Query 017972
Match_columns 363
No_of_seqs 271 out of 898
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 05:02:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 2.5E-33 5.4E-38 271.3 16.2 146 190-362 47-207 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 3.2E-32 6.9E-37 247.7 9.5 128 226-362 1-137 (200)
3 smart00656 Amb_all Amb_all dom 100.0 2.1E-28 4.5E-33 221.4 14.1 105 242-362 10-123 (190)
4 TIGR03805 beta_helix_1 paralle 98.1 9.3E-05 2E-09 72.4 14.4 137 218-359 1-157 (314)
5 PLN03003 Probable polygalactur 98.0 5.9E-05 1.3E-09 78.0 11.6 125 227-361 104-239 (456)
6 PF04431 Pec_lyase_N: Pectate 98.0 5.2E-06 1.1E-10 63.7 2.8 34 114-147 10-43 (56)
7 PLN02218 polygalacturonase ADP 97.7 0.00039 8.6E-09 71.3 11.7 78 265-361 216-293 (431)
8 PLN02188 polygalacturonase/gly 97.7 0.00064 1.4E-08 69.2 13.0 78 265-361 179-256 (404)
9 PLN02793 Probable polygalactur 97.5 0.00087 1.9E-08 69.0 12.2 78 265-361 201-278 (443)
10 PF00295 Glyco_hydro_28: Glyco 97.5 0.00067 1.4E-08 66.4 10.9 104 225-361 90-193 (326)
11 PLN02155 polygalacturonase 97.5 0.00089 1.9E-08 68.1 11.8 78 265-361 169-246 (394)
12 PLN03010 polygalacturonase 97.2 0.0042 9.2E-08 63.6 12.7 54 306-361 205-258 (409)
13 PLN02218 polygalacturonase ADP 96.9 0.013 2.9E-07 60.3 12.5 72 266-360 194-270 (431)
14 PF12708 Pectate_lyase_3: Pect 96.7 0.042 9.1E-07 48.4 12.9 40 217-257 20-62 (225)
15 PLN03010 polygalacturonase 96.7 0.021 4.5E-07 58.6 12.4 85 249-360 146-235 (409)
16 PLN02155 polygalacturonase 96.5 0.028 6E-07 57.4 11.4 104 228-361 107-224 (394)
17 PLN03003 Probable polygalactur 96.2 0.041 8.8E-07 57.4 11.3 68 266-357 190-266 (456)
18 TIGR03805 beta_helix_1 paralle 96.2 0.035 7.7E-07 54.5 10.2 104 247-359 62-179 (314)
19 PLN02793 Probable polygalactur 96.1 0.081 1.7E-06 54.8 12.7 104 228-360 135-255 (443)
20 PF00295 Glyco_hydro_28: Glyco 96.1 0.016 3.5E-07 56.8 7.3 94 244-360 62-170 (326)
21 PF13229 Beta_helix: Right han 96.0 0.036 7.9E-07 45.6 7.9 82 266-355 2-90 (158)
22 PLN02197 pectinesterase 95.9 0.2 4.3E-06 53.9 14.8 134 170-333 244-408 (588)
23 PLN02480 Probable pectinestera 95.8 0.34 7.4E-06 48.9 15.0 103 217-334 62-182 (343)
24 PF01696 Adeno_E1B_55K: Adenov 95.5 0.39 8.5E-06 49.4 14.6 96 218-335 57-163 (386)
25 PLN02188 polygalacturonase/gly 95.5 0.15 3.3E-06 52.2 11.6 104 228-360 114-233 (404)
26 COG5434 PGU1 Endopygalactoruna 94.8 0.16 3.5E-06 54.1 9.7 69 266-352 263-341 (542)
27 PF14592 Chondroitinas_B: Chon 94.5 0.54 1.2E-05 49.0 12.5 144 217-362 6-192 (425)
28 PLN02176 putative pectinestera 93.8 2.4 5.1E-05 43.0 14.9 121 217-351 53-207 (340)
29 TIGR03808 RR_plus_rpt_1 twin-a 93.6 1.1 2.4E-05 47.1 12.6 121 217-355 56-203 (455)
30 PF13229 Beta_helix: Right han 93.5 0.11 2.4E-06 42.7 4.3 42 309-350 115-158 (158)
31 PF05048 NosD: Periplasmic cop 93.2 0.44 9.6E-06 43.6 8.1 72 265-360 36-107 (236)
32 PF05048 NosD: Periplasmic cop 92.9 1.1 2.3E-05 41.2 10.1 100 247-353 43-144 (236)
33 PLN02416 probable pectinestera 92.9 2 4.3E-05 45.9 13.5 115 217-351 244-396 (541)
34 PLN02682 pectinesterase family 92.8 2.7 6E-05 43.1 13.8 103 217-334 84-213 (369)
35 PLN02432 putative pectinestera 92.6 3 6.4E-05 41.5 13.3 96 217-334 25-138 (293)
36 TIGR03808 RR_plus_rpt_1 twin-a 91.8 1 2.2E-05 47.4 9.6 89 267-358 183-288 (455)
37 PLN02170 probable pectinestera 91.5 3.8 8.3E-05 43.9 13.5 97 217-333 239-357 (529)
38 PLN02995 Probable pectinestera 91.4 4 8.6E-05 43.7 13.6 95 217-331 237-354 (539)
39 PLN02201 probable pectinestera 91.0 4.9 0.00011 43.0 13.7 115 217-351 220-372 (520)
40 PLN02488 probable pectinestera 90.5 5.7 0.00012 42.5 13.6 115 217-351 211-363 (509)
41 PLN02708 Probable pectinestera 90.5 5 0.00011 43.1 13.4 115 217-351 255-409 (553)
42 PLN02301 pectinesterase/pectin 90.3 3.3 7.2E-05 44.5 11.8 95 217-331 250-365 (548)
43 PLN02313 Pectinesterase/pectin 90.3 5.9 0.00013 42.9 13.7 115 217-351 289-441 (587)
44 PLN02506 putative pectinestera 90.3 4.9 0.00011 43.1 13.0 116 217-351 246-398 (537)
45 PLN02497 probable pectinestera 90.1 8.7 0.00019 38.9 14.0 105 217-334 46-167 (331)
46 PLN02468 putative pectinestera 89.9 5.6 0.00012 42.8 13.2 115 217-351 272-424 (565)
47 PLN02314 pectinesterase 89.8 5.8 0.00013 42.9 13.2 115 217-351 292-444 (586)
48 PF07602 DUF1565: Protein of u 89.6 7.7 0.00017 37.8 12.8 98 217-333 17-139 (246)
49 PLN02933 Probable pectinestera 89.6 7.2 0.00016 41.9 13.5 96 217-332 232-348 (530)
50 PLN02745 Putative pectinestera 89.1 8.3 0.00018 41.9 13.8 95 217-331 299-414 (596)
51 PLN03043 Probable pectinestera 88.8 7.1 0.00015 41.9 12.9 115 217-351 237-392 (538)
52 PLN02990 Probable pectinestera 88.7 10 0.00022 41.0 14.0 115 217-351 273-426 (572)
53 PLN02665 pectinesterase family 88.6 12 0.00026 38.5 13.8 104 217-335 82-205 (366)
54 PLN02217 probable pectinestera 88.5 8.5 0.00019 42.4 13.5 66 217-285 264-349 (670)
55 PLN02634 probable pectinestera 88.3 16 0.00034 37.6 14.4 103 217-334 70-199 (359)
56 PLN02304 probable pectinestera 88.2 16 0.00034 37.8 14.5 103 217-334 89-212 (379)
57 COG3420 NosD Nitrous oxidase a 88.1 4.3 9.4E-05 41.9 10.3 94 243-352 99-192 (408)
58 PLN02773 pectinesterase 88.0 14 0.00031 37.1 13.8 66 217-285 19-114 (317)
59 PLN02916 pectinesterase family 87.8 12 0.00026 40.1 13.7 66 217-285 201-289 (502)
60 PLN02671 pectinesterase 86.9 19 0.00041 37.0 14.1 102 217-335 73-204 (359)
61 PLN02484 probable pectinestera 86.7 15 0.00033 39.8 13.9 115 217-351 286-439 (587)
62 PLN02713 Probable pectinestera 86.5 9.9 0.00021 41.0 12.4 66 217-285 264-352 (566)
63 smart00656 Amb_all Amb_all dom 86.2 10 0.00022 34.9 10.8 94 246-353 43-144 (190)
64 PF01095 Pectinesterase: Pecti 84.8 14 0.00031 36.5 11.7 114 217-352 14-147 (298)
65 COG5434 PGU1 Endopygalactoruna 84.8 2.9 6.2E-05 44.9 7.4 123 225-358 236-374 (542)
66 PRK10531 acyl-CoA thioesterase 80.5 57 0.0012 34.4 14.6 51 271-334 204-255 (422)
67 PF03211 Pectate_lyase: Pectat 80.0 12 0.00026 35.9 8.9 50 305-355 93-143 (215)
68 PF00544 Pec_lyase_C: Pectate 79.8 9.8 0.00021 35.2 8.1 78 262-353 73-158 (200)
69 TIGR03804 para_beta_helix para 71.5 7.3 0.00016 27.1 3.9 42 310-353 1-42 (44)
70 PF12708 Pectate_lyase_3: Pect 70.3 7.4 0.00016 34.2 4.5 41 314-355 182-222 (225)
71 PF07602 DUF1565: Protein of u 62.8 39 0.00084 33.0 8.1 90 246-357 95-192 (246)
72 PF07172 GRP: Glycine rich pro 60.5 7 0.00015 32.9 2.3 12 66-78 1-12 (95)
73 PRK10123 wcaM putative colanic 49.2 31 0.00068 35.4 5.2 53 271-334 266-318 (464)
74 PF11770 GAPT: GRB2-binding ad 48.6 13 0.00029 34.2 2.3 34 29-68 8-41 (158)
75 TIGR03804 para_beta_helix para 35.8 99 0.0021 21.4 4.7 42 266-329 1-42 (44)
76 PF07822 Toxin_13: Neurotoxin 34.8 9.3 0.0002 29.2 -0.7 23 163-185 20-43 (55)
77 KOG4404 Tandem pore domain K+ 31.5 1.4E+02 0.0031 30.9 6.6 105 60-200 2-110 (350)
78 PF03908 Sec20: Sec20; InterP 30.5 31 0.00067 28.1 1.5 20 38-57 72-91 (92)
79 PF07803 GSG-1: GSG1-like prot 27.9 53 0.0011 29.2 2.6 34 29-62 8-41 (118)
80 PF06196 DUF997: Protein of un 27.2 1.8E+02 0.0038 23.9 5.4 48 35-83 9-56 (80)
81 PF15183 MRAP: Melanocortin-2 24.5 1E+02 0.0022 26.2 3.6 33 57-89 28-60 (90)
82 PF12541 DUF3737: Protein of u 21.5 1.5E+02 0.0033 29.8 4.7 12 340-351 193-204 (277)
83 PF03718 Glyco_hydro_49: Glyco 20.3 4E+02 0.0086 29.5 7.8 73 271-351 327-411 (582)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-33 Score=271.28 Aligned_cols=146 Identities=32% Similarity=0.434 Sum_probs=129.1
Q ss_pred cCCCCCCCeEEEEcCCCCCCCCCCCchhHHHHHhcCCCeEEEEeeceEEEec------eeEEEcCCcEEEeeCCceEEee
Q 017972 190 NAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLK------QELIVNSFKTIDGRGANVHIAN 263 (363)
Q Consensus 190 ~TTGG~GG~iy~VTnlsD~d~vnp~pGTLR~AV~q~~Pr~IVF~~sGtI~Lk------~eL~V~SnKTIdGrGA~v~I~~ 263 (363)
+||||.||.+++|++.+| |..+++..+|..+++-+.|+|++. .+|.+.|||||.|.|++++|.
T Consensus 47 GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~- 115 (345)
T COG3866 47 GTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV- 115 (345)
T ss_pred CcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE-
Confidence 899999999999999986 899999999994444444999987 567789999999999999997
Q ss_pred ceeEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEe-eCCceEEEEeeeeeC--------CCCcce
Q 017972 264 GGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISI-FGSSHIWIDHNSLSH--------CADGLV 334 (363)
Q Consensus 264 G~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI-~gS~NVWIDHcSfS~--------~~DGLI 334 (363)
|+||+|+.+.|||||||+|++... ++ | ..|+|+| .+++|||||||+|+. ..||++
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~-~d-----------~----~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~ 179 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQ-GD-----------P----NYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV 179 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeecc-CC-----------C----CCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence 679999999999999999998542 11 1 2599999 679999999999998 899999
Q ss_pred EeeeCCccEEEEceeEcCCceeEEeecC
Q 017972 335 DAVMGSTAITISNNHMTHHNEVCLYSIF 362 (363)
Q Consensus 335 Dv~~gSt~ITISNn~F~~H~KvmLlG~~ 362 (363)
|+++++++||||||+|++|+|.||+|.+
T Consensus 180 Dik~~AnyITiS~n~fhdh~Kssl~G~s 207 (345)
T COG3866 180 DIKKDANYITISYNKFHDHDKSSLLGSS 207 (345)
T ss_pred EeccCCcEEEEEeeeeecCCeeeeeccC
Confidence 9999999999999999999999999986
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=99.97 E-value=3.2e-32 Score=247.72 Aligned_cols=128 Identities=44% Similarity=0.564 Sum_probs=104.3
Q ss_pred CCeEEEEeeceEEEeceeEEEcCCcEEEeeCCceEEeeceeEEEE-ccccEEEeceEEeecccCCCcceecCCCcCCCCc
Q 017972 226 KPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQ-FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRT 304 (363)
Q Consensus 226 ~Pr~IVF~~sGtI~Lk~eL~V~SnKTIdGrGA~v~I~~G~gItI~-~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~ 304 (363)
+|++| +++|+|+++.+|.|.|||||+|+|++++|. |.|+.+. +++|||||||+|+++ .++..|...+...
T Consensus 1 ~~~ii--~~~g~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~------~~~~~~~~~~~~~ 71 (200)
T PF00544_consen 1 EPLII--KVSGTIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNV------PVDPGPDWSGDGD 71 (200)
T ss_dssp S-EEE--EEHHCCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECE------EEECSTEEETTEE
T ss_pred CcEEE--EEEeEEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEec------cccCCcccCCCcc
Confidence 46655 555999999999999999999999999997 6788887 999999999999985 1122222222333
Q ss_pred CCCCCeEEeeCCceEEEEeeeeeCC--------CCcceEeeeCCccEEEEceeEcCCceeEEeecC
Q 017972 305 VADGDAISIFGSSHIWIDHNSLSHC--------ADGLVDAVMGSTAITISNNHMTHHNEVCLYSIF 362 (363)
Q Consensus 305 ~sdgDaIsI~gS~NVWIDHcSfS~~--------~DGLIDv~~gSt~ITISNn~F~~H~KvmLlG~~ 362 (363)
..++|+|+|++++|||||||+|+|+ .||++|++.++++||||||+|.+|+|+||+|++
T Consensus 72 ~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~ 137 (200)
T PF00544_consen 72 SSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSS 137 (200)
T ss_dssp ECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSC
T ss_pred ccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCC
Confidence 4689999999999999999999999 999999999999999999999999999999986
No 3
>smart00656 Amb_all Amb_all domain.
Probab=99.96 E-value=2.1e-28 Score=221.44 Aligned_cols=105 Identities=58% Similarity=0.855 Sum_probs=96.0
Q ss_pred eeEEEcCCcEEEeeCCceEEeeceeEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEeeCCceEEE
Q 017972 242 QELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWI 321 (363)
Q Consensus 242 ~eL~V~SnKTIdGrGA~v~I~~G~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~gS~NVWI 321 (363)
.+|.|.|||||+|+|+++.|. |++|++++++|||||||+|++..+. ++ .++|+|++++++||||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~~-----------~~----~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPV-----------YG----SDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCccC-----------CC----CCCCEEEEeCCCeEEE
Confidence 578899999999999999996 7899999999999999999975442 22 3789999999999999
Q ss_pred EeeeeeCC---------CCcceEeeeCCccEEEEceeEcCCceeEEeecC
Q 017972 322 DHNSLSHC---------ADGLVDAVMGSTAITISNNHMTHHNEVCLYSIF 362 (363)
Q Consensus 322 DHcSfS~~---------~DGLIDv~~gSt~ITISNn~F~~H~KvmLlG~~ 362 (363)
|||+|+|. .|+++|++.++++||||||+|.+|+|+||+|++
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~ 123 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHS 123 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccC
Confidence 99999998 899999999999999999999999999999985
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.07 E-value=9.3e-05 Score=72.41 Aligned_cols=137 Identities=20% Similarity=0.261 Sum_probs=86.7
Q ss_pred HHHHHhcCCCe-EEEEeeceEEEeceeEEEc-CCcEEEeeCCceEEee-------ceeEEEEccccEEEeceEEeeccc-
Q 017972 218 LRHAVIQDKPL-WIVFKRDMVIQLKQELIVN-SFKTIDGRGANVHIAN-------GGCITIQFVTNVIIHGLHVHDCKP- 287 (363)
Q Consensus 218 LR~AV~q~~Pr-~IVF~~sGtI~Lk~eL~V~-SnKTIdGrGA~v~I~~-------G~gItI~~asNVIIrNL~I~d~~p- 287 (363)
|++|+.+..|- +|++. .|+-++++.|.|. +++||.|.|....+.+ +-+|.+ .++||-|+++++++...
T Consensus 1 iQ~Ai~~A~~GDtI~l~-~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~~ 78 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLP-EGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKGD 78 (314)
T ss_pred CHhHHhhCCCCCEEEEC-CCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCCC
Confidence 35666665554 34444 4777777888885 8899988876422222 334544 47888888888866321
Q ss_pred ------CCCcceecCCCcCCCCc----CCCCCeEEeeCCceEEEEeeeeeCCCCcceEeeeCCccEEEEceeEcCCceeE
Q 017972 288 ------TGNAMVRSSPTHYGWRT----VADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVC 357 (363)
Q Consensus 288 ------~~~~~iR~sp~~~G~r~----~sdgDaIsI~gS~NVWIDHcSfS~~~DGLIDv~~gSt~ITISNn~F~~H~Kvm 357 (363)
+.+..++.. ...|.. ...++||.+..++++-|.+|.++...|--|-+ ..|++++|++|.+.+-....
T Consensus 79 GI~v~~s~~i~I~n~--~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv-~~s~~~~v~nN~~~~n~~GI 155 (314)
T TIGR03805 79 GVKVKGSDGIIIRRL--RVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYV-GQSQNIVVRNNVAEENVAGI 155 (314)
T ss_pred eEEEeCCCCEEEEee--EEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEE-CCCCCeEEECCEEccCcceE
Confidence 111223222 112211 14578999999999999999999888744434 46889999999987655544
Q ss_pred Ee
Q 017972 358 LY 359 (363)
Q Consensus 358 Ll 359 (363)
.+
T Consensus 156 ~i 157 (314)
T TIGR03805 156 EI 157 (314)
T ss_pred EE
Confidence 44
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.98 E-value=5.9e-05 Score=77.99 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=76.8
Q ss_pred CeEEEEeeceEEEeceeEEEcCCcEEEeeCCceEE---eeceeEEEEccccEEEeceEEeecccC--------CCcceec
Q 017972 227 PLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHI---ANGGCITIQFVTNVIIHGLHVHDCKPT--------GNAMVRS 295 (363)
Q Consensus 227 Pr~IVF~~sGtI~Lk~eL~V~SnKTIdGrGA~v~I---~~G~gItI~~asNVIIrNL~I~d~~p~--------~~~~iR~ 295 (363)
..||.|..- +.|.|...=||+|+|..--- ..-.-|++.+++|+.|+||++.+. |. .+..+++
T Consensus 104 ~~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NS-p~w~i~i~~c~nV~i~~ 176 (456)
T PLN03003 104 DQWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDS-PMAHIHISECNYVTISS 176 (456)
T ss_pred cceEEEEcc------cceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecC-CcEEEEEeccccEEEEE
Confidence 348888632 23455444588888853110 001235667777777777777552 11 1222222
Q ss_pred CCCcCCCCcCCCCCeEEeeCCceEEEEeeeeeCCCCcceEeeeCCccEEEEceeEcCCceeEEeec
Q 017972 296 SPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVCLYSI 361 (363)
Q Consensus 296 sp~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~~DGLIDv~~gSt~ITISNn~F~~H~KvmLlG~ 361 (363)
..-.- .......|||.+.+++||+|.+|.++...|+. .++.++++|+|+|+.+.. -..+-+|+
T Consensus 177 l~I~a-p~~spNTDGIDi~~S~nV~I~n~~I~tGDDCI-aiksgs~NI~I~n~~c~~-GHGISIGS 239 (456)
T PLN03003 177 LRINA-PESSPNTDGIDVGASSNVVIQDCIIATGDDCI-AINSGTSNIHISGIDCGP-GHGISIGS 239 (456)
T ss_pred EEEeC-CCCCCCCCcEeecCcceEEEEecEEecCCCeE-EeCCCCccEEEEeeEEEC-CCCeEEee
Confidence 10000 00124679999999999999999998876665 488899999999999853 34566765
No 6
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=97.96 E-value=5.2e-06 Score=63.71 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=30.9
Q ss_pred ccchHHHHHHHhcccCCChHHHHHHHHhhhccch
Q 017972 114 AAKAEVVAEALSKHAVDNPDEIASMVEMSTRNST 147 (363)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 147 (363)
..+.+||+++++++|+|||++|+++||+.|+.++
T Consensus 10 ~~Ra~eA~~~a~~aY~pdP~~Vt~~FN~~V~~~~ 43 (56)
T PF04431_consen 10 QKRAEEARKAALAAYVPDPENVTNEFNRHVHRAM 43 (56)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999998665
No 7
>PLN02218 polygalacturonase ADPG
Probab=97.67 E-value=0.00039 Score=71.31 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=61.7
Q ss_pred eeEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEeeCCceEEEEeeeeeCCCCcceEeeeCCccEE
Q 017972 265 GCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAIT 344 (363)
Q Consensus 265 ~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~~DGLIDv~~gSt~IT 344 (363)
..+.+.+++||.|+||+|.. |. + ....|||.+.+++||.|.+|.++...| .|-++.++++|+
T Consensus 216 w~i~~~~~~nV~i~~v~I~a--~~------~---------spNTDGIdi~ss~nV~I~n~~I~tGDD-cIaIksgs~nI~ 277 (431)
T PLN02218 216 IQISIEKCSNVQVSNVVVTA--PA------D---------SPNTDGIHITNTQNIRVSNSIIGTGDD-CISIESGSQNVQ 277 (431)
T ss_pred EEEEEEceeeEEEEEEEEeC--CC------C---------CCCCCcEeecccceEEEEccEEecCCc-eEEecCCCceEE
Confidence 45677889999999999963 21 1 135799999999999999999998865 555888999999
Q ss_pred EEceeEcCCceeEEeec
Q 017972 345 ISNNHMTHHNEVCLYSI 361 (363)
Q Consensus 345 ISNn~F~~H~KvmLlG~ 361 (363)
|.|+.+. +...+-+|+
T Consensus 278 I~n~~c~-~GHGisIGS 293 (431)
T PLN02218 278 INDITCG-PGHGISIGS 293 (431)
T ss_pred EEeEEEE-CCCCEEECc
Confidence 9999995 334456775
No 8
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.66 E-value=0.00064 Score=69.25 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=62.1
Q ss_pred eeEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEeeCCceEEEEeeeeeCCCCcceEeeeCCccEE
Q 017972 265 GCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAIT 344 (363)
Q Consensus 265 ~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~~DGLIDv~~gSt~IT 344 (363)
..+.+..++||.|+||+|.. |.. ....|||.+..++||+|.+|.+....| .|-++.++++|+
T Consensus 179 w~i~~~~~~~v~i~~v~I~~--~~~---------------spNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI~ 240 (404)
T PLN02188 179 FHIALVECRNFKGSGLKISA--PSD---------------SPNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQVT 240 (404)
T ss_pred eEEEEEccccEEEEEEEEeC--CCC---------------CCCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccEE
Confidence 45677789999999999964 211 135799999999999999999998888 455888999999
Q ss_pred EEceeEcCCceeEEeec
Q 017972 345 ISNNHMTHHNEVCLYSI 361 (363)
Q Consensus 345 ISNn~F~~H~KvmLlG~ 361 (363)
|+|+.+.. -..+-+|+
T Consensus 241 I~n~~c~~-ghGisiGS 256 (404)
T PLN02188 241 ITRIRCGP-GHGISVGS 256 (404)
T ss_pred EEEEEEcC-CCcEEeCC
Confidence 99998853 34566776
No 9
>PLN02793 Probable polygalacturonase
Probab=97.55 E-value=0.00087 Score=69.00 Aligned_cols=78 Identities=23% Similarity=0.193 Sum_probs=60.1
Q ss_pred eeEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEeeCCceEEEEeeeeeCCCCcceEeeeCCccEE
Q 017972 265 GCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAIT 344 (363)
Q Consensus 265 ~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~~DGLIDv~~gSt~IT 344 (363)
..+.+.+++||.|+||+|.. |.. ....|||.+.+++||+|.+|.+....|.. -++.++++|+
T Consensus 201 ~~i~~~~~~nv~i~~l~I~~--p~~---------------spNTDGIdi~~s~nV~I~n~~I~~gDDcI-aik~~s~nI~ 262 (443)
T PLN02793 201 MHIAFTNCRRVTISGLKVIA--PAT---------------SPNTDGIHISASRGVVIKDSIVRTGDDCI-SIVGNSSRIK 262 (443)
T ss_pred eEEEEEccCcEEEEEEEEEC--CCC---------------CCCCCcEeeeccceEEEEeCEEeCCCCeE-EecCCcCCEE
Confidence 45667789999999999964 210 13579999999999999999998776554 4777899999
Q ss_pred EEceeEcCCceeEEeec
Q 017972 345 ISNNHMTHHNEVCLYSI 361 (363)
Q Consensus 345 ISNn~F~~H~KvmLlG~ 361 (363)
|+|+.+.. -...-||+
T Consensus 263 I~n~~c~~-GhGisIGS 278 (443)
T PLN02793 263 IRNIACGP-GHGISIGS 278 (443)
T ss_pred EEEeEEeC-CccEEEec
Confidence 99999853 23455665
No 10
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.55 E-value=0.00067 Score=66.39 Aligned_cols=104 Identities=19% Similarity=0.170 Sum_probs=70.8
Q ss_pred CCCeEEEEeeceEEEeceeEEEcCCcEEEeeCCceEEeeceeEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCc
Q 017972 225 DKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRT 304 (363)
Q Consensus 225 ~~Pr~IVF~~sGtI~Lk~eL~V~SnKTIdGrGA~v~I~~G~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~ 304 (363)
..|+.+.|...-.+.++ +.||. .++ ...+.+..++||.|+||+|.....
T Consensus 90 ~rp~~i~~~~~~~~~i~-------~i~~~--nsp-----~w~~~~~~~~nv~i~~i~I~~~~~----------------- 138 (326)
T PF00295_consen 90 RRPRLIRFNNCKNVTIE-------GITIR--NSP-----FWHIHINDCDNVTISNITINNPAN----------------- 138 (326)
T ss_dssp SSSESEEEEEEEEEEEE-------SEEEE--S-S-----SESEEEESEEEEEEESEEEEEGGG-----------------
T ss_pred cccceeeeeeecceEEE-------eeEec--CCC-----eeEEEEEccCCeEEcceEEEecCC-----------------
Confidence 56888888754223222 23332 122 346778889999999999975210
Q ss_pred CCCCCeEEeeCCceEEEEeeeeeCCCCcceEeeeCCccEEEEceeEcCCceeEEeec
Q 017972 305 VADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVCLYSI 361 (363)
Q Consensus 305 ~sdgDaIsI~gS~NVWIDHcSfS~~~DGLIDv~~gSt~ITISNn~F~~H~KvmLlG~ 361 (363)
....|||.+.+++||.|++|.+....|. |-++.++.+|+|+||+|.. ..++-+|+
T Consensus 139 ~~NtDGid~~~s~nv~I~n~~i~~gDD~-Iaiks~~~ni~v~n~~~~~-ghGisiGS 193 (326)
T PF00295_consen 139 SPNTDGIDIDSSKNVTIENCFIDNGDDC-IAIKSGSGNILVENCTCSG-GHGISIGS 193 (326)
T ss_dssp CTS--SEEEESEEEEEEESEEEESSSES-EEESSEECEEEEESEEEES-SSEEEEEE
T ss_pred CCCcceEEEEeeeEEEEEEeecccccCc-ccccccccceEEEeEEEec-cccceeee
Confidence 1357999999999999999999887554 5477777799999999964 33455654
No 11
>PLN02155 polygalacturonase
Probab=97.53 E-value=0.00089 Score=68.06 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=62.4
Q ss_pred eeEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEeeCCceEEEEeeeeeCCCCcceEeeeCCccEE
Q 017972 265 GCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAIT 344 (363)
Q Consensus 265 ~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~~DGLIDv~~gSt~IT 344 (363)
..+.+.+++||.|+||+|.. |+. + ...|||.+..++||+|.+|.+....|+ |-++.++++|+
T Consensus 169 w~i~~~~~~nv~i~~v~I~~--p~~-----------~----~NtDGidi~~s~nV~I~~~~I~~gDDc-Iaik~gs~nI~ 230 (394)
T PLN02155 169 SHMTLNGCTNVVVRNVKLVA--PGN-----------S----PNTDGFHVQFSTGVTFTGSTVQTGDDC-VAIGPGTRNFL 230 (394)
T ss_pred eEEEEECeeeEEEEEEEEEC--CCC-----------C----CCCCccccccceeEEEEeeEEecCCce-EEcCCCCceEE
Confidence 45677789999999999974 211 1 357999999999999999999988885 45788899999
Q ss_pred EEceeEcCCceeEEeec
Q 017972 345 ISNNHMTHHNEVCLYSI 361 (363)
Q Consensus 345 ISNn~F~~H~KvmLlG~ 361 (363)
|+++.+.. -..+-||+
T Consensus 231 I~n~~c~~-GhGisIGS 246 (394)
T PLN02155 231 ITKLACGP-GHGVSIGS 246 (394)
T ss_pred EEEEEEEC-CceEEecc
Confidence 99998874 34566776
No 12
>PLN03010 polygalacturonase
Probab=97.24 E-value=0.0042 Score=63.58 Aligned_cols=54 Identities=20% Similarity=0.158 Sum_probs=39.6
Q ss_pred CCCCeEEeeCCceEEEEeeeeeCCCCcceEeeeCCccEEEEceeEcCCceeEEeec
Q 017972 306 ADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVCLYSI 361 (363)
Q Consensus 306 sdgDaIsI~gS~NVWIDHcSfS~~~DGLIDv~~gSt~ITISNn~F~~H~KvmLlG~ 361 (363)
...|||.+..++||+|.+|.+....|+ |-++.++++++|.++.... ...+-||+
T Consensus 205 ~NTDGiDi~~s~nV~I~n~~I~~gDDc-Iaiksgs~ni~I~~~~C~~-gHGisIGS 258 (409)
T PLN03010 205 PNTDGIDISYSTNINIFDSTIQTGDDC-IAINSGSSNINITQINCGP-GHGISVGS 258 (409)
T ss_pred CCCCceeeeccceEEEEeeEEecCCCe-EEecCCCCcEEEEEEEeEC-cCCEEEcc
Confidence 367999999999999999999888555 4477777777777766642 22344554
No 13
>PLN02218 polygalacturonase ADPG
Probab=96.87 E-value=0.013 Score=60.28 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=57.5
Q ss_pred eEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEeeCCceEEEEeeeeeCC-----CCcceEeeeCC
Q 017972 266 CITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHC-----ADGLVDAVMGS 340 (363)
Q Consensus 266 gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~-----~DGLIDv~~gS 340 (363)
-|++.+++|+.|+||++++- ..=.|.+.+++||.|++.++... .|| ||+ ..|
T Consensus 194 ~i~f~~~~nv~I~gitl~nS---------------------p~w~i~~~~~~nV~i~~v~I~a~~~spNTDG-Idi-~ss 250 (431)
T PLN02218 194 ALTFYNSKSLIVKNLRVRNA---------------------QQIQISIEKCSNVQVSNVVVTAPADSPNTDG-IHI-TNT 250 (431)
T ss_pred EEEEEccccEEEeCeEEEcC---------------------CCEEEEEEceeeEEEEEEEEeCCCCCCCCCc-Eee-ccc
Confidence 36788999999999999762 12367889999999999999763 343 555 468
Q ss_pred ccEEEEceeEcCCceeEEee
Q 017972 341 TAITISNNHMTHHNEVCLYS 360 (363)
Q Consensus 341 t~ITISNn~F~~H~KvmLlG 360 (363)
++|+|++|.|..-|.+.-|.
T Consensus 251 ~nV~I~n~~I~tGDDcIaIk 270 (431)
T PLN02218 251 QNIRVSNSIIGTGDDCISIE 270 (431)
T ss_pred ceEEEEccEEecCCceEEec
Confidence 99999999999888877664
No 14
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=96.73 E-value=0.042 Score=48.41 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=28.3
Q ss_pred hHHHHH--h-cCCCeEEEEeeceEEEeceeEEEcCCcEEEeeCC
Q 017972 217 TLRHAV--I-QDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGA 257 (363)
Q Consensus 217 TLR~AV--~-q~~Pr~IVF~~sGtI~Lk~eL~V~SnKTIdGrGA 257 (363)
.|..|+ . .....+|.|- .|+-.++++|.+.++++|.|.|.
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~P-~G~Y~i~~~l~~~s~v~l~G~g~ 62 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYFP-PGTYRISGTLIIPSNVTLRGAGG 62 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESST
T ss_pred HHHHhhhhcccCCCeEEEEc-CcEEEEeCCeEcCCCeEEEccCC
Confidence 588888 2 3455666665 47888899999999999999777
No 15
>PLN03010 polygalacturonase
Probab=96.72 E-value=0.021 Score=58.59 Aligned_cols=85 Identities=27% Similarity=0.351 Sum_probs=63.3
Q ss_pred CcEEEeeCCceEEeeceeEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEeeCCceEEEEeeeeeC
Q 017972 249 FKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSH 328 (363)
Q Consensus 249 nKTIdGrGA~v~I~~G~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~ 328 (363)
.=||+|+|..- -.-|++.+++||.|+||++.+- | .=.|.+.+++||.|++..+..
T Consensus 146 ~G~IDG~G~~w----w~~l~~~~~~nv~v~gitl~ns-p--------------------~~~i~i~~~~nv~i~~i~I~a 200 (409)
T PLN03010 146 SGTIDGRGSSF----WEALHISKCDNLTINGITSIDS-P--------------------KNHISIKTCNYVAISKINILA 200 (409)
T ss_pred ceEEeCCCccc----cceEEEEeecCeEEeeeEEEcC-C--------------------ceEEEEeccccEEEEEEEEeC
Confidence 34566666431 1147889999999999999762 1 235778899999999999876
Q ss_pred C-----CCcceEeeeCCccEEEEceeEcCCceeEEee
Q 017972 329 C-----ADGLVDAVMGSTAITISNNHMTHHNEVCLYS 360 (363)
Q Consensus 329 ~-----~DGLIDv~~gSt~ITISNn~F~~H~KvmLlG 360 (363)
. .|| ||+ ..|++|+|++|.+..-|.+.-+.
T Consensus 201 ~~~s~NTDG-iDi-~~s~nV~I~n~~I~~gDDcIaik 235 (409)
T PLN03010 201 PETSPNTDG-IDI-SYSTNINIFDSTIQTGDDCIAIN 235 (409)
T ss_pred CCCCCCCCc-eee-eccceEEEEeeEEecCCCeEEec
Confidence 3 344 554 46899999999999998887664
No 16
>PLN02155 polygalacturonase
Probab=96.47 E-value=0.028 Score=57.40 Aligned_cols=104 Identities=17% Similarity=0.308 Sum_probs=73.2
Q ss_pred eEEEEeeceEEEeceeEEEcCCcEEEeeCCceEEe--e-------ceeEEEEccccEEEeceEEeecccCCCcceecCCC
Q 017972 228 LWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIA--N-------GGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPT 298 (363)
Q Consensus 228 r~IVF~~sGtI~Lk~eL~V~SnKTIdGrGA~v~I~--~-------G~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~ 298 (363)
.||.|..- +.+.|.. =||+|||..---. . -..|++.+++||.|++|++.+. |
T Consensus 107 ~wi~~~~~------~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS-p----------- 167 (394)
T PLN02155 107 YWILFNKV------NRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS-Q----------- 167 (394)
T ss_pred eeEEEECc------CCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC-C-----------
Confidence 47766632 2344443 6788888631100 0 0237788999999999999752 1
Q ss_pred cCCCCcCCCCCeEEeeCCceEEEEeeeeeCCC-----CcceEeeeCCccEEEEceeEcCCceeEEeec
Q 017972 299 HYGWRTVADGDAISIFGSSHIWIDHNSLSHCA-----DGLVDAVMGSTAITISNNHMTHHNEVCLYSI 361 (363)
Q Consensus 299 ~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~~-----DGLIDv~~gSt~ITISNn~F~~H~KvmLlG~ 361 (363)
.=.+.+.+++||.|+|+.+..-. || ||+ ..+++|+|++|++..-|.+..+++
T Consensus 168 ---------~w~i~~~~~~nv~i~~v~I~~p~~~~NtDG-idi-~~s~nV~I~~~~I~~gDDcIaik~ 224 (394)
T PLN02155 168 ---------VSHMTLNGCTNVVVRNVKLVAPGNSPNTDG-FHV-QFSTGVTFTGSTVQTGDDCVAIGP 224 (394)
T ss_pred ---------CeEEEEECeeeEEEEEEEEECCCCCCCCCc-ccc-ccceeEEEEeeEEecCCceEEcCC
Confidence 23577889999999999997643 44 454 468999999999999988877764
No 17
>PLN03003 Probable polygalacturonase At3g15720
Probab=96.25 E-value=0.041 Score=57.38 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=45.9
Q ss_pred eEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCCcceEe--------
Q 017972 266 CITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLVDA-------- 336 (363)
Q Consensus 266 gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~DGLIDv-------- 336 (363)
||-+..++||.|+|-.|. .+.|+|.|. |++||+|.+|++..++ | |.+
T Consensus 190 GIDi~~S~nV~I~n~~I~----------------------tGDDCIaiksgs~NI~I~n~~c~~GH-G-ISIGSlg~~g~ 245 (456)
T PLN03003 190 GIDVGASSNVVIQDCIIA----------------------TGDDCIAINSGTSNIHISGIDCGPGH-G-ISIGSLGKDGE 245 (456)
T ss_pred cEeecCcceEEEEecEEe----------------------cCCCeEEeCCCCccEEEEeeEEECCC-C-eEEeeccCCCC
Confidence 455556666666666553 357999998 5779999999886643 3 211
Q ss_pred eeCCccEEEEceeEcCCceeE
Q 017972 337 VMGSTAITISNNHMTHHNEVC 357 (363)
Q Consensus 337 ~~gSt~ITISNn~F~~H~Kvm 357 (363)
..+..+|+|+||.|.+.+..+
T Consensus 246 ~~~V~NV~v~n~~~~~T~nGv 266 (456)
T PLN03003 246 TATVENVCVQNCNFRGTMNGA 266 (456)
T ss_pred cceEEEEEEEeeEEECCCcEE
Confidence 123578999999998866544
No 18
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=96.23 E-value=0.035 Score=54.53 Aligned_cols=104 Identities=19% Similarity=0.168 Sum_probs=64.3
Q ss_pred cCCcEEEeeCCceEEeeceeEEEEccccEEEeceEEeec--------------ccCCCcceecCCCcCCCCcCCCCCeEE
Q 017972 247 NSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDC--------------KPTGNAMVRSSPTHYGWRTVADGDAIS 312 (363)
Q Consensus 247 ~SnKTIdGrGA~v~I~~G~gItI~~asNVIIrNL~I~d~--------------~p~~~~~iR~sp~~~G~r~~sdgDaIs 312 (363)
.+++||.|-.-.. ..+.||.+++++|++|+|+++... ....+..|++...+ ....+||.
T Consensus 62 a~~VtI~~ltI~~--~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~-----g~~d~GIy 134 (314)
T TIGR03805 62 SDDVTLSDLAVEN--TKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVR-----GASDAGIY 134 (314)
T ss_pred eCCeEEEeeEEEc--CCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEE-----CCCcccEE
Confidence 5666666643211 124577888888999998888521 01112333332211 11335888
Q ss_pred eeCCceEEEEeeeeeCCCCcceEeeeCCccEEEEceeEcCCceeEEe
Q 017972 313 IFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVCLY 359 (363)
Q Consensus 313 I~gS~NVWIDHcSfS~~~DGLIDv~~gSt~ITISNn~F~~H~KvmLl 359 (363)
+..++++.|-+|.+.....|.- + ..|.+++|.+|.+.+..-..++
T Consensus 135 v~~s~~~~v~nN~~~~n~~GI~-i-~~S~~~~v~~N~~~~N~~Gi~v 179 (314)
T TIGR03805 135 VGQSQNIVVRNNVAEENVAGIE-I-ENSQNADVYNNIATNNTGGILV 179 (314)
T ss_pred ECCCCCeEEECCEEccCcceEE-E-EecCCcEEECCEEeccceeEEE
Confidence 8888899999998887777654 2 3467788888888776555544
No 19
>PLN02793 Probable polygalacturonase
Probab=96.12 E-value=0.081 Score=54.80 Aligned_cols=104 Identities=18% Similarity=0.261 Sum_probs=72.6
Q ss_pred eEEEEeeceEEEeceeEEEcCCcEEEeeCCceE-----Eee-------ceeEEEEccccEEEeceEEeecccCCCcceec
Q 017972 228 LWIVFKRDMVIQLKQELIVNSFKTIDGRGANVH-----IAN-------GGCITIQFVTNVIIHGLHVHDCKPTGNAMVRS 295 (363)
Q Consensus 228 r~IVF~~sGtI~Lk~eL~V~SnKTIdGrGA~v~-----I~~-------G~gItI~~asNVIIrNL~I~d~~p~~~~~iR~ 295 (363)
.||.|..- +.+.|.-.=||+|+|..-- ... -.-|++.+++||.|+||++.+-
T Consensus 135 ~~i~~~~~------~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nS---------- 198 (443)
T PLN02793 135 KWLYFHGV------NHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDS---------- 198 (443)
T ss_pred eEEEEecC------ceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcC----------
Confidence 47776521 2344544458888886311 000 1237788999999999999752
Q ss_pred CCCcCCCCcCCCCCeEEeeCCceEEEEeeeeeCC-----CCcceEeeeCCccEEEEceeEcCCceeEEee
Q 017972 296 SPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHC-----ADGLVDAVMGSTAITISNNHMTHHNEVCLYS 360 (363)
Q Consensus 296 sp~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~-----~DGLIDv~~gSt~ITISNn~F~~H~KvmLlG 360 (363)
| .=.+.+.+++||.|++.++... .|| ||+ ..|++|+|+||.+..-|.+.-+.
T Consensus 199 -p----------~~~i~~~~~~nv~i~~l~I~~p~~spNTDG-Idi-~~s~nV~I~n~~I~~gDDcIaik 255 (443)
T PLN02793 199 -Q----------QMHIAFTNCRRVTISGLKVIAPATSPNTDG-IHI-SASRGVVIKDSIVRTGDDCISIV 255 (443)
T ss_pred -C----------CeEEEEEccCcEEEEEEEEECCCCCCCCCc-Eee-eccceEEEEeCEEeCCCCeEEec
Confidence 1 2356778899999999999763 344 454 46899999999999999888774
No 20
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=96.12 E-value=0.016 Score=56.76 Aligned_cols=94 Identities=22% Similarity=0.314 Sum_probs=64.6
Q ss_pred EEEcCCcEEEeeCCceE----------EeeceeEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEe
Q 017972 244 LIVNSFKTIDGRGANVH----------IANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISI 313 (363)
Q Consensus 244 L~V~SnKTIdGrGA~v~----------I~~G~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI 313 (363)
+.+.-.=||+|+|..=. ...-.-|++.+++|+.|++|++.+. | .=.+.+
T Consensus 62 i~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~ns-p--------------------~w~~~~ 120 (326)
T PF00295_consen 62 ITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNS-P--------------------FWHIHI 120 (326)
T ss_dssp EECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES--S--------------------SESEEE
T ss_pred EEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCC-C--------------------eeEEEE
Confidence 34444469999987200 0001247888999999999999762 1 125778
Q ss_pred eCCceEEEEeeeeeCC-----CCcceEeeeCCccEEEEceeEcCCceeEEee
Q 017972 314 FGSSHIWIDHNSLSHC-----ADGLVDAVMGSTAITISNNHMTHHNEVCLYS 360 (363)
Q Consensus 314 ~gS~NVWIDHcSfS~~-----~DGLIDv~~gSt~ITISNn~F~~H~KvmLlG 360 (363)
..++||+|+|.++... .|| ||+ .++++|+|.||.+...|.+.-+.
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDG-id~-~~s~nv~I~n~~i~~gDD~Iaik 170 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDG-IDI-DSSKNVTIENCFIDNGDDCIAIK 170 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--S-EEE-ESEEEEEEESEEEESSSESEEES
T ss_pred EccCCeEEcceEEEecCCCCCcce-EEE-EeeeEEEEEEeecccccCccccc
Confidence 8999999999999753 455 454 46899999999999988876554
No 21
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=96.01 E-value=0.036 Score=45.56 Aligned_cols=82 Identities=26% Similarity=0.368 Sum_probs=39.9
Q ss_pred eEEEEccccEEEeceEEeecccCC-------CcceecCCCcCCCCcCCCCCeEEeeCCceEEEEeeeeeCCCCcceEeee
Q 017972 266 CITIQFVTNVIIHGLHVHDCKPTG-------NAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVM 338 (363)
Q Consensus 266 gItI~~asNVIIrNL~I~d~~p~~-------~~~iR~sp~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~~DGLIDv~~ 338 (363)
||.+.+..++.|++.+|+++...+ ...+++...+ ..+.+|.+.+..++.|+.|.+.... ..+.+.
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~------~~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~~- 73 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTIS------NGGYGIYVSGGSNVTISNNTISDNG-SGIYVS- 73 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEE------SSTTSEEEECCES-EEES-EEES-S-EEEECC-
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEE------CCCcEEEEecCCCeEEECeEEEEcc-ceEEEE-
Confidence 577888899999999998742110 0011111000 1345555555566666666666555 333332
Q ss_pred CCccEEEEceeEcCCce
Q 017972 339 GSTAITISNNHMTHHNE 355 (363)
Q Consensus 339 gSt~ITISNn~F~~H~K 355 (363)
.+..++|.+|.|.+...
T Consensus 74 ~~~~~~i~~~~i~~~~~ 90 (158)
T PF13229_consen 74 GSSNITIENNRIENNGD 90 (158)
T ss_dssp S-CS-EEES-EEECSSS
T ss_pred ecCCceecCcEEEcCCC
Confidence 45566666666665444
No 22
>PLN02197 pectinesterase
Probab=95.92 E-value=0.2 Score=53.92 Aligned_cols=134 Identities=21% Similarity=0.270 Sum_probs=78.3
Q ss_pred cCcccc--CccchhhcccccCCcCCCCCCCe---EEEEcCCCCCCCCCCCch---hHHHHHhc----CCCeEEEEeeceE
Q 017972 170 DGNWHK--NRKRLADCGIGFGRNAIGGRDGR---FYVVTDPRDDDPVNPKPG---TLRHAVIQ----DKPLWIVFKRDMV 237 (363)
Q Consensus 170 d~nW~~--~Rq~LA~cA~GFG~~TTGG~GG~---iy~VTnlsD~d~vnp~pG---TLR~AV~q----~~Pr~IVF~~sGt 237 (363)
.|.|-. +|+-|+ +.+.|.++-||.++. .++|.- | ++| |+.+||.. +..++||+=+.|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~--d------GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVAK--D------GSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEcC--C------CCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 488865 466664 345566676766554 233331 2 445 77888853 2335555555666
Q ss_pred EEeceeEEE---cCCcEEEeeCCceEEe---------ece------eEEEEccccEEEeceEEeecccCCCcceecCCCc
Q 017972 238 IQLKQELIV---NSFKTIDGRGANVHIA---------NGG------CITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTH 299 (363)
Q Consensus 238 I~Lk~eL~V---~SnKTIdGrGA~v~I~---------~G~------gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~ 299 (363)
.++.+.| .+|+|+.|.|..-+|. +|. .+. ..+++++.+||.|+|-.+
T Consensus 314 --Y~E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~-v~~~~F~a~nitf~Ntag------------ 378 (588)
T PLN02197 314 --YNEQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQ-VESEGFMAKWIGFKNTAG------------ 378 (588)
T ss_pred --EEEEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEE-EECCcEEEEEeEEEeCCC------------
Confidence 4566767 4688898888754332 121 122 258999999999987321
Q ss_pred CCCCcCCCCCeEEee-CCceEEEEeeeeeCCCCcc
Q 017972 300 YGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGL 333 (363)
Q Consensus 300 ~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~DGL 333 (363)
. .++-|+.+. .+...-+.+|.|.-..|=|
T Consensus 379 --~---~~~QAVAlrv~~D~~~fy~C~f~GyQDTL 408 (588)
T PLN02197 379 --P---MGHQAVAIRVNGDRAVIFNCRFDGYQDTL 408 (588)
T ss_pred --C---CCCceEEEEecCCcEEEEEeEEEecCcce
Confidence 0 123455554 4666777777776554443
No 23
>PLN02480 Probable pectinesterase
Probab=95.78 E-value=0.34 Score=48.92 Aligned_cols=103 Identities=17% Similarity=0.346 Sum_probs=65.3
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceE-Ee---------eceeEEEEccccEEEec
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IA---------NGGCITIQFVTNVIIHG 279 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~-I~---------~G~gItI~~asNVIIrN 279 (363)
|+.+||.+ +..+++++=+.|+- ++.|.| .+|+||.|.+...+ |. .+..++| .++|++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~GvY--~E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGVY--REKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcEE--EEEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEEe
Confidence 78888853 22345554445654 477777 57889998875432 32 2334555 479999999
Q ss_pred eEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCCcce
Q 017972 280 LHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLV 334 (363)
Q Consensus 280 L~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~DGLI 334 (363)
|+|+|-.+.+. ....++-|+.+. .++++-+.+|.|.-..|=|.
T Consensus 139 LTf~Nta~~g~------------~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy 182 (343)
T PLN02480 139 ISIRNDAPTGM------------AFTSENQSVAAFVGADKVAFYHCAFYSTHNTLF 182 (343)
T ss_pred eEEEecCCCCC------------CCCCCCceEEEEecCCcEEEEeeEEecccceeE
Confidence 99998533110 011234566664 67889999999987666654
No 24
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=95.53 E-value=0.39 Score=49.42 Aligned_cols=96 Identities=13% Similarity=0.159 Sum_probs=66.9
Q ss_pred HHHHHhcCCCeEEEEeeceEEEeceeEEEcCCcEEEeeCCceEEe--eceeEEE---------EccccEEEeceEEeecc
Q 017972 218 LRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIA--NGGCITI---------QFVTNVIIHGLHVHDCK 286 (363)
Q Consensus 218 LR~AV~q~~Pr~IVF~~sGtI~Lk~eL~V~SnKTIdGrGA~v~I~--~G~gItI---------~~asNVIIrNL~I~d~~ 286 (363)
|-.|+.+-. -|..+.+-+-.+++++.|.+..+|+|+||-+.|. ++.+|++ .+-.+|.+.|++|+.-
T Consensus 57 le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~- 133 (386)
T PF01696_consen 57 LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR- 133 (386)
T ss_pred HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC-
Confidence 666665543 3556666677788999999999999999998773 3445654 3567888888888631
Q ss_pred cCCCcceecCCCcCCCCcCCCCCeEEeeCCceEEEEeeeeeCCCCcceE
Q 017972 287 PTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVD 335 (363)
Q Consensus 287 p~~~~~iR~sp~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~~DGLID 335 (363)
..--++-+...+++-|.-|+|....--.++
T Consensus 134 -------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~ 163 (386)
T PF01696_consen 134 -------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLE 163 (386)
T ss_pred -------------------CccceeEEEecceEEEEeeEEecCcceeEE
Confidence 113456667778888888888874433333
No 25
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=95.50 E-value=0.15 Score=52.21 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=73.8
Q ss_pred eEEEEeeceEEEeceeEEEcCCcEEEeeCCceE------Ee-----eceeEEEEccccEEEeceEEeecccCCCcceecC
Q 017972 228 LWIVFKRDMVIQLKQELIVNSFKTIDGRGANVH------IA-----NGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSS 296 (363)
Q Consensus 228 r~IVF~~sGtI~Lk~eL~V~SnKTIdGrGA~v~------I~-----~G~gItI~~asNVIIrNL~I~d~~p~~~~~iR~s 296 (363)
.||.|.. -..|.|...=||+|+|..-- .. .-.-|.+..++||.|++|++.+.
T Consensus 114 ~~i~~~~------~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS----------- 176 (404)
T PLN02188 114 DWIEFGW------VNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS----------- 176 (404)
T ss_pred ceEEEec------eeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC-----------
Confidence 4777641 13455655678888886310 00 01236778999999999999762
Q ss_pred CCcCCCCcCCCCCeEEeeCCceEEEEeeeeeCC-----CCcceEeeeCCccEEEEceeEcCCceeEEee
Q 017972 297 PTHYGWRTVADGDAISIFGSSHIWIDHNSLSHC-----ADGLVDAVMGSTAITISNNHMTHHNEVCLYS 360 (363)
Q Consensus 297 p~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~-----~DGLIDv~~gSt~ITISNn~F~~H~KvmLlG 360 (363)
..=.|.+.+++||.|++.++..- .|| ||+ ..+++|+|.+|.|..-|.+.-++
T Consensus 177 ----------p~w~i~~~~~~~v~i~~v~I~~~~~spNtDG-idi-~~s~nV~I~n~~I~~GDDcIaik 233 (404)
T PLN02188 177 ----------KFFHIALVECRNFKGSGLKISAPSDSPNTDG-IHI-ERSSGVYISDSRIGTGDDCISIG 233 (404)
T ss_pred ----------CCeEEEEEccccEEEEEEEEeCCCCCCCCCc-Eee-eCcccEEEEeeEEeCCCcEEEEc
Confidence 13357788999999999999763 344 554 46899999999999999887774
No 26
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=94.83 E-value=0.16 Score=54.13 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=42.0
Q ss_pred eEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEeeCCceEEEEeeeeeCCCCcc--------e--E
Q 017972 266 CITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGL--------V--D 335 (363)
Q Consensus 266 gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~~DGL--------I--D 335 (363)
++..+.+.|+.|+||+|..-.+ ...|++.+.+++||-|+-|.|+.+.|.. . +
T Consensus 263 ~~h~~~~~nl~~~nl~I~~~~~------------------~NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~ 324 (542)
T COG5434 263 TVHPVDCDNLTFRNLTIDANRF------------------DNTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKK 324 (542)
T ss_pred EEeeecccCceecceEEECCCC------------------CCCCccccccceeEEEeccEEecCCceEEeecccCCcccc
Confidence 4555677777777777753111 1457777777777777777777755532 1 1
Q ss_pred eeeCCccEEEEceeEcC
Q 017972 336 AVMGSTAITISNNHMTH 352 (363)
Q Consensus 336 v~~gSt~ITISNn~F~~ 352 (363)
...-+.+|+|++|+|..
T Consensus 325 ~~~~~~~i~i~~c~~~~ 341 (542)
T COG5434 325 GYGPSRNIVIRNCYFSS 341 (542)
T ss_pred cccccccEEEecceecc
Confidence 22234567777777763
No 27
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=94.54 E-value=0.54 Score=48.95 Aligned_cols=144 Identities=16% Similarity=0.151 Sum_probs=60.3
Q ss_pred hHHHHHhcCCCeEEEEeeceEEEeceeEEE-cC-----CcEEEee-CCceEEeeceeEEEEccccEEEeceEEeecccCC
Q 017972 217 TLRHAVIQDKPLWIVFKRDMVIQLKQELIV-NS-----FKTIDGR-GANVHIANGGCITIQFVTNVIIHGLHVHDCKPTG 289 (363)
Q Consensus 217 TLR~AV~q~~Pr~IVF~~sGtI~Lk~eL~V-~S-----nKTIdGr-GA~v~I~~G~gItI~~asNVIIrNL~I~d~~p~~ 289 (363)
+|..|+.+-.|=--++=++|+-+ ..+|.+ ++ -+||-.+ +..|.|.+..+|+|. .+.++|.+|.|++-.+..
T Consensus 6 ~lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ng~~~~ 83 (425)
T PF14592_consen 6 ELQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFKNGYTPT 83 (425)
T ss_dssp HHHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE---T
T ss_pred HHHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEecCCCCC
Confidence 69999986444322222347766 345555 22 3777775 345667655678886 699999999998743322
Q ss_pred CcceecC--CC-----c--------CCCCc-CCCCCeEEe----eCCceEEEEeeeeeCCC-Cc-ceEee-------eCC
Q 017972 290 NAMVRSS--PT-----H--------YGWRT-VADGDAISI----FGSSHIWIDHNSLSHCA-DG-LVDAV-------MGS 340 (363)
Q Consensus 290 ~~~iR~s--p~-----~--------~G~r~-~sdgDaIsI----~gS~NVWIDHcSfS~~~-DG-LIDv~-------~gS 340 (363)
+..+... .. + ..+.. ..+.+...| .-++|-=||||.|..-. .| .+-+. .-.
T Consensus 84 ~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~~ 163 (425)
T PF14592_consen 84 GAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSIA 163 (425)
T ss_dssp TT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS----
T ss_pred CceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCccccc
Confidence 2222110 00 0 01100 111122333 23455567999999732 23 33322 134
Q ss_pred ccEEEEceeEcC-------CceeEEeecC
Q 017972 341 TAITISNNHMTH-------HNEVCLYSIF 362 (363)
Q Consensus 341 t~ITISNn~F~~-------H~KvmLlG~~ 362 (363)
.+-+|.+|||.+ ..+++-||.|
T Consensus 164 ~~h~IdhNyF~~rp~~g~NggEtIRiG~S 192 (425)
T PF14592_consen 164 NYHRIDHNYFGPRPPKGGNGGETIRIGTS 192 (425)
T ss_dssp ---EEES-EEE-E---SSS---SEEE-SS
T ss_pred cCceEEeccccccCCCCCCCceeEEEecc
Confidence 577899999984 4456666654
No 28
>PLN02176 putative pectinesterase
Probab=93.77 E-value=2.4 Score=43.05 Aligned_cols=121 Identities=14% Similarity=0.266 Sum_probs=71.7
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEEe---e------ceeEEEEccccEEEece
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIA---N------GGCITIQFVTNVIIHGL 280 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I~---~------G~gItI~~asNVIIrNL 280 (363)
|+.+||.. +..+++|+-+.|+- ++.|.| .+|+||.|.|...+|. + .+.+++ .+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY--~EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIY--REKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEE--EEEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 77888843 22345555556665 466777 5789999998764432 1 123444 5899999999
Q ss_pred EEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCCcc-----------------eEeeeCCcc
Q 017972 281 HVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGL-----------------VDAVMGSTA 342 (363)
Q Consensus 281 ~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~DGL-----------------IDv~~gSt~ 342 (363)
+|.|-.+..+ + - ...++-|+.+. .++.+-+.+|.|.-..|=| +|.+-|.-.
T Consensus 130 T~~Nt~~~~~------~--~---~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~gRqyf~~CyIeG~VDFIFG~a~ 198 (340)
T PLN02176 130 TFKNTYNIAS------N--S---SRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGKGRHYYKRCVISGGIDFIFGYAQ 198 (340)
T ss_pred EEEeCCCccC------C--C---CCCccceEEEEecCccEEEEccEEecccceeEeCCcCEEEEecEEEecccEEecCce
Confidence 9998532100 0 0 01234455554 3677778888887655544 444444444
Q ss_pred EEEEceeEc
Q 017972 343 ITISNNHMT 351 (363)
Q Consensus 343 ITISNn~F~ 351 (363)
.-+.+|.++
T Consensus 199 a~Fe~C~I~ 207 (340)
T PLN02176 199 SIFEGCTLK 207 (340)
T ss_pred EEEeccEEE
Confidence 555666654
No 29
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=93.59 E-value=1.1 Score=47.07 Aligned_cols=121 Identities=12% Similarity=0.130 Sum_probs=73.2
Q ss_pred hHHHHHhcCC-C-eEEEEeeceEEEeceeEEEcCCcEEEeeCCce--EEeeceeEE-EEccccEEEeceEEeecccCCCc
Q 017972 217 TLRHAVIQDK-P-LWIVFKRDMVIQLKQELIVNSFKTIDGRGANV--HIANGGCIT-IQFVTNVIIHGLHVHDCKPTGNA 291 (363)
Q Consensus 217 TLR~AV~q~~-P-r~IVF~~sGtI~Lk~eL~V~SnKTIdGrGA~v--~I~~G~gIt-I~~asNVIIrNL~I~d~~p~~~~ 291 (363)
.|+.|+.+-. | -.|++.. |+- +...|.+.++.||.|..... .|.++.++. -..++||-|++++|++- +.
T Consensus 56 ALQaAIdaAa~gG~tV~Lp~-G~Y-~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGs--G~-- 129 (455)
T TIGR03808 56 ALQRAIDEAARAQTPLALPP-GVY-RTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGG--GI-- 129 (455)
T ss_pred HHHHHHHHhhcCCCEEEECC-Cce-ecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeC--CC--
Confidence 5888876522 2 2344553 222 23678888899999986542 243333333 35799999999999751 11
Q ss_pred ceecCCCcCCCCcCCCCCeEEeeCCceEEEEeeeeeCCC-CcceEee---------------------eCCccEEEEcee
Q 017972 292 MVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCA-DGLVDAV---------------------MGSTAITISNNH 349 (363)
Q Consensus 292 ~iR~sp~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~~-DGLIDv~---------------------~gSt~ITISNn~ 349 (363)
.+. ...-+|.+.+++++-|.+|.+.... -|.. +. ..|....|.+|.
T Consensus 130 -------dl~----~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~-L~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~ 197 (455)
T TIGR03808 130 -------PLP----QRRGLIHCQGGRDVRITDCEITGSGGNGIW-LETVSGDISGNTITQIAVTAIVSFDALGLIVARNT 197 (455)
T ss_pred -------ccc----CCCCEEEEccCCceEEEeeEEEcCCcceEE-EEcCcceEecceEeccccceEEEeccCCCEEECCE
Confidence 111 1223677778888888888887763 4432 11 134577777777
Q ss_pred EcCCce
Q 017972 350 MTHHNE 355 (363)
Q Consensus 350 F~~H~K 355 (363)
+.+...
T Consensus 198 I~g~RD 203 (455)
T TIGR03808 198 IIGAND 203 (455)
T ss_pred EEccCC
Confidence 776544
No 30
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=93.52 E-value=0.11 Score=42.74 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=17.1
Q ss_pred CeEEeeCCc--eEEEEeeeeeCCCCcceEeeeCCccEEEEceeE
Q 017972 309 DAISIFGSS--HIWIDHNSLSHCADGLVDAVMGSTAITISNNHM 350 (363)
Q Consensus 309 DaIsI~gS~--NVWIDHcSfS~~~DGLIDv~~gSt~ITISNn~F 350 (363)
.+|.+.+.. ++.|.+|.+......-+.+..++.+++|++|.|
T Consensus 115 ~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~~v~~n~~ 158 (158)
T PF13229_consen 115 SGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSNCTVTNNTF 158 (158)
T ss_dssp SSCEEEECC--S-EEECEEEECESSEEEE-TT-SS--EEES-E-
T ss_pred eeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCeEEEECCCC
Confidence 444444433 555555555555444444444444455555544
No 31
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=93.20 E-value=0.44 Score=43.65 Aligned_cols=72 Identities=25% Similarity=0.307 Sum_probs=56.2
Q ss_pred eeEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEeeCCceEEEEeeeeeCCCCcceEeeeCCccEE
Q 017972 265 GCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAIT 344 (363)
Q Consensus 265 ~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~~DGLIDv~~gSt~IT 344 (363)
.|+.+..+.++.|++.+|++ ...||.+.+++++-|..|.+..+.+|.. +. .+.+.|
T Consensus 36 ~gi~~~~s~~~~I~~n~i~~----------------------~~~GI~~~~s~~~~i~~n~i~~n~~Gi~-l~-~s~~~~ 91 (236)
T PF05048_consen 36 DGIYVENSDNNTISNNTISN----------------------NRYGIHLMGSSNNTIENNTISNNGYGIY-LM-GSSNNT 91 (236)
T ss_pred CEEEEEEcCCeEEEeeEEEC----------------------CCeEEEEEccCCCEEEeEEEEccCCCEE-EE-cCCCcE
Confidence 35677788888888888864 2578999999999999999999998865 43 445559
Q ss_pred EEceeEcCCceeEEee
Q 017972 345 ISNNHMTHHNEVCLYS 360 (363)
Q Consensus 345 ISNn~F~~H~KvmLlG 360 (363)
|++|.|.+.....++-
T Consensus 92 I~~N~i~~n~~GI~l~ 107 (236)
T PF05048_consen 92 ISNNTISNNGYGIYLY 107 (236)
T ss_pred EECCEecCCCceEEEe
Confidence 9999999877665554
No 32
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=92.90 E-value=1.1 Score=41.20 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=59.0
Q ss_pred cCCcEEEeeCCceEEeeceeEEEEccccEEEeceEEeecccCCCcceecCCCc--CCCCcCCCCCeEEeeCCceEEEEee
Q 017972 247 NSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTH--YGWRTVADGDAISIFGSSHIWIDHN 324 (363)
Q Consensus 247 ~SnKTIdGrGA~v~I~~G~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~--~G~r~~sdgDaIsI~gS~NVWIDHc 324 (363)
..+.+|.+-... ....||.+..++++.|++-.+++... +..+..+... .+-.-....+||.+.++.+..|-++
T Consensus 43 s~~~~I~~n~i~---~~~~GI~~~~s~~~~i~~n~i~~n~~--Gi~l~~s~~~~I~~N~i~~n~~GI~l~~s~~~~I~~N 117 (236)
T PF05048_consen 43 SDNNTISNNTIS---NNRYGIHLMGSSNNTIENNTISNNGY--GIYLMGSSNNTISNNTISNNGYGIYLYGSSNNTISNN 117 (236)
T ss_pred cCCeEEEeeEEE---CCCeEEEEEccCCCEEEeEEEEccCC--CEEEEcCCCcEEECCEecCCCceEEEeeCCceEEECc
Confidence 455666654221 11246888888888888888877541 1122221100 0000111234888888887788888
Q ss_pred eeeCCCCcceEeeeCCccEEEEceeEcCC
Q 017972 325 SLSHCADGLVDAVMGSTAITISNNHMTHH 353 (363)
Q Consensus 325 SfS~~~DGLIDv~~gSt~ITISNn~F~~H 353 (363)
+++....|.. + ..+.+.+|.+|.|.+.
T Consensus 118 ~i~~~~~GI~-l-~~s~~n~I~~N~i~~n 144 (236)
T PF05048_consen 118 TISNNGYGIY-L-SSSSNNTITGNTISNN 144 (236)
T ss_pred EEeCCCEEEE-E-EeCCCCEEECeEEeCC
Confidence 8886666665 3 3457888888888877
No 33
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=92.87 E-value=2 Score=45.95 Aligned_cols=115 Identities=13% Similarity=0.296 Sum_probs=67.8
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEEee-------c------eeEEEEccccEE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIAN-------G------GCITIQFVTNVI 276 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I~~-------G------~gItI~~asNVI 276 (363)
|+.+||.. +..++||+=+.|+- ++.+.| .+|+||.|.|...+|.. | +.+.+ .++|++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGVY--EENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCcee--EEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeE
Confidence 67778753 34466666666754 566777 57999999987643321 2 22334 589999
Q ss_pred EeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCC-----------------cceEeee
Q 017972 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCAD-----------------GLVDAVM 338 (363)
Q Consensus 277 IrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~D-----------------GLIDv~~ 338 (363)
.+||.|+|--+. ..+-|+.+. .+.++-+-+|.|.-..| |.+|.+-
T Consensus 321 a~nitf~Ntag~-----------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 383 (541)
T PLN02416 321 ARDITIENTAGP-----------------EKHQAVALRVNADLVALYRCTINGYQDTLYVHSFRQFYRECDIYGTIDYIF 383 (541)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCccEEEEcceEecccchhccCCCceEEEeeEEeeccceee
Confidence 999999874211 122344433 34556666666655433 3455544
Q ss_pred CCccEEEEceeEc
Q 017972 339 GSTAITISNNHMT 351 (363)
Q Consensus 339 gSt~ITISNn~F~ 351 (363)
|.-..-+.+|.|.
T Consensus 384 G~a~avfq~c~i~ 396 (541)
T PLN02416 384 GNAAVVFQACNIV 396 (541)
T ss_pred ccceEEEeccEEE
Confidence 5545555555553
No 34
>PLN02682 pectinesterase family protein
Probab=92.76 E-value=2.7 Score=43.07 Aligned_cols=103 Identities=14% Similarity=0.212 Sum_probs=59.8
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceE-Ee----------ec--------eeEEEE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IA----------NG--------GCITIQ 270 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~-I~----------~G--------~gItI~ 270 (363)
|+.+||.. +..+++|+=+.|+ .++.|.| .+|+||.|.|..-+ |. +| +.+.+
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~--Y~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v- 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGT--YREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV- 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCce--eeEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence 66777743 2223444444564 4577777 68999999887543 32 11 11223
Q ss_pred ccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCCcce
Q 017972 271 FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLV 334 (363)
Q Consensus 271 ~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~DGLI 334 (363)
.++|++.+||+|+|-.+.. ..| ..++-|+.+. .++++-+.+|.|.-..|=|.
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~---------~~g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy 213 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVP---------PPG---ALGKQAVALRISADTAAFYGCKFLGAQDTLY 213 (369)
T ss_pred ECCCeEEEeeEEEcccccC---------CCC---CCcccEEEEEecCCcEEEEcceEeccccceE
Confidence 5789999999998743210 001 1223455554 46777788888876555444
No 35
>PLN02432 putative pectinesterase
Probab=92.56 E-value=3 Score=41.48 Aligned_cols=96 Identities=14% Similarity=0.277 Sum_probs=59.0
Q ss_pred hHHHHHhc----C-CCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEEe---------eceeEEEEccccEEEec
Q 017972 217 TLRHAVIQ----D-KPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIA---------NGGCITIQFVTNVIIHG 279 (363)
Q Consensus 217 TLR~AV~q----~-~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I~---------~G~gItI~~asNVIIrN 279 (363)
|+.+||.. + +|.+|.+ +.|+ ..+.|.| .+|+||.|.+...++. ..+.+.+ .++|++.+|
T Consensus 25 TIq~Aida~p~~~~~~~~I~I-~~G~--Y~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~n 100 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWV-KPGI--YREKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRF 100 (293)
T ss_pred CHHHHHhhccccCCceEEEEE-eCce--eEEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEe
Confidence 67777743 2 3444444 4554 3567777 6899999987654332 1222333 579999999
Q ss_pred eEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCCcce
Q 017972 280 LHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLV 334 (363)
Q Consensus 280 L~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~DGLI 334 (363)
|.|.|-.+ ..+-|+.+. .+.++-+.+|.|.-..|=|+
T Consensus 101 lt~~Nt~g------------------~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy 138 (293)
T PLN02432 101 LTIQNTFG------------------SSGKAVALRVAGDRAAFYGCRILSYQDTLL 138 (293)
T ss_pred eEEEeCCC------------------CCCceEEEEEcCCcEEEEcceEecccceeE
Confidence 99987422 123455544 46777778888876655554
No 36
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=91.84 E-value=1 Score=47.36 Aligned_cols=89 Identities=20% Similarity=0.293 Sum_probs=62.3
Q ss_pred EEEEccccEEEeceEEeecccCCCcceecCC----------------CcCCCCcCCCCCeEEeeCCceEEEEeeeeeCCC
Q 017972 267 ITIQFVTNVIIHGLHVHDCKPTGNAMVRSSP----------------THYGWRTVADGDAISIFGSSHIWIDHNSLSHCA 330 (363)
Q Consensus 267 ItI~~asNVIIrNL~I~d~~p~~~~~iR~sp----------------~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~~ 330 (363)
|++.++++..|++=+|.+++-.+=.+.|.+. ...|. +..-|+||+++.+.++.|..+.+++|.
T Consensus 183 I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg-~~~~GNGI~~~~a~~v~V~gN~I~~~r 261 (455)
T TIGR03808 183 IVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGG-SGQYGNAINAFRAGNVIVRGNRIRNCD 261 (455)
T ss_pred EEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCC-cCCccccEEEEccCCeEEECCEEeccc
Confidence 6666777888888888775432111122100 00111 234689999999999999999999999
Q ss_pred -CcceEeeeCCccEEEEceeEcCCceeEE
Q 017972 331 -DGLVDAVMGSTAITISNNHMTHHNEVCL 358 (363)
Q Consensus 331 -DGLIDv~~gSt~ITISNn~F~~H~KvmL 358 (363)
||.. ...|+++.|..|.|++-.+|.|
T Consensus 262 ~dgI~--~nsss~~~i~~N~~~~~R~~al 288 (455)
T TIGR03808 262 YSAVR--GNSASNIQITGNSVSDVREVAL 288 (455)
T ss_pred cceEE--EEcccCcEEECcEeeeeeeeEE
Confidence 9987 3568999999999998776544
No 37
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=91.51 E-value=3.8 Score=43.92 Aligned_cols=97 Identities=13% Similarity=0.210 Sum_probs=58.1
Q ss_pred hHHHHHhc-----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEE-ee------ce------eEEEEccccE
Q 017972 217 TLRHAVIQ-----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHI-AN------GG------CITIQFVTNV 275 (363)
Q Consensus 217 TLR~AV~q-----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I-~~------G~------gItI~~asNV 275 (363)
|+.+||.. ...+++|+=+.|+ .++.+.| .+|+||.|.|...+| .. |. .+. ..++|+
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~-v~~~~F 315 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGT--YHENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVA-AMGDGF 315 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCe--eEEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEE-EEcCCe
Confidence 67778852 2235555555676 4566777 579999998876443 21 11 122 358999
Q ss_pred EEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCCcc
Q 017972 276 IIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGL 333 (363)
Q Consensus 276 IIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~DGL 333 (363)
+.+||.|+|-.+. ..+-|+.+. .++..-+.+|.|.-..|=|
T Consensus 316 ~a~nitf~Ntag~-----------------~~~QAVALrv~gDr~~fy~C~f~GyQDTL 357 (529)
T PLN02170 316 IARDITFVNSAGP-----------------NSEQAVALRVGSDKSVVYRCSVEGYQDSL 357 (529)
T ss_pred EEEeeEEEecCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCCcc
Confidence 9999999874210 112344443 3566667777776544433
No 38
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=91.41 E-value=4 Score=43.73 Aligned_cols=95 Identities=18% Similarity=0.234 Sum_probs=55.2
Q ss_pred hHHHHHhc------CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceE-Eee------ce------eEEEEcccc
Q 017972 217 TLRHAVIQ------DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IAN------GG------CITIQFVTN 274 (363)
Q Consensus 217 TLR~AV~q------~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~-I~~------G~------gItI~~asN 274 (363)
|..+||.. +..+++|+=+.|+- ++.+.| .+|+|+.|.|...+ |.+ |. .+.+ .+++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v-~~~~ 313 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGIY--QENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGI-EGLH 313 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCEe--EEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEE-ECCC
Confidence 77788853 12244444445664 466667 57999999987643 321 11 1222 5899
Q ss_pred EEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCC
Q 017972 275 VIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCAD 331 (363)
Q Consensus 275 VIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~D 331 (363)
++.+||.|.|--+. ..+-|+.+. .+...-+.+|.|.-..|
T Consensus 314 F~a~nitf~Ntag~-----------------~~~QAVAlrv~~Dr~~f~~c~~~G~QD 354 (539)
T PLN02995 314 FIAKGITFRNTAGP-----------------AKGQAVALRSSSDLSIFYKCSIEGYQD 354 (539)
T ss_pred eEEEeeEEEeCCCC-----------------CCCceEEEEEcCCceeEEcceEecccc
Confidence 99999999874210 123444444 35556666666655444
No 39
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=91.01 E-value=4.9 Score=42.99 Aligned_cols=115 Identities=14% Similarity=0.226 Sum_probs=64.7
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEEe-------ece------eEEEEccccEE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIA-------NGG------CITIQFVTNVI 276 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I~-------~G~------gItI~~asNVI 276 (363)
|+.+||.. +..+++|+=+.|+- ++.+.| .+|+||.|.|...++. +|. .+. ..+++++
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~-v~~~~F~ 296 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVY--LENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFA-VSGRGFI 296 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCcee--EEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEE-EECCCeE
Confidence 67777743 22244444445644 566777 4689999988754322 221 122 2589999
Q ss_pred EeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCC-----------------cceEeee
Q 017972 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCAD-----------------GLVDAVM 338 (363)
Q Consensus 277 IrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~D-----------------GLIDv~~ 338 (363)
.+||.|+|-.+. ..+-|+.+. .+...-+.+|.|.-..| |.+|.+-
T Consensus 297 a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 359 (520)
T PLN02201 297 ARDITFQNTAGP-----------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTMRQFYRECRITGTVDFIF 359 (520)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCCCEEEEeeEEeecccEEe
Confidence 999999874211 123344443 34566666666655433 3445544
Q ss_pred CCccEEEEceeEc
Q 017972 339 GSTAITISNNHMT 351 (363)
Q Consensus 339 gSt~ITISNn~F~ 351 (363)
|.-..-+.+|.|.
T Consensus 360 G~a~avf~~C~i~ 372 (520)
T PLN02201 360 GDATAVFQNCQIL 372 (520)
T ss_pred cCceEEEEccEEE
Confidence 4445555555553
No 40
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=90.55 E-value=5.7 Score=42.50 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=67.9
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEEee-------ce------eEEEEccccEE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIAN-------GG------CITIQFVTNVI 276 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I~~-------G~------gItI~~asNVI 276 (363)
|+.+||.+ +..+++|+=+.|+ .++.|.| .+|+|+.|.|...+|.. |. .+. -.+++++
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~-v~g~gF~ 287 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGV--YDEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVA-SNGDGFI 287 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCe--eEEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEE-EEcCCeE
Confidence 67778743 2224444444564 4567777 57999999987644321 11 111 2578999
Q ss_pred EeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCC-----------------cceEeee
Q 017972 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCAD-----------------GLVDAVM 338 (363)
Q Consensus 277 IrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~D-----------------GLIDv~~ 338 (363)
.+||.|+|-.+ ...+-|+.+. ++...-+.+|.|.-..| |.+|.+-
T Consensus 288 A~nitf~Ntag-----------------~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIF 350 (509)
T PLN02488 288 GIDMCFRNTAG-----------------PAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFIC 350 (509)
T ss_pred EEeeEEEECCC-----------------CCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEe
Confidence 99999987321 0124555555 46677777777765444 4455555
Q ss_pred CCccEEEEceeEc
Q 017972 339 GSTAITISNNHMT 351 (363)
Q Consensus 339 gSt~ITISNn~F~ 351 (363)
|.-.+-+++|.|.
T Consensus 351 G~a~avFq~C~I~ 363 (509)
T PLN02488 351 GNAAAVFQFCQIV 363 (509)
T ss_pred cceEEEEEccEEE
Confidence 5555556666664
No 41
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=90.55 E-value=5 Score=43.10 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=70.1
Q ss_pred hHHHHHhc-----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEEe--------ec------eeEEEEcccc
Q 017972 217 TLRHAVIQ-----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIA--------NG------GCITIQFVTN 274 (363)
Q Consensus 217 TLR~AV~q-----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I~--------~G------~gItI~~asN 274 (363)
|+.+||.. .+.+.||+=+.|+- ++.+.| ..|+||.|.|..-++. +| +.+.+ .+++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY--~E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v-~~~~ 331 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVY--EETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGV-LGDG 331 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceE--EeeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEE-EcCC
Confidence 67777742 12344555556654 466666 6789999988754332 12 11223 5789
Q ss_pred EEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCC-----------------cceEe
Q 017972 275 VIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCAD-----------------GLVDA 336 (363)
Q Consensus 275 VIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~D-----------------GLIDv 336 (363)
++.+||+|.|-- + ...+-|+.+. .+..+-+.+|.|.-..| |.+|.
T Consensus 332 f~a~~it~~Nta--g---------------~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDF 394 (553)
T PLN02708 332 FMARDLTIQNTA--G---------------PDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDF 394 (553)
T ss_pred eEEEeeEEEcCC--C---------------CCCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCE
Confidence 999999998731 1 0123555555 46777788888765433 45666
Q ss_pred eeCCccEEEEceeEc
Q 017972 337 VMGSTAITISNNHMT 351 (363)
Q Consensus 337 ~~gSt~ITISNn~F~ 351 (363)
+-|.-.+-+.||.+.
T Consensus 395 IFG~a~avfq~c~i~ 409 (553)
T PLN02708 395 IFGNSAAVFQDCAIL 409 (553)
T ss_pred EecCceEEEEccEEE
Confidence 556666666777665
No 42
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=90.33 E-value=3.3 Score=44.45 Aligned_cols=95 Identities=14% Similarity=0.269 Sum_probs=56.9
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEEe-------ecee------EEEEccccEE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIA-------NGGC------ITIQFVTNVI 276 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I~-------~G~g------ItI~~asNVI 276 (363)
|+.+||.. +..++||+=+.|+ .++.+.| .+|+|+.|.|...+|. +|.+ +. ..+++++
T Consensus 250 TIq~Ai~a~P~~~~~r~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~-v~~~~F~ 326 (548)
T PLN02301 250 TVKEAVASAPDNSKTRYVIYVKKGT--YKENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVA-AVGDGFI 326 (548)
T ss_pred cHHHHHHhhhhcCCceEEEEEeCce--eeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEE-EECCceE
Confidence 67777753 2335555555676 4567777 5799999998764432 2211 22 2579999
Q ss_pred EeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCC
Q 017972 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCAD 331 (363)
Q Consensus 277 IrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~D 331 (363)
.+||.|+|-.. . ..+-|+.+. ++...-+.+|.|.-..|
T Consensus 327 a~nitf~Ntag--------------~---~~~QAVAlrv~~D~~~fy~C~~~G~QD 365 (548)
T PLN02301 327 AQDIWFQNTAG--------------P---EKHQAVALRVSADQAVINRCRIDAYQD 365 (548)
T ss_pred EEeeEEEECCC--------------C---CCCceEEEEecCCcEEEEeeeeeeccc
Confidence 99999987321 0 122344443 35666677777765444
No 43
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=90.28 E-value=5.9 Score=42.89 Aligned_cols=115 Identities=15% Similarity=0.235 Sum_probs=69.3
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEEe-------ec------eeEEEEccccEE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIA-------NG------GCITIQFVTNVI 276 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I~-------~G------~gItI~~asNVI 276 (363)
|+.+||.. +..++||+=+.|+ ..+.+.| ..|+|+.|.|..-+|. +| +.+. ..+++++
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~Gv--Y~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~-v~~~~F~ 365 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGV--YRENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVA-AVGERFL 365 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCce--eEEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEE-EECCCeE
Confidence 67777753 2334555555564 3566777 4688999888764432 12 1122 2578999
Q ss_pred EeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCC-----------------CcceEeee
Q 017972 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCA-----------------DGLVDAVM 338 (363)
Q Consensus 277 IrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~-----------------DGLIDv~~ 338 (363)
.+||.|+|-.. . ..+-|+.+. ++...-+.+|.|.-.. .|.+|.+-
T Consensus 366 a~~itf~Ntag--------------~---~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIF 428 (587)
T PLN02313 366 ARDITFQNTAG--------------P---SKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIF 428 (587)
T ss_pred EEeeEEEeCCC--------------C---CCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceec
Confidence 99999987421 1 123444444 4667777777776533 34556665
Q ss_pred CCccEEEEceeEc
Q 017972 339 GSTAITISNNHMT 351 (363)
Q Consensus 339 gSt~ITISNn~F~ 351 (363)
|.-.+-++||.+.
T Consensus 429 G~a~avfq~c~i~ 441 (587)
T PLN02313 429 GNAAAVLQDCDIN 441 (587)
T ss_pred cceeEEEEccEEE
Confidence 6666667777765
No 44
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=90.26 E-value=4.9 Score=43.09 Aligned_cols=116 Identities=16% Similarity=0.229 Sum_probs=67.9
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEE-e------ecee-----EEEEccccEEE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHI-A------NGGC-----ITIQFVTNVII 277 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I-~------~G~g-----ItI~~asNVII 277 (363)
|+.+||.. +..+++||=+.|+- ++.+.| .+|+||.|.|..-++ . +|.+ -....+++++.
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY--~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v~~~~F~a 323 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVY--KENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAVSGRGFIA 323 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCee--eEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEEEcCCeEE
Confidence 67777753 23345555555644 466666 579999998875433 2 1111 01136899999
Q ss_pred eceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCC-----------------cceEeeeC
Q 017972 278 HGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCAD-----------------GLVDAVMG 339 (363)
Q Consensus 278 rNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~D-----------------GLIDv~~g 339 (363)
+||.|+|--. . .++-|+.+. .+.++-+.+|.|.-..| |.+|.+-|
T Consensus 324 ~nit~~Ntag--------------~---~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~rqyy~~C~I~GtVDFIFG 386 (537)
T PLN02506 324 RDITFRNTAG--------------P---QNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEIYGTIDFIFG 386 (537)
T ss_pred EeeEEEeCCC--------------C---CCCceEEEEecCCcEEEEcceeecccccceecCCceEEEeeEEecccceEcc
Confidence 9999987321 0 123444444 36777777887765444 44555555
Q ss_pred CccEEEEceeEc
Q 017972 340 STAITISNNHMT 351 (363)
Q Consensus 340 St~ITISNn~F~ 351 (363)
.-..-+.||.|.
T Consensus 387 ~a~avfq~C~i~ 398 (537)
T PLN02506 387 NGAAVLQNCKIY 398 (537)
T ss_pred CceeEEeccEEE
Confidence 555566666664
No 45
>PLN02497 probable pectinesterase
Probab=90.12 E-value=8.7 Score=38.93 Aligned_cols=105 Identities=12% Similarity=0.219 Sum_probs=61.7
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceE-Ee--e------ceeEEEEccccEEEece
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IA--N------GGCITIQFVTNVIIHGL 280 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~-I~--~------G~gItI~~asNVIIrNL 280 (363)
|+.+||.. +..+++++=+.|+ .++.|.| .+|+|+.|.|...+ |. + -+.+++ .++|++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~--Y~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGL--YREKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcE--EEEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence 67777743 2233444444554 4577777 58999999987533 22 1 112333 5899999999
Q ss_pred EEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCCcce
Q 017972 281 HVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLV 334 (363)
Q Consensus 281 ~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~DGLI 334 (363)
.|.|-.+.. . .+ ....++-|+.+. .+.++-+.+|.|.-..|=|.
T Consensus 123 T~~Nt~~~~--------~-~~-~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy 167 (331)
T PLN02497 123 TFANSYNFP--------S-KG-NKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLW 167 (331)
T ss_pred EEEeCCCCc--------c-cc-CCCCCcceEEEEecCCcEEEEeeEEecccccee
Confidence 998743210 0 00 001123466654 47788888999987666554
No 46
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=89.92 E-value=5.6 Score=42.83 Aligned_cols=115 Identities=16% Similarity=0.268 Sum_probs=67.7
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEEee-------c------eeEEEEccccEE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIAN-------G------GCITIQFVTNVI 276 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I~~-------G------~gItI~~asNVI 276 (363)
|..+||.. +..++||+=+.|+- .+.+.| ..|+||.|.|..-+|.. | +.+.+ .+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY--~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v-~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVY--FENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV-FGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCce--EEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE-ECCCeE
Confidence 66677743 22244444445654 466767 46889999887543321 2 11222 578999
Q ss_pred EeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCC-----------------cceEeee
Q 017972 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCAD-----------------GLVDAVM 338 (363)
Q Consensus 277 IrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~D-----------------GLIDv~~ 338 (363)
.+||.|+|--. ..++-|+.+. .+...-+.+|.|.-..| |.+|.+-
T Consensus 349 a~~itf~Ntag-----------------~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIF 411 (565)
T PLN02468 349 ARDMGFRNTAG-----------------PIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFIF 411 (565)
T ss_pred EEEEEEEeCCC-----------------CCCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEEecccceee
Confidence 99999987321 0123455554 46777778887765443 4456555
Q ss_pred CCccEEEEceeEc
Q 017972 339 GSTAITISNNHMT 351 (363)
Q Consensus 339 gSt~ITISNn~F~ 351 (363)
|.-.+-++||.|.
T Consensus 412 G~a~avfq~c~i~ 424 (565)
T PLN02468 412 GNSAVVFQNCNIL 424 (565)
T ss_pred ccceEEEeccEEE
Confidence 5555666666663
No 47
>PLN02314 pectinesterase
Probab=89.80 E-value=5.8 Score=42.89 Aligned_cols=115 Identities=18% Similarity=0.294 Sum_probs=68.0
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEEee-------ce------eEEEEccccEE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIAN-------GG------CITIQFVTNVI 276 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I~~-------G~------gItI~~asNVI 276 (363)
|+.+||.. +..++||+=+.|+- .+.+.| ..|+|+.|.|..-+|.. |. .+. ..+++++
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~-v~~~~F~ 368 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGTY--VENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFA-AAGKGFI 368 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCceE--EEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEE-EEcCCeE
Confidence 67778853 23355555556663 466666 56889999887543321 11 122 2689999
Q ss_pred EeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCC-----------------cceEeee
Q 017972 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCAD-----------------GLVDAVM 338 (363)
Q Consensus 277 IrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~D-----------------GLIDv~~ 338 (363)
.+||.|+|--+ ...+-|+.+. ++...-+.+|.|.-..| |.+|.+-
T Consensus 369 a~~itf~Ntag-----------------~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIF 431 (586)
T PLN02314 369 AKDMGFINTAG-----------------AAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIF 431 (586)
T ss_pred EEeeEEEECCC-----------------CCCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEEEeccceec
Confidence 99999987421 0123455554 46667777777765444 3445555
Q ss_pred CCccEEEEceeEc
Q 017972 339 GSTAITISNNHMT 351 (363)
Q Consensus 339 gSt~ITISNn~F~ 351 (363)
|.-..-+.||.|.
T Consensus 432 G~a~avf~~c~i~ 444 (586)
T PLN02314 432 GNAAVVFQNCNIQ 444 (586)
T ss_pred cCceeeeeccEEE
Confidence 5555556666653
No 48
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=89.65 E-value=7.7 Score=37.77 Aligned_cols=98 Identities=23% Similarity=0.289 Sum_probs=54.5
Q ss_pred hHHHHHhcCCCeEEEEeeceEEEec----eeEEEcCCcEEEeeCCc-----eEEe--------ece-------eEEEEcc
Q 017972 217 TLRHAVIQDKPLWIVFKRDMVIQLK----QELIVNSFKTIDGRGAN-----VHIA--------NGG-------CITIQFV 272 (363)
Q Consensus 217 TLR~AV~q~~Pr~IVF~~sGtI~Lk----~eL~V~SnKTIdGrGA~-----v~I~--------~G~-------gItI~~a 272 (363)
|+.+|+.+-.|-..|.=..|+-.-. -+|.+.+.+||.|.... +.+. .|. .++|...
T Consensus 17 Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~~ 96 (246)
T PF07602_consen 17 TITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIILA 96 (246)
T ss_pred HHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEec
Confidence 7788887644433222234554332 24677777787774332 1111 111 1455567
Q ss_pred ccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEeeCCceEEEEeeeeeCC-CCcc
Q 017972 273 TNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHC-ADGL 333 (363)
Q Consensus 273 sNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~-~DGL 333 (363)
++..|++++|++-.+ ..+-||.|.++ +.-|..|+|..+ .+|.
T Consensus 97 ~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI 139 (246)
T PF07602_consen 97 NNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGI 139 (246)
T ss_pred CCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccE
Confidence 788888888876321 13556667666 666667777764 4443
No 49
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=89.58 E-value=7.2 Score=41.89 Aligned_cols=96 Identities=16% Similarity=0.212 Sum_probs=56.0
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceE-Ee------ec------eeEEEEccccEE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IA------NG------GCITIQFVTNVI 276 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~-I~------~G------~gItI~~asNVI 276 (363)
|+.+||.. +..+++|+=+.|+-+ +.+.| .+|+||.|.|..-+ |. +| +.+. ..++|++
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~-v~a~~F~ 308 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVG-VKGKGFI 308 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEE-EECCCEE
Confidence 67778753 222444444456554 66666 57889999886533 22 11 1122 2579999
Q ss_pred EeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCCc
Q 017972 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADG 332 (363)
Q Consensus 277 IrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~DG 332 (363)
.+||.|.|--+. ..+-|+.+. .+..+-+.+|.|.-..|=
T Consensus 309 a~nitf~Ntag~-----------------~~~QAVAlrv~~Dra~fy~C~f~G~QDT 348 (530)
T PLN02933 309 AKDISFVNYAGP-----------------AKHQAVALRSGSDHSAFYRCEFDGYQDT 348 (530)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEEeEEEecccc
Confidence 999999873210 123455554 466677777777654443
No 50
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=89.13 E-value=8.3 Score=41.90 Aligned_cols=95 Identities=13% Similarity=0.183 Sum_probs=55.5
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEEee-------ce------eEEEEccccEE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIAN-------GG------CITIQFVTNVI 276 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I~~-------G~------gItI~~asNVI 276 (363)
|+.+||.. +..+++|+=+.|+- ++.+.| .+|+||.|.|...++.. |. .+.+ .+++++
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 375 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIY--DETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVA-LGEGFM 375 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCee--EEEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEE-EcCCEE
Confidence 67778853 22345554445644 466777 46899999987644321 11 1222 689999
Q ss_pred EeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCC
Q 017972 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCAD 331 (363)
Q Consensus 277 IrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~D 331 (363)
.+||.|+|--+. ..+-|+.+. .+...-+.+|.|.-..|
T Consensus 376 a~nitf~Ntag~-----------------~~~QAVAl~v~~Dr~~f~~c~~~G~QD 414 (596)
T PLN02745 376 AKSMGFRNTAGP-----------------EKHQAVAIRVQSDRSIFLNCRFEGYQD 414 (596)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeEEeeccc
Confidence 999999874210 122344443 35666666666665444
No 51
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=88.81 E-value=7.1 Score=41.86 Aligned_cols=115 Identities=16% Similarity=0.254 Sum_probs=68.7
Q ss_pred hHHHHHhc---CC----CeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEEe-------ec------eeEEEEccc
Q 017972 217 TLRHAVIQ---DK----PLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIA-------NG------GCITIQFVT 273 (363)
Q Consensus 217 TLR~AV~q---~~----Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I~-------~G------~gItI~~as 273 (363)
|+.+||.. .. -++||+=+.|+- ++.|.| ..|+||.|.|..-+|. +| +.+.+ .++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYY--EEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeee--EEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECC
Confidence 67778753 11 145555556664 466776 5799999988764332 22 22223 579
Q ss_pred cEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCC-----------------cceE
Q 017972 274 NVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCAD-----------------GLVD 335 (363)
Q Consensus 274 NVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~D-----------------GLID 335 (363)
++|.+||.|+|--. . ..+-|+.+. .+...-+.+|.|.-..| |.+|
T Consensus 314 ~F~a~~it~~Ntag--------------~---~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVD 376 (538)
T PLN03043 314 RFVAVDVTFRNTAG--------------P---EKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVD 376 (538)
T ss_pred CEEEEeeEEEECCC--------------C---CCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccc
Confidence 99999999987321 1 123455554 45667777777765444 4455
Q ss_pred eeeCCccEEEEceeEc
Q 017972 336 AVMGSTAITISNNHMT 351 (363)
Q Consensus 336 v~~gSt~ITISNn~F~ 351 (363)
.+-|.-..-++||.|.
T Consensus 377 FIFG~a~avfq~c~i~ 392 (538)
T PLN03043 377 FIFGNAAAIFQNCNLY 392 (538)
T ss_pred eEeecceeeeeccEEE
Confidence 5555555556666653
No 52
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=88.69 E-value=10 Score=41.01 Aligned_cols=115 Identities=14% Similarity=0.246 Sum_probs=66.2
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceE-Eee------c-e------eEEEEccccE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IAN------G-G------CITIQFVTNV 275 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~-I~~------G-~------gItI~~asNV 275 (363)
|+.+||.. +..+++|+=+.|+- ++.+.| .+|+|+.|.|..-+ |.. | . .+. -.++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~-v~~~~F 349 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGVY--NEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVA-INGDHF 349 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcee--EEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEE-EEcCCE
Confidence 77778853 22344444445644 566777 47899999887543 321 1 0 112 258899
Q ss_pred EEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCC-----------------cceEee
Q 017972 276 IIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCAD-----------------GLVDAV 337 (363)
Q Consensus 276 IIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~D-----------------GLIDv~ 337 (363)
+.+||.|+|--+. .++-|+-+. .++..-+.+|.|.-..| |.+|.+
T Consensus 350 ~a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFI 412 (572)
T PLN02990 350 TAKNIGFENTAGP-----------------EGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFI 412 (572)
T ss_pred EEEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceE
Confidence 9999999874210 123455554 45666677777655333 445554
Q ss_pred eCCccEEEEceeEc
Q 017972 338 MGSTAITISNNHMT 351 (363)
Q Consensus 338 ~gSt~ITISNn~F~ 351 (363)
-|.-..-+.+|.|.
T Consensus 413 FG~a~avf~~C~i~ 426 (572)
T PLN02990 413 FGDAKVVLQNCNIV 426 (572)
T ss_pred ccCceEEEEccEEE
Confidence 45444555555553
No 53
>PLN02665 pectinesterase family protein
Probab=88.56 E-value=12 Score=38.48 Aligned_cols=104 Identities=12% Similarity=0.179 Sum_probs=62.7
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceE-Eee-----------ceeEEEEccccEEE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IAN-----------GGCITIQFVTNVII 277 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~-I~~-----------G~gItI~~asNVII 277 (363)
|+.+||.. +..++|++=+.|+ .++.|.| .+|+|+.|.+.... |.. -+.+.+ .++|++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGE--YNEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcE--EEEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeEE
Confidence 67778753 2335555555675 4577777 57889999876533 321 122323 5899999
Q ss_pred eceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCCcceE
Q 017972 278 HGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLVD 335 (363)
Q Consensus 278 rNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~DGLID 335 (363)
+||.|+|--|... + ...++-|+.+. .+++.-+.+|.|.-..|=|.|
T Consensus 159 ~nitf~Nta~~~~----------~--~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~ 205 (366)
T PLN02665 159 ANIIIKNSAPRPD----------G--KRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCD 205 (366)
T ss_pred EeeEEEeCCCCcC----------C--CCCCcceEEEEEcCCcEEEEcceeccccceeEe
Confidence 9999998543110 0 01122344443 357788888888876666654
No 54
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=88.50 E-value=8.5 Score=42.43 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=41.6
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEEe-------ece------eEEEEccccEE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIA-------NGG------CITIQFVTNVI 276 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I~-------~G~------gItI~~asNVI 276 (363)
|+.+||.. +..++||+=+.|+ .++.+.| ..|+|+.|.|...+|. +|. .+.+ .+++++
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v-~g~~F~ 340 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGI--YKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAI-VGDHFI 340 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCc--eEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEE-ECCCeE
Confidence 67778853 2234444444564 4566777 4688889988764432 221 1222 588999
Q ss_pred EeceEEeec
Q 017972 277 IHGLHVHDC 285 (363)
Q Consensus 277 IrNL~I~d~ 285 (363)
.+||.|+|-
T Consensus 341 a~nitf~Nt 349 (670)
T PLN02217 341 AKNIGFENT 349 (670)
T ss_pred EEeeEEEeC
Confidence 999999874
No 55
>PLN02634 probable pectinesterase
Probab=88.31 E-value=16 Score=37.62 Aligned_cols=103 Identities=14% Similarity=0.249 Sum_probs=60.3
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEEee-----------c--------eeEEEE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIAN-----------G--------GCITIQ 270 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I~~-----------G--------~gItI~ 270 (363)
|+.+||.. +..+++|+=+.|+ ..+.|.| .+|+||.|.|...++.. | +.+++
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGF--YREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCce--EEEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 46666642 2223444444565 4566777 57899999887654421 1 11223
Q ss_pred ccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCCcce
Q 017972 271 FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLV 334 (363)
Q Consensus 271 ~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~DGLI 334 (363)
.++|++.+||+|.|-.+.. ..| ..++-|+.+. .+++.-+.+|.|.-..|=|.
T Consensus 147 ~a~~F~a~niTf~Nta~~~---------~~g---~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~ 199 (359)
T PLN02634 147 YANYFTARNISFKNTAPAP---------MPG---MQGWQAVAFRISGDKAFFFGCGFYGAQDTLC 199 (359)
T ss_pred ECCCeEEEeCeEEeCCccC---------CCC---CCCCceEEEEecCCcEEEEEeEEecccceee
Confidence 5789999999998853310 001 1234455544 36678888888876666554
No 56
>PLN02304 probable pectinesterase
Probab=88.20 E-value=16 Score=37.83 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=62.6
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEE-ee--c----------eeEEEEccccEE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHI-AN--G----------GCITIQFVTNVI 276 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I-~~--G----------~gItI~~asNVI 276 (363)
|+.+||.. +..+++|+=+.|+ ..+.|.| .+|+||.|.|...++ .. . +.+.+ .++|++
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v-~a~~F~ 165 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGI--YYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQV-FASNFI 165 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeE--eEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEE-ECCCeE
Confidence 77888853 2234444444564 4577777 689999999876432 20 0 11222 579999
Q ss_pred EeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCCcce
Q 017972 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLV 334 (363)
Q Consensus 277 IrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~DGLI 334 (363)
.+||.|+|-.+.. .+ +..++-|+.+. .+..+-+.+|.|.-..|=|.
T Consensus 166 a~nITf~Nta~~~------~~------g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy 212 (379)
T PLN02304 166 AKNISFMNVAPIP------KP------GDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLH 212 (379)
T ss_pred EEeeEEEecCCCC------CC------CCCCccEEEEEecCCcEEEEeceEecccceeE
Confidence 9999999853310 00 01233455554 46778888888877666554
No 57
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=88.12 E-value=4.3 Score=41.86 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=68.6
Q ss_pred eEEEcCCcEEEeeCCceEEeeceeEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEeeCCceEEEE
Q 017972 243 ELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWID 322 (363)
Q Consensus 243 eL~V~SnKTIdGrGA~v~I~~G~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~gS~NVWID 322 (363)
-+.+..+.|-++.-.+--+....||.+.++..+.|..-+|.+... . |....|+||++.++..+-|=
T Consensus 99 gI~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~-----~---------r~~~rGnGI~vyNa~~a~V~ 164 (408)
T COG3420 99 GIFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLAD-----L---------RVAERGNGIYVYNAPGALVV 164 (408)
T ss_pred eEEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccc-----c---------chhhccCceEEEcCCCcEEE
Confidence 344555555555333323445678999999999999999975321 1 22346899999999999999
Q ss_pred eeeeeCCCCcceEeeeCCccEEEEceeEcC
Q 017972 323 HNSLSHCADGLVDAVMGSTAITISNNHMTH 352 (363)
Q Consensus 323 HcSfS~~~DGLIDv~~gSt~ITISNn~F~~ 352 (363)
-+.++...||... ..|+.-+++.|.|++
T Consensus 165 ~ndisy~rDgIy~--~~S~~~~~~gnr~~~ 192 (408)
T COG3420 165 GNDISYGRDGIYS--DTSQHNVFKGNRFRD 192 (408)
T ss_pred cCccccccceEEE--cccccceecccchhh
Confidence 9999999999872 456777888888775
No 58
>PLN02773 pectinesterase
Probab=88.00 E-value=14 Score=37.10 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=40.7
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceE-Eee----------------c------ee
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IAN----------------G------GC 266 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~-I~~----------------G------~g 266 (363)
|+..||.. +..+++||=+.|+ ..+.|.| ..|+||.|.+...+ |.. | +.
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~--Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGV--YRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCce--EEEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 67777743 2224444444564 4577777 46899999876433 220 1 12
Q ss_pred EEEEccccEEEeceEEeec
Q 017972 267 ITIQFVTNVIIHGLHVHDC 285 (363)
Q Consensus 267 ItI~~asNVIIrNL~I~d~ 285 (363)
+.+ .++|++.+||+|.|-
T Consensus 97 v~v-~a~~f~a~nlT~~Nt 114 (317)
T PLN02773 97 VIV-EGEDFIAENITFENS 114 (317)
T ss_pred EEE-ECCCeEEEeeEEEeC
Confidence 223 579999999999874
No 59
>PLN02916 pectinesterase family protein
Probab=87.81 E-value=12 Score=40.05 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=41.6
Q ss_pred hHHHHHhc-------CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEEe-------ece------eEEEEccc
Q 017972 217 TLRHAVIQ-------DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIA-------NGG------CITIQFVT 273 (363)
Q Consensus 217 TLR~AV~q-------~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I~-------~G~------gItI~~as 273 (363)
|+.+||.. +..+++|+=+.|+- ++.+.| .+|+||.|.|..-+|. +|. .+. ..++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~-v~~~ 277 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVY--NEKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFG-VSGD 277 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEE-EECC
Confidence 67777742 13355555555644 466777 4688999988764432 121 122 2578
Q ss_pred cEEEeceEEeec
Q 017972 274 NVIIHGLHVHDC 285 (363)
Q Consensus 274 NVIIrNL~I~d~ 285 (363)
+++.+||.|.|-
T Consensus 278 ~F~A~nitf~Nt 289 (502)
T PLN02916 278 GFWARDITFENT 289 (502)
T ss_pred CEEEEeeEEEeC
Confidence 999999999874
No 60
>PLN02671 pectinesterase
Probab=86.90 E-value=19 Score=37.00 Aligned_cols=102 Identities=17% Similarity=0.247 Sum_probs=60.1
Q ss_pred hHHHHHhc-----CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCC---ceEEee----------c--------eeE
Q 017972 217 TLRHAVIQ-----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGA---NVHIAN----------G--------GCI 267 (363)
Q Consensus 217 TLR~AV~q-----~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA---~v~I~~----------G--------~gI 267 (363)
|+.+||.. ++|.+|.+ +.|+ ..+.|.| .+|+||.|.|. +..|.. | +.+
T Consensus 73 TIQ~AIdavP~~~~~~~~I~I-k~Gv--Y~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv 149 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYI-LPGI--YREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASV 149 (359)
T ss_pred CHHHHHHhchhcCCccEEEEE-eCce--EEEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEE
Confidence 56667642 23444444 4564 4577777 68899999874 333431 1 112
Q ss_pred EEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCCcceE
Q 017972 268 TIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLVD 335 (363)
Q Consensus 268 tI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~DGLID 335 (363)
++ .++|++.+||+|+|-.+.. + | ..++-|+.+. .+.++-+.+|.|.-..|=|++
T Consensus 150 ~v-~a~~F~a~nitfeNt~~~~-------~---g---~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~ 204 (359)
T PLN02671 150 TI-ESDYFCATGITFENTVVAE-------P---G---GQGMQAVALRISGDKAFFYKVRVLGAQDTLLD 204 (359)
T ss_pred EE-ECCceEEEeeEEEcCCCCC-------C---C---CCCccEEEEEEcCccEEEEcceEeccccccEe
Confidence 22 5789999999998742210 0 0 1123444444 367888899998877666653
No 61
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=86.67 E-value=15 Score=39.83 Aligned_cols=115 Identities=17% Similarity=0.276 Sum_probs=66.6
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEece-eEEE---cCCcEEEeeCCceEEe-ece------------eEEEEccccE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQ-ELIV---NSFKTIDGRGANVHIA-NGG------------CITIQFVTNV 275 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~-eL~V---~SnKTIdGrGA~v~I~-~G~------------gItI~~asNV 275 (363)
|+.+||.. +..++||+=+.|+-+ + .|.| .+|+|+.|.|...+|. .+. .+. ..++|+
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~-v~~~~F 362 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYE--ENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFA-ATGAGF 362 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEE--EEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEE-EEcCCE
Confidence 67778853 233555555566653 4 3777 5789999988764432 211 111 258999
Q ss_pred EEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCC-----------------cceEee
Q 017972 276 IIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCAD-----------------GLVDAV 337 (363)
Q Consensus 276 IIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~D-----------------GLIDv~ 337 (363)
+.+||.|+|--+. ..+-|+.+. .+.+.-+.+|.|.-..| |.+|.+
T Consensus 363 ~a~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFI 425 (587)
T PLN02484 363 IARDMTFENWAGP-----------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFI 425 (587)
T ss_pred EEEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEecccee
Confidence 9999999874210 123444444 35666666676654333 445555
Q ss_pred eCCccEEEEceeEc
Q 017972 338 MGSTAITISNNHMT 351 (363)
Q Consensus 338 ~gSt~ITISNn~F~ 351 (363)
-|.-..-+.||.|.
T Consensus 426 FG~a~avfq~C~i~ 439 (587)
T PLN02484 426 FGNAAVVLQNCSIY 439 (587)
T ss_pred cccceeEEeccEEE
Confidence 55555556666654
No 62
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=86.49 E-value=9.9 Score=41.04 Aligned_cols=66 Identities=14% Similarity=0.324 Sum_probs=41.4
Q ss_pred hHHHHHhc-------CCCeEEEEeeceEEEeceeEEE---cCCcEEEeeCCceEEe-------ec------eeEEEEccc
Q 017972 217 TLRHAVIQ-------DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIA-------NG------GCITIQFVT 273 (363)
Q Consensus 217 TLR~AV~q-------~~Pr~IVF~~sGtI~Lk~eL~V---~SnKTIdGrGA~v~I~-------~G------~gItI~~as 273 (363)
|..+||.. +..+++|+=+.|+- ++.|.| ..|+||.|.|..-+|. +| +.+.+ .++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v-~~~ 340 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVY--EEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAV-VGQ 340 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEE--EEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEE-ECC
Confidence 67777743 11244444455664 466777 5788999988654322 22 22333 579
Q ss_pred cEEEeceEEeec
Q 017972 274 NVIIHGLHVHDC 285 (363)
Q Consensus 274 NVIIrNL~I~d~ 285 (363)
+++.+||.|.|-
T Consensus 341 ~F~a~nitf~Nt 352 (566)
T PLN02713 341 NFVAVNITFRNT 352 (566)
T ss_pred CeEEEeeEEEeC
Confidence 999999999874
No 63
>smart00656 Amb_all Amb_all domain.
Probab=86.20 E-value=10 Score=34.86 Aligned_cols=94 Identities=22% Similarity=0.226 Sum_probs=54.3
Q ss_pred EcCCcEEEeeCCceEEeeceeEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCe-EEee-CCceEEEEe
Q 017972 246 VNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDA-ISIF-GSSHIWIDH 323 (363)
Q Consensus 246 V~SnKTIdGrGA~v~I~~G~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDa-IsI~-gS~NVWIDH 323 (363)
|-.|.+|.+..... ..++-+|.+.+++||+|.+..|....+ ++. .....|+ +.+. ++.+|=|-.
T Consensus 43 Iirnl~i~~~~~~~-~~~~D~i~~~~~~~VwIDHct~s~~~~------------~~~-~~~~~D~~~di~~~s~~vTvs~ 108 (190)
T smart00656 43 IIRNLTIHDPKPVY-GSDGDAISIDGSSNVWIDHVSLSGCTV------------TGF-GDDTYDGLIDIKNGSTYVTISN 108 (190)
T ss_pred EEeCCEEECCccCC-CCCCCEEEEeCCCeEEEEccEeEccee------------ccC-CCCCCCccEEECcccccEEEEC
Confidence 34677887743321 123557888999999999999976311 110 0112333 4444 567777777
Q ss_pred eeeeCCCCcceEeeeCC------ccEEEEceeEcCC
Q 017972 324 NSLSHCADGLVDAVMGS------TAITISNNHMTHH 353 (363)
Q Consensus 324 cSfS~~~DGLIDv~~gS------t~ITISNn~F~~H 353 (363)
|.|....-+.+--...+ ..||+-+|+|.+.
T Consensus 109 ~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 109 NYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ceEecCCEEEEEccCCCccccccceEEEECcEEcCc
Confidence 77765443333111111 2699999999753
No 64
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=84.78 E-value=14 Score=36.47 Aligned_cols=114 Identities=11% Similarity=0.138 Sum_probs=59.7
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeceeEEEc---CCcEEEeeCCceEEeec-------------eeEEEEccccEE
Q 017972 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIVN---SFKTIDGRGANVHIANG-------------GCITIQFVTNVI 276 (363)
Q Consensus 217 TLR~AV~q----~~Pr~IVF~~sGtI~Lk~eL~V~---SnKTIdGrGA~v~I~~G-------------~gItI~~asNVI 276 (363)
|+.+||.. +..+++|+=..|+- ++.|.|. +++||.|.|....+..+ +.+.+ .++|++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTY--REKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEE--E--EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeE--ccccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-ccccee
Confidence 67777753 23345555556655 4667773 69999999886443222 11223 579999
Q ss_pred EeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEeeCCceEEEEeeeeeCCCCcceEeeeCCccEEEEceeEcC
Q 017972 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTH 352 (363)
Q Consensus 277 IrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~~DGLIDv~~gSt~ITISNn~F~~ 352 (363)
.+||.|.|-.. . ...-.-|+.+. ++++.+.+|.|.-..|=|..- ....=+.+|++..
T Consensus 91 ~~nit~~Nt~g--------------~-~~~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~IeG 147 (298)
T PF01095_consen 91 AENITFENTAG--------------P-SGGQAVALRVS-GDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIEG 147 (298)
T ss_dssp EEEEEEEEHCS--------------G-SG----SEEET--TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEE
T ss_pred eeeeEEecCCC--------------C-cccceeeeeec-CCcEEEEEeEEccccceeeec---cceeEEEeeEEEe
Confidence 99999987321 0 01123455553 577889999998877766531 1233344555543
No 65
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=84.75 E-value=2.9 Score=44.94 Aligned_cols=123 Identities=18% Similarity=0.131 Sum_probs=73.9
Q ss_pred CCCeEEEEeeceEEEece------e---EEE--cCCcEEEeeCCce-EEeeceeEEEEccccEEEeceEEeecccCCCcc
Q 017972 225 DKPLWIVFKRDMVIQLKQ------E---LIV--NSFKTIDGRGANV-HIANGGCITIQFVTNVIIHGLHVHDCKPTGNAM 292 (363)
Q Consensus 225 ~~Pr~IVF~~sGtI~Lk~------e---L~V--~SnKTIdGrGA~v-~I~~G~gItI~~asNVIIrNL~I~d~~p~~~~~ 292 (363)
..|+.+.|...-.+.+.. + +.+ -+|.||.+..-+. +..+-.||.+...+||.|.+.+|.. +.+.+
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt---gDD~I 312 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT---GDDCI 312 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec---CCceE
Confidence 578999988765555421 1 111 3455555433221 0001237888899999999999953 22211
Q ss_pred eecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCCcceEee---eCCccEEEEceeEcCCceeEE
Q 017972 293 VRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLVDAV---MGSTAITISNNHMTHHNEVCL 358 (363)
Q Consensus 293 iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~DGLIDv~---~gSt~ITISNn~F~~H~KvmL 358 (363)
... .++ ..|+-... -+++|||=||.|+.++-+++... .+-.+||+-+|.|.+-+...=
T Consensus 313 ~ik--sg~------~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLR 374 (542)
T COG5434 313 AIK--SGA------GLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLR 374 (542)
T ss_pred Eee--ccc------CCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceee
Confidence 111 011 11111112 26889999999999888887533 367899999999998665543
No 66
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=80.49 E-value=57 Score=34.36 Aligned_cols=51 Identities=8% Similarity=0.170 Sum_probs=31.2
Q ss_pred ccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEee-CCceEEEEeeeeeCCCCcce
Q 017972 271 FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLV 334 (363)
Q Consensus 271 ~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~-gS~NVWIDHcSfS~~~DGLI 334 (363)
.++|++.+||+|.|-.+.+ . ...++-|+-+. .++.+-+.+|.|--..|=|.
T Consensus 204 ~ad~F~a~NLTf~Ntag~~--~-----------~~~~~QAVALrv~GDra~fy~C~flG~QDTLy 255 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDS--V-----------DAGNHPAVALRTDGDKVQIENVNILGRQDTFF 255 (422)
T ss_pred ECCCEEEEeeEEEeCCCCC--C-----------CCCcceeEEEEEcCCcEEEEeeEEecccceee
Confidence 5799999999998743210 0 01123444444 35677777787766555555
No 67
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=80.02 E-value=12 Score=35.93 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=39.4
Q ss_pred CCCCCeEEeeCCc-eEEEEeeeeeCCCCcceEeeeCCccEEEEceeEcCCce
Q 017972 305 VADGDAISIFGSS-HIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNE 355 (363)
Q Consensus 305 ~sdgDaIsI~gS~-NVWIDHcSfS~~~DGLIDv~~gSt~ITISNn~F~~H~K 355 (363)
.-..||+++.+.. .+.|.-..+....|..|-. .+.-.++|+|-+..++-|
T Consensus 93 dVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~-Ng~Gtv~I~nF~a~d~GK 143 (215)
T PF03211_consen 93 DVCEDAATFKGDGGTVTIIGGGARNASDKVFQH-NGGGTVTIKNFYAEDFGK 143 (215)
T ss_dssp S-SSESEEEESSEEEEEEESTEEEEEEEEEEEE--SSEEEEEEEEEEEEEEE
T ss_pred ccceeeeEEcCCCceEEEeCCcccCCCccEEEe-cCceeEEEEeEEEcCCCE
Confidence 4456999999887 9999999999999999965 556679999866655554
No 68
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=79.77 E-value=9.8 Score=35.20 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=46.4
Q ss_pred eeceeEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCC-eEEee-CCceEEEEeeeeeCCCCcceE----
Q 017972 262 ANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGD-AISIF-GSSHIWIDHNSLSHCADGLVD---- 335 (363)
Q Consensus 262 ~~G~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgD-aIsI~-gS~NVWIDHcSfS~~~DGLID---- 335 (363)
.++-+|.+.+++||+|.+..|.......+ ....| .+.+. ++++|=|-+|-|.......+-
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~--------------~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d 138 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECN--------------SDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSD 138 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GG--------------GSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCT
T ss_pred cCCCeEEEEecccEEEeccEEeccccccc--------------cccCCceEEEEeCCceEEEEchhccccccccccCCCC
Confidence 44567899999999999999987521100 01133 35665 578888888888764333221
Q ss_pred --eeeCCccEEEEceeEcCC
Q 017972 336 --AVMGSTAITISNNHMTHH 353 (363)
Q Consensus 336 --v~~gSt~ITISNn~F~~H 353 (363)
.......||+-+|+|.++
T Consensus 139 ~~~~~~~~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 139 SNSTDRGLRVTFHHNYFANT 158 (200)
T ss_dssp TCGGGTTEEEEEES-EEEEE
T ss_pred CccccCCceEEEEeEEECch
Confidence 112226999999999753
No 69
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=71.48 E-value=7.3 Score=27.15 Aligned_cols=42 Identities=26% Similarity=0.285 Sum_probs=33.6
Q ss_pred eEEeeCCceEEEEeeeeeCCCCcceEeeeCCccEEEEceeEcCC
Q 017972 310 AISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHH 353 (363)
Q Consensus 310 aIsI~gS~NVWIDHcSfS~~~DGLIDv~~gSt~ITISNn~F~~H 353 (363)
||.+..+++..|..+.++...||.. + ..|.+-+|..|.+.+.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~-~-~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIY-L-TDSSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEE-E-EeCCCCEeECCEEEcC
Confidence 5778888888899999999999654 3 4578888988888754
No 70
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=70.26 E-value=7.4 Score=34.22 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=28.8
Q ss_pred eCCceEEEEeeeeeCCCCcceEeeeCCccEEEEceeEcCCce
Q 017972 314 FGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNE 355 (363)
Q Consensus 314 ~gS~NVWIDHcSfS~~~DGLIDv~~gSt~ITISNn~F~~H~K 355 (363)
.+..++.|..|.+......-+.+..+++ ++|+||.|.+=..
T Consensus 182 ~~~~~~~i~n~~~~~~~~~gi~i~~~~~-~~i~n~~i~~~~~ 222 (225)
T PF12708_consen 182 LGNNNITISNNTFEGNCGNGINIEGGSN-IIISNNTIENCDD 222 (225)
T ss_dssp CEEEEEEEECEEEESSSSESEEEEECSE-EEEEEEEEESSSE
T ss_pred eecceEEEEeEEECCccceeEEEECCeE-EEEEeEEEECCcc
Confidence 3447888889988875555555655554 8999998877543
No 71
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=62.85 E-value=39 Score=33.04 Aligned_cols=90 Identities=21% Similarity=0.143 Sum_probs=51.9
Q ss_pred EcCCcEEEeeCCceE-EeeceeEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEeeC------Cce
Q 017972 246 VNSFKTIDGRGANVH-IANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFG------SSH 318 (363)
Q Consensus 246 V~SnKTIdGrGA~v~-I~~G~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~g------S~N 318 (363)
..++.+|.|..-... ...|.||.|..+ +..|+|-+|+++. .++|.+.+ ..+
T Consensus 95 ~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~~ 152 (246)
T PF07602_consen 95 LANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGING 152 (246)
T ss_pred ecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcccc
Confidence 366777777533211 124678999776 8889999998753 23444433 234
Q ss_pred EEEEeeeeeCCCCcceE-eeeCCccEEEEceeEcCCceeE
Q 017972 319 IWIDHNSLSHCADGLVD-AVMGSTAITISNNHMTHHNEVC 357 (363)
Q Consensus 319 VWIDHcSfS~~~DGLID-v~~gSt~ITISNn~F~~H~Kvm 357 (363)
+.|.-+++....-|.-- .....-.-+|.||+|++....+
T Consensus 153 ~vI~GN~~~~~~~Gi~i~~~~~~~~n~I~NN~I~~N~~Gi 192 (246)
T PF07602_consen 153 NVISGNSIYFNKTGISISDNAAPVENKIENNIIENNNIGI 192 (246)
T ss_pred eEeecceEEecCcCeEEEcccCCccceeeccEEEeCCcCe
Confidence 44666666665555431 1111122477888888755543
No 72
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=60.48 E-value=7 Score=32.92 Aligned_cols=12 Identities=25% Similarity=0.224 Sum_probs=5.8
Q ss_pred eeecchhHHHHHH
Q 017972 66 MAVTQRGICLCFA 78 (363)
Q Consensus 66 ~~~~~~~~~~~~~ 78 (363)
|+ |++++.|.++
T Consensus 1 Ma-SK~~llL~l~ 12 (95)
T PF07172_consen 1 MA-SKAFLLLGLL 12 (95)
T ss_pred Cc-hhHHHHHHHH
Confidence 56 5555444333
No 73
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=49.22 E-value=31 Score=35.42 Aligned_cols=53 Identities=17% Similarity=0.369 Sum_probs=35.2
Q ss_pred ccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEeeCCceEEEEeeeeeCCCCcce
Q 017972 271 FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLV 334 (363)
Q Consensus 271 ~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~~DGLI 334 (363)
+.+..||||+.-+++.|. +.....-|.-.+.|+|..|..||..++-++.--||
T Consensus 266 ngkhfvirnvkaknitpd-----------fskkagidnatvaiygcdnfvidni~mvnsagmli 318 (464)
T PRK10123 266 NGKHFVIRNIKAKNITPD-----------FSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLI 318 (464)
T ss_pred CCcEEEEEeeeccccCCC-----------chhhcCCCcceEEEEcccceEEeccccccccccEE
Confidence 455566666666665542 11111224556778999999999999999876665
No 74
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=48.59 E-value=13 Score=34.25 Aligned_cols=34 Identities=26% Similarity=0.567 Sum_probs=23.1
Q ss_pred cchhhHHHHHHHHHHHHHHHhhccccccccccccccceee
Q 017972 29 SSLSLSLSLLLFLSSFLFFLGCVWGVGKREKIKENNAMAV 68 (363)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (363)
+|..+++.+.|||...+--+||||---. .+.|.|
T Consensus 8 ~sv~i~igi~Ll~lLl~cgiGcvwhwkh------r~~~~f 41 (158)
T PF11770_consen 8 TSVAISIGISLLLLLLLCGIGCVWHWKH------RDSTRF 41 (158)
T ss_pred chHHHHHHHHHHHHHHHHhcceEEEeec------cCcccc
Confidence 3555666666777777788999997544 455665
No 75
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=35.82 E-value=99 Score=21.36 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=29.9
Q ss_pred eEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEeeCCceEEEEeeeeeCC
Q 017972 266 CITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHC 329 (363)
Q Consensus 266 gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI~gS~NVWIDHcSfS~~ 329 (363)
||.+..+++..|++=+|++ ..|||.+..+++--|..+.++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~----------------------~~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN----------------------NSYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeC----------------------CCCEEEEEeCCCCEeECCEEEcC
Confidence 4666666666676666653 35799999988888888877653
No 76
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=34.83 E-value=9.3 Score=29.20 Aligned_cols=23 Identities=48% Similarity=1.070 Sum_probs=15.9
Q ss_pred CcceeeccCccccCccchhh-ccc
Q 017972 163 IDDCWRCDGNWHKNRKRLAD-CGI 185 (363)
Q Consensus 163 iD~cWRcd~nW~~~Rq~LA~-cA~ 185 (363)
-|+|-||...|+..|-.-|. |++
T Consensus 20 yd~ci~cqgkwagkrgkcaahc~i 43 (55)
T PF07822_consen 20 YDDCIRCQGKWAGKRGKCAAHCII 43 (55)
T ss_dssp HHHH--TTGGGTT-HHHHHHHHHH
T ss_pred hhHHheecceeccccCcchhheee
Confidence 48999999999999877665 543
No 77
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=31.52 E-value=1.4e+02 Score=30.87 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=55.4
Q ss_pred cccccceeecchhHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccchHHHHHHHhcccCCChHHHHHHH
Q 017972 60 IKENNAMAVTQRGICLCFAVVLMLFVGVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIASMV 139 (363)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 139 (363)
+||.|+ +.++|++..+.-++++++-. . +|+|-++...-+..++.+...+..|.=.-++.- ++
T Consensus 2 m~~qnv-----R~l~Livct~tYLLvGAaVF--d----------aLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r-~~ 63 (350)
T KOG4404|consen 2 MKRQNV-----RTLLLIVCTFTYLLVGAAVF--D----------ALESENEARERERLERRLANLKRKYNLSEEDYR-EL 63 (350)
T ss_pred CcchhH-----HHHHHHHHHHHHHHHHHHHH--H----------HhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHH-HH
Confidence 455555 44555555555556666543 1 566666666666666655555555543333222 22
Q ss_pred HhhhccchhhcccccccCCCCCCCcceeeccCccccCccch-hh---cccccCCcCCCCCCCeEE
Q 017972 140 EMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRL-AD---CGIGFGRNAIGGRDGRFY 200 (363)
Q Consensus 140 ~~~~~~~~~r~~l~~~~c~~~NpiD~cWRcd~nW~~~Rq~L-A~---cA~GFG~~TTGG~GG~iy 200 (363)
.+.+..+. +. +-.|.|...-.=- |. ..+|||..|.+=-+||+.
T Consensus 64 er~i~~s~-ph-----------------~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~F 110 (350)
T KOG4404|consen 64 ERVILKSE-PH-----------------KAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAF 110 (350)
T ss_pred HHHHHhcC-cc-----------------ccccccccCcceEEEEEEEeeeccCCCCCCCcCceeh
Confidence 33333221 11 2345576543211 11 589999988877777753
No 78
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=30.50 E-value=31 Score=28.12 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhccccccc
Q 017972 38 LLFLSSFLFFLGCVWGVGKR 57 (363)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~ 57 (363)
+++++.++|++-|.|-+-||
T Consensus 72 li~~~~~~f~~~v~yI~~rR 91 (92)
T PF03908_consen 72 LIFFAFLFFLLVVLYILWRR 91 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 45555444555556766555
No 79
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=27.95 E-value=53 Score=29.19 Aligned_cols=34 Identities=32% Similarity=0.364 Sum_probs=28.8
Q ss_pred cchhhHHHHHHHHHHHHHHHhhcccccccccccc
Q 017972 29 SSLSLSLSLLLFLSSFLFFLGCVWGVGKREKIKE 62 (363)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (363)
+.|++.|.+|.++.|...|+.--|-+|.|.--|.
T Consensus 8 a~Ls~~ln~LAL~~S~tA~~sSyWC~GTqKVpKP 41 (118)
T PF07803_consen 8 ALLSLILNLLALAFSTTALLSSYWCEGTQKVPKP 41 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccceecCCC
Confidence 4588888888888889999999999999976664
No 80
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=27.25 E-value=1.8e+02 Score=23.90 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhccccccccccccccceeecchhHHHHHHHHHHH
Q 017972 35 LSLLLFLSSFLFFLGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLML 83 (363)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (363)
.++.|.+.-|+...++.+|.|.... ++-.-...-|-|+.+.|.+..++
T Consensus 9 ~tl~l~l~yf~~W~~~ay~~~~~~~-~~y~~i~GlPlWF~~SCi~~~il 56 (80)
T PF06196_consen 9 WTLGLTLIYFAWWYGFAYGLGNGDG-EEYKYIFGLPLWFFYSCIGGPIL 56 (80)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCc-cccccccCCcHHHHHHHHHHHHH
Confidence 3566667777778888888887654 33333444788887766654444
No 81
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=24.47 E-value=1e+02 Score=26.16 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=25.1
Q ss_pred ccccccccceeecchhHHHHHHHHHHHHHHHhh
Q 017972 57 REKIKENNAMAVTQRGICLCFAVVLMLFVGVLA 89 (363)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (363)
.||+|.|.--.|---|++|.+.++++|++....
T Consensus 28 ~~~Lka~kysIVI~FWv~LA~FV~~lF~iL~~m 60 (90)
T PF15183_consen 28 EEKLKANKYSIVIAFWVSLAAFVVFLFLILLYM 60 (90)
T ss_pred HHHhcccceeeehhHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888998887777777665543
No 82
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=21.48 E-value=1.5e+02 Score=29.75 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=6.7
Q ss_pred CccEEEEceeEc
Q 017972 340 STAITISNNHMT 351 (363)
Q Consensus 340 St~ITISNn~F~ 351 (363)
|.++|+-||++.
T Consensus 193 SkNltliNC~I~ 204 (277)
T PF12541_consen 193 SKNLTLINCTIE 204 (277)
T ss_pred cCCeEEEEeEEe
Confidence 555555555554
No 83
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=20.31 E-value=4e+02 Score=29.51 Aligned_cols=73 Identities=16% Similarity=0.287 Sum_probs=33.3
Q ss_pred ccccEEEeceEEeecccCCCcceecCC-----------CcCC-CCcCCCCCeEEeeCCceEEEEeeeeeCCCCcceEeee
Q 017972 271 FVTNVIIHGLHVHDCKPTGNAMVRSSP-----------THYG-WRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVM 338 (363)
Q Consensus 271 ~asNVIIrNL~I~d~~p~~~~~iR~sp-----------~~~G-~r~~sdgDaIsI~gS~NVWIDHcSfS~~~DGLIDv~~ 338 (363)
+..+..+.++.|.+ .|-..-.++... ...| |+ ...|||.++..+.| .+|.+....|.+ -.++
T Consensus 327 g~q~~~~~GiTI~~-pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~--~qtDGi~ly~nS~i--~dcF~h~nDD~i-KlYh 400 (582)
T PF03718_consen 327 GGQTLTCEGITIND-PPFHSMDLYGNENDKFSMNISNYKQVGAWY--FQTDGIELYPNSTI--RDCFIHVNDDAI-KLYH 400 (582)
T ss_dssp SSEEEEEES-EEE---SS-SEEEESSSGGGEEEEEEEEEEE---C--TT----B--TT-EE--EEEEEEESS-SE-E--S
T ss_pred CcceEEEEeeEecC-CCcceEEecCCccccccceeeceeeeeeEE--eccCCccccCCCee--eeeEEEecCchh-heee
Confidence 46688889998876 232222222111 1233 64 46789999976666 677666666665 2233
Q ss_pred CCccEEEEceeEc
Q 017972 339 GSTAITISNNHMT 351 (363)
Q Consensus 339 gSt~ITISNn~F~ 351 (363)
++++|+++-+.
T Consensus 401 --S~v~v~~~ViW 411 (582)
T PF03718_consen 401 --SNVSVSNTVIW 411 (582)
T ss_dssp --TTEEEEEEEEE
T ss_pred --cCcceeeeEEE
Confidence 67777777664
Done!