pred CCEEEEECCCCCEE
Confidence 99999996 46655
No 87
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.15 E-value=8.2e-10 Score=85.70 Aligned_cols=105 Identities=14% Similarity=0.150 Sum_probs=89.4
Q ss_pred EEcChhhHHHhHcCCCeEEEEEECC--CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEE
Q 017971 46 IELDESNFDSAISSFDYILVDFYAP--WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (363)
Q Consensus 46 ~~l~~~~f~~~l~~~~~~lv~fy~~--~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 123 (363)
..++.++++..+..++..++.|-.+ .++.+...+=.+.++++++.+ .++.+++||++++++++.+|||.++||+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~~v~~akVDiD~~~~LA~~fgV~siPTLl~ 97 (132)
T PRK11509 20 TPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--YTWQVAIADLEQSEAIGDRFGVFRFPATLV 97 (132)
T ss_pred CccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--CceEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence 3455688899888877777666554 578888899999999998852 249999999999999999999999999999
Q ss_pred EeCCEEEe-ecCCCCHHHHHHHHHhhcCCC
Q 017971 124 FMHGIPTE-YYGPRKAELLVRYLKKFVAPD 152 (363)
Q Consensus 124 ~~~g~~~~-y~g~~~~~~i~~~i~~~~~~~ 152 (363)
|++|+.+. ..|.++.+.+.+|+.+.+..+
T Consensus 98 FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 98 FTGGNYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred EECCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 99999885 789999999999999987654
No 88
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=99.12 E-value=4.2e-10 Score=85.81 Aligned_cols=102 Identities=11% Similarity=0.094 Sum_probs=82.4
Q ss_pred ccCChhhHHhhhcCCCcEEEEEEeC---CChhhHHHHHHHHHHHHHhCC-C-cEEEEEeccCchhHHhhcCCCCCCC--C
Q 017971 256 VPINQDTLNLLKDDKRKIVLAIVED---ETEEKSQKLVTTLKAAASANR-E-LVFCYVGIKQFADFADTFEANKKSK--L 328 (363)
Q Consensus 256 ~~lt~~~~~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~l~~~a~~~~-~-~~f~~vd~~~~~~~~~~~gi~~~~~--~ 328 (363)
.++|.+|...... .|.++++++. .+.+..+.+++.++++|++++ + +.|+|+|..++...++.||+ +..+ .
T Consensus 2 ~~~~~en~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl-~~~~~~~ 78 (111)
T cd03073 2 GHRTKDNRAQFTK--KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGL-DFSGGEK 78 (111)
T ss_pred CeeccchHHHhcc--CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCC-CcccCCC
Confidence 5678888888764 4556665533 245667889999999999999 6 99999999998889999999 4556 9
Q ss_pred CeEEEEeCCCCeeEEEEEE-eehhhhhHhhhhh
Q 017971 329 PKMVVWDGNENYLTVSINV-LKTRVCFFMLTLL 360 (363)
Q Consensus 329 P~~vi~~~~~~y~~~~~~~-~~~~~~~~~~~~~ 360 (363)
|+++|.+.+++.|..+.++ +.+-|..||..++
T Consensus 79 P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 79 PVVAIRTAKGKKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CEEEEEeCCCCccCCCcccCCHHHHHHHHHHhC
Confidence 9999999876555577788 8899999999875
No 89
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.11 E-value=4.4e-10 Score=89.10 Aligned_cols=73 Identities=27% Similarity=0.395 Sum_probs=58.1
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc------------------------hhhhhhCC
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY------------------------SRLASKQE 114 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~ 114 (363)
++++++|.||++||++|++..|.+.++.+.+.+.+.++.+..|+.+.+ ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 568999999999999999999999999988875434566665555433 45788999
Q ss_pred cCcCCEEEEEe-CCEEEe
Q 017971 115 IDAFPTLKIFM-HGIPTE 131 (363)
Q Consensus 115 i~~~Pt~~~~~-~g~~~~ 131 (363)
+.++|+++++. +|+.+.
T Consensus 97 v~~~P~~~lid~~G~i~~ 114 (131)
T cd03009 97 IEGIPTLIILDADGEVVT 114 (131)
T ss_pred CCCCCEEEEECCCCCEEc
Confidence 99999999996 565543
No 90
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.09 E-value=4e-11 Score=99.67 Aligned_cols=105 Identities=25% Similarity=0.464 Sum_probs=94.9
Q ss_pred CCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971 42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (363)
Q Consensus 42 ~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 121 (363)
.+.+..++++|....+. +-|+|+|+||||+.|+.+.|.|.+.|.--.+ -.|.++.||.+.++-|..+|-+...|||
T Consensus 23 ~s~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~d--L~v~va~VDvt~npgLsGRF~vtaLptI 98 (248)
T KOG0913|consen 23 SSKLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLD--LGVKVAKVDVTTNPGLSGRFLVTALPTI 98 (248)
T ss_pred cceeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCC--CceeEEEEEEEeccccceeeEEEecceE
Confidence 44899999999999875 5799999999999999999999999876554 3599999999999999999999999999
Q ss_pred EEEeCCEEEeecCCCCHHHHHHHHHhhcC
Q 017971 122 KIFMHGIPTEYYGPRKAELLVRYLKKFVA 150 (363)
Q Consensus 122 ~~~~~g~~~~y~g~~~~~~i~~~i~~~~~ 150 (363)
+..++|..-+|.|.|+..++++|+...-.
T Consensus 99 YHvkDGeFrrysgaRdk~dfisf~~~r~w 127 (248)
T KOG0913|consen 99 YHVKDGEFRRYSGARDKNDFISFEEHREW 127 (248)
T ss_pred EEeeccccccccCcccchhHHHHHHhhhh
Confidence 99999998899999999999999976643
No 91
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.4e-10 Score=92.19 Aligned_cols=88 Identities=23% Similarity=0.426 Sum_probs=75.2
Q ss_pred CCCCeEEc-ChhhHHHhH--cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC-
Q 017971 41 IDGKVIEL-DESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID- 116 (363)
Q Consensus 41 ~~~~v~~l-~~~~f~~~l--~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~- 116 (363)
..+.+..+ +++.++..+ +....|+|.||+.|.+.|+.+.|.|.+++.++. .+...||+||....++.+++|+|.
T Consensus 122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn--~~~lkFGkvDiGrfpd~a~kfris~ 199 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYN--NNLLKFGKVDIGRFPDVAAKFRISL 199 (265)
T ss_pred CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhC--CCCCcccceeeccCcChHHheeecc
Confidence 34567888 667777777 444699999999999999999999999998875 456999999999999999999874
Q ss_pred -----cCCEEEEEeCCEEE
Q 017971 117 -----AFPTLKIFMHGIPT 130 (363)
Q Consensus 117 -----~~Pt~~~~~~g~~~ 130 (363)
..||+.+|++|+.+
T Consensus 200 s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 200 SPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred CcccccCCeEEEEccchhh
Confidence 58999999999765
No 92
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.08 E-value=6e-10 Score=77.20 Aligned_cols=65 Identities=23% Similarity=0.429 Sum_probs=54.2
Q ss_pred EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecC
Q 017971 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYG 134 (363)
Q Consensus 63 ~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g 134 (363)
.++.||++||++|++..+.++++++.. +++.+..+|.++++++++++++.++|++++ +| .+.|.|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~----~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~-~~~~~g 66 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN----PNISAEMIDAAEFPDLADEYGVMSVPAIVI--NG-KVEFVG 66 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC----CceEEEEEEcccCHhHHHHcCCcccCEEEE--CC-EEEEec
Confidence 467899999999999999999997642 349999999999999999999999999875 44 344444
No 93
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.06 E-value=9.2e-10 Score=86.20 Aligned_cols=94 Identities=23% Similarity=0.289 Sum_probs=68.0
Q ss_pred EEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEE--------------------EeCcc
Q 017971 46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK--------------------VDADK 105 (363)
Q Consensus 46 ~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~--------------------vd~~~ 105 (363)
.+++++.+.....++++++|.||++||++|+...|.+.++++.+.- +.+.. +-++.
T Consensus 6 ~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~----i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (123)
T cd03011 6 TTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPV----VSVALRSGDDGAVARFMQKKGYGFPVINDP 81 (123)
T ss_pred ecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCCE----EEEEccCCCHHHHHHHHHHcCCCccEEECC
Confidence 3444444444444568999999999999999999999998876321 22211 11245
Q ss_pred chhhhhhCCcCcCCEEEEEeCCEEE-eecCCCCHHHHHH
Q 017971 106 YSRLASKQEIDAFPTLKIFMHGIPT-EYYGPRKAELLVR 143 (363)
Q Consensus 106 ~~~l~~~~~i~~~Pt~~~~~~g~~~-~y~g~~~~~~i~~ 143 (363)
+.++++.|+|.++|+++++.++... .+.|..+.+.|.+
T Consensus 82 ~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 82 DGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred CcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 5789999999999999999765532 3788888888764
No 94
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.06 E-value=1.2e-09 Score=97.04 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=69.9
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---------chhhhhhCCcCcCCEEEEEeC-CE
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------YSRLASKQEIDAFPTLKIFMH-GI 128 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---------~~~l~~~~~i~~~Pt~~~~~~-g~ 128 (363)
.+++++|.||++||++|+...|.++++++++. -.|....+|... +..+++++||.++|+++++.+ |+
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence 36899999999999999999999999998763 124444444422 356889999999999999986 44
Q ss_pred EE-e-ecCCCCHHHHHHHHHhhcC
Q 017971 129 PT-E-YYGPRKAELLVRYLKKFVA 150 (363)
Q Consensus 129 ~~-~-y~g~~~~~~i~~~i~~~~~ 150 (363)
.+ . ..|..+.+.|.+.+.....
T Consensus 242 ~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 242 QFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHhc
Confidence 33 3 5799999999999887654
No 95
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.04 E-value=1.8e-09 Score=85.11 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=60.2
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe-----------------------CccchhhhhhCCc
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-----------------------ADKYSRLASKQEI 115 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~i 115 (363)
++++++|.||++||++|++..|.+.++++... +.+..|+ ++.+..+++.|++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v 98 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR-----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGV 98 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCC
Confidence 46899999999999999999999999987641 4344333 4566778899999
Q ss_pred CcCCEEEEE-eCCEEE-eecCCCCHHHH
Q 017971 116 DAFPTLKIF-MHGIPT-EYYGPRKAELL 141 (363)
Q Consensus 116 ~~~Pt~~~~-~~g~~~-~y~g~~~~~~i 141 (363)
.++|+.+++ ++|+.. .+.|..+.+.|
T Consensus 99 ~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 99 YGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCCeEEEECCCceEEEEEeccCChHhc
Confidence 999966666 577755 48898877654
No 96
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.03 E-value=1.1e-09 Score=86.83 Aligned_cols=73 Identities=23% Similarity=0.375 Sum_probs=57.5
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-------------------------hhhhhhC
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------------------------SRLASKQ 113 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------------------------~~l~~~~ 113 (363)
++++++|.||++||++|+...|.+.++++.+++...++.+..|+++.+ ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 468999999999999999999999999988875433466666665543 2456779
Q ss_pred CcCcCCEEEEEe-CCEEEe
Q 017971 114 EIDAFPTLKIFM-HGIPTE 131 (363)
Q Consensus 114 ~i~~~Pt~~~~~-~g~~~~ 131 (363)
+|.++|+++++. +|+.+.
T Consensus 96 ~v~~iPt~~lid~~G~iv~ 114 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVT 114 (132)
T ss_pred CCCCCCEEEEECCCCCEEc
Confidence 999999999996 565543
No 97
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.02 E-value=1.5e-09 Score=82.19 Aligned_cols=98 Identities=17% Similarity=0.313 Sum_probs=78.4
Q ss_pred hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC--
Q 017971 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN-- 337 (363)
Q Consensus 261 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~-- 337 (363)
+++......+.|++++|+.. .....+.+...++++|+++++ +.|+|+|+++++++++.||+ ...+.|++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i-~~~~~P~~~~~~~~~~ 80 (103)
T cd02982 3 ETFFNYEESGKPLLVLFYNK-DDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGL-KEEDLPVIAIINLSDG 80 (103)
T ss_pred hHHhhhhhcCCCEEEEEEcC-ChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCC-ChhhCCEEEEEecccc
Confidence 34444444467888877643 455678899999999999998 99999999999999999999 44589999999994
Q ss_pred CCeeEEEEEEeehhhhhHhhhhh
Q 017971 338 ENYLTVSINVLKTRVCFFMLTLL 360 (363)
Q Consensus 338 ~~y~~~~~~~~~~~~~~~~~~~~ 360 (363)
++|....+.++.+.+.+|+..++
T Consensus 81 ~k~~~~~~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 81 KKYLMPEEELTAESLEEFVEDFL 103 (103)
T ss_pred cccCCCccccCHHHHHHHHHhhC
Confidence 46666666678999999998765
No 98
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.96 E-value=2.8e-08 Score=81.71 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=64.3
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-------------hhhhhhCCc--CcCCEEEEEe-CC
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------------SRLASKQEI--DAFPTLKIFM-HG 127 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~i--~~~Pt~~~~~-~g 127 (363)
+|.||++||++|++..|.+.++++++. +.+..|+.+.. ..+.+.|++ .++|+.+++. +|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G 147 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNT 147 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence 888999999999999999999998762 44444544322 235667885 6999999995 56
Q ss_pred EEE--eecCCCCHHHHHHHHHhhcCC
Q 017971 128 IPT--EYYGPRKAELLVRYLKKFVAP 151 (363)
Q Consensus 128 ~~~--~y~g~~~~~~i~~~i~~~~~~ 151 (363)
+.. .+.|..+.+++.+.+...+.-
T Consensus 148 ~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 148 LEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred cEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 653 489999999998888877653
No 99
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.95 E-value=1.8e-08 Score=84.96 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=59.1
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe-------------C-----ccchhhhhhCCcCcCCE
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-------------A-----DKYSRLASKQEIDAFPT 120 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd-------------~-----~~~~~l~~~~~i~~~Pt 120 (363)
++++++|.||++||+.|++..|.+.++.+.. +.++.+...| . ....++++.|++.+.|+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~ 149 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY 149 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence 5689999999999999999999999987643 2224433311 0 12346788899999999
Q ss_pred EEEEeCCEEEeecCC-CCHHHHHHHHHh
Q 017971 121 LKIFMHGIPTEYYGP-RKAELLVRYLKK 147 (363)
Q Consensus 121 ~~~~~~g~~~~y~g~-~~~~~i~~~i~~ 147 (363)
.+++.....+.+.|. .+.+.+.+.++.
T Consensus 150 ~~lID~~G~I~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 150 GVLLDQDGKIRAKGLTNTREHLESLLEA 177 (189)
T ss_pred EEEECCCCeEEEccCCCCHHHHHHHHHH
Confidence 888865444555664 344566666543
No 100
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.95 E-value=7.2e-09 Score=82.72 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=58.7
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcC-----CCCeEEEEEeCccc-------------------------hh
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL-----KEPIVIAKVDADKY-------------------------SR 108 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~-----~~~v~~~~vd~~~~-------------------------~~ 108 (363)
++++++|+|||+||++|+++.|.+.++.+.+++. ..++.+..|+.+++ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 5689999999999999999999999998877643 22477777765432 24
Q ss_pred hhhhCCcCcCCEEEEEe-CCEEEeecC
Q 017971 109 LASKQEIDAFPTLKIFM-HGIPTEYYG 134 (363)
Q Consensus 109 l~~~~~i~~~Pt~~~~~-~g~~~~y~g 134 (363)
++++|++.++|+.+++. +|+.+.-.|
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~~~ 130 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAANA 130 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEeeCh
Confidence 77788999999999996 566554444
No 101
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.95 E-value=7.3e-09 Score=77.08 Aligned_cols=66 Identities=30% Similarity=0.493 Sum_probs=53.3
Q ss_pred CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch-------------------------hhhhhCC
Q 017971 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-------------------------RLASKQE 114 (363)
Q Consensus 60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-------------------------~l~~~~~ 114 (363)
+++++|.|||+||++|++..|.+.++.+.+++ +.++.+..|.+++.. .+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 57999999999999999999999999999984 556989888876442 3677788
Q ss_pred cCcCCEEEEEeC
Q 017971 115 IDAFPTLKIFMH 126 (363)
Q Consensus 115 i~~~Pt~~~~~~ 126 (363)
|.++|+++++..
T Consensus 80 i~~iP~~~lld~ 91 (95)
T PF13905_consen 80 INGIPTLVLLDP 91 (95)
T ss_dssp -TSSSEEEEEET
T ss_pred CCcCCEEEEECC
Confidence 999999998864
No 102
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.94 E-value=6.8e-09 Score=75.88 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=62.7
Q ss_pred CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHH
Q 017971 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAE 139 (363)
Q Consensus 60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~ 139 (363)
++.-+..|+++||++|....+.+.++++.. +++.+..+|.++.++++++|+|.++|++++ +|+. .+.|..+.+
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~----~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~-~~~G~~~~~ 84 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLN----PNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL-FGFGRMTLE 84 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHC----CCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE-EEeCCCCHH
Confidence 356788899999999999999999998754 249999999999999999999999999964 6653 446866666
Q ss_pred HHH
Q 017971 140 LLV 142 (363)
Q Consensus 140 ~i~ 142 (363)
+++
T Consensus 85 e~~ 87 (89)
T cd03026 85 EIL 87 (89)
T ss_pred HHh
Confidence 553
No 103
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.93 E-value=6.4e-09 Score=79.79 Aligned_cols=74 Identities=24% Similarity=0.459 Sum_probs=62.5
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-----------------------hhhhhhCCc
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-----------------------SRLASKQEI 115 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i 115 (363)
.+++++|.||++||++|+...+.+.++.+.+. ..++.+..|+++.+ ..+++.|++
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYK--DDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV 95 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhC--CCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc
Confidence 36899999999999999999999999998875 23599999999886 788999999
Q ss_pred CcCCEEEEEe-CCEEEe-ecC
Q 017971 116 DAFPTLKIFM-HGIPTE-YYG 134 (363)
Q Consensus 116 ~~~Pt~~~~~-~g~~~~-y~g 134 (363)
.++|+++++. +|+.+. |.|
T Consensus 96 ~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 96 RGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred CccceEEEECCCCcEEEEecC
Confidence 9999999996 565443 544
No 104
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.91 E-value=8e-09 Score=97.83 Aligned_cols=109 Identities=19% Similarity=0.328 Sum_probs=82.8
Q ss_pred cCCCCCe-EEcChh-hHHHhHcCCC--eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc----hhhh
Q 017971 39 FKIDGKV-IELDES-NFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----SRLA 110 (363)
Q Consensus 39 ~~~~~~v-~~l~~~-~f~~~l~~~~--~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~l~ 110 (363)
+...+.. ..++.. .+++.+.+++ ++++.|||+||-.||.+++..-...+.. ..-.++...++|.+++ .++-
T Consensus 449 ~~~~~~~~q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~-~~~~~~vlLqaDvT~~~p~~~~lL 527 (569)
T COG4232 449 SVSHGEFWQPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQ-QALQDVVLLQADVTANDPAITALL 527 (569)
T ss_pred CCccchhhhccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHH-HhcCCeEEEEeeecCCCHHHHHHH
Confidence 3333443 566655 8899987666 9999999999999999988755322221 2234599999999876 5677
Q ss_pred hhCCcCcCCEEEEEe-CCEE-EeecCCCCHHHHHHHHHhh
Q 017971 111 SKQEIDAFPTLKIFM-HGIP-TEYYGPRKAELLVRYLKKF 148 (363)
Q Consensus 111 ~~~~i~~~Pt~~~~~-~g~~-~~y~g~~~~~~i~~~i~~~ 148 (363)
++||+-+.|++.+|. +|+. ..-.|..+++.+.+++++.
T Consensus 528 k~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 528 KRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred HHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 899999999999998 4543 3488999999999999875
No 105
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.87 E-value=8.9e-08 Score=71.97 Aligned_cols=106 Identities=25% Similarity=0.449 Sum_probs=84.3
Q ss_pred CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-----cchhhhhhCCc--
Q 017971 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-----KYSRLASKQEI-- 115 (363)
Q Consensus 43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-----~~~~l~~~~~i-- 115 (363)
...++|++-+|++++.+.+.+||.|-... +.-.-+.+|.++|++.....+++-++.|... +|.+|+++|++
T Consensus 4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred CceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 35789999999999999999999998765 4556778899999555556778999999875 56889999999
Q ss_pred CcCCEEEEEeCC--EEEee--cCCCCHHHHHHHHHhhcC
Q 017971 116 DAFPTLKIFMHG--IPTEY--YGPRKAELLVRYLKKFVA 150 (363)
Q Consensus 116 ~~~Pt~~~~~~g--~~~~y--~g~~~~~~i~~~i~~~~~ 150 (363)
+.+|.+++|.+| .++.| .|..+.+.|..|+..+++
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 569999999954 58888 899999999999998865
No 106
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.84 E-value=2.4e-08 Score=76.98 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=72.3
Q ss_pred HHhHcCCCeEEEEEECCCChhhhhHHHH-HH--HHHHHhhcCCCCeEEEEEeCc--cchhhhhhCCcCcCCEEEEEeC--
Q 017971 54 DSAISSFDYILVDFYAPWCGHCKRLAPQ-LD--EAAPILAKLKEPIVIAKVDAD--KYSRLASKQEIDAFPTLKIFMH-- 126 (363)
Q Consensus 54 ~~~l~~~~~~lv~fy~~~C~~C~~~~~~-~~--~~a~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~~-- 126 (363)
+.+.+++++++|+|+++||+.|+.+... |. ++.+.+++ ++.+..+|.+ +...+++.|++.++|++.++..
T Consensus 11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~ 87 (114)
T cd02958 11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRT 87 (114)
T ss_pred HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCcc
Confidence 3344678999999999999999999764 43 24444443 3778888876 4567899999999999999964
Q ss_pred CEEE-eecCCCCHHHHHHHHHhhc
Q 017971 127 GIPT-EYYGPRKAELLVRYLKKFV 149 (363)
Q Consensus 127 g~~~-~y~g~~~~~~i~~~i~~~~ 149 (363)
|+.+ ...|..+++.+.+-+++..
T Consensus 88 g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 88 GEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred CcEeEEEcCCCCHHHHHHHHHHHH
Confidence 6655 4799999999988887653
No 107
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.1e-07 Score=74.17 Aligned_cols=96 Identities=24% Similarity=0.304 Sum_probs=68.8
Q ss_pred HHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----------------cchhhhhhCCcC
Q 017971 53 FDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----------------KYSRLASKQEID 116 (363)
Q Consensus 53 f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----------------~~~~l~~~~~i~ 116 (363)
...+.-.+++.+++|-++.|.+|.++........+.-+....++.+..+|.+ ..++|++.|+++
T Consensus 35 ~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vr 114 (182)
T COG2143 35 NKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVR 114 (182)
T ss_pred HHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccc
Confidence 4445556789999999999999999988865543322222234777777654 235899999999
Q ss_pred cCCEEEEEeC-CEEE-eecCCCCHHHHHHHHHhh
Q 017971 117 AFPTLKIFMH-GIPT-EYYGPRKAELLVRYLKKF 148 (363)
Q Consensus 117 ~~Pt~~~~~~-g~~~-~y~g~~~~~~i~~~i~~~ 148 (363)
++|++++|.+ |+.+ .-.|...+++...-+.-.
T Consensus 115 stPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYV 148 (182)
T COG2143 115 STPTFVFFDKTGKTILELPGYMPPEQFLAVLKYV 148 (182)
T ss_pred cCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHH
Confidence 9999999964 5655 458988888766554433
No 108
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.81 E-value=5.4e-08 Score=101.94 Aligned_cols=90 Identities=17% Similarity=0.299 Sum_probs=73.7
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC---------------------------ccchhhhh
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA---------------------------DKYSRLAS 111 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~---------------------------~~~~~l~~ 111 (363)
++++++|.|||+||++|++..|.++++.+++++. .+.+..|.+ +.+..+.+
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~--~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~ 496 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ--PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWR 496 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC--CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHH
Confidence 4689999999999999999999999999988653 366665532 23446778
Q ss_pred hCCcCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971 112 KQEIDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFVA 150 (363)
Q Consensus 112 ~~~i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~~ 150 (363)
+|+|.++|+++++ ++|+.+ .+.|....+.+.+++...+.
T Consensus 497 ~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred hcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 8999999999999 578765 47899999999999988753
No 109
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.78 E-value=8.9e-08 Score=79.27 Aligned_cols=80 Identities=11% Similarity=0.028 Sum_probs=58.2
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEE------EEEeCc----------------------------
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVI------AKVDAD---------------------------- 104 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~------~~vd~~---------------------------- 104 (363)
.++..+|.|||.||+.|+..+|.+.+++.. + +.+ ..||.+
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~----~--~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll 131 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA----K--FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL 131 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc----C--CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEE
Confidence 479999999999999999999999999642 1 222 233322
Q ss_pred -cchhhhhhCCcCcCCEE-EEEe-CCEEE-eecCCCCHHHHHHH
Q 017971 105 -KYSRLASKQEIDAFPTL-KIFM-HGIPT-EYYGPRKAELLVRY 144 (363)
Q Consensus 105 -~~~~l~~~~~i~~~Pt~-~~~~-~g~~~-~y~g~~~~~~i~~~ 144 (363)
.+..+...|++.+.|+- +++. +|+.. .+.|..+.+++.+.
T Consensus 132 D~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~ 175 (184)
T TIGR01626 132 DDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTV 175 (184)
T ss_pred CCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHH
Confidence 23346678899999777 5664 56654 47899988887663
No 110
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.77 E-value=3.6e-08 Score=71.13 Aligned_cols=70 Identities=31% Similarity=0.488 Sum_probs=52.8
Q ss_pred hHHHhHcCCCeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEe
Q 017971 52 NFDSAISSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM 125 (363)
Q Consensus 52 ~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 125 (363)
.+.++.+++++++|.|+++||+.|+.+...+ .++.+.+.+ ++....+|.++.....+ +...++|+++++.
T Consensus 9 al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~---~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ld 81 (82)
T PF13899_consen 9 ALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK---NFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH---CSEEEEEETTTHHHHHH-HHHCSSSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC---CEEEEEEEcCCCChhHH-hCCccCCEEEEeC
Confidence 3455567889999999999999999999887 344443444 39999999987665432 2227799999875
No 111
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=6.3e-08 Score=84.23 Aligned_cols=116 Identities=16% Similarity=0.240 Sum_probs=93.3
Q ss_pred cCCCCCeEEcChhhHHHhHcCCC---eEEEEEECC----CChhhhhHHHHHHHHHHHhhcCC-----CCeEEEEEeCccc
Q 017971 39 FKIDGKVIELDESNFDSAISSFD---YILVDFYAP----WCGHCKRLAPQLDEAAPILAKLK-----EPIVIAKVDADKY 106 (363)
Q Consensus 39 ~~~~~~v~~l~~~~f~~~l~~~~---~~lv~fy~~----~C~~C~~~~~~~~~~a~~~~~~~-----~~v~~~~vd~~~~ 106 (363)
.+.+..|+.+|+++|.+++..+. ..+|+|.|. .|.-|+.+..++.-+|+.+...+ .++-|+.||.++.
T Consensus 36 ~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~ 115 (331)
T KOG2603|consen 36 WTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES 115 (331)
T ss_pred ccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc
Confidence 47789999999999999996432 567888885 59999999999999998876432 3789999999999
Q ss_pred hhhhhhCCcCcCCEEEEEeCC--EEE---e---ecCCCCHHHHHHHHHhhcCCCce
Q 017971 107 SRLASKQEIDAFPTLKIFMHG--IPT---E---YYGPRKAELLVRYLKKFVAPDVS 154 (363)
Q Consensus 107 ~~l~~~~~i~~~Pt~~~~~~g--~~~---~---y~g~~~~~~i~~~i~~~~~~~v~ 154 (363)
+++.+.++++..|++++|.+. ++. . ++-...+|++.+|+.+.+.-.+.
T Consensus 116 p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~ 171 (331)
T KOG2603|consen 116 PQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR 171 (331)
T ss_pred HHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence 999999999999999999543 221 1 22234499999999998875554
No 112
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.74 E-value=3.2e-08 Score=76.27 Aligned_cols=60 Identities=25% Similarity=0.417 Sum_probs=42.9
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEE---eCccchhhhhhCCcCcCCEE
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV---DADKYSRLASKQEIDAFPTL 121 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~v---d~~~~~~l~~~~~i~~~Pt~ 121 (363)
++++++|.||++||++|++..|.++++++.+.+. +.+..+ +.++...+++++++..+|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~---~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW---LDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC---cEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 4689999999999999999999999998776432 444444 22233456666666666654
No 113
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.68 E-value=3.1e-07 Score=79.46 Aligned_cols=90 Identities=13% Similarity=0.089 Sum_probs=65.8
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-------c----hhhh-hhCC------------
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------Y----SRLA-SKQE------------ 114 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------~----~~l~-~~~~------------ 114 (363)
++++++|.||++||+.|+...|.+.++.+++++.+ +.+..|+|+. . .+++ ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~ 175 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVN 175 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCC
Confidence 46899999999999999999999999999887543 8888888741 1 1222 2222
Q ss_pred ----------------------cCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971 115 ----------------------IDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFVA 150 (363)
Q Consensus 115 ----------------------i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~~ 150 (363)
+...|+.+++ ++|+.+ .|.|..+.++|.+.|++.+.
T Consensus 176 G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 176 GPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred cchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 1224677777 456665 48899999999888887653
No 114
>smart00594 UAS UAS domain.
Probab=98.67 E-value=1.4e-07 Score=73.52 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=65.9
Q ss_pred hHcCCCeEEEEEECCCChhhhhHHHHH-H--HHHHHhhcCCCCeEEEEEeCc--cchhhhhhCCcCcCCEEEEEeC-C--
Q 017971 56 AISSFDYILVDFYAPWCGHCKRLAPQL-D--EAAPILAKLKEPIVIAKVDAD--KYSRLASKQEIDAFPTLKIFMH-G-- 127 (363)
Q Consensus 56 ~l~~~~~~lv~fy~~~C~~C~~~~~~~-~--~~a~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~~-g-- 127 (363)
+.+++++.+|+|+++||+.|+.+.... . ++.+.+++ ++.+..+|.+ +..+++..|++.++|++.++.. |
T Consensus 23 Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~ 99 (122)
T smart00594 23 ASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQ 99 (122)
T ss_pred HHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCc
Confidence 336678999999999999999988763 2 23344433 4888777765 4567899999999999999953 3
Q ss_pred E---EE-eecCCCCHHHHHHHH
Q 017971 128 I---PT-EYYGPRKAELLVRYL 145 (363)
Q Consensus 128 ~---~~-~y~g~~~~~~i~~~i 145 (363)
. .+ ...|..+++++++++
T Consensus 100 ~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 100 RVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred eeEEEeccccCCCCHHHHHHhh
Confidence 1 22 478999999998875
No 115
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.64 E-value=1e-07 Score=74.04 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=47.1
Q ss_pred HHHhHcCCCeEEEEEECCCChhhhhHHHHHHH---HHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEe-CCE
Q 017971 53 FDSAISSFDYILVDFYAPWCGHCKRLAPQLDE---AAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM-HGI 128 (363)
Q Consensus 53 f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~---~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~-~g~ 128 (363)
++.+.+++++++|.||++||++|+++....-+ +.+.+++ ++....++.+....-....+ .++||++++. +|+
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~ 91 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLT 91 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccCCCCcCccC-cccCeEEEECCCCC
Confidence 34444788999999999999999999987532 3333322 36655666542211111233 7899999995 454
Q ss_pred E
Q 017971 129 P 129 (363)
Q Consensus 129 ~ 129 (363)
.
T Consensus 92 v 92 (130)
T cd02960 92 V 92 (130)
T ss_pred C
Confidence 3
No 116
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.58 E-value=5.1e-07 Score=76.63 Aligned_cols=63 Identities=14% Similarity=0.263 Sum_probs=46.7
Q ss_pred CccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971 33 SEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (363)
Q Consensus 33 ~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~ 104 (363)
.++....+.++..+.|++ + ++++++|.||++||+.|++..|.+.++.+.+.+.+ +.+..|+|+
T Consensus 19 ~pdf~l~d~~G~~vsL~~--~-----kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~ 81 (199)
T PTZ00056 19 IYDYTVKTLEGTTVPMSS--L-----KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTS 81 (199)
T ss_pred CCceEEECCCCCEEeHHH--h-----CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecch
Confidence 344444444555444432 2 46899999999999999999999999999887543 888888873
No 117
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.56 E-value=4.8e-07 Score=72.98 Aligned_cols=98 Identities=23% Similarity=0.399 Sum_probs=66.8
Q ss_pred CCCCccccccC--CCCCeEEcChhhHHHhHcCCCeEEEEEECC-CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc--
Q 017971 30 GLSSEEETKFK--IDGKVIELDESNFDSAISSFDYILVDFYAP-WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-- 104 (363)
Q Consensus 30 ~~~~~~~~~~~--~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~-~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-- 104 (363)
|...|+..... .++..+.+++- ++++++|.||++ ||++|+...|.+.++.+.++..+ +.+..|..+
T Consensus 3 G~~~P~~~~~~~~~~g~~~~l~~~-------~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~ 73 (146)
T PF08534_consen 3 GDKAPDFSLKDLDLDGKPVSLSDF-------KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDD 73 (146)
T ss_dssp TSB--CCEEEEEETTSEEEEGGGG-------TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSS
T ss_pred CCCCCCeEEEeecCCCCEecHHHh-------CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCC
Confidence 33444444432 55556666552 678999999999 99999999999999988876554 555555433
Q ss_pred -------------------cchhhhhhCCcC---------cCCEEEEEe-CCEEEe-ecCCC
Q 017971 105 -------------------KYSRLASKQEID---------AFPTLKIFM-HGIPTE-YYGPR 136 (363)
Q Consensus 105 -------------------~~~~l~~~~~i~---------~~Pt~~~~~-~g~~~~-y~g~~ 136 (363)
.+..+.++|++. ++|+++++. +|+... ..|..
T Consensus 74 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~ 135 (146)
T PF08534_consen 74 PPVREFLKKYGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPD 135 (146)
T ss_dssp HHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSB
T ss_pred HHHHHHHHhhCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCC
Confidence 334678889988 999998886 454432 44543
No 118
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.54 E-value=4.5e-07 Score=71.22 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=56.2
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc---------------------------cchhhhh
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---------------------------KYSRLAS 111 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---------------------------~~~~l~~ 111 (363)
++++++|.||++||+.|++..|.+.++.+++++. ++.+..|+.. ....+.+
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~ 99 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD--GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWR 99 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC--CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHH
Confidence 4589999999999999999999999999988753 3666666541 1234667
Q ss_pred hCCcCcCCEEEEEe-CCEEE-eecC
Q 017971 112 KQEIDAFPTLKIFM-HGIPT-EYYG 134 (363)
Q Consensus 112 ~~~i~~~Pt~~~~~-~g~~~-~y~g 134 (363)
.|++.++|+.+++. +|+.. .+.|
T Consensus 100 ~~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 100 AYGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred HhCCCcCCeEEEECCCCcEEEEEec
Confidence 78999999999995 55543 2444
No 119
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.52 E-value=7.3e-07 Score=67.05 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=79.6
Q ss_pred CCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971 253 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 331 (363)
Q Consensus 253 p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~ 331 (363)
|.+.++|..++......++++++.|+. ......+.+...+.++|+++++ +.|+.+|+++++.+++.+++ ...|++
T Consensus 1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a-~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~ 76 (101)
T cd03003 1 PEIVTLDRGDFDAAVNSGEIWFVNFYS-PRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGV---NSYPSL 76 (101)
T ss_pred CCeEEcCHhhHHHHhcCCCeEEEEEEC-CCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCC---CccCEE
Confidence 456788888998877666777766664 4667778899999999999987 89999999999999999999 689999
Q ss_pred EEEeCCCCeeEEEEEEeehhhhhH
Q 017971 332 VVWDGNENYLTVSINVLKTRVCFF 355 (363)
Q Consensus 332 vi~~~~~~y~~~~~~~~~~~~~~~ 355 (363)
+++..........|....+.+..|
T Consensus 77 ~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 77 YVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EEEcCCCCcccCCCCCCHHHHHhh
Confidence 999655456667777777776665
No 120
>PLN02412 probable glutathione peroxidase
Probab=98.51 E-value=1.8e-06 Score=71.35 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=72.1
Q ss_pred CccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-------
Q 017971 33 SEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK------- 105 (363)
Q Consensus 33 ~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~------- 105 (363)
.|+....+.++..+.|+ ++ .+++++|.||++||+.|++..|.+.++.+++++.+ +.+..|+|+.
T Consensus 9 ~pdf~l~d~~G~~v~l~--~~-----~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~~~~ 79 (167)
T PLN02412 9 IYDFTVKDIGGNDVSLN--QY-----KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQEPG 79 (167)
T ss_pred CCceEEECCCCCEEeHH--Hh-----CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccCCCC
Confidence 34444444455444443 22 45899999999999999999999999999987653 8888887742
Q ss_pred c-hhh----hhhCC----------------------------------cCcCCEEEEE-eCCEEE-eecCCCCHHHHHHH
Q 017971 106 Y-SRL----ASKQE----------------------------------IDAFPTLKIF-MHGIPT-EYYGPRKAELLVRY 144 (363)
Q Consensus 106 ~-~~l----~~~~~----------------------------------i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~ 144 (363)
. .++ +++++ +.+.|+.+++ ++|+.+ .+.|..+.+.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~ 159 (167)
T PLN02412 80 SNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKD 159 (167)
T ss_pred CHHHHHHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHH
Confidence 1 121 23322 2234666666 456555 37788888888888
Q ss_pred HHhhcC
Q 017971 145 LKKFVA 150 (363)
Q Consensus 145 i~~~~~ 150 (363)
|+..+.
T Consensus 160 i~~~l~ 165 (167)
T PLN02412 160 IQNLLG 165 (167)
T ss_pred HHHHHh
Confidence 777653
No 121
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.51 E-value=2.9e-06 Score=70.40 Aligned_cols=91 Identities=16% Similarity=0.213 Sum_probs=66.5
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-----------------------------chhh
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-----------------------------YSRL 109 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-----------------------------~~~l 109 (363)
++++++|.||++||+.|....+.+.++.+++.+. ++.+..|.++. +..+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~--~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~ 101 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK--GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEV 101 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC--CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHH
Confidence 5689999999999999999999999999988643 37777777643 2245
Q ss_pred hhhCCcCcCCEEEEEeCCEEEeecC-----------CCCHHHHHHHHHhhcCC
Q 017971 110 ASKQEIDAFPTLKIFMHGIPTEYYG-----------PRKAELLVRYLKKFVAP 151 (363)
Q Consensus 110 ~~~~~i~~~Pt~~~~~~g~~~~y~g-----------~~~~~~i~~~i~~~~~~ 151 (363)
++.|++...|+++++..+..+.|.| ..+.+++.+-|...+..
T Consensus 102 ~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 102 AKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 6788999999999996443444443 23446666666555543
No 122
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.50 E-value=7.6e-07 Score=62.46 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=52.8
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhCCcCcCCEEEEEeCCEEEeecCCCCHH
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEIDAFPTLKIFMHGIPTEYYGPRKAE 139 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~ 139 (363)
+..|+++||++|++..+.+.+. ++.+..+|.++++. +++.+++.++|++.+. |+. ..| .+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~--~~g-~~~~ 67 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI--IVG-FDPE 67 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE--Eee-CCHH
Confidence 5679999999999998877641 27788899987654 5667999999999985 543 445 4678
Q ss_pred HHHHHHH
Q 017971 140 LLVRYLK 146 (363)
Q Consensus 140 ~i~~~i~ 146 (363)
.|.+|++
T Consensus 68 ~i~~~i~ 74 (74)
T TIGR02196 68 KLDQLLE 74 (74)
T ss_pred HHHHHhC
Confidence 8887763
No 123
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.49 E-value=2e-06 Score=64.66 Aligned_cols=98 Identities=7% Similarity=0.184 Sum_probs=84.1
Q ss_pred ccCChhhHHhhhcC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971 256 VPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (363)
Q Consensus 256 ~~lt~~~~~~l~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi 333 (363)
..+|.+++...... ++++++.|+ .......+.+...+.++++.+++ +.|+.+|+...+.+++.+++ ...|++++
T Consensus 2 ~~lt~~~f~~~i~~~~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~~ 77 (103)
T PF00085_consen 2 IVLTDENFEKFINESDKPVVVYFY-APWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGV---KSVPTIIF 77 (103)
T ss_dssp EEESTTTHHHHHTTTSSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTC---SSSSEEEE
T ss_pred EECCHHHHHHHHHccCCCEEEEEe-CCCCCccccccceecccccccccccccchhhhhccchhhhccCC---CCCCEEEE
Confidence 46788888886665 666766666 45788889999999999999994 99999999999999999999 78999999
Q ss_pred EeCCCCeeEEEEEEeehhhhhHhh
Q 017971 334 WDGNENYLTVSINVLKTRVCFFML 357 (363)
Q Consensus 334 ~~~~~~y~~~~~~~~~~~~~~~~~ 357 (363)
++.++......+....+.+..|+.
T Consensus 78 ~~~g~~~~~~~g~~~~~~l~~~i~ 101 (103)
T PF00085_consen 78 FKNGKEVKRYNGPRNAESLIEFIE 101 (103)
T ss_dssp EETTEEEEEEESSSSHHHHHHHHH
T ss_pred EECCcEEEEEECCCCHHHHHHHHH
Confidence 999887778889999999999875
No 124
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.47 E-value=1.6e-06 Score=65.47 Aligned_cols=100 Identities=15% Similarity=0.223 Sum_probs=78.7
Q ss_pred CCcccCChhhHHhhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971 253 PLSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK 330 (363)
Q Consensus 253 p~~~~lt~~~~~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~ 330 (363)
|.+.+++..+++... ..++++++.|+ .......+.+...+.+++.++++ +.|+.+|++.++.+++.+|+ ...|+
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i---~~~Pt 76 (104)
T cd03004 1 PSVITLTPEDFPELVLNRKEPWLVDFY-APWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANI---RAYPT 76 (104)
T ss_pred CcceEcCHHHHHHHHhcCCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCC---CcccE
Confidence 346678888888754 44556666665 44677788899999999999877 99999999999999999999 68999
Q ss_pred EEEEeCC-CCeeEEEEEEe-ehhhhhHh
Q 017971 331 MVVWDGN-ENYLTVSINVL-KTRVCFFM 356 (363)
Q Consensus 331 ~vi~~~~-~~y~~~~~~~~-~~~~~~~~ 356 (363)
+++++.+ +......|... .+.+..|+
T Consensus 77 ~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 9999987 56667777665 66666653
No 125
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.46 E-value=1.6e-06 Score=67.65 Aligned_cols=93 Identities=20% Similarity=0.344 Sum_probs=68.6
Q ss_pred CCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECC-CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-----
Q 017971 31 LSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAP-WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----- 104 (363)
Q Consensus 31 ~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~-~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----- 104 (363)
...|+....+.++..+.|++- .+++++|.||+. ||++|+...+.+.++.+.++..+ +.+..|..+
T Consensus 3 ~~~P~f~l~~~~g~~~~l~~l-------~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~~~~~ 73 (124)
T PF00578_consen 3 DKAPDFTLTDSDGKTVSLSDL-------KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDDPEEI 73 (124)
T ss_dssp SBGGCEEEETTTSEEEEGGGG-------TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSSHHHH
T ss_pred CCCCCcEeECCCCCEEEHHHH-------CCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeecccccccch
Confidence 344555555555555666433 558999999999 99999999999999999887543 777777654
Q ss_pred ----------------cchhhhhhCCcC------cCCEEEEEeCCEEEee
Q 017971 105 ----------------KYSRLASKQEID------AFPTLKIFMHGIPTEY 132 (363)
Q Consensus 105 ----------------~~~~l~~~~~i~------~~Pt~~~~~~g~~~~y 132 (363)
.+..+++.|++. .+|+.+++..+..+.|
T Consensus 74 ~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 74 KQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp HHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred hhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 234577778888 8899998877655554
No 126
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.43 E-value=2.2e-06 Score=64.56 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=79.4
Q ss_pred cccCChhhHHhhhcC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971 255 SVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (363)
Q Consensus 255 ~~~lt~~~~~~l~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v 332 (363)
+.+++..++...... +.++++.|+ .......+++...+.+++.++++ +.|+.+|++.++.+++.+++ .+.|+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i---~~~P~~~ 77 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFY-APWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGV---RGFPTIK 77 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCC---CccCEEE
Confidence 346777888875444 444555555 55677788889999999998877 99999999999999999999 6799999
Q ss_pred EEeCC-CCeeEEEEEEeehhhhhHhh
Q 017971 333 VWDGN-ENYLTVSINVLKTRVCFFML 357 (363)
Q Consensus 333 i~~~~-~~y~~~~~~~~~~~~~~~~~ 357 (363)
+++.+ ......++....+.+..||+
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~l~~~~~ 103 (103)
T cd03001 78 VFGAGKNSPQDYQGGRTAKAIVSAAL 103 (103)
T ss_pred EECCCCcceeecCCCCCHHHHHHHhC
Confidence 99877 56778888899998988874
No 127
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.37 E-value=1.5e-06 Score=58.62 Aligned_cols=60 Identities=38% Similarity=0.741 Sum_probs=51.1
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhh---hCCcCcCCEEEEEeCC
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS---KQEIDAFPTLKIFMHG 127 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~Pt~~~~~~g 127 (363)
++.||++||++|++..+.+.++ +. ...++.+..+|++....... .+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-AL---LNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-Hh---hCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999988 22 23359999999999887765 8899999999999876
No 128
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.35 E-value=2.2e-06 Score=65.59 Aligned_cols=68 Identities=34% Similarity=0.623 Sum_probs=60.7
Q ss_pred CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-cchhhhhhCC--cCcCCEEEEEeCCEEE
Q 017971 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-KYSRLASKQE--IDAFPTLKIFMHGIPT 130 (363)
Q Consensus 60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-~~~~l~~~~~--i~~~Pt~~~~~~g~~~ 130 (363)
++++++.||++||++|+...|.+.++++.+.. .+.+..+|.. .++.+...++ +..+|++.++.++...
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 102 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV 102 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchh
Confidence 67999999999999999999999999988765 4889999997 7899999999 9999999988887654
No 129
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.32 E-value=7.7e-06 Score=72.10 Aligned_cols=102 Identities=24% Similarity=0.363 Sum_probs=73.6
Q ss_pred CCCeEEcC-hhhHHHhHcC---CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc
Q 017971 42 DGKVIELD-ESNFDSAISS---FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA 117 (363)
Q Consensus 42 ~~~v~~l~-~~~f~~~l~~---~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~ 117 (363)
-+.|.+++ .+.|-+.+++ ...++|.||.+.++.|+.+...+..+|..+.. +.|.+|..+..+ ++..|.+..
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~~-~~~~f~~~~ 198 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKCP-ASENFPDKN 198 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGCC-TTTTS-TTC
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhccC-cccCCcccC
Confidence 36788996 4788888843 34689999999999999999999999987654 999999987765 788999999
Q ss_pred CCEEEEEeCCEEEe-ecC-------CCCHHHHHHHHHhh
Q 017971 118 FPTLKIFMHGIPTE-YYG-------PRKAELLVRYLKKF 148 (363)
Q Consensus 118 ~Pt~~~~~~g~~~~-y~g-------~~~~~~i~~~i~~~ 148 (363)
.|++++|++|..+. +.| ..+.++|..|+.++
T Consensus 199 LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 199 LPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp -SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999999997653 332 34556666666655
No 130
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.31 E-value=6.3e-06 Score=58.36 Aligned_cols=73 Identities=27% Similarity=0.492 Sum_probs=55.9
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecC-CCCHHHHHH
Q 017971 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYG-PRKAELLVR 143 (363)
Q Consensus 65 v~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g-~~~~~~i~~ 143 (363)
|.+++++|++|..+...+++++..+. +.+-.+|..+.+++ .+|||.+.|++++ +|+ +.+.| ..+.+.|.+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~-~~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK-VVFVGRVPSKEELKE 73 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE-EEEESS--HHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE-EEEEecCCCHHHHHH
Confidence 44578899999999999999987652 66677777666777 9999999999965 564 56888 777888888
Q ss_pred HHH
Q 017971 144 YLK 146 (363)
Q Consensus 144 ~i~ 146 (363)
|+.
T Consensus 74 ~l~ 76 (76)
T PF13192_consen 74 LLE 76 (76)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 131
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=98.28 E-value=3.2e-06 Score=63.88 Aligned_cols=91 Identities=23% Similarity=0.350 Sum_probs=70.4
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcC-
Q 017971 153 VSILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQP- 226 (363)
Q Consensus 153 v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~- 226 (363)
+.++++..++++++..++ +.+|||+.+. ..+..+|..+++.+.|++ +.+..+.+.+++ .|.+++|++
T Consensus 2 ~~~i~s~~~l~~f~~~~~---~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~--~~~~~~~~~~~~--~~~ivl~~p~ 74 (104)
T cd03069 2 SVELRTEAEFEKFLSDDD---ASVVGFFEDEDSKLLSEFLKAADTLRESFRFAH--TSDKQLLEKYGY--GEGVVLFRPP 74 (104)
T ss_pred ccccCCHHHHHHHhccCC---cEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEE--EChHHHHHhcCC--CCceEEEech
Confidence 567888889999998665 5888888542 458889999988887765 445677788888 588999954
Q ss_pred -----CCCCcccccCCCCHHHHHHHHHhh
Q 017971 227 -----SYNEHNIFYGPFDEEFLEEFIKQN 250 (363)
Q Consensus 227 -----~~~~~~~~~g~~~~~~l~~fi~~~ 250 (363)
.++....|.|+++.++|.+||..+
T Consensus 75 ~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 75 RLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 234556799999999999999875
No 132
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.27 E-value=5.6e-06 Score=67.27 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=36.7
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~ 104 (363)
++++++|.||++||+ |+...|.+.++.+++++. ++.+..|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~--~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR--GLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC--CEEEEEeccC
Confidence 468999999999999 999999999999988654 3888778763
No 133
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.27 E-value=7.4e-06 Score=61.87 Aligned_cols=95 Identities=13% Similarity=0.039 Sum_probs=77.2
Q ss_pred CcccCChhhHHhhhcCCCcEEEEEEeCC-ChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971 254 LSVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 331 (363)
Q Consensus 254 ~~~~lt~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~ 331 (363)
.++++|..|++.....+.++++.|..+- .......+...+.++|+++++ +.|+.+|.++++.++..|++ ...|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V---~sIPTl 87 (111)
T cd02965 11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGV---LRTPAL 87 (111)
T ss_pred CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCC---CcCCEE
Confidence 4678888999987777778877776442 577788899999999999998 88999999999999999999 789999
Q ss_pred EEEeCCCCeeEEEEEEeehh
Q 017971 332 VVWDGNENYLTVSINVLKTR 351 (363)
Q Consensus 332 vi~~~~~~y~~~~~~~~~~~ 351 (363)
++++.........|.+.+.+
T Consensus 88 i~fkdGk~v~~~~G~~~~~e 107 (111)
T cd02965 88 LFFRDGRYVGVLAGIRDWDE 107 (111)
T ss_pred EEEECCEEEEEEeCccCHHH
Confidence 99997755556566555443
No 134
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.27 E-value=4.3e-06 Score=59.27 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=48.0
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh-----CCcCcCCEEEEEeCCEEEeecCCCCH
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK-----QEIDAFPTLKIFMHGIPTEYYGPRKA 138 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~-----~~i~~~Pt~~~~~~g~~~~y~g~~~~ 138 (363)
++.|+++||++|++..+.+.+.. +.+-.+|.++++..... +++.++|++ ++.+|..+. ..+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~---------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~ 68 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG---------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSA 68 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC---------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCH
Confidence 57899999999999999876542 44567888877766555 388999997 467775432 3334
Q ss_pred HHHHHHH
Q 017971 139 ELLVRYL 145 (363)
Q Consensus 139 ~~i~~~i 145 (363)
.++.+.+
T Consensus 69 ~~~~~~l 75 (77)
T TIGR02200 69 AQVKAKL 75 (77)
T ss_pred HHHHHHh
Confidence 4444443
No 135
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.26 E-value=9.3e-06 Score=69.58 Aligned_cols=84 Identities=19% Similarity=0.194 Sum_probs=65.6
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc---------cchhhhhhCCcCcCCEEEEEeCCE-
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---------KYSRLASKQEIDAFPTLKIFMHGI- 128 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---------~~~~l~~~~~i~~~Pt~~~~~~g~- 128 (363)
.++..|+.||.+.|++|+.+.|.+..+++.+ +-.|....+|.. .++.++++++|..+|++++...+.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~ 195 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTK 195 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCC
Confidence 4579999999999999999999999999876 222444444432 467899999999999999997643
Q ss_pred -EEe-ecCCCCHHHHHHHH
Q 017971 129 -PTE-YYGPRKAELLVRYL 145 (363)
Q Consensus 129 -~~~-y~g~~~~~~i~~~i 145 (363)
... -.|..+.++|.+-|
T Consensus 196 ~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 196 KWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred eEEEEeeecCCHHHHHHhh
Confidence 333 57999998887643
No 136
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=98.26 E-value=4.1e-06 Score=63.04 Aligned_cols=94 Identities=19% Similarity=0.292 Sum_probs=72.5
Q ss_pred CceecCChHHHHHHHH-hcCCcccEEEeecCC--h---hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEc
Q 017971 152 DVSILNSDAEVSDFVE-NAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQ 225 (363)
Q Consensus 152 ~v~~i~~~~~~~~~~~-~~~~~~~~~v~~~~~--~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~ 225 (363)
++..|++..++++++. +++ +.+|||+.+ + ..+.++|..+++.+.|++ ..+.++...+++. .|.+++++
T Consensus 1 ~v~~i~~~~~~e~~~~~~~~---~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~--~~~~~~~~~~~~~-~~~i~l~~ 74 (102)
T cd03066 1 PVEIINSERELQAFENIEDD---IKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFA--TFDSKVAKKLGLK-MNEVDFYE 74 (102)
T ss_pred CceEcCCHHHHHHHhcccCC---eEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEE--ECcHHHHHHcCCC-CCcEEEeC
Confidence 3567888889999997 665 578888854 2 358889999988887765 4456777778776 58888887
Q ss_pred CCCCCcccc-cCCCCHHHHHHHHHhhc
Q 017971 226 PSYNEHNIF-YGPFDEEFLEEFIKQNF 251 (363)
Q Consensus 226 ~~~~~~~~~-~g~~~~~~l~~fi~~~~ 251 (363)
+.++....| .|..+.+.|.+||..+.
T Consensus 75 ~~~e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 75 PFMEEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCCCCcccCCCCCCHHHHHHHHHHhc
Confidence 755666678 78889999999998763
No 137
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.25 E-value=3.8e-06 Score=62.60 Aligned_cols=91 Identities=25% Similarity=0.356 Sum_probs=70.8
Q ss_pred eecCChHHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcCCC
Q 017971 154 SILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSY 228 (363)
Q Consensus 154 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~ 228 (363)
.++++..++++++...+ +++|+|+.+. ..+..+|..+++...|+.. .+.++.+.+++. .|++++|++.+
T Consensus 2 ~~i~s~~~l~~~~~~~~---~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~--~~~~~~~~~~~~-~~~i~l~~~~~ 75 (97)
T cd02981 2 KELTSKEELEKFLDKDD---VVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHT--SDKEVAKKLKVK-PGSVVLFKPFE 75 (97)
T ss_pred eecCCHHHHHHHhccCC---eEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEE--ChHHHHHHcCCC-CCceEEeCCcc
Confidence 46778888988887665 6888888542 3588899999887666543 356777777776 48899999877
Q ss_pred CCcccccCCCCHHHHHHHHHhh
Q 017971 229 NEHNIFYGPFDEEFLEEFIKQN 250 (363)
Q Consensus 229 ~~~~~~~g~~~~~~l~~fi~~~ 250 (363)
+....|.|.++.++|.+||..+
T Consensus 76 ~~~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 76 EEPVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred cCCccCCCCCCHHHHHHHHHhC
Confidence 7778899999999999999864
No 138
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.25 E-value=1.1e-05 Score=60.16 Aligned_cols=88 Identities=18% Similarity=0.274 Sum_probs=71.1
Q ss_pred hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC--C
Q 017971 50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH--G 127 (363)
Q Consensus 50 ~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~--g 127 (363)
.+.+++++...++++|-|+.++|+ .....|.++|+.+++. +.|+.+. ++++.+++++.. |++.+|++ .
T Consensus 7 ~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~---~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~ 76 (97)
T cd02981 7 KEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDD---YGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEE 76 (97)
T ss_pred HHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccC---CeEEEEC---hHHHHHHcCCCC-CceEEeCCccc
Confidence 344666788889999999999987 6788999999887653 8888877 567788887754 99999976 3
Q ss_pred EEEeecCCCCHHHHHHHHHh
Q 017971 128 IPTEYYGPRKAELLVRYLKK 147 (363)
Q Consensus 128 ~~~~y~g~~~~~~i~~~i~~ 147 (363)
....|.|..+.+.|.+|+..
T Consensus 77 ~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 77 EPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred CCccCCCCCCHHHHHHHHHh
Confidence 45679999999999999874
No 139
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.23 E-value=1.9e-05 Score=64.19 Aligned_cols=43 Identities=19% Similarity=0.064 Sum_probs=37.8
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~ 103 (363)
++++++|.||++||+.|++..|.+.++.+++... ++.+..++|
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~--~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS--HFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC--CeEEEEEec
Confidence 5688999999999999999999999999998754 388888887
No 140
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.23 E-value=2.9e-05 Score=76.69 Aligned_cols=177 Identities=16% Similarity=0.163 Sum_probs=117.7
Q ss_pred CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEe-CCE--EEeecCCC
Q 017971 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM-HGI--PTEYYGPR 136 (363)
Q Consensus 60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~-~g~--~~~y~g~~ 136 (363)
++..++.|+.+.|..|..+...+++++.. .+++.+-..|..++.+++++|++...|++.++. +|+ .++|.|-.
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~~----s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P 441 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFASL----SEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVP 441 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHHhc----CCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecC
Confidence 35578889999999999988888888743 345888889999999999999999999999995 553 47899988
Q ss_pred CHHHHHHHHHhhcCCC--ceecCChHHHHHHHHhcCCcccEEEeec---CChhH----HHHHHHHhhhhhHHHHhhhcch
Q 017971 137 KAELLVRYLKKFVAPD--VSILNSDAEVSDFVENAGTFFPLFIGFG---LDESV----MSNLALKYKKKAWFAVAKDFSE 207 (363)
Q Consensus 137 ~~~~i~~~i~~~~~~~--v~~i~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~----~~~~a~~~~~~~~~~~~~~~~~ 207 (363)
.-.++..|+.....-+ -..+ +++ ..+.+..-+...-+-++.. +..+. ...++....+...-.+.....+
T Consensus 442 ~G~Ef~s~i~~i~~~~~~~~~l-~~~-~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~ 519 (555)
T TIGR03143 442 SGHELNSFILALYNAAGPGQPL-GEE-LLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFP 519 (555)
T ss_pred ccHhHHHHHHHHHHhcCCCCCC-CHH-HHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccH
Confidence 8888888887775432 2233 333 4444444322111112222 23222 3334433321110001123457
Q ss_pred hhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHH
Q 017971 208 DTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFI 247 (363)
Q Consensus 208 ~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi 247 (363)
+++..|++.+.|++++ +....+.|..+.+++.+|+
T Consensus 520 ~~~~~~~v~~vP~~~i-----~~~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 520 DLKDEYGIMSVPAIVV-----DDQQVYFGKKTIEEMLELI 554 (555)
T ss_pred HHHHhCCceecCEEEE-----CCEEEEeeCCCHHHHHHhh
Confidence 7888999999999877 4446677988999999886
No 141
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.19 E-value=1.5e-05 Score=59.75 Aligned_cols=98 Identities=10% Similarity=0.127 Sum_probs=78.1
Q ss_pred CChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC---cEEEEEeccCchhHHhhcCCCCCCCCCeEEEE
Q 017971 258 INQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLPKMVVW 334 (363)
Q Consensus 258 lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~ 334 (363)
|+..++......++++++.|+. ......+.+...+.+++..+++ +.++.+|++..+.+++.+++ ...|+++++
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~-~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i---~~~P~~~~~ 76 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYA-PWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGV---SGFPTIKFF 76 (102)
T ss_pred CchhhHHHHhccCCcEEEEEEC-CCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCC---CcCCEEEEe
Confidence 4566777766666666666664 4667777778888888887764 99999999999999999999 679999999
Q ss_pred eCCCCeeEEEEEEeehhhhhHhhhh
Q 017971 335 DGNENYLTVSINVLKTRVCFFMLTL 359 (363)
Q Consensus 335 ~~~~~y~~~~~~~~~~~~~~~~~~~ 359 (363)
++++......+....+.++.|+...
T Consensus 77 ~~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 77 PKGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred cCCCcceeecCCCCHHHHHHHHHhc
Confidence 9988777788888888888888654
No 142
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.19 E-value=1.9e-05 Score=60.41 Aligned_cols=100 Identities=8% Similarity=0.036 Sum_probs=77.7
Q ss_pred CCcccCChhhHHhh---hcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHH-hhcCCCCCCC
Q 017971 253 PLSVPINQDTLNLL---KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFA-DTFEANKKSK 327 (363)
Q Consensus 253 p~~~~lt~~~~~~l---~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~-~~~gi~~~~~ 327 (363)
+.+.+++.+++... ...+.++++.|+ ..-....+.+...+.++|+++++ +.|+.||++.++..+ +.+++ .+
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I---~~ 84 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHF---FY 84 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCC---cc
Confidence 44668888898876 455566666666 34667778889999999999988 999999999888888 58998 67
Q ss_pred CCeEEEEeCCCCeeEEEEEEeehhhhhHh
Q 017971 328 LPKMVVWDGNENYLTVSINVLKTRVCFFM 356 (363)
Q Consensus 328 ~P~~vi~~~~~~y~~~~~~~~~~~~~~~~ 356 (363)
.|++.++...+.-....+...++.+..||
T Consensus 85 ~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 85 FPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 99999997654455666777777777654
No 143
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.18 E-value=1.4e-05 Score=60.90 Aligned_cols=99 Identities=8% Similarity=0.086 Sum_probs=77.3
Q ss_pred cccCChhhHHhhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccC--chhHHhhcCCCCCCCCCe
Q 017971 255 SVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLPK 330 (363)
Q Consensus 255 ~~~lt~~~~~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~--~~~~~~~~gi~~~~~~P~ 330 (363)
+.+++..++.... ..+.++++.|+ .......+.+...+.++|+.+++ +.|+.+|+++ .+.+++.+++ ...|+
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i---~~~Pt 77 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV---QGFPT 77 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC---CcCCE
Confidence 4577888888754 44555666665 44677778888899999998887 8899999988 7889999999 67999
Q ss_pred EEEEeCCC-----CeeEEEEEEeehhhhhHhh
Q 017971 331 MVVWDGNE-----NYLTVSINVLKTRVCFFML 357 (363)
Q Consensus 331 ~vi~~~~~-----~y~~~~~~~~~~~~~~~~~ 357 (363)
++++++++ .-+...|....+.+..|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 78 LKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 99999886 3456678888888888764
No 144
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.17 E-value=2.1e-05 Score=58.69 Aligned_cols=98 Identities=8% Similarity=0.142 Sum_probs=73.5
Q ss_pred ChhhHHhhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeC
Q 017971 259 NQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (363)
Q Consensus 259 t~~~~~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~ 336 (363)
+.+.+.... ..++++++.|+ .........+...++++++.+++ +.|+.+|++..+.+++.||+ ...|++++++.
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~P~~~~~~~ 77 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFW-APWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI---RSIPTLLLFKN 77 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC---CcCCEEEEEeC
Confidence 344555533 33446666666 44666677788889999888876 99999999998899999999 67999999976
Q ss_pred CCCeeEEEEEEeehhhhhHhhhhh
Q 017971 337 NENYLTVSINVLKTRVCFFMLTLL 360 (363)
Q Consensus 337 ~~~y~~~~~~~~~~~~~~~~~~~~ 360 (363)
.+......+....+.+..|+.+.|
T Consensus 78 g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 78 GKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred CcEeeeecCCCCHHHHHHHHHhhC
Confidence 555556667777788998887754
No 145
>PRK10996 thioredoxin 2; Provisional
Probab=98.16 E-value=2.4e-05 Score=62.50 Aligned_cols=100 Identities=13% Similarity=0.188 Sum_probs=79.6
Q ss_pred cCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEe
Q 017971 257 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWD 335 (363)
Q Consensus 257 ~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~ 335 (363)
+++..+++.+...++++++.|+. ......+.+...+.++++++.+ +.|+.+|.++.+.+++.+++ .+.|++++++
T Consensus 39 ~~~~~~~~~~i~~~k~vvv~F~a-~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V---~~~Ptlii~~ 114 (139)
T PRK10996 39 NATGETLDKLLQDDLPVVIDFWA-PWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRI---RSIPTIMIFK 114 (139)
T ss_pred EcCHHHHHHHHhCCCeEEEEEEC-CCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCC---CccCEEEEEE
Confidence 46667777766666677776664 4667777788899999988776 99999999999999999999 6899999998
Q ss_pred CCCCeeEEEEEEeehhhhhHhhhhh
Q 017971 336 GNENYLTVSINVLKTRVCFFMLTLL 360 (363)
Q Consensus 336 ~~~~y~~~~~~~~~~~~~~~~~~~~ 360 (363)
..+......+....+.++.++.+.|
T Consensus 115 ~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 115 NGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 5555666678888888999888754
No 146
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.12 E-value=6.7e-06 Score=65.25 Aligned_cols=73 Identities=25% Similarity=0.442 Sum_probs=57.5
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-------------------------hhhhhhC
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------------------------SRLASKQ 113 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------------------------~~l~~~~ 113 (363)
+++.+.++|.|.||++|+.|-|.+.++-+.++..+..+-+.-|+-+.+ .+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 459999999999999999999999999988887655555555543322 3688899
Q ss_pred CcCcCCEEEEEeC-CEEEe
Q 017971 114 EIDAFPTLKIFMH-GIPTE 131 (363)
Q Consensus 114 ~i~~~Pt~~~~~~-g~~~~ 131 (363)
+|.+.|++++.+. |+.+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 9999999999864 55554
No 147
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.10 E-value=5.6e-05 Score=63.62 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=70.6
Q ss_pred CCCCccccccC-CCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc---
Q 017971 30 GLSSEEETKFK-IDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD--- 104 (363)
Q Consensus 30 ~~~~~~~~~~~-~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~--- 104 (363)
|..+|+...++ .++....++.++| .+++++|.|| +.||+.|....|.+.++.+++.+.+ +.+..|.++
T Consensus 5 G~~aP~f~l~~~~~g~~~~~sl~d~-----~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~~ 77 (187)
T TIGR03137 5 NTEIKPFKATAYHNGEFVEVTDEDV-----KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTHF 77 (187)
T ss_pred CCcCCCcEeeeccCCceeEecHHHH-----CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCHH
Confidence 33445544443 3444445555544 4578999999 9999999999999999998887544 334333332
Q ss_pred ----------------------cchhhhhhCCcC------cCCEEEEEe-CCEEEe-e--cC--CCCHHHHHHHHH
Q 017971 105 ----------------------KYSRLASKQEID------AFPTLKIFM-HGIPTE-Y--YG--PRKAELLVRYLK 146 (363)
Q Consensus 105 ----------------------~~~~l~~~~~i~------~~Pt~~~~~-~g~~~~-y--~g--~~~~~~i~~~i~ 146 (363)
....+++.|++. ..|+.+++. +|+... + .+ .+..+++.+.++
T Consensus 78 ~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 78 VHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred HHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 234677788886 358888885 565432 2 11 346777776654
No 148
>PRK09381 trxA thioredoxin; Provisional
Probab=98.10 E-value=4.2e-05 Score=58.22 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=80.2
Q ss_pred cccCChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971 255 SVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (363)
Q Consensus 255 ~~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v 332 (363)
+.+++..++.. +...+.++++.|+. ........+...++++++++.+ +.|+.+|++..+.+++.+++ ...|+++
T Consensus 5 v~~~~~~~~~~~v~~~~~~vvv~f~~-~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~ 80 (109)
T PRK09381 5 IIHLTDDSFDTDVLKADGAILVDFWA-EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI---RGIPTLL 80 (109)
T ss_pred ceeeChhhHHHHHhcCCCeEEEEEEC-CCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC---CcCCEEE
Confidence 45667667764 44455666666664 4677788889999999999877 99999999998999999999 6799999
Q ss_pred EEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971 333 VWDGNENYLTVSINVLKTRVCFFMLTLL 360 (363)
Q Consensus 333 i~~~~~~y~~~~~~~~~~~~~~~~~~~~ 360 (363)
+++.........+....++++.++...|
T Consensus 81 ~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 9975445666777888888999988765
No 149
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.08 E-value=2.6e-05 Score=59.36 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=73.2
Q ss_pred cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC----C---CcEEEEEeccCchhHHhhcCCCCCCC
Q 017971 255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN----R---ELVFCYVGIKQFADFADTFEANKKSK 327 (363)
Q Consensus 255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~----~---~~~f~~vd~~~~~~~~~~~gi~~~~~ 327 (363)
+.+++.++++.....++++++.|+ ..-....+++...+.++|+.+ + .+.|+.+|+++++.+++.+|+ ..
T Consensus 3 v~~l~~~~f~~~i~~~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v---~~ 78 (108)
T cd02996 3 IVSLTSGNIDDILQSAELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI---NK 78 (108)
T ss_pred eEEcCHhhHHHHHhcCCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC---Cc
Confidence 457888999987777777666665 446666777888888877653 1 289999999999999999999 68
Q ss_pred CCeEEEEeCCC-CeeEEEEEEeehhhhhHh
Q 017971 328 LPKMVVWDGNE-NYLTVSINVLKTRVCFFM 356 (363)
Q Consensus 328 ~P~~vi~~~~~-~y~~~~~~~~~~~~~~~~ 356 (363)
.|+++++...+ ......+....+.+..|+
T Consensus 79 ~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 79 YPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999997544 235556666666666664
No 150
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.08 E-value=2.2e-05 Score=60.62 Aligned_cols=103 Identities=13% Similarity=0.159 Sum_probs=74.2
Q ss_pred CcccCChhhHHhhhcC-CCcEEEEEEeCCChh-hHH--HHHHHHHHHHHhC--CC-cEEEEEeccCchhHHhhcCCCCCC
Q 017971 254 LSVPINQDTLNLLKDD-KRKIVLAIVEDETEE-KSQ--KLVTTLKAAASAN--RE-LVFCYVGIKQFADFADTFEANKKS 326 (363)
Q Consensus 254 ~~~~lt~~~~~~l~~~-~~~~~i~~~~~~~~~-~~~--~~~~~l~~~a~~~--~~-~~f~~vd~~~~~~~~~~~gi~~~~ 326 (363)
.+..+|..|++..... ..++++.|...--.+ ..+ .....+.++|.++ .+ +.|+.||+++++++++.||+ .
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I---~ 86 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL---D 86 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC---c
Confidence 3567788888875444 445555554332211 123 4455666777776 44 99999999999999999999 7
Q ss_pred CCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971 327 KLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLL 360 (363)
Q Consensus 327 ~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~ 360 (363)
..|+++++... +.-...|...++.+..|+..++
T Consensus 87 ~iPTl~lfk~G-~~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 87 EEDSIYVFKDD-EVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cccEEEEEECC-EEEEeeCCCCHHHHHHHHHHHh
Confidence 89999999854 4445889999999999998765
No 151
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.06 E-value=1.5e-05 Score=69.34 Aligned_cols=82 Identities=16% Similarity=0.274 Sum_probs=60.3
Q ss_pred CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEE----------------------------------------
Q 017971 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA---------------------------------------- 99 (363)
Q Consensus 60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~---------------------------------------- 99 (363)
.+..++.|..+.|++|+++++++.++.+. +-.+.+.
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 35789999999999999999998876431 0011111
Q ss_pred --EEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhh
Q 017971 100 --KVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKF 148 (363)
Q Consensus 100 --~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~ 148 (363)
..+..++.++++++||+++|+++ +.+|+.+ .|..+.+.|.+++.+.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~--~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV--PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeEe--eCCCCHHHHHHHHHHc
Confidence 11223456789999999999999 6788655 7989999999998754
No 152
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.05 E-value=4e-05 Score=61.15 Aligned_cols=83 Identities=13% Similarity=0.074 Sum_probs=58.9
Q ss_pred CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC---------------------ccchhhhhhCCcC
Q 017971 59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA---------------------DKYSRLASKQEID 116 (363)
Q Consensus 59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~---------------------~~~~~l~~~~~i~ 116 (363)
++++++|.|| +.||+.|....|.+.++.+.+.+.+ +.+..|.. +.+..+.+.|++.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 99 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVW 99 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence 3689999999 5899999999999999998886533 55554433 2334677778888
Q ss_pred cC---------CEEEEEe-CCEEE-eecCCCCHHHHHH
Q 017971 117 AF---------PTLKIFM-HGIPT-EYYGPRKAELLVR 143 (363)
Q Consensus 117 ~~---------Pt~~~~~-~g~~~-~y~g~~~~~~i~~ 143 (363)
.. |+.+++. +|+.. .|.|....+.+.+
T Consensus 100 ~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~ 137 (140)
T cd03017 100 GEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE 137 (140)
T ss_pred cccccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence 87 8888886 46544 3677665555443
No 153
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.03 E-value=3.6e-05 Score=57.18 Aligned_cols=95 Identities=11% Similarity=0.160 Sum_probs=74.2
Q ss_pred cCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971 257 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN--RE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (363)
Q Consensus 257 ~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~--~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi 333 (363)
+++..++.....++++.++.|+. ......+.+...+.+++..+ .+ +.|+.+|+...+.+++.+++ ...|++++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i---~~~Pt~~~ 77 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYA-PWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGV---RGYPTIKL 77 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEEC-CCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCC---CCCCEEEE
Confidence 46677888877777777777764 45777788889999999888 34 99999999998999999999 67999999
Q ss_pred EeCC-CCeeEEEEEEeehhhhhH
Q 017971 334 WDGN-ENYLTVSINVLKTRVCFF 355 (363)
Q Consensus 334 ~~~~-~~y~~~~~~~~~~~~~~~ 355 (363)
++++ ......++......+..|
T Consensus 78 ~~~~~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 78 FPNGSKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred EcCCCcccccCCCCcCHHHHHhh
Confidence 9988 556666666555555544
No 154
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.02 E-value=3.5e-05 Score=58.00 Aligned_cols=97 Identities=12% Similarity=0.197 Sum_probs=75.4
Q ss_pred ccCChhhHHhhhcC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC--C-cEEEEEeccC-chhHHhhcCCCCCCCCCe
Q 017971 256 VPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQ-FADFADTFEANKKSKLPK 330 (363)
Q Consensus 256 ~~lt~~~~~~l~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~-~~f~~vd~~~-~~~~~~~~gi~~~~~~P~ 330 (363)
.+++..++...... ++++++.|. .......+++.+.+.++++.++ + +.|+.+|+.. ++.+++.+++ ...|+
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i---~~~P~ 78 (105)
T cd02998 3 VELTDSNFDKVVGDDKKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGV---SGFPT 78 (105)
T ss_pred EEcchhcHHHHhcCCCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCC---CCcCE
Confidence 46677777775544 446666655 5567777888889999998875 3 9999999999 8999999999 67899
Q ss_pred EEEEeCC-CCeeEEEEEEeehhhhhHh
Q 017971 331 MVVWDGN-ENYLTVSINVLKTRVCFFM 356 (363)
Q Consensus 331 ~vi~~~~-~~y~~~~~~~~~~~~~~~~ 356 (363)
+++++.+ .+.....+....+.+..|+
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 79 LKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEeCCCCCccccCCccCHHHHHhhC
Confidence 9999987 4667777888888877764
No 155
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.00 E-value=2.7e-05 Score=63.39 Aligned_cols=86 Identities=27% Similarity=0.442 Sum_probs=75.5
Q ss_pred CCeEEcC-hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971 43 GKVIELD-ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (363)
Q Consensus 43 ~~v~~l~-~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 121 (363)
+...++. +.+|-+...+.+-+++.||.|.-..|+-....++.+|+..-+ ..|.+||....|-++.+++|+-.|++
T Consensus 66 G~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~PFlv~kL~IkVLP~v 141 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKAPFLVTKLNIKVLPTV 141 (211)
T ss_pred ceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccCceeeeeeeeeEeeeE
Confidence 4455554 788888888889999999999999999999999999976433 89999999999999999999999999
Q ss_pred EEEeCCEEEee
Q 017971 122 KIFMHGIPTEY 132 (363)
Q Consensus 122 ~~~~~g~~~~y 132 (363)
.+|++|....|
T Consensus 142 ~l~k~g~~~D~ 152 (211)
T KOG1672|consen 142 ALFKNGKTVDY 152 (211)
T ss_pred EEEEcCEEEEE
Confidence 99999987764
No 156
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.00 E-value=6.5e-05 Score=57.35 Aligned_cols=104 Identities=15% Similarity=0.057 Sum_probs=82.1
Q ss_pred eEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc--CCEEE
Q 017971 45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA--FPTLK 122 (363)
Q Consensus 45 v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~Pt~~ 122 (363)
|.++|.+|++.+...+-+..+.|+++. .-..+.+.+.++|+.+....+++.|+.+|.++.....+.+|+++ .|.+.
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~~--~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDKD--DLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIA 78 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecch--HHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEE
Confidence 467889999988888777777777333 34788999999999933333459999999999888999999987 89999
Q ss_pred EEeCCE--EEe-ecCCCCHHHHHHHHHhhcC
Q 017971 123 IFMHGI--PTE-YYGPRKAELLVRYLKKFVA 150 (363)
Q Consensus 123 ~~~~g~--~~~-y~g~~~~~~i~~~i~~~~~ 150 (363)
+...+. .+. +.+..+.+.|.+|+.+...
T Consensus 79 i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 79 IDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 987543 444 5688999999999998764
No 157
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.99 E-value=7.7e-05 Score=61.96 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=59.7
Q ss_pred CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhh
Q 017971 59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL 109 (363)
Q Consensus 59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l 109 (363)
++++++|.|| +.||++|....+.+.++.+++.+.+ +.+..|.++. ...+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 105 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKI 105 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhH
Confidence 4589999999 7999999999999999999887543 5555454432 2345
Q ss_pred hhhCCcC------cCCEEEEEe-CCEEE-eecC----CCCHHHHHHHHHhh
Q 017971 110 ASKQEID------AFPTLKIFM-HGIPT-EYYG----PRKAELLVRYLKKF 148 (363)
Q Consensus 110 ~~~~~i~------~~Pt~~~~~-~g~~~-~y~g----~~~~~~i~~~i~~~ 148 (363)
.+.|++. ..|+.+++. +|+.. .+.+ .+..+++.+.++..
T Consensus 106 ~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 106 SRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 5667775 467888886 45433 2322 34566777777553
No 158
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.97 E-value=0.00012 Score=61.34 Aligned_cols=63 Identities=22% Similarity=0.171 Sum_probs=43.3
Q ss_pred CccccccCCCCCeEEcChhhHHHhHcCCCeE-EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971 33 SEEETKFKIDGKVIELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (363)
Q Consensus 33 ~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~-lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~ 104 (363)
.|+....+.++..+.|+ +| .++++ ++.+||+||+.|++..|.+.++.+++++. ++.+..|+|+
T Consensus 20 ~p~f~l~d~~G~~vsLs--~~-----~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~--gv~vv~vs~~ 83 (183)
T PTZ00256 20 FFEFEAIDIDGQLVQLS--KF-----KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ--GLEILAFPCN 83 (183)
T ss_pred ccceEeEcCCCCEEeHH--Hh-----CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC--CcEEEEEecc
Confidence 34444444455444443 22 45654 55669999999999999999999998754 3888888763
No 159
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.97 E-value=8e-05 Score=65.05 Aligned_cols=87 Identities=20% Similarity=0.192 Sum_probs=66.5
Q ss_pred CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---------chhhhhhCCcCcCCEEEEEeCC--E
Q 017971 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------YSRLASKQEIDAFPTLKIFMHG--I 128 (363)
Q Consensus 60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---------~~~l~~~~~i~~~Pt~~~~~~g--~ 128 (363)
.+..|+.||.+.|++|+++.|.+..+++.+ +-.+....+|..- +...++++|+..+|++++...+ +
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK 226 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence 469999999999999999999999999876 2224444455432 2458899999999999999754 3
Q ss_pred EEe-ecCCCCHHHHHHHHHhhc
Q 017971 129 PTE-YYGPRKAELLVRYLKKFV 149 (363)
Q Consensus 129 ~~~-y~g~~~~~~i~~~i~~~~ 149 (363)
... -.|..+.++|.+-+...+
T Consensus 227 ~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 227 MSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEEeeccCCHHHHHHHHHHHH
Confidence 333 479999999988776554
No 160
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.97 E-value=3.6e-05 Score=67.06 Aligned_cols=129 Identities=19% Similarity=0.242 Sum_probs=94.7
Q ss_pred HHHHHHHHhcCCcccEEEeecCCh--------hHHHHHHHHhhhhhH------HHHhhhcchhhhhhcCCCCCCeEEEEc
Q 017971 160 AEVSDFVENAGTFFPLFIGFGLDE--------SVMSNLALKYKKKAW------FAVAKDFSEDTMVLYDFDKVPALVALQ 225 (363)
Q Consensus 160 ~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~p~iv~~~ 225 (363)
.+++..+..++ .++|.|+.++ +.+.+.|..++...- -.+..+...+++.+|.++++|++.+|+
T Consensus 4 ~N~~~il~s~e---lvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 4 ENIDSILDSNE---LVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccHHHhhccce---EEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 34677777755 6888888765 457777776665321 122245668889999999999999999
Q ss_pred CCCCCcccccCCCCHHHHHHHHHhhcCCCcccCCh-hhHHhhhcCCCcEEEEEEeCCChhhHHHHHH
Q 017971 226 PSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQ-DTLNLLKDDKRKIVLAIVEDETEEKSQKLVT 291 (363)
Q Consensus 226 ~~~~~~~~~~g~~~~~~l~~fi~~~~~p~~~~lt~-~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 291 (363)
.+.-....|.|..+.+.|.+||++...-.+.++.. +.+..+....+..+|..|.+.+..+++.+++
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~k 147 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRK 147 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHH
Confidence 86666678999999999999999997666766654 4555666666788888888767776654443
No 161
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.96 E-value=6.2e-05 Score=54.45 Aligned_cols=94 Identities=21% Similarity=0.287 Sum_probs=74.9
Q ss_pred hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCcC----cCC-EEE
Q 017971 50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEID----AFP-TLK 122 (363)
Q Consensus 50 ~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~----~~P-t~~ 122 (363)
-++|.+++.-...++|.|..+--. -......+.++|+.+++. -.++.|||.+ .+.||+++.+. .-| .+.
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks~k~-a~~~Lk~~~~~A~~vkG~---gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~Lk 84 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKSAKS-AEALLKLLSDVAQAVKGQ---GTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELK 84 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecchhh-HHHHHHHHHHHHHHhcCc---eeEEEEecCChHHHHHHHHHccCCCCCCCcchhh
Confidence 478999998878888887766544 345556889999988876 6688899987 78999999988 334 477
Q ss_pred EEeCCEEE-eecCCCCHHHHHHHHHh
Q 017971 123 IFMHGIPT-EYYGPRKAELLVRYLKK 147 (363)
Q Consensus 123 ~~~~g~~~-~y~g~~~~~~i~~~i~~ 147 (363)
.|++|... +|+-..+..+|++|++.
T Consensus 85 HYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 85 HYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cccCCCccccccchhhHHHHHHHhhC
Confidence 78999876 59999999999999874
No 162
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.93 E-value=9.1e-05 Score=55.48 Aligned_cols=97 Identities=10% Similarity=0.136 Sum_probs=73.1
Q ss_pred cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC----CcEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971 255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR----ELVFCYVGIKQFADFADTFEANKKSKLPK 330 (363)
Q Consensus 255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~----~~~f~~vd~~~~~~~~~~~gi~~~~~~P~ 330 (363)
+.++|.++++....++ ++++.|+ ..-....+.+...+.+++++++ ++.|+.+|++..+.+++.+++ ...|+
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt 76 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV---RGYPT 76 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC---CcCCE
Confidence 3467888888766554 4555555 4466677788888888888764 389999999988899999998 67999
Q ss_pred EEEEeCCCCeeEEEEEEeehhhhhHh
Q 017971 331 MVVWDGNENYLTVSINVLKTRVCFFM 356 (363)
Q Consensus 331 ~vi~~~~~~y~~~~~~~~~~~~~~~~ 356 (363)
+++++.++.-....|....+.+..|+
T Consensus 77 ~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 77 LLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 99996555556677777777766664
No 163
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=97.92 E-value=0.00015 Score=53.09 Aligned_cols=92 Identities=15% Similarity=0.259 Sum_probs=69.9
Q ss_pred CCcccCChhhHHhhhcCC-CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC---cEEEEEeccCchh----HHhhcCCCC
Q 017971 253 PLSVPINQDTLNLLKDDK-RKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFAD----FADTFEANK 324 (363)
Q Consensus 253 p~~~~lt~~~~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~----~~~~~gi~~ 324 (363)
|.+++++.+++..+-... ....|+.|....+....++.++++++|+++++ +.|+|||.++++- +-+.|||+
T Consensus 1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~ID- 79 (120)
T cd03074 1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGID- 79 (120)
T ss_pred CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcc-
Confidence 556788887777654433 45666667777888888999999999998876 9999999999855 55678883
Q ss_pred CCCCCeEEEEeCC---CCeeEEEEE
Q 017971 325 KSKLPKMVVWDGN---ENYLTVSIN 346 (363)
Q Consensus 325 ~~~~P~~vi~~~~---~~y~~~~~~ 346 (363)
-..|.+.+.+.+ +-++.++.+
T Consensus 80 -l~~PqIGVV~vtdadSvW~~m~~~ 103 (120)
T cd03074 80 -LFRPQIGVVNVTDADSVWMEMDDD 103 (120)
T ss_pred -cCCCceeeEecccccceeEecccc
Confidence 346999999986 456666554
No 164
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.91 E-value=0.00015 Score=54.30 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=74.4
Q ss_pred cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971 255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (363)
Q Consensus 255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v 332 (363)
+.+++.++++.+..+ +.++.|+ ..-....+.+...+.+++...++ +.|+.+|+.+++.+++.+++ ...|+++
T Consensus 3 v~~l~~~~f~~~~~~--~~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i---~~~Pt~~ 76 (101)
T cd02994 3 VVELTDSNWTLVLEG--EWMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFV---TALPTIY 76 (101)
T ss_pred eEEcChhhHHHHhCC--CEEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCC---cccCEEE
Confidence 457888888887643 2444444 44667778888889999887653 89999999999999999999 7899999
Q ss_pred EEeCCCCeeEEEEEEeehhhhhHhh
Q 017971 333 VWDGNENYLTVSINVLKTRVCFFML 357 (363)
Q Consensus 333 i~~~~~~y~~~~~~~~~~~~~~~~~ 357 (363)
++ ++|+.....+....+.+..|+.
T Consensus 77 ~~-~~g~~~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 77 HA-KDGVFRRYQGPRDKEDLISFIE 100 (101)
T ss_pred Ee-CCCCEEEecCCCCHHHHHHHHh
Confidence 87 5566667778888888887764
No 165
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.89 E-value=3.8e-05 Score=55.33 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=43.4
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch-----hhhhhCCcCcCCEEEEEeCCEE
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-----RLASKQEIDAFPTLKIFMHGIP 129 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~g~~ 129 (363)
++.|+++||++|++..+.+.+.. .. ..+.+..+|-+++. .+.+..++.++|+++ .+|..
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~---~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK---PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC---CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEE
Confidence 47899999999999999998865 22 23667777765443 266667999999984 46654
No 166
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.88 E-value=0.00018 Score=58.53 Aligned_cols=99 Identities=17% Similarity=0.169 Sum_probs=60.9
Q ss_pred CCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECC-CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-----
Q 017971 31 LSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAP-WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----- 104 (363)
Q Consensus 31 ~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~-~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----- 104 (363)
...|+....+.++..+.+.+ + ++++++|.||+. ||+.|....+.+.++.+.+++.+ +.+..|..+
T Consensus 8 ~~~p~f~l~~~~G~~~~l~~--~-----~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d~~~~~ 78 (154)
T PRK09437 8 DIAPKFSLPDQDGEQVSLTD--F-----QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTDKPEKL 78 (154)
T ss_pred CcCCCcEeeCCCCCEEeHHH--h-----CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCHHHH
Confidence 34444444444454444322 2 457999999976 68889999999999988886543 555555432
Q ss_pred ----------------cchhhhhhCCcCcC------------CEEEEEe-CCEEEe-ecCCCCH
Q 017971 105 ----------------KYSRLASKQEIDAF------------PTLKIFM-HGIPTE-YYGPRKA 138 (363)
Q Consensus 105 ----------------~~~~l~~~~~i~~~------------Pt~~~~~-~g~~~~-y~g~~~~ 138 (363)
....+.+.|++... |+.+++. +|+... |.|....
T Consensus 79 ~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~ 142 (154)
T PRK09437 79 SRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS 142 (154)
T ss_pred HHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcc
Confidence 33456667776543 5556664 565443 6664433
No 167
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.88 E-value=0.00021 Score=54.91 Aligned_cols=90 Identities=14% Similarity=0.172 Sum_probs=65.8
Q ss_pred HcCCCeEEEEEECC----CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCcCcCCEEEEEe--CCE
Q 017971 57 ISSFDYILVDFYAP----WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFPTLKIFM--HGI 128 (363)
Q Consensus 57 l~~~~~~lv~fy~~----~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~--~g~ 128 (363)
-++.++.+|++|++ ||..|+..... .++.+-+++ ++.+...|.+. ...++..+++.++|++.++. +++
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~---~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~ 89 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT---RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNR 89 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc---CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCc
Confidence 36779999999999 88999765422 123333333 37777788754 46789999999999999983 332
Q ss_pred --EE-eecCCCCHHHHHHHHHhhcC
Q 017971 129 --PT-EYYGPRKAELLVRYLKKFVA 150 (363)
Q Consensus 129 --~~-~y~g~~~~~~i~~~i~~~~~ 150 (363)
.+ +..|..++++++..++....
T Consensus 90 ~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 90 MTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred eEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 23 48999999999998877643
No 168
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.85 E-value=0.00017 Score=58.02 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=35.3
Q ss_pred CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh
Q 017971 61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR 108 (363)
Q Consensus 61 ~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~ 108 (363)
..+++.|++.||+.|+...|.+.++.+++.+. .+.+..|+.+....
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~--~v~vv~V~~~~~~~ 70 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDAL--GVELVAVGPESPEK 70 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhc--CeEEEEEeCCCHHH
Confidence 34455456999999999999999999988644 38888888765543
No 169
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.85 E-value=0.00027 Score=58.33 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=33.7
Q ss_pred CCCeEEEEEECCC-ChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971 59 SFDYILVDFYAPW-CGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (363)
Q Consensus 59 ~~~~~lv~fy~~~-C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~ 104 (363)
.+++++|.||+.| |+.|....|.+.++++.+. ++.+..|.++
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D 85 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISAD 85 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCC
Confidence 4679999999999 9999999999999988763 2555555543
No 170
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.85 E-value=9.8e-05 Score=57.87 Aligned_cols=86 Identities=22% Similarity=0.366 Sum_probs=51.9
Q ss_pred cChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhC---CcCcCCEEEE
Q 017971 48 LDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ---EIDAFPTLKI 123 (363)
Q Consensus 48 l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~Pt~~~ 123 (363)
++++..+.+. ...+..++-|..+||+.|+..-|.+.++++... .+.+--+--++++++-.+| |...+|++++
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~ 103 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENKELMDQYLTNGGRSIPTFIF 103 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEE
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCChhHHHHHHhCCCeecCEEEE
Confidence 3444444333 233567888999999999999999999998642 3666666666777776654 6789999999
Q ss_pred Ee-CCEEEeecCCCC
Q 017971 124 FM-HGIPTEYYGPRK 137 (363)
Q Consensus 124 ~~-~g~~~~y~g~~~ 137 (363)
+. +|+.+..-|++.
T Consensus 104 ~d~~~~~lg~wgerP 118 (129)
T PF14595_consen 104 LDKDGKELGRWGERP 118 (129)
T ss_dssp E-TT--EEEEEESS-
T ss_pred EcCCCCEeEEEcCCC
Confidence 95 467666666664
No 171
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.82 E-value=0.00056 Score=53.77 Aligned_cols=108 Identities=15% Similarity=0.200 Sum_probs=80.1
Q ss_pred CeEEcChhhHHH-hHcCCCeEEEEEECC--CChh-h-hhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC--
Q 017971 44 KVIELDESNFDS-AISSFDYILVDFYAP--WCGH-C-KRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID-- 116 (363)
Q Consensus 44 ~v~~l~~~~f~~-~l~~~~~~lv~fy~~--~C~~-C-~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~-- 116 (363)
.+++|++++.-. .=.+++..+|.|-.. .|.. + ......+.++|+.+++. .+.|+.+|.++...+.+.||+.
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk--~i~Fv~vd~~~~~~~~~~fgl~~~ 80 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKK--PWGWLWTEAGAQLDLEEALNIGGF 80 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCC--cEEEEEEeCcccHHHHHHcCCCcc
Confidence 578888776643 334445556666432 1221 2 46788899999988653 3999999999999999999995
Q ss_pred cCCEEEEEeCCE-EEe-ecCCCCHHHHHHHHHhhcCCCc
Q 017971 117 AFPTLKIFMHGI-PTE-YYGPRKAELLVRYLKKFVAPDV 153 (363)
Q Consensus 117 ~~Pt~~~~~~g~-~~~-y~g~~~~~~i~~~i~~~~~~~v 153 (363)
++|+++++...+ .+. +.|..+.+.|.+|+.+.+...+
T Consensus 81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 599999997654 444 6799999999999999987554
No 172
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.82 E-value=0.00015 Score=54.44 Aligned_cols=97 Identities=9% Similarity=0.161 Sum_probs=73.1
Q ss_pred cccCChhhHHhhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC---cEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971 255 SVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLPK 330 (363)
Q Consensus 255 ~~~lt~~~~~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~~~~~~gi~~~~~~P~ 330 (363)
+.+++..+++... ..++++++.|+ .......+.+...+.++++.+++ +.|+.+|++.+ ..+..+++ ...|+
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~---~~~Pt 76 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVV---DGFPT 76 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccC---CCCCE
Confidence 4577888888754 44466666665 44677778889999999988765 89999999875 46777777 68899
Q ss_pred EEEEeCCC--CeeEEEEEEeehhhhhHh
Q 017971 331 MVVWDGNE--NYLTVSINVLKTRVCFFM 356 (363)
Q Consensus 331 ~vi~~~~~--~y~~~~~~~~~~~~~~~~ 356 (363)
++++..++ +.....++...+.+..|+
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 77 ILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 99998876 566677777777776664
No 173
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.80 E-value=0.00016 Score=54.26 Aligned_cols=97 Identities=8% Similarity=0.151 Sum_probs=72.8
Q ss_pred cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC--C-cEEEEEeccC--chhHHhhcCCCCCCCCC
Q 017971 255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQ--FADFADTFEANKKSKLP 329 (363)
Q Consensus 255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~-~~f~~vd~~~--~~~~~~~~gi~~~~~~P 329 (363)
+.+++..+++.....+++.++.|+.+ .....+++...+.++++.+. + +.|+.+|+.. ++.+++.+|+ ...|
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i---~~~P 77 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAP-WCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV---KGFP 77 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECC-CCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC---cccc
Confidence 34677778887777777777777644 56677778888888887765 3 8899999987 8899999999 6789
Q ss_pred eEEEEeCCCCeeEEEEEEeehhhhhH
Q 017971 330 KMVVWDGNENYLTVSINVLKTRVCFF 355 (363)
Q Consensus 330 ~~vi~~~~~~y~~~~~~~~~~~~~~~ 355 (363)
++++++.+..-....+....+.+..|
T Consensus 78 t~~~~~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 78 TFKYFENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred EEEEEeCCCeeEEeCCCCCHHHHHhh
Confidence 99999865545666666666665554
No 174
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.80 E-value=0.00016 Score=55.38 Aligned_cols=75 Identities=17% Similarity=0.373 Sum_probs=48.5
Q ss_pred hhHHHhH----cCCCeEEEEEECC-------CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-------hhhhh-
Q 017971 51 SNFDSAI----SSFDYILVDFYAP-------WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------SRLAS- 111 (363)
Q Consensus 51 ~~f~~~l----~~~~~~lv~fy~~-------~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------~~l~~- 111 (363)
++|.+++ +++++.+|.|+++ ||+.|....|.++++-....+ +..+..+..... ..+-+
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE---HHHHC-TTSHHHH-
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCCHHHhCCCCCCceEc
Confidence 3455555 3457999999975 999999999999998876433 377776766432 23433
Q ss_pred -hCCcCcCCEEEEEeCCE
Q 017971 112 -KQEIDAFPTLKIFMHGI 128 (363)
Q Consensus 112 -~~~i~~~Pt~~~~~~g~ 128 (363)
+++++++||++-+..++
T Consensus 83 p~~~l~~IPTLi~~~~~~ 100 (119)
T PF06110_consen 83 PDLKLKGIPTLIRWETGE 100 (119)
T ss_dssp -CC---SSSEEEECTSS-
T ss_pred ceeeeeecceEEEECCCC
Confidence 58999999999887763
No 175
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.80 E-value=0.00017 Score=55.11 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=73.6
Q ss_pred CChhhHHh-hh--cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971 258 INQDTLNL-LK--DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (363)
Q Consensus 258 lt~~~~~~-l~--~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v 332 (363)
++..++.. +. ..++++++.|+.+ .....+.+...+.++++++++ +.++.+|++..+.+++.+|+ ...|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~vlV~F~a~-wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V---~~~Pt~~ 84 (111)
T cd02963 9 LTFSQYENEIVPKSFKKPYLIKITSD-WCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGA---HSVPAIV 84 (111)
T ss_pred eeHHHHHHhhccccCCCeEEEEEECC-ccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCC---ccCCEEE
Confidence 34455543 32 2456777777644 667777888888889888764 89999999988899999999 7899999
Q ss_pred EEeCCCCeeEEEEEEeehhhhhHhhhh
Q 017971 333 VWDGNENYLTVSINVLKTRVCFFMLTL 359 (363)
Q Consensus 333 i~~~~~~y~~~~~~~~~~~~~~~~~~~ 359 (363)
+++.+.......+....+.++.|+..+
T Consensus 85 i~~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 85 GIINGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred EEECCEEEEEecCCCCHHHHHHHHhcC
Confidence 998554555667888888888887653
No 176
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.79 E-value=0.00021 Score=51.76 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=54.5
Q ss_pred EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch----hhhhhCC--cCcCCEEEEEeCCEEEeecCCC
Q 017971 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS----RLASKQE--IDAFPTLKIFMHGIPTEYYGPR 136 (363)
Q Consensus 63 ~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~----~l~~~~~--i~~~Pt~~~~~~g~~~~y~g~~ 136 (363)
-++.|+.+||++|++..+.++++..... ++.+..+|.++++ ++.+..+ +..+|+++ .+|+.+.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~----~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig----- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD----DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG----- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc----CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc-----
Confidence 4678999999999999999999886532 3778888887653 4544444 57899986 4665432
Q ss_pred CHHHHHHHHHhhc
Q 017971 137 KAELLVRYLKKFV 149 (363)
Q Consensus 137 ~~~~i~~~i~~~~ 149 (363)
.-+++.++.+.++
T Consensus 71 g~~~~~~~~~~~~ 83 (85)
T PRK11200 71 GCTDFEAYVKENL 83 (85)
T ss_pred CHHHHHHHHHHhc
Confidence 2466777776654
No 177
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.79 E-value=0.0002 Score=62.19 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=66.4
Q ss_pred CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc---------hhhhhhCCcCcCCEEEEEeCC--E
Q 017971 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY---------SRLASKQEIDAFPTLKIFMHG--I 128 (363)
Q Consensus 60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~---------~~l~~~~~i~~~Pt~~~~~~g--~ 128 (363)
++..|+.||.+.|++|+++.|.+..+++.+. -.|....+|..-. ...++++||..+|++++...+ +
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg---~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG---LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS 219 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence 4689999999999999999999999998762 2355556665322 336678999999999999754 3
Q ss_pred EEe-ecCCCCHHHHHHHHHhhc
Q 017971 129 PTE-YYGPRKAELLVRYLKKFV 149 (363)
Q Consensus 129 ~~~-y~g~~~~~~i~~~i~~~~ 149 (363)
... -.|..+.++|.+-+....
T Consensus 220 ~~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 220 VRPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEEEeeccCCHHHHHHHHHHHH
Confidence 333 479999999987776543
No 178
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.78 E-value=0.00016 Score=54.12 Aligned_cols=83 Identities=6% Similarity=0.036 Sum_probs=68.3
Q ss_pred CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEecc-CchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEE
Q 017971 269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIK-QFADFADTFEANKKSKLPKMVVWDGNENYLTVSINV 347 (363)
Q Consensus 269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~-~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~ 347 (363)
.++++++.|+ ..-....+.+...+.++++.++++.|+.+|.. +++.+++.+++ ..+|++++++++ ......|..
T Consensus 17 ~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V---~~~PT~~lf~~g-~~~~~~G~~ 91 (100)
T cd02999 17 REDYTAVLFY-ASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGV---VGFPTILLFNST-PRVRYNGTR 91 (100)
T ss_pred CCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCC---eecCEEEEEcCC-ceeEecCCC
Confidence 4566666666 34567778889999999999988889999998 78899999999 679999999877 777788888
Q ss_pred eehhhhhHh
Q 017971 348 LKTRVCFFM 356 (363)
Q Consensus 348 ~~~~~~~~~ 356 (363)
..+.+.+|+
T Consensus 92 ~~~~l~~f~ 100 (100)
T cd02999 92 TLDSLAAFY 100 (100)
T ss_pred CHHHHHhhC
Confidence 888888774
No 179
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.78 E-value=0.00014 Score=55.56 Aligned_cols=94 Identities=15% Similarity=0.216 Sum_probs=67.8
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEeecC--C-hh---HHHHHHHHhhhhh-HHHHh---h-----hcchhhhhhcCCC-
Q 017971 153 VSILNSDAEVSDFVENAGTFFPLFIGFGL--D-ES---VMSNLALKYKKKA-WFAVA---K-----DFSEDTMVLYDFD- 216 (363)
Q Consensus 153 v~~i~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~---~~~~~a~~~~~~~-~~~~~---~-----~~~~~~~~~~~~~- 216 (363)
+..|++ .++++++.+++ .++|-|+. . .. .++.+|.++.... .+.++ . ..+.+++++|+++
T Consensus 3 ~v~L~~-~nF~~~v~~~~---~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~ 78 (116)
T cd03007 3 CVDLDT-VTFYKVIPKFK---YSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDK 78 (116)
T ss_pred eeECCh-hhHHHHHhcCC---cEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCc
Confidence 455655 56999998887 36666665 2 23 6888888775421 11121 1 2347799999999
Q ss_pred -CCCeEEEEcCC-CCCcccccCC-CCHHHHHHHHHhh
Q 017971 217 -KVPALVALQPS-YNEHNIFYGP-FDEEFLEEFIKQN 250 (363)
Q Consensus 217 -~~p~iv~~~~~-~~~~~~~~g~-~~~~~l~~fi~~~ 250 (363)
++|++.+|+.+ ...+..|.|. .+.++|.+||+++
T Consensus 79 ~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 79 ESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 99999999975 2356789996 9999999999886
No 180
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.78 E-value=0.0002 Score=61.65 Aligned_cols=103 Identities=13% Similarity=0.165 Sum_probs=81.3
Q ss_pred CcccCChhhHHhhhcC-----CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCC
Q 017971 254 LSVPINQDTLNLLKDD-----KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSK 327 (363)
Q Consensus 254 ~~~~lt~~~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~ 327 (363)
.+.++|..+++.+... ++++++.|+. .-....+.+...+.++|+++++ +.|+.+|+++++.+++.+++ .+
T Consensus 31 ~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyA-pWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I---~~ 106 (224)
T PTZ00443 31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYA-PWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAI---KG 106 (224)
T ss_pred CcEECCHHHHHHHHhhhcccCCCCEEEEEEC-CCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCC---Cc
Confidence 4678888888875432 3567766664 4667778888999999999988 89999999999999999999 68
Q ss_pred CCeEEEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971 328 LPKMVVWDGNENYLTVSINVLKTRVCFFMLTLL 360 (363)
Q Consensus 328 ~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~ 360 (363)
.|++++++....+....+....+.+..|+..-+
T Consensus 107 ~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 107 YPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred CCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence 999999995444555567788889999987654
No 181
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.77 E-value=0.00021 Score=55.65 Aligned_cols=105 Identities=11% Similarity=0.108 Sum_probs=79.8
Q ss_pred CcccCChhhHHhhhcCCCcEEEEEEeC-CChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971 254 LSVPINQDTLNLLKDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPK 330 (363)
Q Consensus 254 ~~~~lt~~~~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~ 330 (363)
.++.++..++......+...++++-.+ ....+..+..=+|.++++++.+ +.|+.||.++++.+...||+ ...|+
T Consensus 18 g~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV---~siPT 94 (132)
T PRK11509 18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGV---FRFPA 94 (132)
T ss_pred CCCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCC---ccCCE
Confidence 344455577777666655554444322 3334455667788899999883 89999999999999999999 68999
Q ss_pred EEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971 331 MVVWDGNENYLTVSINVLKTRVCFFMLTLLQ 361 (363)
Q Consensus 331 ~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 361 (363)
+++++..+.-....|-..++.+.+++..+|.
T Consensus 95 Ll~FkdGk~v~~i~G~~~k~~l~~~I~~~L~ 125 (132)
T PRK11509 95 TLVFTGGNYRGVLNGIHPWAELINLMRGLVE 125 (132)
T ss_pred EEEEECCEEEEEEeCcCCHHHHHHHHHHHhc
Confidence 9999999877788888888888888887764
No 182
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=97.76 E-value=8.5e-05 Score=56.28 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=68.7
Q ss_pred CceecCChHHHHHHHHhc-CCcccEEEeecCCh-----hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEc
Q 017971 152 DVSILNSDAEVSDFVENA-GTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQ 225 (363)
Q Consensus 152 ~v~~i~~~~~~~~~~~~~-~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~ 225 (363)
++.++++.++++.++... + +.+|||+.+. ..+.++|..+++.+.|++ +.+..+...+++.. |.+++|+
T Consensus 1 ~v~~i~s~~ele~f~~~~~~---~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~--t~~~~~~~~~~~~~-~~vvl~r 74 (107)
T cd03068 1 PSKQLQTLKQVQEFLRDGDD---VIIIGVFSGEEDPAYQLYQDAANSLREDYKFHH--TFDSEIFKSLKVSP-GQLVVFQ 74 (107)
T ss_pred CceEcCCHHHHHHHHhcCCC---EEEEEEECCCCCHHHHHHHHHHHhcccCCEEEE--EChHHHHHhcCCCC-CceEEEC
Confidence 357788889999998776 4 5788887442 358889999988887765 34567777888764 7788886
Q ss_pred C------CCCCcccccCC-CCHHH-HHHHHHhh
Q 017971 226 P------SYNEHNIFYGP-FDEEF-LEEFIKQN 250 (363)
Q Consensus 226 ~------~~~~~~~~~g~-~~~~~-l~~fi~~~ 250 (363)
+ -.+....|.|. .+.++ |..||+.|
T Consensus 75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred cHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 5 24456678877 66656 99999865
No 183
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.73 E-value=0.00029 Score=53.65 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=72.3
Q ss_pred EcChhhHHHhHcCCCeEEEEEE----CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc----C
Q 017971 47 ELDESNFDSAISSFDYILVDFY----APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA----F 118 (363)
Q Consensus 47 ~l~~~~f~~~l~~~~~~lv~fy----~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~----~ 118 (363)
.+|.+|..... . .+.++.|| +..-..-..+.+.+.++|+.+++ +++.|+.+|.++.....+.||+.. .
T Consensus 3 ~~~~en~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~--gki~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 3 HRTKDNRAQFT-K-KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPD--RKLNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred eeccchHHHhc-c-CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcC--CeEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 56777777774 2 33344433 33445567899999999999872 239999999998888889999974 9
Q ss_pred CEEEEEeCCE-EEeecCCC-CHHHHHHHHHhh
Q 017971 119 PTLKIFMHGI-PTEYYGPR-KAELLVRYLKKF 148 (363)
Q Consensus 119 Pt~~~~~~g~-~~~y~g~~-~~~~i~~~i~~~ 148 (363)
|.+.+...+. .+...+.. +.+.|.+|+.+.
T Consensus 79 P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 9999987433 33346777 999999999875
No 184
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.73 E-value=0.00037 Score=53.42 Aligned_cols=88 Identities=9% Similarity=0.110 Sum_probs=66.7
Q ss_pred CcccCCh-hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971 254 LSVPINQ-DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (363)
Q Consensus 254 ~~~~lt~-~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v 332 (363)
.+.+++. ..+.....+++++++.|+.+ .....+.+...+.+++++++++.|..+|.+.++.+.+.+++ ...|+++
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~-~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v---~~vPt~l 80 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHP-EFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNI---KVLPTVI 80 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECC-CCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCC---ccCCEEE
Confidence 3444444 55665555566777777644 56677788899999999998999999999999999999999 6899999
Q ss_pred EEeCCCCeeEEEE
Q 017971 333 VWDGNENYLTVSI 345 (363)
Q Consensus 333 i~~~~~~y~~~~~ 345 (363)
+++.........+
T Consensus 81 ~fk~G~~v~~~~g 93 (113)
T cd02989 81 LFKNGKTVDRIVG 93 (113)
T ss_pred EEECCEEEEEEEC
Confidence 9987644444333
No 185
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.71 E-value=0.00028 Score=53.72 Aligned_cols=84 Identities=13% Similarity=0.178 Sum_probs=67.5
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEe
Q 017971 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVL 348 (363)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~ 348 (363)
++++++-|. ..-....+.+...+.++|.++++ +.|+.||.++++.+...+|+ ...|++++++....-....+..-
T Consensus 14 ~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V---~~iPTf~~fk~G~~v~~~~G~~~ 89 (114)
T cd02954 14 EKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYEL---YDPPTVMFFFRNKHMKIDLGTGN 89 (114)
T ss_pred CCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCC---CCCCEEEEEECCEEEEEEcCCCC
Confidence 445555554 45677778889999999999998 79999999999999999999 67999999998766666667777
Q ss_pred ehhhhhHhh
Q 017971 349 KTRVCFFML 357 (363)
Q Consensus 349 ~~~~~~~~~ 357 (363)
++.+.++..
T Consensus 90 ~~~~~~~~~ 98 (114)
T cd02954 90 NNKINWVFE 98 (114)
T ss_pred CceEEEecC
Confidence 777666544
No 186
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.70 E-value=0.00019 Score=57.46 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=45.5
Q ss_pred CCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCC-ChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc
Q 017971 31 LSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPW-CGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105 (363)
Q Consensus 31 ~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~-C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~ 105 (363)
..+|+....+.++..+.|.+ + .+++++|.||+.| |++|+...|.+.++.++++ ++.+..|+.+.
T Consensus 4 ~~aP~f~l~~~~g~~~~l~~--~-----~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~ 68 (143)
T cd03014 4 DKAPDFTLVTSDLSEVSLAD--F-----AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADL 68 (143)
T ss_pred CCCCCcEEECCCCcEEeHHH--h-----CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCC
Confidence 34455444445555444432 2 4579999999998 6999999999999988763 37788887754
No 187
>PTZ00051 thioredoxin; Provisional
Probab=97.70 E-value=0.00049 Score=51.11 Aligned_cols=82 Identities=11% Similarity=0.201 Sum_probs=63.0
Q ss_pred hhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCC
Q 017971 260 QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNEN 339 (363)
Q Consensus 260 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~ 339 (363)
.+.+..+...++++++.|+ .......+.+...+.+++++++++.|+.+|.+++..+++.|++ ...|++++++..+.
T Consensus 8 ~~~~~~~~~~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 8 QAEFESTLSQNELVIVDFY-AEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENI---TSMPTFKVFKNGSV 83 (98)
T ss_pred HHHHHHHHhcCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCC---ceeeEEEEEeCCeE
Confidence 4566666666666666666 4467777888899999999988899999999998999999999 68999999965444
Q ss_pred eeEEEE
Q 017971 340 YLTVSI 345 (363)
Q Consensus 340 y~~~~~ 345 (363)
.....|
T Consensus 84 ~~~~~G 89 (98)
T PTZ00051 84 VDTLLG 89 (98)
T ss_pred EEEEeC
Confidence 434443
No 188
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.69 E-value=0.00043 Score=51.21 Aligned_cols=83 Identities=13% Similarity=0.182 Sum_probs=64.2
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEe
Q 017971 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVL 348 (363)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~ 348 (363)
++++++.|+. ......+.+...+.+++..+++ +.|+.+|++..+.+++.|++ ...|++++++.........+...
T Consensus 12 ~~~vlv~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i---~~~Pt~~~~~~g~~~~~~~g~~~ 87 (96)
T cd02956 12 QVPVVVDFWA-PRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGV---QALPTVYLFAAGQPVDGFQGAQP 87 (96)
T ss_pred CCeEEEEEEC-CCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCC---CCCCEEEEEeCCEEeeeecCCCC
Confidence 4567766664 4677778888999999999887 89999999999999999999 67999999984333345566666
Q ss_pred ehhhhhHh
Q 017971 349 KTRVCFFM 356 (363)
Q Consensus 349 ~~~~~~~~ 356 (363)
.+++..++
T Consensus 88 ~~~l~~~l 95 (96)
T cd02956 88 EEQLRQML 95 (96)
T ss_pred HHHHHHHh
Confidence 66666654
No 189
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.68 E-value=0.00022 Score=57.60 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=56.5
Q ss_pred EEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHH-HHH--HHHHHhhcCCCCeEEEEEeCccchhhhhhC--------C
Q 017971 46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAP-QLD--EAAPILAKLKEPIVIAKVDADKYSRLASKQ--------E 114 (363)
Q Consensus 46 ~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~-~~~--~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~ 114 (363)
...+++.++.+-++++++||.++.+||+.|+.... .|. ++++.++.. +.-.+||-++.+++-+.| |
T Consensus 23 ~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~---FI~VkvDree~Pdid~~y~~~~~~~~~ 99 (163)
T PF03190_consen 23 QPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN---FIPVKVDREERPDIDKIYMNAVQAMSG 99 (163)
T ss_dssp B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----EEEEEETTT-HHHHHHHHHHHHHHHS
T ss_pred ccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC---EEEEEeccccCccHHHHHHHHHHHhcC
Confidence 34567889999999999999999999999998775 343 356666554 888899999999998888 7
Q ss_pred cCcCCEEEEEeC-CEEE
Q 017971 115 IDAFPTLKIFMH-GIPT 130 (363)
Q Consensus 115 i~~~Pt~~~~~~-g~~~ 130 (363)
..|+|+.++... |+++
T Consensus 100 ~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 100 SGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp ---SSEEEEE-TTS-EE
T ss_pred CCCCCceEEECCCCCee
Confidence 889999998864 5655
No 190
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.67 E-value=0.00029 Score=69.70 Aligned_cols=93 Identities=13% Similarity=0.225 Sum_probs=72.5
Q ss_pred EEcChhhHHHhHcCCCeEEE-EEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEE
Q 017971 46 IELDESNFDSAISSFDYILV-DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF 124 (363)
Q Consensus 46 ~~l~~~~f~~~l~~~~~~lv-~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 124 (363)
..|+++..+++-.=+++.-| .|.+++|++|......+.+++... +++..-.+|.++.++++++|+|.++|++++
T Consensus 461 ~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~----~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i- 535 (555)
T TIGR03143 461 QPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN----PNVEAEMIDVSHFPDLKDEYGIMSVPAIVV- 535 (555)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC----CCceEEEEECcccHHHHHhCCceecCEEEE-
Confidence 34556655555433455544 468999999998888888887653 358999999999999999999999999987
Q ss_pred eCCEEEeecCCCCHHHHHHHH
Q 017971 125 MHGIPTEYYGPRKAELLVRYL 145 (363)
Q Consensus 125 ~~g~~~~y~g~~~~~~i~~~i 145 (363)
+|+ ..+.|..+.+++++|+
T Consensus 536 -~~~-~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 536 -DDQ-QVYFGKKTIEEMLELI 554 (555)
T ss_pred -CCE-EEEeeCCCHHHHHHhh
Confidence 555 4477988999999886
No 191
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.64 E-value=0.00044 Score=55.72 Aligned_cols=41 Identities=7% Similarity=0.234 Sum_probs=33.0
Q ss_pred CeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 017971 61 DYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103 (363)
Q Consensus 61 ~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~ 103 (363)
++++|.|| ++||+.|.+..|.+.++.+.+.+.+ +.+..|..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~ 70 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISV 70 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecC
Confidence 77888887 8999999999999999999886543 66665554
No 192
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.63 E-value=0.0012 Score=59.01 Aligned_cols=189 Identities=13% Similarity=0.115 Sum_probs=113.5
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEeecCC---hh----------HHHHHHHHhhhhh--HHHHh-hhcchhhhhhcCC
Q 017971 152 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD---ES----------VMSNLALKYKKKA--WFAVA-KDFSEDTMVLYDF 215 (363)
Q Consensus 152 ~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~---~~----------~~~~~a~~~~~~~--~~~~~-~~~~~~~~~~~~~ 215 (363)
.|..|+. .++.+++.+.+ ..++.|+.. .. ...+++.+..... -|+.+ ...+..+++++|+
T Consensus 35 RVi~Lne-KNfk~~lKkyd---~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv 110 (383)
T PF01216_consen 35 RVIDLNE-KNFKRALKKYD---VLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV 110 (383)
T ss_dssp -CEEE-T-TTHHHHHHH-S---EEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred ceEEcch-hHHHHHHHhhc---EEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence 4777755 67999999887 455655522 11 1233444443322 22222 3456778999999
Q ss_pred CCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhcCCCcccCChh-hHHhhhc-CCCcEEEEEEeCCChhhHHHHHHHH
Q 017971 216 DKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQD-TLNLLKD-DKRKIVLAIVEDETEEKSQKLVTTL 293 (363)
Q Consensus 216 ~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p~~~~lt~~-~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~~~l 293 (363)
...+++.+|+. ++...|.|.++++.|..||..--...+..++.. ....... ...+.+|.+|.+..++. .+.+
T Consensus 111 ~E~~SiyVfkd--~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~----yk~F 184 (383)
T PF01216_consen 111 EEEGSIYVFKD--GEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEH----YKEF 184 (383)
T ss_dssp -STTEEEEEET--TEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHH----HHHH
T ss_pred cccCcEEEEEC--CcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHH----HHHH
Confidence 99999999987 788999999999999999999877667666653 2222222 22578889887766654 4456
Q ss_pred HHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC--CCeeEEEEEEeehhhhhHhh
Q 017971 294 KAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN--ENYLTVSINVLKTRVCFFML 357 (363)
Q Consensus 294 ~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~--~~y~~~~~~~~~~~~~~~~~ 357 (363)
.++|..+.. +.|.-+- .+.+++.+|+ . +--+-.+.|- .-...|..-.+-++++.|+.
T Consensus 185 eeAAe~F~p~IkFfAtf---d~~vAk~L~l-K---~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~ 244 (383)
T PF01216_consen 185 EEAAEHFQPYIKFFATF---DKKVAKKLGL-K---LNEVDFYEPFMDEPITIPGKPYTEEELVEFIE 244 (383)
T ss_dssp HHHHHHCTTTSEEEEE----SHHHHHHHT--S---TT-EEEE-TTSSSEEEESSSS--HHHHHHHHH
T ss_pred HHHHHhhcCceeEEEEe---cchhhhhcCc-c---ccceeeeccccCCCccCCCCCCCHHHHHHHHH
Confidence 678898876 8875432 2468999998 2 5667777775 33455555567778888875
No 193
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.63 E-value=0.00094 Score=55.99 Aligned_cols=99 Identities=21% Similarity=0.221 Sum_probs=66.8
Q ss_pred CCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC------------------
Q 017971 43 GKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA------------------ 103 (363)
Q Consensus 43 ~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~------------------ 103 (363)
+....++-++| .++++++.|| +.||+.|....+.+.+..+++.+.+ +.+..|..
T Consensus 19 g~~~~v~L~d~-----~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~~~~~a~~~~~~~~~~ 91 (187)
T PRK10382 19 GEFIEVTEKDT-----EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTHFTHKAWHSSSETIAK 91 (187)
T ss_pred CcceEEEHHHh-----CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCHHHHHHHHHhhccccC
Confidence 44555555544 4568999999 9999999999999999998886443 33333332
Q ss_pred -------ccchhhhhhCCc----CcC--CEEEEEe-CCEEEe---e--cCCCCHHHHHHHHHhh
Q 017971 104 -------DKYSRLASKQEI----DAF--PTLKIFM-HGIPTE---Y--YGPRKAELLVRYLKKF 148 (363)
Q Consensus 104 -------~~~~~l~~~~~i----~~~--Pt~~~~~-~g~~~~---y--~g~~~~~~i~~~i~~~ 148 (363)
+.+..+++.|++ .+. |+.++.. +|+... + ...++.+++.+.+...
T Consensus 92 l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 92 IKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 234578888998 355 8888886 454321 2 2346777777776443
No 194
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.63 E-value=7.8e-05 Score=63.35 Aligned_cols=83 Identities=20% Similarity=0.237 Sum_probs=56.3
Q ss_pred CCeEEEEEECCCChhhhhHHHHHHHHHHHh--------------------------------h----cCCC--CeEEEEE
Q 017971 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPIL--------------------------------A----KLKE--PIVIAKV 101 (363)
Q Consensus 60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~--------------------------------~----~~~~--~v~~~~v 101 (363)
.+..++.|+.+.|++|+++.+.+.+....+ + +... .......
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~~ 156 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCDN 156 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccCc
Confidence 478999999999999999999887511100 0 0000 0111222
Q ss_pred eCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHH
Q 017971 102 DADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145 (363)
Q Consensus 102 d~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i 145 (363)
+..++..+++++||+++|+++ +.+|.. ..|..+.+.|.+|+
T Consensus 157 ~i~~~~~l~~~~gi~gtPtii-~~~G~~--~~G~~~~~~l~~~L 197 (197)
T cd03020 157 PVAANLALGRQLGVNGTPTIV-LADGRV--VPGAPPAAQLEALL 197 (197)
T ss_pred hHHHHHHHHHHcCCCcccEEE-ECCCeE--ecCCCCHHHHHhhC
Confidence 334556789999999999997 777865 46888888887764
No 195
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.62 E-value=0.00062 Score=49.33 Aligned_cols=89 Identities=12% Similarity=0.194 Sum_probs=65.6
Q ss_pred HhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEE
Q 017971 264 NLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTV 343 (363)
Q Consensus 264 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~ 343 (363)
......+++.++.|. .........+.+.+++++...+++.|+++|....+.+++.+++ ...|++++++.++.....
T Consensus 4 ~~~~~~~~~~ll~~~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v---~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 4 EELIKSAKPVVVDFW-APWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGV---RSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred HHHHhcCCcEEEEEE-CCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCc---ccccEEEEEECCEEEEEE
Confidence 333333456666655 4466777888889999888866699999999988899999999 678999999877655555
Q ss_pred EEEEeehhhhhHh
Q 017971 344 SINVLKTRVCFFM 356 (363)
Q Consensus 344 ~~~~~~~~~~~~~ 356 (363)
.+......+..++
T Consensus 80 ~g~~~~~~l~~~i 92 (93)
T cd02947 80 VGADPKEELEEFL 92 (93)
T ss_pred ecCCCHHHHHHHh
Confidence 5555556666654
No 196
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.61 E-value=0.00075 Score=51.73 Aligned_cols=87 Identities=7% Similarity=0.049 Sum_probs=68.6
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCee--EEEEEEeehh
Q 017971 274 VLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYL--TVSINVLKTR 351 (363)
Q Consensus 274 ~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~--~~~~~~~~~~ 351 (363)
+++++........+.+.+.+.+++..++.+.|..+|.+.++.+...+|+ ...|++++++.+++.. ...|-...++
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v---~~vPt~~i~~~g~~~~~~~~~G~~~~~e 101 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGV---ERVPTTIFLQDGGKDGGIRYYGLPAGYE 101 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCC---CcCCEEEEEeCCeecceEEEEecCchHH
Confidence 3344444455667788889988888876699999999999999999999 6789999998754322 5778888899
Q ss_pred hhhHhhhhhcCC
Q 017971 352 VCFFMLTLLQFS 363 (363)
Q Consensus 352 ~~~~~~~~~~~~ 363 (363)
+..|+..++.-|
T Consensus 102 l~~~i~~i~~~~ 113 (113)
T cd02975 102 FASLIEDIVRVS 113 (113)
T ss_pred HHHHHHHHHhcC
Confidence 999999888654
No 197
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00041 Score=60.88 Aligned_cols=105 Identities=10% Similarity=0.146 Sum_probs=85.1
Q ss_pred CCcccCChhhHHh--hhcCC-CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCC
Q 017971 253 PLSVPINQDTLNL--LKDDK-RKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKL 328 (363)
Q Consensus 253 p~~~~lt~~~~~~--l~~~~-~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~ 328 (363)
|.+.++|..|++. +..+. .|+++.|... -.....++...|.+++..++| +.++.||++..+.+...||+ ...
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap-~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgi---qsI 98 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAP-WCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGV---QSI 98 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCC-CCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCc---CcC
Confidence 4478888888886 44444 4888888755 677778999999999999999 99999999999999999999 789
Q ss_pred CeEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971 329 PKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ 361 (363)
Q Consensus 329 P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 361 (363)
|+++.+.-..----+.|-.-.+-|++|+.+++.
T Consensus 99 PtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 99 PTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred CeEEEeeCCcCccccCCCCcHHHHHHHHHHhcC
Confidence 999988876555556666666778888877764
No 198
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.59 E-value=0.00075 Score=51.70 Aligned_cols=86 Identities=14% Similarity=0.158 Sum_probs=64.7
Q ss_pred CcccCChhhHHhhhcCC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971 254 LSVPINQDTLNLLKDDK---RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPK 330 (363)
Q Consensus 254 ~~~~lt~~~~~~l~~~~---~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~ 330 (363)
.+.+++..++....... .++++.|+. ......+.+...+.++|.+++++.|+.||+++. .+++.+++ ...|+
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a-~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i---~~~Pt 79 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYE-PGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDI---KVLPT 79 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeC-CCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCC---CcCCE
Confidence 45566776676543332 566666654 466677788999999999999999999999987 89999999 68999
Q ss_pred EEEEeCCCCeeEEE
Q 017971 331 MVVWDGNENYLTVS 344 (363)
Q Consensus 331 ~vi~~~~~~y~~~~ 344 (363)
++++..........
T Consensus 80 ~~~f~~G~~v~~~~ 93 (113)
T cd02957 80 LLVYKNGELIDNIV 93 (113)
T ss_pred EEEEECCEEEEEEe
Confidence 99998764444433
No 199
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.58 E-value=0.0011 Score=49.27 Aligned_cols=90 Identities=13% Similarity=0.091 Sum_probs=63.6
Q ss_pred ChhhHHHhHcC--CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhCCcC-cCCEE
Q 017971 49 DESNFDSAISS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEID-AFPTL 121 (363)
Q Consensus 49 ~~~~f~~~l~~--~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~-~~Pt~ 121 (363)
+.+.+++++++ .++++|.=+++.|+-+......|++......+. +.++-+|.-++++ ++.+|||. .-|.+
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 45778888855 789999999999999999999999998765443 8899999988765 57789996 68999
Q ss_pred EEEeCCEEEe--ecCCCCHHHH
Q 017971 122 KIFMHGIPTE--YYGPRKAELL 141 (363)
Q Consensus 122 ~~~~~g~~~~--y~g~~~~~~i 141 (363)
+++++|+.+- -.+..+.+.|
T Consensus 83 ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 83 ILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEECCEEEEECccccCCHHhc
Confidence 9999998763 2344555444
No 200
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.58 E-value=0.00037 Score=46.66 Aligned_cols=55 Identities=27% Similarity=0.404 Sum_probs=41.4
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh----CCcCcCCEEEEEeCCEE
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK----QEIDAFPTLKIFMHGIP 129 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~~~Pt~~~~~~g~~ 129 (363)
++.|+.+||++|++....+++ .+ +.+-.+|.+.+++..+. .+..++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~~--i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------KG--IPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------TT--BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------cC--CeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 477999999999998877743 22 77888898887544333 49999999986 6553
No 201
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.58 E-value=0.00079 Score=57.36 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=60.8
Q ss_pred CCCeEEE-EEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc---------------------------cchhhh
Q 017971 59 SFDYILV-DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---------------------------KYSRLA 110 (363)
Q Consensus 59 ~~~~~lv-~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---------------------------~~~~l~ 110 (363)
+++.++| .|++.||+.|....+.+.+..+++++.+ +.+..|.++ .+.+++
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia 103 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA 103 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH
Confidence 3455544 6899999999999999999988887543 444444332 335677
Q ss_pred hhCCcC------cCCEEEEEeCCEEEe----e--cCCCCHHHHHHHHHhh
Q 017971 111 SKQEID------AFPTLKIFMHGIPTE----Y--YGPRKAELLVRYLKKF 148 (363)
Q Consensus 111 ~~~~i~------~~Pt~~~~~~g~~~~----y--~g~~~~~~i~~~i~~~ 148 (363)
+.||+. ..|+.+++..+..+. | .+.++.+++++.++..
T Consensus 104 ~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 104 REYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred HHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 788874 589999996443332 2 3467888888887654
No 202
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.57 E-value=0.00053 Score=67.30 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=76.0
Q ss_pred EEcChhhHHHhHcCC-CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEE
Q 017971 46 IELDESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF 124 (363)
Q Consensus 46 ~~l~~~~f~~~l~~~-~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 124 (363)
..|+++..+.+-+=+ +.-+-.|+++.|++|......+.+++.. +++|..-.+|..++++++++|++.++|++++
T Consensus 101 ~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~----~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i- 175 (517)
T PRK15317 101 PKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVL----NPNITHTMIDGALFQDEVEARNIMAVPTVFL- 175 (517)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh----CCCceEEEEEchhCHhHHHhcCCcccCEEEE-
Confidence 445555555544323 4558889999999998888888777753 4469999999999999999999999999975
Q ss_pred eCCEEEeecCCCCHHHHHHHHHhhcC
Q 017971 125 MHGIPTEYYGPRKAELLVRYLKKFVA 150 (363)
Q Consensus 125 ~~g~~~~y~g~~~~~~i~~~i~~~~~ 150 (363)
+|+ ..+.|..+.+++.+.+.+..+
T Consensus 176 -~~~-~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 176 -NGE-EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred -CCc-EEEecCCCHHHHHHHHhcccc
Confidence 554 347899999999998876543
No 203
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00063 Score=53.68 Aligned_cols=106 Identities=13% Similarity=0.167 Sum_probs=85.8
Q ss_pred CCCcccCChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCC
Q 017971 252 LPLSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP 329 (363)
Q Consensus 252 ~p~~~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P 329 (363)
.+.+...+.+.++. +.++..|+++-|... -.-..+.+...|.+++.++.+ +.|+.+|.+++.++...|+| ...|
T Consensus 42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~-WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I---~avP 117 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAE-WCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEI---SAVP 117 (150)
T ss_pred cccccccCHHHHHHHHHccCCCEEEEEecC-cCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcce---eeee
Confidence 34556666666665 567778888777643 555567889999999999988 99999999999999999999 6789
Q ss_pred eEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971 330 KMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ 361 (363)
Q Consensus 330 ~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 361 (363)
+++++++..+--..-|-+..+-++.++..+|.
T Consensus 118 tvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 118 TVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 99999999877777888888888888877763
No 204
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.52 E-value=0.0003 Score=48.80 Aligned_cols=67 Identities=22% Similarity=0.294 Sum_probs=44.5
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhC----CcCcCCEEEEEeCCEEEeecCCCCHH
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ----EIDAFPTLKIFMHGIPTEYYGPRKAE 139 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~----~i~~~Pt~~~~~~g~~~~y~g~~~~~ 139 (363)
++.|+++||++|++..+.+.+. ++.+..+|.+.++...+.+ ++.++|++.+ +|. ...| .+..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~---------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~--~i~g-~~~~ 67 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER---------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE--HLSG-FRPD 67 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC---------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE--EEec-CCHH
Confidence 5779999999999987776652 2666777877665544433 6889999976 443 2223 4455
Q ss_pred HHHHH
Q 017971 140 LLVRY 144 (363)
Q Consensus 140 ~i~~~ 144 (363)
.|.++
T Consensus 68 ~l~~~ 72 (73)
T cd02976 68 KLRAL 72 (73)
T ss_pred HHHhh
Confidence 55554
No 205
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.52 E-value=0.00069 Score=53.91 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=35.5
Q ss_pred CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971 59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (363)
Q Consensus 59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~ 104 (363)
.+++++|.|| +.||+.|....|.+.++.+.++.. .+.+..|..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 5689999999 789999999999999999988543 3666666554
No 206
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.49 E-value=0.0015 Score=48.48 Aligned_cols=87 Identities=15% Similarity=0.163 Sum_probs=65.2
Q ss_pred hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEE
Q 017971 266 LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVS 344 (363)
Q Consensus 266 l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~ 344 (363)
+...++++++.|. .......+...+.+.++++++.+ +.+..+|.++.+.+.+.+++ ...|++++++.++......
T Consensus 9 ~~~~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v---~~vPt~~i~~~g~~v~~~~ 84 (97)
T cd02949 9 YHESDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGI---MGTPTVQFFKDKELVKEIS 84 (97)
T ss_pred HHhCCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCC---eeccEEEEEECCeEEEEEe
Confidence 4455555665555 45777778888899999988876 99999999988999999999 6899999998654555566
Q ss_pred EEEeehhhhhHh
Q 017971 345 INVLKTRVCFFM 356 (363)
Q Consensus 345 ~~~~~~~~~~~~ 356 (363)
+...++.+..|+
T Consensus 85 g~~~~~~~~~~l 96 (97)
T cd02949 85 GVKMKSEYREFI 96 (97)
T ss_pred CCccHHHHHHhh
Confidence 655555555543
No 207
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.48 E-value=0.0019 Score=48.44 Aligned_cols=93 Identities=14% Similarity=0.124 Sum_probs=68.5
Q ss_pred ChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeC
Q 017971 259 NQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (363)
Q Consensus 259 t~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~ 336 (363)
|.+++..+..+++++++.|+. .-....+.+...+.+++..+++ +.|+.+|.+ .+..++.+++ ...|++++++.
T Consensus 6 ~~~~~~~~i~~~~~vvv~F~a-~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v---~~~Pt~~~~~~ 80 (102)
T cd02948 6 NQEEWEELLSNKGLTVVDVYQ-EWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRG---KCEPTFLFYKN 80 (102)
T ss_pred CHHHHHHHHccCCeEEEEEEC-CcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCC---CcCcEEEEEEC
Confidence 456777766677777777664 4667777888889999988874 789999998 6788999999 67899999985
Q ss_pred CCCeeEEEEEEeehhhhhHhh
Q 017971 337 NENYLTVSINVLKTRVCFFML 357 (363)
Q Consensus 337 ~~~y~~~~~~~~~~~~~~~~~ 357 (363)
........+ ...+.+..++.
T Consensus 81 g~~~~~~~G-~~~~~~~~~i~ 100 (102)
T cd02948 81 GELVAVIRG-ANAPLLNKTIT 100 (102)
T ss_pred CEEEEEEec-CChHHHHHHHh
Confidence 544555555 35555655554
No 208
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.0013 Score=49.77 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=67.6
Q ss_pred hhhHHHhH--cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971 50 ESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (363)
Q Consensus 50 ~~~f~~~l--~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 127 (363)
....++++ ...+.++|.|-..|.+.|.+....+.++++.+.+. ..++-+|.++-+++.+-|++...|++++|-++
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV~~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence 35566666 45578999999999999999999999999998765 78888999999999999999999999999877
Q ss_pred EEE
Q 017971 128 IPT 130 (363)
Q Consensus 128 ~~~ 130 (363)
+.+
T Consensus 88 kHm 90 (142)
T KOG3414|consen 88 KHM 90 (142)
T ss_pred ceE
Confidence 644
No 209
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.00093 Score=50.10 Aligned_cols=73 Identities=23% Similarity=0.423 Sum_probs=54.6
Q ss_pred hhHHHhH---cCCCeEEEEEECC--------CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-------hhhhhh
Q 017971 51 SNFDSAI---SSFDYILVDFYAP--------WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------SRLASK 112 (363)
Q Consensus 51 ~~f~~~l---~~~~~~lv~fy~~--------~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------~~l~~~ 112 (363)
+.|++.+ .+++.++|+|+++ ||+.|.+..|.+.++-+... .++.|..|+..+- ..+-..
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap---~~~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP---EDVHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC---CceEEEEEEecCCCcccCCCCccccC
Confidence 5566665 3456699999984 99999999999999887543 3599999998643 344555
Q ss_pred CCc-CcCCEEEEEeC
Q 017971 113 QEI-DAFPTLKIFMH 126 (363)
Q Consensus 113 ~~i-~~~Pt~~~~~~ 126 (363)
.++ .++||+.=+.+
T Consensus 90 ~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 90 PGILTAVPTLLRWKR 104 (128)
T ss_pred CCceeecceeeEEcC
Confidence 666 88999887653
No 210
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=97.42 E-value=0.0012 Score=48.35 Aligned_cols=99 Identities=16% Similarity=0.246 Sum_probs=67.6
Q ss_pred cCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----C----CC--cEEEEEecc-CchhHHhhc-CCCC
Q 017971 257 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASA----N----RE--LVFCYVGIK-QFADFADTF-EANK 324 (363)
Q Consensus 257 ~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~----~----~~--~~f~~vd~~-~~~~~~~~~-gi~~ 324 (363)
.+|+.+...+.. .|++++|.+.++.-..+.....++.+|++ + .+ +.|.+ +++ +-...++.| ++
T Consensus 3 ~Lse~~a~~Ln~--~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~-a~ede~tdsLRDf~nL-- 77 (116)
T cd03071 3 ELSESNAVQLNE--GPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFV-AGEDDMTDSLRDYTNL-- 77 (116)
T ss_pred cccHHHHHhhcC--CceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeee-eccchHHHHHHHhcCC--
Confidence 455556655544 58888888665554577777888877754 1 12 44443 333 334555554 77
Q ss_pred CCCCCeEEEEeCC--CCeeEEEEEEeehhhhhHhhhhh
Q 017971 325 KSKLPKMVVWDGN--ENYLTVSINVLKTRVCFFMLTLL 360 (363)
Q Consensus 325 ~~~~P~~vi~~~~--~~y~~~~~~~~~~~~~~~~~~~~ 360 (363)
+..-|.++|++.. ++|-.+..+++++-+.+|+..+|
T Consensus 78 ~d~~P~LviLDip~r~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 78 PEAAPLLTILDMSARAKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred CccCceEEEEeccccceEeCchHhcCHHHHHHHHHHhh
Confidence 4677999999975 56777788899999999999887
No 211
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.42 E-value=0.0015 Score=49.70 Aligned_cols=97 Identities=9% Similarity=0.145 Sum_probs=68.7
Q ss_pred cccCChhhHHhhh---cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccC-chhHHh-hcCCCCCCC
Q 017971 255 SVPINQDTLNLLK---DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQ-FADFAD-TFEANKKSK 327 (363)
Q Consensus 255 ~~~lt~~~~~~l~---~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~-~~~~~~-~~gi~~~~~ 327 (363)
+.+++.++++.+. ..++++++.|+ .......+++...+.+++..+++ +.++.+|++. ...++. .+++ ..
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v---~~ 78 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL---KS 78 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC---Cc
Confidence 5678888888765 34567777666 44677778888889999988765 8999999986 466775 4888 67
Q ss_pred CCeEEEEeCCC-CeeEEEEE-EeehhhhhH
Q 017971 328 LPKMVVWDGNE-NYLTVSIN-VLKTRVCFF 355 (363)
Q Consensus 328 ~P~~vi~~~~~-~y~~~~~~-~~~~~~~~~ 355 (363)
.|++++++.++ +-+..+++ ...+-+..|
T Consensus 79 ~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f 108 (109)
T cd02993 79 FPTILFFPKNSRQPIKYPSEQRDVDSLLMF 108 (109)
T ss_pred CCEEEEEcCCCCCceeccCCCCCHHHHHhh
Confidence 99999998874 33344442 344444444
No 212
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.39 E-value=0.00059 Score=56.91 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=36.5
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~ 104 (363)
.+++++|.|||+||+.|+ ..|.++++.+++.+. .+.+..+.|.
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~--gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQ--GFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhC--CeEEEEeecc
Confidence 468999999999999996 488999999988654 3888889885
No 213
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.37 E-value=0.00058 Score=54.49 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=37.5
Q ss_pred CCCeEEEEEECCCChh-hhhHHHHHHHHHHHhhcCC-CCeEEEEEeCc
Q 017971 59 SFDYILVDFYAPWCGH-CKRLAPQLDEAAPILAKLK-EPIVIAKVDAD 104 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~-C~~~~~~~~~~a~~~~~~~-~~v~~~~vd~~ 104 (363)
++++++|.||++||+. |....+.+.++.+.+.+.+ .++.+..|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5689999999999997 9999999999999886543 34777766653
No 214
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.34 E-value=0.0012 Score=49.38 Aligned_cols=92 Identities=17% Similarity=0.116 Sum_probs=63.3
Q ss_pred CCCeEEcChhhHHHhHcCCCeEEEEEECCC--ChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971 42 DGKVIELDESNFDSAISSFDYILVDFYAPW--CGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP 119 (363)
Q Consensus 42 ~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~--C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 119 (363)
......++.++++.++..++..++.|..+. |+.|....=.+-++.+.+.+ .+..+.++-..+..+..+||+..+|
T Consensus 8 ~~g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~---~~~~avv~~~~e~~L~~r~gv~~~P 84 (107)
T PF07449_consen 8 RHGWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPG---RFRGAVVARAAERALAARFGVRRWP 84 (107)
T ss_dssp T-TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT---SEEEEEEEHHHHHHHHHHHT-TSSS
T ss_pred hcCCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC---ccceEEECchhHHHHHHHhCCccCC
Confidence 456788899999999988777665554432 34444433344445444444 4788888877889999999999999
Q ss_pred EEEEEeCCEEEe-ecCCC
Q 017971 120 TLKIFMHGIPTE-YYGPR 136 (363)
Q Consensus 120 t~~~~~~g~~~~-y~g~~ 136 (363)
++.++++|+... -.|.+
T Consensus 85 aLvf~R~g~~lG~i~gi~ 102 (107)
T PF07449_consen 85 ALVFFRDGRYLGAIEGIR 102 (107)
T ss_dssp EEEEEETTEEEEEEESSS
T ss_pred eEEEEECCEEEEEecCee
Confidence 999999998775 34543
No 215
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.33 E-value=0.0025 Score=51.00 Aligned_cols=96 Identities=9% Similarity=0.102 Sum_probs=72.7
Q ss_pred hHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccC--chhHHhhcCCCCCCCCCeEEEEeCCC
Q 017971 262 TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWDGNE 338 (363)
Q Consensus 262 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~--~~~~~~~~gi~~~~~~P~~vi~~~~~ 338 (363)
.++.....++++++.|+. .-....+.+...+.++++.+.+ +.|+.+|.+. +..+++.|++ ...|++++++++|
T Consensus 12 ~~~~a~~~gk~vvV~F~A-~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V---~~iPt~v~~~~~G 87 (142)
T cd02950 12 PPEVALSNGKPTLVEFYA-DWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV---DGIPHFVFLDREG 87 (142)
T ss_pred CHHHHHhCCCEEEEEEEC-CcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC---CCCCEEEEECCCC
Confidence 344445566777777764 4677778888999999998876 7788877664 4578899999 6799999998876
Q ss_pred C-eeEEEEEEeehhhhhHhhhhhc
Q 017971 339 N-YLTVSINVLKTRVCFFMLTLLQ 361 (363)
Q Consensus 339 ~-y~~~~~~~~~~~~~~~~~~~~~ 361 (363)
+ .....|....+.++..+..+++
T Consensus 88 ~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 88 NEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHc
Confidence 4 5566677777888888888775
No 216
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.33 E-value=0.0032 Score=47.39 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=67.8
Q ss_pred ChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC--
Q 017971 49 DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH-- 126 (363)
Q Consensus 49 ~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~-- 126 (363)
+.+++++++...+.++|-|+..--. .....|.++|+.+... +.|+... +..+.+.+++ -|++.+|++
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d---~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~ 75 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRES---FRFAHTS---DKQLLEKYGY--GEGVVLFRPPR 75 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhc---CEEEEEC---hHHHHHhcCC--CCceEEEechh
Confidence 4566888888888888888876544 5678899999887543 7887665 4567788888 788999943
Q ss_pred ------CEEEeecCCCCHHHHHHHHHhh
Q 017971 127 ------GIPTEYYGPRKAELLVRYLKKF 148 (363)
Q Consensus 127 ------g~~~~y~g~~~~~~i~~~i~~~ 148 (363)
.....|.|..+.+.|.+|+...
T Consensus 76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 76 LSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhcccCcccccccCcCCHHHHHHHHHhh
Confidence 2345699998999999999764
No 217
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.31 E-value=0.0015 Score=49.08 Aligned_cols=93 Identities=10% Similarity=0.125 Sum_probs=69.2
Q ss_pred hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC----CcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeC
Q 017971 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR----ELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (363)
Q Consensus 261 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~----~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~ 336 (363)
++++.+. .++++++.|+ .......+.+...+.+++.+++ ++.++.+|+..++.+++.+++ ...|+++++++
T Consensus 7 ~~~~~~~-~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I---~~~Pt~~l~~~ 81 (104)
T cd03000 7 DSFKDVR-KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGV---RGYPTIKLLKG 81 (104)
T ss_pred hhhhhhc-cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCC---ccccEEEEEcC
Confidence 4455543 3455655555 4467777777888888888763 288999999988999999999 67999999975
Q ss_pred CCCeeEEEEEEeehhhhhHhhhh
Q 017971 337 NENYLTVSINVLKTRVCFFMLTL 359 (363)
Q Consensus 337 ~~~y~~~~~~~~~~~~~~~~~~~ 359 (363)
+ ......+....+.+..|+.++
T Consensus 82 ~-~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 82 D-LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred C-CceeecCCCCHHHHHHHHHhh
Confidence 4 445567777888888888764
No 218
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.30 E-value=0.004 Score=54.83 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=59.8
Q ss_pred CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----------------------------cchhh
Q 017971 59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----------------------------KYSRL 109 (363)
Q Consensus 59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----------------------------~~~~l 109 (363)
+++++++.|| +.||+.|....+.+.+..+++++.+ +.+..|.++ .+..+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i 174 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV 174 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence 3467777777 7999999999999999998887554 333333332 23467
Q ss_pred hhhCCcC-----cCCEEEEEe-CCEEEe---e--cCCCCHHHHHHHHHh
Q 017971 110 ASKQEID-----AFPTLKIFM-HGIPTE---Y--YGPRKAELLVRYLKK 147 (363)
Q Consensus 110 ~~~~~i~-----~~Pt~~~~~-~g~~~~---y--~g~~~~~~i~~~i~~ 147 (363)
++.||+. ..|+.++.. +|+... | ...++.+++.+-+..
T Consensus 175 akayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred HHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 8888985 479999986 565332 2 234677777776643
No 219
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.29 E-value=0.0018 Score=46.88 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=50.6
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch----hhhhhCCc--CcCCEEEEEeCCEEEeecCCCC
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS----RLASKQEI--DAFPTLKIFMHGIPTEYYGPRK 137 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i--~~~Pt~~~~~~g~~~~y~g~~~ 137 (363)
++.|+.+||++|++....++++.... ..+.+-.+|.+.+. ++.+..+- .++|++++ +|+.+ | .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~----~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i---g--G 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER----ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV---G--G 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc----CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe---c--C
Confidence 56799999999999998888765322 23677778876432 45555553 78999954 55432 2 2
Q ss_pred HHHHHHHHHhhc
Q 017971 138 AELLVRYLKKFV 149 (363)
Q Consensus 138 ~~~i~~~i~~~~ 149 (363)
.++|.++..++.
T Consensus 71 ~~dl~~~~~~~~ 82 (86)
T TIGR02183 71 CTDFEQLVKENF 82 (86)
T ss_pred HHHHHHHHHhcc
Confidence 467777776654
No 220
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.29 E-value=0.0051 Score=53.78 Aligned_cols=161 Identities=12% Similarity=0.163 Sum_probs=102.1
Q ss_pred HHHHhcCCcccEEEeecCCh--------hHHHHHHHHhhhh---hHHH-HhhhcchhhhhhcCCCCCCeEEEEcCCCCCc
Q 017971 164 DFVENAGTFFPLFIGFGLDE--------SVMSNLALKYKKK---AWFA-VAKDFSEDTMVLYDFDKVPALVALQPSYNEH 231 (363)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~--------~~~~~~a~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~ 231 (363)
+|....+.. .|++-|+..+ +++.++...+++. ++++ ...+.-+.++..+++.++|+|.+++. +..
T Consensus 36 kFkdnkddd-iW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kg--d~a 112 (468)
T KOG4277|consen 36 KFKDNKDDD-IWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKG--DHA 112 (468)
T ss_pred HhhhcccCC-eEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecC--Cee
Confidence 455444333 7999887543 4576776666652 2221 11234477899999999999999987 788
Q ss_pred ccccCCCCHHHHHHHHHhhcCCCcccCChh--hHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEe
Q 017971 232 NIFYGPFDEEFLEEFIKQNFLPLSVPINQD--TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVG 309 (363)
Q Consensus 232 ~~~~g~~~~~~l~~fi~~~~~p~~~~lt~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd 309 (363)
..|.|..+.++|.+|.....-|.+..++.+ .++.+...++|..++|- ....+ +.+.+-..|... +.+++.-
T Consensus 113 ~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~G-tge~P----L~d~fidAASe~--~~~a~Ff 185 (468)
T KOG4277|consen 113 IDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFG-TGEGP----LFDAFIDAASEK--FSVARFF 185 (468)
T ss_pred eecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEe-CCCCc----HHHHHHHHhhhh--eeeeeee
Confidence 899999999999999999999999988864 45567777777766553 22333 233444444332 3333332
Q ss_pred ccCchhHHhhcCCCCCCCCCeEEEEeCC
Q 017971 310 IKQFADFADTFEANKKSKLPKMVVWDGN 337 (363)
Q Consensus 310 ~~~~~~~~~~~gi~~~~~~P~~vi~~~~ 337 (363)
... ...+-... +....|++.+++-.
T Consensus 186 Sas-eeVaPe~~--~~kempaV~VFKDe 210 (468)
T KOG4277|consen 186 SAS-EEVAPEEN--DAKEMPAVAVFKDE 210 (468)
T ss_pred ccc-cccCCccc--chhhccceEEEccc
Confidence 211 11222221 22567999888765
No 221
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00056 Score=57.40 Aligned_cols=76 Identities=17% Similarity=0.355 Sum_probs=66.0
Q ss_pred HcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEe-ecCC
Q 017971 57 ISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTE-YYGP 135 (363)
Q Consensus 57 l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~-y~g~ 135 (363)
.++.+..++.||++||..|+.....+..+++..+ ++.+.+++.++.++++..+.+...|.+.++..|+.+. ..|.
T Consensus 14 ~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~ 89 (227)
T KOG0911|consen 14 DQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGA 89 (227)
T ss_pred HhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhcc
Confidence 3467889999999999999999999999998873 3999999999999999999999999999998887664 4444
Q ss_pred C
Q 017971 136 R 136 (363)
Q Consensus 136 ~ 136 (363)
.
T Consensus 90 ~ 90 (227)
T KOG0911|consen 90 D 90 (227)
T ss_pred C
Confidence 3
No 222
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.27 E-value=0.0042 Score=45.83 Aligned_cols=73 Identities=14% Similarity=0.315 Sum_probs=55.7
Q ss_pred hhHHhhhcCC--CcEEEEEEeCCChhhHHHHHHHHHHHHHh-CCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC
Q 017971 261 DTLNLLKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASA-NRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 337 (363)
Q Consensus 261 ~~~~~l~~~~--~~~~i~~~~~~~~~~~~~~~~~l~~~a~~-~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~ 337 (363)
+.+....... +++++.|+ .......+.+...+.+++.+ +.++.|..+|....+.+++.+++ ...|++++++.+
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i---~~~Pt~~~~~~g 78 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFW-APWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI---TAVPTFVFFRNG 78 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC---ccccEEEEEECC
Confidence 4445443333 56666665 45677778888899999988 44599999999998999999999 679999999754
No 223
>PRK15000 peroxidase; Provisional
Probab=97.26 E-value=0.0026 Score=54.08 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=60.8
Q ss_pred CCCeEEEEEECC-CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----------------------------cchhh
Q 017971 59 SFDYILVDFYAP-WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----------------------------KYSRL 109 (363)
Q Consensus 59 ~~~~~lv~fy~~-~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----------------------------~~~~l 109 (363)
+++++++.||+. ||+.|....+.+.+..+++++.+ +.+..|.++ .+.++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i 110 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI 110 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence 457999999995 99999999999999999887554 445444443 23356
Q ss_pred hhhCCcC------cCCEEEEEe-CCEEEe-ecC----CCCHHHHHHHHHh
Q 017971 110 ASKQEID------AFPTLKIFM-HGIPTE-YYG----PRKAELLVRYLKK 147 (363)
Q Consensus 110 ~~~~~i~------~~Pt~~~~~-~g~~~~-y~g----~~~~~~i~~~i~~ 147 (363)
++.|++. ..|..+++. +|+... +.| .++.+++.+.++.
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 6678876 688888887 454332 222 4677777777654
No 224
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.26 E-value=0.0063 Score=46.77 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=63.7
Q ss_pred hhhHHHhH--cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971 50 ESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (363)
Q Consensus 50 ~~~f~~~l--~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 127 (363)
.-..+++| ++++.++|.|-.+|-+.|.+....+.++++.++.. ..++.||.++-+++.+.|.+..--|+++|-++
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~Vpdfn~~yel~dP~tvmFF~rn 84 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEVPDFNQMYELYDPCTVMFFFRN 84 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTTHCCHHHTTS-SSEEEEEEETT
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccchhhhcccccCCCeEEEEEecC
Confidence 45567776 66789999999999999999999999999998765 89999999999999999999954457777566
Q ss_pred EEEe
Q 017971 128 IPTE 131 (363)
Q Consensus 128 ~~~~ 131 (363)
+.+.
T Consensus 85 khm~ 88 (133)
T PF02966_consen 85 KHMM 88 (133)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6543
No 225
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.24 E-value=0.0042 Score=50.14 Aligned_cols=89 Identities=13% Similarity=0.247 Sum_probs=64.3
Q ss_pred cccCChhhHHhhh-cC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCC----C
Q 017971 255 SVPINQDTLNLLK-DD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKK----S 326 (363)
Q Consensus 255 ~~~lt~~~~~~l~-~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~----~ 326 (363)
+.+++.+++.... .+ +.++++.|+ .......+.+...+.++++++.+ +.|+.||.++++++++.+++ .. .
T Consensus 30 v~~l~~~~f~~~l~~~~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V-~~~~~v~ 107 (152)
T cd02962 30 IKYFTPKTLEEELERDKRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRV-STSPLSK 107 (152)
T ss_pred cEEcCHHHHHHHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCc-eecCCcC
Confidence 4456666666543 23 234555555 44677788889999999998763 99999999999999999999 22 3
Q ss_pred CCCeEEEEeCCCCeeEEEE
Q 017971 327 KLPKMVVWDGNENYLTVSI 345 (363)
Q Consensus 327 ~~P~~vi~~~~~~y~~~~~ 345 (363)
+.|++++++.........+
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCEEEEEECCEEEEEEec
Confidence 4899999986655555544
No 226
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.19 E-value=0.0031 Score=47.40 Aligned_cols=90 Identities=8% Similarity=0.065 Sum_probs=64.8
Q ss_pred HHhhhcCCCcEEEEEEeCCChhhHHHHHHHH---HHHHHhCC-CcEEEEEeccC----chhHHhhcCCCCCCCCCeEEEE
Q 017971 263 LNLLKDDKRKIVLAIVEDETEEKSQKLVTTL---KAAASANR-ELVFCYVGIKQ----FADFADTFEANKKSKLPKMVVW 334 (363)
Q Consensus 263 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l---~~~a~~~~-~~~f~~vd~~~----~~~~~~~~gi~~~~~~P~~vi~ 334 (363)
+......++++++.|.. ......+.+...+ .+++..++ ++.++.+|..+ .+.+++.+++ ...|+++++
T Consensus 4 ~~~~~~~~k~vlv~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i---~~~Pti~~~ 79 (104)
T cd02953 4 LAQALAQGKPVFVDFTA-DWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGV---FGPPTYLFY 79 (104)
T ss_pred HHHHHHcCCeEEEEEEc-chhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCC---CCCCEEEEE
Confidence 44444566777777664 4566666666555 45666666 49999999875 5678999999 679999999
Q ss_pred eC-CC-CeeEEEEEEeehhhhhHh
Q 017971 335 DG-NE-NYLTVSINVLKTRVCFFM 356 (363)
Q Consensus 335 ~~-~~-~y~~~~~~~~~~~~~~~~ 356 (363)
++ +| ......+....+.+..++
T Consensus 80 ~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 80 GPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCCCcccccccCHHHHHHHh
Confidence 97 55 467777888887777654
No 227
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.17 E-value=0.0034 Score=61.58 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=73.7
Q ss_pred EEcChhhHHHhHc-CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEE
Q 017971 46 IELDESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF 124 (363)
Q Consensus 46 ~~l~~~~f~~~l~-~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 124 (363)
..|+++..+.+-+ +.+.-+-.|+++.|++|......+.+++.. +++|..-.+|....++++.+|++.++|++++
T Consensus 102 ~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~----~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i- 176 (515)
T TIGR03140 102 PKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALL----NPNISHTMIDGALFQDEVEALGIQGVPAVFL- 176 (515)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh----CCCceEEEEEchhCHHHHHhcCCcccCEEEE-
Confidence 4556666555443 234568889999999997777777666643 4568899999999999999999999999976
Q ss_pred eCCEEEeecCCCCHHHHHHHHHhh
Q 017971 125 MHGIPTEYYGPRKAELLVRYLKKF 148 (363)
Q Consensus 125 ~~g~~~~y~g~~~~~~i~~~i~~~ 148 (363)
+|+ ..+.|..+.+++.+.+.+.
T Consensus 177 -~~~-~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 177 -NGE-EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred -CCc-EEEecCCCHHHHHHHHhhc
Confidence 554 3478989988888887655
No 228
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.14 E-value=0.0091 Score=44.81 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=59.3
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCch---hHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEE
Q 017971 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFA---DFADTFEANKKSKLPKMVVWDGNENYLTVSIN 346 (363)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~---~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~ 346 (363)
++++++.|+. .-....+.+...+.+++++++++.|+.+|+++.+ .+++.+++ ...|++++++.........|
T Consensus 15 ~k~vvv~F~a-~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V---~~~Pt~~~~~~G~~v~~~~G- 89 (103)
T cd02985 15 GRLVVLEFAL-KHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI---IEVPHFLFYKDGEKIHEEEG- 89 (103)
T ss_pred CCEEEEEEEC-CCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC---CcCCEEEEEeCCeEEEEEeC-
Confidence 5666666654 4566777888999999999977999999998753 78999999 67999999954434444444
Q ss_pred EeehhhhhHhh
Q 017971 347 VLKTRVCFFML 357 (363)
Q Consensus 347 ~~~~~~~~~~~ 357 (363)
....++++-++
T Consensus 90 ~~~~~l~~~~~ 100 (103)
T cd02985 90 IGPDELIGDVL 100 (103)
T ss_pred CCHHHHHHHHH
Confidence 33445554443
No 229
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.12 E-value=0.0058 Score=52.48 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=60.1
Q ss_pred CCe-EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---------------------------chhhhh
Q 017971 60 FDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------------YSRLAS 111 (363)
Q Consensus 60 ~~~-~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~ 111 (363)
++. +|+.|++.||+.|....+.+.++.+++.+.+ +.+..+.++. +.++++
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~ 105 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSN 105 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHH
Confidence 344 4678999999999999999999999887554 4555454432 345677
Q ss_pred hCCcC-------cCCEEEEEeC-CEEE--e-e--cCCCCHHHHHHHHHhh
Q 017971 112 KQEID-------AFPTLKIFMH-GIPT--E-Y--YGPRKAELLVRYLKKF 148 (363)
Q Consensus 112 ~~~i~-------~~Pt~~~~~~-g~~~--~-y--~g~~~~~~i~~~i~~~ 148 (363)
.||+. ..|+.+++.. |+.. . | ...+..+++.+.+...
T Consensus 106 ~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 106 QLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 78873 5799999864 5432 1 3 2246778888777643
No 230
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.10 E-value=0.0038 Score=50.29 Aligned_cols=30 Identities=37% Similarity=0.656 Sum_probs=26.1
Q ss_pred CCeEEEEEECCCChhhhhHHHHHHHHHHHh
Q 017971 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPIL 89 (363)
Q Consensus 60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~ 89 (363)
.+..++.|+.++|++|+++.|.+.++....
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 468899999999999999999999876543
No 231
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.09 E-value=0.002 Score=45.96 Aligned_cols=57 Identities=23% Similarity=0.380 Sum_probs=41.0
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch-----hhhhhCCcCcCCEEEEEeCCEE
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-----RLASKQEIDAFPTLKIFMHGIP 129 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~g~~ 129 (363)
++.|+++||++|++..+.+.++.. .+.+..+|..++. .+.+..+..++|++ |.+|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 578999999999999999888653 2556666665542 34455688899997 456654
No 232
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.09 E-value=0.004 Score=54.90 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=56.4
Q ss_pred CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe--------------------------------------
Q 017971 61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-------------------------------------- 102 (363)
Q Consensus 61 ~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd-------------------------------------- 102 (363)
+..++.|..+.|++|+++++++....+. + +|.+-.+.
T Consensus 118 k~~I~vFtDp~CpyC~kl~~~l~~~~~~--g---~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~ 192 (251)
T PRK11657 118 PRIVYVFADPNCPYCKQFWQQARPWVDS--G---KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK 192 (251)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHhhc--C---ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence 4678899999999999999987765432 1 12111110
Q ss_pred --------C----ccchhhhhhCCcCcCCEEEEEe-CCEEEeecCCCCHHHHHHHHH
Q 017971 103 --------A----DKYSRLASKQEIDAFPTLKIFM-HGIPTEYYGPRKAELLVRYLK 146 (363)
Q Consensus 103 --------~----~~~~~l~~~~~i~~~Pt~~~~~-~g~~~~y~g~~~~~~i~~~i~ 146 (363)
| .++..+.+++|++++|++++-. +|......|..+++.|.+.+.
T Consensus 193 ~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 193 PPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 1 1133467779999999999875 365556789888998888764
No 233
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.08 E-value=0.011 Score=44.21 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=69.3
Q ss_pred eEEc-ChhhHHHhHc-CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971 45 VIEL-DESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (363)
Q Consensus 45 v~~l-~~~~f~~~l~-~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 122 (363)
+..+ +.++++++++ +++..+|-|+..--+ .....|.++|+.+... +.|+... +.++.+.+++. .|.+.
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d---~~F~~~~---~~~~~~~~~~~-~~~i~ 71 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPY---IKFFATF---DSKVAKKLGLK-MNEVD 71 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcC---CEEEEEC---cHHHHHHcCCC-CCcEE
Confidence 3455 4566899998 788888888876544 5667899999887543 7787655 45667777764 79999
Q ss_pred EEeC-C-EEEee-cCCCCHHHHHHHHHhh
Q 017971 123 IFMH-G-IPTEY-YGPRKAELLVRYLKKF 148 (363)
Q Consensus 123 ~~~~-g-~~~~y-~g~~~~~~i~~~i~~~ 148 (363)
++++ + ....| .|..+.+.|.+||...
T Consensus 72 l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 72 FYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 9975 3 34569 7888999999999754
No 234
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.03 E-value=0.0079 Score=51.68 Aligned_cols=87 Identities=11% Similarity=0.141 Sum_probs=58.5
Q ss_pred CCeEE-EEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc---------------------------cchhhhh
Q 017971 60 FDYIL-VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---------------------------KYSRLAS 111 (363)
Q Consensus 60 ~~~~l-v~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---------------------------~~~~l~~ 111 (363)
++.++ +.|+++||+.|....+.+.+.++++++.+ +.+..+.++ .+.++++
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~ 110 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK 110 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence 45444 47899999999999999999999987654 555555443 2235667
Q ss_pred hCCcC-------cCCEEEEEeC-CEEEe---e--cCCCCHHHHHHHHHhh
Q 017971 112 KQEID-------AFPTLKIFMH-GIPTE---Y--YGPRKAELLVRYLKKF 148 (363)
Q Consensus 112 ~~~i~-------~~Pt~~~~~~-g~~~~---y--~g~~~~~~i~~~i~~~ 148 (363)
.||+. ..|+.+++.. |.... | .-.++.+++.+.++..
T Consensus 111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 77763 3677888864 44321 2 2346788888877654
No 235
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.00 E-value=0.0065 Score=49.51 Aligned_cols=84 Identities=21% Similarity=0.302 Sum_probs=59.0
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc--------------------------------
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------------------------------- 106 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------------------------------- 106 (363)
..++.++.|.+..|++|+++.+.+.++.+.+-+ .+++.+...+.-..
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~-~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYID-PGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccC-CCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 347889999999999999999999988887621 22477776653100
Q ss_pred ------------------------------------hhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHh
Q 017971 107 ------------------------------------SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKK 147 (363)
Q Consensus 107 ------------------------------------~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~ 147 (363)
...+++.+|.++||+++ +|+. +.|..+.++|.+.|++
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~--~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY--VVGPYTIEELKELIDK 162 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE--EETTTSHHHHHHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE--eCCCCCHHHHHHHHcC
Confidence 02344568899999887 7765 4678888888888764
No 236
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=96.97 E-value=0.0071 Score=51.56 Aligned_cols=85 Identities=15% Similarity=0.131 Sum_probs=56.8
Q ss_pred eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---------------------------chhhhhhCC
Q 017971 62 YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------------YSRLASKQE 114 (363)
Q Consensus 62 ~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~~~ 114 (363)
.+|+.|++.||+.|....+.+.++.+++++.+ +.+..|.++. +..+++.||
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 44567999999999999999999999987654 5555555442 245677888
Q ss_pred cC----cC----CEEEEEe-CCEEE-eecC----CCCHHHHHHHHHhh
Q 017971 115 ID----AF----PTLKIFM-HGIPT-EYYG----PRKAELLVRYLKKF 148 (363)
Q Consensus 115 i~----~~----Pt~~~~~-~g~~~-~y~g----~~~~~~i~~~i~~~ 148 (363)
+. +. |+.+++. +|+.. .+.+ .++.+++.+.+...
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 75 23 4567775 45432 1222 45677777776543
No 237
>PRK13189 peroxiredoxin; Provisional
Probab=96.96 E-value=0.0096 Score=51.45 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=57.7
Q ss_pred CC-eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc---------------------------cchhhhh
Q 017971 60 FD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---------------------------KYSRLAS 111 (363)
Q Consensus 60 ~~-~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---------------------------~~~~l~~ 111 (363)
++ .+|+.|++.||+.|....+.+.+.++++++.+ +.+..|.++ .+..+++
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~ 112 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAK 112 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHH
Confidence 45 44557789999999999999999999887554 444444332 2345677
Q ss_pred hCCcC-------cCCEEEEEe-CCEEE--e-e--cCCCCHHHHHHHHHhh
Q 017971 112 KQEID-------AFPTLKIFM-HGIPT--E-Y--YGPRKAELLVRYLKKF 148 (363)
Q Consensus 112 ~~~i~-------~~Pt~~~~~-~g~~~--~-y--~g~~~~~~i~~~i~~~ 148 (363)
.||+. ..|+.+++. +|... . | ...++.+++.+.+...
T Consensus 113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78864 457788886 45432 1 2 2456777777777544
No 238
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.93 E-value=0.0083 Score=45.97 Aligned_cols=80 Identities=10% Similarity=0.084 Sum_probs=59.7
Q ss_pred cccCChhhHHhhhcC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC---C-cEEEEEecc--CchhHHhhcCCCCCCC
Q 017971 255 SVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANR---E-LVFCYVGIK--QFADFADTFEANKKSK 327 (363)
Q Consensus 255 ~~~lt~~~~~~l~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~---~-~~f~~vd~~--~~~~~~~~~gi~~~~~ 327 (363)
+.+++..+++....+ ++++++.|+ .......+.+...+.+++.+++ + +.|+.+|+. ..+.+++.+++ ..
T Consensus 3 v~~l~~~~f~~~i~~~~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i---~~ 78 (114)
T cd02992 3 VIVLDAASFNSALLGSPSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGV---TG 78 (114)
T ss_pred eEECCHHhHHHHHhcCCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCC---CC
Confidence 457788888875444 445666555 4466677788888888888654 3 889999975 35678999999 67
Q ss_pred CCeEEEEeCCC
Q 017971 328 LPKMVVWDGNE 338 (363)
Q Consensus 328 ~P~~vi~~~~~ 338 (363)
.|+++++++++
T Consensus 79 ~Pt~~lf~~~~ 89 (114)
T cd02992 79 YPTLRYFPPFS 89 (114)
T ss_pred CCEEEEECCCC
Confidence 89999998774
No 239
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.91 E-value=0.0037 Score=42.95 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=39.9
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhh----hCCcCcCCEEEEEeCCEEE
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS----KQEIDAFPTLKIFMHGIPT 130 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~----~~~i~~~Pt~~~~~~g~~~ 130 (363)
++.|+++||++|++..+.+.+.. +.+-.+|...+++..+ ..+...+|+++ .+|+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~i 61 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 56789999999999988877542 5677888877665433 34667888774 466543
No 240
>PHA02278 thioredoxin-like protein
Probab=96.89 E-value=0.013 Score=43.88 Aligned_cols=90 Identities=11% Similarity=0.106 Sum_probs=65.8
Q ss_pred hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCc----hhHHhhcCCCCCCCCCeEEEEe
Q 017971 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQF----ADFADTFEANKKSKLPKMVVWD 335 (363)
Q Consensus 261 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~----~~~~~~~gi~~~~~~P~~vi~~ 335 (363)
..+......++++++.|+.+ -....+.+...+.+++.++.+ ..|..+|.+.. +.+.+.+++ ...|++++++
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~-WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I---~~iPT~i~fk 80 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQD-NCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI---MSTPVLIGYK 80 (103)
T ss_pred HHHHHHHhCCCcEEEEEECC-CCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC---ccccEEEEEE
Confidence 44555545667777777644 667778888899998887544 77888888864 578999999 7899999999
Q ss_pred CCCCeeEEEEEEeehhhhh
Q 017971 336 GNENYLTVSINVLKTRVCF 354 (363)
Q Consensus 336 ~~~~y~~~~~~~~~~~~~~ 354 (363)
.........|....+.+..
T Consensus 81 ~G~~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 81 DGQLVKKYEDQVTPMQLQE 99 (103)
T ss_pred CCEEEEEEeCCCCHHHHHh
Confidence 8766666666665555443
No 241
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.89 E-value=0.012 Score=48.79 Aligned_cols=81 Identities=17% Similarity=0.304 Sum_probs=60.1
Q ss_pred CCCcccCCh-hhHHhhhcC-C--CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCC
Q 017971 252 LPLSVPINQ-DTLNLLKDD-K--RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK 327 (363)
Q Consensus 252 ~p~~~~lt~-~~~~~l~~~-~--~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~ 327 (363)
+..+.+++. ..+...... + .++++.|+ .......+.+...|..+|.+|+++.|+.||++.. .+...|++ ..
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v---~~ 135 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIY-EPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDT---DA 135 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEE-CCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCC---CC
Confidence 344555555 555554322 2 35666555 4467777888899999999999999999999976 78888988 67
Q ss_pred CCeEEEEeCC
Q 017971 328 LPKMVVWDGN 337 (363)
Q Consensus 328 ~P~~vi~~~~ 337 (363)
+|++++|...
T Consensus 136 vPTlllyk~G 145 (175)
T cd02987 136 LPALLVYKGG 145 (175)
T ss_pred CCEEEEEECC
Confidence 9999999875
No 242
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.84 E-value=0.0028 Score=45.05 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=42.2
Q ss_pred CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc---hhhhhhCCcCcCCEEEEEeCCEE
Q 017971 61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY---SRLASKQEIDAFPTLKIFMHGIP 129 (363)
Q Consensus 61 ~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~Pt~~~~~~g~~ 129 (363)
+.-++.|+.+||++|++....+++. ++.+-.+|++++ .++.+..+...+|.+++ +|+.
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~---------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~ 67 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK---------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKL 67 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc---------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEE
Confidence 4557789999999999988887632 166667888766 34555568899999964 6653
No 243
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.81 E-value=0.0047 Score=46.01 Aligned_cols=62 Identities=23% Similarity=0.223 Sum_probs=39.6
Q ss_pred hHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh-------hhhhCCcCcCCEEEEEeCCE
Q 017971 56 AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR-------LASKQEIDAFPTLKIFMHGI 128 (363)
Q Consensus 56 ~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~-------l~~~~~i~~~Pt~~~~~~g~ 128 (363)
.+++++ ++.|..+||++|++....+.+. + +.+..+|.+++++ +.+.-|...+|++ |.+|+
T Consensus 4 ~i~~~~--Vvvysk~~Cp~C~~ak~~L~~~-------~--i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~ 70 (99)
T TIGR02189 4 MVSEKA--VVIFSRSSCCMCHVVKRLLLTL-------G--VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGK 70 (99)
T ss_pred hhccCC--EEEEECCCCHHHHHHHHHHHHc-------C--CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCE
Confidence 444433 6679999999999888766643 2 4455666665533 2223367899998 45665
Q ss_pred EE
Q 017971 129 PT 130 (363)
Q Consensus 129 ~~ 130 (363)
.+
T Consensus 71 ~i 72 (99)
T TIGR02189 71 LV 72 (99)
T ss_pred EE
Confidence 44
No 244
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.74 E-value=0.023 Score=48.29 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=56.4
Q ss_pred CCCeEEEEEEC-CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhh
Q 017971 59 SFDYILVDFYA-PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL 109 (363)
Q Consensus 59 ~~~~~lv~fy~-~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l 109 (363)
.++.++|.||+ .||..|....+.+.++++++...+ +.+..|+++. ..++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~i 112 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSI 112 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHH
Confidence 45788889995 789999999999999999987654 5565555542 2346
Q ss_pred hhhCCcC------cCCEEEEEeC-CEEEe-e----cCCCCHHHHHHHHH
Q 017971 110 ASKQEID------AFPTLKIFMH-GIPTE-Y----YGPRKAELLVRYLK 146 (363)
Q Consensus 110 ~~~~~i~------~~Pt~~~~~~-g~~~~-y----~g~~~~~~i~~~i~ 146 (363)
++.||+. .+|+.+++.. |.... + ...+..+++++.+.
T Consensus 113 a~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~ 161 (199)
T PTZ00253 113 ARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLE 161 (199)
T ss_pred HHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 7777774 3677777764 43221 1 22345555555554
No 245
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.68 E-value=0.014 Score=40.57 Aligned_cols=66 Identities=23% Similarity=0.344 Sum_probs=44.4
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh---hhhhCCcCcCCEEEEEeCCEEEeecCCCCHHH
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR---LASKQEIDAFPTLKIFMHGIPTEYYGPRKAEL 140 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~---l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~ 140 (363)
++.|..+||++|.+....+.+. ++.+-.+|.+++.. +.+..+...+|.++ .+|+.+ | ..++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~---------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~i---g--g~~~ 66 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN---------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELI---G--GSDD 66 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEE---e--CHHH
Confidence 6789999999999987777642 26667777766543 33335888999984 566543 2 2566
Q ss_pred HHHHH
Q 017971 141 LVRYL 145 (363)
Q Consensus 141 i~~~i 145 (363)
|.+|+
T Consensus 67 l~~~l 71 (72)
T cd03029 67 LEKYF 71 (72)
T ss_pred HHHHh
Confidence 66654
No 246
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.65 E-value=0.0038 Score=43.43 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=45.5
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhC---CcCcCCEEEEEeCCEEEeecCCCCHHHH
Q 017971 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ---EIDAFPTLKIFMHGIPTEYYGPRKAELL 141 (363)
Q Consensus 65 v~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~Pt~~~~~~g~~~~y~g~~~~~~i 141 (363)
..|..++|++|++....+++. ++.+-.+|.+++++....+ |..++|.+++ +|. ..-|...++.|
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~ 68 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH---------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKL 68 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC---------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHH
Confidence 467889999999988877641 2778888988887665554 7788999865 332 23344555555
Q ss_pred HH
Q 017971 142 VR 143 (363)
Q Consensus 142 ~~ 143 (363)
.+
T Consensus 69 ~~ 70 (72)
T TIGR02194 69 KA 70 (72)
T ss_pred Hh
Confidence 44
No 247
>PHA03050 glutaredoxin; Provisional
Probab=96.63 E-value=0.0068 Score=45.86 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=42.8
Q ss_pred HHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---c----hhhhhhCCcCcCCEEEEEe
Q 017971 53 FDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---Y----SRLASKQEIDAFPTLKIFM 125 (363)
Q Consensus 53 f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---~----~~l~~~~~i~~~Pt~~~~~ 125 (363)
.++.+++++ ++.|..+||++|++....+++..-.. -.+-.+|.++ . ..+.+.-|-..+|++++
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~------~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI-- 75 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKR------GAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF-- 75 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCc------CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--
Confidence 445555544 67799999999999988887653110 1344556554 2 23445557789999954
Q ss_pred CCEEE
Q 017971 126 HGIPT 130 (363)
Q Consensus 126 ~g~~~ 130 (363)
+|+.+
T Consensus 76 ~g~~i 80 (108)
T PHA03050 76 GKTSI 80 (108)
T ss_pred CCEEE
Confidence 55543
No 248
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.62 E-value=0.01 Score=42.41 Aligned_cols=77 Identities=26% Similarity=0.271 Sum_probs=58.1
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC---EEEeecCCCCHHH
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAEL 140 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g---~~~~y~g~~~~~~ 140 (363)
++.|..+.|+-|..+...+.++... .++.+-.||.++++++..+|+. .+|.+.+=..+ ....-.+..+.+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~-----~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~ 75 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE-----FPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQ 75 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT-----STCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh-----cCceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHH
Confidence 6889999999999999888876532 2389999999999999999995 89997763211 1234567888888
Q ss_pred HHHHHH
Q 017971 141 LVRYLK 146 (363)
Q Consensus 141 i~~~i~ 146 (363)
|.+|++
T Consensus 76 L~~~L~ 81 (81)
T PF05768_consen 76 LRAWLE 81 (81)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 888874
No 249
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.59 E-value=0.0036 Score=44.42 Aligned_cols=55 Identities=15% Similarity=0.359 Sum_probs=38.8
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh----CCcCcCCEEEEEeCCEE
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK----QEIDAFPTLKIFMHGIP 129 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~~~Pt~~~~~~g~~ 129 (363)
++.|+.+||++|.+....+++. + +.+-.+|.+.+++..++ .+..++|+++ .+|+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-------~--i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~--i~g~~ 59 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-------G--VTFTEIRVDGDPALRDEMMQRSGRRTVPQIF--IGDVH 59 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-------C--CCcEEEEecCCHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence 3568899999999998888752 1 56667777777655444 4678899984 35543
No 250
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.57 E-value=0.0058 Score=42.75 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=39.7
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh----CCcC-cCCEEEEEeCCEEE
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK----QEID-AFPTLKIFMHGIPT 130 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~-~~Pt~~~~~~g~~~ 130 (363)
++.|+.++|++|++....+++. ++.+-.+|.+.+++..++ .+.. ++|+++ .+|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCEEE
Confidence 5678899999999988777652 267777888877555443 4666 899875 455443
No 251
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.56 E-value=0.018 Score=40.83 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=57.8
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhH
Q 017971 277 IVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFF 355 (363)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~ 355 (363)
+|........+.....+.+++..++. +.+..+|..+.+...+.+|+ ...|++++ +|+ ....|....+.++.+
T Consensus 5 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~vPt~~~---~g~-~~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 5 LFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGI---MAVPAIVI---NGD-VEFIGAPTKEELVEA 77 (82)
T ss_pred EEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCC---ccCCEEEE---CCE-EEEecCCCHHHHHHH
Confidence 34455677778888899999888776 99999999988899999998 56899986 444 255566666777766
Q ss_pred hhhhh
Q 017971 356 MLTLL 360 (363)
Q Consensus 356 ~~~~~ 360 (363)
+...|
T Consensus 78 l~~~~ 82 (82)
T TIGR00411 78 IKKRL 82 (82)
T ss_pred HHhhC
Confidence 65543
No 252
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.55 E-value=0.026 Score=40.21 Aligned_cols=71 Identities=10% Similarity=0.217 Sum_probs=49.6
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhh---hhCCcCcCCEEEEEeCCEEEeecCCCCHHH
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA---SKQEIDAFPTLKIFMHGIPTEYYGPRKAEL 140 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~---~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~ 140 (363)
++.|+.+||++|++....+++ . ++.|-.+|.+++++.. +..+...+|.+++ ++.. -+....+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~--gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~~---~~Gf~~~~ 68 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R--GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDLS---WSGFRPDM 68 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C--CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCEE---EecCCHHH
Confidence 567889999999998777753 2 2788888998877643 3456788999965 4432 23466777
Q ss_pred HHHHHHhh
Q 017971 141 LVRYLKKF 148 (363)
Q Consensus 141 i~~~i~~~ 148 (363)
|.+.+...
T Consensus 69 l~~~~~~~ 76 (81)
T PRK10329 69 INRLHPAP 76 (81)
T ss_pred HHHHHHhh
Confidence 77776554
No 253
>PLN02309 5'-adenylylsulfate reductase
Probab=96.53 E-value=0.017 Score=55.11 Aligned_cols=103 Identities=11% Similarity=0.123 Sum_probs=75.7
Q ss_pred CCcccCChhhHHhhh---cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEecc-CchhHHh-hcCCCCC
Q 017971 253 PLSVPINQDTLNLLK---DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIK-QFADFAD-TFEANKK 325 (363)
Q Consensus 253 p~~~~lt~~~~~~l~---~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~-~~~~~~~-~~gi~~~ 325 (363)
+.+.+++.++++.+. ..++++++.|+. .-....+.+...+.++|+++.+ +.|+.+|++ .+..+++ .|++
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyA-pWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I--- 420 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYA-PWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL--- 420 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEEC-CCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC---
Confidence 467789999998865 355666666654 4677778888899999998765 999999998 6677886 5999
Q ss_pred CCCCeEEEEeCCC-CeeEEE-EEEeehhhhhHhhhh
Q 017971 326 SKLPKMVVWDGNE-NYLTVS-INVLKTRVCFFMLTL 359 (363)
Q Consensus 326 ~~~P~~vi~~~~~-~y~~~~-~~~~~~~~~~~~~~~ 359 (363)
..+|++++|.+++ +.-... +.-..+-+..|+.++
T Consensus 421 ~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 421 GSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 6899999998764 322222 345556677787764
No 254
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=96.48 E-value=0.023 Score=43.12 Aligned_cols=65 Identities=12% Similarity=0.253 Sum_probs=53.2
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCC
Q 017971 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE 338 (363)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~ 338 (363)
++++++-|. ..-......+-..+.++|+++++ ..|..||.++.+.+.+.+++ ...|+++.+..+.
T Consensus 14 ~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I---~amPtfvffkngk 79 (114)
T cd02986 14 EKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDI---SYIPSTIFFFNGQ 79 (114)
T ss_pred CCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCc---eeCcEEEEEECCc
Confidence 445555544 45677778888999999999999 99999999999999999999 5679999887553
No 255
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.47 E-value=0.021 Score=54.56 Aligned_cols=104 Identities=11% Similarity=0.072 Sum_probs=74.0
Q ss_pred CCCcccCChhhHHhhhc---CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCch-hHH-hhcCCCC
Q 017971 252 LPLSVPINQDTLNLLKD---DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFA-DFA-DTFEANK 324 (363)
Q Consensus 252 ~p~~~~lt~~~~~~l~~---~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~-~~~-~~~gi~~ 324 (363)
.+.+.++|.+|++.+.. .++++++.|+. .-....+.+...+.++|.++++ +.|+.+|++..+ .++ +.+++
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyA-pWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I-- 426 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYA-PWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL-- 426 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEEC-CCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC--
Confidence 34688899999998653 55666666664 4677778888999999998865 889999988643 354 67999
Q ss_pred CCCCCeEEEEeCCC-CeeEE-EEEEeehhhhhHhhhh
Q 017971 325 KSKLPKMVVWDGNE-NYLTV-SINVLKTRVCFFMLTL 359 (363)
Q Consensus 325 ~~~~P~~vi~~~~~-~y~~~-~~~~~~~~~~~~~~~~ 359 (363)
..+|++++|..++ +...+ .+.-..+-+..||.++
T Consensus 427 -~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 -GSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred -CccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 6899999998874 22222 2344455566676653
No 256
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.43 E-value=0.0085 Score=41.76 Aligned_cols=55 Identities=13% Similarity=0.254 Sum_probs=40.0
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhCCcCcCCEEEEEeCCEE
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEIDAFPTLKIFMHGIP 129 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~~ 129 (363)
++.|+.+||++|++....+++. ++.+-.+|+.++++ +.+..+-..+|++++ +|+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~---------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~ 61 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK---------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKL 61 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC---------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEE
Confidence 5678999999999988777752 26777888887765 444456778899853 5543
No 257
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.42 E-value=0.043 Score=46.24 Aligned_cols=82 Identities=12% Similarity=0.151 Sum_probs=62.0
Q ss_pred hcCCCcccCChhhHHh-hhcCC--CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCC
Q 017971 250 NFLPLSVPINQDTLNL-LKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKS 326 (363)
Q Consensus 250 ~~~p~~~~lt~~~~~~-l~~~~--~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~ 326 (363)
..+..+.++|..++.. +.... .++++.|+ .......+.+...|..+|.+|+++.|+.||++. ....|++ .
T Consensus 79 ~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~---~~~~~~i---~ 151 (192)
T cd02988 79 SKFGEVYEISKPDYVREVTEASKDTWVVVHLY-KDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ---CIPNYPD---K 151 (192)
T ss_pred CCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH---hHhhCCC---C
Confidence 3567777888777764 33332 35666565 446777888889999999999999999999975 3577887 6
Q ss_pred CCCeEEEEeCCC
Q 017971 327 KLPKMVVWDGNE 338 (363)
Q Consensus 327 ~~P~~vi~~~~~ 338 (363)
.+|++++|....
T Consensus 152 ~lPTlliyk~G~ 163 (192)
T cd02988 152 NLPTILVYRNGD 163 (192)
T ss_pred CCCEEEEEECCE
Confidence 799999998764
No 258
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.33 E-value=0.17 Score=49.65 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=91.3
Q ss_pred CCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhh---cCCCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHH
Q 017971 216 DKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN---FLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTT 292 (363)
Q Consensus 216 ~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~---~~p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 292 (363)
...|++.+..++.+....|.|--.-.++..||..- +-+ -+.++++..+.+..-.+|.-+.+|..............
T Consensus 60 ~~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~ 138 (515)
T TIGR03140 60 LRKPSFTILRDGADTGIRFAGIPGGHEFTSLVLAILQVGGH-GPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQA 138 (515)
T ss_pred CCCCeEEEecCCcccceEEEecCCcHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHH
Confidence 45699888765444557788876677777776553 444 47788888888887778887777777788888888999
Q ss_pred HHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971 293 LKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (363)
Q Consensus 293 l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi 333 (363)
+.++|..++++..-++|+..++++++.+++ ...|++++
T Consensus 139 ~~~~a~~~p~i~~~~id~~~~~~~~~~~~v---~~VP~~~i 176 (515)
T TIGR03140 139 LNQMALLNPNISHTMIDGALFQDEVEALGI---QGVPAVFL 176 (515)
T ss_pred HHHHHHhCCCceEEEEEchhCHHHHHhcCC---cccCEEEE
Confidence 999999999999999999999999999998 68899987
No 259
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.33 E-value=0.18 Score=49.65 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=91.5
Q ss_pred CCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhh---cCCCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHH
Q 017971 217 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN---FLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTL 293 (363)
Q Consensus 217 ~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~---~~p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l 293 (363)
..|++.+.+++......|.|--.-.++..||..- +-+ -+.+++...+.+..-.+|+-+.+|.........+....+
T Consensus 60 ~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~ 138 (517)
T PRK15317 60 RKPSFSITRPGEDTGVRFAGIPMGHEFTSLVLALLQVGGH-PPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQAL 138 (517)
T ss_pred CCCEEEEEcCCccceEEEEecCccHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHH
Confidence 4699888765444457888877777888887654 333 466788888888877788888878777888888899999
Q ss_pred HHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971 294 KAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (363)
Q Consensus 294 ~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi 333 (363)
.++|..++++.+-++|+..++++++.+++ ...|++++
T Consensus 139 ~~~a~~~~~i~~~~id~~~~~~~~~~~~v---~~VP~~~i 175 (517)
T PRK15317 139 NLMAVLNPNITHTMIDGALFQDEVEARNI---MAVPTVFL 175 (517)
T ss_pred HHHHHhCCCceEEEEEchhCHhHHHhcCC---cccCEEEE
Confidence 99999988999999999999999999998 68899976
No 260
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.30 E-value=0.016 Score=42.95 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=42.7
Q ss_pred hhHHHhHcCCCeEEEEEE----CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhh----hhCCcCcCCEEE
Q 017971 51 SNFDSAISSFDYILVDFY----APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA----SKQEIDAFPTLK 122 (363)
Q Consensus 51 ~~f~~~l~~~~~~lv~fy----~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~~~Pt~~ 122 (363)
+..++++++++. +|.-. .|||++|++....+.+. + +.+..+|..+++++. +.-|-..+|+++
T Consensus 3 ~~v~~~i~~~~V-vvf~kg~~~~~~Cp~C~~ak~lL~~~-------~--i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf 72 (97)
T TIGR00365 3 ERIKEQIKENPV-VLYMKGTPQFPQCGFSARAVQILKAC-------G--VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY 72 (97)
T ss_pred HHHHHHhccCCE-EEEEccCCCCCCCchHHHHHHHHHHc-------C--CCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 345566666544 33332 38999999888777653 1 567778887766544 334667889985
Q ss_pred EEeCCEE
Q 017971 123 IFMHGIP 129 (363)
Q Consensus 123 ~~~~g~~ 129 (363)
.+|+.
T Consensus 73 --i~g~~ 77 (97)
T TIGR00365 73 --VKGEF 77 (97)
T ss_pred --ECCEE
Confidence 35543
No 261
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.27 E-value=0.015 Score=44.12 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=62.2
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEeec------CChhHHHHHHHH-hhhhhHHHHh--------hhcchhhhhhcCCC-
Q 017971 153 VSILNSDAEVSDFVENAGTFFPLFIGFG------LDESVMSNLALK-YKKKAWFAVA--------KDFSEDTMVLYDFD- 216 (363)
Q Consensus 153 v~~i~~~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~~a~~-~~~~~~~~~~--------~~~~~~~~~~~~~~- 216 (363)
...+.+. .+++.+...+ .++|-|. +..+.+..+|.+ ........++ ...+.++.++|++.
T Consensus 6 ~v~LD~~-tFdKvi~kf~---~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 6 CVPLDEL-TFDKVIPKFK---YVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp SEEESTT-HHHHHGGGSS---EEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred eeeccce-ehhheeccCc---eEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 4556554 5999998886 3555553 234568888833 3221111111 13468899999995
Q ss_pred -CCCeEEEEcCCCCCcccc--cCCCCHHHHHHHHHhhc
Q 017971 217 -KVPALVALQPSYNEHNIF--YGPFDEEFLEEFIKQNF 251 (363)
Q Consensus 217 -~~p~iv~~~~~~~~~~~~--~g~~~~~~l~~fi~~~~ 251 (363)
.+|.+.+|..+.+++..| .|+++.+.|..|+++++
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence 469999999877888888 78999999999999985
No 262
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=96.25 E-value=0.074 Score=42.24 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=61.3
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCC-CeeEEEE--
Q 017971 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE-NYLTVSI-- 345 (363)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~-~y~~~~~-- 345 (363)
.+++++-|+ ..-......+...|.++|+++++ ..|..||.++.+.+.+.+++ . +..|.+.+++... +-...+|
T Consensus 23 ~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I-~-~~~t~~~ffk~g~~~vd~~tG~~ 99 (142)
T PLN00410 23 ERLVVIRFG-HDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYEL-Y-DPCTVMFFFRNKHIMIDLGTGNN 99 (142)
T ss_pred CCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCc-c-CCCcEEEEEECCeEEEEEecccc
Confidence 345555554 45677778888999999999999 77899999999999999999 2 3434554777654 4444445
Q ss_pred ------EEeehhhhhHhhhhh
Q 017971 346 ------NVLKTRVCFFMLTLL 360 (363)
Q Consensus 346 ------~~~~~~~~~~~~~~~ 360 (363)
...++.++.-+..++
T Consensus 100 ~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 100 NKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred cccccccCCHHHHHHHHHHHH
Confidence 345555555555444
No 263
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.20 E-value=0.019 Score=41.91 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=41.9
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC--ccc------------------------------hhhhh
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA--DKY------------------------------SRLAS 111 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~--~~~------------------------------~~l~~ 111 (363)
++.|+++.|++|..+.+.+.++..... .++.+..... ... ....+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD---GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC---CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 467999999999999999999874332 2355554443 221 23566
Q ss_pred hCCcCcCCEEEEEe
Q 017971 112 KQEIDAFPTLKIFM 125 (363)
Q Consensus 112 ~~~i~~~Pt~~~~~ 125 (363)
+.|+.++|++++..
T Consensus 78 ~~g~~g~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTGTPTFVVNG 91 (98)
T ss_pred HcCCCCCCEEEECC
Confidence 78999999998754
No 264
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.036 Score=41.72 Aligned_cols=65 Identities=17% Similarity=0.374 Sum_probs=53.4
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCC
Q 017971 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE 338 (363)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~ 338 (363)
++++++-|+ ..-....+.+...+.++|.+|+++.|..+|.++...+++.+++ ...|++++++...
T Consensus 21 ~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V---~~~PTf~f~k~g~ 85 (106)
T KOG0907|consen 21 DKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNV---KAMPTFVFYKGGE 85 (106)
T ss_pred CCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCc---eEeeEEEEEECCE
Confidence 355555554 4456667888999999999999999999999988889999999 6789999997763
No 265
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=96.13 E-value=0.06 Score=41.76 Aligned_cols=100 Identities=12% Similarity=0.033 Sum_probs=68.7
Q ss_pred cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCc-----------hhHHhhcCCC
Q 017971 255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQF-----------ADFADTFEAN 323 (363)
Q Consensus 255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~-----------~~~~~~~gi~ 323 (363)
+.++|...+.....+++..++.| ........+.+...|++++++. +..+.++|.+.. ..+.+.+++.
T Consensus 8 ~~~it~~~~~~~i~~~~~~iv~f-~~~~Cp~C~~~~P~l~~~~~~~-~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 8 LEVTTVVRALEALDKKETATFFI-GRKTCPYCRKFSGTLSGVVAQT-KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred ceecCHHHHHHHHHcCCcEEEEE-ECCCChhHHHHhHHHHHHHHhc-CCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 45567677776666666655554 4568888899999999999883 366777777632 3566777762
Q ss_pred -CCCCCCeEEEEeCCCCeeEEEE-EEeehhhhhHh
Q 017971 324 -KKSKLPKMVVWDGNENYLTVSI-NVLKTRVCFFM 356 (363)
Q Consensus 324 -~~~~~P~~vi~~~~~~y~~~~~-~~~~~~~~~~~ 356 (363)
.-...|++++++....-....| ..+..++..|.
T Consensus 86 ~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred ccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence 1245899999998865555555 44577777664
No 266
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.02 E-value=0.0022 Score=56.48 Aligned_cols=94 Identities=23% Similarity=0.460 Sum_probs=75.4
Q ss_pred HHHhH--cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe-CccchhhhhhCCcCcCCEEEEEeCCEE
Q 017971 53 FDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-ADKYSRLASKQEIDAFPTLKIFMHGIP 129 (363)
Q Consensus 53 f~~~l--~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd-~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 129 (363)
...++ ++..++-+.||+.||+..+..+|+++-....+.. +....++ -..-+++..++++.+.|++.+....-+
T Consensus 67 l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~----i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~ 142 (319)
T KOG2640|consen 67 LLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS----IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCP 142 (319)
T ss_pred HHHhhccccCCcccccchhcccCcccccCcccchhhhhccc----cccccHHHHhhcccchhccccccCCcceeeccccc
Confidence 34444 4478999999999999999999999988776652 3333333 234477889999999999999888888
Q ss_pred EeecCCCCHHHHHHHHHhhcC
Q 017971 130 TEYYGPRKAELLVRYLKKFVA 150 (363)
Q Consensus 130 ~~y~g~~~~~~i~~~i~~~~~ 150 (363)
..|.|.+...+|++|-.+.++
T Consensus 143 ~~~~~~r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 143 ASYRGERDLASLVNFYTEITP 163 (319)
T ss_pred hhhcccccHHHHHHHHHhhcc
Confidence 899999999999999998886
No 267
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.84 E-value=0.1 Score=43.17 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=74.6
Q ss_pred CCCeEEcChhhHHHhH---cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcC
Q 017971 42 DGKVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF 118 (363)
Q Consensus 42 ~~~v~~l~~~~f~~~l---~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 118 (363)
-+.|..++..+|.+-+ .++-.++|..|...-+.|.-+...++.+|..+.+ ++|.++=.+.. ...|--...
T Consensus 90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~at~c---IpNYPe~nl 162 (240)
T KOG3170|consen 90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIPATTC---IPNYPESNL 162 (240)
T ss_pred ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEecccccc---cCCCcccCC
Confidence 3679999999998866 3334667889999999999999999999987764 77777654332 233556788
Q ss_pred CEEEEEeCCEEE-------eecCCCC-HHHHHHHHHhhcCCCceecC
Q 017971 119 PTLKIFMHGIPT-------EYYGPRK-AELLVRYLKKFVAPDVSILN 157 (363)
Q Consensus 119 Pt~~~~~~g~~~-------~y~g~~~-~~~i~~~i~~~~~~~v~~i~ 157 (363)
||+++|..|... .+.|... .+++. |..-..++.+....
T Consensus 163 PTl~VY~~G~lk~q~igll~lgG~n~t~ed~e-~~L~qaga~l~d~~ 208 (240)
T KOG3170|consen 163 PTLLVYHHGALKKQMIGLLELGGMNLTMEDVE-DFLVQAGAALTDGD 208 (240)
T ss_pred CeEEEeecchHHhheehhhhhcCCcCCHHHHH-HHHHhccccccccc
Confidence 999999988432 2455543 44444 44444454555443
No 268
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.74 E-value=0.21 Score=37.72 Aligned_cols=90 Identities=12% Similarity=0.057 Sum_probs=63.1
Q ss_pred ChhhHHHhHcCC-CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971 49 DESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (363)
Q Consensus 49 ~~~~f~~~l~~~-~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 127 (363)
+.+++++++... +..+|-|+...-+ .....|.++|..+... +.|+... +..+.+++++. .|.+++|++.
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd---~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~ 76 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRED---YKFHHTF---DSEIFKSLKVS-PGQLVVFQPE 76 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccC---CEEEEEC---hHHHHHhcCCC-CCceEEECcH
Confidence 456688887666 7888888776543 5677889999887543 7887655 45677788775 5778888433
Q ss_pred --------EEEeecCC-CCHHH-HHHHHHhh
Q 017971 128 --------IPTEYYGP-RKAEL-LVRYLKKF 148 (363)
Q Consensus 128 --------~~~~y~g~-~~~~~-i~~~i~~~ 148 (363)
....|.|. .+.+. |.+|++.+
T Consensus 77 ~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 77 KFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 33468887 56655 99998753
No 269
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.73 E-value=0.078 Score=38.56 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=53.4
Q ss_pred cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971 268 DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (363)
Q Consensus 268 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi 333 (363)
.-.+|+-+.+|..............+.+++..++++.+..+|.++++...+.+|+ ...|++++
T Consensus 9 ~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V---~~vPt~vi 71 (89)
T cd03026 9 RLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGI---MSVPAIFL 71 (89)
T ss_pred hcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCC---ccCCEEEE
Confidence 3456777777777777777888899999999998899999999999999999999 57899976
No 270
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.68 E-value=0.016 Score=48.13 Aligned_cols=158 Identities=15% Similarity=0.171 Sum_probs=60.1
Q ss_pred EEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhh---hhhCCcCcC-----CEEEEEeCC---EEEeecC
Q 017971 66 DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL---ASKQEIDAF-----PTLKIFMHG---IPTEYYG 134 (363)
Q Consensus 66 ~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l---~~~~~i~~~-----Pt~~~~~~g---~~~~y~g 134 (363)
+|+.|.|+.|-.+.|.|.++...+.+. +.+-.+=...-+.+ ....++++- |.-..|.-. +.....|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~---i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~qg 78 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK---IEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQG 78 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT---EEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHHHHHTTT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc---EEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHhC
Confidence 589999999999999999999988654 55544433222211 111111000 000000000 0011235
Q ss_pred CCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCChhHHHHHHHHhhhh-hHHHHhhhcchhhhhhc
Q 017971 135 PRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKK-AWFAVAKDFSEDTMVLY 213 (363)
Q Consensus 135 ~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 213 (363)
...+..+..-+++.+.-.-..+++.+-+.+..++-... .+ .....+... ..-.+ ..+..++...
T Consensus 79 ~k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD----------~~---~F~~d~~S~~~~~~~--~~D~~la~~m 143 (176)
T PF13743_consen 79 KKKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLD----------VE---MFKEDLHSDEAKQAF--QEDQQLAREM 143 (176)
T ss_dssp -H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT------------HH---HHHHHHTSHHHHHHH--HHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCC----------HH---HHHHHHhChHHHHHH--HHHHHHHHHc
Confidence 44455555555555544444444433343444332211 11 111111111 11111 2346678899
Q ss_pred CCCCCCeEEEEcCC-CCCcccccCCCCHH
Q 017971 214 DFDKVPALVALQPS-YNEHNIFYGPFDEE 241 (363)
Q Consensus 214 ~~~~~p~iv~~~~~-~~~~~~~~g~~~~~ 241 (363)
++++.|+++++... .+......|..+.+
T Consensus 144 ~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~ 172 (176)
T PF13743_consen 144 GITGFPTLVIFNENNEEYGILIEGYYSYE 172 (176)
T ss_dssp T-SSSSEEEEE------------------
T ss_pred CCCCCCEEEEEeccccccccccccccccc
Confidence 99999999999843 23344455544433
No 271
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.67 E-value=0.055 Score=44.53 Aligned_cols=92 Identities=12% Similarity=0.091 Sum_probs=67.9
Q ss_pred HHHHHHHHhhcCCCcccCC-hhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhh
Q 017971 241 EFLEEFIKQNFLPLSVPIN-QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADT 319 (363)
Q Consensus 241 ~~l~~fi~~~~~p~~~~lt-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~ 319 (363)
+.-..|+.+ +..-+.++. +..+-..+.....++|-|+.+ +....+-.-+-|..+|+.|-+.+|..||+...|-++..
T Consensus 55 ~kr~~~~~~-GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~-~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~k 132 (211)
T KOG1672|consen 55 EKRKEWLSK-GHGEYEEVASEKDFFEEVKKSEKVVCHFYRP-EFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTK 132 (211)
T ss_pred HHHHHHHHc-CCceEEEeccHHHHHHHhhcCceEEEEEEcC-CCcceehHHHHHHHHHHhcccceEEEEecccCceeeee
Confidence 344456555 566677776 445555665667788888755 33344445567888899999999999999999999999
Q ss_pred cCCCCCCCCCeEEEEeCC
Q 017971 320 FEANKKSKLPKMVVWDGN 337 (363)
Q Consensus 320 ~gi~~~~~~P~~vi~~~~ 337 (363)
++| .-+|+++++...
T Consensus 133 L~I---kVLP~v~l~k~g 147 (211)
T KOG1672|consen 133 LNI---KVLPTVALFKNG 147 (211)
T ss_pred eee---eEeeeEEEEEcC
Confidence 999 678999998876
No 272
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=95.65 E-value=0.11 Score=38.02 Aligned_cols=94 Identities=11% Similarity=0.170 Sum_probs=67.3
Q ss_pred hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccC--chhHHhhcCCCCCCCCCeEEEEe--
Q 017971 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWD-- 335 (363)
Q Consensus 261 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~--~~~~~~~~gi~~~~~~P~~vi~~-- 335 (363)
-.+..+.+....+++++.. +...-....+.+.++|..-+| =..+||||.+ -.++|+.+-+ +.+.-|.-..+.
T Consensus 10 KdfKKLLRTr~NVLvLy~k--s~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv-~~~~kp~~~~LkHY 86 (112)
T cd03067 10 KDFKKLLRTRNNVLVLYSK--SAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKV-DPSSKPKPVELKHY 86 (112)
T ss_pred HHHHHHHhhcCcEEEEEec--chhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHcc-CCCCCCCcchhhcc
Confidence 4566777777788887764 344445667899999999998 7789999987 5779999998 333334434333
Q ss_pred CCCC-eeEEEEEEeehhhhhHhh
Q 017971 336 GNEN-YLTVSINVLKTRVCFFML 357 (363)
Q Consensus 336 ~~~~-y~~~~~~~~~~~~~~~~~ 357 (363)
.+|. ....+..++..-+..||.
T Consensus 87 KdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 87 KDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred cCCCccccccchhhHHHHHHHhh
Confidence 4564 567788888888888874
No 273
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=95.62 E-value=0.1 Score=40.22 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=50.7
Q ss_pred CCcEEEEEEeC------CChhhHHHHHHHHHHHHHhCCC-cEEEEEeccC-------chhHHhhcCCCCCCCCCeEEEEe
Q 017971 270 KRKIVLAIVED------ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ-------FADFADTFEANKKSKLPKMVVWD 335 (363)
Q Consensus 270 ~~~~~i~~~~~------~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~-------~~~~~~~~gi~~~~~~P~~vi~~ 335 (363)
++++++.|+.+ .=....+.....+++++.++++ +.|+.||..+ ...+...+++ . ...|++++++
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~-~~iPT~~~~~ 98 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-T-TGVPTLLRWK 98 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-c-cCCCEEEEEc
Confidence 56788877753 2344457778899999999985 9999999865 3478888888 3 4899999996
Q ss_pred CCC
Q 017971 336 GNE 338 (363)
Q Consensus 336 ~~~ 338 (363)
..+
T Consensus 99 ~~~ 101 (119)
T cd02952 99 TPQ 101 (119)
T ss_pred CCc
Confidence 543
No 274
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.58 E-value=0.045 Score=39.91 Aligned_cols=64 Identities=16% Similarity=0.284 Sum_probs=40.3
Q ss_pred HhHcCCCeEEEEEEC----CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhh----hCCcCcCCEEEEEeC
Q 017971 55 SAISSFDYILVDFYA----PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS----KQEIDAFPTLKIFMH 126 (363)
Q Consensus 55 ~~l~~~~~~lv~fy~----~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~----~~~i~~~Pt~~~~~~ 126 (363)
+.++++ +++|.-.+ |||++|++....+.+. + +.+..+|..+++++.+ .-|-..+|+++ .+
T Consensus 3 ~~i~~~-~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~--i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf--i~ 70 (90)
T cd03028 3 KLIKEN-PVVLFMKGTPEEPRCGFSRKVVQILNQL-------G--VDFGTFDILEDEEVRQGLKEYSNWPTFPQLY--VN 70 (90)
T ss_pred hhhccC-CEEEEEcCCCCCCCCcHHHHHHHHHHHc-------C--CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE--EC
Confidence 455554 44443332 7999999887777653 1 6677778777665433 34677899984 46
Q ss_pred CEEE
Q 017971 127 GIPT 130 (363)
Q Consensus 127 g~~~ 130 (363)
|+.+
T Consensus 71 g~~i 74 (90)
T cd03028 71 GELV 74 (90)
T ss_pred CEEE
Confidence 6543
No 275
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=95.47 E-value=0.12 Score=40.10 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=63.0
Q ss_pred HHhhhcCC-CcEEEEEEeCCChhhHHHHHHHHH---HHHHhCCC-cEEEEEeccCc-------------hhHHhhcCCCC
Q 017971 263 LNLLKDDK-RKIVLAIVEDETEEKSQKLVTTLK---AAASANRE-LVFCYVGIKQF-------------ADFADTFEANK 324 (363)
Q Consensus 263 ~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~l~---~~a~~~~~-~~f~~vd~~~~-------------~~~~~~~gi~~ 324 (363)
+......+ +++++.|.. ......+.+...+. .+...+.+ +.+..+|.+.. ..+.+.+++
T Consensus 6 ~~~a~~~~~k~vlv~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v-- 82 (125)
T cd02951 6 LAEAAADGKKPLLLLFSQ-PGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV-- 82 (125)
T ss_pred HHHHHHcCCCcEEEEEeC-CCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC--
Confidence 34444555 778777764 45666666665542 34444433 77888887643 568888998
Q ss_pred CCCCCeEEEEeCC-CC-eeEEEEEEeehhhhhHhhhhhc
Q 017971 325 KSKLPKMVVWDGN-EN-YLTVSINVLKTRVCFFMLTLLQ 361 (363)
Q Consensus 325 ~~~~P~~vi~~~~-~~-y~~~~~~~~~~~~~~~~~~~~~ 361 (363)
...|++++++++ |+ .....|....+.+..++..+++
T Consensus 83 -~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 83 -RFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred -ccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 578999999998 54 4556666666777777666553
No 276
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.039 Score=39.22 Aligned_cols=51 Identities=22% Similarity=0.383 Sum_probs=36.3
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch-----hhhhhC-CcCcCCEEEE
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-----RLASKQ-EIDAFPTLKI 123 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-----~l~~~~-~i~~~Pt~~~ 123 (363)
++.|..++|++|++....+.+ .+ +.+-.+|.++++ +..++- |.+.+|.+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-------~g--~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-------KG--VDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-------cC--CCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 567888999999988777762 22 666766766554 334444 7899999886
No 277
>PRK10638 glutaredoxin 3; Provisional
Probab=95.33 E-value=0.04 Score=39.41 Aligned_cols=56 Identities=13% Similarity=0.224 Sum_probs=38.8
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhh----hhhCCcCcCCEEEEEeCCEEE
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL----ASKQEIDAFPTLKIFMHGIPT 130 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~~~~~~g~~~ 130 (363)
++.|..+||++|++....+++. + +.+..+|++++++. .+..+...+|++++ +|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-------g--i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-------G--VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C--CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 5677889999999988777752 1 56677888766543 34456778998843 56544
No 278
>PTZ00062 glutaredoxin; Provisional
Probab=95.31 E-value=0.16 Score=43.17 Aligned_cols=74 Identities=11% Similarity=0.119 Sum_probs=54.4
Q ss_pred hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCe
Q 017971 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENY 340 (363)
Q Consensus 261 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y 340 (363)
+.+..+..++...+++++...-.+..+.+...|..++++++++.|..||.+ +++ ...|++++++.....
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V---~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DAN---NEYGVFEFYQNSQLI 75 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCc---ccceEEEEEECCEEE
Confidence 444444444334455566555677888899999999999999999999987 777 678999999876554
Q ss_pred eEEEE
Q 017971 341 LTVSI 345 (363)
Q Consensus 341 ~~~~~ 345 (363)
...++
T Consensus 76 ~r~~G 80 (204)
T PTZ00062 76 NSLEG 80 (204)
T ss_pred eeeeC
Confidence 44444
No 279
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=95.07 E-value=0.13 Score=34.83 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=43.1
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971 277 IVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (363)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi 333 (363)
+|........+.....+++++..++++.|..+|.++.+++.+.+|+ ...|++++
T Consensus 5 ~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i---~~vPti~i 58 (67)
T cd02973 5 VFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGV---MSVPAIVI 58 (67)
T ss_pred EEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCC---cccCEEEE
Confidence 3444456666778888888888777799999999988889999998 56899876
No 280
>PRK10824 glutaredoxin-4; Provisional
Probab=94.55 E-value=0.094 Score=40.02 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=41.2
Q ss_pred hhHHHhHcCCCeEEEEEEC----CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh----CCcCcCCEEE
Q 017971 51 SNFDSAISSFDYILVDFYA----PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK----QEIDAFPTLK 122 (363)
Q Consensus 51 ~~f~~~l~~~~~~lv~fy~----~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~~~Pt~~ 122 (363)
+-.++.+++++.++. --. |||++|++....+.+.. +.+..+|..+++++... -|-+.+|+++
T Consensus 6 ~~v~~~I~~~~Vvvf-~Kg~~~~p~Cpyc~~ak~lL~~~~---------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIF 75 (115)
T PRK10824 6 EKIQRQIAENPILLY-MKGSPKLPSCGFSAQAVQALSACG---------ERFAYVDILQNPDIRAELPKYANWPTFPQLW 75 (115)
T ss_pred HHHHHHHhcCCEEEE-ECCCCCCCCCchHHHHHHHHHHcC---------CCceEEEecCCHHHHHHHHHHhCCCCCCeEE
Confidence 345666766544433 332 69999999888776642 34445666666554443 3567888876
Q ss_pred EEeCCEEE
Q 017971 123 IFMHGIPT 130 (363)
Q Consensus 123 ~~~~g~~~ 130 (363)
+ +|+.+
T Consensus 76 I--~G~~I 81 (115)
T PRK10824 76 V--DGELV 81 (115)
T ss_pred E--CCEEE
Confidence 5 55443
No 281
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=94.49 E-value=0.22 Score=41.69 Aligned_cols=102 Identities=22% Similarity=0.285 Sum_probs=75.4
Q ss_pred CCCeEEcCh-hhHHHhHcCC---CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc
Q 017971 42 DGKVIELDE-SNFDSAISSF---DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA 117 (363)
Q Consensus 42 ~~~v~~l~~-~~f~~~l~~~---~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~ 117 (363)
-..|.++++ +.|-..|++. -.++|..|-+.-.-|..+-..+.-+|.++. .+.|.++-.+ +.....+|..++
T Consensus 137 ~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP----~vKFckikss-~~gas~~F~~n~ 211 (273)
T KOG3171|consen 137 YGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP----IVKFCKIKSS-NTGASDRFSLNV 211 (273)
T ss_pred cceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC----ceeEEEeeec-cccchhhhcccC
Confidence 457888855 6688888544 367888999999999999988888886653 4889888754 355678999999
Q ss_pred CCEEEEEeCCEEEe-e-------cCCCCHHHHHHHHHhh
Q 017971 118 FPTLKIFMHGIPTE-Y-------YGPRKAELLVRYLKKF 148 (363)
Q Consensus 118 ~Pt~~~~~~g~~~~-y-------~g~~~~~~i~~~i~~~ 148 (363)
.|++.+|++|+.+. | -...-+..+..|++.+
T Consensus 212 lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 212 LPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred CceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 99999999998653 1 1234455566666555
No 282
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=93.98 E-value=0.56 Score=36.40 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=51.0
Q ss_pred ChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHH-HHH--HHHHh-CCCcEEEEEeccCchhHHhh--------cCCCCCC
Q 017971 259 NQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVT-TLK--AAASA-NRELVFCYVGIKQFADFADT--------FEANKKS 326 (363)
Q Consensus 259 t~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~l~--~~a~~-~~~~~f~~vd~~~~~~~~~~--------~gi~~~~ 326 (363)
+.+.+......++|+++.|. .+-....+.+.+ .+. +++.. .+++.++.+|.++.+...+. +|. .
T Consensus 4 ~~eal~~Ak~~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~---~ 79 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQ---G 79 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCC---C
Confidence 45566777788888887765 345555555543 222 34444 35688889999876554332 355 5
Q ss_pred CCCeEEEEeCCCC
Q 017971 327 KLPKMVVWDGNEN 339 (363)
Q Consensus 327 ~~P~~vi~~~~~~ 339 (363)
+.|++++++++|+
T Consensus 80 G~Pt~vfl~~~G~ 92 (124)
T cd02955 80 GWPLNVFLTPDLK 92 (124)
T ss_pred CCCEEEEECCCCC
Confidence 7899999999985
No 283
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=93.92 E-value=0.44 Score=36.55 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=48.1
Q ss_pred hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCch-hHHhhcCCCCCCCCCeEEEEeCCC
Q 017971 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFA-DFADTFEANKKSKLPKMVVWDGNE 338 (363)
Q Consensus 261 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~-~~~~~~gi~~~~~~P~~vi~~~~~ 338 (363)
+.+......++|+++.|.. .-....+.+...+.+.+..... ..|+.+|.+..+ .....+++ .....|++++++++|
T Consensus 10 ~al~~A~~~~kpVlV~F~a-~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~-~g~~vPt~~f~~~~G 87 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHK-TWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSP-DGGYIPRILFLDPSG 87 (117)
T ss_pred HHHHHHHHcCCcEEEEEeC-CcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhccc-CCCccceEEEECCCC
Confidence 3444555667788777764 4566666777667665543322 456666665443 34466777 233489999999887
Q ss_pred C
Q 017971 339 N 339 (363)
Q Consensus 339 ~ 339 (363)
+
T Consensus 88 k 88 (117)
T cd02959 88 D 88 (117)
T ss_pred C
Confidence 4
No 284
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=93.78 E-value=0.46 Score=35.36 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=46.0
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCcEEEEEeccCc-----------------------hhHHhhcCCCC
Q 017971 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASAN--RELVFCYVGIKQF-----------------------ADFADTFEANK 324 (363)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~--~~~~f~~vd~~~~-----------------------~~~~~~~gi~~ 324 (363)
++++++.|+.. ...........+.++..++ +++.++.++.+.. ..+.+.||+
T Consensus 19 ~k~~ll~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (116)
T cd02966 19 GKVVLVNFWAS-WCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV-- 95 (116)
T ss_pred CCEEEEEeecc-cChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc--
Confidence 45566665543 4455566677777777777 3477777766553 567788888
Q ss_pred CCCCCeEEEEeCCCCe
Q 017971 325 KSKLPKMVVWDGNENY 340 (363)
Q Consensus 325 ~~~~P~~vi~~~~~~y 340 (363)
...|.+++++++|+.
T Consensus 96 -~~~P~~~l~d~~g~v 110 (116)
T cd02966 96 -RGLPTTFLIDRDGRI 110 (116)
T ss_pred -CccceEEEECCCCcE
Confidence 478999999999853
No 285
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=93.71 E-value=0.89 Score=39.17 Aligned_cols=56 Identities=9% Similarity=0.044 Sum_probs=47.0
Q ss_pred cccCCCCCeEEcChhh---HHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcC
Q 017971 37 TKFKIDGKVIELDESN---FDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL 92 (363)
Q Consensus 37 ~~~~~~~~v~~l~~~~---f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~ 92 (363)
+...+++.|+.+++.+ +-+..+.++|.++.|-+--|++=..-.+.|+++++++.+.
T Consensus 76 G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~ 134 (237)
T PF00837_consen 76 GGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV 134 (237)
T ss_pred CCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh
Confidence 4567789999999887 3444578899999999999999999999999999988754
No 286
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.68 E-value=0.11 Score=42.87 Aligned_cols=41 Identities=27% Similarity=0.442 Sum_probs=32.8
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd 102 (363)
+.++.++.|+...|++|+.+++.+.++.+++.+ ++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~---~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK---DVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC---CceEEEcC
Confidence 568899999999999999999999998877633 35555444
No 287
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=93.23 E-value=0.95 Score=32.87 Aligned_cols=24 Identities=13% Similarity=0.397 Sum_probs=18.0
Q ss_pred chhHHhhcCCCCCCCCCeEEEEeCCCC
Q 017971 313 FADFADTFEANKKSKLPKMVVWDGNEN 339 (363)
Q Consensus 313 ~~~~~~~~gi~~~~~~P~~vi~~~~~~ 339 (363)
...+.+.+++ ...|++++++++|+
T Consensus 71 ~~~l~~~~~i---~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 71 NSELLKKYGI---NGIPTLVLLDPDGK 94 (95)
T ss_dssp HHHHHHHTT----TSSSEEEEEETTSB
T ss_pred HHHHHHHCCC---CcCCEEEEECCCCC
Confidence 3456677777 56899999999986
No 288
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=92.88 E-value=0.19 Score=36.45 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=48.5
Q ss_pred eecCChHHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcCC-
Q 017971 154 SILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPS- 227 (363)
Q Consensus 154 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~- 227 (363)
.++.+.++++. +..+. ..+|+|+.+. ..++.+|..+++.+.|.+... +.. ......+ +..++|++.
T Consensus 2 kef~~~~eL~~-id~~k---r~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G--~~~-~~~~~~~-~~~i~frp~~ 73 (91)
T cd03070 2 KEFRNLDELNN-VDRSK---RNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFG--DVT-KPERPPG-DNIIYFPPGH 73 (91)
T ss_pred ceecCHHHHHh-hCcCC---ceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEec--ccc-ccccCCC-CCeEEECCCC
Confidence 45666555544 33322 5889988432 469999999999988876532 211 1222233 456788876
Q ss_pred CCCcccccCCCC
Q 017971 228 YNEHNIFYGPFD 239 (363)
Q Consensus 228 ~~~~~~~~g~~~ 239 (363)
......|.|.++
T Consensus 74 ~~~~~~y~G~~t 85 (91)
T cd03070 74 NAPDMVYLGSLT 85 (91)
T ss_pred CCCceEEccCCC
Confidence 455578989873
No 289
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=92.87 E-value=0.48 Score=35.70 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=51.2
Q ss_pred cCCCcEEEEEEeCCChhhHHHHHHHHHH---HHHhCCC-cEEEEEeccCc--------------------hhHHhhcCCC
Q 017971 268 DDKRKIVLAIVEDETEEKSQKLVTTLKA---AASANRE-LVFCYVGIKQF--------------------ADFADTFEAN 323 (363)
Q Consensus 268 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~---~a~~~~~-~~f~~vd~~~~--------------------~~~~~~~gi~ 323 (363)
.++++.+++|. +....-.+.+.+.+.. +....++ +.+..++..+. +++.+.+|+
T Consensus 3 ~~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v- 80 (112)
T PF13098_consen 3 GNGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV- 80 (112)
T ss_dssp TTSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC-
Confidence 34567777665 5577777777777664 4444443 66777766542 348888998
Q ss_pred CCCCCCeEEEEeCCCC-eeEEEEEEeehhhh
Q 017971 324 KKSKLPKMVVWDGNEN-YLTVSINVLKTRVC 353 (363)
Q Consensus 324 ~~~~~P~~vi~~~~~~-y~~~~~~~~~~~~~ 353 (363)
...|++++++++|+ .+...|-+..+++.
T Consensus 81 --~gtPt~~~~d~~G~~v~~~~G~~~~~~l~ 109 (112)
T PF13098_consen 81 --NGTPTIVFLDKDGKIVYRIPGYLSPEELL 109 (112)
T ss_dssp ---SSSEEEECTTTSCEEEEEESS--HHHHH
T ss_pred --CccCEEEEEcCCCCEEEEecCCCCHHHHH
Confidence 67899999998876 55666666555543
No 290
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=92.85 E-value=0.5 Score=41.92 Aligned_cols=82 Identities=12% Similarity=0.237 Sum_probs=50.2
Q ss_pred CCCcccCCh-hhHHh-hhcCC-CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCC
Q 017971 252 LPLSVPINQ-DTLNL-LKDDK-RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKL 328 (363)
Q Consensus 252 ~p~~~~lt~-~~~~~-l~~~~-~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~ 328 (363)
+..+.+++. +.+-. +...+ ...+|+.+..........+-..|..+|.+|+.++|+.|.+...+ ....|.. ..+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~---~~L 199 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPD---KNL 199 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-T---TC-
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcc---cCC
Confidence 444556643 44443 32222 23344444455677788888999999999999999999987543 5555655 679
Q ss_pred CeEEEEeCC
Q 017971 329 PKMVVWDGN 337 (363)
Q Consensus 329 P~~vi~~~~ 337 (363)
|++++|...
T Consensus 200 PtllvYk~G 208 (265)
T PF02114_consen 200 PTLLVYKNG 208 (265)
T ss_dssp SEEEEEETT
T ss_pred CEEEEEECC
Confidence 999999964
No 291
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=92.78 E-value=0.66 Score=46.12 Aligned_cols=88 Identities=10% Similarity=0.117 Sum_probs=62.4
Q ss_pred cCCCcEEEEEEeCCChhhHHHHHHHH---HHHHHhCCCcEEEEEeccC----chhHHhhcCCCCCCCCCeEEEEeCCCCe
Q 017971 268 DDKRKIVLAIVEDETEEKSQKLVTTL---KAAASANRELVFCYVGIKQ----FADFADTFEANKKSKLPKMVVWDGNENY 340 (363)
Q Consensus 268 ~~~~~~~i~~~~~~~~~~~~~~~~~l---~~~a~~~~~~~f~~vd~~~----~~~~~~~~gi~~~~~~P~~vi~~~~~~y 340 (363)
..++++++-|..+ -....+.+.... .++.++++++.+..+|.++ ..++++.+++ ...|++++++++|+.
T Consensus 472 ~~gK~VlVdF~A~-WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v---~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 472 GKGKPVMLDLYAD-WCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV---LGLPTILFFDAQGQE 547 (571)
T ss_pred hcCCcEEEEEECC-cCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC---CCCCEEEEECCCCCC
Confidence 3457777777643 455555544432 4566666778888899874 3578899998 679999999988764
Q ss_pred ---eEEEEEEeehhhhhHhhhh
Q 017971 341 ---LTVSINVLKTRVCFFMLTL 359 (363)
Q Consensus 341 ---~~~~~~~~~~~~~~~~~~~ 359 (363)
....+....+++.+++...
T Consensus 548 i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 548 IPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred cccccccCCCCHHHHHHHHHHh
Confidence 5667888888888777654
No 292
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=92.67 E-value=1.2 Score=36.47 Aligned_cols=84 Identities=10% Similarity=0.162 Sum_probs=52.4
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEecc----------------------CchhHHhhcCCCCCC
Q 017971 271 RKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIK----------------------QFADFADTFEANKKS 326 (363)
Q Consensus 271 ~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~----------------------~~~~~~~~~gi~~~~ 326 (363)
+++++.|+ .............+.++++++.+ +.++.++.+ ......+.+|+ .
T Consensus 62 k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v---~ 137 (173)
T PRK03147 62 KGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV---G 137 (173)
T ss_pred CEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC---C
Confidence 45555555 33444455555666666655543 555555432 22456788888 5
Q ss_pred CCCeEEEEeCCCCee-EEEEEEeehhhhhHhhh
Q 017971 327 KLPKMVVWDGNENYL-TVSINVLKTRVCFFMLT 358 (363)
Q Consensus 327 ~~P~~vi~~~~~~y~-~~~~~~~~~~~~~~~~~ 358 (363)
..|..++++++|+.- ...+....+.+..++..
T Consensus 138 ~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 138 PLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred CcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 689999999998644 45777777777777654
No 293
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=0.54 Score=37.92 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=47.1
Q ss_pred cCCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEEC-CCChhhhhHHHHHHHHHHHhhcCC
Q 017971 28 GRGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYA-PWCGHCKRLAPQLDEAAPILAKLK 93 (363)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~-~~C~~C~~~~~~~~~~a~~~~~~~ 93 (363)
..|..+|+...+..++..+.|++- .+++++++||. .+++-|-..+-.|+....+++..+
T Consensus 5 ~~G~~aPdF~Lp~~~g~~v~Lsd~-------~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~ 64 (157)
T COG1225 5 KVGDKAPDFELPDQDGETVSLSDL-------RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG 64 (157)
T ss_pred CCCCcCCCeEeecCCCCEEehHHh-------cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC
Confidence 346778888888888888777765 56789999997 478889899899998888887654
No 294
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=92.50 E-value=0.89 Score=35.57 Aligned_cols=82 Identities=13% Similarity=0.240 Sum_probs=50.4
Q ss_pred CChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC
Q 017971 258 INQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 337 (363)
Q Consensus 258 lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~ 337 (363)
++.+....+....++.-++++...=..........+.++|+..+++.+-++.-++++..++.+--+.....|++++++.+
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 44566666666667777777766677777888999999999988877777766666677766543224678999999987
Q ss_pred CC
Q 017971 338 EN 339 (363)
Q Consensus 338 ~~ 339 (363)
|+
T Consensus 108 ~~ 109 (129)
T PF14595_consen 108 GK 109 (129)
T ss_dssp --
T ss_pred CC
Confidence 53
No 295
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=92.36 E-value=1.3 Score=39.61 Aligned_cols=87 Identities=10% Similarity=0.031 Sum_probs=61.3
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccC---------chhHHhhcCCCCCCCCCeEEEEeCC-C
Q 017971 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ---------FADFADTFEANKKSKLPKMVVWDGN-E 338 (363)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~---------~~~~~~~~gi~~~~~~P~~vi~~~~-~ 338 (363)
+++.++.|+. ......+.....|+++++++.- +..+-+|+.. .....+.+|+ ...|++++++++ |
T Consensus 166 ~k~~Lv~F~A-swCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV---~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 166 KKSGLFFFFK-SDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKI---RTVPAVFLADPDPN 241 (271)
T ss_pred CCeEEEEEEC-CCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCC---CcCCeEEEEECCCC
Confidence 3556666654 4677778889999999999863 4455556532 2457788998 679999999995 6
Q ss_pred CeeEE-EEEEeehhhhhHhhhhh
Q 017971 339 NYLTV-SINVLKTRVCFFMLTLL 360 (363)
Q Consensus 339 ~y~~~-~~~~~~~~~~~~~~~~~ 360 (363)
+.... .|.+..+.+...+..+.
T Consensus 242 ~v~~v~~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 242 QFTPIGFGVMSADELVDRILLAA 264 (271)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHh
Confidence 66544 47778888777776543
No 296
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=92.33 E-value=0.25 Score=46.91 Aligned_cols=54 Identities=13% Similarity=0.286 Sum_probs=38.6
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhh---hh---------CCcCcCCEEEEEeCCE
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA---SK---------QEIDAFPTLKIFMHGI 128 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~---~~---------~~i~~~Pt~~~~~~g~ 128 (363)
++.|..+||++|++....+.+. + +.+-.+|.++++... ++ .|.+++|++++ +|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-------g--i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~ 69 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-------D--IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV 69 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------C--CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence 6789999999998887766652 2 777788888766322 22 36788999965 454
No 297
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=91.55 E-value=1.1 Score=34.28 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=29.8
Q ss_pred hhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhh
Q 017971 314 ADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVC 353 (363)
Q Consensus 314 ~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~ 353 (363)
..+.+.|++ ...|++++++++|..+...+-..+.+|.
T Consensus 83 ~~~~~~~~i---~~~P~~~vid~~gi~~~~~g~~~~~~~~ 119 (123)
T cd03011 83 GVISARWGV---SVTPAIVIVDPGGIVFVTTGVTSEWGLR 119 (123)
T ss_pred cHHHHhCCC---CcccEEEEEcCCCeEEEEeccCCHHHHH
Confidence 468888988 6789999999998777777777777664
No 298
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.26 E-value=2 Score=38.41 Aligned_cols=101 Identities=12% Similarity=0.213 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhcCCCcccCChhhHHhhhc-CCCc-EEEEEEeC----CChhhHHHHHHHHHHHHHhCC------C---cE
Q 017971 240 EEFLEEFIKQNFLPLSVPINQDTLNLLKD-DKRK-IVLAIVED----ETEEKSQKLVTTLKAAASANR------E---LV 304 (363)
Q Consensus 240 ~~~l~~fi~~~~~p~~~~lt~~~~~~l~~-~~~~-~~i~~~~~----~~~~~~~~~~~~l~~~a~~~~------~---~~ 304 (363)
.+++.+-..-.+...+..++.+++..+.. .+++ .+|+++.- ....-..+..++++-+|..++ + +-
T Consensus 27 s~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklF 106 (331)
T KOG2603|consen 27 SNKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLF 106 (331)
T ss_pred HHHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEE
Confidence 34444444434455567777777777544 3344 33333321 122223445577777776533 1 67
Q ss_pred EEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC-CCeeEE
Q 017971 305 FCYVGIKQFADFADTFEANKKSKLPKMVVWDGN-ENYLTV 343 (363)
Q Consensus 305 f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~-~~y~~~ 343 (363)
|+.||.++-++..+.|++ ...|.++++.|+ |+....
T Consensus 107 F~~Vd~~e~p~~Fq~l~l---n~~P~l~~f~P~~~n~~~s 143 (331)
T KOG2603|consen 107 FCMVDYDESPQVFQQLNL---NNVPHLVLFSPAKGNKKRS 143 (331)
T ss_pred EEEEeccccHHHHHHhcc---cCCCeEEEeCCCccccccC
Confidence 999999999999999999 568999999987 544433
No 299
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.01 E-value=1.5 Score=32.81 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=42.8
Q ss_pred hHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch-hhhhh----CCcCcCCEEEEEeC
Q 017971 52 NFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-RLASK----QEIDAFPTLKIFMH 126 (363)
Q Consensus 52 ~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-~l~~~----~~i~~~Pt~~~~~~ 126 (363)
..++++.++ -+|.|.-+||++|+++...|.+ .+....+..+|-..+. ++-+. -+-+..|.+++ +
T Consensus 6 ~v~~~i~~~--~VVifSKs~C~~c~~~k~ll~~-------~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~ 74 (104)
T KOG1752|consen 6 KVRKMISEN--PVVIFSKSSCPYCHRAKELLSD-------LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--G 74 (104)
T ss_pred HHHHHhhcC--CEEEEECCcCchHHHHHHHHHh-------CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--C
Confidence 455666553 3455888999999998777776 2334667777766543 33332 24568898765 5
Q ss_pred CEEE
Q 017971 127 GIPT 130 (363)
Q Consensus 127 g~~~ 130 (363)
|+.+
T Consensus 75 Gk~i 78 (104)
T KOG1752|consen 75 GKFI 78 (104)
T ss_pred CEEE
Confidence 5444
No 300
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=89.71 E-value=7.3 Score=31.41 Aligned_cols=86 Identities=13% Similarity=0.083 Sum_probs=57.1
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccC---ch-------hHH-hhc---CCCCCCCCCeEEEEe
Q 017971 271 RKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ---FA-------DFA-DTF---EANKKSKLPKMVVWD 335 (363)
Q Consensus 271 ~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~---~~-------~~~-~~~---gi~~~~~~P~~vi~~ 335 (363)
+..++.|+. .-....++....+++++++++- +..+-+|... ++ ... ..+ ++ ...|+.+++|
T Consensus 51 ~~~lvnFWA-sWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v---~~iPTt~LID 126 (153)
T TIGR02738 51 DYALVFFYQ-STCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRP---VVTPATFLVN 126 (153)
T ss_pred CCEEEEEEC-CCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCC---CCCCeEEEEe
Confidence 445666664 4677778888899999888752 3333444321 11 122 223 33 5789999999
Q ss_pred CCCC--eeEEEEEEeehhhhhHhhhhh
Q 017971 336 GNEN--YLTVSINVLKTRVCFFMLTLL 360 (363)
Q Consensus 336 ~~~~--y~~~~~~~~~~~~~~~~~~~~ 360 (363)
++|+ +....|.+..++++..+.++|
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 9965 556789999998888877765
No 301
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=89.17 E-value=0.92 Score=34.06 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=53.7
Q ss_pred cccCChhhHHhhhcCCCcEEEEEEeC-CChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971 255 SVPINQDTLNLLKDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (363)
Q Consensus 255 ~~~lt~~~~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v 332 (363)
+++++.+++......+...++++-.+ ....+..+..=++-++.+.+.+ +..+.++......+...||+ ...|+++
T Consensus 11 ~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv---~~~PaLv 87 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGV---RRWPALV 87 (107)
T ss_dssp EEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT----TSSSEEE
T ss_pred CeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCC---ccCCeEE
Confidence 55666777777766655555444322 2233334445577788888888 77888886666789999999 6799999
Q ss_pred EEeCC
Q 017971 333 VWDGN 337 (363)
Q Consensus 333 i~~~~ 337 (363)
+++..
T Consensus 88 f~R~g 92 (107)
T PF07449_consen 88 FFRDG 92 (107)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99876
No 302
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=88.97 E-value=0.52 Score=40.20 Aligned_cols=40 Identities=18% Similarity=0.409 Sum_probs=29.2
Q ss_pred CCeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEe
Q 017971 60 FDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVD 102 (363)
Q Consensus 60 ~~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd 102 (363)
+++-+|+|++-.|+||..+.|.+ ..+.+.+.+ ++.+..+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~---~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE---GTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC---CCeEEEec
Confidence 35779999999999999999876 566655533 35555544
No 303
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.89 E-value=2.5 Score=36.57 Aligned_cols=87 Identities=13% Similarity=0.143 Sum_probs=63.7
Q ss_pred cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEE--
Q 017971 268 DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSI-- 345 (363)
Q Consensus 268 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~-- 345 (363)
..+...+++=+.-.-.-..+.+..++..+|.+|++..|..||.++........|+ ...|+++++....|.-..++
T Consensus 18 ~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV---~amPTFiff~ng~kid~~qGAd 94 (288)
T KOG0908|consen 18 AAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGV---NAMPTFIFFRNGVKIDQIQGAD 94 (288)
T ss_pred ccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCc---ccCceEEEEecCeEeeeecCCC
Confidence 3333343333322344455888999999999999999999999998899999999 67899999998866555554
Q ss_pred -EEeehhhhhHhh
Q 017971 346 -NVLKTRVCFFML 357 (363)
Q Consensus 346 -~~~~~~~~~~~~ 357 (363)
.-+.+.|...++
T Consensus 95 ~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 95 ASGLEEKVAKYAS 107 (288)
T ss_pred HHHHHHHHHHHhc
Confidence 345666665554
No 304
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=88.72 E-value=9.7 Score=29.86 Aligned_cols=75 Identities=24% Similarity=0.343 Sum_probs=48.0
Q ss_pred eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC----cCCEEEEEeCCEEEeecCCCC
Q 017971 62 YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID----AFPTLKIFMHGIPTEYYGPRK 137 (363)
Q Consensus 62 ~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~----~~Pt~~~~~~g~~~~y~g~~~ 137 (363)
.-++.+++|.|+=|+.+....+ ..+ +.+..+..++-..+.++++|. +--|..+ +|.. .+|-..
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk-------~~G--f~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~--vEGHVP 92 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK-------ANG--FEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYY--VEGHVP 92 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH-------hCC--cEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEE--EeccCC
Confidence 4567799999999976654444 122 667777777777788888875 2334332 3322 257777
Q ss_pred HHHHHHHHHhhc
Q 017971 138 AELLVRYLKKFV 149 (363)
Q Consensus 138 ~~~i~~~i~~~~ 149 (363)
++.|..++.+.-
T Consensus 93 a~aI~~ll~~~p 104 (149)
T COG3019 93 AEAIARLLAEKP 104 (149)
T ss_pred HHHHHHHHhCCC
Confidence 777777765543
No 305
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=88.69 E-value=4.8 Score=30.96 Aligned_cols=76 Identities=11% Similarity=0.040 Sum_probs=44.0
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEec-----------------------cCchhHHhhcCCCCCC
Q 017971 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGI-----------------------KQFADFADTFEANKKS 326 (363)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~-----------------------~~~~~~~~~~gi~~~~ 326 (363)
++++++.|+. .......+....+.++++.++ +.++.|+. +....+.+.+|+ .
T Consensus 25 gk~vvv~F~a-~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v---~ 99 (127)
T cd03010 25 GKPYLLNVWA-SWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGV---Y 99 (127)
T ss_pred CCEEEEEEEc-CcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCC---C
Confidence 4566666663 344455555666666655542 44444332 223346666777 5
Q ss_pred CCCeEEEEeCCCC-eeEEEEEEeeh
Q 017971 327 KLPKMVVWDGNEN-YLTVSINVLKT 350 (363)
Q Consensus 327 ~~P~~vi~~~~~~-y~~~~~~~~~~ 350 (363)
..|..++++++|+ -+...|.+..+
T Consensus 100 ~~P~~~~ld~~G~v~~~~~G~~~~~ 124 (127)
T cd03010 100 GVPETFLIDGDGIIRYKHVGPLTPE 124 (127)
T ss_pred CCCeEEEECCCceEEEEEeccCChH
Confidence 6899999999986 44555554443
No 306
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=88.53 E-value=2.3 Score=29.32 Aligned_cols=58 Identities=26% Similarity=0.257 Sum_probs=46.9
Q ss_pred EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (363)
Q Consensus 63 ~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 122 (363)
.|..|-+..-+.+++.-..+.++-+... +.++.+-.+|..++|++++.++|-.+||++
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l--~~~~~LeVIDv~~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELL--GGPYELEVIDVLKQPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhc--CCcEEEEEEEcccCHhHHhhCCEEEechhh
Confidence 4555666666778888888888877654 346999999999999999999999999976
No 307
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=87.54 E-value=4.4 Score=39.64 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=66.0
Q ss_pred eecCChHHHHHHHHhcCCcccEEEeecCChh-HHHHHHHHhhhhh--HHHH----------h--hhcchhhhhhcCCCCC
Q 017971 154 SILNSDAEVSDFVENAGTFFPLFIGFGLDES-VMSNLALKYKKKA--WFAV----------A--KDFSEDTMVLYDFDKV 218 (363)
Q Consensus 154 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~a~~~~~~~--~~~~----------~--~~~~~~~~~~~~~~~~ 218 (363)
..+++..++++.+.+++. .|+++.|+.++= .++...+...... .+.. . .....++.++++.-+.
T Consensus 457 q~~s~~~~L~~~la~~~~-~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKA-KPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCC-CcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 345566689999998875 478999987652 2333222211111 1111 0 0123556889999999
Q ss_pred CeEEEEcCCCCCcccccCCCCHHHHHHHHHhhc
Q 017971 219 PALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF 251 (363)
Q Consensus 219 p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~~ 251 (363)
|++++|.++.+++....|.++.+.+.+++++..
T Consensus 536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 999999988788888999999999999998753
No 308
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=87.52 E-value=4.3 Score=39.70 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=34.3
Q ss_pred chhHHhhcCCCCCCCCCeEEEEeCCCCe-eEEEEEEeehhhhhHhh
Q 017971 313 FADFADTFEANKKSKLPKMVVWDGNENY-LTVSINVLKTRVCFFML 357 (363)
Q Consensus 313 ~~~~~~~~gi~~~~~~P~~vi~~~~~~y-~~~~~~~~~~~~~~~~~ 357 (363)
...+.+.|++ ..+|+.++++++|+. ....|.+..+.+..++.
T Consensus 128 ~~~lak~fgV---~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 128 GGTLAQSLNI---SVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred cHHHHHHcCC---CCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 4567788888 679999999999864 67788888888888876
No 309
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=87.25 E-value=4.6 Score=31.28 Aligned_cols=23 Identities=17% Similarity=0.512 Sum_probs=18.4
Q ss_pred hHHhhcCCCCCCCCCeEEEEeCCCCe
Q 017971 315 DFADTFEANKKSKLPKMVVWDGNENY 340 (363)
Q Consensus 315 ~~~~~~gi~~~~~~P~~vi~~~~~~y 340 (363)
.+.+.+|+ ...|++++++++|+.
T Consensus 90 ~~~~~~~v---~~~P~~~lid~~G~i 112 (131)
T cd03009 90 RLNRTFKI---EGIPTLIILDADGEV 112 (131)
T ss_pred HHHHHcCC---CCCCEEEEECCCCCE
Confidence 45667888 578999999999874
No 310
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=86.43 E-value=5.4 Score=30.16 Aligned_cols=85 Identities=18% Similarity=0.236 Sum_probs=49.0
Q ss_pred hhhcCCCcEEEEEEeCCChhhHHHHHH-HHH--HHHHhCC-CcEEEEEecc--CchhHHhhcCCCCCCCCCeEEEEeC-C
Q 017971 265 LLKDDKRKIVLAIVEDETEEKSQKLVT-TLK--AAASANR-ELVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDG-N 337 (363)
Q Consensus 265 ~l~~~~~~~~i~~~~~~~~~~~~~~~~-~l~--~~a~~~~-~~~f~~vd~~--~~~~~~~~~gi~~~~~~P~~vi~~~-~ 337 (363)
.....++++++.+..+ .....+.+.+ .++ .+.+... ++.+..+|.. +..++++.++. ..+|+++++++ +
T Consensus 12 ~Ak~~~K~llv~~~~~-~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~---~~~P~~~~i~~~~ 87 (114)
T cd02958 12 EAKSEKKWLLVYLQSE-DEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKV---DKYPHIAIIDPRT 87 (114)
T ss_pred HHHhhCceEEEEEecC-CcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCc---cCCCeEEEEeCcc
Confidence 3445566676666544 4434444332 232 2333332 3555556665 35668888887 67999999999 6
Q ss_pred CC-eeEEEEEEeehhhh
Q 017971 338 EN-YLTVSINVLKTRVC 353 (363)
Q Consensus 338 ~~-y~~~~~~~~~~~~~ 353 (363)
|+ -+...|.+..+++.
T Consensus 88 g~~l~~~~G~~~~~~f~ 104 (114)
T cd02958 88 GEVLKVWSGNITPEDLL 104 (114)
T ss_pred CcEeEEEcCCCCHHHHH
Confidence 63 55666665555443
No 311
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=86.39 E-value=3.1 Score=34.39 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=37.3
Q ss_pred CCCeEEEEEECCCC-hhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc
Q 017971 59 SFDYILVDFYAPWC-GHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106 (363)
Q Consensus 59 ~~~~~lv~fy~~~C-~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~ 106 (363)
.+++++|.|.=..| ..|-.....+.++.+.+...+.++.+..|-.+-+
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 67899999888888 7898888999999888887655677777766543
No 312
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=86.37 E-value=2.2 Score=34.54 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=35.1
Q ss_pred CeEEEE-EECCCChhhhhH-HHHHHHHHHHhhcCCCCeEEEEEeCcc---chhhhhhCCc
Q 017971 61 DYILVD-FYAPWCGHCKRL-APQLDEAAPILAKLKEPIVIAKVDADK---YSRLASKQEI 115 (363)
Q Consensus 61 ~~~lv~-fy~~~C~~C~~~-~~~~~~~a~~~~~~~~~v~~~~vd~~~---~~~l~~~~~i 115 (363)
+++++. |...||+.|... .+.+.+..+++.+.+-. .+..+.++. ....++++++
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~-~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVD-EVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCC-EEEEEECCCHHHHHHHHHhhCC
Confidence 455555 445799999998 99999999988765421 244444433 2345556665
No 313
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.07 E-value=1.5 Score=37.06 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=49.4
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCC-C--CCCCCeEEEEeCC
Q 017971 273 IVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEAN-K--KSKLPKMVVWDGN 337 (363)
Q Consensus 273 ~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~-~--~~~~P~~vi~~~~ 337 (363)
.+|-|+. .-+.....+-..+.+++.+|.. ++|+.||.-.+++....|+++ + ..++|+++++.+.
T Consensus 147 WlIeFfa-~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~g 215 (265)
T KOG0914|consen 147 WLIEFFA-CWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKG 215 (265)
T ss_pred EEEEEEe-ecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccc
Confidence 4444443 3455566677888888888875 999999999999999999994 1 1578999999876
No 314
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=86.07 E-value=8.7 Score=26.67 Aligned_cols=65 Identities=12% Similarity=-0.006 Sum_probs=44.0
Q ss_pred CChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEE-eehhhhhH
Q 017971 281 ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINV-LKTRVCFF 355 (363)
Q Consensus 281 ~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~-~~~~~~~~ 355 (363)
......+.....++++++++.. +.|..+|. .+.+..+|+ ...|++++ +|+-. ..+.. ..+++.++
T Consensus 8 ~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~a~~~~v---~~vPti~i---~G~~~-~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 8 TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNEILEAGV---TATPGVAV---DGELV-IMGKIPSKEEIKEI 74 (76)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHcCC---CcCCEEEE---CCEEE-EEeccCCHHHHHHH
Confidence 5667778888899999998876 88888872 234667888 67899999 44333 44433 22555443
No 315
>PF13728 TraF: F plasmid transfer operon protein
Probab=86.02 E-value=6.4 Score=33.79 Aligned_cols=78 Identities=12% Similarity=0.014 Sum_probs=54.1
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEecc---------CchhHHhhcCCCCCCCCCeEEEEeCCC-Ce
Q 017971 272 KIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIK---------QFADFADTFEANKKSKLPKMVVWDGNE-NY 340 (363)
Q Consensus 272 ~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~---------~~~~~~~~~gi~~~~~~P~~vi~~~~~-~y 340 (363)
...++||.+.+..-.+.+..+++.++.+|.= +..+-+|+. ......+.||+ ...|++++.++++ ++
T Consensus 121 ~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v---~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 121 KYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV---KVTPALFLVNPNTKKW 197 (215)
T ss_pred CeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC---CcCCEEEEEECCCCeE
Confidence 3445555566788888999999999999843 555556653 23567788998 5789999999975 65
Q ss_pred eEE-EEEEeehhh
Q 017971 341 LTV-SINVLKTRV 352 (363)
Q Consensus 341 ~~~-~~~~~~~~~ 352 (363)
++. .|-++.+++
T Consensus 198 ~pv~~G~~s~~~L 210 (215)
T PF13728_consen 198 YPVSQGFMSLDEL 210 (215)
T ss_pred EEEeeecCCHHHH
Confidence 554 444444443
No 316
>smart00594 UAS UAS domain.
Probab=86.00 E-value=5 Score=30.85 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=40.9
Q ss_pred HhhhcCCCcEEEEEEeCCChhhHHHHH-HHHH--HHHHhCC-CcEEEEEecc--CchhHHhhcCCCCCCCCCeEEEEeCC
Q 017971 264 NLLKDDKRKIVLAIVEDETEEKSQKLV-TTLK--AAASANR-ELVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDGN 337 (363)
Q Consensus 264 ~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~l~--~~a~~~~-~~~f~~vd~~--~~~~~~~~~gi~~~~~~P~~vi~~~~ 337 (363)
......++++++.+..+ .....+.+. +++. .+.+... ++.+.-+|.. +..++.+.+++ .++|++++++++
T Consensus 21 ~~Ak~~~K~~lv~~~~~-~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~---~~~P~~~~l~~~ 96 (122)
T smart00594 21 QEASRQRRLLWLYLHSQ-DSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKL---DSFPYVAIVDPR 96 (122)
T ss_pred HHHHhhcCCEEEEEeCC-CCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCc---CCCCEEEEEecC
Confidence 33445566777776654 333333333 2222 1222222 4555555654 34568888888 679999999998
Q ss_pred C
Q 017971 338 E 338 (363)
Q Consensus 338 ~ 338 (363)
|
T Consensus 97 ~ 97 (122)
T smart00594 97 T 97 (122)
T ss_pred C
Confidence 5
No 317
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=84.65 E-value=13 Score=27.13 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=47.3
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCE--EEeecCCC
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI--PTEYYGPR 136 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~--~~~y~g~~ 136 (363)
+++..++.|..+. ..|+......+++|.. .+++.+-..+... ..|++.+..+|+ .++|.|-.
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~l----SdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP 81 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASL----SDKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIP 81 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHh----CCceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecC
Confidence 3456677777765 8888887777777754 2336554333211 479999987763 47899977
Q ss_pred CHHHHHHHHH
Q 017971 137 KAELLVRYLK 146 (363)
Q Consensus 137 ~~~~i~~~i~ 146 (363)
.-.++..++.
T Consensus 82 ~GhEf~Slil 91 (94)
T cd02974 82 MGHEFTSLVL 91 (94)
T ss_pred CchhHHHHHH
Confidence 7666666654
No 318
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=83.43 E-value=3.2 Score=33.25 Aligned_cols=51 Identities=12% Similarity=0.170 Sum_probs=34.8
Q ss_pred EEEEECC------CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhh----hhCCc----CcCCEEEE
Q 017971 64 LVDFYAP------WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA----SKQEI----DAFPTLKI 123 (363)
Q Consensus 64 lv~fy~~------~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~----~~~~i----~~~Pt~~~ 123 (363)
+|.|+++ +|++|++....++.. .|.+-.+|.+.++++. +..+- ..+|++++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~---------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF---------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4556666 899998887777643 2778888988765543 33343 67888775
No 319
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=83.19 E-value=9.1 Score=24.08 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=35.7
Q ss_pred ChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHh---hcCCCCCCCCCeEEEEeCC
Q 017971 282 TEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFAD---TFEANKKSKLPKMVVWDGN 337 (363)
Q Consensus 282 ~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~---~~gi~~~~~~P~~vi~~~~ 337 (363)
...........+.+++...+++.+..+|........+ .++. ...|.+++++.+
T Consensus 8 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~P~~~~~~~~ 63 (69)
T cd01659 8 WCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV---GGVPTLVVFGPG 63 (69)
T ss_pred CChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC---ccccEEEEEeCC
Confidence 3344555666666654445569999999987655444 4554 678999999876
No 320
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=82.82 E-value=9.8 Score=29.27 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=48.9
Q ss_pred hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEe
Q 017971 266 LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWD 335 (363)
Q Consensus 266 l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~ 335 (363)
+......++++=|..+.++..-..-+.|.++|...++ .....+|.++-+.+.+.+++ +..|+++.+=
T Consensus 18 I~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l---~~p~tvmfFf 85 (142)
T KOG3414|consen 18 ILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYEL---YDPPTVMFFF 85 (142)
T ss_pred HhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcc---cCCceEEEEE
Confidence 4444455666667676777776777888899999888 44555788888999999999 5567776543
No 321
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=82.47 E-value=11 Score=32.24 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=38.9
Q ss_pred ChhhHHHhHcCCCeEEEEEECCCC-hhhhhHHHHHHHHHHHhh-cCCCCeEEEEEeCccch
Q 017971 49 DESNFDSAISSFDYILVDFYAPWC-GHCKRLAPQLDEAAPILA-KLKEPIVIAKVDADKYS 107 (363)
Q Consensus 49 ~~~~f~~~l~~~~~~lv~fy~~~C-~~C~~~~~~~~~~a~~~~-~~~~~v~~~~vd~~~~~ 107 (363)
+.+.+...--++++++|.|-=+.| .-|-.....+.++.+++. ..+.++.+.-|-++-++
T Consensus 56 ~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPer 116 (207)
T COG1999 56 DGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPER 116 (207)
T ss_pred CCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCC
Confidence 334444433377899999876666 568888888888888777 55556666655555443
No 322
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=81.90 E-value=9.6 Score=33.62 Aligned_cols=78 Identities=12% Similarity=0.041 Sum_probs=55.0
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCc---------hhHHhhcCCCCCCCCCeEEEEeCC-CCee
Q 017971 273 IVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQF---------ADFADTFEANKKSKLPKMVVWDGN-ENYL 341 (363)
Q Consensus 273 ~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~---------~~~~~~~gi~~~~~~P~~vi~~~~-~~y~ 341 (363)
..++||...+..-.+.+..+++.++.+|.= +..+-+|+.-. ...++.+|+ ...|++++.+++ ++++
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v---~~~Pal~Lv~~~t~~~~ 228 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGV---KYFPALYLVNPKSQKMS 228 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCC---ccCceEEEEECCCCcEE
Confidence 444445456777788999999999999875 66667787632 336678888 568999999998 5655
Q ss_pred EE-EEEEeehhhh
Q 017971 342 TV-SINVLKTRVC 353 (363)
Q Consensus 342 ~~-~~~~~~~~~~ 353 (363)
+. .|-++.+++.
T Consensus 229 pv~~G~iS~deL~ 241 (256)
T TIGR02739 229 PLAYGFISQDELK 241 (256)
T ss_pred EEeeccCCHHHHH
Confidence 54 4455555443
No 323
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=79.85 E-value=15 Score=32.19 Aligned_cols=70 Identities=10% Similarity=-0.005 Sum_probs=41.4
Q ss_pred CeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEE
Q 017971 44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (363)
Q Consensus 44 ~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 123 (363)
....++..+ +...+++.++..-+.||+.|...+-.+--+-.++ + ++.+. -+-++ + .-.-..+|++.+
T Consensus 45 ~~~kvsn~d---~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf---G-n~~l~-~~~S~-~----~d~~pn~Ptl~F 111 (249)
T PF06053_consen 45 NFFKVSNQD---LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRF---G-NFSLE-YHYSD-P----YDNYPNTPTLIF 111 (249)
T ss_pred ceeeecCcc---cCCCCeeEEEEEecccCccchhhHHHHHHHHHhc---C-CeeeE-EeecC-c----ccCCCCCCeEEE
Confidence 555555544 3357799999999999999987766555444333 1 13111 11111 1 112357899998
Q ss_pred EeC
Q 017971 124 FMH 126 (363)
Q Consensus 124 ~~~ 126 (363)
...
T Consensus 112 ~~~ 114 (249)
T PF06053_consen 112 NNY 114 (249)
T ss_pred ecC
Confidence 653
No 324
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=79.50 E-value=14 Score=32.46 Aligned_cols=77 Identities=9% Similarity=0.022 Sum_probs=53.1
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCch---------hHHhhcCCCCCCCCCeEEEEeCC-CCee
Q 017971 273 IVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFA---------DFADTFEANKKSKLPKMVVWDGN-ENYL 341 (363)
Q Consensus 273 ~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~---------~~~~~~gi~~~~~~P~~vi~~~~-~~y~ 341 (363)
..++||...+..-.+.+..+++.++++|.= +.-+-+|+.-.+ ...+.+|+ ...|++++.+++ ++++
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v---~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGV---KYFPALMLVDPKSGSVR 221 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCC---cccceEEEEECCCCcEE
Confidence 344444456788888999999999999885 677778884322 24456777 568999999998 5666
Q ss_pred EEE-EEEeehhh
Q 017971 342 TVS-INVLKTRV 352 (363)
Q Consensus 342 ~~~-~~~~~~~~ 352 (363)
+.. |-++.+++
T Consensus 222 pv~~G~iS~deL 233 (248)
T PRK13703 222 PLSYGFITQDDL 233 (248)
T ss_pred EEeeccCCHHHH
Confidence 554 44444443
No 325
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=79.20 E-value=7.8 Score=27.82 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=48.4
Q ss_pred CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971 61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (363)
Q Consensus 61 ~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 122 (363)
.+.|=.|.+..-+.+++.-..+.++-+.... +.+.+-.+|..++|++++.++|-.+||++
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~--g~y~LeVIDv~~qP~lAE~~~IvATPtLI 62 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ--GVYALKVIDVLKNPQLAEEDKILATPTLS 62 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC--CceEEEEEEcccCHhHHhHCCEEEecHHh
Confidence 3455567778888888888888887665443 23889999999999999999999999976
No 326
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=79.12 E-value=18 Score=27.96 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=16.8
Q ss_pred HHhhcCCCCCCCCCeEEEEeCCCCe
Q 017971 316 FADTFEANKKSKLPKMVVWDGNENY 340 (363)
Q Consensus 316 ~~~~~gi~~~~~~P~~vi~~~~~~y 340 (363)
+.+.||+ ...|++++++.+|+-
T Consensus 91 ~~~~~~v---~~iPt~~lid~~G~i 112 (132)
T cd02964 91 LEKQFKV---EGIPTLVVLKPDGDV 112 (132)
T ss_pred HHHHcCC---CCCCEEEEECCCCCE
Confidence 4455777 678999999998863
No 327
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=79.09 E-value=22 Score=28.99 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=29.7
Q ss_pred hHHhhcCCCCCCCCCeEEEEeCCCCeeEEE----------EEEeehhhhhHhhhhhc
Q 017971 315 DFADTFEANKKSKLPKMVVWDGNENYLTVS----------INVLKTRVCFFMLTLLQ 361 (363)
Q Consensus 315 ~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~----------~~~~~~~~~~~~~~~~~ 361 (363)
.+.+.||+ ...|.+++++++|+..... ......++..-+.++|+
T Consensus 100 ~~~~~~~v---~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 100 EVAKAYGA---ACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred HHHHHcCC---CcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 46677777 4579999999998643221 23455677777777764
No 328
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=79.04 E-value=24 Score=29.35 Aligned_cols=43 Identities=12% Similarity=-0.002 Sum_probs=32.0
Q ss_pred HHhhcCCCCCCCCCeEEEEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971 316 FADTFEANKKSKLPKMVVWDGNEN-YLTVSINVLKTRVCFFMLTLLQ 361 (363)
Q Consensus 316 ~~~~~gi~~~~~~P~~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~ 361 (363)
+...+|+ ...|..+++|++|+ .+...+.+..+.++..+..+|+
T Consensus 134 ~~~~~gv---~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 134 LGLDLGV---YGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred HHHhcCC---CcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 4455666 56799999999986 6666678888888777776653
No 329
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=78.55 E-value=12 Score=27.97 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=14.4
Q ss_pred HHhhcCCCCCCCCCeEEEEeCCCC
Q 017971 316 FADTFEANKKSKLPKMVVWDGNEN 339 (363)
Q Consensus 316 ~~~~~gi~~~~~~P~~vi~~~~~~ 339 (363)
+.+.||+ ...|+.+++|++|+
T Consensus 87 ~~~~~~~---~~~P~~~vid~~G~ 107 (114)
T cd02967 87 LGMAYQV---SKLPYAVLLDEAGV 107 (114)
T ss_pred HHhhcCC---CCcCeEEEECCCCe
Confidence 4455555 45788888888875
No 330
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=77.97 E-value=15 Score=27.69 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=41.9
Q ss_pred CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC--CcEEEEEeccCc---------------------hhHHhhcCCCC-
Q 017971 269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQF---------------------ADFADTFEANK- 324 (363)
Q Consensus 269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~f~~vd~~~~---------------------~~~~~~~gi~~- 324 (363)
.++++++.|+..............+++...+++ ++.++.+..+.. ..+.+.||+-.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 446777777765455666566666666665544 355555544321 23555666610
Q ss_pred --CCCCCeEEEEeCCCCe
Q 017971 325 --KSKLPKMVVWDGNENY 340 (363)
Q Consensus 325 --~~~~P~~vi~~~~~~y 340 (363)
....|.+.+++++|+.
T Consensus 104 ~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp TTSEESEEEEEEETTSBE
T ss_pred cCCceEeEEEEECCCCEE
Confidence 1267888888888753
No 331
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=77.89 E-value=30 Score=29.06 Aligned_cols=90 Identities=12% Similarity=0.136 Sum_probs=58.0
Q ss_pred HHHHHHHhhcCCCcccCChhhHH-hhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhh
Q 017971 242 FLEEFIKQNFLPLSVPINQDTLN-LLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADT 319 (363)
Q Consensus 242 ~l~~fi~~~~~p~~~~lt~~~~~-~l~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~ 319 (363)
+++.-..++++..+.+++...+. ... .+....+++-+..+.-....-+...|+.+|.+|+.++|+-+-+.+. + ..
T Consensus 80 E~r~~~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c--I-pN 156 (240)
T KOG3170|consen 80 EWRATAEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC--I-PN 156 (240)
T ss_pred HHHHHHHHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc--c-CC
Confidence 44445566678888887754333 233 2323333333445567777778899999999999999999877641 1 11
Q ss_pred cCCCCCCCCCeEEEEeCC
Q 017971 320 FEANKKSKLPKMVVWDGN 337 (363)
Q Consensus 320 ~gi~~~~~~P~~vi~~~~ 337 (363)
| +...+|++.||-..
T Consensus 157 Y---Pe~nlPTl~VY~~G 171 (240)
T KOG3170|consen 157 Y---PESNLPTLLVYHHG 171 (240)
T ss_pred C---cccCCCeEEEeecc
Confidence 1 34678999887654
No 332
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=76.72 E-value=16 Score=29.38 Aligned_cols=80 Identities=16% Similarity=0.302 Sum_probs=49.3
Q ss_pred cCCCcccCCh---hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCC
Q 017971 251 FLPLSVPINQ---DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKS 326 (363)
Q Consensus 251 ~~p~~~~lt~---~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~ 326 (363)
.-|..+.+|+ +.++.+...+.+.-++|++.+.+... +..-++ ..+.+ +..-+-|.. -.++...|++ .
T Consensus 44 wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~--~~~y~~---~~~~~W~~iPf~d~~-~~~l~~ky~v---~ 114 (157)
T KOG2501|consen 44 WCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEES--LDEYML---EHHGDWLAIPFGDDL-IQKLSEKYEV---K 114 (157)
T ss_pred ECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHH--HHHHHH---hcCCCeEEecCCCHH-HHHHHHhccc---C
Confidence 4456777775 56777888888999999876554432 222221 22222 222222222 3467788888 6
Q ss_pred CCCeEEEEeCCCC
Q 017971 327 KLPKMVVWDGNEN 339 (363)
Q Consensus 327 ~~P~~vi~~~~~~ 339 (363)
..|++++.+++|.
T Consensus 115 ~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 115 GIPALVILKPDGT 127 (157)
T ss_pred cCceeEEecCCCC
Confidence 7899999999874
No 333
>PRK09301 circadian clock protein KaiB; Provisional
Probab=76.42 E-value=9.8 Score=28.24 Aligned_cols=60 Identities=27% Similarity=0.223 Sum_probs=49.6
Q ss_pred CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971 61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (363)
Q Consensus 61 ~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 122 (363)
.+.|=.|.+..-+..++.-..+.++-+.... +.+.+-.||..++|++++.++|-.+||++
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l~--g~y~LeVIDv~~qPelAE~~~IvATPTLI 65 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEFK--GVYALKVIDVLKNPQLAEEDKILATPTLA 65 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC--CceEEEEEEcccCHhHHhHCCeEEecHHh
Confidence 4667778888888888888888888665443 23889999999999999999999999966
No 334
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=75.68 E-value=24 Score=24.41 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=37.6
Q ss_pred CChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971 281 ETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (363)
Q Consensus 281 ~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi 333 (363)
.+..........+++++..+. +..-.+|..+++++ ..+|+ ...|+++|
T Consensus 8 ~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv---~~vPalvI 55 (76)
T PF13192_consen 8 PGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGV---MSVPALVI 55 (76)
T ss_dssp SSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT----SSSSEEEE
T ss_pred CCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCC---CCCCEEEE
Confidence 346677788888999888884 88888898777777 88999 67899965
No 335
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=75.38 E-value=2.8 Score=31.31 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=22.7
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc
Q 017971 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106 (363)
Q Consensus 65 v~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~ 106 (363)
..|+.++|+.|++....+++. + +.+-.+|..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~--i~~~~idi~~~ 34 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-------G--IEYEFIDYLKE 34 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------C--CCcEEEeeccC
Confidence 568899999999887665542 1 55666665543
No 336
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=75.04 E-value=9.8 Score=28.91 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC
Q 017971 77 RLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH 126 (363)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 126 (363)
.+.+.+..+.+.+.+.... .+..=+|.+.++|+|...|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~-----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC-----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC-----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 6777777777666544322 22334699999999999999999877
No 337
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=73.05 E-value=28 Score=24.00 Aligned_cols=71 Identities=18% Similarity=0.130 Sum_probs=38.9
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc----hhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHH
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAE 139 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~ 139 (363)
+..++.++|+.|++..-.+.+. + +.+-.++.... +++.+.-+-..+|++..-.+|.. -....
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-------g--i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~-----l~es~ 67 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-------E--LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ-----MFESA 67 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-------C--CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE-----EEcHH
Confidence 3457778999998776555432 2 33444554432 23333334467898854222321 13467
Q ss_pred HHHHHHHhh
Q 017971 140 LLVRYLKKF 148 (363)
Q Consensus 140 ~i~~~i~~~ 148 (363)
.|.+|+.+.
T Consensus 68 ~I~~yL~~~ 76 (77)
T cd03041 68 DIVKYLFKT 76 (77)
T ss_pred HHHHHHHHh
Confidence 788877654
No 338
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.89 E-value=9.7 Score=38.04 Aligned_cols=82 Identities=24% Similarity=0.298 Sum_probs=62.5
Q ss_pred EEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHH-H--HHHHHHhhcCCCCeEEEEEeCccchhhhhhCC--------
Q 017971 46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQ-L--DEAAPILAKLKEPIVIAKVDADKYSRLASKQE-------- 114 (363)
Q Consensus 46 ~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~-~--~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~-------- 114 (363)
....++.|+++-.+++|+|+-.-..||+-|+-.+.+ | .++|+.++.. +.-.+||-++-|++-+.|.
T Consensus 29 ~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~---FV~IKVDREERPDvD~~Ym~~~q~~tG 105 (667)
T COG1331 29 YPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN---FVPVKVDREERPDVDSLYMNASQAITG 105 (667)
T ss_pred cccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC---ceeeeEChhhccCHHHHHHHHHHHhcc
Confidence 456789999999999999999999999999876554 3 3467777654 8888999998887665553
Q ss_pred cCcCCEEEEEe-CCEEE
Q 017971 115 IDAFPTLKIFM-HGIPT 130 (363)
Q Consensus 115 i~~~Pt~~~~~-~g~~~ 130 (363)
--|+|-=++.. +|+++
T Consensus 106 ~GGWPLtVfLTPd~kPF 122 (667)
T COG1331 106 QGGWPLTVFLTPDGKPF 122 (667)
T ss_pred CCCCceeEEECCCCcee
Confidence 45889766654 56654
No 339
>PHA02125 thioredoxin-like protein
Probab=72.70 E-value=21 Score=24.57 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=35.1
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971 277 IVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (363)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v 332 (363)
.|........+.+...|.+++ +.++-+|.+....+.+.+++ ...|+++
T Consensus 4 ~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v---~~~PT~~ 51 (75)
T PHA02125 4 LFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHI---RSLPTLV 51 (75)
T ss_pred EEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCC---ceeCeEE
Confidence 333445566666667776543 56788898888899999999 6889987
No 340
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=72.27 E-value=32 Score=26.30 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=15.8
Q ss_pred HHhhcCCCCCCCCCeEEEEeCCCCe
Q 017971 316 FADTFEANKKSKLPKMVVWDGNENY 340 (363)
Q Consensus 316 ~~~~~gi~~~~~~P~~vi~~~~~~y 340 (363)
+.+.||+ ...|..+++|++|+.
T Consensus 97 ~~~~~~v---~~~P~~~vid~~G~v 118 (126)
T cd03012 97 TWRAYGN---QYWPALYLIDPTGNV 118 (126)
T ss_pred HHHHhCC---CcCCeEEEECCCCcE
Confidence 4455665 467999999988853
No 341
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=72.21 E-value=15 Score=28.70 Aligned_cols=65 Identities=9% Similarity=0.114 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCE------------EEeecCCCCHHHHHHHH
Q 017971 78 LAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI------------PTEYYGPRKAELLVRYL 145 (363)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~------------~~~y~g~~~~~~i~~~i 145 (363)
+.+....+.+...... . .+..=+|.+.++|+|...|++++-+++. ...-.|..+.+.-.+.+
T Consensus 38 ~~~T~~~i~~L~~~~~-~-----~~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~i 111 (130)
T TIGR02742 38 FKATATRIQSLIKDGG-K-----SGVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKM 111 (130)
T ss_pred HHHHHHHHHHHHhcCC-C-----CcEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHH
Confidence 4455555554443322 1 2222359999999999999999998763 22345777666555555
Q ss_pred Hhh
Q 017971 146 KKF 148 (363)
Q Consensus 146 ~~~ 148 (363)
.+.
T Consensus 112 a~~ 114 (130)
T TIGR02742 112 AQD 114 (130)
T ss_pred HHh
Confidence 543
No 342
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=71.79 E-value=16 Score=25.29 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=40.4
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCCCCCeEEEE
Q 017971 275 LAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVW 334 (363)
Q Consensus 275 i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~ 334 (363)
.+|+ ...+.........++++.+.+.+ +.+=.+|..++++.+....+ .-.|+++=.
T Consensus 5 ~Lyv-~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~i---vAtPtLvk~ 62 (72)
T cd02978 5 RLYV-AGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKI---VATPTLVKV 62 (72)
T ss_pred EEEE-CCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCE---EEechhhhc
Confidence 3444 44545566667778888887654 88889999999999999888 556776533
No 343
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=71.02 E-value=2.8 Score=40.74 Aligned_cols=49 Identities=16% Similarity=0.214 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHh---CCC-cEEEEEeccC--chhHHhhcCCCCCCCCCeEEEEeCC
Q 017971 286 SQKLVTTLKAAASA---NRE-LVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWDGN 337 (363)
Q Consensus 286 ~~~~~~~l~~~a~~---~~~-~~f~~vd~~~--~~~~~~~~gi~~~~~~P~~vi~~~~ 337 (363)
..++...++++|+. ++. +..+.|||.+ +..+|+.|++ ..+|.+.++.++
T Consensus 72 Cr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V---~~~Ptlryf~~~ 126 (606)
T KOG1731|consen 72 CRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSV---SGYPTLRYFPPD 126 (606)
T ss_pred hhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCC---CCCceeeecCCc
Confidence 35666777777775 444 8888899975 6789999999 789999999988
No 344
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=69.84 E-value=27 Score=37.75 Aligned_cols=89 Identities=11% Similarity=0.054 Sum_probs=62.0
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEe-----cc----------------------CchhHHhhc
Q 017971 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVG-----IK----------------------QFADFADTF 320 (363)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd-----~~----------------------~~~~~~~~~ 320 (363)
++++++-|..+ -..........|+++++++++ +.++-|. .. ....+.+.|
T Consensus 420 GK~vll~FWAs-WC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 420 GKVVILDFWTY-CCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCEEEEEEECC-cChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 56677766643 556666778888888888875 6665552 21 112344566
Q ss_pred CCCCCCCCCeEEEEeCCCC-eeEEEEEEeehhhhhHhhhhhcC
Q 017971 321 EANKKSKLPKMVVWDGNEN-YLTVSINVLKTRVCFFMLTLLQF 362 (363)
Q Consensus 321 gi~~~~~~P~~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~~ 362 (363)
++ ...|++++++++|+ .....++...+.+..++...|.+
T Consensus 499 ~V---~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~ 538 (1057)
T PLN02919 499 GV---SSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQY 538 (1057)
T ss_pred CC---CccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHh
Confidence 66 57899999999985 35577888899999998887653
No 345
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=69.35 E-value=56 Score=26.07 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=19.8
Q ss_pred hHHhhcCCCCCCCCCeEEEEeCCCCeeEE
Q 017971 315 DFADTFEANKKSKLPKMVVWDGNENYLTV 343 (363)
Q Consensus 315 ~~~~~~gi~~~~~~P~~vi~~~~~~y~~~ 343 (363)
.+.+.||+ ..+|+.++++++|+.-.-
T Consensus 103 ~l~~~y~v---~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 103 ELEAQFSV---EELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHcCC---CCCCEEEEECCCCcEEee
Confidence 46667777 578999999999875443
No 346
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=67.37 E-value=5.6 Score=29.78 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=15.6
Q ss_pred EEEECCCChhhhhHHHHHHH
Q 017971 65 VDFYAPWCGHCKRLAPQLDE 84 (363)
Q Consensus 65 v~fy~~~C~~C~~~~~~~~~ 84 (363)
..|+.|+|+.|++....+++
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 56889999999987655553
No 347
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=67.16 E-value=3.7 Score=34.03 Aligned_cols=35 Identities=31% Similarity=0.313 Sum_probs=16.1
Q ss_pred chhhhhhCCcCcCCEEEEEe---CCEEEeecCCCCHHH
Q 017971 106 YSRLASKQEIDAFPTLKIFM---HGIPTEYYGPRKAEL 140 (363)
Q Consensus 106 ~~~l~~~~~i~~~Pt~~~~~---~g~~~~y~g~~~~~~ 140 (363)
+..++++++|+++||+++|. ++..+...|..+.+.
T Consensus 136 D~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~ 173 (176)
T PF13743_consen 136 DQQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYEV 173 (176)
T ss_dssp HHHHHHHTT-SSSSEEEEE-------------------
T ss_pred HHHHHHHcCCCCCCEEEEEecccccccccccccccccc
Confidence 35689999999999999998 233444455554443
No 348
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=64.75 E-value=39 Score=22.68 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=31.7
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-hhhhhhCCcCcCCEEEE
Q 017971 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-SRLASKQEIDAFPTLKI 123 (363)
Q Consensus 65 v~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~ 123 (363)
+.|+.+||++|++..-.+.+. +-.+....+|.... +++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-------gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-------GITVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-------CCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 457789999998875544432 22355556665432 44545455678899853
No 349
>PHA03075 glutaredoxin-like protein; Provisional
Probab=64.67 E-value=34 Score=25.92 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=26.3
Q ss_pred CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe
Q 017971 61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102 (363)
Q Consensus 61 ~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd 102 (363)
+.++|.|--|.|+-|+-....+.++..+ ..+.+||
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~lede-------Y~ilrVN 36 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDE-------YDILRVN 36 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcc-------ccEEEEE
Confidence 4689999999999998888777655533 4455666
No 350
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=64.30 E-value=58 Score=24.37 Aligned_cols=76 Identities=14% Similarity=0.287 Sum_probs=46.1
Q ss_pred hhHHhhhcC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCc----hhHHhhcCCCCCCCCCeEEEE
Q 017971 261 DTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQF----ADFADTFEANKKSKLPKMVVW 334 (363)
Q Consensus 261 ~~~~~l~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~----~~~~~~~gi~~~~~~P~~vi~ 334 (363)
+.++.+... ....+++|=.+....-....++.+++.+....+ +.+.++|.-++ ..+...||+ .=+.|.++++
T Consensus 8 eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V--~HeSPQ~ili 85 (105)
T PF11009_consen 8 EQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGV--KHESPQVILI 85 (105)
T ss_dssp HHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT------SSEEEEE
T ss_pred HHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCC--CcCCCcEEEE
Confidence 444543332 333344454555677777777888888887776 99999999765 558899999 2457999998
Q ss_pred eCCC
Q 017971 335 DGNE 338 (363)
Q Consensus 335 ~~~~ 338 (363)
+.+.
T Consensus 86 ~~g~ 89 (105)
T PF11009_consen 86 KNGK 89 (105)
T ss_dssp ETTE
T ss_pred ECCE
Confidence 8774
No 351
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=63.84 E-value=44 Score=22.78 Aligned_cols=74 Identities=15% Similarity=0.281 Sum_probs=40.2
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEe--CCEEEeecCCCCHHHH
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM--HGIPTEYYGPRKAELL 141 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~--~g~~~~y~g~~~~~~i 141 (363)
+..|+.+.|+.|++..-.+... +-.+....+|-...+++ +.-+-..+|++..=. +|.. -.....|
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-------gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~-----l~eS~~I 68 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-------GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ-----LVDSSVI 68 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-------CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE-----EEcHHHH
Confidence 3467889999999887444432 21233333332222233 333456788886421 1221 1356788
Q ss_pred HHHHHhhcC
Q 017971 142 VRYLKKFVA 150 (363)
Q Consensus 142 ~~~i~~~~~ 150 (363)
.+|+.+.++
T Consensus 69 ~~yL~~~~~ 77 (77)
T cd03040 69 ISTLKTYLG 77 (77)
T ss_pred HHHHHHHcC
Confidence 888877653
No 352
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=63.54 E-value=9.2 Score=29.92 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=22.5
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~ 106 (363)
+..|+.++|+.|++....+++ .+ +.+-.+|..++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-------~g--i~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-------HD--IPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cC--CCcEEeeccCC
Confidence 457889999999987655443 22 55666665443
No 353
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=62.84 E-value=89 Score=25.99 Aligned_cols=87 Identities=14% Similarity=0.014 Sum_probs=58.4
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEecc---Cch--------hHHhhcCCCCCCCCCeEEEEeCCCCe-
Q 017971 274 VLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIK---QFA--------DFADTFEANKKSKLPKMVVWDGNENY- 340 (363)
Q Consensus 274 ~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~---~~~--------~~~~~~gi~~~~~~P~~vi~~~~~~y- 340 (363)
++.|+. ....-.++....|++++++++- +.-+-+|.. .|+ .....||. .....|+.+++|++|+.
T Consensus 73 lV~Fwa-swCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~-~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQ-GHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPN-IPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEEC-CCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCC-CCCCCCeEEEEeCCCcEE
Confidence 444553 4677778888889999888753 222223433 111 13445663 12578999999999975
Q ss_pred -eEEEEEEeehhhhhHhhhhhcC
Q 017971 341 -LTVSINVLKTRVCFFMLTLLQF 362 (363)
Q Consensus 341 -~~~~~~~~~~~~~~~~~~~~~~ 362 (363)
....|.+....++.-+..+||.
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHhh
Confidence 4689999888888888887763
No 354
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=62.66 E-value=9.3 Score=29.14 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=23.4
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch
Q 017971 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS 107 (363)
Q Consensus 65 v~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~ 107 (363)
..|+.++|+.|++....+++ . ++.+-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~--~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------N--GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------c--CCceEEEecCCCh
Confidence 46889999999988766654 1 2566667765543
No 355
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=62.04 E-value=11 Score=31.18 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=29.9
Q ss_pred cchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHH
Q 017971 105 KYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLK 146 (363)
Q Consensus 105 ~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~ 146 (363)
++...+.++||.|+|++++ +|+ ..+.|....+.+.+.++
T Consensus 155 ~~~~~a~~~gv~GvP~~vv--~g~-~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 155 EDTAEARQLGVFGVPTFVV--NGK-YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHHHHTTCSSSSEEEE--TTT-EEEESCSSHHHHHHHH-
T ss_pred HHHHHHHHcCCcccCEEEE--CCE-EEEECCCCHHHHHHHhC
Confidence 3455678899999999999 665 56789888888877653
No 356
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=61.82 E-value=36 Score=27.75 Aligned_cols=93 Identities=13% Similarity=0.154 Sum_probs=50.8
Q ss_pred HHHHHHhhcCCCcc--cCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHH-HHHH--HHHHhCC-CcEEEEEeccCchhH
Q 017971 243 LEEFIKQNFLPLSV--PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLV-TTLK--AAASANR-ELVFCYVGIKQFADF 316 (363)
Q Consensus 243 l~~fi~~~~~p~~~--~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~l~--~~a~~~~-~~~f~~vd~~~~~~~ 316 (363)
-.-++.+|....+. ..+.+.++.....++|+++.+..+ .....+... +.++ ++|.... ++.-+.||.++.+.+
T Consensus 8 ~Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~-~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdi 86 (163)
T PF03190_consen 8 KSPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYS-WCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDI 86 (163)
T ss_dssp --HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-T-T-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHH
T ss_pred CCHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEec-CCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccH
Confidence 34577777666654 444577888888888888777644 444443322 1222 3444332 377788999987776
Q ss_pred Hhhc--------CCCCCCCCCeEEEEeCCCC
Q 017971 317 ADTF--------EANKKSKLPKMVVWDGNEN 339 (363)
Q Consensus 317 ~~~~--------gi~~~~~~P~~vi~~~~~~ 339 (363)
-+.+ |- +++|..++++++|+
T Consensus 87 d~~y~~~~~~~~~~---gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 87 DKIYMNAVQAMSGS---GGWPLTVFLTPDGK 114 (163)
T ss_dssp HHHHHHHHHHHHS------SSEEEEE-TTS-
T ss_pred HHHHHHHHHHhcCC---CCCCceEEECCCCC
Confidence 5554 33 68999999999974
No 357
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=61.16 E-value=68 Score=24.08 Aligned_cols=102 Identities=18% Similarity=0.098 Sum_probs=72.9
Q ss_pred EEcChhhHHHhH--cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhh----hCCcC-cC
Q 017971 46 IELDESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS----KQEID-AF 118 (363)
Q Consensus 46 ~~l~~~~f~~~l--~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~----~~~i~-~~ 118 (363)
..|...++-..= .-++..++.|--+..+.-.+|.+.+.++|+... .+++..+.-||=++-|-+.. .|+|. .-
T Consensus 4 rkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt-~np~LsiIWIDPD~FPllv~yWektF~IDl~~ 82 (120)
T cd03074 4 RKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNT-DNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFR 82 (120)
T ss_pred hhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcC-cCCCceEEEECCccCchhhHHHHhhcCcccCC
Confidence 345555554443 223688888999999999999999999999876 46789999999988877654 45664 45
Q ss_pred CEEEEEeC----CEEEeecC---CCCHHHHHHHHHhh
Q 017971 119 PTLKIFMH----GIPTEYYG---PRKAELLVRYLKKF 148 (363)
Q Consensus 119 Pt~~~~~~----g~~~~y~g---~~~~~~i~~~i~~~ 148 (363)
|++-+..- +.-.+-.+ ..++++|.+|+...
T Consensus 83 PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 83 PQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred CceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 99888752 22233333 36788999998754
No 358
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=60.68 E-value=1.2e+02 Score=26.93 Aligned_cols=66 Identities=9% Similarity=0.122 Sum_probs=46.3
Q ss_pred cCChhhHHhhhcCCCcEEEEEEeCC-----ChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhH----HhhcCC
Q 017971 257 PINQDTLNLLKDDKRKIVLAIVEDE-----TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADF----ADTFEA 322 (363)
Q Consensus 257 ~lt~~~~~~l~~~~~~~~i~~~~~~-----~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~----~~~~gi 322 (363)
.++..+...+..-+.|+-|.++.+. .......+.+.|++.+...++ +.+-++|....+.. ++.+|+
T Consensus 11 sLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi 86 (271)
T PF09822_consen 11 SLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGI 86 (271)
T ss_pred cCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCC
Confidence 4566677777777788888887665 233446667777787777774 99999999554444 444888
No 359
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=60.54 E-value=56 Score=25.53 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=19.7
Q ss_pred hhHHhhcCCC-CCC-----CCCeEEEEeCCCCee
Q 017971 314 ADFADTFEAN-KKS-----KLPKMVVWDGNENYL 341 (363)
Q Consensus 314 ~~~~~~~gi~-~~~-----~~P~~vi~~~~~~y~ 341 (363)
..+.+.+|+. ... ..|.+++++++|+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~ 128 (146)
T PF08534_consen 95 GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVV 128 (146)
T ss_dssp SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEE
T ss_pred HHHHHHhCCccccccccCCeecEEEEEECCCEEE
Confidence 3577888861 011 789999999999643
No 360
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=60.20 E-value=8.2 Score=27.43 Aligned_cols=53 Identities=21% Similarity=0.136 Sum_probs=41.4
Q ss_pred ECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971 68 YAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (363)
Q Consensus 68 y~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 122 (363)
-+..-..++........+.+... +.++.+-.||..++|++++.++|-.+||++
T Consensus 4 V~g~~~~s~~a~~~l~~l~~~~l--~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 4 VAGRTPSSERAIENLRRLCEEYL--GGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp ESSBHHHHHHHHHHHHHHHHCHC--TTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred ECCCChHHHHHHHHHHHHHHhhC--CCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 34444556777777777776533 446999999999999999999999999965
No 361
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=60.18 E-value=9.1 Score=28.90 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=22.7
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc
Q 017971 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106 (363)
Q Consensus 65 v~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~ 106 (363)
..|+.++|+.|++....+++ .+ +.|-.+|..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~--i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HG--VDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cC--CceEEecccCC
Confidence 46889999999988765554 12 66666675544
No 362
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=59.11 E-value=97 Score=26.23 Aligned_cols=105 Identities=10% Similarity=0.109 Sum_probs=61.5
Q ss_pred hcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhcCC--CcccC--C------hhhHHhhh---cCCCcEEEEEE
Q 017971 212 LYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLP--LSVPI--N------QDTLNLLK---DDKRKIVLAIV 278 (363)
Q Consensus 212 ~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p--~~~~l--t------~~~~~~l~---~~~~~~~i~~~ 278 (363)
+++-.+.=.+.+|- ....-.++.+.++...||...... .+..+ | .+....+. ....|.+++|+
T Consensus 36 ~~DdDG~i~v~~Fs----~~~~~~~~vt~~~~~~~v~~~~~~~~~~~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFi 111 (200)
T PF10138_consen 36 QFDDDGEIDVWFFS----TEFDRLPDVTLDNYEGYVDELHAGLPDWGRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFI 111 (200)
T ss_pred hcCCCCceEEEEeC----CCCCcCCCcCHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEE
Confidence 44444433345553 233334678999999999876432 11211 1 12333344 44469999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcC
Q 017971 279 EDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFE 321 (363)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~g 321 (363)
.|.......+..+.|.+.+..-=-++|+-+...+| .+|+.+.
T Consensus 112 TDG~~~~~~~~~~~i~~as~~pifwqFVgiG~~~f-~fL~kLD 153 (200)
T PF10138_consen 112 TDGGPDDRRAIEKLIREASDEPIFWQFVGIGDSNF-GFLEKLD 153 (200)
T ss_pred ecCCccchHHHHHHHHhccCCCeeEEEEEecCCcc-hHHHHhh
Confidence 88777777777777777522111177877766664 4777664
No 363
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.90 E-value=14 Score=25.55 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=33.3
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc--------------hh--hhhhCCcCcCCEEEE
Q 017971 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY--------------SR--LASKQEIDAFPTLKI 123 (363)
Q Consensus 65 v~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--------------~~--l~~~~~i~~~Pt~~~ 123 (363)
+.|++.-|+.|..+..+++++. +.+-.|+.+.. ++ -.+..|--|+|.+.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~---------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~ 70 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN---------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT 70 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC---------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe
Confidence 6899999999988888777653 33444554432 11 244556678888775
No 364
>PRK12559 transcriptional regulator Spx; Provisional
Probab=58.81 E-value=13 Score=29.00 Aligned_cols=20 Identities=20% Similarity=0.557 Sum_probs=15.4
Q ss_pred EEEEECCCChhhhhHHHHHH
Q 017971 64 LVDFYAPWCGHCKRLAPQLD 83 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~ 83 (363)
+..|+.|+|+.|++...-++
T Consensus 2 i~iY~~~~C~~crkA~~~L~ 21 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLE 21 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH
Confidence 46788999999998764444
No 365
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=58.77 E-value=54 Score=22.83 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=41.9
Q ss_pred hHHhhhcCCCcEEEEEEeCCChhhHHHHHHHH---HHHHH-hCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeC
Q 017971 262 TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTL---KAAAS-ANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (363)
Q Consensus 262 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l---~~~a~-~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~ 336 (363)
.+......++|+++.|. .+-....+.+.+.+ .++.+ -.+++.++.+|.++...-....+ ...|+++++++
T Consensus 9 al~~A~~~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~----~~~P~~~~ldp 82 (82)
T PF13899_consen 9 ALAEAKKEGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR----QGYPTFFFLDP 82 (82)
T ss_dssp HHHHHHHHTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH----CSSSEEEEEET
T ss_pred HHHHHHHcCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC----ccCCEEEEeCC
Confidence 34445666788888775 44566665555443 22333 22458999999976444332222 23799999986
No 366
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=58.31 E-value=18 Score=30.29 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=33.3
Q ss_pred hhhhhhCCcCcCCEEEEEeCCEEEee-cC--CCCHHHHHHHHHhhc
Q 017971 107 SRLASKQEIDAFPTLKIFMHGIPTEY-YG--PRKAELLVRYLKKFV 149 (363)
Q Consensus 107 ~~l~~~~~i~~~Pt~~~~~~g~~~~y-~g--~~~~~~i~~~i~~~~ 149 (363)
..+++++++.++||+.+-++|+...- .| -.+.+.+..++...+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 56899999999999999999987653 44 346678888876654
No 367
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=57.96 E-value=97 Score=29.30 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=61.3
Q ss_pred cCCCeEEEEEECCCChhhhhHH-HHHHHHH-HHhhcCCCCeEEEEEeCc--cchhhhhhCCcCcCCEEEEEe-CCEEEe-
Q 017971 58 SSFDYILVDFYAPWCGHCKRLA-PQLDEAA-PILAKLKEPIVIAKVDAD--KYSRLASKQEIDAFPTLKIFM-HGIPTE- 131 (363)
Q Consensus 58 ~~~~~~lv~fy~~~C~~C~~~~-~~~~~~a-~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~-~g~~~~- 131 (363)
+.++.+||-|-+......+++. -.|.... .... ...+.-.+|+.. ....+.+-|-+..+|.+++.. +|.+..
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~l--s~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLev 93 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSL--SKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEV 93 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhh--hcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEE
Confidence 5567888889999988898887 3444432 2211 123555566543 234556667889999999985 688886
Q ss_pred ecCCCCHHHHHHHHHhhc
Q 017971 132 YYGPRKAELLVRYLKKFV 149 (363)
Q Consensus 132 y~g~~~~~~i~~~i~~~~ 149 (363)
-.|-.++++|..-|.+..
T Consensus 94 itg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 94 ITGFVTADELASSIEKVW 111 (506)
T ss_pred eeccccHHHHHHHHHHHH
Confidence 578888888887776553
No 368
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=57.05 E-value=53 Score=30.43 Aligned_cols=93 Identities=17% Similarity=0.294 Sum_probs=65.1
Q ss_pred cChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC
Q 017971 48 LDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH 126 (363)
Q Consensus 48 l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 126 (363)
++.+-.+++- -++.+-|=.|++-.|..| |...++-+.+.-.++++.-..+|..-..+-.+.-+|-+.||+++ +
T Consensus 103 ~~q~vieqik~i~g~~~FETy~SltC~nC----PDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--n 176 (520)
T COG3634 103 EDQDVIEQIKAIDGDFHFETYFSLTCHNC----PDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--N 176 (520)
T ss_pred hhHHHHHHHHhcCCceeEEEEEEeeccCC----hHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE--c
Confidence 3444455443 345678888999999999 66666666655567789999999877777677779999999875 5
Q ss_pred CEEEeecCCCCHHHHHHHHHh
Q 017971 127 GIPTEYYGPRKAELLVRYLKK 147 (363)
Q Consensus 127 g~~~~y~g~~~~~~i~~~i~~ 147 (363)
|+.. -.|..+.++|..-+..
T Consensus 177 Ge~f-g~GRmtleeilaki~~ 196 (520)
T COG3634 177 GEEF-GQGRMTLEEILAKIDT 196 (520)
T ss_pred chhh-cccceeHHHHHHHhcC
Confidence 5322 1567777777765543
No 369
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=56.80 E-value=73 Score=24.24 Aligned_cols=70 Identities=10% Similarity=0.156 Sum_probs=37.1
Q ss_pred hhhcCCCcEEEEEEeCCChhhHHHHH-HHHH--HHHHhC-CCcEEEEEeccC--chhHHhhcCCCCCCCCCeEEEEeCCC
Q 017971 265 LLKDDKRKIVLAIVEDETEEKSQKLV-TTLK--AAASAN-RELVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWDGNE 338 (363)
Q Consensus 265 ~l~~~~~~~~i~~~~~~~~~~~~~~~-~~l~--~~a~~~-~~~~f~~vd~~~--~~~~~~~~gi~~~~~~P~~vi~~~~~ 338 (363)
...+.++.+++.+..+... ....+- +.|. ++.+.. .++.+.-.|... -.++.+.++. ..+|.++++.+++
T Consensus 12 ~ak~e~K~llVylhs~~~~-~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~---~~~P~~~~l~~~~ 87 (116)
T cd02991 12 DAKQELRFLLVYLHGDDHQ-DTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRE---RTYPFLAMIMLKD 87 (116)
T ss_pred HHHhhCCEEEEEEeCCCCc-cHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCC---CCCCEEEEEEecC
Confidence 3445566677666654322 221221 2221 111211 235444456653 3457777877 6899999998763
No 370
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=54.69 E-value=49 Score=21.26 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=29.6
Q ss_pred EEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh--hhhhCCcCcCCEEEE
Q 017971 66 DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR--LASKQEIDAFPTLKI 123 (363)
Q Consensus 66 ~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~--l~~~~~i~~~Pt~~~ 123 (363)
.|+.++|+.|++..-.+.... -.+....++-..... +-+..+-..+|.+..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~-------i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKG-------LPYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcC-------CCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 577889999987766655432 123334444332222 344456678898764
No 371
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=54.64 E-value=19 Score=27.31 Aligned_cols=21 Identities=24% Similarity=0.637 Sum_probs=16.1
Q ss_pred EEEEECCCChhhhhHHHHHHH
Q 017971 64 LVDFYAPWCGHCKRLAPQLDE 84 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~ 84 (363)
+..|+.++|+.|++....+++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~ 22 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE 22 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 346888999999987666654
No 372
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=53.60 E-value=19 Score=29.48 Aligned_cols=45 Identities=11% Similarity=-0.003 Sum_probs=34.9
Q ss_pred chhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhh
Q 017971 206 SEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 250 (363)
Q Consensus 206 ~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~ 250 (363)
...+...|++.+.|+.+++.++......+.|..+.+++.+++.+.
T Consensus 126 ~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 126 NGKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CCchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 445677888888998888866545556677889999999998864
No 373
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=52.94 E-value=70 Score=21.72 Aligned_cols=72 Identities=15% Similarity=0.222 Sum_probs=47.3
Q ss_pred EEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-hhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHH
Q 017971 66 DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRY 144 (363)
Q Consensus 66 ~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~ 144 (363)
.++.++|+.|++..=.++. ++. ++.+..++..+. ..+.+...-..+|++. .+|..+. +...|.+|
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~-----~~i--~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~y 66 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEE-----KGI--PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEY 66 (75)
T ss_dssp EEEETTSHHHHHHHHHHHH-----HTE--EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHH-----cCC--eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe-----CHHHHHHH
Confidence 3678899999887544443 222 255566665553 4556666677899997 4565332 57889999
Q ss_pred HHhhcCC
Q 017971 145 LKKFVAP 151 (363)
Q Consensus 145 i~~~~~~ 151 (363)
+.+..+.
T Consensus 67 L~~~~~~ 73 (75)
T PF13417_consen 67 LEERYPG 73 (75)
T ss_dssp HHHHSTS
T ss_pred HHHHcCC
Confidence 9887654
No 374
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=50.30 E-value=1.3e+02 Score=24.99 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=18.9
Q ss_pred hHHhhcCCCCCCCCCeEEEEeCCCCeeE
Q 017971 315 DFADTFEANKKSKLPKMVVWDGNENYLT 342 (363)
Q Consensus 315 ~~~~~~gi~~~~~~P~~vi~~~~~~y~~ 342 (363)
.+.+.||+ ...|..+++|++|+.-.
T Consensus 137 ~i~~~y~v---~~~P~~~lID~~G~I~~ 161 (189)
T TIGR02661 137 EIGMAFQV---GKIPYGVLLDQDGKIRA 161 (189)
T ss_pred HHHHhccC---CccceEEEECCCCeEEE
Confidence 45666777 56899999999996544
No 375
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=48.98 E-value=40 Score=29.14 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=38.7
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCC-CCeEEEEEeCc
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLK-EPIVIAKVDAD 104 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~-~~v~~~~vd~~ 104 (363)
.+..++|.+-..+|..|..-+..++.+..++...+ .+|.|..||-.
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 45688888999999999999999999988887655 48999999943
No 376
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=47.96 E-value=1.2e+02 Score=23.63 Aligned_cols=100 Identities=22% Similarity=0.231 Sum_probs=53.8
Q ss_pred CeEEc-ChhhHHHhHc-CCCeEEEEEECCCChhhhh--HHHHHHHHHHHhhcCCCCeEEEEEeCccchhh---hhhCC--
Q 017971 44 KVIEL-DESNFDSAIS-SFDYILVDFYAPWCGHCKR--LAPQLDEAAPILAKLKEPIVIAKVDADKYSRL---ASKQE-- 114 (363)
Q Consensus 44 ~v~~l-~~~~f~~~l~-~~~~~lv~fy~~~C~~C~~--~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l---~~~~~-- 114 (363)
...+| +.+..++++. +.+.+|| +-.+-|+ |.. .+|-...+... . ..+ =.+.-|=...+++. ++.|-
T Consensus 17 Gf~eL~T~e~Vd~~~~~~~GTtlV-vVNSVCG-CAag~ARPa~~~al~~-~-kkP-D~lvTVFAGqDkEAt~~aR~yf~~ 91 (136)
T PF06491_consen 17 GFEELTTAEEVDEALKNKEGTTLV-VVNSVCG-CAAGNARPAAAMALQN-D-KKP-DHLVTVFAGQDKEATAKAREYFEP 91 (136)
T ss_dssp T-EE--SHHHHHHHHHH--SEEEE-EEE-SSH-HHHHTHHHHHHHHHHH-S-S---SEEEEEETTTSHHHHHHHHHTSTT
T ss_pred CccccCCHHHHHHHHhCCCCcEEE-EEecccc-ccccccCHHHHHHHhC-C-CCC-CceEEeccCCCHHHHHHHHHhcCC
Confidence 34455 5677888886 5555555 4567888 654 56666655543 2 222 23333444444332 33332
Q ss_pred -cCcCCEEEEEeCCEEEee-----cCCCCHHHHHHHHHhh
Q 017971 115 -IDAFPTLKIFMHGIPTEY-----YGPRKAELLVRYLKKF 148 (363)
Q Consensus 115 -i~~~Pt~~~~~~g~~~~y-----~g~~~~~~i~~~i~~~ 148 (363)
-.+-|++-+|++|+.+.+ -..++++.|.+-+...
T Consensus 92 ~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~a 131 (136)
T PF06491_consen 92 YPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDA 131 (136)
T ss_dssp S---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHH
T ss_pred CCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHH
Confidence 247899999999987643 3457788877766543
No 377
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=47.71 E-value=23 Score=29.99 Aligned_cols=57 Identities=19% Similarity=0.408 Sum_probs=42.9
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC
Q 017971 276 AIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 337 (363)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~ 337 (363)
.++ .+..+....+-..+.=+|..|+-++|+.+-... -..-+.|.+ ..+|++.||++.
T Consensus 165 hIY-Edgi~gcealn~~~~cLAAeyP~vKFckikss~-~gas~~F~~---n~lP~LliYkgG 221 (273)
T KOG3171|consen 165 HIY-EDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSN-TGASDRFSL---NVLPTLLIYKGG 221 (273)
T ss_pred EEe-cCCCchHHHHhhhHHHhhccCCceeEEEeeecc-ccchhhhcc---cCCceEEEeeCC
Confidence 344 446777778888898899999999999987764 223455555 568999999987
No 378
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=47.27 E-value=61 Score=28.88 Aligned_cols=143 Identities=15% Similarity=0.016 Sum_probs=78.8
Q ss_pred CccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHH----hcCCcccEEEe
Q 017971 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVE----NAGTFFPLFIG 178 (363)
Q Consensus 103 ~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~----~~~~~~~~~v~ 178 (363)
|+-.++.+++++|.-.|--+.+.+....+ .-..+.+++.+.+.+.-..+.....+..++.+..+ +.+ .++++.
T Consensus 9 ~dl~~~~~~~~~I~vvPl~I~~~~~~y~D-~~~i~~~~~y~~~~~~~~~p~TS~ps~~~~~~~~~~l~~~~~--~vi~i~ 85 (275)
T TIGR00762 9 ADLPPELIEEYGITVVPLTVIIDGKTYRD-GVDITPEEFYEKLKESKELPKTSQPSPGEFLELYEKLLEEGD--EVLSIH 85 (275)
T ss_pred cCCCHHHHHHcCCEEEEEEEEECCEEeec-CCCCCHHHHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHhCCC--eEEEEE
Confidence 34447788999999999988775432222 12478899999997643322333334445554443 332 245555
Q ss_pred ecCC-hhHHH---HHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCC----------CcccccCCCCHHHHH
Q 017971 179 FGLD-ESVMS---NLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYN----------EHNIFYGPFDEEFLE 244 (363)
Q Consensus 179 ~~~~-~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~----------~~~~~~g~~~~~~l~ 244 (363)
.... +..+. .++..+.+ -.+.++....- -........+.+++.
T Consensus 86 iSs~lSgty~~a~~aa~~~~~-----------------------~~i~ViDS~~~s~~~g~~v~~a~~~~~~G~s~~eI~ 142 (275)
T TIGR00762 86 LSSGLSGTYQSARQAAEMVDE-----------------------AKVTVIDSKSASMGLGLLVLEAAKLAEEGKSLEEIL 142 (275)
T ss_pred cCCchhHHHHHHHHHHhhCCC-----------------------CCEEEECChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4433 22222 22222210 02344432100 011122345889999
Q ss_pred HHHHhhcCCCcccCChhhHHhhhcCCC
Q 017971 245 EFIKQNFLPLSVPINQDTLNLLKDDKR 271 (363)
Q Consensus 245 ~fi~~~~~p~~~~lt~~~~~~l~~~~~ 271 (363)
+|+++........+..+++..+.++++
T Consensus 143 ~~l~~~~~~~~~~f~v~~L~~L~~gGR 169 (275)
T TIGR00762 143 AKLEELRERTKLYFVVDTLEYLVKGGR 169 (275)
T ss_pred HHHHHHHhhcEEEEEECcHHHHHhcCC
Confidence 999988766667777777777777654
No 379
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=46.31 E-value=1e+02 Score=21.58 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=38.2
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCc----hhHHhhcCCCCCCCCCeEEE
Q 017971 276 AIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQF----ADFADTFEANKKSKLPKMVV 333 (363)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~----~~~~~~~gi~~~~~~P~~vi 333 (363)
.++........++.++.|++++.+++++.+..+|.... ..+....|. .....|.+++
T Consensus 4 ~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~-~~~~vP~ifi 64 (85)
T PRK11200 4 VIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGK-PVETVPQIFV 64 (85)
T ss_pred EEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCC-CCCcCCEEEE
Confidence 44555677778888888888887766788888888753 234343443 1256798764
No 380
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=44.70 E-value=78 Score=21.06 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=34.6
Q ss_pred EEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHH
Q 017971 66 DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145 (363)
Q Consensus 66 ~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i 145 (363)
.++.++|++|++..-.+... +-.+....++-.......+..+-...|.+.. .+|.. -.....|.+|+
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-------gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~-----l~es~aI~~yL 69 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-------NIPVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSF-----MAESLDIVAFI 69 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-------CCCeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeE-----eehHHHHHHHH
Confidence 46778999998776555542 2123333444332222223333456788743 22322 12355666665
Q ss_pred H
Q 017971 146 K 146 (363)
Q Consensus 146 ~ 146 (363)
.
T Consensus 70 ~ 70 (71)
T cd03037 70 D 70 (71)
T ss_pred h
Confidence 3
No 381
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=44.56 E-value=27 Score=27.37 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=21.0
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~ 105 (363)
+..|+.++|+.|++...-+++ .+ +.+-.+|..+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~~--i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA-------HQ--LSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------cC--CCeEEEECCC
Confidence 346788999999986544442 22 5566666443
No 382
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=43.60 E-value=1.2e+02 Score=23.67 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=31.4
Q ss_pred hcchhhhhhcCCCCCCeEEEEcCCC----------CCcccccCCCCHHHHHHHHHh
Q 017971 204 DFSEDTMVLYDFDKVPALVALQPSY----------NEHNIFYGPFDEEFLEEFIKQ 249 (363)
Q Consensus 204 ~~~~~~~~~~~~~~~p~iv~~~~~~----------~~~~~~~g~~~~~~l~~fi~~ 249 (363)
..++.+..+|+++..|++|+.++.. .......|..+.+.-.+.+.+
T Consensus 58 ~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~ 113 (130)
T TIGR02742 58 QIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQ 113 (130)
T ss_pred EEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHH
Confidence 3578899999999999999998642 123445566665544444443
No 383
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=42.62 E-value=41 Score=27.39 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=27.1
Q ss_pred CccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEEC----CCC--hhhhhHHHHHHHHHH
Q 017971 33 SEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYA----PWC--GHCKRLAPQLDEAAP 87 (363)
Q Consensus 33 ~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~----~~C--~~C~~~~~~~~~~a~ 87 (363)
.|+.+..++++..+.|.. +..++++++.||. |.| .-| .|+..++++.+
T Consensus 69 iPD~tL~dedg~sisLkk------it~nk~vV~f~YP~asTPGCTkQaC-gFRDnY~k~kk 122 (211)
T KOG0855|consen 69 IPDFTLKDEDGKSISLKK------ITGNKPVVLFFYPAASTPGCTKQAC-GFRDNYEKFKK 122 (211)
T ss_pred CCCcccccCCCCeeeeee------ecCCCcEEEEEeccCCCCCcccccc-cccccHHHHhh
Confidence 344444455555444432 3566788888985 455 234 56666666654
No 384
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=42.40 E-value=88 Score=22.52 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=39.4
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhCC-C-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeC
Q 017971 276 AIVEDETEEKSQKLVTTLKAAASANR-E-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (363)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~a~~~~-~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~ 336 (363)
+++.+ ...........++++.+.+. + +..=.+|..++++.+....+ ...|+++=..|
T Consensus 8 Lyvag-~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~I---vATPtLIK~~P 66 (87)
T TIGR02654 8 LYVAG-NTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKI---LATPTLSKILP 66 (87)
T ss_pred EEEeC-CCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCE---EEecHHhhcCC
Confidence 34444 44445556667777776544 4 88888999999999999988 55677764444
No 385
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.38 E-value=42 Score=28.92 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=32.3
Q ss_pred hhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhhcCC
Q 017971 108 RLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAP 151 (363)
Q Consensus 108 ~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~~~~ 151 (363)
..+++.||++.|++++ +..+.-.|..+.+.+..-+++.+..
T Consensus 175 ~~A~e~gI~gVP~fv~---d~~~~V~Gaq~~~v~~~al~~~~~~ 215 (225)
T COG2761 175 AAAQEMGIRGVPTFVF---DGKYAVSGAQPYDVLEDALRQLLAE 215 (225)
T ss_pred HHHHHCCCccCceEEE---cCcEeecCCCCHHHHHHHHHHHHhc
Confidence 4677889999999998 3345567999999988888877653
No 386
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=42.02 E-value=46 Score=24.90 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=33.8
Q ss_pred EECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC--cCCEEEEE-eCCE
Q 017971 67 FYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID--AFPTLKIF-MHGI 128 (363)
Q Consensus 67 fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~-~~g~ 128 (363)
||..+|+-|......+.+.. ....+.|..+.-....++.+.+++. ...+.++. .+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD-----RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC-----CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 79999999998877777652 2234666655333444455666654 34444443 4444
No 387
>PRK09301 circadian clock protein KaiB; Provisional
Probab=41.51 E-value=94 Score=23.15 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=40.4
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCC-C-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeC
Q 017971 274 VLAIVEDETEEKSQKLVTTLKAAASANR-E-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (363)
Q Consensus 274 ~i~~~~~~~~~~~~~~~~~l~~~a~~~~-~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~ 336 (363)
+-+++.+ .........+.++++.+.+. + +..=.+|..++++.+..+.+ ...|+++=..|
T Consensus 9 LrLyVag-~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~I---vATPTLIK~~P 69 (103)
T PRK09301 9 LKLYVAG-NTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKI---LATPTLAKILP 69 (103)
T ss_pred EEEEEeC-CCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCe---EEecHHhhcCC
Confidence 3344444 44455556677777777544 4 88888999999999999988 56677664444
No 388
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=40.52 E-value=46 Score=19.53 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHhhcCCCcccC-ChhhHH
Q 017971 237 PFDEEFLEEFIKQNFLPLSVPI-NQDTLN 264 (363)
Q Consensus 237 ~~~~~~l~~fi~~~~~p~~~~l-t~~~~~ 264 (363)
..+.++|.+|+.+++.+.-... +++.+-
T Consensus 3 tWs~~~L~~wL~~~gi~~~~~~~~rd~Ll 31 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPKSAKTRDELL 31 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCCCCCCHHHHH
Confidence 4578999999999998886655 554443
No 389
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=40.47 E-value=1.1e+02 Score=20.25 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=30.6
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----chhhhhhCCcCcCCEEEE
Q 017971 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----YSRLASKQEIDAFPTLKI 123 (363)
Q Consensus 65 v~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~~ 123 (363)
..|+.++|+.|++..-.+.... -.+....+|... .+++.+...-...|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~-------l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKG-------IDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcC-------CCceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 3577889999988876655432 123344454321 234444445567899864
No 390
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=39.65 E-value=80 Score=20.99 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=39.1
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-hhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHH
Q 017971 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVR 143 (363)
Q Consensus 65 v~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~ 143 (363)
..++.++|+.|++..-.+... +-++....+|.... +++.+......+|.+. .+|.. -.....|.+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~-------gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~-----l~es~aI~~ 67 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEK-------GVSVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV-----LYESRIIME 67 (73)
T ss_pred EEEECCCChhHHHHHHHHHHc-------CCccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE-----EEcHHHHHH
Confidence 457789999998886554432 22244444554333 3444444556789774 23322 134566777
Q ss_pred HHHh
Q 017971 144 YLKK 147 (363)
Q Consensus 144 ~i~~ 147 (363)
|+.+
T Consensus 68 yL~~ 71 (73)
T cd03059 68 YLDE 71 (73)
T ss_pred HHHh
Confidence 7654
No 391
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=39.61 E-value=59 Score=21.78 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=30.6
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----chhhhhhCCcCcCCEEE
Q 017971 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----YSRLASKQEIDAFPTLK 122 (363)
Q Consensus 65 v~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~ 122 (363)
..|+.+.|+.|++..-.+... +-++....+|..+ .+++.+.......|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-------gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL-------GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc-------CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 467889999998765554442 2224444555322 24555555556789985
No 392
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=37.97 E-value=38 Score=29.39 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=28.3
Q ss_pred hhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhh
Q 017971 107 SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKF 148 (363)
Q Consensus 107 ~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~ 148 (363)
..+.+++|+.++|++++- |+ .+.|..+.++|.+.+...
T Consensus 205 ~~~a~~~gv~gTPt~~v~--~~--~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 205 YKLAQQLGVNGTPTFIVN--GK--LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHhcCCCcCCeEEEC--Ce--eecCCCCHHHHHHHHHHh
Confidence 456777899999999873 32 677888788887776543
No 393
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.87 E-value=71 Score=25.83 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=31.5
Q ss_pred chhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHH---HHHHHHh
Q 017971 206 SEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEF---LEEFIKQ 249 (363)
Q Consensus 206 ~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~---l~~fi~~ 249 (363)
.++++..|++++.|++++|...++..-..+|-+..+. +.+++.+
T Consensus 104 ~~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~ 150 (182)
T COG2143 104 TEELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVAD 150 (182)
T ss_pred HHHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHH
Confidence 3678889999999999999876555556677776554 4444444
No 394
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=37.75 E-value=1.3e+02 Score=23.42 Aligned_cols=73 Identities=11% Similarity=0.111 Sum_probs=37.9
Q ss_pred hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHH---HHHHhC-CCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeC
Q 017971 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLK---AAASAN-RELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (363)
Q Consensus 261 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~---~~a~~~-~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~ 336 (363)
+.+......++|+++.|. .+.....+.+.+..- ++.+.- +++..+.++.+..+.-+. . .....|+++++++
T Consensus 14 eal~~Ak~~~Kpvmv~f~-sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~---~-~g~~vPtivFld~ 88 (130)
T cd02960 14 EGLYKAKKSNKPLMVIHH-LEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS---P-DGQYVPRIMFVDP 88 (130)
T ss_pred HHHHHHHHCCCeEEEEEe-CCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC---c-cCcccCeEEEECC
Confidence 344556677788777754 445555555443221 222222 234444555542211111 1 1245799999999
Q ss_pred CC
Q 017971 337 NE 338 (363)
Q Consensus 337 ~~ 338 (363)
+|
T Consensus 89 ~g 90 (130)
T cd02960 89 SL 90 (130)
T ss_pred CC
Confidence 86
No 395
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=37.75 E-value=22 Score=32.02 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=14.0
Q ss_pred CCCCchhHHHHHHHHHHHHHhh
Q 017971 1 MRGMSKGRIWILLCLLLLTGRG 22 (363)
Q Consensus 1 ~~~m~~~~~~~~~~l~~~~~~~ 22 (363)
|.-|+..|+ |+||.||++=|+
T Consensus 1 MaMmMTGRV-LLVCALCVLWCg 21 (291)
T PTZ00459 1 MAMMMTGRV-LLVCALCVLWCG 21 (291)
T ss_pred CccchhchH-HHHHHHHHHhcC
Confidence 555777765 566777777665
No 396
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=37.43 E-value=45 Score=27.47 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=25.1
Q ss_pred hhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHH
Q 017971 107 SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145 (363)
Q Consensus 107 ~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i 145 (363)
...+.+.||.++|++++ +|+ .+.|....+.+.+.+
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g~--~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DGE--MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CCe--eecccccHHHHHHHh
Confidence 45667889999999987 564 456777666666544
No 397
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=37.23 E-value=44 Score=25.34 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=14.7
Q ss_pred EEEEECCCChhhhhHHHHHH
Q 017971 64 LVDFYAPWCGHCKRLAPQLD 83 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~ 83 (363)
+..|+.|.|..|++...-++
T Consensus 2 i~iy~~p~C~~crkA~~~L~ 21 (113)
T cd03033 2 IIFYEKPGCANNARQKALLE 21 (113)
T ss_pred EEEEECCCCHHHHHHHHHHH
Confidence 35688999999997654443
No 398
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=36.46 E-value=47 Score=27.68 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=27.4
Q ss_pred cchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHH
Q 017971 105 KYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145 (363)
Q Consensus 105 ~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i 145 (363)
++...+.+.||.|+|++++ +|+ +...|..+.+.+.+-+
T Consensus 163 ~~~~~a~~~gv~G~Pt~vv--~g~-~~~~G~~~~~~~~~~i 200 (201)
T cd03024 163 ADEARARQLGISGVPFFVF--NGK-YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHHCCCCcCCEEEE--CCe-EeecCCCCHHHHHHHh
Confidence 3455677889999999998 443 3357888887776543
No 399
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=36.06 E-value=79 Score=29.25 Aligned_cols=86 Identities=14% Similarity=0.125 Sum_probs=51.3
Q ss_pred cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcC----CCCeEEEEEeCccch---hhhhhCCcC-c-CCEEEEEeCCE
Q 017971 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL----KEPIVIAKVDADKYS---RLASKQEID-A-FPTLKIFMHGI 128 (363)
Q Consensus 58 ~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~----~~~v~~~~vd~~~~~---~l~~~~~i~-~-~Pt~~~~~~g~ 128 (363)
...++-+| .|+.|-+..=.+.+++++++.. ..++.++.+-|--|. .--..+|+. + --...+|++|+
T Consensus 262 R~~g~~~I-----SCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~ 336 (359)
T PF04551_consen 262 RKRGPEII-----SCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGE 336 (359)
T ss_dssp S-SS-EEE-----E----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTE
T ss_pred CcCCceee-----eCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCE
Confidence 34456666 6888888766666666655432 236899999998772 122356766 3 44589999999
Q ss_pred EEe-e-cCCCCHHHHHHHHHhh
Q 017971 129 PTE-Y-YGPRKAELLVRYLKKF 148 (363)
Q Consensus 129 ~~~-y-~g~~~~~~i~~~i~~~ 148 (363)
.+. . ....-.+.+++-++++
T Consensus 337 ~v~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 337 VVKKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp EEEEE-CSTCHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHhh
Confidence 886 5 6666677777777664
No 400
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=36.00 E-value=1.2e+02 Score=23.48 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=39.6
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC--CcEEEEEeccCchh---HHhhcCCCCCCCCCeEEEEeCCC
Q 017971 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQFAD---FADTFEANKKSKLPKMVVWDGNE 338 (363)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~f~~vd~~~~~~---~~~~~gi~~~~~~P~~vi~~~~~ 338 (363)
+++++++|+..............|.++..++. ++.++-|..+.... +.+..+ +|.-++.|+++
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~------~~~p~~~D~~~ 90 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF------LPFPVYADPDR 90 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC------CCCeEEECCch
Confidence 35777777755566777777777887777763 47777776654322 333333 34447888775
No 401
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=35.83 E-value=3.1e+02 Score=24.19 Aligned_cols=78 Identities=15% Similarity=0.120 Sum_probs=50.2
Q ss_pred CCCeEEcChhhHHHhHcCCCeEEEEEECCC-Ch-hhhhHHHHHHHHHHHhhcCCC-CeEEEEEeCccchhhhhh----CC
Q 017971 42 DGKVIELDESNFDSAISSFDYILVDFYAPW-CG-HCKRLAPQLDEAAPILAKLKE-PIVIAKVDADKYSRLASK----QE 114 (363)
Q Consensus 42 ~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~-C~-~C~~~~~~~~~~a~~~~~~~~-~v~~~~vd~~~~~~l~~~----~~ 114 (363)
.+....|++.+-+-+-+=++++-|.+|.+. =+ .-..+.+...++-++++..++ ++.+-.+|-..+++..++ +|
T Consensus 6 ~~k~ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~G 85 (271)
T PF09822_consen 6 ANKRYSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYG 85 (271)
T ss_pred CCCCccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcC
Confidence 456677777765544333456666655444 21 235566666666677766666 899999999777776666 88
Q ss_pred cCcCC
Q 017971 115 IDAFP 119 (363)
Q Consensus 115 i~~~P 119 (363)
+...+
T Consensus 86 i~~~~ 90 (271)
T PF09822_consen 86 IQPVQ 90 (271)
T ss_pred CCccc
Confidence 77633
No 402
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=35.44 E-value=2.2e+02 Score=22.42 Aligned_cols=89 Identities=15% Similarity=0.093 Sum_probs=54.6
Q ss_pred HcCCCeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEeCccch------------------hhhhhCCc
Q 017971 57 ISSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADKYS------------------RLASKQEI 115 (363)
Q Consensus 57 l~~~~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~~------------------~l~~~~~i 115 (363)
.++.|+.+|+.++|.-..+..|-... +.+.+-++. ++.+-.-|.+... ...+.++.
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~---nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~ 94 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ---NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKT 94 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc---CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCc
Confidence 34568999999998753333322222 112222322 3666667765532 13556779
Q ss_pred CcCCEEEEEeCC----EEE-eecCCCCHHHHHHHHHhh
Q 017971 116 DAFPTLKIFMHG----IPT-EYYGPRKAELLVRYLKKF 148 (363)
Q Consensus 116 ~~~Pt~~~~~~g----~~~-~y~g~~~~~~i~~~i~~~ 148 (363)
..+|.+.+.... ..+ ...|..+++++++-+...
T Consensus 95 ~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ 132 (136)
T cd02990 95 DQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEA 132 (136)
T ss_pred CCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHH
Confidence 999999998532 222 368999999998877654
No 403
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=35.08 E-value=1.5e+02 Score=21.54 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=34.0
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhC--------CcCcCCEEEE
Q 017971 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ--------EIDAFPTLKI 123 (363)
Q Consensus 65 v~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~i~~~Pt~~~ 123 (363)
|.+|.+.+.-.++....=+.+...++.. +|.|-.+|.+.+++.-+.. +-...|.+++
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k--~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi 66 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAK--KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN 66 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHC--CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE
Confidence 3444445544555555555555566554 3889999998776544432 2356677663
No 404
>COG5510 Predicted small secreted protein [Function unknown]
Probab=35.00 E-value=57 Score=19.93 Aligned_cols=14 Identities=43% Similarity=0.472 Sum_probs=5.9
Q ss_pred CchhHHHHHHHHHH
Q 017971 4 MSKGRIWILLCLLL 17 (363)
Q Consensus 4 m~~~~~~~~~~l~~ 17 (363)
|++..+++.++++.
T Consensus 2 mk~t~l~i~~vll~ 15 (44)
T COG5510 2 MKKTILLIALVLLA 15 (44)
T ss_pred chHHHHHHHHHHHH
Confidence 45444444444333
No 405
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=34.93 E-value=2.2e+02 Score=24.34 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=45.0
Q ss_pred CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhhcC
Q 017971 71 WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVA 150 (363)
Q Consensus 71 ~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~~~ 150 (363)
.|+.|+++.-.+. .+ +..+.+-.||...-++-.+...-.+-|=++.|.+ .+..+.+.|++++.+.+.
T Consensus 20 dcpf~qr~~m~L~-----~k--~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~------~~~tDs~~Ie~~Lee~l~ 86 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE-----LK--GVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDE------KWVTDSDKIEEFLEEKLP 86 (221)
T ss_pred CChhHHHHHHHHH-----Hc--CCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCC------ceeccHHHHHHHHHHhcC
Confidence 4888877765555 12 2258888999998887766655444444433332 233567889999988887
Q ss_pred CCc
Q 017971 151 PDV 153 (363)
Q Consensus 151 ~~v 153 (363)
++-
T Consensus 87 ~p~ 89 (221)
T KOG1422|consen 87 PPK 89 (221)
T ss_pred CCC
Confidence 553
No 406
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=34.20 E-value=97 Score=26.82 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=30.7
Q ss_pred cchhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhh
Q 017971 205 FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 250 (363)
Q Consensus 205 ~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~ 250 (363)
.+..+...+|+.+.|++++-.. .+.|..+.++|...|...
T Consensus 203 ~~~~~a~~~gv~gTPt~~v~~~------~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 203 KNYKLAQQLGVNGTPTFIVNGK------LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHHHhcCCCcCCeEEECCe------eecCCCCHHHHHHHHHHh
Confidence 3466788899999999877421 777888888888888764
No 407
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=33.53 E-value=56 Score=24.99 Aligned_cols=21 Identities=24% Similarity=0.601 Sum_probs=16.4
Q ss_pred EEEEECCCChhhhhHHHHHHH
Q 017971 64 LVDFYAPWCGHCKRLAPQLDE 84 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~ 84 (363)
+..|+.|.|+.|++...-+++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 566899999999888665553
No 408
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=33.47 E-value=3.3e+02 Score=23.76 Aligned_cols=34 Identities=12% Similarity=-0.090 Sum_probs=26.1
Q ss_pred CCeEEEEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971 328 LPKMVVWDGNEN-YLTVSINVLKTRVCFFMLTLLQ 361 (363)
Q Consensus 328 ~P~~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~ 361 (363)
.|...++|++|+ .+...+.+..+.++..+..+|+
T Consensus 201 ~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 201 NFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred CceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 488999999985 4555677777788888887774
No 409
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=33.23 E-value=1.8e+02 Score=26.75 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=53.1
Q ss_pred CChhhhhHHHHHHHHH----HHhhcCCCCeEEEEEeCccch---hhhhhCCcC--cCCEEEEEeCCEEEe-ecCCCCHHH
Q 017971 71 WCGHCKRLAPQLDEAA----PILAKLKEPIVIAKVDADKYS---RLASKQEID--AFPTLKIFMHGIPTE-YYGPRKAEL 140 (363)
Q Consensus 71 ~C~~C~~~~~~~~~~a----~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~--~~Pt~~~~~~g~~~~-y~g~~~~~~ 140 (363)
.|+.|-+..-.+.+.+ +.+.....++.++.+-|--|. ..-..+|+. +-|...+|.+|+.+. ..+..-.++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 7999987655544444 444444557889999996652 223346664 379999999998664 677777777
Q ss_pred HHHHHHhhc
Q 017971 141 LVRYLKKFV 149 (363)
Q Consensus 141 i~~~i~~~~ 149 (363)
++.-++++.
T Consensus 343 l~~~i~~~~ 351 (361)
T COG0821 343 LEALIEAYA 351 (361)
T ss_pred HHHHHHHHH
Confidence 777766653
No 410
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=32.39 E-value=69 Score=26.33 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=30.3
Q ss_pred EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (363)
Q Consensus 63 ~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~ 104 (363)
.+..|+..-|++|-...+.+.++.+.+.+. .+..-.+...
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~--~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDV--EIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTC--EEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--cEEEeccccc
Confidence 367899999999999999999999887332 3555555443
No 411
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=32.33 E-value=1.7e+02 Score=26.06 Aligned_cols=101 Identities=13% Similarity=0.177 Sum_probs=53.3
Q ss_pred hcchhhhhhcCCCCCCeEEEEcCCCCCcccccC-CCCHHHHHHHHHhh-cCCCcccCChhhH----HhhhcCCCcEEEEE
Q 017971 204 DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYG-PFDEEFLEEFIKQN-FLPLSVPINQDTL----NLLKDDKRKIVLAI 277 (363)
Q Consensus 204 ~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g-~~~~~~l~~fi~~~-~~p~~~~lt~~~~----~~l~~~~~~~~i~~ 277 (363)
+.+++..+.+++.-.|--+.+. .....+| +++.+++.+.++++ ..|.-.+.+...+ +.+...+-..++.+
T Consensus 11 dl~~~~~~~~~i~vvPl~i~~~----~~~y~D~~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i 86 (280)
T PF02645_consen 11 DLPPELAEEYGIYVVPLNIIID----GKEYRDGVDISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVI 86 (280)
T ss_dssp ---HHHHHHTTEEEE--EEEET----TEEEETTTTSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCCHHHHHhCCeEEEeEEEecC----CeEEecCCCCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEE
Confidence 3456778888988888777764 3333344 77999999999554 4444444454333 34333455544444
Q ss_pred -EeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccC
Q 017971 278 -VEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ 312 (363)
Q Consensus 278 -~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~ 312 (363)
+.+.-+..+ +....+++.+++..+..+|...
T Consensus 87 ~iSs~LSgty----~~a~~aa~~~~~~~i~ViDS~~ 118 (280)
T PF02645_consen 87 TISSGLSGTY----NSARLAAKMLPDIKIHVIDSKS 118 (280)
T ss_dssp ES-TTT-THH----HHHHHHHHHHTTTEEEEEE-SS
T ss_pred eCCcchhhHH----HHHHHHHhhcCcCEEEEEeCCC
Confidence 333333333 3344455555667888889875
No 412
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=32.23 E-value=31 Score=24.53 Aligned_cols=50 Identities=8% Similarity=0.159 Sum_probs=37.9
Q ss_pred CCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971 280 DETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (363)
Q Consensus 280 ~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v 332 (363)
.............++.++..+.+ +.+-.+|..++++.+...++ .-.|+++
T Consensus 5 ~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~i---vAtPtLi 56 (82)
T PF07689_consen 5 AGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRI---VATPTLI 56 (82)
T ss_dssp SSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEE---ECHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCe---eecceEe
Confidence 44666667778888888887554 88999999999999998877 3445543
No 413
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=31.87 E-value=35 Score=29.43 Aligned_cols=49 Identities=10% Similarity=0.092 Sum_probs=39.0
Q ss_pred cchhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhcCCCc
Q 017971 205 FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLS 255 (363)
Q Consensus 205 ~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p~~ 255 (363)
.+..+.-+|-+...|+|...++ +....|.|..+..++.+|+.......+
T Consensus 82 ~npgLsGRF~vtaLptIYHvkD--GeFrrysgaRdk~dfisf~~~r~w~~i 130 (248)
T KOG0913|consen 82 TNPGLSGRFLVTALPTIYHVKD--GEFRRYSGARDKNDFISFEEHREWQSI 130 (248)
T ss_pred eccccceeeEEEecceEEEeec--cccccccCcccchhHHHHHHhhhhhcc
Confidence 4556666777778899877765 899999999999999999998854443
No 414
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=31.56 E-value=1.8e+02 Score=20.20 Aligned_cols=55 Identities=9% Similarity=0.119 Sum_probs=39.0
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEe
Q 017971 276 AIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWD 335 (363)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~ 335 (363)
.++...+-.-.+.....|.+++...+ +.+..+|..+.+.+...||. ..|.+.+-+
T Consensus 3 ~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~----~IPVl~~~~ 57 (81)
T PF05768_consen 3 TLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY----RIPVLHIDG 57 (81)
T ss_dssp EEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT----STSEEEETT
T ss_pred EEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC----CCCEEEEcC
Confidence 45556677777777777776544333 88999999988889999986 368655555
No 415
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.65 E-value=1.3e+02 Score=22.30 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=43.3
Q ss_pred hhHHHhHcCCCeEEEEEEC---CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCc-CcCCEEE-EEe
Q 017971 51 SNFDSAISSFDYILVDFYA---PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEI-DAFPTLK-IFM 125 (363)
Q Consensus 51 ~~f~~~l~~~~~~lv~fy~---~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i-~~~Pt~~-~~~ 125 (363)
+-.++.+++++.+|-+=-+ |.|+.+.+.-..+. ..+. +.|+.+|.-+++++.+...- ..+||+- +|.
T Consensus 6 ~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~-------~~g~-v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi 77 (105)
T COG0278 6 DRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILS-------ACGV-VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYV 77 (105)
T ss_pred HHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHH-------HcCC-cceeEEeeccCHHHHhccHhhcCCCCCceeeE
Confidence 3456667776666555444 46777655443333 2222 78999999999998776543 4555543 345
Q ss_pred CCEEE
Q 017971 126 HGIPT 130 (363)
Q Consensus 126 ~g~~~ 130 (363)
+|+.+
T Consensus 78 ~GEfv 82 (105)
T COG0278 78 NGEFV 82 (105)
T ss_pred CCEEe
Confidence 66543
No 416
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=30.24 E-value=66 Score=26.01 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=18.2
Q ss_pred chhhhhhCCcCcCCEEEEEeCCEEE
Q 017971 106 YSRLASKQEIDAFPTLKIFMHGIPT 130 (363)
Q Consensus 106 ~~~l~~~~~i~~~Pt~~~~~~g~~~ 130 (363)
+...+.++||.++||+++ +|+.+
T Consensus 132 ~~~~~~~~gi~gTPt~iI--nG~~~ 154 (178)
T cd03019 132 AEKLAKKYKITGVPAFVV--NGKYV 154 (178)
T ss_pred HHHHHHHcCCCCCCeEEE--CCEEE
Confidence 355778899999999997 67644
No 417
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=29.96 E-value=2.6e+02 Score=21.58 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=39.1
Q ss_pred HHHHHHHHH---HHhhcCCCCeEEEEEeCccchh----------hhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHH
Q 017971 78 LAPQLDEAA---PILAKLKEPIVIAKVDADKYSR----------LASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRY 144 (363)
Q Consensus 78 ~~~~~~~~a---~~~~~~~~~v~~~~vd~~~~~~----------l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~ 144 (363)
..|++.+++ +.+++. .+.+.+.|..+++. +-++-|....|-+++ +|+.+..-...+.++|.+|
T Consensus 22 vd~eL~~~a~~~~~Lk~~--gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~~G~YPt~eEl~~~ 97 (123)
T PF06953_consen 22 VDPELVRFAADLDWLKEQ--GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVKTGRYPTNEELAEW 97 (123)
T ss_dssp --HHHHHHHHHHHHHHHT--T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEEESS---HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhC--CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEEecCCCCHHHHHHH
Confidence 344444443 344443 49999999988764 233457888998775 8887776667788999999
Q ss_pred HHhhcC
Q 017971 145 LKKFVA 150 (363)
Q Consensus 145 i~~~~~ 150 (363)
+.-...
T Consensus 98 ~~i~~~ 103 (123)
T PF06953_consen 98 LGISFS 103 (123)
T ss_dssp HT--GG
T ss_pred hCCCcc
Confidence 865543
No 418
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=29.80 E-value=2.5e+02 Score=21.62 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=16.1
Q ss_pred hHHhhcCCCC---CCCCCeEEEEeCCCCe
Q 017971 315 DFADTFEANK---KSKLPKMVVWDGNENY 340 (363)
Q Consensus 315 ~~~~~~gi~~---~~~~P~~vi~~~~~~y 340 (363)
.+.+.||+.. ....|+..+++++|+.
T Consensus 94 ~~~~~~gv~~~~~~~~~~~~~iid~~G~I 122 (143)
T cd03014 94 SFGKAYGVLIKDLGLLARAVFVIDENGKV 122 (143)
T ss_pred HHHHHhCCeeccCCccceEEEEEcCCCeE
Confidence 4666677620 0125788889988853
No 419
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=29.72 E-value=2.8e+02 Score=21.77 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=46.7
Q ss_pred hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971 266 LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (363)
Q Consensus 266 l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v 332 (363)
+......++++-|..+.+...-..-+.|.++|.+.++ ..+..+|.++-+.+-+.|.+ + -|+-+
T Consensus 15 I~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel---~-dP~tv 78 (133)
T PF02966_consen 15 ILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYEL---Y-DPCTV 78 (133)
T ss_dssp HHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS-----SSEEE
T ss_pred HhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhccccc---C-CCeEE
Confidence 4444456777777777777787888899999999888 55667899998999999999 2 46644
No 420
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=28.96 E-value=2.3e+02 Score=26.37 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=49.0
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHH----HHhhcCCCCeEEEEEeCc-cchh--hhhhCCcC-cCCEEEEEeCCEEE
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAA----PILAKLKEPIVIAKVDAD-KYSR--LASKQEID-AFPTLKIFMHGIPT 130 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a----~~~~~~~~~v~~~~vd~~-~~~~--l~~~~~i~-~~Pt~~~~~~g~~~ 130 (363)
+..+.++ .|+.|.+-.-....++ +.+.+...++.++-.-|- ..+. --..+||. +-+...+|.+|+.+
T Consensus 263 ~~g~~Ii-----sCPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v 337 (360)
T PRK00366 263 SRGPEVI-----SCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKI 337 (360)
T ss_pred cCCCeEE-----ECCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEe
Confidence 3445555 6777776555444444 444455556999999995 3222 23456775 45668888999887
Q ss_pred e-ecCCCCHHHHHHHHH
Q 017971 131 E-YYGPRKAELLVRYLK 146 (363)
Q Consensus 131 ~-y~g~~~~~~i~~~i~ 146 (363)
. ..+..-.+.+.+-+.
T Consensus 338 ~kv~~~~~~~~l~~~i~ 354 (360)
T PRK00366 338 KTLPEENIVEELEAEIE 354 (360)
T ss_pred eeeChHhHHHHHHHHHH
Confidence 5 444433444444443
No 421
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.86 E-value=1.4e+02 Score=26.90 Aligned_cols=146 Identities=14% Similarity=0.037 Sum_probs=74.9
Q ss_pred eCccchhhhhhCCcCcCCEEEEEeCCEEEeecC-CCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhc---CCcccEEE
Q 017971 102 DADKYSRLASKQEIDAFPTLKIFMHGIPTEYYG-PRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENA---GTFFPLFI 177 (363)
Q Consensus 102 d~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g-~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~---~~~~~~~v 177 (363)
.|+-.+++.++++|.-.|--+.+.+.... +| ..+.+++..-....-..+-....+..++.+..+.- ....++.+
T Consensus 10 t~dl~~~~~~~~~I~vlPL~V~~~g~~y~--D~~~l~~~~~~~~~~~~~~~p~TSqPs~~~~~~~~~~l~~~g~~~vi~i 87 (282)
T COG1307 10 TADLPPELAEKLDITVLPLSVIIDGESYF--DGVELSPDQFYYEMAEKGELPKTSQPSPGEFEELFEKLLQKGYDEVISI 87 (282)
T ss_pred CCCCCHHHHHhCCeEEEeEEEEECCEEee--ccccCCHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhCCCcEEEEE
Confidence 46667889999999999988777654322 33 45666644333333332333333334444433322 11234555
Q ss_pred eecCC-hhHHH--HHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcCCC----------CCcccccCCCCHHHHH
Q 017971 178 GFGLD-ESVMS--NLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSY----------NEHNIFYGPFDEEFLE 244 (363)
Q Consensus 178 ~~~~~-~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~----------~~~~~~~g~~~~~~l~ 244 (363)
...+. +..+. .+|.++.+. -.+.++.... .-........+.+++.
T Consensus 88 ~iSs~LSgty~~a~~a~~~~~~----------------------~~v~viDS~~~s~~~g~~v~~a~~l~~~G~s~~ei~ 145 (282)
T COG1307 88 HISSGLSGTYQSAQLAAELVEG----------------------AKVHVIDSKSVSMGLGFLVLEAAELAKAGKSFEEIL 145 (282)
T ss_pred EcCCCccHHHHHHHHHHHhccC----------------------ceEEEEcCcchhhHHHHHHHHHHHHHHcCCCHHHHH
Confidence 44432 33332 233333222 1122222110 0011122233688899
Q ss_pred HHHHhhcCCCcccCChhhHHhhhcCCC
Q 017971 245 EFIKQNFLPLSVPINQDTLNLLKDDKR 271 (363)
Q Consensus 245 ~fi~~~~~p~~~~lt~~~~~~l~~~~~ 271 (363)
+|+++..-.....+.-+++..+.++++
T Consensus 146 ~~l~~~~~~t~~~~~v~~L~~L~kgGR 172 (282)
T COG1307 146 KKLEEIREKTKAYFVVDDLDNLVKGGR 172 (282)
T ss_pred HHHHHHHhhcEEEEEECchhHHHhCCC
Confidence 999988777766666677777776664
No 422
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=27.84 E-value=2.5e+02 Score=21.19 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.3
Q ss_pred hcchhhhhhcCCCCCCeEEEEcC
Q 017971 204 DFSEDTMVLYDFDKVPALVALQP 226 (363)
Q Consensus 204 ~~~~~~~~~~~~~~~p~iv~~~~ 226 (363)
..++.+..+|+++..|++++-++
T Consensus 58 ~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 58 QIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred eEChhHHhhCCceEcCEEEEEcC
Confidence 45788999999999999999876
No 423
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=27.56 E-value=1e+02 Score=26.06 Aligned_cols=42 Identities=17% Similarity=0.119 Sum_probs=29.7
Q ss_pred chhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHh
Q 017971 106 YSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKK 147 (363)
Q Consensus 106 ~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~ 147 (363)
+|.+.++|+|..+|++++.-.+..-.-.|..+.+.-.+.+..
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCCCCCEEEecccHHHHHHHHHh
Confidence 599999999999999999744322235677776555555544
No 424
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=27.00 E-value=70 Score=26.36 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=23.8
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHh
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPIL 89 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~ 89 (363)
+..|+.+.|+.|-...+.+.++.+.+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~ 28 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEY 28 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHh
Confidence 56899999999999999999999887
No 425
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=26.55 E-value=81 Score=22.14 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=22.9
Q ss_pred CCCCCeEEEEcCCCCCccccc-CCCCHHHHHHHHHhhc
Q 017971 215 FDKVPALVALQPSYNEHNIFY-GPFDEEFLEEFIKQNF 251 (363)
Q Consensus 215 ~~~~p~iv~~~~~~~~~~~~~-g~~~~~~l~~fi~~~~ 251 (363)
....|.++++...+....... ..++.++|.+|+.++.
T Consensus 39 ~G~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 39 PGAPPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp SS---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 345689888876544444443 6789999999998865
No 426
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=25.98 E-value=1.1e+02 Score=26.54 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=31.2
Q ss_pred chhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhh
Q 017971 206 SEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 250 (363)
Q Consensus 206 ~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~ 250 (363)
+..+..++|+.+.|+++ +.+ .....|..+.+.|.++|...
T Consensus 191 ~~~la~~lgi~gTPtiv-~~~----G~~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 191 HYALGVQFGVQGTPAIV-LSN----GTLVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred hHHHHHHcCCccccEEE-EcC----CeEeeCCCCHHHHHHHHHHc
Confidence 46678889999999988 432 23457888999999999864
No 427
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=25.86 E-value=46 Score=20.73 Aligned_cols=7 Identities=14% Similarity=0.287 Sum_probs=4.3
Q ss_pred CCchhHH
Q 017971 3 GMSKGRI 9 (363)
Q Consensus 3 ~m~~~~~ 9 (363)
+|++.++
T Consensus 2 tlKKsll 8 (46)
T PF03032_consen 2 TLKKSLL 8 (46)
T ss_pred cchHHHH
Confidence 5777644
No 428
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=25.52 E-value=1.7e+02 Score=26.86 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=43.1
Q ss_pred cCCCeEEEEEECCCChhhhhHHHHHH----HHHHHhhcCCCCeEEEEEeCccch-hh--hhhCCcCc--CCEEEEEeCCE
Q 017971 58 SSFDYILVDFYAPWCGHCKRLAPQLD----EAAPILAKLKEPIVIAKVDADKYS-RL--ASKQEIDA--FPTLKIFMHGI 128 (363)
Q Consensus 58 ~~~~~~lv~fy~~~C~~C~~~~~~~~----~~a~~~~~~~~~v~~~~vd~~~~~-~l--~~~~~i~~--~Pt~~~~~~g~ 128 (363)
.+..+-+| .|+.|-+..-.+. ++.+.+.....++.++.+-|--|. -- -..+||.+ .-...+|++|+
T Consensus 253 r~~g~~ii-----SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~ 327 (346)
T TIGR00612 253 RARGVEIV-----ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGK 327 (346)
T ss_pred CcCCCeEE-----ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCE
Confidence 34456666 6777766444443 344445555567999999997662 12 23466653 45688899998
Q ss_pred EEe
Q 017971 129 PTE 131 (363)
Q Consensus 129 ~~~ 131 (363)
.+.
T Consensus 328 ~~~ 330 (346)
T TIGR00612 328 PKA 330 (346)
T ss_pred EeE
Confidence 764
No 429
>PF06842 DUF1242: Protein of unknown function (DUF1242); InterPro: IPR009653 This family consists of a number of eukaryotic proteins of around 72 residues in length. The function of this family is unknown.
Probab=24.99 E-value=55 Score=19.19 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhhhhhc
Q 017971 11 ILLCLLLLTGRGMMLLT 27 (363)
Q Consensus 11 ~~~~l~~~~~~~~~~~~ 27 (363)
+.++|+++++|+.....
T Consensus 2 L~ViLL~ICTCtYir~~ 18 (36)
T PF06842_consen 2 LTVILLLICTCTYIRSI 18 (36)
T ss_pred hhhHHHHHHHhHhHHhH
Confidence 45566777777765543
No 430
>PLN03207 stomagen; Provisional
Probab=23.72 E-value=78 Score=23.11 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=6.3
Q ss_pred CeEEEEEECCCC
Q 017971 61 DYILVDFYAPWC 72 (363)
Q Consensus 61 ~~~lv~fy~~~C 72 (363)
+-.+|--.||-|
T Consensus 65 rr~~igs~aptc 76 (113)
T PLN03207 65 RRLMIGSTAPTC 76 (113)
T ss_pred hhhhhcCcCCcc
Confidence 344555556654
No 431
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=23.51 E-value=1.4e+02 Score=23.57 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=27.2
Q ss_pred hhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHh
Q 017971 207 EDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQ 249 (363)
Q Consensus 207 ~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~ 249 (363)
.......++.+.|++++ . +. .+.+..+.+++.++|++
T Consensus 126 ~~~~~~~~i~~tPt~~i-n---G~--~~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 126 SQLARQLGITGTPTFFI-N---GK--YVVGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHHT-SSSSEEEE-T---TC--EEETTTSHHHHHHHHHH
T ss_pred HHHHHHcCCccccEEEE-C---CE--EeCCCCCHHHHHHHHcC
Confidence 34567899999999887 2 22 25788899999998864
No 432
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=23.31 E-value=84 Score=23.62 Aligned_cols=19 Identities=16% Similarity=0.412 Sum_probs=14.6
Q ss_pred EEEECCCChhhhhHHHHHH
Q 017971 65 VDFYAPWCGHCKRLAPQLD 83 (363)
Q Consensus 65 v~fy~~~C~~C~~~~~~~~ 83 (363)
..|+.|.|..|++....++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~ 20 (112)
T cd03034 2 TIYHNPRCSKSRNALALLE 20 (112)
T ss_pred EEEECCCCHHHHHHHHHHH
Confidence 4688999999998764444
No 433
>PF11587 Prion_bPrPp: Major prion protein bPrPp - N terminal; PDB: 1SKH_A.
Probab=23.13 E-value=38 Score=18.63 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=10.3
Q ss_pred CchhHHHHHHHHHHHHHh
Q 017971 4 MSKGRIWILLCLLLLTGR 21 (363)
Q Consensus 4 m~~~~~~~~~~l~~~~~~ 21 (363)
|.+..+..|++++++++.
T Consensus 1 M~k~~lgcWilvLfvatw 18 (29)
T PF11587_consen 1 MVKSHLGCWILVLFVATW 18 (29)
T ss_dssp --TTTTTTHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHH
Confidence 455556677777776554
No 434
>PF06616 BsuBI_PstI_RE: BsuBI/PstI restriction endonuclease C-terminus; InterPro: IPR009528 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the C terminus of bacterial enzymes similar to type II restriction endonucleases BsuBI and PstI (3.1.21.4 from EC). The enzymes of the BsuBI restriction/modification (R/M) system recognise the target sequence 5'CTGCAG and are functionally identical with those of the PstI R/M system [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 2IXS_B.
Probab=23.10 E-value=2.9e+02 Score=25.11 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCC-CcEEEEEecc-C-----chhHHhhcCCC--CCCCCCeEEEEeCCCCeeEEEEEEeeh
Q 017971 289 LVTTLKAAASANR-ELVFCYVGIK-Q-----FADFADTFEAN--KKSKLPKMVVWDGNENYLTVSINVLKT 350 (363)
Q Consensus 289 ~~~~l~~~a~~~~-~~~f~~vd~~-~-----~~~~~~~~gi~--~~~~~P~~vi~~~~~~y~~~~~~~~~~ 350 (363)
...++.+.|..|- +=...|++-. + ..+.++.+|+. ...++|-+|+++.+.++-..-..++++
T Consensus 167 ~kaIIEeFaprF~pg~~vLyvgDtg~K~~~~d~~~l~~LGi~i~~h~klPDvVl~~~~k~wl~liEaVtS~ 237 (306)
T PF06616_consen 167 IKAIIEEFAPRFAPGPEVLYVGDTGDKVLYFDEELLKELGITIDAHGKLPDVVLYDEEKNWLFLIEAVTSH 237 (306)
T ss_dssp HHHHHHTHHHHHSTT-EEEEEE-SSSS-EEE-HHHHHHC-----TT----SEEEEETTTTEEEEEEE--TT
T ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCceeeccHHHHHHcCCCccccCCCCCEEEEeCCCCcEEEEEEEcCc
Confidence 3455666666543 4555565332 2 36799999985 446799999999998877665555554
No 435
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=22.97 E-value=1.2e+02 Score=26.28 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=20.2
Q ss_pred eEEEE-EECCCChhhhhHHHHHHHHHH
Q 017971 62 YILVD-FYAPWCGHCKRLAPQLDEAAP 87 (363)
Q Consensus 62 ~~lv~-fy~~~C~~C~~~~~~~~~~a~ 87 (363)
..+|+ |++..|..|-.....+.+++.
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~ 68 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLAD 68 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhcc
Confidence 34444 777889999988888888875
No 436
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=22.42 E-value=66 Score=26.51 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=18.7
Q ss_pred chhhhhhCCcCcCCEEEEEeCCE
Q 017971 106 YSRLASKQEIDAFPTLKIFMHGI 128 (363)
Q Consensus 106 ~~~l~~~~~i~~~Pt~~~~~~g~ 128 (363)
+...+.+.||.++|++++..++.
T Consensus 158 ~~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 158 DQKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHHcCCCccCEEEEEeCCe
Confidence 34567788999999999998765
No 437
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=21.89 E-value=2.5e+02 Score=22.86 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=37.0
Q ss_pred CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc
Q 017971 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105 (363)
Q Consensus 59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~ 105 (363)
+++-..+.++++.++.|.-+.-.++.+|+.+.+ .+|.+-.++|.+
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~--~~v~i~~~~~~~ 170 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFE--LDVEIEHVECMH 170 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTE--EEEEEEEEECCC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCC--CCeEEEEecccC
Confidence 345778889999999999999999999998876 248888888865
No 438
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=21.64 E-value=2.8e+02 Score=19.03 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=27.3
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEE
Q 017971 271 RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCY 307 (363)
Q Consensus 271 ~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~ 307 (363)
.|++-..+...+..+..++.+.|+++++..+.+.+.+
T Consensus 3 ~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~ 39 (75)
T PF14492_consen 3 PPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVER 39 (75)
T ss_dssp S-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred CCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555555556678888899999999999998877766
No 439
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=21.50 E-value=96 Score=23.42 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=15.5
Q ss_pred EEEECCCChhhhhHHHHHHH
Q 017971 65 VDFYAPWCGHCKRLAPQLDE 84 (363)
Q Consensus 65 v~fy~~~C~~C~~~~~~~~~ 84 (363)
..|+.|.|..|++....+++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~ 21 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED 21 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 46889999999987665554
No 440
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=21.43 E-value=3e+02 Score=19.33 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=30.5
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-hhhhhhCCcCcCCEEEE
Q 017971 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-SRLASKQEIDAFPTLKI 123 (363)
Q Consensus 64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~ 123 (363)
+..++.+.|+.|++..-.+... +-.+....+|.... +++.+......+|.+..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~-------gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK-------NIPHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-------CCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 5556788899998765444432 22244445554333 23444445567898864
No 441
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.35 E-value=4.4e+02 Score=20.79 Aligned_cols=84 Identities=15% Similarity=0.280 Sum_probs=40.2
Q ss_pred CCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHH-HHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcC-
Q 017971 41 IDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQ-LDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF- 118 (363)
Q Consensus 41 ~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~-~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~- 118 (363)
.++.+..++-++++.. .-.-+.--.||-.--.+|.-. ...+-+-+......+.+...| +.....---+++.|
T Consensus 31 ad~~~~~ft~qeLeal----~~~T~ete~Pw~~gn~rf~Gvsls~Ll~~l~ak~tslt~iALN--dY~a~Ip~sDi~kyn 104 (155)
T COG3915 31 ADGPTVSFTLQELEAL----PDETIETETPWTQGNTRFKGVSLSALLAWLGAKQTSLTVIALN--DYWAEIPYSDIEKYN 104 (155)
T ss_pred cCCCceeecHHHHhcC----CcceEEEecCcccCceeecceeHHHHHHHhhccCcceEEEEec--ceeccCcHHHhhhcc
Confidence 4556666776666651 222344556774333333221 222222233334457777776 22221122234443
Q ss_pred CEEEEEeCCEEE
Q 017971 119 PTLKIFMHGIPT 130 (363)
Q Consensus 119 Pt~~~~~~g~~~ 130 (363)
|-+-++.+|+..
T Consensus 105 pIlA~~~nGn~M 116 (155)
T COG3915 105 PILAIQNNGNYM 116 (155)
T ss_pred cEEEEEeCCcEE
Confidence 777777788754
Done!