Query 017974
Match_columns 363
No_of_seqs 122 out of 1276
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:03:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2439 Nuclear architecture r 100.0 7.7E-83 1.7E-87 618.4 21.3 327 6-354 1-340 (459)
2 TIGR02512 Fe_only_hydrog hydro 100.0 5E-63 1.1E-67 493.2 27.3 276 52-354 45-324 (374)
3 COG4624 Iron only hydrogenase 100.0 2.9E-62 6.2E-67 475.3 12.7 255 47-332 24-282 (411)
4 PF02906 Fe_hyd_lg_C: Iron onl 100.0 2.6E-60 5.7E-65 457.9 16.8 238 90-355 1-239 (285)
5 PF12837 Fer4_6: 4Fe-4S bindin 97.7 9.6E-06 2.1E-10 49.7 -0.2 24 51-74 1-24 (24)
6 PF00037 Fer4: 4Fe-4S binding 97.4 5.3E-05 1.1E-09 46.3 0.7 24 52-75 1-24 (24)
7 COG1142 HycB Fe-S-cluster-cont 97.0 0.00028 6E-09 63.2 1.3 48 31-79 57-104 (165)
8 PRK12809 putative oxidoreducta 96.9 0.00037 8E-09 74.7 1.4 79 56-134 109-197 (639)
9 PF14697 Fer4_21: 4Fe-4S diclu 96.5 0.0016 3.5E-08 48.5 1.9 34 42-75 24-58 (59)
10 PF12797 Fer4_2: 4Fe-4S bindin 96.3 0.0014 3E-08 39.3 0.7 20 52-71 3-22 (22)
11 PF13247 Fer4_11: 4Fe-4S diclu 96.1 0.0017 3.8E-08 53.3 0.3 41 38-78 20-61 (98)
12 COG0437 HybA Fe-S-cluster-cont 95.9 0.0041 8.9E-08 57.5 2.1 45 31-75 73-118 (203)
13 PF14697 Fer4_21: 4Fe-4S diclu 95.8 0.0036 7.7E-08 46.6 1.1 22 52-73 1-22 (59)
14 PRK15449 ferredoxin-like prote 95.6 0.0059 1.3E-07 49.9 1.6 36 38-73 42-77 (95)
15 PF12800 Fer4_4: 4Fe-4S bindin 95.6 0.0066 1.4E-07 34.1 1.2 15 57-71 2-16 (17)
16 TIGR02494 PFLE_PFLC glycyl-rad 95.6 0.0092 2E-07 57.6 3.0 95 38-136 59-163 (295)
17 COG2768 Uncharacterized Fe-S c 95.5 0.0071 1.5E-07 58.9 2.0 36 38-75 204-239 (354)
18 PF13187 Fer4_9: 4Fe-4S diclus 95.4 0.0049 1.1E-07 44.3 0.4 20 55-74 36-55 (55)
19 PF12798 Fer4_3: 4Fe-4S bindin 95.1 0.0054 1.2E-07 33.4 -0.2 15 59-73 1-15 (15)
20 PRK13409 putative ATPase RIL; 94.8 0.011 2.5E-07 62.9 1.3 32 47-78 39-70 (590)
21 PF13237 Fer4_10: 4Fe-4S diclu 94.6 0.013 2.7E-07 41.9 0.7 21 51-71 1-21 (52)
22 TIGR03478 DMSO_red_II_bet DMSO 94.3 0.014 3E-07 57.5 0.4 38 38-75 142-180 (321)
23 PRK09624 porD pyuvate ferredox 94.3 0.021 4.5E-07 47.4 1.4 38 38-75 62-99 (105)
24 PRK09625 porD pyruvate flavodo 94.3 0.023 5.1E-07 49.1 1.7 21 53-73 85-105 (133)
25 TIGR01660 narH nitrate reducta 94.2 0.017 3.7E-07 59.3 0.7 44 34-77 190-234 (492)
26 COG1245 Predicted ATPase, RNas 94.0 0.018 3.9E-07 59.2 0.6 32 48-79 41-72 (591)
27 PRK09626 oorD 2-oxoglutarate-a 94.0 0.026 5.5E-07 46.4 1.3 28 48-75 7-34 (103)
28 PF13746 Fer4_18: 4Fe-4S diclu 94.0 0.02 4.4E-07 43.9 0.7 22 52-73 45-66 (69)
29 COG3383 Uncharacterized anaero 93.8 0.023 5E-07 61.2 1.0 31 48-78 183-213 (978)
30 PF12838 Fer4_7: 4Fe-4S diclus 93.7 0.022 4.8E-07 40.7 0.4 24 50-73 29-52 (52)
31 COG1143 NuoI Formate hydrogenl 93.6 0.032 7E-07 50.4 1.3 29 48-76 86-114 (172)
32 PRK05113 electron transport co 93.4 0.026 5.6E-07 51.8 0.5 39 39-77 126-164 (191)
33 COG1145 NapF Ferredoxin [Energ 93.4 0.033 7.2E-07 44.2 1.0 26 51-76 23-48 (99)
34 PRK08764 ferredoxin; Provision 93.3 0.047 1E-06 47.2 1.9 20 55-74 83-102 (135)
35 TIGR02936 fdxN_nitrog ferredox 93.3 0.031 6.7E-07 44.5 0.7 24 53-76 66-89 (91)
36 PRK08348 NADH-plastoquinone ox 93.3 0.035 7.6E-07 46.8 1.0 29 48-76 33-61 (120)
37 TIGR02066 dsrB sulfite reducta 93.2 0.043 9.4E-07 54.8 1.7 38 38-75 192-232 (341)
38 COG1143 NuoI Formate hydrogenl 93.1 0.031 6.8E-07 50.5 0.5 31 48-78 46-76 (172)
39 PRK14993 tetrathionate reducta 93.0 0.039 8.4E-07 52.5 1.0 43 34-76 107-149 (244)
40 PF13237 Fer4_10: 4Fe-4S diclu 93.0 0.039 8.5E-07 39.2 0.8 24 47-70 29-52 (52)
41 TIGR01582 FDH-beta formate deh 92.9 0.05 1.1E-06 53.0 1.6 43 34-76 100-143 (283)
42 TIGR01944 rnfB electron transp 92.9 0.045 9.8E-07 48.9 1.2 27 49-75 105-131 (165)
43 TIGR02179 PorD_KorD 2-oxoacid: 92.9 0.068 1.5E-06 41.2 2.0 36 39-74 37-72 (78)
44 PRK09623 vorD 2-ketoisovalerat 92.8 0.043 9.2E-07 45.4 0.9 27 49-75 73-99 (105)
45 TIGR02936 fdxN_nitrog ferredox 92.7 0.036 7.9E-07 44.0 0.3 28 49-76 13-40 (91)
46 PRK06991 ferredoxin; Provision 92.6 0.041 9E-07 53.2 0.6 25 50-74 78-102 (270)
47 TIGR02060 aprB adenosine phosp 92.5 0.03 6.5E-07 48.5 -0.5 46 34-79 20-67 (132)
48 PRK08348 NADH-plastoquinone ox 92.4 0.065 1.4E-06 45.2 1.5 41 38-78 53-94 (120)
49 COG2221 DsrA Dissimilatory sul 92.3 0.04 8.8E-07 54.0 0.1 37 36-73 181-217 (317)
50 PRK08222 hydrogenase 4 subunit 92.2 0.091 2E-06 47.8 2.3 26 52-77 68-93 (181)
51 COG1146 Ferredoxin [Energy pro 92.2 0.063 1.4E-06 40.6 1.1 29 49-77 33-61 (68)
52 COG1034 NuoG NADH dehydrogenas 92.1 0.056 1.2E-06 58.5 0.9 81 62-145 189-271 (693)
53 TIGR03149 cyt_nit_nrfC cytochr 91.9 0.063 1.4E-06 50.4 0.8 42 34-75 101-143 (225)
54 TIGR00402 napF ferredoxin-type 91.8 0.11 2.4E-06 42.5 2.1 40 38-77 45-86 (101)
55 TIGR00403 ndhI NADH-plastoquin 91.8 0.071 1.5E-06 48.6 1.0 25 51-75 96-120 (183)
56 PRK12387 formate hydrogenlyase 91.5 0.1 2.3E-06 47.1 1.8 21 54-74 70-90 (180)
57 PF13187 Fer4_9: 4Fe-4S diclus 91.5 0.05 1.1E-06 39.0 -0.2 20 58-77 1-20 (55)
58 CHL00065 psaC photosystem I su 91.4 0.064 1.4E-06 42.0 0.3 26 51-76 3-28 (81)
59 TIGR02163 napH_ ferredoxin-typ 91.4 0.1 2.2E-06 49.9 1.7 27 49-75 226-252 (255)
60 TIGR02912 sulfite_red_C sulfit 91.1 0.1 2.2E-06 51.3 1.4 29 48-76 192-220 (314)
61 PLN00071 photosystem I subunit 91.1 0.085 1.8E-06 41.2 0.7 25 52-76 4-28 (81)
62 PRK08222 hydrogenase 4 subunit 91.0 0.073 1.6E-06 48.4 0.3 28 49-76 30-57 (181)
63 PRK09477 napH quinol dehydroge 90.9 0.12 2.5E-06 49.9 1.6 25 53-77 238-262 (271)
64 TIGR00403 ndhI NADH-plastoquin 90.8 0.11 2.4E-06 47.3 1.3 26 49-74 54-79 (183)
65 PRK06273 ferredoxin; Provision 90.6 0.13 2.9E-06 46.1 1.6 26 50-75 84-109 (165)
66 COG1141 Fer Ferredoxin [Energy 90.6 0.11 2.3E-06 40.0 0.8 24 51-74 2-25 (68)
67 PF13459 Fer4_15: 4Fe-4S singl 90.4 0.1 2.2E-06 39.2 0.6 22 52-73 1-22 (65)
68 PRK10194 ferredoxin-type prote 90.3 0.11 2.5E-06 46.1 0.9 40 37-76 114-157 (163)
69 PRK07569 bidirectional hydroge 90.1 0.12 2.5E-06 48.8 0.8 36 55-91 188-223 (234)
70 TIGR02951 DMSO_dmsB DMSO reduc 90.1 0.14 3E-06 45.3 1.2 40 37-76 74-114 (161)
71 TIGR02179 PorD_KorD 2-oxoacid: 90.0 0.12 2.6E-06 39.9 0.7 26 51-76 19-44 (78)
72 COG1145 NapF Ferredoxin [Energ 90.0 0.14 3E-06 40.6 1.1 40 37-76 39-82 (99)
73 PRK10882 hydrogenase 2 protein 89.9 0.11 2.4E-06 51.6 0.6 38 38-75 123-161 (328)
74 PF12838 Fer4_7: 4Fe-4S diclus 89.7 0.08 1.7E-06 37.7 -0.5 21 58-78 1-21 (52)
75 PRK12771 putative glutamate sy 89.6 0.12 2.7E-06 54.5 0.7 39 38-76 521-560 (564)
76 CHL00065 psaC photosystem I su 89.5 0.13 2.7E-06 40.3 0.5 24 53-76 42-65 (81)
77 KOG3256 NADH:ubiquinone oxidor 89.3 0.11 2.4E-06 46.5 0.0 28 48-75 141-168 (212)
78 CHL00014 ndhI NADH dehydrogena 89.3 0.17 3.7E-06 45.3 1.2 26 49-74 51-76 (167)
79 TIGR02494 PFLE_PFLC glycyl-rad 89.2 0.18 3.9E-06 48.6 1.4 28 48-75 39-66 (295)
80 PRK05888 NADH dehydrogenase su 89.2 0.18 4E-06 44.8 1.3 28 49-76 45-77 (164)
81 PRK09625 porD pyruvate flavodo 89.0 0.13 2.9E-06 44.3 0.3 27 49-75 51-77 (133)
82 PF13370 Fer4_13: 4Fe-4S singl 89.0 0.13 2.7E-06 38.0 0.1 20 54-73 1-20 (58)
83 CHL00014 ndhI NADH dehydrogena 88.9 0.14 3E-06 45.9 0.3 27 51-77 93-119 (167)
84 COG1144 Pyruvate:ferredoxin ox 88.9 0.21 4.5E-06 40.4 1.3 37 39-75 47-84 (91)
85 PRK02651 photosystem I subunit 88.9 0.17 3.6E-06 39.4 0.7 24 53-76 5-28 (81)
86 PRK09898 hypothetical protein; 88.9 0.26 5.7E-06 45.6 2.2 43 34-76 130-173 (208)
87 TIGR03048 PS_I_psaC photosyste 88.8 0.17 3.7E-06 39.4 0.8 25 52-76 3-27 (80)
88 PRK10330 formate dehydrogenase 88.7 0.21 4.6E-06 45.0 1.4 40 37-77 68-107 (181)
89 TIGR01971 NuoI NADH-quinone ox 88.7 0.18 4E-06 42.2 0.9 27 49-75 30-61 (122)
90 TIGR01971 NuoI NADH-quinone ox 88.4 0.23 5E-06 41.6 1.3 25 52-76 77-101 (122)
91 PRK05888 NADH dehydrogenase su 88.4 0.23 5E-06 44.2 1.4 26 52-77 92-117 (164)
92 PRK06273 ferredoxin; Provision 88.3 0.15 3.2E-06 45.8 0.1 28 50-77 42-69 (165)
93 TIGR02064 dsrA sulfite reducta 88.3 0.28 6.1E-06 50.1 2.1 35 38-72 253-287 (402)
94 PLN00071 photosystem I subunit 87.9 0.19 4.1E-06 39.2 0.4 23 54-76 43-65 (81)
95 TIGR02512 Fe_only_hydrog hydro 87.5 0.2 4.3E-06 50.5 0.4 24 52-75 2-25 (374)
96 PF13484 Fer4_16: 4Fe-4S doubl 87.4 0.16 3.4E-06 38.0 -0.2 20 58-77 1-20 (67)
97 TIGR03048 PS_I_psaC photosyste 86.8 0.21 4.6E-06 38.9 0.2 24 53-76 41-64 (80)
98 PRK09626 oorD 2-oxoglutarate-a 86.7 0.32 7E-06 39.9 1.2 26 52-77 48-73 (103)
99 PRK06991 ferredoxin; Provision 86.5 0.28 6E-06 47.5 0.8 25 53-77 111-135 (270)
100 PRK06259 succinate dehydrogena 86.5 6.7 0.00014 40.7 11.1 19 55-73 183-201 (486)
101 COG1149 MinD superfamily P-loo 86.4 0.33 7.1E-06 47.0 1.3 45 34-78 76-120 (284)
102 TIGR02700 flavo_MJ0208 archaeo 86.3 0.24 5.2E-06 46.7 0.3 26 50-75 141-166 (234)
103 PRK02651 photosystem I subunit 86.2 0.28 6.1E-06 38.1 0.6 23 53-75 42-64 (81)
104 PRK07118 ferredoxin; Validated 86.2 0.27 5.9E-06 47.8 0.6 39 37-76 223-261 (280)
105 PRK08493 NADH dehydrogenase su 86.1 0.29 6.4E-06 54.2 0.9 23 56-78 203-225 (819)
106 TIGR01944 rnfB electron transp 86.1 0.35 7.5E-06 43.2 1.2 39 38-76 124-162 (165)
107 PRK05113 electron transport co 86.0 0.4 8.6E-06 44.0 1.6 27 49-75 106-132 (191)
108 PRK09624 porD pyuvate ferredox 85.8 0.28 6.1E-06 40.6 0.4 24 52-75 46-69 (105)
109 TIGR03287 methan_mark_16 putat 84.7 0.31 6.7E-06 49.5 0.2 23 53-75 326-348 (391)
110 PRK12387 formate hydrogenlyase 84.7 0.4 8.7E-06 43.3 0.9 25 49-73 30-54 (180)
111 TIGR02176 pyruv_ox_red pyruvat 84.3 0.53 1.1E-05 54.3 1.9 32 52-83 734-767 (1165)
112 TIGR03224 benzo_boxA benzoyl-C 84.2 0.37 8.1E-06 49.2 0.5 40 35-75 18-57 (411)
113 PRK10194 ferredoxin-type prote 84.1 0.59 1.3E-05 41.5 1.7 39 38-76 45-85 (163)
114 TIGR02060 aprB adenosine phosp 84.1 0.48 1E-05 41.0 1.1 25 52-76 3-32 (132)
115 PRK12769 putative oxidoreducta 84.0 0.49 1.1E-05 51.0 1.4 39 36-75 65-103 (654)
116 PRK14028 pyruvate ferredoxin o 83.9 0.52 1.1E-05 46.2 1.4 27 48-74 238-264 (312)
117 PRK09623 vorD 2-ketoisovalerat 83.9 0.47 1E-05 39.2 0.9 26 50-75 44-69 (105)
118 PRK07118 ferredoxin; Validated 83.9 0.43 9.3E-06 46.4 0.8 39 38-77 150-188 (280)
119 TIGR02910 sulfite_red_A sulfit 83.5 0.63 1.4E-05 46.4 1.8 31 53-87 297-327 (334)
120 COG4231 Indolepyruvate ferredo 83.4 0.54 1.2E-05 50.1 1.4 27 49-75 600-626 (640)
121 COG0247 GlpC Fe-S oxidoreducta 83.4 2.4 5.3E-05 42.1 6.0 112 115-237 165-288 (388)
122 PRK12809 putative oxidoreducta 83.2 0.43 9.4E-06 51.4 0.5 42 35-77 64-105 (639)
123 COG1453 Predicted oxidoreducta 82.9 0.65 1.4E-05 46.7 1.6 19 55-73 349-367 (391)
124 TIGR00397 mauM_napG MauM/NapG 82.6 0.58 1.3E-05 43.6 1.1 26 50-75 168-195 (213)
125 TIGR00402 napF ferredoxin-type 82.5 0.57 1.2E-05 38.3 0.9 29 48-76 25-53 (101)
126 PRK09853 putative selenate red 82.3 0.7 1.5E-05 52.4 1.8 41 34-75 897-944 (1019)
127 cd07030 RNAP_D D subunit of Ar 81.6 0.62 1.3E-05 44.5 0.9 20 55-74 197-216 (259)
128 PRK08318 dihydropyrimidine deh 81.4 0.62 1.3E-05 47.5 0.9 27 51-77 371-398 (420)
129 COG1150 HdrC Heterodisulfide r 81.1 1.4 3E-05 40.6 2.9 76 55-130 37-119 (195)
130 TIGR02700 flavo_MJ0208 archaeo 81.0 0.62 1.3E-05 43.9 0.7 38 38-76 159-196 (234)
131 PF13534 Fer4_17: 4Fe-4S diclu 80.9 1 2.2E-05 32.8 1.7 17 58-74 1-17 (61)
132 PF13183 Fer4_8: 4Fe-4S diclus 80.8 0.31 6.7E-06 35.0 -1.1 17 56-72 2-18 (57)
133 TIGR03224 benzo_boxA benzoyl-C 80.3 0.8 1.7E-05 46.8 1.2 27 50-76 3-29 (411)
134 COG2768 Uncharacterized Fe-S c 80.2 0.72 1.6E-05 45.3 0.8 29 48-76 184-212 (354)
135 PRK09326 F420H2 dehydrogenase 80.2 0.58 1.3E-05 46.6 0.2 24 53-76 8-31 (341)
136 PRK14028 pyruvate ferredoxin o 79.9 0.72 1.6E-05 45.2 0.7 25 52-76 284-308 (312)
137 TIGR00397 mauM_napG MauM/NapG 79.6 0.58 1.3E-05 43.6 -0.0 22 56-77 52-73 (213)
138 COG1149 MinD superfamily P-loo 79.2 0.62 1.3E-05 45.1 0.0 27 49-75 61-87 (284)
139 TIGR03315 Se_ygfK putative sel 78.9 0.98 2.1E-05 51.3 1.5 43 36-78 894-942 (1012)
140 PRK09898 hypothetical protein; 78.2 1.1 2.4E-05 41.4 1.4 27 55-81 179-205 (208)
141 KOG0063 RNAse L inhibitor, ABC 78.2 0.75 1.6E-05 47.4 0.3 25 52-76 45-69 (592)
142 TIGR02176 pyruv_ox_red pyruvat 78.0 0.91 2E-05 52.4 0.9 28 49-76 675-702 (1165)
143 PRK09326 F420H2 dehydrogenase 78.0 2.2 4.8E-05 42.4 3.6 125 54-212 50-178 (341)
144 PRK00783 DNA-directed RNA poly 77.9 0.96 2.1E-05 43.3 0.9 25 50-75 163-187 (263)
145 PRK08764 ferredoxin; Provision 77.5 0.97 2.1E-05 39.0 0.8 22 54-75 112-133 (135)
146 PRK09476 napG quinol dehydroge 77.2 0.88 1.9E-05 43.6 0.4 21 52-72 179-199 (254)
147 COG2878 Predicted NADH:ubiquin 77.0 0.85 1.8E-05 41.6 0.3 44 46-89 104-149 (198)
148 COG1146 Ferredoxin [Energy pro 76.8 1.2 2.7E-05 33.5 1.1 24 52-75 3-26 (68)
149 PRK07570 succinate dehydrogena 76.6 1.1 2.4E-05 42.9 0.9 21 53-73 153-173 (250)
150 PRK09477 napH quinol dehydroge 76.3 1.1 2.5E-05 43.1 0.9 38 36-73 182-224 (271)
151 COG1148 HdrA Heterodisulfide r 76.2 1.6 3.4E-05 45.7 2.0 29 48-77 552-580 (622)
152 PF13534 Fer4_17: 4Fe-4S diclu 75.9 0.79 1.7E-05 33.4 -0.2 20 54-73 41-60 (61)
153 PRK08493 NADH dehydrogenase su 75.0 1.3 2.7E-05 49.4 1.0 24 49-72 133-156 (819)
154 PRK15055 anaerobic sulfite red 75.0 1.8 3.8E-05 43.4 1.9 19 55-73 305-323 (344)
155 TIGR03336 IOR_alpha indolepyru 74.9 1.1 2.4E-05 48.0 0.5 27 49-75 542-570 (595)
156 PRK13795 hypothetical protein; 74.8 1.3 2.8E-05 47.9 1.0 26 50-75 574-599 (636)
157 PTZ00305 NADH:ubiquinone oxido 74.7 1.1 2.3E-05 44.0 0.2 22 51-72 206-227 (297)
158 TIGR03290 CoB_CoM_SS_C CoB--Co 74.2 2.4 5.2E-05 36.8 2.4 16 57-72 2-17 (144)
159 COG2440 FixX Ferredoxin-like p 73.8 1.8 3.9E-05 35.6 1.4 35 39-73 47-82 (99)
160 TIGR03294 FrhG coenzyme F420 h 73.8 1 2.2E-05 42.4 -0.1 27 50-76 167-193 (228)
161 COG2878 Predicted NADH:ubiquin 73.1 0.74 1.6E-05 42.0 -1.2 40 38-77 126-165 (198)
162 PRK12814 putative NADPH-depend 73.0 1.3 2.9E-05 47.8 0.5 24 49-72 608-631 (652)
163 TIGR03294 FrhG coenzyme F420 h 72.0 1.2 2.7E-05 41.9 0.0 37 38-75 185-221 (228)
164 TIGR02163 napH_ ferredoxin-typ 72.0 1.8 3.9E-05 41.3 1.2 39 35-73 174-217 (255)
165 PRK15055 anaerobic sulfite red 71.6 1.6 3.4E-05 43.8 0.7 17 56-72 225-241 (344)
166 PF13183 Fer4_8: 4Fe-4S diclus 71.0 0.94 2E-05 32.4 -0.8 16 57-72 41-56 (57)
167 PRK11168 glpC sn-glycerol-3-ph 70.9 1.9 4E-05 43.4 1.0 23 53-75 3-25 (396)
168 TIGR01945 rnfC electron transp 70.8 2.3 5E-05 43.8 1.7 22 53-74 359-380 (435)
169 TIGR00384 dhsB succinate dehyd 70.6 2.9 6.3E-05 38.9 2.2 20 54-73 191-210 (220)
170 PRK07860 NADH dehydrogenase su 70.6 1.8 4E-05 47.9 0.9 20 58-77 191-210 (797)
171 TIGR01973 NuoG NADH-quinone ox 70.5 1.8 3.8E-05 46.4 0.8 21 58-78 183-203 (603)
172 TIGR02745 ccoG_rdxA_fixG cytoc 70.1 1.8 3.9E-05 44.7 0.7 18 56-73 230-247 (434)
173 PRK07569 bidirectional hydroge 69.8 1.7 3.6E-05 41.0 0.4 23 49-71 138-160 (234)
174 PRK14993 tetrathionate reducta 69.7 3.2 6.9E-05 39.5 2.2 39 39-80 142-189 (244)
175 TIGR00384 dhsB succinate dehyd 69.6 1.8 3.9E-05 40.3 0.6 19 55-73 136-154 (220)
176 PRK13984 putative oxidoreducta 69.2 1.8 4E-05 46.1 0.5 26 50-75 38-63 (604)
177 PRK09129 NADH dehydrogenase su 69.0 1.6 3.4E-05 48.2 -0.0 21 50-70 137-157 (776)
178 cd01916 ACS_1 Acetyl-CoA synth 68.9 12 0.00025 41.3 6.6 17 56-72 402-418 (731)
179 PRK08318 dihydropyrimidine deh 68.4 2 4.4E-05 43.8 0.7 25 48-72 333-357 (420)
180 COG2221 DsrA Dissimilatory sul 67.9 1.3 2.8E-05 43.7 -0.8 27 52-78 167-193 (317)
181 TIGR01973 NuoG NADH-quinone ox 67.8 1.9 4.2E-05 46.1 0.4 23 49-71 134-156 (603)
182 COG0479 FrdB Succinate dehydro 67.5 1.9 4.1E-05 40.9 0.2 19 55-73 140-158 (234)
183 PRK05035 electron transport co 67.4 1.9 4.1E-05 47.2 0.2 22 54-75 367-388 (695)
184 TIGR02910 sulfite_red_A sulfit 67.0 2.3 4.9E-05 42.5 0.6 17 56-72 219-235 (334)
185 TIGR02951 DMSO_dmsB DMSO reduc 66.9 3.2 7E-05 36.6 1.6 43 39-84 107-158 (161)
186 COG1148 HdrA Heterodisulfide r 66.8 2.1 4.6E-05 44.8 0.4 34 54-87 584-619 (622)
187 PRK08640 sdhB succinate dehydr 66.7 2.3 5E-05 40.6 0.6 19 55-73 150-168 (249)
188 TIGR03149 cyt_nit_nrfC cytochr 66.3 2.4 5.2E-05 39.8 0.6 24 55-78 150-183 (225)
189 PRK09476 napG quinol dehydroge 66.2 4.1 8.9E-05 39.0 2.2 26 50-75 129-162 (254)
190 KOG3256 NADH:ubiquinone oxidor 65.4 1.6 3.5E-05 39.2 -0.6 25 51-75 105-129 (212)
191 COG1144 Pyruvate:ferredoxin ox 65.1 3.3 7.2E-05 33.5 1.2 28 48-75 26-53 (91)
192 TIGR00276 iron-sulfur cluster 65.0 2 4.3E-05 41.8 -0.2 21 55-75 157-177 (282)
193 PRK13795 hypothetical protein; 64.9 2.4 5.2E-05 45.9 0.4 36 38-75 592-630 (636)
194 PRK09130 NADH dehydrogenase su 64.6 2.7 5.8E-05 45.9 0.7 21 58-78 186-206 (687)
195 TIGR00273 iron-sulfur cluster- 63.6 2.8 6.1E-05 43.2 0.6 18 55-72 291-308 (432)
196 PRK13984 putative oxidoreducta 63.5 4.3 9.3E-05 43.3 2.0 17 56-72 184-200 (604)
197 PRK09130 NADH dehydrogenase su 63.2 2.5 5.4E-05 46.1 0.2 21 52-72 140-160 (687)
198 PRK12576 succinate dehydrogena 63.1 3.1 6.7E-05 40.4 0.8 19 55-73 150-168 (279)
199 PRK08166 NADH dehydrogenase su 63.0 2.5 5.4E-05 47.1 0.1 21 50-70 142-162 (847)
200 PRK10330 formate dehydrogenase 62.9 4.2 9.2E-05 36.5 1.6 32 53-84 125-162 (181)
201 TIGR03290 CoB_CoM_SS_C CoB--Co 62.8 5.1 0.00011 34.7 2.0 19 55-73 44-62 (144)
202 PRK12386 fumarate reductase ir 62.6 3 6.6E-05 39.9 0.6 19 55-73 140-158 (251)
203 TIGR02486 RDH reductive dehalo 62.3 2.8 6.1E-05 41.4 0.3 22 56-77 204-225 (314)
204 COG3383 Uncharacterized anaero 61.8 1.9 4E-05 47.2 -1.1 21 52-72 144-164 (978)
205 TIGR02912 sulfite_red_C sulfit 61.2 2.9 6.3E-05 41.0 0.2 23 51-73 163-185 (314)
206 PRK10882 hydrogenase 2 protein 61.1 5.7 0.00012 39.6 2.2 47 39-86 155-214 (328)
207 PRK09129 NADH dehydrogenase su 60.8 3.6 7.8E-05 45.4 0.9 21 58-78 185-205 (776)
208 PRK12575 succinate dehydrogena 60.5 4.2 9.1E-05 38.6 1.1 18 56-73 200-217 (235)
209 PRK05950 sdhB succinate dehydr 60.4 6 0.00013 37.1 2.2 19 55-73 196-214 (232)
210 PRK05035 electron transport co 60.2 4.4 9.6E-05 44.3 1.4 63 11-73 341-425 (695)
211 PRK07860 NADH dehydrogenase su 60.1 3.4 7.4E-05 45.9 0.5 22 51-72 144-165 (797)
212 PRK13552 frdB fumarate reducta 59.9 3 6.6E-05 39.5 0.1 19 55-73 147-165 (239)
213 PRK08166 NADH dehydrogenase su 59.9 3.6 7.8E-05 45.9 0.7 21 58-78 190-210 (847)
214 TIGR01945 rnfC electron transp 59.7 3.7 8.1E-05 42.3 0.7 29 58-86 403-431 (435)
215 PRK12385 fumarate reductase ir 59.6 3.4 7.4E-05 39.3 0.4 18 55-72 145-162 (244)
216 TIGR03379 glycerol3P_GlpC glyc 58.8 4.1 9E-05 41.0 0.8 18 55-72 3-20 (397)
217 COG4656 RnfC Predicted NADH:ub 58.8 2.6 5.6E-05 44.2 -0.6 19 58-76 366-384 (529)
218 TIGR03287 methan_mark_16 putat 58.7 4.8 0.0001 41.0 1.3 28 49-76 294-323 (391)
219 PRK00783 DNA-directed RNA poly 58.2 3.7 8E-05 39.3 0.3 25 53-77 195-219 (263)
220 COG1034 NuoG NADH dehydrogenas 56.0 3.3 7.1E-05 45.2 -0.5 23 51-73 138-160 (693)
221 PF13484 Fer4_16: 4Fe-4S doubl 56.0 4.6 9.9E-05 29.9 0.5 23 50-72 39-67 (67)
222 PRK12769 putative oxidoreducta 55.3 9.9 0.00022 41.1 3.1 46 38-83 96-151 (654)
223 PRK12577 succinate dehydrogena 55.0 4.7 0.0001 40.1 0.5 17 56-72 151-167 (329)
224 PRK12575 succinate dehydrogena 54.4 4.7 0.0001 38.2 0.4 19 55-73 142-160 (235)
225 PLN00129 succinate dehydrogena 54.4 5 0.00011 39.0 0.6 16 57-72 187-202 (276)
226 cd07030 RNAP_D D subunit of Ar 54.1 4.1 8.9E-05 38.9 -0.1 21 56-76 168-188 (259)
227 COG1139 Uncharacterized conser 52.4 4.5 9.7E-05 41.6 -0.1 24 49-72 293-323 (459)
228 PRK12385 fumarate reductase ir 52.4 7.1 0.00015 37.1 1.2 18 56-73 202-219 (244)
229 PRK12386 fumarate reductase ir 52.3 7.4 0.00016 37.3 1.4 19 55-73 198-216 (251)
230 TIGR00273 iron-sulfur cluster- 52.2 7.5 0.00016 40.2 1.5 19 55-73 341-359 (432)
231 PRK05950 sdhB succinate dehydr 52.0 5.3 0.00012 37.5 0.3 19 55-73 139-157 (232)
232 PRK11168 glpC sn-glycerol-3-ph 51.3 9.9 0.00021 38.1 2.2 23 51-73 48-70 (396)
233 TIGR01936 nqrA NADH:ubiquinone 51.3 4.8 0.0001 41.8 -0.1 21 54-74 370-390 (447)
234 PRK08640 sdhB succinate dehydr 49.9 8.6 0.00019 36.7 1.4 18 56-73 208-225 (249)
235 PRK13552 frdB fumarate reducta 49.9 8.3 0.00018 36.6 1.3 18 56-73 205-222 (239)
236 PRK07570 succinate dehydrogena 49.0 7.8 0.00017 37.1 0.9 19 55-73 210-228 (250)
237 PRK12576 succinate dehydrogena 47.9 11 0.00025 36.5 1.9 19 55-73 204-222 (279)
238 PRK11274 glcF glycolate oxidas 47.7 11 0.00024 38.1 1.8 17 56-72 72-88 (407)
239 TIGR03336 IOR_alpha indolepyru 47.5 11 0.00023 40.5 1.8 25 49-74 571-595 (595)
240 PRK11274 glcF glycolate oxidas 46.7 6.9 0.00015 39.5 0.2 19 55-73 21-39 (407)
241 PRK05352 Na(+)-translocating N 46.6 7.5 0.00016 40.4 0.4 21 53-73 370-390 (448)
242 TIGR01660 narH nitrate reducta 46.4 11 0.00025 39.2 1.7 28 49-76 173-202 (492)
243 cd01916 ACS_1 Acetyl-CoA synth 46.0 8.6 0.00019 42.3 0.8 23 51-73 359-381 (731)
244 TIGR00314 cdhA CO dehydrogenas 45.3 8.2 0.00018 42.7 0.5 20 53-72 433-452 (784)
245 TIGR02745 ccoG_rdxA_fixG cytoc 45.0 6.3 0.00014 40.8 -0.4 15 57-71 255-269 (434)
246 TIGR03478 DMSO_red_II_bet DMSO 44.0 14 0.0003 36.8 1.8 27 50-76 122-150 (321)
247 PRK06259 succinate dehydrogena 44.0 9.2 0.0002 39.7 0.6 19 55-73 131-149 (486)
248 COG1600 Uncharacterized Fe-S p 43.9 7 0.00015 39.1 -0.3 20 57-76 185-204 (337)
249 TIGR03379 glycerol3P_GlpC glyc 43.7 15 0.00032 37.0 2.0 20 54-73 49-68 (397)
250 PLN00129 succinate dehydrogena 43.3 13 0.00028 36.1 1.5 19 55-73 242-260 (276)
251 PRK00941 acetyl-CoA decarbonyl 42.9 10 0.00022 42.0 0.8 23 51-73 398-420 (781)
252 PRK15033 tricarballylate utili 42.5 9.5 0.00021 38.9 0.4 16 56-71 66-81 (389)
253 TIGR00314 cdhA CO dehydrogenas 41.0 11 0.00025 41.6 0.8 20 54-73 396-415 (784)
254 COG0437 HybA Fe-S-cluster-cont 39.8 8.3 0.00018 35.8 -0.4 23 50-72 11-33 (203)
255 PF13592 HTH_33: Winged helix- 39.6 25 0.00055 25.7 2.3 33 100-134 10-42 (60)
256 TIGR01318 gltD_gamma_fam gluta 38.8 18 0.0004 37.4 1.9 39 50-88 33-81 (467)
257 PRK12577 succinate dehydrogena 37.7 15 0.00033 36.4 1.0 18 56-73 208-225 (329)
258 PTZ00305 NADH:ubiquinone oxido 36.5 13 0.00029 36.5 0.4 18 61-78 257-274 (297)
259 PF14691 Fer4_20: Dihydroprymi 36.3 12 0.00026 31.3 0.1 35 52-90 17-53 (111)
260 TIGR03315 Se_ygfK putative sel 36.2 16 0.00034 41.9 0.9 18 57-74 881-902 (1012)
261 PRK00941 acetyl-CoA decarbonyl 36.2 9.7 0.00021 42.1 -0.7 21 53-73 438-458 (781)
262 TIGR01582 FDH-beta formate deh 35.9 20 0.00043 35.0 1.5 22 54-75 88-112 (283)
263 PF09756 DDRGK: DDRGK domain; 35.9 49 0.0011 30.4 4.0 50 78-134 100-149 (188)
264 COG0348 NapH Polyferredoxin [E 34.6 12 0.00026 38.0 -0.2 16 58-73 246-261 (386)
265 COG0247 GlpC Fe-S oxidoreducta 34.4 14 0.00031 36.6 0.2 21 54-74 6-26 (388)
266 PF06574 FAD_syn: FAD syntheta 34.3 28 0.0006 30.8 2.0 62 90-153 38-100 (157)
267 PRK09853 putative selenate red 32.4 18 0.0004 41.3 0.7 22 53-74 882-907 (1019)
268 PRK07114 keto-hydroxyglutarate 31.0 3.9E+02 0.0085 25.1 9.3 129 80-284 6-135 (222)
269 PRK12810 gltD glutamate syntha 29.4 34 0.00073 35.4 2.0 41 49-89 36-86 (471)
270 COG0602 NrdG Organic radical a 29.1 1E+02 0.0022 28.7 4.9 75 52-136 25-108 (212)
271 PF12225 MTHFR_C: Methylene-te 28.9 25 0.00053 29.0 0.7 18 50-67 14-31 (97)
272 COG1139 Uncharacterized conser 27.9 36 0.00078 35.2 1.8 33 51-87 352-384 (459)
273 PF00403 HMA: Heavy-metal-asso 27.8 8.4 0.00018 27.9 -2.0 14 116-129 49-62 (62)
274 COG1105 FruK Fructose-1-phosph 27.3 1.5E+02 0.0032 29.5 5.9 54 72-136 109-168 (310)
275 PF02630 SCO1-SenC: SCO1/SenC; 26.9 33 0.00071 30.6 1.2 52 64-131 63-118 (174)
276 PRK13030 2-oxoacid ferredoxin 26.2 31 0.00068 40.1 1.2 24 49-72 654-678 (1159)
277 PF04914 DltD_C: DltD C-termin 26.0 1.2E+02 0.0027 26.0 4.6 58 77-135 36-96 (130)
278 PRK12778 putative bifunctional 24.8 39 0.00085 37.1 1.6 22 51-72 323-346 (752)
279 TIGR01316 gltA glutamate synth 24.7 40 0.00087 34.6 1.6 17 56-72 25-45 (449)
280 TIGR02484 CitB CitB domain pro 24.5 27 0.00059 35.4 0.2 18 55-72 46-63 (372)
281 PRK12831 putative oxidoreducta 23.3 47 0.001 34.3 1.8 38 51-88 34-81 (464)
282 PRK12771 putative glutamate sy 22.9 27 0.00058 37.0 -0.1 27 50-76 497-529 (564)
283 PF11576 DUF3236: Protein of u 22.7 50 0.0011 29.1 1.5 37 89-129 118-154 (154)
284 TIGR02826 RNR_activ_nrdG3 anae 22.4 2E+02 0.0043 25.1 5.3 79 48-136 14-97 (147)
285 TIGR00276 iron-sulfur cluster 21.7 42 0.0009 32.7 0.9 17 57-73 208-225 (282)
286 COG1152 CdhA CO dehydrogenase/ 21.5 35 0.00077 36.6 0.4 19 191-209 566-584 (772)
287 KOG1611 Predicted short chain- 21.3 50 0.0011 31.5 1.3 15 166-180 191-205 (249)
288 PRK09193 indolepyruvate ferred 21.0 46 0.00099 38.8 1.2 24 49-72 668-692 (1165)
289 COG1152 CdhA CO dehydrogenase/ 20.1 41 0.00088 36.2 0.5 18 56-73 399-416 (772)
No 1
>KOG2439 consensus Nuclear architecture related protein [Nuclear structure]
Probab=100.00 E-value=7.7e-83 Score=618.36 Aligned_cols=327 Identities=49% Similarity=0.829 Sum_probs=290.4
Q ss_pred cccccCCCCCcccCCCcccccccccCCCCCCC-------CCCCccccc---cCCCceeeccCCcccCCcccccccccccc
Q 017974 6 SPTLRIGDLSDFIAPSQNCVVSLKKATFKNPD-------KPQVSTSSK---QQAEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 6 s~~~~~~~l~d~i~p~~~ci~p~~~~~~~~~~-------~~~~~~~~~---~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
|++|+++||||||+|+++||+|++....+.+. ........+ .+.++|+|+++|||||+||||++|+++++
T Consensus 1 s~~l~l~dlnDFi~p~~~CikP~~~~k~~~~~~~~v~~d~~~~v~~e~g~t~~l~~~kISLsDCLACSGCITSaEtVlls 80 (459)
T KOG2439|consen 1 SALLRLSDLNDFIAPSLACIKPLQVSKTKKKKNIRVDADGPYEVIKEKGETHQLEKVKISLSDCLACSGCITSAETVLLS 80 (459)
T ss_pred CCcccccchhhhhchHHHhccchhhcccccCCcccccCCCcceeecCCCccccccceeeeHHhhhhccCccchhhhhhhh
Confidence 78999999999999999999999874432211 112222222 47789999999999999999999999999
Q ss_pred cccHHHHHHhhcCCC---eEEEEeCcchhhHHhhHhCCChHHHHHHHHHHHHHcCCeEEEechhHHHHHHHHHHHHHHHH
Q 017974 76 KQSLDEFLSNINKGK---AVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIAR 152 (363)
Q Consensus 76 ~~~~~~~~~~L~~~k---~~V~sisP~~~~sl~~~f~~~~~~~~~~l~~~Lk~LGf~~V~Dta~~adi~~~e~~~ef~~~ 152 (363)
+|+..+|++.|.+.| .+|+++|||+|+|||++||++..++..+|..|+|+|||++|+||++++++++.|+.+||+++
T Consensus 81 ~Qs~~~~~k~l~~~k~~~~lvvsvSPQ~~~slAa~~gls~~e~~~~L~~F~kklgvhyv~DT~~sR~~sl~es~~Efv~~ 160 (459)
T KOG2439|consen 81 EQSHKEFLKVLQKSKQQKVLVVSVSPQSRASLAAKYGLSLREAALRLTSFFKKLGVHYVVDTSFSRDFSLSESYEEFVAR 160 (459)
T ss_pred hhhHHHHHHhhhhccccceEEEecChhHHHHHHHHhCCCHHHHHHHHHHHHHhcCeeEEeehHHHHHHHHHHHHHHHHHH
Confidence 999999999887765 88999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhccCcccccCCCCCceecCChhHHHHHHhhcCCCccCCCCCCCCHHHHHHHHHHHHHhHhhCCCCCCeEEEEEEecc
Q 017974 153 YKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232 (363)
Q Consensus 153 ~~~~~~~~~~~~~~~~PlisS~CPg~V~yiEk~~~p~Li~~Ls~v~SP~~i~g~liK~~~~~~~~~~~~~i~~V~I~PC~ 232 (363)
++.+.. ....||++|+|||||||+||++ |.||||||+++||||++|++||.++.++.++.|+++|||++|||+
T Consensus 161 ~r~~~~------~~~~PlLsSaCPG~v~YaEkt~-~~Lip~ls~vkSPQQi~Gslikd~~~~q~~l~p~~v~hvsvMPCf 233 (459)
T KOG2439|consen 161 YRQHSE------EERTPLLSSACPGWVCYAEKTH-GRLIPHLSRVKSPQQIMGSLIKDFFASQQSLSPEKVFHVSVMPCF 233 (459)
T ss_pred hhcccc------cccccchhhcCCceeEEeeccc-cccchhhhccCCHHHhhhHHHHHHHHHhcCCCccceeeEeecccc
Confidence 875322 3456999999999999999999 889999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhhhhhccccchhccccCCCCCCCceEEECHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCccccCCCCc
Q 017974 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 312 (363)
Q Consensus 233 aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLT~~El~~~l~~~~i~l~~~~~~~~d~~~~~~s~~g~~~~~~~~S 312 (363)
|||+||+|++|... +..++|||||++||.++|++.+++++..... .|.+++..+.....+..||+|
T Consensus 234 DKKLEAsR~~f~~~-------------~~r~~DcVlT~~Ei~k~l~e~~~~l~~~~~~-~d~l~~~~~~~~~~~~~GgsS 299 (459)
T KOG2439|consen 234 DKKLEASREEFKEH-------------GVRDVDCVLTTGEIFKLLEELDFDLPVRDAE-VDTLPSGLSRETVTSNDGGSS 299 (459)
T ss_pred cHhhhccchhhhcc-------------CCcccceEeehHHHHHHHHhcCcccccccch-hhcccccccccceeeccCCCC
Confidence 99999999999621 3578999999999999999999999877654 555555555556678889999
Q ss_pred chHHHHHHHHHHHHhcCCccccccceeeeeCCCeEEEEEEec
Q 017974 313 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVS 354 (363)
Q Consensus 313 GG~~e~i~~~~~k~l~~~~i~~~l~~~~~rn~d~~E~~l~~~ 354 (363)
|||+++|++++++++||.++. +++++.+||+||+|+|++.+
T Consensus 300 GGYa~~i~r~aak~lfg~~v~-~~t~k~~rN~Df~e~tl~~~ 340 (459)
T KOG2439|consen 300 GGYAEHIFRHAAKELFGEIVE-PVTYKELRNSDFREVTLEKN 340 (459)
T ss_pred cchHHHHHHHHHHHhcCCccc-chhhhhhccccceeeeeecC
Confidence 999999999999999999986 89999999999999999965
No 2
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=100.00 E-value=5e-63 Score=493.21 Aligned_cols=276 Identities=33% Similarity=0.631 Sum_probs=249.9
Q ss_pred eeeccCCcccCCccccccccccccc-ccHHHHHHhhcCCCeE-EEEeCcchhhHHhhHhCCChHH-HHHHHHHHHHHcCC
Q 017974 52 VKISLKDCLACSGCITSAETVMLEK-QSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGV 128 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~~-~~~~~~~~~L~~~k~~-V~sisP~~~~sl~~~f~~~~~~-~~~~l~~~Lk~LGf 128 (363)
..|+.++|+.||+|+++||++++.. .+++++++.|++++.+ ++++||+++++++.+|+.+++. ...+|..+||+|||
T Consensus 45 ~~id~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~v~~~l~~~~~~~v~~~ap~~~~s~ge~~~~~~~~~~~~~l~~~lk~lGf 124 (374)
T TIGR02512 45 RLLDESNCIGCGQCSLVCPVGAITEKDHVDRVLKALADPKKVVVVQIAPAVRVALGEEFGMPIGTDVTGKMVAALRKLGF 124 (374)
T ss_pred cccCcccCcCccCHHHhCCCChhhhhccHHHHHHHhccccceEEEEeChHHHHHHHHHhCCCccchHHHHHHHHHHHcCC
Confidence 4588999999999999999998874 4578899988877554 8999999999999999987533 46899999999999
Q ss_pred eEEEechhHHHHHHHHHHHHHHHHHhhhccCcccccCCCCCceecCChhHHHHHHhhcCCCccCCCCCCCCHHHHHHHHH
Q 017974 129 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 208 (363)
Q Consensus 129 ~~V~Dta~~adi~~~e~~~ef~~~~~~~~~~~~~~~~~~~PlisS~CPg~V~yiEk~~~p~Li~~Ls~v~SP~~i~g~li 208 (363)
++|+||++++|+++.|++.||++++++ ...+|||||+|||||+||||+| |+|+|||||++|||+++|+++
T Consensus 125 ~~v~et~~~ad~~~~e~~~e~i~~~~~---------~~~~p~itS~CP~~v~~iek~~-P~li~~ls~v~SP~~~~g~~i 194 (374)
T TIGR02512 125 DYVFDTNFAADLTIMEEGTELLERLKN---------GGKLPMFTSCCPGWVNYAEKYY-PELLPNLSSCKSPQQMLGAVI 194 (374)
T ss_pred CEEEECcHHHHHHHHHHHHHHHHHhhc---------CCCCCeEecCCHHHHHHHHHHC-hhhhccccCCCChHHHHHHHH
Confidence 999999999999999999999998752 3457999999999999999999 999999999999999999999
Q ss_pred HHHHhHhhCCCCCCeEEEEEEeccchhhhhhhhhhhhccccchhccccCCCCCCCceEEECHHHHHHHHHhcCCCCCCCC
Q 017974 209 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288 (363)
Q Consensus 209 K~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLT~~El~~~l~~~~i~l~~~~ 288 (363)
|+++++++++++++++|||||||+|||+||.|+++... +.++||+||||+||.+||++++|++.+++
T Consensus 195 K~~~~~~~~~~~~~i~~v~i~PC~aKK~Ea~r~~~~~~-------------~~~~vD~vlT~~El~~~~~~~~i~~~~~~ 261 (374)
T TIGR02512 195 KTYWAKKMGIDPEDVYVVSIMPCTAKKDEAQRPELKSD-------------GYRDVDAVLTTRELARMIKEAGIDFAKLP 261 (374)
T ss_pred HHHhHHHcCCCcccEEEEEEECcccchhhhcCchhccc-------------CCCcccEEeeHHHHHHHHHHcCCChhhCC
Confidence 99999999999999999999999999999999987421 24789999999999999999999999999
Q ss_pred CCcccccCCCCCCCCccccCCCCcchHHHHHHHHHHHHhcCCccccccceeeeeCC-CeEEEEEEec
Q 017974 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVS 354 (363)
Q Consensus 289 ~~~~d~~~~~~s~~g~~~~~~~~SGG~~e~i~~~~~k~l~~~~i~~~l~~~~~rn~-d~~E~~l~~~ 354 (363)
+.++|.++...++.+++|+. |||+++++++++++.++|..+ ..++|+.+||. ||+|+++..+
T Consensus 262 ~~~~d~~~~~~~~~~~~f~~---sGG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~ 324 (374)
T TIGR02512 262 DSQFDSPFGEYSGAGAIFGA---TGGVMEAALRTAYEIVTGKEL-ELIEFKAVRGLDGVKEATVDIG 324 (374)
T ss_pred CcccccccccCCccccccCC---cccHHHHHHHHHHHHhcCCCC-cccceeeecCCCCeEEEEEEEC
Confidence 99999887777778899988 999999999999999999887 47899999996 8999998854
No 3
>COG4624 Iron only hydrogenase large subunit, C-terminal domain [General function prediction only]
Probab=100.00 E-value=2.9e-62 Score=475.28 Aligned_cols=255 Identities=41% Similarity=0.714 Sum_probs=233.3
Q ss_pred cCCCceeeccCCcccCCcccccccccccccccHHHHHHhhcC---CCeEEEEeCcchhhHHhhHhCCChHHHH-HHHHHH
Q 017974 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINK---GKAVIISLSPQSRASLAEHFGISPLQVF-KKLTTF 122 (363)
Q Consensus 47 ~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~~~~~~~~~L~~---~k~~V~sisP~~~~sl~~~f~~~~~~~~-~~l~~~ 122 (363)
...+++.+.++||++|++|+++||..++..++...++..|++ .+.++++.|||+|++++..||++.++.. .++..|
T Consensus 24 ~~~~~~~~~lsdc~~c~gci~s~~~~li~~~s~~~~~~~le~~~~~k~v~v~~apsvR~al~~~~gl~~~~~~a~~~~~f 103 (411)
T COG4624 24 SMLEKISISLSDCLACSGCITSCEVKAISLQSGKKVLEELEDLFCDKIVLVSNAPSVRAALAEEFGLSEGEAVAVLMSFF 103 (411)
T ss_pred ecccccccchhhhhhhhccccCChHHhhhhcchHHHHHHhhccccceEEEecCCHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 578899999999999999999999999999999999999887 6889999999999999999999987775 678889
Q ss_pred HHHcCCeEEEechhHHHHHHHHHHHHHHHHHhhhccCcccccCCCCCceecCChhHHHHHHhhcCCCccCCCCCCCCHHH
Q 017974 123 LKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 202 (363)
Q Consensus 123 Lk~LGf~~V~Dta~~adi~~~e~~~ef~~~~~~~~~~~~~~~~~~~PlisS~CPg~V~yiEk~~~p~Li~~Ls~v~SP~~ 202 (363)
||++||++|+||++|||+++.|+++||.+|+++ +..+|||||||||||+|+||+| |+|++|||+|+||||
T Consensus 104 ~k~~gf~~vvdt~fgad~vi~eea~Ef~~r~~~---------n~~lP~~tscCPgwV~~~Ekt~-P~Ll~~LS~vkSPQq 173 (411)
T COG4624 104 LKKLGFDKVVDTNFGADMVIMEEAAEFLERVKK---------NDDLPLFTSCCPGWVNYAEKTY-PNLLPNLSSVKSPQQ 173 (411)
T ss_pred HHHcChHhhhhhhhccchHHHHHHHHHHHHHhc---------CCCCceeeccChHHHHHHHHhh-HHHHhhccccCCHHH
Confidence 999999999999999999999999999888875 5789999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHhHhhCCCCCCeEEEEEEeccchhhhhhhhhhhhccccchhccccCCCCCCCceEEECHHHHHHHHHhcCC
Q 017974 203 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV 282 (363)
Q Consensus 203 i~g~liK~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLT~~El~~~l~~~~i 282 (363)
++|+++|++|++++|+.|+++|||+||||+|||+||.|++. + + .+||+||||+||.++|+..+|
T Consensus 174 ~~g~~iK~~~~~~~~~~~e~~~~VsiMPC~aKK~Ea~r~~~-n--------------g-~~iD~vLTtrEL~~ml~~l~i 237 (411)
T COG4624 174 ALGSLIKTYYAEKLGIAPEDVYHVSIMPCIAKKLEADRDED-N--------------G-RAIDFVLTTRELVKMLKELRI 237 (411)
T ss_pred HHHHHHHHHhhhhcCCCccceeEEEEecchhhhhhhcCccc-c--------------C-cceeEEecHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999821 1 2 689999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCCCCccccCCCCcchHHHHHHHHHHHHhcCCcc
Q 017974 283 NFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVI 332 (363)
Q Consensus 283 ~l~~~~~~~~d~~~~~~s~~g~~~~~~~~SGG~~e~i~~~~~k~l~~~~i 332 (363)
|+..+|+.++|.+.+..++.+.+||. +|||++++.+. +.+++..+
T Consensus 238 d~~~lp~~~~~s~~g~~sga~~lfG~---tGgv~e~v~~~--~l~~~~~~ 282 (411)
T COG4624 238 DFARLPDGHYDSPAGFSSGAGLLFGS---TGGVMEAVLRT--RLLHDKHI 282 (411)
T ss_pred CHhHCCCCCccccccccccccccCCC---cccEEEEeecc--ccccccch
Confidence 99999999999988888877777776 99999999864 34444444
No 4
>PF02906 Fe_hyd_lg_C: Iron only hydrogenase large subunit, C-terminal domain; InterPro: IPR004108 Proteins containing this domain may be involved in the mechanism of biological hydrogen activation and contain 4FE-4S clusters. They can use molecular hydrogen for the reduction of a variety of substances.; PDB: 3LX4_A 1HFE_L 1GX7_A 1E08_A 1C4C_A 1FEH_A 3C8Y_A 1C4A_A.
Probab=100.00 E-value=2.6e-60 Score=457.87 Aligned_cols=238 Identities=40% Similarity=0.738 Sum_probs=201.9
Q ss_pred CeEEEEeCcchhhHHhhHhCCChHHHHHHHHHHHHHcCCeEEEechhHHHHHHHHHHHHHHHHHhhhccCcccccCCCCC
Q 017974 90 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169 (363)
Q Consensus 90 k~~V~sisP~~~~sl~~~f~~~~~~~~~~l~~~Lk~LGf~~V~Dta~~adi~~~e~~~ef~~~~~~~~~~~~~~~~~~~P 169 (363)
|.+||+||||++++|+..|++++++++++|..+||+|||++|+||++|||+++.++++||++++.+ .+++|
T Consensus 1 K~vva~iaPs~~~~f~~~~~~~~~~~~~~l~~~Lk~lGf~~V~d~a~gadl~~~~~~~e~~~~~~~---------~~~~p 71 (285)
T PF02906_consen 1 KKVVASIAPSFRAQFAEKFGLSPGEAPGQLVSALKKLGFDYVFDTAFGADLVILEEAEEFIERKEE---------GKPLP 71 (285)
T ss_dssp -EEEEEE-HHHHHTGGGGGT--TTSSHHHHHHHHHHTT-SEEEEHHHHHHHHHHHHHHHHHHHHCC---------TSSSS
T ss_pred CEEEEEECchhHHHHHhHhCcChhhHHHHHHHHHHHcCCCEEEECHHHHHHHHHHHHHHHHHhhcc---------cCCCc
Confidence 579999999999999999999999999999999999999999999999999999999999998752 44679
Q ss_pred ceecCChhHHHHHHhhcCCCccCCCCCCCCHHHHHHHHHHHHHhHhhCCCCCCeEEEEEEeccchhhhhhhhhhhhcccc
Q 017974 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 249 (363)
Q Consensus 170 lisS~CPg~V~yiEk~~~p~Li~~Ls~v~SP~~i~g~liK~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~~~~~~~~~ 249 (363)
||||+|||||+||||+| |+|+|||||++|||+++|+++|+++.++.++.+++++|||||||+|||+||.|+++..
T Consensus 72 ~itS~CP~~V~~iek~~-P~li~~ls~v~SP~~~~g~~~K~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~~~~~---- 146 (285)
T PF02906_consen 72 MITSCCPGWVCYIEKYY-PELIPNLSPVKSPMQIMGRLIKKYFAEESGIKPPDIYVVFIMPCIAKKLEASRPEFSG---- 146 (285)
T ss_dssp EE-TTSHHHHHHHHHH--GGGGGGB-SB-THHHHHHHHHTTHHHHHCT--GGGEEEEEEES-SHHHHHHTSTTCEC----
T ss_pred eEecccHHHHHHHHHhC-cccccccCCCccHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEcCccccccccCccccC----
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999999998742
Q ss_pred chhccccCCCCCCCceEEECHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCccccCCCCcchHHHHHHHHHHHHhcC
Q 017974 250 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 329 (363)
Q Consensus 250 ~~~~~~~~~~~~~~VD~VLT~~El~~~l~~~~i~l~~~~~~~~d~~~~~~s~~g~~~~~~~~SGG~~e~i~~~~~k~l~~ 329 (363)
+.++||+||||+||.+||++.+||+.++++.++|.++...++.+++|+. |||+++++++++++.++|
T Consensus 147 ----------~~~~vD~VLT~~El~~~l~~~~i~~~~~~~~~~d~~~~~~s~~~~~f~~---sGG~~~~v~~~~~~~~~~ 213 (285)
T PF02906_consen 147 ----------GSPDVDYVLTFEELAELLKEKGIDLAELEPEPFDNPFGESSGAGRIFGS---SGGVAEAVLRYAAEKLFG 213 (285)
T ss_dssp ----------TCESSSEEEEHHHHHHHHHHTT--GGGSS--B--CTTSSSCHHHCCCCS---TTHHHHHHHHHHHHHHHS
T ss_pred ----------CCcccCEechHHHHHHHHHHcCCChhHCCCccccchHHHhhhhhhcccc---CchHHHHHHHHHHHHhcC
Confidence 1358999999999999999999999999999999887777777888887 999999999999999999
Q ss_pred CccccccceeeeeCC-CeEEEEEEecc
Q 017974 330 KVIEGHLEFKTIRNS-DFREVALEVSF 355 (363)
Q Consensus 330 ~~i~~~l~~~~~rn~-d~~E~~l~~~~ 355 (363)
.+++ .++++.+||. |++|+++....
T Consensus 214 ~~~~-~~~~~~~r~~~~~~e~~~~~g~ 239 (285)
T PF02906_consen 214 EDLP-NVEIEKVRGKEDIKEATVEIGK 239 (285)
T ss_dssp STTS--S--GGGTSSTSEEEEEEEETT
T ss_pred CCCC-cceeEeccCCCCeEEEEEeccc
Confidence 9986 6899999995 89999988743
No 5
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.65 E-value=9.6e-06 Score=49.70 Aligned_cols=24 Identities=21% Similarity=0.600 Sum_probs=21.7
Q ss_pred ceeeccCCcccCCccccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~i 74 (363)
+++|+.++|++||.|+.+||+++|
T Consensus 1 ~~~id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 1 KVVIDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred CcEEChhhCcChhHHHHhcchhcC
Confidence 478999999999999999998764
No 6
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=97.39 E-value=5.3e-05 Score=46.33 Aligned_cols=24 Identities=17% Similarity=0.527 Sum_probs=20.6
Q ss_pred eeeccCCcccCCcccccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
+.|+.+.|++||.|+.+||+++|+
T Consensus 1 ~~id~~~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 1 PVIDPDKCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp EEEETTTSSS-THHHHHSTTSSEE
T ss_pred CEEchHHCCCcchhhhhcccccCC
Confidence 468999999999999999999874
No 7
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=96.99 E-value=0.00028 Score=63.19 Aligned_cols=48 Identities=13% Similarity=0.287 Sum_probs=42.3
Q ss_pred CCCCCCCCCCCccccccCCCceeeccCCcccCCcccccccccccccccH
Q 017974 31 ATFKNPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSL 79 (363)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~~~ 79 (363)
.++++...+++.+|.. .++.+.++.++||+||-|+.+||+++|+..+.
T Consensus 57 edaPC~~vCP~~AI~~-~~~~v~V~~ekCiGC~~C~~aCPfGai~~~~~ 104 (165)
T COG1142 57 EDAPCAEVCPVGAITR-DDGAVQVDEEKCIGCKLCVVACPFGAITMVSY 104 (165)
T ss_pred CCcchhhhCchhheee-cCCceEEchhhccCcchhhhcCCcceEEEEee
Confidence 5677777899999995 49999999999999999999999999886664
No 8
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.88 E-value=0.00037 Score=74.75 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=57.2
Q ss_pred cCCcccCC-------cccccccccccccccHHHHHHhh--cCCCeEEEEeCcchhhHHhhHhCCChHHH-HHHHHHHHHH
Q 017974 56 LKDCLACS-------GCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKS 125 (363)
Q Consensus 56 ~~dCi~Cg-------~Cit~c~~~~i~~~~~~~~~~~L--~~~k~~V~sisP~~~~sl~~~f~~~~~~~-~~~l~~~Lk~ 125 (363)
..+|..|+ .|+.+||+++|...+..++.... +..+.+++++||++|.++...|+..++.. +.++...+|.
T Consensus 109 ~~kC~~C~~~~~~~~~Cv~~CP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~r~~~~~~~~~~R~ 188 (639)
T PRK12809 109 AQKCDLCNQRSSGTQACIEVCPTQALRLMDDKGLQQIKVARQRKTAAGKASSDAQPSRSAALLPVNSRKGADKISASERK 188 (639)
T ss_pred cccccCCcccCCCCChhhhhCccceEEEechHHHHHHHHHhhhhhcccccCcccccchHHHhCCCccccCcccCCHHHHh
Confidence 35677776 47777777776654433232222 33467889999999999999999875433 4788899999
Q ss_pred cCCeEEEec
Q 017974 126 LGVKSIFDT 134 (363)
Q Consensus 126 LGf~~V~Dt 134 (363)
++|++|++.
T Consensus 189 ~~f~Ev~~~ 197 (639)
T PRK12809 189 THFGEIYCG 197 (639)
T ss_pred cCHHHhhcc
Confidence 999998874
No 9
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=96.47 E-value=0.0016 Score=48.47 Aligned_cols=34 Identities=12% Similarity=0.414 Sum_probs=22.8
Q ss_pred ccccccCCCceeeccCCcccCCcccccccc-cccc
Q 017974 42 STSSKQQAEPVKISLKDCLACSGCITSAET-VMLE 75 (363)
Q Consensus 42 ~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~-~~i~ 75 (363)
.++....++++.++.++|++||.|+.+||+ .+|+
T Consensus 24 ~~i~~~~~~~~~v~~~~C~GCg~C~~~CPv~~AI~ 58 (59)
T PF14697_consen 24 DAIEVDEGKKVPVNPDKCIGCGLCVKVCPVKDAIT 58 (59)
T ss_dssp S-ECCTTTTSSECE-TT--S-SCCCCCSSSTTSEE
T ss_pred eeEEecCCeeEEeccccCcCcCcccccCCCccCCC
Confidence 455555666778889999999999999996 8875
No 10
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.35 E-value=0.0014 Score=39.28 Aligned_cols=20 Identities=25% Similarity=0.773 Sum_probs=17.9
Q ss_pred eeeccCCcccCCcccccccc
Q 017974 52 VKISLKDCLACSGCITSAET 71 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~ 71 (363)
..|+.++|++|+.|+.+||.
T Consensus 3 ~~iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 3 MVIDLERCIGCGACEVACPV 22 (22)
T ss_pred eEEccccccCchhHHHhhCc
Confidence 46899999999999999984
No 11
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=96.07 E-value=0.0017 Score=53.31 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=31.7
Q ss_pred CCCCccccccC-CCceeeccCCcccCCccccccccccccccc
Q 017974 38 KPQVSTSSKQQ-AEPVKISLKDCLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 38 ~~~~~~~~~~~-~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~~ 78 (363)
.++..++.+.. +|.+.|+.+.|++||.|+.+||++++..+.
T Consensus 20 ~CP~~Ai~~~~~~G~V~id~~~CigC~~C~~aCP~~ai~~~~ 61 (98)
T PF13247_consen 20 ACPTGAIYKDPEDGIVVIDEDKCIGCGYCVEACPYGAIRFDP 61 (98)
T ss_dssp HCTTTSEEEETTTS-EEE-TTTCCTHHHHHHH-TTS-EEEET
T ss_pred hCCccceEEEcCCCeEEechhhccCchhhhhhhccCcceeec
Confidence 47888888765 899999999999999999999999876443
No 12
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=95.93 E-value=0.0041 Score=57.54 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=38.8
Q ss_pred CCCCCCCCCCCccccccC-CCceeeccCCcccCCcccccccccccc
Q 017974 31 ATFKNPDKPQVSTSSKQQ-AEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~-~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.++.+...+|..+..+.+ +|-|.++.+.||+||-|+.+||+++..
T Consensus 73 ~~ppCv~vCPtgA~~k~~~dGiV~vd~d~CIGC~yCi~ACPyga~~ 118 (203)
T COG0437 73 EDPPCVKVCPTGALFKREEDGIVLVDKDLCIGCGYCIAACPYGAPQ 118 (203)
T ss_pred CCCcccccCCCcceEEecCCCEEEecCCcccCchHHHhhCCCCCce
Confidence 345566678999888775 999999999999999999999999854
No 13
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=95.85 E-value=0.0036 Score=46.60 Aligned_cols=22 Identities=18% Similarity=0.579 Sum_probs=15.2
Q ss_pred eeeccCCcccCCcccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~ 73 (363)
|.|+.++||+||.|+.+||.++
T Consensus 1 A~Id~~~Ci~Cg~C~~~Cp~~~ 22 (59)
T PF14697_consen 1 AVIDEDKCIGCGKCVRACPDGA 22 (59)
T ss_dssp EEE-TTT----SCCCHHCCCCS
T ss_pred CEECcccccChhhHHhHcCccc
Confidence 6899999999999999999854
No 14
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=95.62 E-value=0.0059 Score=49.94 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=32.8
Q ss_pred CCCCccccccCCCceeeccCCcccCCcccccccccc
Q 017974 38 KPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 38 ~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~ 73 (363)
.||..++.+.++|.+.|+.+.||.||.|+.+|+...
T Consensus 42 aCPagA~~~~e~G~V~vd~e~CigCg~C~~~C~~~~ 77 (95)
T PRK15449 42 ACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSA 77 (95)
T ss_pred HCCHhhcEeCCCCCEEEcCCCCCcchhhhhhcCCCC
Confidence 488889987789999999999999999999998875
No 15
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=95.57 E-value=0.0066 Score=34.06 Aligned_cols=15 Identities=27% Similarity=0.979 Sum_probs=13.9
Q ss_pred CCcccCCcccccccc
Q 017974 57 KDCLACSGCITSAET 71 (363)
Q Consensus 57 ~dCi~Cg~Cit~c~~ 71 (363)
+.|++|+.|+.+||+
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 689999999999996
No 16
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=95.56 E-value=0.0092 Score=57.65 Aligned_cols=95 Identities=15% Similarity=0.218 Sum_probs=55.7
Q ss_pred CCCCcccc----ccCCCceeeccCCcccCCccccccccccccc----ccHHHHHHhhcCCCeEEEEeCcchhhHHhhHhC
Q 017974 38 KPQVSTSS----KQQAEPVKISLKDCLACSGCITSAETVMLEK----QSLDEFLSNINKGKAVIISLSPQSRASLAEHFG 109 (363)
Q Consensus 38 ~~~~~~~~----~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~----~~~~~~~~~L~~~k~~V~sisP~~~~sl~~~f~ 109 (363)
.|+..++. ......+.+....|..||.|+.+||+.++.. .+.+++++.+.......-.-.+. +.|.+ |
T Consensus 59 ~Cp~~a~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~g~~~t~eel~~~i~~~~~~~~~~~~~--V~~sG--G 134 (295)
T TIGR02494 59 VCPAGTARLSELADGRNRIIIRREKCTHCGKCTEACPSGALSIVGEEMTVEEVMRVVLRDSIFYRNSGGG--VTLSG--G 134 (295)
T ss_pred hCcccccccccccCCCcceeechhhcCchhHhhccCcHhHHhhhccCCcHHHHHHHHHHHHHhcccCCCc--EEeeC--c
Confidence 45555543 1223467888899999999999999988754 25677777665432111000010 11221 3
Q ss_pred CChH--HHHHHHHHHHHHcCCeEEEechh
Q 017974 110 ISPL--QVFKKLTTFLKSLGVKSIFDTSC 136 (363)
Q Consensus 110 ~~~~--~~~~~l~~~Lk~LGf~~V~Dta~ 136 (363)
.+.. +....+...+|+.|+...++|+=
T Consensus 135 EPll~~~~l~~l~~~~k~~g~~~~i~TnG 163 (295)
T TIGR02494 135 EPLLQPEFALALLQACHERGIHTAVETSG 163 (295)
T ss_pred chhchHHHHHHHHHHHHHcCCcEeeeCCC
Confidence 3211 11246778888899988888873
No 17
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=95.52 E-value=0.0071 Score=58.90 Aligned_cols=36 Identities=19% Similarity=0.446 Sum_probs=30.3
Q ss_pred CCCCccccccCCCceeeccCCcccCCcccccccccccc
Q 017974 38 KPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 38 ~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.||+.++... .-++|..+.|++||+|+++||+++++
T Consensus 204 ~cp~~Ai~~~--~~~~I~~~~ci~c~~c~~ac~~gav~ 239 (354)
T COG2768 204 ICPVGAITLT--KVVKIDYEKCIGCGQCMEACPYGAVD 239 (354)
T ss_pred hCCCcceecc--cceeechhhccchhhhhhhccCcccc
Confidence 3788888743 67899999999999999999999865
No 18
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=95.41 E-value=0.0049 Score=44.34 Aligned_cols=20 Identities=20% Similarity=0.762 Sum_probs=14.8
Q ss_pred ccCCcccCCccccccccccc
Q 017974 55 SLKDCLACSGCITSAETVML 74 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~i 74 (363)
..++|+.||.|+.+||+.||
T Consensus 36 ~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 36 NAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp TGGG--TTCHHHHHSTTT-E
T ss_pred CCCccccHhHHHHHcchhhC
Confidence 56689999999999999875
No 19
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.07 E-value=0.0054 Score=33.38 Aligned_cols=15 Identities=27% Similarity=0.780 Sum_probs=13.5
Q ss_pred cccCCcccccccccc
Q 017974 59 CLACSGCITSAETVM 73 (363)
Q Consensus 59 Ci~Cg~Cit~c~~~~ 73 (363)
|..||.|+.+||++|
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 889999999999874
No 20
>PRK13409 putative ATPase RIL; Provisional
Probab=94.81 E-value=0.011 Score=62.94 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=28.3
Q ss_pred cCCCceeeccCCcccCCccccccccccccccc
Q 017974 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 47 ~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~~ 78 (363)
..++++.|+++.||+||-||..||+.||+--+
T Consensus 39 ~~~~~~~~~e~~c~~c~~c~~~cp~~a~~i~~ 70 (590)
T PRK13409 39 EDDGKPVISEELCIGCGICVKKCPFDAISIVN 70 (590)
T ss_pred CCCCCceeeHhhccccccccccCCcceEEEee
Confidence 46789999999999999999999999877544
No 21
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=94.63 E-value=0.013 Score=41.85 Aligned_cols=21 Identities=19% Similarity=0.691 Sum_probs=8.7
Q ss_pred ceeeccCCcccCCcccccccc
Q 017974 51 PVKISLKDCLACSGCITSAET 71 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~ 71 (363)
|+.|+.+.|++||.|+++||.
T Consensus 1 ki~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 1 KIVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp -----TT------TTGGG-TT
T ss_pred CCccCcccCcCCcChHHHccc
Confidence 568899999999999999998
No 22
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=94.31 E-value=0.014 Score=57.47 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=25.4
Q ss_pred CCCCcccccc-CCCceeeccCCcccCCcccccccccccc
Q 017974 38 KPQVSTSSKQ-QAEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 38 ~~~~~~~~~~-~~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.|+..++.+. .+|.+.|+.++|++||.|+.+||++++.
T Consensus 142 aCPtgAI~k~eedGiV~ID~ekCiGCg~Cv~ACPygAi~ 180 (321)
T TIGR03478 142 ACPTGAIYKREEDGIVLVDQERCKGYRYCVEACPYKKVY 180 (321)
T ss_pred hCCcCcEEEecCCCeEEECHHHCcchHHHHHhCCCCCcE
Confidence 4566666433 3566777777777777777777777643
No 23
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=94.30 E-value=0.021 Score=47.37 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=27.4
Q ss_pred CCCCccccccCCCceeeccCCcccCCcccccccccccc
Q 017974 38 KPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 38 ~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.++..++....++...++.++|+.||.|+.+||+.+|+
T Consensus 62 ~CP~~ai~~~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~ 99 (105)
T PRK09624 62 YCPEPAIYLDEEGYPVFDYDYCKGCGICANECPTKAIE 99 (105)
T ss_pred hCCHhhEEecCCCcEEECchhCCCcCchhhhcCcCcEE
Confidence 45555555444455678888888888888888888765
No 24
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=94.28 E-value=0.023 Score=49.08 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=10.3
Q ss_pred eeccCCcccCCcccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~ 73 (363)
.|..++|+.||.|+.+||+.+
T Consensus 85 ~i~~~~C~~Cg~Cv~vCP~~a 105 (133)
T PRK09625 85 GVDYSHCKGCGVCVEVCPTNP 105 (133)
T ss_pred EeCcCcCcChhHHHHHCCcCc
Confidence 344445555555555555443
No 25
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=94.16 E-value=0.017 Score=59.34 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=35.8
Q ss_pred CCCCCCCCcccccc-CCCceeeccCCcccCCcccccccccccccc
Q 017974 34 KNPDKPQVSTSSKQ-QAEPVKISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 34 ~~~~~~~~~~~~~~-~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
.+...|+..++.+. .++.+.|+.++|++|+.|+.+||++++..+
T Consensus 190 ~CV~ACPtGAI~k~eedGiV~ID~dkCiGCg~CV~ACPygAI~~n 234 (492)
T TIGR01660 190 ACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYFN 234 (492)
T ss_pred cchhhCccCCeEEecCCCeEEEehhhccChHHHHHhCCCCCcEec
Confidence 34455888888743 578889999999999999999999987643
No 26
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=94.02 E-value=0.018 Score=59.23 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=28.0
Q ss_pred CCCceeeccCCcccCCcccccccccccccccH
Q 017974 48 QAEPVKISLKDCLACSGCITSAETVMLEKQSL 79 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~~~ 79 (363)
.+++..|+++.|++||-|+.-||+.||+--++
T Consensus 41 ~~gkpvIsE~lCiGCGICvkkCPF~AI~IvnL 72 (591)
T COG1245 41 DTGKPVISEELCIGCGICVKKCPFDAISIVNL 72 (591)
T ss_pred CCCCceeEhhhhccchhhhccCCcceEEEecC
Confidence 46788999999999999999999999875553
No 27
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=93.99 E-value=0.026 Score=46.43 Aligned_cols=28 Identities=25% Similarity=0.547 Sum_probs=25.1
Q ss_pred CCCceeeccCCcccCCcccccccccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.+..+.|+.+.|++||.|+.+||++++.
T Consensus 7 ~~~~v~id~~~Ci~C~~Cv~aCP~~ai~ 34 (103)
T PRK09626 7 DNTPVWVDESRCKACDICVSVCPAGVLA 34 (103)
T ss_pred CCCCeEECcccccCCcchhhhcChhhhc
Confidence 4688999999999999999999998764
No 28
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=93.97 E-value=0.02 Score=43.85 Aligned_cols=22 Identities=18% Similarity=0.579 Sum_probs=19.1
Q ss_pred eeeccCCcccCCcccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~ 73 (363)
..-...+|++||.|+++||+++
T Consensus 45 ~~~~~~~CVgCgrCv~~CP~~I 66 (69)
T PF13746_consen 45 DRYGEGDCVGCGRCVRVCPAGI 66 (69)
T ss_pred hhcCCccCCCcChHhhhcCCCC
Confidence 3448899999999999999984
No 29
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=93.82 E-value=0.023 Score=61.25 Aligned_cols=31 Identities=26% Similarity=0.534 Sum_probs=25.7
Q ss_pred CCCceeeccCCcccCCccccccccccccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~~ 78 (363)
-+.-.-|+++.|++||.|+++||.+++-..+
T Consensus 183 wd~~~~i~~SSCVsCG~CvtVCP~nALmek~ 213 (978)
T COG3383 183 WDNDVPINESSCVSCGACVTVCPVNALMEKS 213 (978)
T ss_pred cCCCCccccccccccCccceecchhhhhhhh
Confidence 4567789999999999999999999764433
No 30
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=93.74 E-value=0.022 Score=40.68 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=17.3
Q ss_pred CceeeccCCcccCCcccccccccc
Q 017974 50 EPVKISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg~Cit~c~~~~ 73 (363)
....++.++|+.||.|+.+||++|
T Consensus 29 ~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 29 PKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp TTSEETGGG----SHHHHHTTTS-
T ss_pred eEEEEechhCcCcChhhhhCcCcC
Confidence 677899999999999999999874
No 31
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=93.56 E-value=0.032 Score=50.42 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=25.2
Q ss_pred CCCceeeccCCcccCCccccccccccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
+...-.|+..+||-||-|+.+||+.||..
T Consensus 86 ~~~~~~In~grCIfCg~C~e~CPt~Al~~ 114 (172)
T COG1143 86 KPKRPDINLGRCIFCGLCVEVCPTGALVL 114 (172)
T ss_pred ccccceeccccccccCchhhhCchhhhcC
Confidence 44577899999999999999999998754
No 32
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=93.43 E-value=0.026 Score=51.78 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=24.6
Q ss_pred CCCccccccCCCceeeccCCcccCCcccccccccccccc
Q 017974 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 39 ~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
++..++....++...++.++|+.||.|+.+||+++|...
T Consensus 126 Cp~~ai~~~~~~~~~v~~~~C~~Cg~Cv~vCP~~AI~~~ 164 (191)
T PRK05113 126 CPVDAIVGATKAMHTVISDLCTGCDLCVAPCPTDCIEMI 164 (191)
T ss_pred CCHhhhecccCCceeecCCcCCchHHHHHHcCcCceEEe
Confidence 444444433445556777777777777777777766543
No 33
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=93.38 E-value=0.033 Score=44.23 Aligned_cols=26 Identities=23% Similarity=0.556 Sum_probs=22.3
Q ss_pred ceeeccCCcccCCccccccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
...+..+.|+.||.|+.+||+.+|..
T Consensus 23 ~~~~~~~~Ci~Cg~C~~~CP~~ai~~ 48 (99)
T COG1145 23 KLVIDAEKCIGCGLCVKVCPTGAIEL 48 (99)
T ss_pred eEEeCccccCCCCCchhhCCHHHhhc
Confidence 34788888999999999999998764
No 34
>PRK08764 ferredoxin; Provisional
Probab=93.32 E-value=0.047 Score=47.23 Aligned_cols=20 Identities=25% Similarity=0.717 Sum_probs=9.8
Q ss_pred ccCCcccCCccccccccccc
Q 017974 55 SLKDCLACSGCITSAETVML 74 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~i 74 (363)
..+.|+.||.|+++||..+|
T Consensus 83 ~~~~Ci~C~~Cv~aCp~~ai 102 (135)
T PRK08764 83 VEADCIGCTKCIQACPVDAI 102 (135)
T ss_pred CcccCcCcchHHHhCChhhc
Confidence 33455555555555554443
No 35
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=93.31 E-value=0.031 Score=44.45 Aligned_cols=24 Identities=13% Similarity=0.422 Sum_probs=21.6
Q ss_pred eeccCCcccCCccccccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.++.++|+.||.|+.+||+.+|+.
T Consensus 66 ~i~~~~C~~Cg~C~~~CP~~AI~~ 89 (91)
T TIGR02936 66 VANPGNCIGCGACARVCPKKCQTH 89 (91)
T ss_pred ecCCccCcChhhhhhhCCHhHEec
Confidence 578999999999999999998753
No 36
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=93.26 E-value=0.035 Score=46.80 Aligned_cols=29 Identities=14% Similarity=0.387 Sum_probs=25.0
Q ss_pred CCCceeeccCCcccCCccccccccccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
-.+.+.++.++|++||.|+.+||.+++..
T Consensus 33 ~~g~i~i~~~~Ci~C~~C~~~CP~~ai~~ 61 (120)
T PRK08348 33 FRGKILYDVDKCVGCRMCVTVCPAGVFVY 61 (120)
T ss_pred ccceEEECcccCcCcccHHHHCCccceEc
Confidence 44788999999999999999999987643
No 37
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=93.20 E-value=0.043 Score=54.75 Aligned_cols=38 Identities=11% Similarity=0.388 Sum_probs=30.8
Q ss_pred CCCCcccccc---CCCceeeccCCcccCCcccccccccccc
Q 017974 38 KPQVSTSSKQ---QAEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 38 ~~~~~~~~~~---~~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.|++.++... .++++.|+.+.|+.||.|+.+||+.++.
T Consensus 192 ~CP~~Ai~~~~~~~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~ 232 (341)
T TIGR02066 192 ACPTGALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPAMPIF 232 (341)
T ss_pred eCchhhceecccCCCCceeeccccCCcCCchHHhCchhhcc
Confidence 4666666542 3578999999999999999999998764
No 38
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=93.12 E-value=0.031 Score=50.52 Aligned_cols=31 Identities=10% Similarity=0.296 Sum_probs=26.3
Q ss_pred CCCceeeccCCcccCCccccccccccccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~~ 78 (363)
--|...++-++||+|+.|.++||+.+|+-..
T Consensus 46 fRG~~~l~~~~CIgC~lCa~iCP~~aI~m~~ 76 (172)
T COG1143 46 FRGRHVLDRDKCIGCGLCANICPANAITMET 76 (172)
T ss_pred ccceeeccccCCcchhHHHhhCCcCceEEEE
Confidence 4577888888899999999999999887544
No 39
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=93.02 E-value=0.039 Score=52.54 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=33.9
Q ss_pred CCCCCCCCccccccCCCceeeccCCcccCCccccccccccccc
Q 017974 34 KNPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 34 ~~~~~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.+...++..++.+..++.+.++.++|++|+.|+.+||++++..
T Consensus 107 ~Cv~~CP~~Ai~~~~~G~v~id~~~CigC~~Cv~aCP~~Ai~~ 149 (244)
T PRK14993 107 PCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFI 149 (244)
T ss_pred cCccccCCCCEEECCCCCEEEcHHHCCCHHHHHHhcCCCCCEE
Confidence 3445577777766667888999999999999999999987653
No 40
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=93.01 E-value=0.039 Score=39.25 Aligned_cols=24 Identities=21% Similarity=0.679 Sum_probs=17.2
Q ss_pred cCCCceeeccCCcccCCccccccc
Q 017974 47 QQAEPVKISLKDCLACSGCITSAE 70 (363)
Q Consensus 47 ~~~~ka~I~~~dCi~Cg~Cit~c~ 70 (363)
...+...++..+|+.||.|+.+||
T Consensus 29 ~~~~~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 29 DGEKKVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp E-SSSEEE-TTT--TTSHHHHH-T
T ss_pred ccCCCeEeCcccccccChhhhhCc
Confidence 467788999999999999999998
No 41
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=92.91 E-value=0.05 Score=52.98 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=34.2
Q ss_pred CCCCCCCC-ccccccCCCceeeccCCcccCCccccccccccccc
Q 017974 34 KNPDKPQV-STSSKQQAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 34 ~~~~~~~~-~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.+...|+. .++....++.+.++.+.|++|+.|+.+||++++..
T Consensus 100 ~Cv~aCP~~gA~~~~~~G~V~id~dkCigC~~Cv~aCP~~a~~~ 143 (283)
T TIGR01582 100 GCLKACPAPGAIIQYQNGIVDFDHSKCIGCGYCIVGCPFNIPRY 143 (283)
T ss_pred cccCCCCcCCeEEEcCCCcEEEeHHHCCcchHHHhhCCCCCcEE
Confidence 34555776 56655678899999999999999999999997654
No 42
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=92.90 E-value=0.045 Score=48.90 Aligned_cols=27 Identities=19% Similarity=0.489 Sum_probs=16.8
Q ss_pred CCceeeccCCcccCCcccccccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
...+.++.+.|+.||.|+++||++++.
T Consensus 105 ~~~~~id~~~Ci~Cg~C~~aCp~~ai~ 131 (165)
T TIGR01944 105 PMVALIDEDNCIGCTKCIQACPVDAIV 131 (165)
T ss_pred CceEEEECCcCCChhHHHHhCCccceE
Confidence 334566666677777777666666543
No 43
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=92.87 E-value=0.068 Score=41.25 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=18.4
Q ss_pred CCCccccccCCCceeeccCCcccCCccccccccccc
Q 017974 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 39 ~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i 74 (363)
++..++....++...+....|..|+.|+.+||+.++
T Consensus 37 Cp~~ai~~~~~~~~~i~~~~C~~C~~C~~~CP~~Ai 72 (78)
T TIGR02179 37 CPEGAIQEDEGGFVGIDYDYCKGCGICANVCPVKAI 72 (78)
T ss_pred cCccceEecCCCcEEecCccCcCccchhhhCCcccc
Confidence 333343332333445555566666666666666554
No 44
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=92.85 E-value=0.043 Score=45.42 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=15.7
Q ss_pred CCceeeccCCcccCCcccccccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
++.+.|+.++|..||.|+.+||+.+|.
T Consensus 73 ~~~~~id~~~C~~Cg~Cv~~CP~~AI~ 99 (105)
T PRK09623 73 DGYVAIDYDYCKGCGICANECPTKAIT 99 (105)
T ss_pred CCcEEeCchhCcCcchhhhhcCcCcEE
Confidence 344556666666666666666665543
No 45
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=92.74 E-value=0.036 Score=44.02 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=23.9
Q ss_pred CCceeeccCCcccCCccccccccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.-.+.|+.+.|++||.|+.+||..++..
T Consensus 13 ~~~~~i~~~~Ci~C~~Cv~~CP~~~i~~ 40 (91)
T TIGR02936 13 QFVTSIDQEKCIGCGRCYKVCGRDVLTL 40 (91)
T ss_pred ceeEEECHhHCCCcchHHHHcChhhcee
Confidence 3457899999999999999999987654
No 46
>PRK06991 ferredoxin; Provisional
Probab=92.63 E-value=0.041 Score=53.18 Aligned_cols=25 Identities=16% Similarity=0.448 Sum_probs=15.8
Q ss_pred CceeeccCCcccCCccccccccccc
Q 017974 50 EPVKISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg~Cit~c~~~~i 74 (363)
..+.|+.+.|+.||.|+.+||+++|
T Consensus 78 ~~~~id~~~CigCg~Cv~aCP~~AI 102 (270)
T PRK06991 78 AVAVIDEQLCIGCTLCMQACPVDAI 102 (270)
T ss_pred ceeEEccccCCCCcHHHHhCCHhhe
Confidence 3445666666666666666666655
No 47
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=92.50 E-value=0.03 Score=48.49 Aligned_cols=46 Identities=9% Similarity=0.127 Sum_probs=32.2
Q ss_pred CCCCCCCCccccccCCC-ce-eeccCCcccCCcccccccccccccccH
Q 017974 34 KNPDKPQVSTSSKQQAE-PV-KISLKDCLACSGCITSAETVMLEKQSL 79 (363)
Q Consensus 34 ~~~~~~~~~~~~~~~~~-ka-~I~~~dCi~Cg~Cit~c~~~~i~~~~~ 79 (363)
.+...++..++.....+ ++ .|+.+.|+.||.|+.+||+++|.....
T Consensus 20 ~Cv~~CP~~ai~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~ 67 (132)
T TIGR02060 20 ACVYICPNDLMHLDTEIMKAYNIEPDMCWECYSCVKACPQGAIDVRGY 67 (132)
T ss_pred cCHhhcCccceEecCCCceeeecCchhCccHHHHHHhCCcCceEEECc
Confidence 34445666666533322 33 588999999999999999998875543
No 48
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=92.40 E-value=0.065 Score=45.16 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=30.1
Q ss_pred CCCCcccccc-CCCceeeccCCcccCCccccccccccccccc
Q 017974 38 KPQVSTSSKQ-QAEPVKISLKDCLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 38 ~~~~~~~~~~-~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~~ 78 (363)
.|+..++... ..+...++...|+.||.|+.+||+++|....
T Consensus 53 ~CP~~ai~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~ 94 (120)
T PRK08348 53 VCPAGVFVYLPEIRKVALWTGRCVFCGQCVDVCPTGALQMSD 94 (120)
T ss_pred HCCccceEccccccceEecCCcCcChhhhHHhCCcCcEEecc
Confidence 3555555432 2345788899999999999999999876443
No 49
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=92.29 E-value=0.04 Score=54.04 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=30.8
Q ss_pred CCCCCCccccccCCCceeeccCCcccCCcccccccccc
Q 017974 36 PDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 36 ~~~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~ 73 (363)
...|+..+++- ...++.|+.+.|+.||.|+++||..+
T Consensus 181 v~~C~~gAI~~-~~~~l~id~~~Ci~Cg~Ci~~Cp~~~ 217 (317)
T COG2221 181 VKVCPTGAITW-DGKKLKIDGSKCIGCGKCIRACPKAA 217 (317)
T ss_pred HHhCCCCceee-ccceEEEehhhccCccHHhhhCChhh
Confidence 34588888884 44899999999999999999999433
No 50
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=92.24 E-value=0.091 Score=47.75 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=21.1
Q ss_pred eeeccCCcccCCcccccccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
..+...+|+.||.|+.+||+++|...
T Consensus 68 ~~~~~~~C~~Cg~C~~~CPt~AI~~~ 93 (181)
T PRK08222 68 WQLYLGRCIYCGRCEEVCPTRAIQLT 93 (181)
T ss_pred eeeccCcCcCCCCcccccCcCeEEec
Confidence 46777899999999999999887643
No 51
>COG1146 Ferredoxin [Energy production and conversion]
Probab=92.23 E-value=0.063 Score=40.64 Aligned_cols=29 Identities=17% Similarity=0.471 Sum_probs=24.8
Q ss_pred CCceeeccCCcccCCcccccccccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
...+-+..++|++||.|+..||.++|...
T Consensus 33 ~~~~~~~~e~C~~C~~C~~~CP~~aI~~~ 61 (68)
T COG1146 33 GKPVVARPEECIDCGLCELACPVGAIKVD 61 (68)
T ss_pred cceeEeccccCccchhhhhhCCcceEEEe
Confidence 55688899999999999999999987643
No 52
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=92.10 E-value=0.056 Score=58.54 Aligned_cols=81 Identities=6% Similarity=-0.003 Sum_probs=40.7
Q ss_pred CCcccccccccccccccHHHHHHhhcCC-CeEEEEeCcchhhHHhhHhCCChHHHHHHHHHHHH-HcCCeEEEechhHHH
Q 017974 62 CSGCITSAETVMLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLK-SLGVKSIFDTSCSRD 139 (363)
Q Consensus 62 Cg~Cit~c~~~~i~~~~~~~~~~~L~~~-k~~V~sisP~~~~sl~~~f~~~~~~~~~~l~~~Lk-~LGf~~V~Dta~~ad 139 (363)
||+||..||+++++.....-.-+.+... .+.|...+|.-+.-....++........++...+. .+++ ...-||.|
T Consensus 189 cGncv~vCPvGALt~K~~~~~ar~wEl~k~~si~~~~a~g~~i~~d~r~~ev~ri~~r~n~~vNe~~~~---d~~RF~~d 265 (693)
T COG1034 189 CGNCVDVCPVGALTSKPFAFTARKWELKKTPSICVHCAVGCNIRVDERYGEVRRILPRYNEVVNEEWLC---DKGRFAYD 265 (693)
T ss_pred ccceeeeccccccccChHHhhhccchhccCceeeccCccccceeecccccchhhhcccchhHHHHHHhc---cccccccc
Confidence 3444445899988877763333344333 34444555533333333333332222234444444 3444 56667777
Q ss_pred HHHHHH
Q 017974 140 LTLIEA 145 (363)
Q Consensus 140 i~~~e~ 145 (363)
.+..+.
T Consensus 266 ~~~~~~ 271 (693)
T COG1034 266 GLNLQR 271 (693)
T ss_pred ccccch
Confidence 776664
No 53
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=91.87 E-value=0.063 Score=50.39 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=31.9
Q ss_pred CCCCCCCCcccccc-CCCceeeccCCcccCCcccccccccccc
Q 017974 34 KNPDKPQVSTSSKQ-QAEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 34 ~~~~~~~~~~~~~~-~~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
++...+|..++... ..+.+.|+.+.|++||.|+.+||++++.
T Consensus 101 ~Cv~~CP~gAi~~~~~~g~v~id~~~C~~C~~C~~aCP~~A~~ 143 (225)
T TIGR03149 101 PCVAVCPTGASFKDEETGIVDVHKDLCVGCQYCIAACPYRVRF 143 (225)
T ss_pred ChHhhCCCCcEEEeCCCCeEEechhhCCcchHHHHhCCCCCcE
Confidence 34455777777654 3567888899999999999999998753
No 54
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=91.76 E-value=0.11 Score=42.52 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=28.4
Q ss_pred CCCCccccccCCC--ceeeccCCcccCCcccccccccccccc
Q 017974 38 KPQVSTSSKQQAE--PVKISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 38 ~~~~~~~~~~~~~--ka~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
.++..++.....+ ...++..+|+.||.|+.+||+++|...
T Consensus 45 ~CP~~~i~~~~~g~~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~ 86 (101)
T TIGR00402 45 ACENNILQLGQQGQPTVEFDNAECDFCGKCAEACPTNAFHPR 86 (101)
T ss_pred HcCcccceeccCCceeeEecCccCcCccChhhHCCccccCcC
Confidence 3555555533333 357888899999999999999987543
No 55
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=91.76 E-value=0.071 Score=48.56 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=16.1
Q ss_pred ceeeccCCcccCCcccccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
...|+...|+.||.|+.+||+++|.
T Consensus 96 ~~~id~~~Ci~Cg~Cv~aCP~~AI~ 120 (183)
T TIGR00403 96 NYSIDFGVCIFCGNCVEYCPTNCLS 120 (183)
T ss_pred eeecCcccccCcCchhhhcCCCCee
Confidence 4456666677777777777766554
No 56
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=91.48 E-value=0.1 Score=47.12 Aligned_cols=21 Identities=24% Similarity=0.632 Sum_probs=10.3
Q ss_pred eccCCcccCCccccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~i 74 (363)
++..+|+.||.|+.+||+++|
T Consensus 70 i~~~~C~~Cg~C~~vCP~~AI 90 (180)
T PRK12387 70 FNLGRCIFCGRCEEVCPTAAI 90 (180)
T ss_pred eccccCcCccchhhhcCcCce
Confidence 444455555555555554444
No 57
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=91.48 E-value=0.05 Score=38.97 Aligned_cols=20 Identities=20% Similarity=0.735 Sum_probs=14.6
Q ss_pred CcccCCcccccccccccccc
Q 017974 58 DCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 58 dCi~Cg~Cit~c~~~~i~~~ 77 (363)
+||+||.|+.+||.+++...
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~ 20 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFD 20 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEE
T ss_pred CCCCcchHHHHCCccCeEcc
Confidence 69999999999999976543
No 58
>CHL00065 psaC photosystem I subunit VII
Probab=91.44 E-value=0.064 Score=41.96 Aligned_cols=26 Identities=23% Similarity=0.545 Sum_probs=19.8
Q ss_pred ceeeccCCcccCCccccccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.+.++.+.|++||.|+.+||..++..
T Consensus 3 ~~~~~~~~Ci~Cg~C~~~CP~~~i~~ 28 (81)
T CHL00065 3 HSVKIYDTCIGCTQCVRACPTDVLEM 28 (81)
T ss_pred CccCccccCCChhHHHHHCCccchhh
Confidence 45567788999999999998776543
No 59
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=91.41 E-value=0.1 Score=49.94 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=20.5
Q ss_pred CCceeeccCCcccCCcccccccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.+...++..+|+.||.|+.+||+++++
T Consensus 226 ~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~ 252 (255)
T TIGR02163 226 GGSTLVLSGDCTLCGRCIDVCHEDVLG 252 (255)
T ss_pred CCceEeccccccchhHHHHhCCccccc
Confidence 345677778888888888888887754
No 60
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=91.14 E-value=0.1 Score=51.32 Aligned_cols=29 Identities=17% Similarity=0.418 Sum_probs=24.4
Q ss_pred CCCceeeccCCcccCCccccccccccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.++++.++.+.|+.||.|+.+||+.++..
T Consensus 192 ~~~~~~id~~~C~~Cg~Cv~~CP~~Al~~ 220 (314)
T TIGR02912 192 ENYKVVRDHSKCIGCGECVLKCPTGAWTR 220 (314)
T ss_pred cCCeEEeCCCcCcCcchhhhhCCHhhccc
Confidence 35678899999999999999999987653
No 61
>PLN00071 photosystem I subunit VII; Provisional
Probab=91.05 E-value=0.085 Score=41.15 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=19.0
Q ss_pred eeeccCCcccCCccccccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
..+..++|++||.|+.+||+.+++.
T Consensus 4 ~~~~~~~C~~C~~C~~~CP~~~i~~ 28 (81)
T PLN00071 4 PVKIYDTCIGCTQCVRACPTDVLEM 28 (81)
T ss_pred CeEcCCcCcChhHHHHHCCccceee
Confidence 4567778888888888888776543
No 62
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=91.03 E-value=0.073 Score=48.36 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=25.1
Q ss_pred CCceeeccCCcccCCccccccccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
-|+..++.+.|++||.|+.+||+++|..
T Consensus 30 rG~~~~d~~~Ci~Cg~Cv~aCP~~Ai~~ 57 (181)
T PRK08222 30 RGKPDLMPSQCIACGACTCACPANALTI 57 (181)
T ss_pred cCceEeChhhCcchhHHHHhCCccceEc
Confidence 4788999999999999999999998753
No 63
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=90.94 E-value=0.12 Score=49.90 Aligned_cols=25 Identities=20% Similarity=0.624 Sum_probs=20.9
Q ss_pred eeccCCcccCCcccccccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
.++..+|+.||.|+.+||+++++-.
T Consensus 238 ~i~~~~C~~Cg~Cv~~CP~~Ai~~~ 262 (271)
T PRK09477 238 QVTSGDCITCGRCIDVCSEDVFNFT 262 (271)
T ss_pred eeCcccCcChhHHHhhcCccceeec
Confidence 4788899999999999999887643
No 64
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=90.83 E-value=0.11 Score=47.30 Aligned_cols=26 Identities=15% Similarity=0.537 Sum_probs=23.3
Q ss_pred CCceeeccCCcccCCccccccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~~~i 74 (363)
.+.+.+..++|++||.|+.+||..++
T Consensus 54 rG~i~~~~~kCi~Cg~C~~aCP~~ai 79 (183)
T TIGR00403 54 RGRIHFEFDKCIACEVCVRVCPINLP 79 (183)
T ss_pred cceEEeCcccCcCcCChhhhCCCCcc
Confidence 46788999999999999999999864
No 65
>PRK06273 ferredoxin; Provisional
Probab=90.59 E-value=0.13 Score=46.09 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.6
Q ss_pred CceeeccCCcccCCcccccccccccc
Q 017974 50 EPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
....|+..+|+.||.|+.+||+.+|.
T Consensus 84 ~~~~Id~~kCi~Cg~C~~aCP~~AI~ 109 (165)
T PRK06273 84 KIPKIDYEKCVYCLYCHDFCPVFALF 109 (165)
T ss_pred cceecccccCcCCCCcchhCCHhhee
Confidence 34678899999999999999999863
No 66
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=90.56 E-value=0.11 Score=39.99 Aligned_cols=24 Identities=25% Similarity=0.643 Sum_probs=20.9
Q ss_pred ceeeccCCcccCCccccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~i 74 (363)
++.|+.+.||+||.|..+||...-
T Consensus 2 ~v~vDrd~Cigcg~C~~~aPdvF~ 25 (68)
T COG1141 2 RVIVDRDTCIGCGACLAVAPDVFD 25 (68)
T ss_pred EEEechhhccccchhhhcCCccee
Confidence 467888999999999999998853
No 67
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=90.44 E-value=0.1 Score=39.17 Aligned_cols=22 Identities=27% Similarity=0.652 Sum_probs=19.7
Q ss_pred eeeccCCcccCCcccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~ 73 (363)
+.|+.++|++||.|+..||...
T Consensus 1 V~vD~~~C~gcg~C~~~aP~vF 22 (65)
T PF13459_consen 1 VWVDRDRCIGCGLCVELAPEVF 22 (65)
T ss_pred CEEecccCcCccHHHhhCCccE
Confidence 4688999999999999999874
No 68
>PRK10194 ferredoxin-type protein; Provisional
Probab=90.30 E-value=0.11 Score=46.06 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=27.2
Q ss_pred CCCCCccccccC--CC--ceeeccCCcccCCccccccccccccc
Q 017974 37 DKPQVSTSSKQQ--AE--PVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 37 ~~~~~~~~~~~~--~~--ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
+.++.+++.... .+ ...|+.+.|++||.|+.+||+++|+-
T Consensus 114 ~~CP~~Ai~~~~~~~~~~~~~i~~~~C~gCg~C~~~CP~~AI~~ 157 (163)
T PRK10194 114 DSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITA 157 (163)
T ss_pred hhCCHhHeEeeecCCCcccceeCcccCcCcchhhhhCCccceEe
Confidence 345666665321 12 35778889999999999999887653
No 69
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=90.07 E-value=0.12 Score=48.81 Aligned_cols=36 Identities=11% Similarity=0.276 Sum_probs=25.2
Q ss_pred ccCCcccCCcccccccccccccccHHHHHHhhcCCCe
Q 017974 55 SLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA 91 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~i~~~~~~~~~~~L~~~k~ 91 (363)
....|..||.|+.+||++||...+. .+.+.+....+
T Consensus 188 ~~~~C~~Cg~Cv~vCP~gAL~~~~~-~~~~~~~~~~~ 223 (234)
T PRK07569 188 TSETCTSCGKCVQACPTGAIFRKGS-TVGEMEKDRDK 223 (234)
T ss_pred ccccccchHHHHHhCCCCcEEecCC-cHHHhhcCccc
Confidence 3468999999999999999876553 23344443333
No 70
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=90.06 E-value=0.14 Score=45.31 Aligned_cols=40 Identities=13% Similarity=0.241 Sum_probs=32.1
Q ss_pred CCCCCcccccc-CCCceeeccCCcccCCccccccccccccc
Q 017974 37 DKPQVSTSSKQ-QAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 37 ~~~~~~~~~~~-~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
..++..++.+. .++.+.++.++|+.||.|+.+||+.++..
T Consensus 74 ~~CP~~ai~~~~~~~~~~i~~~~C~~C~~C~~aCP~~ai~~ 114 (161)
T TIGR02951 74 KNCPTGAMYKREEDGLVLVDQDKCIGCRYCVWACPYGAPQY 114 (161)
T ss_pred HhCCCCCEEeecCCCcEEECHHhCCCchHHHhhCCCCCcEE
Confidence 34677777644 56788999999999999999999987654
No 71
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=90.02 E-value=0.12 Score=39.86 Aligned_cols=26 Identities=12% Similarity=0.425 Sum_probs=22.6
Q ss_pred ceeeccCCcccCCccccccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
+..|..++|++|+.|+.+||.+++..
T Consensus 19 ~~~i~~~~C~~C~~C~~~Cp~~ai~~ 44 (78)
T TIGR02179 19 KPVVDKEKCIKCKNCWLYCPEGAIQE 44 (78)
T ss_pred EEEEcCCcCcChhHHHhhcCccceEe
Confidence 56888999999999999999887654
No 72
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=90.00 E-value=0.14 Score=40.56 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=31.6
Q ss_pred CCCCCccccccC----CCceeeccCCcccCCccccccccccccc
Q 017974 37 DKPQVSTSSKQQ----AEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 37 ~~~~~~~~~~~~----~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
..++..++.... .....++.+.|+.||.|+.+||..+++.
T Consensus 39 ~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~ 82 (99)
T COG1145 39 KVCPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVDALSI 82 (99)
T ss_pred hhCCHHHhhcccccCccceEEEccccCccccchHhhCCcCCeeh
Confidence 456777666432 4789999999999999999999998553
No 73
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=89.91 E-value=0.11 Score=51.57 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=28.1
Q ss_pred CCCCccccccC-CCceeeccCCcccCCcccccccccccc
Q 017974 38 KPQVSTSSKQQ-AEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 38 ~~~~~~~~~~~-~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.|+..++.+.. ++.+.++.+.|+.|+.|+.+||.+++.
T Consensus 123 aCP~gAi~k~~~~g~V~id~dkCigCg~Cv~aCP~gai~ 161 (328)
T PRK10882 123 VCPVSALTKDPKTGIVHYDKDVCTGCRYCMVACPFNVPK 161 (328)
T ss_pred hCCCCCEEecccCCcccCCHHHcCcccHHHHhCCcccee
Confidence 46667776554 477788888888888888888887654
No 74
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=89.75 E-value=0.08 Score=37.74 Aligned_cols=21 Identities=19% Similarity=0.699 Sum_probs=13.9
Q ss_pred CcccCCccccccccccccccc
Q 017974 58 DCLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 58 dCi~Cg~Cit~c~~~~i~~~~ 78 (363)
+|++||.|+.+||+++|....
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~ 21 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDE 21 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEE
T ss_pred CCCCcCchHHhcCccccCccc
Confidence 599999999999999876443
No 75
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=89.61 E-value=0.12 Score=54.52 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=28.2
Q ss_pred CCCCccccccC-CCceeeccCCcccCCccccccccccccc
Q 017974 38 KPQVSTSSKQQ-AEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 38 ~~~~~~~~~~~-~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.|+..++.... +..+.|+.++|+.||.|+.+||+++|+.
T Consensus 521 ~Cp~~ai~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~Ai~~ 560 (564)
T PRK12771 521 ACPQDAIIKLGPGRRYHFDYDKCTGCHICADVCPCGAIEM 560 (564)
T ss_pred hCChhheeeecCCceEEEecccCcChhHHHhhcCcCceEe
Confidence 35555555332 3347889999999999999999988753
No 76
>CHL00065 psaC photosystem I subunit VII
Probab=89.55 E-value=0.13 Score=40.28 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=20.5
Q ss_pred eeccCCcccCCccccccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.+..+.|+.||.|+.+||+.+|+-
T Consensus 42 ~~~~~~C~~C~~C~~~CP~~Ai~~ 65 (81)
T CHL00065 42 APRTEDCVGCKRCESACPTDFLSV 65 (81)
T ss_pred cCCCCcCCChhhhhhhcCccccEE
Confidence 456689999999999999998753
No 77
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=89.29 E-value=0.11 Score=46.46 Aligned_cols=28 Identities=14% Similarity=0.419 Sum_probs=24.3
Q ss_pred CCCceeeccCCcccCCcccccccccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
+...-.|+-..||.||-|...||+.+|.
T Consensus 141 RttrYdIDmtkCIyCG~CqEaCPvdaiv 168 (212)
T KOG3256|consen 141 RTTRYDIDMTKCIYCGFCQEACPVDAIV 168 (212)
T ss_pred cceeecccceeeeeecchhhhCCcccee
Confidence 5567789999999999999999998764
No 78
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=89.27 E-value=0.17 Score=45.29 Aligned_cols=26 Identities=15% Similarity=0.528 Sum_probs=22.7
Q ss_pred CCceeeccCCcccCCccccccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~~~i 74 (363)
.+.+.+..++|++||.|+.+||..++
T Consensus 51 rg~i~~~~~~Ci~Cg~C~~aCP~~~~ 76 (167)
T CHL00014 51 RGRIHFEFDKCIACEVCVRVCPIDLP 76 (167)
T ss_pred CCeEEeccccCCCcCcHHHhCCCCCc
Confidence 46778889999999999999998854
No 79
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=89.24 E-value=0.18 Score=48.64 Aligned_cols=28 Identities=14% Similarity=0.433 Sum_probs=25.2
Q ss_pred CCCceeeccCCcccCCcccccccccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
..+.+.++.+.|++||.|+.+||.+++.
T Consensus 39 ~~~~~~~~~~~C~~C~~C~~~Cp~~a~~ 66 (295)
T TIGR02494 39 KSPELLFKENRCLGCGKCVEVCPAGTAR 66 (295)
T ss_pred CCceEEEccccCCCCchhhhhCcccccc
Confidence 5678899999999999999999999764
No 80
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=89.16 E-value=0.18 Score=44.81 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=21.9
Q ss_pred CCceeeccC-----CcccCCccccccccccccc
Q 017974 49 AEPVKISLK-----DCLACSGCITSAETVMLEK 76 (363)
Q Consensus 49 ~~ka~I~~~-----dCi~Cg~Cit~c~~~~i~~ 76 (363)
.+...++.+ .|++||.|+.+||.+++..
T Consensus 45 ~g~~~l~~~~~~~~~Ci~C~~C~~~CP~~ai~~ 77 (164)
T PRK05888 45 RGRHALRRDPNGEERCIACKLCAAICPADAITI 77 (164)
T ss_pred CCEEeecCCCCCCccCCcccChHHHcCcccccc
Confidence 345556666 9999999999999987653
No 81
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=88.98 E-value=0.13 Score=44.34 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=23.6
Q ss_pred CCceeeccCCcccCCcccccccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
..+..++.+.|++||.|+.+||..++.
T Consensus 51 ~~~p~~d~~~Ci~C~~C~~~CP~~ai~ 77 (133)
T PRK09625 51 VEKPVHNNEICINCFNCWVYCPDAAIL 77 (133)
T ss_pred eeeEEEehhHCcChhhHHHhCCHhheE
Confidence 367789999999999999999988764
No 82
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=88.98 E-value=0.13 Score=38.03 Aligned_cols=20 Identities=25% Similarity=0.738 Sum_probs=13.3
Q ss_pred eccCCcccCCcccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~ 73 (363)
|+.+.|++||.|+..||...
T Consensus 1 VD~~~Ci~Cg~C~~~aP~vF 20 (58)
T PF13370_consen 1 VDRDKCIGCGLCVEIAPDVF 20 (58)
T ss_dssp E-TTT--S-SHHHHH-TTTE
T ss_pred CChhhCcCCChHHHhCcHhe
Confidence 56789999999999999885
No 83
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=88.92 E-value=0.14 Score=45.89 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=22.8
Q ss_pred ceeeccCCcccCCcccccccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
...++..+|+.||.|+.+||+++|...
T Consensus 93 ~~~id~~~C~~Cg~C~~~CP~~AI~~~ 119 (167)
T CHL00014 93 NYSIDFGVCIFCGNCVEYCPTNCLSMT 119 (167)
T ss_pred cccCCCCcCcCccchHhhcCcCceecC
Confidence 566788999999999999999987543
No 84
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=88.87 E-value=0.21 Score=40.37 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=24.1
Q ss_pred CCCccccccCCCcee-eccCCcccCCcccccccccccc
Q 017974 39 PQVSTSSKQQAEPVK-ISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 39 ~~~~~~~~~~~~ka~-I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
+|...|...+++... |+-+.|-+||-|..+||+.+|+
T Consensus 47 CPe~~i~~~~~~~~~~idYdyCKGCGICa~vCP~kaI~ 84 (91)
T COG1144 47 CPEPAILEEEGGYKVRIDYDYCKGCGICANVCPVKAIE 84 (91)
T ss_pred CCchheeeccCCccceeEcccccCceechhhCChhheE
Confidence 444555544444333 7888888888888888877664
No 85
>PRK02651 photosystem I subunit VII; Provisional
Probab=88.86 E-value=0.17 Score=39.40 Aligned_cols=24 Identities=21% Similarity=0.567 Sum_probs=18.3
Q ss_pred eeccCCcccCCccccccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
....++|+.||.|+.+||..++..
T Consensus 5 ~~~~~~Ci~C~~C~~~CP~~~i~~ 28 (81)
T PRK02651 5 VKIYDTCIGCTQCVRACPLDVLEM 28 (81)
T ss_pred ccccccCCCcchHHHHCCccceec
Confidence 344688999999999999776543
No 86
>PRK09898 hypothetical protein; Provisional
Probab=88.86 E-value=0.26 Score=45.56 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=32.0
Q ss_pred CCCCCCCCcccccc-CCCceeeccCCcccCCccccccccccccc
Q 017974 34 KNPDKPQVSTSSKQ-QAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 34 ~~~~~~~~~~~~~~-~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.+...++..++... +.+.+.++.++|++|+.|+.+||++++..
T Consensus 130 ~C~~~CP~gAi~~~~~~g~v~vd~~~CigC~~C~~aCP~~ai~~ 173 (208)
T PRK09898 130 QCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATV 173 (208)
T ss_pred chhhhCCcceEEeeccCCeEEeccccCCCcCcccccCCCCCCEe
Confidence 34445666665533 34678899999999999999999987653
No 87
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=88.83 E-value=0.17 Score=39.39 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=20.1
Q ss_pred eeeccCCcccCCccccccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
+....+.|++||.|+.+||.+++..
T Consensus 3 ~~~~~~~Ci~C~~Cv~~CP~~~i~~ 27 (80)
T TIGR03048 3 SVKIYDTCIGCTQCVRACPTDVLEM 27 (80)
T ss_pred ceecCCcCcCcchHHHHCCccceee
Confidence 4567789999999999999876543
No 88
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=88.71 E-value=0.21 Score=45.03 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=32.4
Q ss_pred CCCCCccccccCCCceeeccCCcccCCcccccccccccccc
Q 017974 37 DKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 37 ~~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
..++..++.. .++.+.++.++|++||.|+.+||++++...
T Consensus 68 ~~Cp~~ai~~-~~~~v~i~~~~C~~C~~C~~~CP~~ai~~~ 107 (181)
T PRK10330 68 NVCPNGAISR-DKGFVHVMQERCIGCKTCVVACPYGAMEVV 107 (181)
T ss_pred HHcCcccEEc-cCCeEEeChhhCCCcchhhhhCCccCeEee
Confidence 3467777764 567889999999999999999999987543
No 89
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=88.70 E-value=0.18 Score=42.25 Aligned_cols=27 Identities=11% Similarity=0.455 Sum_probs=20.9
Q ss_pred CCceeecc-----CCcccCCcccccccccccc
Q 017974 49 AEPVKISL-----KDCLACSGCITSAETVMLE 75 (363)
Q Consensus 49 ~~ka~I~~-----~dCi~Cg~Cit~c~~~~i~ 75 (363)
.|...+.. +.|++||.|+.+||..++.
T Consensus 30 ~g~~~~~~~~~~~~~Ci~C~~C~~~CP~~ai~ 61 (122)
T TIGR01971 30 RGRIVLTRDPNGEEKCIGCTLCAAVCPADAIR 61 (122)
T ss_pred CCeEeeccCCCCcCcCcCcchhhhhcCHhHee
Confidence 34455555 9999999999999987654
No 90
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=88.37 E-value=0.23 Score=41.63 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=21.7
Q ss_pred eeeccCCcccCCccccccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
..+...+|+.||.|+.+||++++..
T Consensus 77 ~~~~~~~C~~Cg~Cv~~CP~~al~~ 101 (122)
T TIGR01971 77 YQINFGRCIFCGLCEEACPTDAIVL 101 (122)
T ss_pred ceECcccCCCCCchhhhCCCccccc
Confidence 5678899999999999999997653
No 91
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=88.37 E-value=0.23 Score=44.17 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=22.4
Q ss_pred eeeccCCcccCCcccccccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
..++...|+.||.|+.+||+++|...
T Consensus 92 ~~i~~~~C~~Cg~Cv~~CP~~Ai~~~ 117 (164)
T PRK05888 92 YDINFGRCIFCGFCEEACPTDAIVET 117 (164)
T ss_pred eecCCCcCcccCcchhhcCcCcceec
Confidence 55889999999999999999987543
No 92
>PRK06273 ferredoxin; Provisional
Probab=88.33 E-value=0.15 Score=45.83 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=23.7
Q ss_pred CceeeccCCcccCCcccccccccccccc
Q 017974 50 EPVKISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
....++.+.|++||.|+.+||.++|...
T Consensus 42 ~~~~id~~~CigCg~C~~aCP~~AI~~~ 69 (165)
T PRK06273 42 LPKKVFEELCIGCGGCANVCPTKAIEMI 69 (165)
T ss_pred CCCeECchhCcChhHHHHhcCccceeee
Confidence 4557899999999999999999987543
No 93
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=88.33 E-value=0.28 Score=50.08 Aligned_cols=35 Identities=17% Similarity=0.420 Sum_probs=28.4
Q ss_pred CCCCccccccCCCceeeccCCcccCCccccccccc
Q 017974 38 KPQVSTSSKQQAEPVKISLKDCLACSGCITSAETV 72 (363)
Q Consensus 38 ~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~ 72 (363)
.||.+++.-..+.+..|+.++|+.|+.||.+||..
T Consensus 253 ~Cp~~ai~~~~~~~~~id~~~C~~Cm~Ci~~~p~a 287 (402)
T TIGR02064 253 RCPTKAISWDGSKELSIDNRECVRCMHCINKMPKA 287 (402)
T ss_pred cCCccccccCCCceEEEcchhcCcCccccccCccc
Confidence 46777777443328999999999999999999984
No 94
>PLN00071 photosystem I subunit VII; Provisional
Probab=87.90 E-value=0.19 Score=39.19 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=19.8
Q ss_pred eccCCcccCCccccccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
++.++|+.||.|+.+||+.+|..
T Consensus 43 ~~~~~C~~Cg~C~~~CP~~Ai~~ 65 (81)
T PLN00071 43 PRTEDCVGCKRCESACPTDFLSV 65 (81)
T ss_pred CCCCcCcChhhHHhhcCCccceE
Confidence 45689999999999999998754
No 95
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=87.49 E-value=0.2 Score=50.52 Aligned_cols=24 Identities=17% Similarity=0.671 Sum_probs=21.4
Q ss_pred eeeccCCcccCCcccccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
+.++.++|++||.|+++||++++.
T Consensus 2 i~id~~kCi~Cg~Cv~~CP~~ai~ 25 (374)
T TIGR02512 2 IVRDMSKCIGCGRCVRACTNVQIV 25 (374)
T ss_pred EEechhhCCcChHhhhhCCHhhcc
Confidence 468899999999999999999764
No 96
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=87.44 E-value=0.16 Score=37.96 Aligned_cols=20 Identities=20% Similarity=0.584 Sum_probs=18.1
Q ss_pred CcccCCcccccccccccccc
Q 017974 58 DCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 58 dCi~Cg~Cit~c~~~~i~~~ 77 (363)
.|..||.|+.+||+++|+..
T Consensus 1 ~C~~C~~C~~~CP~~AI~~~ 20 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAISGE 20 (67)
T ss_pred CCcchhHHHHhCcHhhccCC
Confidence 59999999999999998765
No 97
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=86.85 E-value=0.21 Score=38.90 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=20.2
Q ss_pred eeccCCcccCCccccccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.+..++|+.||.|+.+||+.+|..
T Consensus 41 ~~~~~~C~~Cg~C~~~CP~~ai~~ 64 (80)
T TIGR03048 41 APRTEDCVGCKRCESACPTDFLSV 64 (80)
T ss_pred cCCCCcCcChhHHHHhcCcccCEE
Confidence 346689999999999999998654
No 98
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=86.68 E-value=0.32 Score=39.86 Aligned_cols=26 Identities=12% Similarity=0.374 Sum_probs=21.9
Q ss_pred eeeccCCcccCCcccccccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
..|..++|+.||.|+.+||+.+|...
T Consensus 48 ~~i~~~~C~~C~~C~~~CP~~AI~~~ 73 (103)
T PRK09626 48 KVVHPESCIGCRECELHCPDFAIYVA 73 (103)
T ss_pred eEeCCccCCCcCcchhhCChhhEEEe
Confidence 35778999999999999999987643
No 99
>PRK06991 ferredoxin; Provisional
Probab=86.48 E-value=0.28 Score=47.50 Aligned_cols=25 Identities=12% Similarity=0.382 Sum_probs=21.3
Q ss_pred eeccCCcccCCcccccccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
.|+..+|+.||.|+.+||+++|...
T Consensus 111 ~v~~~~CigCg~Cv~vCP~~AI~~~ 135 (270)
T PRK06991 111 TVLADLCTGCDLCVPPCPVDCIDMV 135 (270)
T ss_pred eeCHhhCCCchHHHhhCCcCCeEee
Confidence 4778999999999999999876543
No 100
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=86.47 E-value=6.7 Score=40.75 Aligned_cols=19 Identities=21% Similarity=0.707 Sum_probs=16.6
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
....|+.||.|..+||.++
T Consensus 183 ~~~~C~~C~~C~~~CP~gi 201 (486)
T PRK06259 183 GLYNCTTCGKCVEVCPKEI 201 (486)
T ss_pred CCcCCCCcCcccCcCCCCC
Confidence 4578999999999999874
No 101
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=86.42 E-value=0.33 Score=46.97 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=37.4
Q ss_pred CCCCCCCCccccccCCCceeeccCCcccCCccccccccccccccc
Q 017974 34 KNPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 34 ~~~~~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~~ 78 (363)
++.+.|+-.++-..++++-.++.+.|=+||.|.-+||..||+...
T Consensus 76 ~C~~vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~ 120 (284)
T COG1149 76 KCAEVCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEP 120 (284)
T ss_pred cHHHhCCCCeEEEcCCCceecCcccccCcccceeeCCCccccccc
Confidence 445667888887778899999999999999999999999886543
No 102
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=86.26 E-value=0.24 Score=46.67 Aligned_cols=26 Identities=23% Similarity=0.600 Sum_probs=16.7
Q ss_pred CceeeccCCcccCCcccccccccccc
Q 017974 50 EPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.+..++.++|++||.|+.+||.+++.
T Consensus 141 ~p~~id~~~C~~C~~C~~~CP~~ai~ 166 (234)
T TIGR02700 141 TPYMIDRKRCKGCGICVDACPRSAID 166 (234)
T ss_pred CceEEChhHCcCcchHHHhCCcccEE
Confidence 33456666777777777777766543
No 103
>PRK02651 photosystem I subunit VII; Provisional
Probab=86.24 E-value=0.28 Score=38.08 Aligned_cols=23 Identities=30% Similarity=0.640 Sum_probs=19.7
Q ss_pred eeccCCcccCCcccccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.++..+|+.||.|+.+||+.+|.
T Consensus 42 ~~~~~~C~~Cg~C~~~CP~~ai~ 64 (81)
T PRK02651 42 SPRTEDCVGCKRCETACPTDFLS 64 (81)
T ss_pred cCCCCcCCChhhhhhhcCCCceE
Confidence 34668999999999999998765
No 104
>PRK07118 ferredoxin; Validated
Probab=86.19 E-value=0.27 Score=47.76 Aligned_cols=39 Identities=13% Similarity=0.319 Sum_probs=30.4
Q ss_pred CCCCCccccccCCCceeeccCCcccCCccccccccccccc
Q 017974 37 DKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 37 ~~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
..+|..++.. .++.+.|+.++|+.||.|+.+||+++|..
T Consensus 223 ~~CP~~AI~~-~~~~~vId~~~C~~Cg~C~~~CP~~AI~~ 261 (280)
T PRK07118 223 KACPAGAITM-ENNLAVIDQEKCTSCGKCVEKCPTKAIRI 261 (280)
T ss_pred hhCCcCcEEE-eCCcEEEcCCcCCCHHHHHHhCCccccEe
Confidence 3467777763 66788889999999999999999887654
No 105
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=86.09 E-value=0.29 Score=54.22 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.0
Q ss_pred cCCcccCCccccccccccccccc
Q 017974 56 LKDCLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~~i~~~~ 78 (363)
..+|+.||+|+.+||++|+...+
T Consensus 203 ~~~C~~CG~Cv~VCPvGAL~~k~ 225 (819)
T PRK08493 203 TLDCSFCGECIAVCPVGALSSSD 225 (819)
T ss_pred cccccccCcHHHhCCCCccccCc
Confidence 57999999999999999886543
No 106
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=86.06 E-value=0.35 Score=43.22 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=31.3
Q ss_pred CCCCccccccCCCceeeccCCcccCCccccccccccccc
Q 017974 38 KPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 38 ~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.++..++....++...++.++|+.||.|+.+||+++|+.
T Consensus 124 aCp~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~ 162 (165)
T TIGR01944 124 ACPVDAIVGAAKAMHTVIADECTGCDLCVEPCPTDCIEM 162 (165)
T ss_pred hCCccceEecCCCceEeecccccChhHHHHhcCcCceEe
Confidence 356666665566677899999999999999999998753
No 107
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=86.02 E-value=0.4 Score=44.01 Aligned_cols=27 Identities=19% Similarity=0.502 Sum_probs=23.3
Q ss_pred CCceeeccCCcccCCcccccccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
...+.++.++|+.||.|+++||+.++.
T Consensus 106 ~~~~~id~~~Ci~Cg~Cv~aCp~~ai~ 132 (191)
T PRK05113 106 RKVAFIDEDNCIGCTKCIQACPVDAIV 132 (191)
T ss_pred CceeEEeCCcCCCCChhhhhCCHhhhe
Confidence 457889999999999999999987653
No 108
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=85.76 E-value=0.28 Score=40.61 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=21.2
Q ss_pred eeeccCCcccCCcccccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
..++.+.|++|+.|+.+||..++.
T Consensus 46 p~~d~~~Ci~C~~C~~~CP~~ai~ 69 (105)
T PRK09624 46 PEFNRDKCVRCYLCYIYCPEPAIY 69 (105)
T ss_pred EEEChhHCcChhhHHhhCCHhhEE
Confidence 468999999999999999988654
No 109
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=84.68 E-value=0.31 Score=49.50 Aligned_cols=23 Identities=22% Similarity=0.574 Sum_probs=15.0
Q ss_pred eeccCCcccCCcccccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.|+.++|+.||.|+.+||+.+++
T Consensus 326 ~Id~~~Ci~CGaCV~aCP~~AI~ 348 (391)
T TIGR03287 326 TLNTEDCFGCGYCAEICPGGAFE 348 (391)
T ss_pred eeChHhCcChHHHHhhCCccceE
Confidence 46666677777777777766554
No 110
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=84.67 E-value=0.4 Score=43.32 Aligned_cols=25 Identities=12% Similarity=0.539 Sum_probs=22.6
Q ss_pred CCceeeccCCcccCCcccccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~~~ 73 (363)
-++..++.+.|++||.|+.+||+++
T Consensus 30 rg~p~~d~~~C~~C~~Cv~~CP~~a 54 (180)
T PRK12387 30 RGKPEYNPQQCIGCAACVNACPSNA 54 (180)
T ss_pred CCceEEChhhCcChhHHHHhcCccC
Confidence 4789999999999999999999763
No 111
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=84.35 E-value=0.53 Score=54.25 Aligned_cols=32 Identities=31% Similarity=0.536 Sum_probs=25.0
Q ss_pred eeeccCCcccCCccccccccc--ccccccHHHHH
Q 017974 52 VKISLKDCLACSGCITSAETV--MLEKQSLDEFL 83 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~--~i~~~~~~~~~ 83 (363)
..++.++|+.||.|+.+||.+ +|......+.+
T Consensus 734 i~i~~~~C~gCg~Cv~~CP~~~~Al~m~~~~~~~ 767 (1165)
T TIGR02176 734 IQISPLDCTGCGNCVDICPAKEKALVMQPLAEQR 767 (1165)
T ss_pred EEeccccCcCccchhhhcCCCCccccccchhhHH
Confidence 678999999999999999995 66655444333
No 112
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=84.17 E-value=0.37 Score=49.21 Aligned_cols=40 Identities=10% Similarity=0.324 Sum_probs=30.3
Q ss_pred CCCCCCCccccccCCCceeeccCCcccCCcccccccccccc
Q 017974 35 NPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 35 ~~~~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
+...|+..++.. .+....++.++|..|+.|+.+||+.+|+
T Consensus 18 C~~~CP~~ai~~-~~~~~~i~~~~C~~C~~C~~~CP~~AI~ 57 (411)
T TIGR03224 18 CEETCPIDAITH-DDRNYVVKADVCNGCMACVSPCPTGAID 57 (411)
T ss_pred hhhhCCcccEec-cCCceEeCcccCcCHHHHHhhcCcccce
Confidence 344566666653 3345678899999999999999999875
No 113
>PRK10194 ferredoxin-type protein; Provisional
Probab=84.15 E-value=0.59 Score=41.47 Aligned_cols=39 Identities=10% Similarity=0.293 Sum_probs=26.1
Q ss_pred CCCCccccccCCC--ceeeccCCcccCCccccccccccccc
Q 017974 38 KPQVSTSSKQQAE--PVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 38 ~~~~~~~~~~~~~--ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.++..++.....+ .+.++.+.|+.|+.|+.+||++++..
T Consensus 45 aCp~~~i~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~ai~~ 85 (163)
T PRK10194 45 ACENNILQRGAGGYPSVNFKNNECSFCYACAQACPESLFSP 85 (163)
T ss_pred HcChhhcccCCCCceeeeecCCCCCCchhhHhhCcchheec
Confidence 3555666543333 34567788999999999998887543
No 114
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=84.09 E-value=0.48 Score=40.98 Aligned_cols=25 Identities=12% Similarity=0.384 Sum_probs=21.9
Q ss_pred eeeccCCcccCC-----ccccccccccccc
Q 017974 52 VKISLKDCLACS-----GCITSAETVMLEK 76 (363)
Q Consensus 52 a~I~~~dCi~Cg-----~Cit~c~~~~i~~ 76 (363)
..|+.+.|++|| .|+.+||..++..
T Consensus 3 ~~v~~~~C~gC~~~~~~~Cv~~CP~~ai~~ 32 (132)
T TIGR02060 3 TFVYPTKCDGCKAGEKTACVYICPNDLMHL 32 (132)
T ss_pred CEEccccccCccCCchhcCHhhcCccceEe
Confidence 478899999999 9999999987643
No 115
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=84.01 E-value=0.49 Score=51.03 Aligned_cols=39 Identities=10% Similarity=0.410 Sum_probs=21.6
Q ss_pred CCCCCCccccccCCCceeeccCCcccCCcccccccccccc
Q 017974 36 PDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 36 ~~~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
...|+..++.. .++.+.++.++|++|+.|+.+||+.++.
T Consensus 65 ~~~CP~~ai~~-~~~~~~id~~~C~~C~~C~~~CP~~ai~ 103 (654)
T PRK12769 65 ARSCPNGAISH-VDDSIQVNQQKCIGCKSCVVACPFGTMQ 103 (654)
T ss_pred hhhCCccceec-cCCeEEEecccccCcChhcccCCccCee
Confidence 33455555543 3345556666666666666666665543
No 116
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=83.89 E-value=0.52 Score=46.19 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=23.3
Q ss_pred CCCceeeccCCcccCCccccccccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~~~i 74 (363)
+..+..++.++|+.|+.|+.+||..++
T Consensus 238 ~~~~p~id~~~Ci~C~~C~~~CP~~ai 264 (312)
T PRK14028 238 RIDKPVIDHSKCIMCRKCWLYCPDDAI 264 (312)
T ss_pred cccceEECcccCcCcccccccCChhhh
Confidence 345778899999999999999998865
No 117
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=83.87 E-value=0.47 Score=39.18 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=22.4
Q ss_pred CceeeccCCcccCCcccccccccccc
Q 017974 50 EPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
-...++.++|++||.|+.+||..++.
T Consensus 44 ~~p~i~~~~Ci~C~~C~~~CP~~ai~ 69 (105)
T PRK09623 44 FMPVVDESKCVKCYICWKFCPEPAIY 69 (105)
T ss_pred eeEEECcccCccccchhhhCCHhheE
Confidence 45678899999999999999988654
No 118
>PRK07118 ferredoxin; Validated
Probab=83.86 E-value=0.43 Score=46.39 Aligned_cols=39 Identities=10% Similarity=0.262 Sum_probs=31.3
Q ss_pred CCCCccccccCCCceeeccCCcccCCcccccccccccccc
Q 017974 38 KPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 38 ~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
.++..++.. .++.+.++.++|++||.|+.+||+.+++..
T Consensus 150 aCp~~AI~~-~~g~~~id~~~C~~Cg~Cv~aCP~~ai~~~ 188 (280)
T PRK07118 150 ACPFDAIHI-ENGLPVVDEDKCTGCGACVKACPRNVIELI 188 (280)
T ss_pred hCCccCeEc-cCCeEEEChhhCcChhHHHHhcCccceeee
Confidence 367777763 458899999999999999999998876543
No 119
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=83.48 E-value=0.63 Score=46.40 Aligned_cols=31 Identities=13% Similarity=0.457 Sum_probs=23.2
Q ss_pred eeccCCcccCCcccccccccccccccHHHHHHhhc
Q 017974 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN 87 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~i~~~~~~~~~~~L~ 87 (363)
+....-|++||.|+++||.++ ++.++++.|+
T Consensus 297 ~fG~~~CvgCGrC~~~CP~~i----di~~~i~~i~ 327 (334)
T TIGR02910 297 RNGYHMCVGCGRCDDICPEYI----SFSNCINKLT 327 (334)
T ss_pred ccCccccCCcCchhhhCCCCC----CHHHHHHHHH
Confidence 556889999999999999883 4455555443
No 120
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=83.43 E-value=0.54 Score=50.13 Aligned_cols=27 Identities=15% Similarity=0.539 Sum_probs=23.9
Q ss_pred CCceeeccCCcccCCcccccccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
+.|++|+...|+.||.|+..||..++.
T Consensus 600 ~~k~~id~~~C~GCg~C~~iCP~~a~~ 626 (640)
T COG4231 600 FKKARIDPSSCNGCGSCVEVCPSFAIK 626 (640)
T ss_pred CCceeecccccccchhhhhcCchhhee
Confidence 689999999999999999999998765
No 121
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=83.39 E-value=2.4 Score=42.08 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCCeEEEechh---HH-------HHHHHHHHHHHHHHHhhhccCcccccCCCCCceecCChhHHHHHHh
Q 017974 115 VFKKLTTFLKSLGVKSIFDTSC---SR-------DLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEK 184 (363)
Q Consensus 115 ~~~~l~~~Lk~LGf~~V~Dta~---~a-------di~~~e~~~ef~~~~~~~~~~~~~~~~~~~PlisS~CPg~V~yiEk 184 (363)
....+...|.++|+..++--.. |. .-...+.++.-++.+.+.. ....-|-+.||+-...+.+
T Consensus 165 ~~~~~~~ll~~~g~~v~~~~~~~ccG~~~~~~G~~~~~~~~a~~n~~~~~~~~--------~~~~~iv~~~~~c~~~~~~ 236 (388)
T COG0247 165 VGKAAVRLLEKLGVEVVLPGEEGCCGAPAYRSGFLERAKKLAKKNIEAFKKLI--------EGGDPIVTVCPACYGALKK 236 (388)
T ss_pred HHHHHHHHHHHcCCeEecCCCCCcCCChhhhcCCHHHHHHHHHHHHHHHHHHh--------hccCCEEEeCcHHHhHHHH
Confidence 3467888899999877554411 11 1112222232222222100 1122466778998888888
Q ss_pred hcCCCccCC-CCCCCCHHHHHHHHHHHH-HhHhhCCCCCCeEEEEEEeccchhhh
Q 017974 185 QLGSYILPY-ISSVKSPQQTIGATIKHH-ICQKLGFRPDEIYHVTVMPCYDKKLE 237 (363)
Q Consensus 185 ~~~p~Li~~-Ls~v~SP~~i~g~liK~~-~~~~~~~~~~~i~~V~I~PC~aKK~E 237 (363)
.| |++... -.++.+..+....+++.. ........+.. +.+=-||+-.+..
T Consensus 237 ~y-~~~~~~~~~~v~~~~~~l~~~l~~~~l~~~~~~~~~~--v~yHdpC~~~r~~ 288 (388)
T COG0247 237 EY-PELLGERALKVVDLVELLAELLREGKLKLLPKLKGKI--VTYHDPCHLRRGG 288 (388)
T ss_pred HH-HHHHHhhHHHHHHHHHHHHHHHHHhccccccccCCCc--eEEEChhHHhhcC
Confidence 88 777664 556777788888877765 22111111111 6788999876654
No 122
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=83.17 E-value=0.43 Score=51.38 Aligned_cols=42 Identities=17% Similarity=0.344 Sum_probs=34.0
Q ss_pred CCCCCCCccccccCCCceeeccCCcccCCcccccccccccccc
Q 017974 35 NPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 35 ~~~~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
+...|+..++.. .++.+.++.++|++||.|+.+||+++++..
T Consensus 64 C~~~CP~~ai~~-~~~~v~~d~~~C~gC~~C~~~CP~~ai~~~ 105 (639)
T PRK12809 64 CVTACPVNALTF-QSDSVQLDEQKCIGCKRCAIACPFGVVEMV 105 (639)
T ss_pred HHhhCCcCceec-cccceecChhhCcchhhHhhhcCCCCEEcc
Confidence 444577788774 567788999999999999999999987643
No 123
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=82.89 E-value=0.65 Score=46.73 Aligned_cols=19 Identities=21% Similarity=0.772 Sum_probs=16.9
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
..++|+.||+|...||+++
T Consensus 349 ~as~CieCgqCl~~CPq~l 367 (391)
T COG1453 349 KASDCIECGQCLEKCPQHL 367 (391)
T ss_pred cccccchhhhhhhcCCCcC
Confidence 3579999999999999984
No 124
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=82.60 E-value=0.58 Score=43.63 Aligned_cols=26 Identities=12% Similarity=0.360 Sum_probs=21.8
Q ss_pred CceeeccCCcccCCccccccccc--ccc
Q 017974 50 EPVKISLKDCLACSGCITSAETV--MLE 75 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg~Cit~c~~~--~i~ 75 (363)
....|+.++|+.||.|+.+||+. +|.
T Consensus 168 ~~p~Vd~~~C~gCG~C~~~CP~~~~AI~ 195 (213)
T TIGR00397 168 QIPTVDSAKCTGCGTCEKHCVLSEAAIR 195 (213)
T ss_pred cceEEecccCCCcchhhHhCCCCCCeEE
Confidence 35688999999999999999976 554
No 125
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=82.53 E-value=0.57 Score=38.34 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=23.0
Q ss_pred CCCceeeccCCcccCCccccccccccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
-.....+..+.|+.|+.|+.+||.+++..
T Consensus 25 ~~~~~~~~~~~C~~C~~C~~~CP~~~i~~ 53 (101)
T TIGR00402 25 WSARESLFSAVCTRCGECASACENNILQL 53 (101)
T ss_pred cccccccCcCcCcChhHHHHHcCccccee
Confidence 33445677889999999999999987654
No 126
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=82.32 E-value=0.7 Score=52.35 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=29.1
Q ss_pred CCCCCCCCcc---cccc----CCCceeeccCCcccCCcccccccccccc
Q 017974 34 KNPDKPQVST---SSKQ----QAEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 34 ~~~~~~~~~~---~~~~----~~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.|.+.||+.+ ++.. ..+.+.| .+.|+.||.|..+||..+-.
T Consensus 897 ~C~~vCP~~A~~~i~~~g~~~~~~~~~~-~~~C~~CG~C~~~CP~~~~p 944 (1019)
T PRK09853 897 KCVDVCPNRANVSIAVPGFQNRFQIVHL-DAMCNECGNCAQFCPWNGKP 944 (1019)
T ss_pred hhhhhCCcccccccccCCcccCCceEEc-CccCccccchhhhCCCCCCc
Confidence 3456788888 3321 2355666 69999999999999998533
No 127
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=81.58 E-value=0.62 Score=44.53 Aligned_cols=20 Identities=25% Similarity=0.635 Sum_probs=10.0
Q ss_pred ccCCcccCCccccccccccc
Q 017974 55 SLKDCLACSGCITSAETVML 74 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~i 74 (363)
+...|..|+.|+.+||+.++
T Consensus 197 ~~~~C~~C~~C~~~Cp~~AI 216 (259)
T cd07030 197 DLEDCSLCKLCERACDAGAI 216 (259)
T ss_pred ChhhCcCchHHHHhCCCCcE
Confidence 34455555555555554443
No 128
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=81.42 E-value=0.62 Score=47.54 Aligned_cols=27 Identities=11% Similarity=0.362 Sum_probs=22.2
Q ss_pred ceeeccCCcccCCcccccccc-cccccc
Q 017974 51 PVKISLKDCLACSGCITSAET-VMLEKQ 77 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~-~~i~~~ 77 (363)
...|+.++|+.||.|+.+||+ .+|+..
T Consensus 371 ~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~ 398 (420)
T PRK08318 371 TPEVIEEECVGCNLCAHVCPVEGCITMG 398 (420)
T ss_pred eEEechhhCcccchHHhhCCCCCCEEEe
Confidence 467889999999999999998 776543
No 129
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=81.10 E-value=1.4 Score=40.59 Aligned_cols=76 Identities=20% Similarity=0.267 Sum_probs=43.4
Q ss_pred ccCCcccCCcccccccccccccccHHHHHHhhcCCCeEEEEeCcchhhHHh-------hHhCCChHHHHHHHHHHHHHcC
Q 017974 55 SLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLA-------EHFGISPLQVFKKLTTFLKSLG 127 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~i~~~~~~~~~~~L~~~k~~V~sisP~~~~sl~-------~~f~~~~~~~~~~l~~~Lk~LG 127 (363)
.+..|+.||-|..+||.+-.+.-+.-++++....+..=-+..++..++-.. -=+|.++.+....+...+-+-|
T Consensus 37 ~l~~C~QCG~CT~sCPs~r~t~y~pR~ii~~~~~g~~d~il~~~~lW~C~tCytC~eRCPr~v~i~~vv~~lR~~a~k~G 116 (195)
T COG1150 37 YLEGCYQCGTCTGSCPSGRFTDYSPRKIIRKARLGLVDLILSSESLWACVTCYTCTERCPRGVKIVEVVKALRNIAVKEG 116 (195)
T ss_pred hHhHhhccCcccCCCCCcccCCCCHHHHHHHHHcccHHHHhcCCcceeeeechhhhhhCCCCCCHHHHHHHHHHHHHHhc
Confidence 577899999999999998655555556665544432102333332211111 1146666555555555555677
Q ss_pred CeE
Q 017974 128 VKS 130 (363)
Q Consensus 128 f~~ 130 (363)
+..
T Consensus 117 ~~~ 119 (195)
T COG1150 117 LIE 119 (195)
T ss_pred ccc
Confidence 743
No 130
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=80.97 E-value=0.62 Score=43.89 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=30.4
Q ss_pred CCCCccccccCCCceeeccCCcccCCccccccccccccc
Q 017974 38 KPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 38 ~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.|+..++.. .+++..++..+|..||.|+..||+.++..
T Consensus 159 ~CP~~ai~~-~~~~~~i~~~~C~~Cg~C~~~CP~~AI~~ 196 (234)
T TIGR02700 159 ACPRSAIDM-VDGKAFIRLLKCVGCGKCKEACPYNAIHG 196 (234)
T ss_pred hCCcccEEe-cCCceEEchhhCCccchHHhhCCCCceec
Confidence 456666653 46778999999999999999999998654
No 131
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=80.91 E-value=1 Score=32.80 Aligned_cols=17 Identities=18% Similarity=0.688 Sum_probs=11.3
Q ss_pred CcccCCccccccccccc
Q 017974 58 DCLACSGCITSAETVML 74 (363)
Q Consensus 58 dCi~Cg~Cit~c~~~~i 74 (363)
.|+.||.|+.+||....
T Consensus 1 ~C~~Cg~C~~~CP~~~~ 17 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYIA 17 (61)
T ss_dssp T----STTGGGSHHHHH
T ss_pred CCCCCCcCcccCCCccc
Confidence 59999999999999864
No 132
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=80.80 E-value=0.31 Score=35.00 Aligned_cols=17 Identities=24% Similarity=0.804 Sum_probs=12.0
Q ss_pred cCCcccCCccccccccc
Q 017974 56 LKDCLACSGCITSAETV 72 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~ 72 (363)
.++|+.||.|+.+||..
T Consensus 2 ~~~Ci~Cg~C~~~CP~~ 18 (57)
T PF13183_consen 2 LSKCIRCGACTSVCPVY 18 (57)
T ss_dssp HHC--S-SHHHHCSHHH
T ss_pred HHHccCccChHHHChhh
Confidence 46899999999999955
No 133
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=80.27 E-value=0.8 Score=46.81 Aligned_cols=27 Identities=15% Similarity=0.381 Sum_probs=23.3
Q ss_pred CceeeccCCcccCCccccccccccccc
Q 017974 50 EPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.+..|+.+.|+.|+.|+.+||..++..
T Consensus 3 ~~~~id~~~Ci~C~~C~~~CP~~ai~~ 29 (411)
T TIGR03224 3 KQHLIDPEICIRCNTCEETCPIDAITH 29 (411)
T ss_pred ceeeeCcccCcCccchhhhCCcccEec
Confidence 356789999999999999999987654
No 134
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=80.19 E-value=0.72 Score=45.32 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=25.3
Q ss_pred CCCceeeccCCcccCCccccccccccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
...+-.+++.+|..||.|+..||.+||+-
T Consensus 184 ~~~~p~v~e~kc~~c~~cv~~cp~~Ai~~ 212 (354)
T COG2768 184 LDEKPVVVEEKCYDCGLCVKICPVGAITL 212 (354)
T ss_pred cccCceeeeecccccchhhhhCCCcceec
Confidence 35677899999999999999999998754
No 135
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=80.16 E-value=0.58 Score=46.57 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.2
Q ss_pred eeccCCcccCCccccccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.|+.+.|++||.|+.+||+++|..
T Consensus 8 vi~~~~C~gCg~C~~~CP~~aI~~ 31 (341)
T PRK09326 8 VIEYDVCTACGACEAVCPIGAITV 31 (341)
T ss_pred EECcccCcChHHHHHhCCHhhhec
Confidence 678899999999999999987654
No 136
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=79.90 E-value=0.72 Score=45.19 Aligned_cols=25 Identities=16% Similarity=0.448 Sum_probs=20.5
Q ss_pred eeeccCCcccCCccccccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
..++..+|..||.|+.+||+++|+.
T Consensus 284 ~~~d~~~C~gCg~C~~~CP~~AI~~ 308 (312)
T PRK14028 284 IDFDYQYCKGCGVCAEVCPTGAIQM 308 (312)
T ss_pred ecCCcccCcCcCchhhhCCHhheEe
Confidence 3456688999999999999988753
No 137
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=79.57 E-value=0.58 Score=43.64 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=19.1
Q ss_pred cCCcccCCcccccccccccccc
Q 017974 56 LKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
++.|+.||.|+.+||+.+|+..
T Consensus 52 ~~~Ci~Cg~Cv~aCP~~ai~~~ 73 (213)
T TIGR00397 52 LAACVRCGLCVEACPYDILSLA 73 (213)
T ss_pred cccccchhHHHHhCCccccccc
Confidence 4899999999999999987543
No 138
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=79.21 E-value=0.62 Score=45.12 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=24.6
Q ss_pred CCceeeccCCcccCCcccccccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
...+.|+.++|+.||.|..+|+++||.
T Consensus 61 ~~~p~i~~e~C~~CG~C~~vC~f~Ai~ 87 (284)
T COG1149 61 GEIPEIDPEKCIRCGKCAEVCRFGAIV 87 (284)
T ss_pred hhccccChhhccccCcHHHhCCCCeEE
Confidence 368999999999999999999999873
No 139
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=78.86 E-value=0.98 Score=51.28 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=27.1
Q ss_pred CCCCCCccccc-----cCCCceeeccCC-cccCCccccccccccccccc
Q 017974 36 PDKPQVSTSSK-----QQAEPVKISLKD-CLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 36 ~~~~~~~~~~~-----~~~~ka~I~~~d-Ci~Cg~Cit~c~~~~i~~~~ 78 (363)
...||..++-. ..+++..|..+. |+.||.|+.+||+.++...+
T Consensus 894 v~vCP~~Aii~i~~~~~~~~~~~i~~d~~C~~CG~C~~vCP~~a~~~~g 942 (1012)
T TIGR03315 894 VDVCPNRANIVIYVPGFRDQFQIVHLDGMCNECGNCATFCPYDGAPYKD 942 (1012)
T ss_pred hhhCChhhhhccccccccCCceeeecCccccccchHHHhCCCCccccee
Confidence 34567765311 123444455555 99999999999998765443
No 140
>PRK09898 hypothetical protein; Provisional
Probab=78.19 E-value=1.1 Score=41.37 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=22.1
Q ss_pred ccCCcccCCcccccccccccccccHHH
Q 017974 55 SLKDCLACSGCITSAETVMLEKQSLDE 81 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~i~~~~~~~ 81 (363)
...+|..||.|+.+||+++|.-.+.++
T Consensus 179 ~~~kC~~Cg~Cv~~CP~~Ai~~~~~~~ 205 (208)
T PRK09898 179 KSSKCVLCGECANACPTGALKIIEWKD 205 (208)
T ss_pred cCCcCcChHHHHHhCCcccEEEecHHH
Confidence 467999999999999999887655443
No 141
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=78.18 E-value=0.75 Score=47.45 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=23.1
Q ss_pred eeeccCCcccCCccccccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
+.|++..||+||-||.-||..+|.-
T Consensus 45 ~~ise~lCigcgicvkkcpf~ai~i 69 (592)
T KOG0063|consen 45 AFISEELCIGCGICVKKCPFEAIQI 69 (592)
T ss_pred chhhHhhhccccceeeccCcceEEe
Confidence 9999999999999999999998653
No 142
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=78.01 E-value=0.91 Score=52.38 Aligned_cols=28 Identities=11% Similarity=0.324 Sum_probs=23.5
Q ss_pred CCceeeccCCcccCCccccccccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.....++.++|+.||.|+.+||+.+|..
T Consensus 675 ~~~p~~~~~~Ci~Cg~C~~vCP~~ai~~ 702 (1165)
T TIGR02176 675 INVPVWVPDNCIQCNQCAFVCPHAAIRP 702 (1165)
T ss_pred cccceeccccCCCccchHHhcChhhccc
Confidence 3456678899999999999999998764
No 143
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=78.01 E-value=2.2 Score=42.44 Aligned_cols=125 Identities=12% Similarity=0.125 Sum_probs=64.7
Q ss_pred eccCCcccCCcccccccccccccccHHHHHHhhcCCCeEEEEeCcchhhHHhhHhCCChHHHHHHHHHHHHHcCCeEEEe
Q 017974 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFD 133 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~i~~~~~~~~~~~L~~~k~~V~sisP~~~~sl~~~f~~~~~~~~~~l~~~Lk~LGf~~V~D 133 (363)
++...|+.||.|..+||.......+ .+...+..++.-+ ...+ -+-+.....+..+|++-|++.|+=
T Consensus 50 ~d~~~C~~Cg~C~~vCP~~~~~~~~------~i~~~~~~yaa~~-----~~~s---~sGG~~t~l~~~~L~~g~Vd~V~~ 115 (341)
T PRK09326 50 AAPNVCEGCLTCSRICPVVDGYIED------ELANVRKFFGARS-----NIGG---QDGGVTSAILKSLLKQGEIDCAVG 115 (341)
T ss_pred CCcCcCcCcCchhhhCCCCcccccc------cccchhheeeecc-----cccc---ccccHHHHHHHHHHHcCCccEEEE
Confidence 5778999999999999986432111 1111111222212 1122 222334467788888888888886
Q ss_pred chhHHHHH----HHHHHHHHHHHHhhhccCcccccCCCCCceecCChhHHHHHHhhcCCCccCCCCCCCCHHHHHHHHHH
Q 017974 134 TSCSRDLT----LIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 209 (363)
Q Consensus 134 ta~~adi~----~~e~~~ef~~~~~~~~~~~~~~~~~~~PlisS~CPg~V~yiEk~~~p~Li~~Ls~v~SP~~i~g~liK 209 (363)
+....++. +....+| +.+. .++++..++. ..++...+ .. -..+.=|-.|=|+.| +|
T Consensus 116 ~~~~~~~~~~~~~~~~~ee-l~~~-----------~gSkY~~s~~----~~~l~~~~-~~-~~kVa~vG~PCqi~a--lr 175 (341)
T PRK09326 116 ITRNEKWETELVLLTSAED-VERT-----------RGTKYTYDSV----LSALREPF-EK-YDRIAVIGVPCQAHG--AR 175 (341)
T ss_pred eccCCCccceeEEECCHHH-HHHh-----------cCCcccCcch----HHHHHHHH-hc-CCeEEEEcCchhHHH--HH
Confidence 65432221 1111223 2221 2333333222 33444444 21 356666778999998 56
Q ss_pred HHH
Q 017974 210 HHI 212 (363)
Q Consensus 210 ~~~ 212 (363)
.+.
T Consensus 176 ~~~ 178 (341)
T PRK09326 176 LIR 178 (341)
T ss_pred HHH
Confidence 653
No 144
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=77.92 E-value=0.96 Score=43.30 Aligned_cols=25 Identities=24% Similarity=0.656 Sum_probs=15.2
Q ss_pred CceeeccCCcccCCcccccccccccc
Q 017974 50 EPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
..+.+ .+.|.+|+.|+.+||.+++.
T Consensus 163 p~I~i-~~~C~~C~~C~~~CP~~vi~ 187 (263)
T PRK00783 163 PRIEV-SEDCDECEKCVEACPRGVLE 187 (263)
T ss_pred ccccc-cccCCchHHHHHhCCccccE
Confidence 34444 56677777777777766543
No 145
>PRK08764 ferredoxin; Provisional
Probab=77.50 E-value=0.97 Score=39.00 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=19.1
Q ss_pred eccCCcccCCcccccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
++.++|+.||.|+.+||+.+|+
T Consensus 112 v~~~~C~~Cg~Cv~~CP~~Ai~ 133 (135)
T PRK08764 112 VIAPLCTGCELCVPACPVDCIE 133 (135)
T ss_pred ecCCcCcCccchhhhcCccceE
Confidence 4568899999999999999864
No 146
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=77.21 E-value=0.88 Score=43.60 Aligned_cols=21 Identities=14% Similarity=0.417 Sum_probs=19.4
Q ss_pred eeeccCCcccCCccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETV 72 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~ 72 (363)
..|+.+.|++||.|+.+||+.
T Consensus 179 p~Id~d~C~gCG~C~~aCP~~ 199 (254)
T PRK09476 179 PTVHSDACTGCGKCEKACVLE 199 (254)
T ss_pred eEEeHHHCcCcChhhHhcCCC
Confidence 578889999999999999987
No 147
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=76.98 E-value=0.85 Score=41.62 Aligned_cols=44 Identities=16% Similarity=0.464 Sum_probs=34.4
Q ss_pred ccCCCceeeccCCcccCCcccccccccccc--cccHHHHHHhhcCC
Q 017974 46 KQQAEPVKISLKDCLACSGCITSAETVMLE--KQSLDEFLSNINKG 89 (363)
Q Consensus 46 ~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~--~~~~~~~~~~L~~~ 89 (363)
+....-+.|+++.|++|..|+..||..+|. .+-.-.++..|..+
T Consensus 104 ~~~~~va~i~e~~ciGCtkCiqaCpvdAivg~~~~mhtv~~dlCTG 149 (198)
T COG2878 104 EQARMVALIDEANCIGCTKCIQACPVDAIVGATKAMHTVIADLCTG 149 (198)
T ss_pred cccceeeEecchhccccHHHHHhCChhhhhccchhHHHHHHHHhcC
Confidence 446678999999999999999999999764 34455666767665
No 148
>COG1146 Ferredoxin [Energy production and conversion]
Probab=76.81 E-value=1.2 Score=33.49 Aligned_cols=24 Identities=17% Similarity=0.642 Sum_probs=20.7
Q ss_pred eeeccCCcccCCcccccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
..|+.+.|.+||.|+.+||.+.+.
T Consensus 3 ~~Id~~~C~~c~~C~~~CP~~~~~ 26 (68)
T COG1146 3 IVIDYDKCIGCGICVEVCPAGVFD 26 (68)
T ss_pred eEECchhcCCCChheeccChhhEE
Confidence 468889999999999999998543
No 149
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=76.62 E-value=1.1 Score=42.91 Aligned_cols=21 Identities=14% Similarity=0.612 Sum_probs=18.3
Q ss_pred eeccCCcccCCcccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~ 73 (363)
....+.||.||.|+.+||...
T Consensus 153 ~~~~~~CI~CG~C~saCP~~~ 173 (250)
T PRK07570 153 AFDAAACIGCGACVAACPNGS 173 (250)
T ss_pred hhCccccCCCcccccccCCcc
Confidence 566889999999999999873
No 150
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=76.27 E-value=1.1 Score=43.05 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=25.8
Q ss_pred CCCCCCccccc----cCCCcee-eccCCcccCCcccccccccc
Q 017974 36 PDKPQVSTSSK----QQAEPVK-ISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 36 ~~~~~~~~~~~----~~~~ka~-I~~~dCi~Cg~Cit~c~~~~ 73 (363)
.--||..+... ...-+.+ ++.++|++|+.|+.+||...
T Consensus 182 ~~lCP~Ga~~~~~~~~~~~~i~~~d~~~C~~C~~C~~~CP~~~ 224 (271)
T PRK09477 182 GHLCPLGAFYGLIGKKSLIRVKAHDRQKCTRCMDCFHVCPEPQ 224 (271)
T ss_pred hccCCHHHHHHhcccccccccccCCcccCcccCCcCCcCCCcc
Confidence 33456655431 1223444 77899999999999999875
No 151
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=76.23 E-value=1.6 Score=45.71 Aligned_cols=29 Identities=10% Similarity=0.266 Sum_probs=19.4
Q ss_pred CCCceeeccCCcccCCcccccccccccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
..-.+.++.+.|..||.|+. ||+++|+.+
T Consensus 552 ~~~~a~vde~~C~gC~~C~~-Cpf~ais~~ 580 (622)
T COG1148 552 EPFVATVDEDKCTGCGICAE-CPFGAISVD 580 (622)
T ss_pred cccccccchhhhcCCcceee-CCCCceecc
Confidence 34456667777777777777 777776544
No 152
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=75.85 E-value=0.79 Score=33.41 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=11.8
Q ss_pred eccCCcccCCcccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~ 73 (363)
...+.|+.||.|..+||.++
T Consensus 41 ~~~~~C~~Cg~C~~~CP~~l 60 (61)
T PF13534_consen 41 HAASLCIGCGLCESVCPQGL 60 (61)
T ss_dssp TTTTT--S--HHHHH-TT--
T ss_pred cccccCcCcCcCcccccCCC
Confidence 67889999999999999874
No 153
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=75.05 E-value=1.3 Score=49.36 Aligned_cols=24 Identities=17% Similarity=0.469 Sum_probs=21.1
Q ss_pred CCceeeccCCcccCCccccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAETV 72 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~~ 72 (363)
.+....+.++||.||.||++|+.+
T Consensus 133 ~~~I~~D~~rCI~C~RCVr~C~ev 156 (819)
T PRK08493 133 WGKINYDPSLCIVCERCVTVCKDK 156 (819)
T ss_pred CCcEEechhhcccccHHHhhCccc
Confidence 356788999999999999999974
No 154
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=75.03 E-value=1.8 Score=43.45 Aligned_cols=19 Identities=16% Similarity=0.553 Sum_probs=16.8
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
....|++||.|+.+||.++
T Consensus 305 g~~~CvgCGrC~~~CP~~I 323 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPEYI 323 (344)
T ss_pred chhhCcCcCccccccCCCC
Confidence 5678999999999999873
No 155
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=74.91 E-value=1.1 Score=47.96 Aligned_cols=27 Identities=30% Similarity=0.724 Sum_probs=19.4
Q ss_pred CCceeeccCCcccCCcccc--cccccccc
Q 017974 49 AEPVKISLKDCLACSGCIT--SAETVMLE 75 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit--~c~~~~i~ 75 (363)
..++.++.++|++||.|+. .||.....
T Consensus 542 ~~~~~id~~~C~~C~~C~~~~~CP~~~~~ 570 (595)
T TIGR03336 542 AGPYKVDQDKCIGCKKCIKELGCPAIEPE 570 (595)
T ss_pred cceEEEcCCcCCCccccccccCCCCcccc
Confidence 3567777888888888888 88865433
No 156
>PRK13795 hypothetical protein; Provisional
Probab=74.76 E-value=1.3 Score=47.86 Aligned_cols=26 Identities=15% Similarity=0.463 Sum_probs=15.9
Q ss_pred CceeeccCCcccCCcccccccccccc
Q 017974 50 EPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.+..+..+.|++||.|+.+||++++.
T Consensus 574 ~~~v~~~~~C~~Cg~C~~~CP~~ai~ 599 (636)
T PRK13795 574 ARLLRRAAECVGCGVCVGACPTGAIR 599 (636)
T ss_pred CeEEEccccCCCHhHHHHhCCcccEE
Confidence 34555566666666666666666543
No 157
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=74.66 E-value=1.1 Score=43.95 Aligned_cols=22 Identities=18% Similarity=0.664 Sum_probs=19.0
Q ss_pred ceeeccCCcccCCccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETV 72 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~ 72 (363)
...++.++||.||.||++|..+
T Consensus 206 ~i~~D~nKCIlCgRCVRaC~EV 227 (297)
T PTZ00305 206 QTRVVLNRCIHCTRCVRFLNEH 227 (297)
T ss_pred ceeecCCcCcCccHHHHHHHHh
Confidence 4557789999999999999875
No 158
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=74.22 E-value=2.4 Score=36.77 Aligned_cols=16 Identities=31% Similarity=0.733 Sum_probs=14.6
Q ss_pred CCcccCCccccccccc
Q 017974 57 KDCLACSGCITSAETV 72 (363)
Q Consensus 57 ~dCi~Cg~Cit~c~~~ 72 (363)
+.|+.||.|..+||+.
T Consensus 2 ~~Ci~CG~C~~~CP~~ 17 (144)
T TIGR03290 2 KACYQCGTCTGSCPSG 17 (144)
T ss_pred ccccCCCCCcCcCCCc
Confidence 5799999999999975
No 159
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=73.84 E-value=1.8 Score=35.55 Aligned_cols=35 Identities=11% Similarity=0.286 Sum_probs=29.0
Q ss_pred CCCccccccCCCceeeccCCcccCCcccccccc-cc
Q 017974 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAET-VM 73 (363)
Q Consensus 39 ~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~-~~ 73 (363)
||.+.-+....|++.++-+.|+-||-|--.||. ++
T Consensus 47 CPA~~Y~~~~~g~l~~~yegClECGTCRvlc~~~~~ 82 (99)
T COG2440 47 CPAGCYKLIDDGKLRFDYEGCLECGTCRVLCPHSGL 82 (99)
T ss_pred CCHHHeeECCCCcEEEeecCeeeccceeEecCCCcc
Confidence 555555555669999999999999999999998 44
No 160
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=73.78 E-value=1 Score=42.39 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=23.3
Q ss_pred CceeeccCCcccCCccccccccccccc
Q 017974 50 EPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
-.+.|+.+.|++||.|+.+||.+++..
T Consensus 167 ~~~~id~~~C~~C~~C~~aCP~~ai~~ 193 (228)
T TIGR03294 167 MTKVVNQGLCMGCGTCAAACPTRAIEM 193 (228)
T ss_pred eeEEEChhhCcChhHHHHhCCHhhEEE
Confidence 346899999999999999999987654
No 161
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=73.07 E-value=0.74 Score=42.02 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=35.4
Q ss_pred CCCCccccccCCCceeeccCCcccCCcccccccccccccc
Q 017974 38 KPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 38 ~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
.+++.++-...+.-..+..+.|-+|+-||..||++.|+-+
T Consensus 126 aCpvdAivg~~~~mhtv~~dlCTGC~lCva~CPtdci~m~ 165 (198)
T COG2878 126 ACPVDAIVGATKAMHTVIADLCTGCDLCVAPCPTDCIEMQ 165 (198)
T ss_pred hCChhhhhccchhHHHHHHHHhcCCCcccCCCCCCceeee
Confidence 3788898888889999999999999999999999977643
No 162
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=73.04 E-value=1.3 Score=47.84 Aligned_cols=24 Identities=17% Similarity=0.587 Sum_probs=20.9
Q ss_pred CCceeeccCCcccCCccccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAETV 72 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~~ 72 (363)
+.....+.++||.||.||++|..+
T Consensus 608 ~~~i~~D~~kCI~CgrCv~~C~ev 631 (652)
T PRK12814 608 NGDIRFEREKCVDCGICVRTLEEY 631 (652)
T ss_pred CCCeEeccccccCchHHHHHHHHh
Confidence 445778899999999999999877
No 163
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=72.03 E-value=1.2 Score=41.88 Aligned_cols=37 Identities=8% Similarity=0.290 Sum_probs=28.2
Q ss_pred CCCCccccccCCCceeeccCCcccCCcccccccccccc
Q 017974 38 KPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 38 ~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.|+..++.. .+++..++.+.|+.||.|+.+||+..+.
T Consensus 185 aCP~~ai~~-~~~~~~i~~~~C~~C~~C~~~CP~~~~~ 221 (228)
T TIGR03294 185 ACPTRAIEM-EDGRPNVNRDRCIKCGACYVQCPRAFWP 221 (228)
T ss_pred hCCHhhEEE-eCCcEEEChhhccCHHHHHHHcCCCCcc
Confidence 355555553 3456789999999999999999998643
No 164
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=71.97 E-value=1.8 Score=41.31 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=25.7
Q ss_pred CCCCCCCcccccc----CCCceeec-cCCcccCCcccccccccc
Q 017974 35 NPDKPQVSTSSKQ----QAEPVKIS-LKDCLACSGCITSAETVM 73 (363)
Q Consensus 35 ~~~~~~~~~~~~~----~~~ka~I~-~~dCi~Cg~Cit~c~~~~ 73 (363)
+..-||..+.... ..-+...+ .++|++||.|+.+||..+
T Consensus 174 C~~~CP~Ga~~~~~~~~~~~~i~~~~~~~C~~C~~C~~vCP~~~ 217 (255)
T TIGR02163 174 CGHLCPLGAFYGLIGRKSLIKIAASDREKCTNCMDCFNVCPEPQ 217 (255)
T ss_pred hhCcCCCcchhhhhhccCceEEEeeccccCeEcCCccCcCCCCc
Confidence 3345666665321 22233444 789999999999999874
No 165
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=71.62 E-value=1.6 Score=43.76 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=15.0
Q ss_pred cCCcccCCccccccccc
Q 017974 56 LKDCLACSGCITSAETV 72 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~ 72 (363)
.++||.||+|..+||+=
T Consensus 225 ~~rCi~Cg~C~~~CPtC 241 (344)
T PRK15055 225 DSRCIACGRCNFVCPTC 241 (344)
T ss_pred HhhCccCccccccCCce
Confidence 34999999999999983
No 166
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=71.05 E-value=0.94 Score=32.43 Aligned_cols=16 Identities=19% Similarity=0.532 Sum_probs=8.5
Q ss_pred CCcccCCccccccccc
Q 017974 57 KDCLACSGCITSAETV 72 (363)
Q Consensus 57 ~dCi~Cg~Cit~c~~~ 72 (363)
..|+.||.|..+||.+
T Consensus 41 ~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 41 WSCTTCGACSEVCPVG 56 (57)
T ss_dssp GG-----HHHHH-TT-
T ss_pred cCCcCcCCccCcCccc
Confidence 8999999999999976
No 167
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=70.90 E-value=1.9 Score=43.38 Aligned_cols=23 Identities=22% Similarity=0.642 Sum_probs=19.1
Q ss_pred eeccCCcccCCcccccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
+..++.|+.||.|..+||+..+.
T Consensus 3 ~~~~~~Ci~Cg~C~~~CP~~~~~ 25 (396)
T PRK11168 3 DTSFDSCIKCTVCTTACPVARVN 25 (396)
T ss_pred ccchhhcCCCCCCCccCCCcccC
Confidence 34678999999999999998643
No 168
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=70.76 E-value=2.3 Score=43.82 Aligned_cols=22 Identities=23% Similarity=0.631 Sum_probs=17.1
Q ss_pred eeccCCcccCCccccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~i 74 (363)
+...+.|+.||.|..+||..++
T Consensus 359 ~~~~~~Ci~Cg~C~~vCP~~l~ 380 (435)
T TIGR01945 359 ESPEKPCIRCGKCVQVCPMNLL 380 (435)
T ss_pred cccCCcCcCccchhhhCccchh
Confidence 3677888888888888887643
No 169
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=70.63 E-value=2.9 Score=38.92 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=17.1
Q ss_pred eccCCcccCCcccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~ 73 (363)
-....|+.||.|..+||.++
T Consensus 191 ~~~~~C~~Cg~C~~~CP~~I 210 (220)
T TIGR00384 191 NGVWRCTTCMNCSEVCPKGV 210 (220)
T ss_pred CCCccCccccccccccCCCC
Confidence 35678999999999999874
No 170
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=70.58 E-value=1.8 Score=47.95 Aligned_cols=20 Identities=5% Similarity=-0.014 Sum_probs=16.7
Q ss_pred CcccCCcccccccccccccc
Q 017974 58 DCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 58 dCi~Cg~Cit~c~~~~i~~~ 77 (363)
+|..||+|+.+||++||+..
T Consensus 191 ~~~~cG~cv~vCP~GAl~~k 210 (797)
T PRK07860 191 QSYFSGNTVQICPVGALTGA 210 (797)
T ss_pred CccccCCchhhCCccccccc
Confidence 56789999999999988644
No 171
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=70.53 E-value=1.8 Score=46.37 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=17.1
Q ss_pred CcccCCccccccccccccccc
Q 017974 58 DCLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 58 dCi~Cg~Cit~c~~~~i~~~~ 78 (363)
+|..||+|+.+||++||...+
T Consensus 183 ~~~~cg~cv~vCP~GAl~~k~ 203 (603)
T TIGR01973 183 ESELSGNLIDICPVGALTSKP 203 (603)
T ss_pred CCcccCChHhhCCcccccccc
Confidence 577899999999999876543
No 172
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=70.08 E-value=1.8 Score=44.69 Aligned_cols=18 Identities=33% Similarity=0.831 Sum_probs=16.3
Q ss_pred cCCcccCCcccccccccc
Q 017974 56 LKDCLACSGCITSAETVM 73 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~~ 73 (363)
.++|++|+.|+.+||+++
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi 247 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGI 247 (434)
T ss_pred CCCCCChhhhHHhCCCCC
Confidence 689999999999999883
No 173
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=69.85 E-value=1.7 Score=40.98 Aligned_cols=23 Identities=17% Similarity=0.588 Sum_probs=20.2
Q ss_pred CCceeeccCCcccCCcccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAET 71 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~ 71 (363)
.....++.++|+.||.|+.+|+.
T Consensus 138 ~~~i~~d~~kCi~Cg~Cv~aC~~ 160 (234)
T PRK07569 138 HPRFGIDHNRCVLCTRCVRVCDE 160 (234)
T ss_pred CCcEEeehhhCcCccHHHHHHHH
Confidence 45677888999999999999995
No 174
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=69.74 E-value=3.2 Score=39.54 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=27.2
Q ss_pred CCCccccccCCCceeeccCCcccCC---------cccccccccccccccHH
Q 017974 39 PQVSTSSKQQAEPVKISLKDCLACS---------GCITSAETVMLEKQSLD 80 (363)
Q Consensus 39 ~~~~~~~~~~~~ka~I~~~dCi~Cg---------~Cit~c~~~~i~~~~~~ 80 (363)
|+..++..... .+..++|..|+ .|+.+||++++.-.+.+
T Consensus 142 CP~~Ai~~~~~---~~~~~KC~~C~~r~~~G~~PaCv~~CP~~Al~~g~~~ 189 (244)
T PRK14993 142 CPYDARFINHE---TQTADKCTFCVHRLEAGLLPACVESCVGGARIIGDIK 189 (244)
T ss_pred cCCCCCEEeCC---CCCcccCcCCcchhhCCCCcccchhcccCCEEEcccc
Confidence 56666653222 24568999998 79999999987644433
No 175
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=69.58 E-value=1.8 Score=40.28 Aligned_cols=19 Identities=26% Similarity=0.730 Sum_probs=16.7
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
..+.||.||.|+.+||...
T Consensus 136 ~~~~Ci~CG~C~~~CP~~~ 154 (220)
T TIGR00384 136 QLSGCILCGCCYSSCPAFW 154 (220)
T ss_pred hhhhccccccccccCCCCc
Confidence 4589999999999999873
No 176
>PRK13984 putative oxidoreductase; Provisional
Probab=69.16 E-value=1.8 Score=46.08 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=22.1
Q ss_pred CceeeccCCcccCCcccccccccccc
Q 017974 50 EPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
+.+.++.+.|++||.|+.+||..++.
T Consensus 38 ~~~~~d~~~Ci~C~~C~~~Cp~~ai~ 63 (604)
T PRK13984 38 GFHINDWEKCIGCGTCSKICPTDAIT 63 (604)
T ss_pred CccccChhhCcCccchhhhCCccceE
Confidence 45667889999999999999988654
No 177
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=69.01 E-value=1.6 Score=48.17 Aligned_cols=21 Identities=14% Similarity=0.665 Sum_probs=16.5
Q ss_pred CceeeccCCcccCCccccccc
Q 017974 50 EPVKISLKDCLACSGCITSAE 70 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg~Cit~c~ 70 (363)
.....+.++||.||.||++|.
T Consensus 137 p~i~~d~~rCi~C~rCvr~c~ 157 (776)
T PRK09129 137 PLISTEMTRCIHCTRCVRFGQ 157 (776)
T ss_pred cceeecccccccCcHHHHHHH
Confidence 346778999999999998654
No 178
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=68.92 E-value=12 Score=41.29 Aligned_cols=17 Identities=18% Similarity=0.692 Sum_probs=10.9
Q ss_pred cCCcccCCccccccccc
Q 017974 56 LKDCLACSGCITSAETV 72 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~ 72 (363)
.+.|..||.|..+||++
T Consensus 402 ~~~Ct~CG~C~evCP~g 418 (731)
T cd01916 402 FDQCVGCGRCEQECPKE 418 (731)
T ss_pred HhhhhhhhHHhhhCCCC
Confidence 45666666666666665
No 179
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=68.37 E-value=2 Score=43.79 Aligned_cols=25 Identities=20% Similarity=0.538 Sum_probs=21.4
Q ss_pred CCCceeeccCCcccCCccccccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAETV 72 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~~ 72 (363)
...++.++.++|+.||.|+.+||..
T Consensus 333 ~~~~~~~~~~~C~~C~~C~~~Cp~~ 357 (420)
T PRK08318 333 YIVYARIDQDKCIGCGRCYIACEDT 357 (420)
T ss_pred cceEEEECHHHCCCCCcccccCCCc
Confidence 3456788999999999999999964
No 180
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=67.89 E-value=1.3 Score=43.71 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=24.0
Q ss_pred eeeccCCcccCCccccccccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~~~~ 78 (363)
-.++.+.|..||.|+.+||++||+-..
T Consensus 167 P~~~~E~c~gc~~cv~~C~~gAI~~~~ 193 (317)
T COG2221 167 PKVDEELCRGCGKCVKVCPTGAITWDG 193 (317)
T ss_pred CccCHHHhchhHhHHHhCCCCceeecc
Confidence 689999999999999999999987543
No 181
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=67.84 E-value=1.9 Score=46.06 Aligned_cols=23 Identities=22% Similarity=0.674 Sum_probs=19.6
Q ss_pred CCceeeccCCcccCCcccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAET 71 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~ 71 (363)
+.....+.++||.||.||++|..
T Consensus 134 ~p~i~~d~~rCI~C~rCvr~c~e 156 (603)
T TIGR01973 134 GPLIKTEMTRCIHCTRCVRFANE 156 (603)
T ss_pred CCCeEecCCcCccccHHHHHHHH
Confidence 34567899999999999999975
No 182
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=67.49 E-value=1.9 Score=40.93 Aligned_cols=19 Identities=21% Similarity=0.810 Sum_probs=16.8
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
.+..||.||-|+++||...
T Consensus 140 ~~~~CI~Cg~C~s~CP~~~ 158 (234)
T COG0479 140 ELSECILCGCCTAACPSIW 158 (234)
T ss_pred hhhhccccchhhhhCCccc
Confidence 4679999999999999874
No 183
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=67.43 E-value=1.9 Score=47.17 Aligned_cols=22 Identities=18% Similarity=0.600 Sum_probs=19.0
Q ss_pred eccCCcccCCcccccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.....||.||.|+.+||..++.
T Consensus 367 ~~e~~CI~CG~Cv~aCP~~llP 388 (695)
T PRK05035 367 PPEQPCIRCGACADACPASLLP 388 (695)
T ss_pred CchhhcCCcccHHHHCCccchh
Confidence 3568899999999999999764
No 184
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=66.96 E-value=2.3 Score=42.51 Aligned_cols=17 Identities=35% Similarity=0.708 Sum_probs=15.5
Q ss_pred cCCcccCCccccccccc
Q 017974 56 LKDCLACSGCITSAETV 72 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~ 72 (363)
.++||+||.|..+||+=
T Consensus 219 ~~rCi~C~~C~~~CPtC 235 (334)
T TIGR02910 219 DSRCIACGRCNTVCPTC 235 (334)
T ss_pred HhhCCcCccccccCCce
Confidence 46999999999999995
No 185
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=66.94 E-value=3.2 Score=36.57 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=29.9
Q ss_pred CCCccccccCCCceeeccCCcccCC---------cccccccccccccccHHHHHH
Q 017974 39 PQVSTSSKQQAEPVKISLKDCLACS---------GCITSAETVMLEKQSLDEFLS 84 (363)
Q Consensus 39 ~~~~~~~~~~~~ka~I~~~dCi~Cg---------~Cit~c~~~~i~~~~~~~~~~ 84 (363)
++..++..... .....+|..|+ .|+.+||+.+|.-.+.+++..
T Consensus 107 CP~~ai~~~~~---~~~~~kC~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~~~~~~~~ 158 (161)
T TIGR02951 107 CPYGAPQYDPQ---QGVMGKCDGCYDRVEKGLRPACVDACPMRALDFGPIDELRA 158 (161)
T ss_pred CCCCCcEEcCC---CCccccCCCCHHHHHCCCCCcchhhccccceEEecHHHHHh
Confidence 55555542211 12357999998 899999999988777666554
No 186
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=66.83 E-value=2.1 Score=44.82 Aligned_cols=34 Identities=15% Similarity=0.405 Sum_probs=26.2
Q ss_pred eccCCcccCCccccccccccccccc--HHHHHHhhc
Q 017974 54 ISLKDCLACSGCITSAETVMLEKQS--LDEFLSNIN 87 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~i~~~~--~~~~~~~L~ 87 (363)
++.-.|-.||-|..+||.++++... .++++..++
T Consensus 584 v~~~~C~gCG~C~~aCp~gai~~~~f~~eqi~a~i~ 619 (622)
T COG1148 584 VNPLRCKGCGICSAACPSGAIDLAGFSDEQILAQIE 619 (622)
T ss_pred cChhhhCcccchhhhCCcccchhcccCHHHHHHHHh
Confidence 4567899999999999999987554 455666554
No 187
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=66.67 E-value=2.3 Score=40.61 Aligned_cols=19 Identities=26% Similarity=0.817 Sum_probs=16.6
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
...+||.||.|+.+||...
T Consensus 150 ~~~~CI~CG~C~saCP~~~ 168 (249)
T PRK08640 150 ELSKCMTCGCCLEACPNVN 168 (249)
T ss_pred hhhhccCcCcccccCCCCc
Confidence 4678999999999999774
No 188
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=66.31 E-value=2.4 Score=39.78 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.0
Q ss_pred ccCCcccCC----------ccccccccccccccc
Q 017974 55 SLKDCLACS----------GCITSAETVMLEKQS 78 (363)
Q Consensus 55 ~~~dCi~Cg----------~Cit~c~~~~i~~~~ 78 (363)
..++|..|+ .|+.+||+++|.-.+
T Consensus 150 ~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~ 183 (225)
T TIGR03149 150 SADKCNFCRDTNLAEGKLPACVESCPTKALTFGD 183 (225)
T ss_pred ccccCCCCCcchhhCCCCCcccccCccCCEEEec
Confidence 568999999 799999999876444
No 189
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=66.17 E-value=4.1 Score=39.03 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=17.4
Q ss_pred Ccee-eccCCcc-----cCCcccccccc--cccc
Q 017974 50 EPVK-ISLKDCL-----ACSGCITSAET--VMLE 75 (363)
Q Consensus 50 ~ka~-I~~~dCi-----~Cg~Cit~c~~--~~i~ 75 (363)
+.+. |+.+.|+ .||.|+.+||+ .+|+
T Consensus 129 g~av~id~~~Ci~~~~~~C~~C~~~CP~~~~AI~ 162 (254)
T PRK09476 129 GLAVLVDQENCLNFQGLRCDVCYRVCPLIDKAIT 162 (254)
T ss_pred CceeecchhhccccCCCchHHHhhhCCCccCeEE
Confidence 3444 7777787 68888888885 4543
No 190
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=65.39 E-value=1.6 Score=39.22 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=20.8
Q ss_pred ceeeccCCcccCCcccccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
...--+++||+|--|..+||..+|+
T Consensus 105 Ryp~geerCIACklCeavCPaqait 129 (212)
T KOG3256|consen 105 RYPSGEERCIACKLCEAVCPAQAIT 129 (212)
T ss_pred cCCCcchhhhhHHHHHHhCCcccce
Confidence 3445689999999999999998764
No 191
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=65.14 E-value=3.3 Score=33.53 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=24.4
Q ss_pred CCCceeeccCCcccCCcccccccccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
+..+..++.+.|+.|..|..-||..+|.
T Consensus 26 rv~rPv~d~~kCi~C~~C~~yCPe~~i~ 53 (91)
T COG1144 26 RVFRPVVDEDKCINCKLCWLYCPEPAIL 53 (91)
T ss_pred EEEeeEEcccccccCceeEEECCchhee
Confidence 4567889999999999999999998654
No 192
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=65.01 E-value=2 Score=41.84 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.9
Q ss_pred ccCCcccCCcccccccccccc
Q 017974 55 SLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
..+.|..|+.|+.+||+++|.
T Consensus 157 ~~~~C~~C~~C~~aCPt~AI~ 177 (282)
T TIGR00276 157 IEEYCGRCTKCIDACPTQALV 177 (282)
T ss_pred CCCCCccHHHHHHhcCccccc
Confidence 467999999999999999875
No 193
>PRK13795 hypothetical protein; Provisional
Probab=64.88 E-value=2.4 Score=45.87 Aligned_cols=36 Identities=14% Similarity=0.357 Sum_probs=26.4
Q ss_pred CCCCccccccCCCc---eeeccCCcccCCcccccccccccc
Q 017974 38 KPQVSTSSKQQAEP---VKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 38 ~~~~~~~~~~~~~k---a~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.|+..++. ..+. +.|+.++|+.||.|+.+||+.++.
T Consensus 592 ~CP~~ai~--~~~~~~~~~id~~~C~~Cg~C~~aCP~~a~~ 630 (636)
T PRK13795 592 ACPTGAIR--IEEGKRKISVDEEKCIHCGKCTEVCPVVKYK 630 (636)
T ss_pred hCCcccEE--eecCCceEEechhhcCChhHHHhhcCCCeeE
Confidence 35555544 2346 367889999999999999998654
No 194
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=64.64 E-value=2.7 Score=45.91 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=16.6
Q ss_pred CcccCCccccccccccccccc
Q 017974 58 DCLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 58 dCi~Cg~Cit~c~~~~i~~~~ 78 (363)
+|..||+|+.+||++|++...
T Consensus 186 ~~~~~G~cv~~CPvgAl~~k~ 206 (687)
T PRK09130 186 TSELSGNVIDLCPVGALTSKP 206 (687)
T ss_pred cccccccHHhhCCCccccccc
Confidence 366789999999999887543
No 195
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=63.62 E-value=2.8 Score=43.24 Aligned_cols=18 Identities=17% Similarity=0.647 Sum_probs=16.1
Q ss_pred ccCCcccCCccccccccc
Q 017974 55 SLKDCLACSGCITSAETV 72 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~ 72 (363)
...+||.||.|+.+||..
T Consensus 291 e~~~CIrCG~C~~~CPvy 308 (432)
T TIGR00273 291 EVLACIRCGACQNECPVY 308 (432)
T ss_pred hHhhCCCCCCccccCcch
Confidence 378999999999999976
No 196
>PRK13984 putative oxidoreductase; Provisional
Probab=63.49 E-value=4.3 Score=43.27 Aligned_cols=17 Identities=18% Similarity=0.585 Sum_probs=15.2
Q ss_pred cCCcccCCccccccccc
Q 017974 56 LKDCLACSGCITSAETV 72 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~ 72 (363)
..+|+.||.|..+||.+
T Consensus 184 ~~~C~~Cg~C~~~CP~~ 200 (604)
T PRK13984 184 AARCVECGICTDTCPAH 200 (604)
T ss_pred hhhhcCCCcccccCCCC
Confidence 35799999999999986
No 197
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=63.17 E-value=2.5 Score=46.14 Aligned_cols=21 Identities=33% Similarity=0.798 Sum_probs=18.3
Q ss_pred eeeccCCcccCCccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETV 72 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~ 72 (363)
+..+.++||.||.||+.|..+
T Consensus 140 i~~~~~rCI~C~rCvr~c~ev 160 (687)
T PRK09130 140 VKTVMTRCIHCTRCVRFATEV 160 (687)
T ss_pred EEEecccCCcccHHHHHHHhh
Confidence 677889999999999999754
No 198
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=63.06 E-value=3.1 Score=40.41 Aligned_cols=19 Identities=21% Similarity=0.714 Sum_probs=16.7
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
..+.||.||.|+.+||...
T Consensus 150 ~~~~CI~CG~C~~~CP~~~ 168 (279)
T PRK12576 150 KFAQCIWCGLCVSACPVVA 168 (279)
T ss_pred cchhCcccCcccccCCCcc
Confidence 5689999999999999763
No 199
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=63.04 E-value=2.5 Score=47.14 Aligned_cols=21 Identities=19% Similarity=0.588 Sum_probs=15.6
Q ss_pred CceeeccCCcccCCccccccc
Q 017974 50 EPVKISLKDCLACSGCITSAE 70 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg~Cit~c~ 70 (363)
.-...+.++||.||.||++|.
T Consensus 142 ~~i~~d~~rCi~C~rCVr~c~ 162 (847)
T PRK08166 142 PFISHEMNRCIACYRCVRYYK 162 (847)
T ss_pred CceEecCCcCccccHHHHHHH
Confidence 356788889998888887543
No 200
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=62.89 E-value=4.2 Score=36.51 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=24.8
Q ss_pred eeccCCcccCC------cccccccccccccccHHHHHH
Q 017974 53 KISLKDCLACS------GCITSAETVMLEKQSLDEFLS 84 (363)
Q Consensus 53 ~I~~~dCi~Cg------~Cit~c~~~~i~~~~~~~~~~ 84 (363)
.+...+|..|| .|+.+||+++|.-.+.+++..
T Consensus 125 ~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~~~~~~~ 162 (181)
T PRK10330 125 KAEANKCDLCNHREDGPACMAACPTHALICVDRNKLEQ 162 (181)
T ss_pred CceeeeCcCCCCCCCCccchhhCchhhEEEeCHHHHHH
Confidence 45667999999 899999999987665554443
No 201
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=62.83 E-value=5.1 Score=34.70 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=16.4
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
....|..||.|..+||.++
T Consensus 44 ~~~~C~~Cg~C~~~CP~~i 62 (144)
T TIGR03290 44 DLWMCTTCYTCQERCPRDV 62 (144)
T ss_pred CCCcCcCcCchhhhcCCCC
Confidence 3458999999999999984
No 202
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=62.65 E-value=3 Score=39.93 Aligned_cols=19 Identities=21% Similarity=0.627 Sum_probs=16.4
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
...+||.||-|+.+||...
T Consensus 140 ~~~~CI~CG~C~s~CPv~~ 158 (251)
T PRK12386 140 EFRKCIECFLCQNVCHVVR 158 (251)
T ss_pred chhhcccCCcccCcCCccc
Confidence 4678999999999999763
No 203
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=62.26 E-value=2.8 Score=41.45 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.4
Q ss_pred cCCcccCCcccccccccccccc
Q 017974 56 LKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
.+.|..|+.|+.+||.++|...
T Consensus 204 ~~fC~~C~~C~~~CP~~Ai~~~ 225 (314)
T TIGR02486 204 AKFCETCGKCADECPSGAISKG 225 (314)
T ss_pred cccCcchhHHHhhCCccccCCC
Confidence 3789999999999999998754
No 204
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=61.81 E-value=1.9 Score=47.23 Aligned_cols=21 Identities=19% Similarity=0.653 Sum_probs=17.6
Q ss_pred eeeccCCcccCCccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETV 72 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~ 72 (363)
..-+.+.||.||.||.+|+.+
T Consensus 144 y~ydp~qCIlCgRCVeaCqev 164 (978)
T COG3383 144 YIYDPNQCILCGRCVEACQEV 164 (978)
T ss_pred EEecchheeehhHHHHHHHhh
Confidence 345678999999999999865
No 205
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=61.20 E-value=2.9 Score=41.03 Aligned_cols=23 Identities=13% Similarity=0.556 Sum_probs=19.9
Q ss_pred ceeeccCCcccCCcccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~ 73 (363)
+.+++.+.|+.||.|+.+||..+
T Consensus 163 ~~~~d~~~C~~Cg~C~~~Cp~~a 185 (314)
T TIGR02912 163 EPQYDADRCIGCGACVKVCKKKA 185 (314)
T ss_pred CCceeCccCCcchHHHHhcChhh
Confidence 45788999999999999999753
No 206
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=61.07 E-value=5.7 Score=39.58 Aligned_cols=47 Identities=13% Similarity=0.209 Sum_probs=31.1
Q ss_pred CCCccccccCCCceeeccCCcccCCc-------------ccccccccccccccHHHHHHhh
Q 017974 39 PQVSTSSKQQAEPVKISLKDCLACSG-------------CITSAETVMLEKQSLDEFLSNI 86 (363)
Q Consensus 39 ~~~~~~~~~~~~ka~I~~~dCi~Cg~-------------Cit~c~~~~i~~~~~~~~~~~L 86 (363)
|+..++.... ........+|..|+. |+.+||+++|.-.+.++++...
T Consensus 155 CP~gai~~~~-~~~~~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG~~~el~~~a 214 (328)
T PRK10882 155 CPFNVPKYDY-NNPFGAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTREELLAEA 214 (328)
T ss_pred CCccceeccc-cccccceeecccccccchhhhhcCCCChhhhhccccceEeccHHHHHHHH
Confidence 5555554222 222345589999999 9999999988766656655443
No 207
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=60.85 E-value=3.6 Score=45.38 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=17.4
Q ss_pred CcccCCccccccccccccccc
Q 017974 58 DCLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 58 dCi~Cg~Cit~c~~~~i~~~~ 78 (363)
+|..||+|+.+||+++|....
T Consensus 185 ~~~~cg~cv~~CP~GAl~~k~ 205 (776)
T PRK09129 185 DSELSGNMIDLCPVGALTSKP 205 (776)
T ss_pred cCcccCCchhhCCcccccccc
Confidence 477799999999999886543
No 208
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=60.55 E-value=4.2 Score=38.56 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=16.3
Q ss_pred cCCcccCCcccccccccc
Q 017974 56 LKDCLACSGCITSAETVM 73 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~~ 73 (363)
...|..||.|..+||.++
T Consensus 200 l~~C~~C~~C~~vCPkgI 217 (235)
T PRK12575 200 LFRCRTIMNCVDVCPKGL 217 (235)
T ss_pred cccccCcchhccccCCCC
Confidence 569999999999999874
No 209
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=60.40 E-value=6 Score=37.13 Aligned_cols=19 Identities=11% Similarity=0.349 Sum_probs=16.5
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
....|+.||.|..+||.++
T Consensus 196 ~i~~C~~Cg~C~~~CP~gi 214 (232)
T PRK05950 196 GVFRCHTIMNCVEVCPKGL 214 (232)
T ss_pred ccccCcCcCCcCccccCCC
Confidence 3479999999999999874
No 210
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=60.21 E-value=4.4 Score=44.32 Aligned_cols=63 Identities=16% Similarity=0.341 Sum_probs=38.5
Q ss_pred CCCCCcccCCCcccccccccCC-------C------CCCCCCCCcccc---------ccCCCceeeccCCcccCCccccc
Q 017974 11 IGDLSDFIAPSQNCVVSLKKAT-------F------KNPDKPQVSTSS---------KQQAEPVKISLKDCLACSGCITS 68 (363)
Q Consensus 11 ~~~l~d~i~p~~~ci~p~~~~~-------~------~~~~~~~~~~~~---------~~~~~ka~I~~~dCi~Cg~Cit~ 68 (363)
+.+||--+.....||+=..... . .|...||..++- ........+...+|+.||.|.-+
T Consensus 341 ~~~~d~pv~K~t~~il~~~~~~~~~~~~e~~CI~CG~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~~~~~CieCG~C~~v 420 (695)
T PRK05035 341 LPSLDVPVVKTTNCLLAPSATELPPPPPEQPCIRCGACADACPASLLPQQLYWFAKAEEHDKAQEYNLFDCIECGACAYV 420 (695)
T ss_pred cccCCCCeecceeEEEecccccccCCCchhhcCCcccHHHHCCccchhhhHHHhhhccccchhhhcChhhccccCccccc
Confidence 5667666777777776442211 1 122346666552 11122235677899999999999
Q ss_pred ccccc
Q 017974 69 AETVM 73 (363)
Q Consensus 69 c~~~~ 73 (363)
||..+
T Consensus 421 CPs~I 425 (695)
T PRK05035 421 CPSNI 425 (695)
T ss_pred CCCCC
Confidence 99984
No 211
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=60.13 E-value=3.4 Score=45.85 Aligned_cols=22 Identities=18% Similarity=0.631 Sum_probs=18.8
Q ss_pred ceeeccCCcccCCccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETV 72 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~ 72 (363)
....+.++||.|+.||++|..+
T Consensus 144 ~i~~d~~rCI~C~rCvr~c~ev 165 (797)
T PRK07860 144 QVLLDRERCVLCARCTRFSDQI 165 (797)
T ss_pred ceeecccccccCcHHHHHHHhh
Confidence 4567899999999999999763
No 212
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=59.91 E-value=3 Score=39.55 Aligned_cols=19 Identities=26% Similarity=0.779 Sum_probs=16.5
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
...+||.||-|..+||...
T Consensus 147 ~~~~CI~Cg~C~saCP~~~ 165 (239)
T PRK13552 147 ELDRCIECGCCVAACGTKQ 165 (239)
T ss_pred chhhccccchhHhhCCCCc
Confidence 5678999999999999763
No 213
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=59.86 E-value=3.6 Score=45.88 Aligned_cols=21 Identities=5% Similarity=0.086 Sum_probs=17.8
Q ss_pred CcccCCccccccccccccccc
Q 017974 58 DCLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 58 dCi~Cg~Cit~c~~~~i~~~~ 78 (363)
+|-.||+||.+||+++++...
T Consensus 190 ~~~~~G~cv~vCP~GAl~~k~ 210 (847)
T PRK08166 190 ESEFSGNLVEVCPTGVFTDKT 210 (847)
T ss_pred cChhhCChHhhCCchhccccc
Confidence 678899999999999876443
No 214
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=59.70 E-value=3.7 Score=42.29 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=17.6
Q ss_pred CcccCCcccccccccccccccHHHHHHhh
Q 017974 58 DCLACSGCITSAETVMLEKQSLDEFLSNI 86 (363)
Q Consensus 58 dCi~Cg~Cit~c~~~~i~~~~~~~~~~~L 86 (363)
+|+.||.|..+||..+--.+.+...++.|
T Consensus 403 ~C~~Cg~C~~vCP~~i~l~~~ir~~k~~l 431 (435)
T TIGR01945 403 DCIECGCCSYVCPSNIPLVQYIRQAKAKL 431 (435)
T ss_pred cCCcCCCcccccCCCCCHHHHHHHHHHHH
Confidence 68888888888887743233333444444
No 215
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=59.64 E-value=3.4 Score=39.29 Aligned_cols=18 Identities=17% Similarity=0.676 Sum_probs=15.9
Q ss_pred ccCCcccCCccccccccc
Q 017974 55 SLKDCLACSGCITSAETV 72 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~ 72 (363)
..++||.||-|+.+||..
T Consensus 145 ~~~~CI~Cg~C~saCP~~ 162 (244)
T PRK12385 145 QFSGCINCGLCYAACPQF 162 (244)
T ss_pred HHHhcCcCccccCcCcCc
Confidence 356999999999999976
No 216
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=58.84 E-value=4.1 Score=41.01 Aligned_cols=18 Identities=22% Similarity=0.715 Sum_probs=15.9
Q ss_pred ccCCcccCCccccccccc
Q 017974 55 SLKDCLACSGCITSAETV 72 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~ 72 (363)
+.+.|+.||.|..+||+-
T Consensus 3 ~~~~Ci~Cg~C~~~Cp~~ 20 (397)
T TIGR03379 3 SFESCIKCTVCTVYCPVA 20 (397)
T ss_pred chhhCCCCCCCcccCcCc
Confidence 357899999999999985
No 217
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=58.81 E-value=2.6 Score=44.24 Aligned_cols=19 Identities=26% Similarity=0.717 Sum_probs=16.8
Q ss_pred CcccCCccccccccccccc
Q 017974 58 DCLACSGCITSAETVMLEK 76 (363)
Q Consensus 58 dCi~Cg~Cit~c~~~~i~~ 76 (363)
-|+.||.|..+||..++.+
T Consensus 366 sCi~C~~C~d~CP~~Llp~ 384 (529)
T COG4656 366 SCIRCSLCADACPVNLLPQ 384 (529)
T ss_pred ccccHHHHHHhCccccCHH
Confidence 8999999999999987544
No 218
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=58.75 E-value=4.8 Score=41.04 Aligned_cols=28 Identities=18% Similarity=0.428 Sum_probs=23.3
Q ss_pred CCceeeccCCcccCCccc--cccccccccc
Q 017974 49 AEPVKISLKDCLACSGCI--TSAETVMLEK 76 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Ci--t~c~~~~i~~ 76 (363)
.....++.++|++|+.|+ .+||+.++..
T Consensus 294 ~~~p~id~dkCi~Cg~C~~~~aCPt~AI~~ 323 (391)
T TIGR03287 294 DVRPKYNPERCENCDPCLVEEACPVPAIKK 323 (391)
T ss_pred ceeEEEchhhCcCCCCCcCCcCCCHhhEec
Confidence 356678899999999995 8999998753
No 219
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=58.17 E-value=3.7 Score=39.29 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=20.5
Q ss_pred eeccCCcccCCcccccccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
.+....|..|+.|+..||..+++..
T Consensus 195 v~~~~~C~~C~~Ci~~CP~~AI~i~ 219 (263)
T PRK00783 195 VTDLLNCSLCKLCERACPGKAIRVS 219 (263)
T ss_pred EeChhhCCCchHHHHhCCCCceEEE
Confidence 3467789999999999999887543
No 220
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=55.96 E-value=3.3 Score=45.24 Aligned_cols=23 Identities=22% Similarity=0.697 Sum_probs=19.7
Q ss_pred ceeeccCCcccCCcccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~ 73 (363)
.+..+.++||.|+.||+.|..++
T Consensus 138 ~v~~dm~RCI~C~RCVR~c~eia 160 (693)
T COG1034 138 LVKYDMNRCILCTRCVRFCKEIA 160 (693)
T ss_pred hhhcccccceechhhHHhhhhhc
Confidence 34489999999999999998873
No 221
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=55.96 E-value=4.6 Score=29.89 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=16.4
Q ss_pred CceeeccCCcc------cCCccccccccc
Q 017974 50 EPVKISLKDCL------ACSGCITSAETV 72 (363)
Q Consensus 50 ~ka~I~~~dCi------~Cg~Cit~c~~~ 72 (363)
....++...|. .||.|+.+||+.
T Consensus 39 ~~~~~~~~~c~~~~~~~~C~~C~~vCP~N 67 (67)
T PF13484_consen 39 KKWRIDWEKCVSYWDCYGCGICQKVCPFN 67 (67)
T ss_pred cCccchHHhhhcCCCccccchhhccCCCC
Confidence 34445555555 999999999963
No 222
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=55.28 E-value=9.9 Score=41.06 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=30.9
Q ss_pred CCCCccccccC----CCceeeccCCcccCC------cccccccccccccccHHHHH
Q 017974 38 KPQVSTSSKQQ----AEPVKISLKDCLACS------GCITSAETVMLEKQSLDEFL 83 (363)
Q Consensus 38 ~~~~~~~~~~~----~~ka~I~~~dCi~Cg------~Cit~c~~~~i~~~~~~~~~ 83 (363)
.|+..++.... .....+...+|..|+ .|+.+||+.+|...+.+++.
T Consensus 96 ~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~~~~~p~Cv~~CP~~Ai~~~~~~~~~ 151 (654)
T PRK12769 96 ACPFGTMQIVLTPVAAGKVKATAHKCDLCAGRENGPACVENCPADALQLVTEQALS 151 (654)
T ss_pred cCCccCeeecccCCcccceeeecCcCcCCCCCCCCCceeccCCcCcEEEecHHHHH
Confidence 46666655221 123467778999999 89999999988655434433
No 223
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=54.97 E-value=4.7 Score=40.06 Aligned_cols=17 Identities=18% Similarity=0.741 Sum_probs=15.5
Q ss_pred cCCcccCCccccccccc
Q 017974 56 LKDCLACSGCITSAETV 72 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~ 72 (363)
..+||.||.|..+||..
T Consensus 151 ~~~Ci~CG~C~s~CP~~ 167 (329)
T PRK12577 151 TGNCILCGACYSECNAR 167 (329)
T ss_pred hhhCcccCcccccCCCC
Confidence 57799999999999976
No 224
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=54.44 E-value=4.7 Score=38.22 Aligned_cols=19 Identities=26% Similarity=0.726 Sum_probs=16.5
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
....||.||-|..+||+..
T Consensus 142 ~~~~CI~CG~C~s~CP~~~ 160 (235)
T PRK12575 142 GLYECILCACCSTACPSYW 160 (235)
T ss_pred hhhhCcccccccccccCcc
Confidence 5567999999999999874
No 225
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=54.37 E-value=5 Score=39.01 Aligned_cols=16 Identities=31% Similarity=0.814 Sum_probs=14.6
Q ss_pred CCcccCCccccccccc
Q 017974 57 KDCLACSGCITSAETV 72 (363)
Q Consensus 57 ~dCi~Cg~Cit~c~~~ 72 (363)
.+||.||-|..+||..
T Consensus 187 ~~CI~CG~C~saCPv~ 202 (276)
T PLN00129 187 YECILCACCSTSCPSY 202 (276)
T ss_pred hhCccccccccccCCC
Confidence 4799999999999976
No 226
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=54.09 E-value=4.1 Score=38.88 Aligned_cols=21 Identities=29% Similarity=0.620 Sum_probs=18.4
Q ss_pred cCCcccCCccccccccccccc
Q 017974 56 LKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.++|.+|+.|+.+||.+++..
T Consensus 168 ~~~C~~C~~C~~~CP~~vi~~ 188 (259)
T cd07030 168 DEDCDGCGKCVEECPRGVLEL 188 (259)
T ss_pred hhhCCChHHHHHhCCccceEc
Confidence 489999999999999997653
No 227
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=52.43 E-value=4.5 Score=41.64 Aligned_cols=24 Identities=13% Similarity=0.472 Sum_probs=18.8
Q ss_pred CCceeeccC-------CcccCCccccccccc
Q 017974 49 AEPVKISLK-------DCLACSGCITSAETV 72 (363)
Q Consensus 49 ~~ka~I~~~-------dCi~Cg~Cit~c~~~ 72 (363)
||+..+..+ .||-||.|+.+||.-
T Consensus 293 NGRs~~~~~~~~re~L~CIRCGaC~n~CPvY 323 (459)
T COG1139 293 NGRSEALADEEFREALRCIRCGACLNHCPVY 323 (459)
T ss_pred CCchhhccChHHHHHHHhhcchHhhhcChhh
Confidence 455555555 699999999999964
No 228
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=52.36 E-value=7.1 Score=37.13 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=16.0
Q ss_pred cCCcccCCcccccccccc
Q 017974 56 LKDCLACSGCITSAETVM 73 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~~ 73 (363)
...|..||.|..+||.++
T Consensus 202 l~~C~~C~~C~~vCP~~I 219 (244)
T PRK12385 202 VWSCTFVGYCSEVCPKHV 219 (244)
T ss_pred hhhCcCcccccccCCCCC
Confidence 359999999999999984
No 229
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=52.30 E-value=7.4 Score=37.30 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=16.8
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
.+..|..||.|..+||.++
T Consensus 198 gl~~C~~C~~C~~vCPkgI 216 (251)
T PRK12386 198 GLGYCNITKCCTEVCPEHI 216 (251)
T ss_pred CcccCcCCCCcCCcCCCCc
Confidence 4667999999999999985
No 230
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=52.23 E-value=7.5 Score=40.16 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=16.7
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
....|..||.|..+||.++
T Consensus 341 ~~~~C~~Cg~C~~vCP~gI 359 (432)
T TIGR00273 341 LPYLSSLCGACREVCPVKI 359 (432)
T ss_pred cCccchhhhhhhccCCCCC
Confidence 3478999999999999984
No 231
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=51.99 E-value=5.3 Score=37.50 Aligned_cols=19 Identities=32% Similarity=0.767 Sum_probs=16.6
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
....|+.||.|..+||...
T Consensus 139 ~~~~Ci~Cg~C~~~CP~~~ 157 (232)
T PRK05950 139 GLYECILCACCSTSCPSFW 157 (232)
T ss_pred hHHhccccccccccCCccc
Confidence 5679999999999999763
No 232
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=51.32 E-value=9.9 Score=38.13 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.2
Q ss_pred ceeeccCCcccCCcccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~ 73 (363)
...-..+.|+.||.|.++||.++
T Consensus 48 ~~~~~~~~C~~C~~C~~~CP~~i 70 (396)
T PRK11168 48 LYDESLKYCSNCKRCEVACPSGV 70 (396)
T ss_pred hcCCCCCcCcCcCccCcccCCCC
Confidence 44456789999999999999873
No 233
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=51.26 E-value=4.8 Score=41.78 Aligned_cols=21 Identities=0% Similarity=-0.268 Sum_probs=17.4
Q ss_pred eccCCcccCCccccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~i 74 (363)
-...-||.||.|+.+||..+.
T Consensus 370 ~~~~aCI~CG~C~~vCPm~L~ 390 (447)
T TIGR01936 370 GGERAMIPIGIYERVMPLDIP 390 (447)
T ss_pred CCccceeECChHhhcCCCCCC
Confidence 445679999999999998853
No 234
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=49.94 E-value=8.6 Score=36.72 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=16.1
Q ss_pred cCCcccCCcccccccccc
Q 017974 56 LKDCLACSGCITSAETVM 73 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~~ 73 (363)
.-+|..||.|..+||.++
T Consensus 208 ~~~C~~Cg~C~~vCPkgI 225 (249)
T PRK08640 208 IADCGNAQNCVRVCPKGI 225 (249)
T ss_pred eeCCcCcCcccccCCCCC
Confidence 478999999999999874
No 235
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=49.90 E-value=8.3 Score=36.59 Aligned_cols=18 Identities=17% Similarity=0.495 Sum_probs=16.1
Q ss_pred cCCcccCCcccccccccc
Q 017974 56 LKDCLACSGCITSAETVM 73 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~~ 73 (363)
.-.|..||.|..+||.++
T Consensus 205 i~~C~~C~~C~~vCPk~I 222 (239)
T PRK13552 205 VFGCMSLLGCEDNCPKDL 222 (239)
T ss_pred cCCCcCcCccchhCCCCC
Confidence 469999999999999874
No 236
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=49.02 E-value=7.8 Score=37.09 Aligned_cols=19 Identities=11% Similarity=0.356 Sum_probs=16.7
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
...+|+.||.|..+||.++
T Consensus 210 gv~~C~~Cg~Cs~VCPk~I 228 (250)
T PRK07570 210 GFGNCTNTGECEAVCPKGI 228 (250)
T ss_pred CcccCcccCccccccCCCC
Confidence 4568999999999999985
No 237
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=47.91 E-value=11 Score=36.48 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=16.5
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
....|..||.|..+||.++
T Consensus 204 ~i~~C~~Cg~C~~~CP~~I 222 (279)
T PRK12576 204 SSWRCTYCYSCSNVCPRDI 222 (279)
T ss_pred cCCcccCcccchhhCCCCC
Confidence 3479999999999999874
No 238
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=47.67 E-value=11 Score=38.08 Aligned_cols=17 Identities=35% Similarity=0.843 Sum_probs=15.7
Q ss_pred cCCcccCCccccccccc
Q 017974 56 LKDCLACSGCITSAETV 72 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~ 72 (363)
...|+.||.|.++||.+
T Consensus 72 ~~~C~~C~~C~~~CP~~ 88 (407)
T PRK11274 72 LDRCLTCRNCETTCPSG 88 (407)
T ss_pred cccCccccchhhhCCCC
Confidence 57999999999999986
No 239
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=47.49 E-value=11 Score=40.45 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=21.1
Q ss_pred CCceeeccCCcccCCccccccccccc
Q 017974 49 AEPVKISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~c~~~~i 74 (363)
+++..|+. .|+.||.|+.+||+.+|
T Consensus 571 ~~~~~i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 571 DKEAVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred CCcceeCC-CCcCHHHHHhhCccccC
Confidence 45677877 89999999999998764
No 240
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=46.72 E-value=6.9 Score=39.50 Aligned_cols=19 Identities=26% Similarity=0.667 Sum_probs=16.2
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
..+.|+.||.|..+||...
T Consensus 21 ~~~~C~~Cg~C~~~CP~~~ 39 (407)
T PRK11274 21 ILRKCVHCGFCTATCPTYQ 39 (407)
T ss_pred HHHhCccCCCccccCCccc
Confidence 4578999999999999753
No 241
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=46.56 E-value=7.5 Score=40.39 Aligned_cols=21 Identities=5% Similarity=-0.129 Sum_probs=17.8
Q ss_pred eeccCCcccCCcccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~ 73 (363)
.....-||.||.|+.+||..+
T Consensus 370 ~~~~~~CI~Cg~C~~vCP~~L 390 (448)
T PRK05352 370 NGSERAMVPIGNYERVMPLDI 390 (448)
T ss_pred CCCCcceeecCcHhhcCCCCC
Confidence 345779999999999999864
No 242
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=46.36 E-value=11 Score=39.17 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=23.3
Q ss_pred CCceeeccCCcccCC--ccccccccccccc
Q 017974 49 AEPVKISLKDCLACS--GCITSAETVMLEK 76 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg--~Cit~c~~~~i~~ 76 (363)
+.........|.+|+ .|+.+||+++|..
T Consensus 173 ~~~m~y~p~~C~HC~nP~CV~ACPtGAI~k 202 (492)
T TIGR01660 173 NTFMMYLPRLCEHCLNPACVASCPSGAIYK 202 (492)
T ss_pred CceEEECCCcCcCCCcccchhhCccCCeEE
Confidence 345567889999998 9999999999863
No 243
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=45.98 E-value=8.6 Score=42.29 Aligned_cols=23 Identities=13% Similarity=0.394 Sum_probs=19.0
Q ss_pred ceeeccCCcccCCcccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~ 73 (363)
...-..+.|+.||.|+.+||..+
T Consensus 359 el~~~~~kCI~CG~Cv~aCP~~l 381 (731)
T cd01916 359 EFQELAAKCTDCGWCTRACPNSL 381 (731)
T ss_pred HHHHhhhcCCCCCcccccCCCCC
Confidence 44556789999999999999873
No 244
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=45.27 E-value=8.2 Score=42.67 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=14.8
Q ss_pred eeccCCcccCCccccccccc
Q 017974 53 KISLKDCLACSGCITSAETV 72 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~ 72 (363)
....+.|+.||.|..+||.+
T Consensus 433 ~~~~d~C~~CG~C~evCP~g 452 (784)
T TIGR00314 433 EQLEEQCYACGRCEQACPKN 452 (784)
T ss_pred ccCHhhhhhhhHHhccCCCC
Confidence 33456788888888888876
No 245
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=45.03 E-value=6.3 Score=40.79 Aligned_cols=15 Identities=27% Similarity=0.930 Sum_probs=14.2
Q ss_pred CCcccCCcccccccc
Q 017974 57 KDCLACSGCITSAET 71 (363)
Q Consensus 57 ~dCi~Cg~Cit~c~~ 71 (363)
.+|+.||.|+.+||.
T Consensus 255 ~~Ci~Cg~CidaCp~ 269 (434)
T TIGR02745 255 LECINCGLCIDACDD 269 (434)
T ss_pred hhChhhhHHHHhCCC
Confidence 689999999999997
No 246
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=44.01 E-value=14 Score=36.78 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=22.7
Q ss_pred CceeeccCCcccCC--ccccccccccccc
Q 017974 50 EPVKISLKDCLACS--GCITSAETVMLEK 76 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg--~Cit~c~~~~i~~ 76 (363)
.........|..|+ .|+.+||++||.+
T Consensus 122 ~~~~y~p~~C~hC~nP~Cv~aCPtgAI~k 150 (321)
T TIGR03478 122 NYYFYLPRICNHCTNPACLAACPTGAIYK 150 (321)
T ss_pred ceEEEecccCCCCCCccchhhCCcCcEEE
Confidence 34556899999999 8999999999854
No 247
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=44.00 E-value=9.2 Score=39.71 Aligned_cols=19 Identities=21% Similarity=0.803 Sum_probs=16.3
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
..+.|+.||.|..+||...
T Consensus 131 ~~~~Ci~CG~C~~~CP~~~ 149 (486)
T PRK06259 131 KLRGCIECLSCVSTCPARK 149 (486)
T ss_pred CchhcccCccccccCCCCc
Confidence 4578999999999999763
No 248
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=43.92 E-value=7 Score=39.12 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=18.3
Q ss_pred CCcccCCccccccccccccc
Q 017974 57 KDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 57 ~dCi~Cg~Cit~c~~~~i~~ 76 (363)
+.|=.|..|+.+||++++..
T Consensus 185 ~~Cg~C~~CldaCPt~Al~~ 204 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVA 204 (337)
T ss_pred ccChhhHHHHhhCCcccccC
Confidence 99999999999999998654
No 249
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=43.73 E-value=15 Score=37.03 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=17.5
Q ss_pred eccCCcccCCcccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~ 73 (363)
-..+.|+.||.|.++||.+.
T Consensus 49 ~~~~~C~~C~~C~~~CP~~i 68 (397)
T TIGR03379 49 EALKYCTNCKRCEVACPSDV 68 (397)
T ss_pred cccccCcCcCccchhcCCCC
Confidence 35789999999999999973
No 250
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=43.26 E-value=13 Score=36.15 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=16.9
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
....|..||.|..+||.++
T Consensus 242 gl~~C~~C~~C~~vCPkgI 260 (276)
T PLN00129 242 KLYRCHTIRNCSNACPKGL 260 (276)
T ss_pred CCCcCcChhhccccCCCCC
Confidence 4589999999999999874
No 251
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=42.93 E-value=10 Score=41.96 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=18.8
Q ss_pred ceeeccCCcccCCcccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~ 73 (363)
.+.-..++|+.||.|+.+||..+
T Consensus 398 El~~eadrCI~CG~Cv~aCP~~l 420 (781)
T PRK00941 398 ELKELAKKCTECGWCVRVCPNEL 420 (781)
T ss_pred HHHHhhhhCcCCCCccccCCCCc
Confidence 44446789999999999999864
No 252
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=42.54 E-value=9.5 Score=38.85 Aligned_cols=16 Identities=19% Similarity=0.681 Sum_probs=14.6
Q ss_pred cCCcccCCcccccccc
Q 017974 56 LKDCLACSGCITSAET 71 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~ 71 (363)
.+.|..||.|...||+
T Consensus 66 a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 66 ANLCHNCGACLHACQY 81 (389)
T ss_pred HHhCcCcccccccCcC
Confidence 4589999999999998
No 253
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=41.04 E-value=11 Score=41.61 Aligned_cols=20 Identities=15% Similarity=0.597 Sum_probs=17.2
Q ss_pred eccCCcccCCcccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~ 73 (363)
-..+.|+.||.|+.+||..+
T Consensus 396 ~~~~kCI~CG~Cv~aCP~~l 415 (784)
T TIGR00314 396 ELANKCTQCGNCVRTCPNSL 415 (784)
T ss_pred hhcccCCCcccchhhCCCCc
Confidence 34589999999999999874
No 254
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=39.81 E-value=8.3 Score=35.85 Aligned_cols=23 Identities=17% Similarity=0.587 Sum_probs=19.4
Q ss_pred CceeeccCCcccCCccccccccc
Q 017974 50 EPVKISLKDCLACSGCITSAETV 72 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg~Cit~c~~~ 72 (363)
-...|+.++||+|..|+.+|...
T Consensus 11 ~~~~~D~~rCiGC~aC~~AC~~~ 33 (203)
T COG0437 11 YAFVIDSSRCIGCKACVVACKEE 33 (203)
T ss_pred eEEEEecccccCcHHHHHHHHHh
Confidence 34678999999999999999644
No 255
>PF13592 HTH_33: Winged helix-turn helix
Probab=39.64 E-value=25 Score=25.74 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=25.4
Q ss_pred hhhHHhhHhCCChHHHHHHHHHHHHHcCCeEEEec
Q 017974 100 SRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDT 134 (363)
Q Consensus 100 ~~~sl~~~f~~~~~~~~~~l~~~Lk~LGf~~V~Dt 134 (363)
...-+...||... +...+...|+++||.+.-=.
T Consensus 10 i~~~I~~~fgv~y--s~~~v~~lL~r~G~s~~kp~ 42 (60)
T PF13592_consen 10 IAAYIEEEFGVKY--SPSGVYRLLKRLGFSYQKPR 42 (60)
T ss_pred HHHHHHHHHCCEE--cHHHHHHHHHHcCCccccCC
Confidence 3446788899775 57899999999999875443
No 256
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=38.76 E-value=18 Score=37.38 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=26.7
Q ss_pred CceeeccCCcccCC--ccccccccc--------ccccccHHHHHHhhcC
Q 017974 50 EPVKISLKDCLACS--GCITSAETV--------MLEKQSLDEFLSNINK 88 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg--~Cit~c~~~--------~i~~~~~~~~~~~L~~ 88 (363)
+.+.--.++|+.|+ -|..+||.+ ++...++.+-++.|..
T Consensus 33 ~~~~~~~~~c~~c~~~~C~~~CP~~~~~~~~~~~~~~g~~~~a~~~~~~ 81 (467)
T TIGR01318 33 GQAQYQADRCLYCGNPYCEWKCPVHNAIPQWLQLVQEGRIDEAAELSHQ 81 (467)
T ss_pred HHHHHHHHhcccCCCccccccCCCCCcHHHHHHHHHCCCHHHHHHHHHH
Confidence 45666788999998 699999997 2334445555555443
No 257
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=37.66 E-value=15 Score=36.44 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=16.0
Q ss_pred cCCcccCCcccccccccc
Q 017974 56 LKDCLACSGCITSAETVM 73 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~~ 73 (363)
...|..|+.|..+||.++
T Consensus 208 iw~C~~C~~C~~~CPk~I 225 (329)
T PRK12577 208 VWGCTRCYYCNSVCPMEV 225 (329)
T ss_pred cccCcChhhhhhhCCCCC
Confidence 468999999999999874
No 258
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=36.51 E-value=13 Score=36.46 Aligned_cols=18 Identities=6% Similarity=-0.274 Sum_probs=14.8
Q ss_pred cCCccccccccccccccc
Q 017974 61 ACSGCITSAETVMLEKQS 78 (363)
Q Consensus 61 ~Cg~Cit~c~~~~i~~~~ 78 (363)
.||+|+.+||+++|...+
T Consensus 257 ~~g~cvdvCPvGAL~~~d 274 (297)
T PTZ00305 257 NNMPVSQLCPVGKLYLGD 274 (297)
T ss_pred CCCceeeECCCcccccCC
Confidence 478899999999986555
No 259
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=36.32 E-value=12 Score=31.32 Aligned_cols=35 Identities=20% Similarity=0.491 Sum_probs=21.4
Q ss_pred eeeccCCcccC--CcccccccccccccccHHHHHHhhcCCC
Q 017974 52 VKISLKDCLAC--SGCITSAETVMLEKQSLDEFLSNINKGK 90 (363)
Q Consensus 52 a~I~~~dCi~C--g~Cit~c~~~~i~~~~~~~~~~~L~~~k 90 (363)
+.--.++|+.| .-|..+||.+ .++.++++.+..++
T Consensus 17 ~~~ea~rC~~c~~~pC~~aCP~~----~dip~~i~~i~~g~ 53 (111)
T PF14691_consen 17 AIEEASRCLQCEDPPCQAACPAH----IDIPEYIRLIREGN 53 (111)
T ss_dssp HHHHHHHS---TT-HHHHTSTT-------HHHHHHHHHCT-
T ss_pred HHHHHhhccCCCCCCcccCCCCC----CcHHHHHHHHHCCC
Confidence 33445789999 6899999988 67778888888775
No 260
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=36.22 E-value=16 Score=41.89 Aligned_cols=18 Identities=22% Similarity=0.661 Sum_probs=16.3
Q ss_pred CCccc----CCccccccccccc
Q 017974 57 KDCLA----CSGCITSAETVML 74 (363)
Q Consensus 57 ~dCi~----Cg~Cit~c~~~~i 74 (363)
++|++ ||.|+.+||.+++
T Consensus 881 ~rC~~c~~~Cg~Cv~vCP~~Ai 902 (1012)
T TIGR03315 881 QRCLECSYVCEKCVDVCPNRAN 902 (1012)
T ss_pred ccccCCCCCCCChhhhCChhhh
Confidence 79996 9999999999964
No 261
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=36.20 E-value=9.7 Score=42.13 Aligned_cols=21 Identities=14% Similarity=0.480 Sum_probs=18.2
Q ss_pred eeccCCcccCCcccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~ 73 (363)
......|+.||.|..+||+++
T Consensus 438 ~~l~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 438 EDLYDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred hhhhhhccchhHHhhhCCCCC
Confidence 455689999999999999984
No 262
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=35.95 E-value=20 Score=34.99 Aligned_cols=22 Identities=18% Similarity=0.584 Sum_probs=18.6
Q ss_pred eccCCcccCCc--ccccccc-cccc
Q 017974 54 ISLKDCLACSG--CITSAET-VMLE 75 (363)
Q Consensus 54 I~~~dCi~Cg~--Cit~c~~-~~i~ 75 (363)
+....|.+|+. |+++||+ +++.
T Consensus 88 ~~~~~C~hC~~p~Cv~aCP~~gA~~ 112 (283)
T TIGR01582 88 IRKDGCMHCREPGCLKACPAPGAII 112 (283)
T ss_pred ECCccCCCCCCccccCCCCcCCeEE
Confidence 56788999998 9999997 6654
No 263
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=35.93 E-value=49 Score=30.40 Aligned_cols=50 Identities=24% Similarity=0.468 Sum_probs=36.0
Q ss_pred cHHHHHHhhcCCCeEEEEeCcchhhHHhhHhCCChHHHHHHHHHHHHHcCCeEEEec
Q 017974 78 SLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDT 134 (363)
Q Consensus 78 ~~~~~~~~L~~~k~~V~sisP~~~~sl~~~f~~~~~~~~~~l~~~Lk~LGf~~V~Dt 134 (363)
.+.+|++.|+..|. |.+. -|+++||+...++..+|..++..=-.+.|+|-
T Consensus 100 lL~~Fi~yIK~~Kv--v~le-----dla~~f~l~t~~~i~ri~~L~~~g~ltGv~Dd 149 (188)
T PF09756_consen 100 LLQEFINYIKEHKV--VNLE-----DLAAEFGLRTQDVINRIQELEAEGRLTGVIDD 149 (188)
T ss_dssp HHHHHHHHHHH-SE--E-HH-----HHHHHH-S-HHHHHHHHHHHHHHSSS-EEE-T
T ss_pred HHHHHHHHHHHcce--eeHH-----HHHHHcCCCHHHHHHHHHHHHHCCCceeeEcC
Confidence 47789999998664 4455 49999999998888999988888777888886
No 264
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=34.57 E-value=12 Score=37.97 Aligned_cols=16 Identities=31% Similarity=1.032 Sum_probs=14.6
Q ss_pred CcccCCcccccccccc
Q 017974 58 DCLACSGCITSAETVM 73 (363)
Q Consensus 58 dCi~Cg~Cit~c~~~~ 73 (363)
+||.|+.|+.+|+...
T Consensus 246 ~CI~C~~CidaCd~~~ 261 (386)
T COG0348 246 ECIGCGRCIDACDDDM 261 (386)
T ss_pred ccccHhhHhhhCCHHh
Confidence 6999999999999874
No 265
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=34.42 E-value=14 Score=36.61 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=17.7
Q ss_pred eccCCcccCCccccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~i 74 (363)
-....|+.||-|..+||+-..
T Consensus 6 ~~~~~Cv~Cg~C~~~CP~~~~ 26 (388)
T COG0247 6 ESLDKCVHCGFCTNVCPSYRA 26 (388)
T ss_pred HHHHhcCCCCcccCcCCCccc
Confidence 356789999999999999744
No 266
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=34.32 E-value=28 Score=30.79 Aligned_cols=62 Identities=19% Similarity=0.392 Sum_probs=39.0
Q ss_pred CeEEEEeCcchhhHHh-hHhCCChHHHHHHHHHHHHHcCCeEEEechhHHHHHHHHHHHHHHHHH
Q 017974 90 KAVIISLSPQSRASLA-EHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARY 153 (363)
Q Consensus 90 k~~V~sisP~~~~sl~-~~f~~~~~~~~~~l~~~Lk~LGf~~V~Dta~~adi~~~e~~~ef~~~~ 153 (363)
+.+|++..|..+..+. ...... -.+.++=...|+++|+++|+-.-+..++.-++ +++|++.+
T Consensus 38 ~~~v~tF~~~P~~~~~~~~~~~~-l~s~~ek~~~l~~~Gvd~~~~~~F~~~~~~ls-~~~Fi~~i 100 (157)
T PF06574_consen 38 KSVVLTFDPHPKEVLNPDKPPKL-LTSLEEKLELLESLGVDYVIVIPFTEEFANLS-PEDFIEKI 100 (157)
T ss_dssp EEEEEEESS-CHHHHSCTCCGGB-SS-HHHHHHHHHHTTESEEEEE-CCCHHCCS--HHHHHHHH
T ss_pred ceEEEEcccCHHHHhcCCCcccC-CCCHHHHHHHHHHcCCCEEEEecchHHHHcCC-HHHHHHHH
Confidence 5778888886655554 111111 12345666889999999998888776665444 78899874
No 267
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=32.42 E-value=18 Score=41.34 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=18.7
Q ss_pred eeccCCcccC----Cccccccccccc
Q 017974 53 KISLKDCLAC----SGCITSAETVML 74 (363)
Q Consensus 53 ~I~~~dCi~C----g~Cit~c~~~~i 74 (363)
.-..++|++| |.|+.+||..|+
T Consensus 882 ~~~~~rC~~C~~~C~~C~~vCP~~A~ 907 (1019)
T PRK09853 882 AQEAARCLECNYVCEKCVDVCPNRAN 907 (1019)
T ss_pred cccccccCCcccccchhhhhCCcccc
Confidence 3456799999 999999999983
No 268
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.01 E-value=3.9e+02 Score=25.09 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=79.5
Q ss_pred HHHHHhhcCCCeEEEEeCcchhhHHhhHhCCChHHHHHHHHHHHHHcCCeEEEechhHHHHHHHHHHHHHHHHHhhhccC
Q 017974 80 DEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQES 159 (363)
Q Consensus 80 ~~~~~~L~~~k~~V~sisP~~~~sl~~~f~~~~~~~~~~l~~~Lk~LGf~~V~Dta~~adi~~~e~~~ef~~~~~~~~~~ 159 (363)
.++++.|.+.+.+ +++-- .+. +....+..+|.+-|++ ++|+++-..-. .+-+++++
T Consensus 6 ~~~~~~l~~~~vi-~Vvr~-----------~~~-~~a~~~~~al~~gGi~-~iEiT~~tp~a-----~~~i~~l~----- 61 (222)
T PRK07114 6 IAVLTAMKATGMV-PVFYH-----------ADV-EVAKKVIKACYDGGAR-VFEFTNRGDFA-----HEVFAELV----- 61 (222)
T ss_pred HHHHHHHHhCCEE-EEEEc-----------CCH-HHHHHHHHHHHHCCCC-EEEEeCCCCcH-----HHHHHHHH-----
Confidence 4567777765543 33322 122 3456889999999997 77887722111 11111111
Q ss_pred cccccCCCCCceecCChhHHHHHHhhcCCCccCCCCCCCCHHHHHHHHHHHHHhHhhCCCCCCeEEEEEEeccchhh-hh
Q 017974 160 DDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL-EA 238 (363)
Q Consensus 160 ~~~~~~~~~PlisS~CPg~V~yiEk~~~p~Li~~Ls~v~SP~~i~g~liK~~~~~~~~~~~~~i~~V~I~PC~aKK~-Ea 238 (363)
.+..+.| |+++==.-+|.+|.|+...+- .| -.+.++|++++.. +.
T Consensus 62 --------------------~~~~~~~-p~~~vGaGTVl~~e~a~~a~~-------aG------A~FiVsP~~~~~v~~~ 107 (222)
T PRK07114 62 --------------------KYAAKEL-PGMILGVGSIVDAATAALYIQ-------LG------ANFIVTPLFNPDIAKV 107 (222)
T ss_pred --------------------HHHHhhC-CCeEEeeEeCcCHHHHHHHHH-------cC------CCEEECCCCCHHHHHH
Confidence 1122356 777777789999999866431 11 1277999999887 44
Q ss_pred hhhhhhhccccchhccccCCCCCCCceEEECHHHHHHHHHhcCCCC
Q 017974 239 AREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 284 (363)
Q Consensus 239 ~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLT~~El~~~l~~~~i~l 284 (363)
.+.. +...+=.++|..|+.+-++. |.++
T Consensus 108 ~~~~-----------------~i~~iPG~~TpsEi~~A~~~-Ga~~ 135 (222)
T PRK07114 108 CNRR-----------------KVPYSPGCGSLSEIGYAEEL-GCEI 135 (222)
T ss_pred HHHc-----------------CCCEeCCCCCHHHHHHHHHC-CCCE
Confidence 4321 35678889999999988876 4544
No 269
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=29.41 E-value=34 Score=35.37 Aligned_cols=41 Identities=17% Similarity=0.367 Sum_probs=28.1
Q ss_pred CCceeeccCCcccCCc--cccccccc--------ccccccHHHHHHhhcCC
Q 017974 49 AEPVKISLKDCLACSG--CITSAETV--------MLEKQSLDEFLSNINKG 89 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~--Cit~c~~~--------~i~~~~~~~~~~~L~~~ 89 (363)
...+.-..++|+.|+. |+..||.+ ++.+.++.+-++.+...
T Consensus 36 ~~~~~~~a~rc~~c~~~~C~~~CP~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (471)
T PRK12810 36 EEQAKIQAARCMDCGIPFCHWGCPVHNYIPEWNDLVYRGRWEEAAERLHQT 86 (471)
T ss_pred HHHHHHHHHhccCCCCCcccccCCCCCcHHHHHHHHHCCCHHHHHHHHHHh
Confidence 3466667789999987 89999987 23344555666655443
No 270
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=29.08 E-value=1e+02 Score=28.68 Aligned_cols=75 Identities=32% Similarity=0.412 Sum_probs=48.5
Q ss_pred eeeccCCc-ccCCcccccccc-----cccccccHHHHHHhhcC--CCeEEEEeCcchhhHHhhHhCCChH-HHHHHHHHH
Q 017974 52 VKISLKDC-LACSGCITSAET-----VMLEKQSLDEFLSNINK--GKAVIISLSPQSRASLAEHFGISPL-QVFKKLTTF 122 (363)
Q Consensus 52 a~I~~~dC-i~Cg~Cit~c~~-----~~i~~~~~~~~~~~L~~--~k~~V~sisP~~~~sl~~~f~~~~~-~~~~~l~~~ 122 (363)
+-|...-| +.|.+|-+..-. ..-...+.+++++.+++ .+..-|+++= |.|.. .....|...
T Consensus 25 vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~~~~~~V~lTG----------GEP~~~~~l~~Ll~~ 94 (212)
T COG0602 25 VFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLGYKARGVSLTG----------GEPLLQPNLLELLEL 94 (212)
T ss_pred EEEEcCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcCCCcceEEEeC----------CcCCCcccHHHHHHH
Confidence 44555588 689999975211 12335678888888876 2333455553 33311 134688899
Q ss_pred HHHcCCeEEEechh
Q 017974 123 LKSLGVKSIFDTSC 136 (363)
Q Consensus 123 Lk~LGf~~V~Dta~ 136 (363)
|++.||+...+|+-
T Consensus 95 l~~~g~~~~lETng 108 (212)
T COG0602 95 LKRLGFRIALETNG 108 (212)
T ss_pred HHhCCceEEecCCC
Confidence 99999999999853
No 271
>PF12225 MTHFR_C: Methylene-tetrahydrofolate reductase C terminal; InterPro: IPR022026 This family is found in bacteria and archaea, and is approximately 100 amino acids in length. There is a conserved NGPCGG sequence motif. This family is the C-terminal of methylene-tetrahydrofolate reductase. This protein reduces FAD using the reducing equivalents from reduced FAD, subsequently reduces tetrahydrofolate. The C-terminal of MTHFR contains the FAD binding site and is the catalytic portion of the enzyme.
Probab=28.93 E-value=25 Score=28.97 Aligned_cols=18 Identities=39% Similarity=0.901 Sum_probs=15.1
Q ss_pred CceeeccCCcccCCcccc
Q 017974 50 EPVKISLKDCLACSGCIT 67 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg~Cit 67 (363)
....+.+++|-+||+|+-
T Consensus 14 ~~~~~~~~~C~~CG~C~L 31 (97)
T PF12225_consen 14 REVKVFLERCRACGDCVL 31 (97)
T ss_pred eeccchhccCCCCCCccc
Confidence 356778899999999986
No 272
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=27.88 E-value=36 Score=35.24 Aligned_cols=33 Identities=15% Similarity=0.362 Sum_probs=23.5
Q ss_pred ceeeccCCcccCCcccccccccccccccHHHHHHhhc
Q 017974 51 PVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN 87 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~i~~~~~~~~~~~L~ 87 (363)
.+.=....|..||.|-.+||..+ .+.+++..|+
T Consensus 352 ~~~~~~~~c~lcg~C~evCPv~I----pl~eli~~lR 384 (459)
T COG1139 352 AAGDLPYACSLCGACTEVCPVKI----PLPELIRKLR 384 (459)
T ss_pred hccccchhhccccCCCCcCCCCC----CHHHHHHHHH
Confidence 44456788999999999999773 3444555554
No 273
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=27.83 E-value=8.4 Score=27.87 Aligned_cols=14 Identities=14% Similarity=0.354 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcCCe
Q 017974 116 FKKLTTFLKSLGVK 129 (363)
Q Consensus 116 ~~~l~~~Lk~LGf~ 129 (363)
+++|..+++++||+
T Consensus 49 ~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 49 IEKIIEAIEKAGYE 62 (62)
T ss_dssp HHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHhCcC
Confidence 58999999999995
No 274
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=27.34 E-value=1.5e+02 Score=29.50 Aligned_cols=54 Identities=31% Similarity=0.644 Sum_probs=37.2
Q ss_pred cccccccHHHHHHhh----cCCCeEEE--EeCcchhhHHhhHhCCChHHHHHHHHHHHHHcCCeEEEechh
Q 017974 72 VMLEKQSLDEFLSNI----NKGKAVII--SLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSC 136 (363)
Q Consensus 72 ~~i~~~~~~~~~~~L----~~~k~~V~--sisP~~~~sl~~~f~~~~~~~~~~l~~~Lk~LGf~~V~Dta~ 136 (363)
..|+.+..+++++.+ ++...+|+ |++| |++. +.+.+|...+++.|...++|++=
T Consensus 109 p~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~----------g~~~-d~y~~li~~~~~~g~~vilD~Sg 168 (310)
T COG1105 109 PEISEAELEQFLEQLKALLESDDIVVLSGSLPP----------GVPP-DAYAELIRILRQQGAKVILDTSG 168 (310)
T ss_pred CCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCC----------CCCH-HHHHHHHHHHHhcCCeEEEECCh
Confidence 345666666666554 44566555 4555 3443 56789999999999999999984
No 275
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=26.88 E-value=33 Score=30.59 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=31.9
Q ss_pred cccccccccccccccHHHHHHhhcCC----CeEEEEeCcchhhHHhhHhCCChHHHHHHHHHHHHHcCCeEE
Q 017974 64 GCITSAETVMLEKQSLDEFLSNINKG----KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSI 131 (363)
Q Consensus 64 ~Cit~c~~~~i~~~~~~~~~~~L~~~----k~~V~sisP~~~~sl~~~f~~~~~~~~~~l~~~Lk~LGf~~V 131 (363)
.|-.+||..+ ..+.++.+.|.+. ..+.+++.|. .++++.|..+.+++|-+..
T Consensus 63 ~CpdvCp~~l---~~l~~~~~~l~~~~~~v~~v~ISvDP~-------------~DTp~~L~~Y~~~~~~~~~ 118 (174)
T PF02630_consen 63 RCPDVCPTTL---ANLSQLQKQLGEEGKDVQFVFISVDPE-------------RDTPEVLKKYAKKFGPDFI 118 (174)
T ss_dssp TSSSHHHHHH---HHHHHHHHHHHHTTTTEEEEEEESSTT-------------TC-HHHHHHHHHCHTTTCE
T ss_pred CCCccCHHHH---HHHHHHHHHhhhccCceEEEEEEeCCC-------------CCCHHHHHHHHHhcCCCcc
Confidence 3457899775 4455555555432 3555677772 3567888888887765543
No 276
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=26.18 E-value=31 Score=40.06 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=19.6
Q ss_pred CCceeeccCCcccCCcccc-ccccc
Q 017974 49 AEPVKISLKDCLACSGCIT-SAETV 72 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit-~c~~~ 72 (363)
+.|+.|+.+.|..|+-|+. .||.-
T Consensus 654 grK~~Id~s~Cn~~~~C~~G~CPsf 678 (1159)
T PRK13030 654 GRKRRIDQSSCNKDFSCVNGFCPSF 678 (1159)
T ss_pred CccEEECHHHCCCccccccCCCCCC
Confidence 3478888888999999988 88864
No 277
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=26.01 E-value=1.2e+02 Score=26.05 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=31.4
Q ss_pred ccHHHHHHhhcCCCeEEEEeCcchhhHHhhHhCCChHH---HHHHHHHHHHHcCCeEEEech
Q 017974 77 QSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ---VFKKLTTFLKSLGVKSIFDTS 135 (363)
Q Consensus 77 ~~~~~~~~~L~~~k~~V~sisP~~~~sl~~~f~~~~~~---~~~~l~~~Lk~LGf~~V~Dta 135 (363)
.+.+-+|+.+++...-|..|.|.+---.+.+-|++... ...+|...+++-|| .|.|.+
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf-~v~D~s 96 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGF-NVADFS 96 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT---EEE-T
T ss_pred HHHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-EEEecc
Confidence 45666777776654333333333434456666776432 23799999999999 899986
No 278
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=24.75 E-value=39 Score=37.15 Aligned_cols=22 Identities=27% Similarity=0.679 Sum_probs=17.6
Q ss_pred ceeeccCCcccCC--ccccccccc
Q 017974 51 PVKISLKDCLACS--GCITSAETV 72 (363)
Q Consensus 51 ka~I~~~dCi~Cg--~Cit~c~~~ 72 (363)
.|.---++|+.|+ .|+..||.+
T Consensus 323 ~a~~ea~rC~~c~~~~C~~~Cp~~ 346 (752)
T PRK12778 323 QAMTEAKRCLDCKNPGCVEGCPVG 346 (752)
T ss_pred HHHHHHHHhhcCCCCcccccCcCC
Confidence 4555568999998 589999987
No 279
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=24.69 E-value=40 Score=34.58 Aligned_cols=17 Identities=29% Similarity=0.768 Sum_probs=15.1
Q ss_pred cCCcccCC----ccccccccc
Q 017974 56 LKDCLACS----GCITSAETV 72 (363)
Q Consensus 56 ~~dCi~Cg----~Cit~c~~~ 72 (363)
-++|+.|. -|...||.+
T Consensus 25 a~rc~~c~~~~~~C~~~CP~~ 45 (449)
T TIGR01316 25 AQRCLNCKDATKPCIKGCPVH 45 (449)
T ss_pred HhhCcCccCCCCChhhhCCCC
Confidence 38899998 699999997
No 280
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=24.47 E-value=27 Score=35.44 Aligned_cols=18 Identities=17% Similarity=0.464 Sum_probs=16.0
Q ss_pred ccCCcccCCccccccccc
Q 017974 55 SLKDCLACSGCITSAETV 72 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~ 72 (363)
..+.|-+||.|-+.||..
T Consensus 46 la~lChnC~~C~~~CPy~ 63 (372)
T TIGR02484 46 LAHLCHDCQSCWHDCQYA 63 (372)
T ss_pred HHHHCcCcccccccCcCC
Confidence 468899999999999984
No 281
>PRK12831 putative oxidoreductase; Provisional
Probab=23.35 E-value=47 Score=34.35 Aligned_cols=38 Identities=21% Similarity=0.422 Sum_probs=25.6
Q ss_pred ceeeccCCcccCC--ccccccccc--------ccccccHHHHHHhhcC
Q 017974 51 PVKISLKDCLACS--GCITSAETV--------MLEKQSLDEFLSNINK 88 (363)
Q Consensus 51 ka~I~~~dCi~Cg--~Cit~c~~~--------~i~~~~~~~~~~~L~~ 88 (363)
.+.---++|+.|+ -|...||.+ ++...++.+-++.|.+
T Consensus 34 ~~~~ea~rc~~c~~~~C~~~CP~~~~i~~~~~~~~~~~~~~a~~~~~~ 81 (464)
T PRK12831 34 EAVKEASRCLQCKKPKCVKGCPVSINIPGFISKLKEGDFEEAAKIIAK 81 (464)
T ss_pred HHHHHHHhhcCCCCCchhhhCCCCCCHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444568999998 599999997 3334455555555544
No 282
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=22.90 E-value=27 Score=36.99 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=21.1
Q ss_pred CceeeccCCcccC------Cccccccccccccc
Q 017974 50 EPVKISLKDCLAC------SGCITSAETVMLEK 76 (363)
Q Consensus 50 ~ka~I~~~dCi~C------g~Cit~c~~~~i~~ 76 (363)
..+....++|+.| +.|+.+||.+++..
T Consensus 497 ~~~~~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~ 529 (564)
T PRK12771 497 EEARQEAARCLSCGNCFECDNCYGACPQDAIIK 529 (564)
T ss_pred hhhhhhcccCcccccccccchhhhhCChhheee
Confidence 3466778888888 78999999987653
No 283
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=22.70 E-value=50 Score=29.14 Aligned_cols=37 Identities=32% Similarity=0.490 Sum_probs=20.8
Q ss_pred CCeEEEEeCcchhhHHhhHhCCChHHHHHHHHHHHHHcCCe
Q 017974 89 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVK 129 (363)
Q Consensus 89 ~k~~V~sisP~~~~sl~~~f~~~~~~~~~~l~~~Lk~LGf~ 129 (363)
++.+-+++||+ ++...+++.. .....+..||+++||+
T Consensus 118 GRiLtaslSPs---~~iHk~~ie~-~v~~E~~~AL~RiG~k 154 (154)
T PF11576_consen 118 GRILTASLSPS---HVIHKKSIED-AVKKEMIEALKRIGIK 154 (154)
T ss_dssp S-EEEEEEE-----TTTS---HHH-HHHHHHHHHHHTTT--
T ss_pred CcEEeeccCch---hhhccccHHH-HHHHHHHHHHHHhCCC
Confidence 47888999997 4555555332 2237899999999995
No 284
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=22.44 E-value=2e+02 Score=25.11 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=46.9
Q ss_pred CCCceeeccCCc-ccCCcccccc--cccccccccHHHHHHhhcCCCe--EEEEeCcchhhHHhhHhCCChHHHHHHHHHH
Q 017974 48 QAEPVKISLKDC-LACSGCITSA--ETVMLEKQSLDEFLSNINKGKA--VIISLSPQSRASLAEHFGISPLQVFKKLTTF 122 (363)
Q Consensus 48 ~~~ka~I~~~dC-i~Cg~Cit~c--~~~~i~~~~~~~~~~~L~~~k~--~V~sisP~~~~sl~~~f~~~~~~~~~~l~~~ 122 (363)
..=.+.|-...| +.|..|-+.. +...-..-+.+++++.|.+... --|+++= +. +.. +....+...
T Consensus 14 ~~~~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~~~~~gVt~SG-------GE--l~~-~~l~~ll~~ 83 (147)
T TIGR02826 14 NEYSLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYRSLISCVLFLG-------GE--WNR-EALLSLLKI 83 (147)
T ss_pred CCEEEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhCCCCCEEEEec-------hh--cCH-HHHHHHHHH
Confidence 334677888889 8999998742 1110113455666666654321 1233332 22 222 234678888
Q ss_pred HHHcCCeEEEechh
Q 017974 123 LKSLGVKSIFDTSC 136 (363)
Q Consensus 123 Lk~LGf~~V~Dta~ 136 (363)
+|++|++...+|+.
T Consensus 84 lk~~Gl~i~l~Tg~ 97 (147)
T TIGR02826 84 FKEKGLKTCLYTGL 97 (147)
T ss_pred HHHCCCCEEEECCC
Confidence 89999998899974
No 285
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=21.65 E-value=42 Score=32.69 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=14.6
Q ss_pred CCcc-cCCcccccccccc
Q 017974 57 KDCL-ACSGCITSAETVM 73 (363)
Q Consensus 57 ~dCi-~Cg~Cit~c~~~~ 73 (363)
..|+ .|+.|..+||.+.
T Consensus 208 ~~~~~gCd~Cq~vCP~n~ 225 (282)
T TIGR00276 208 GGRSYGCDICQEVCPWNK 225 (282)
T ss_pred cCcccCCCCccccCCCCC
Confidence 4687 6999999999985
No 286
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=21.45 E-value=35 Score=36.64 Aligned_cols=19 Identities=37% Similarity=0.331 Sum_probs=11.2
Q ss_pred cCCCCCCCCHHHHHHHHHH
Q 017974 191 LPYISSVKSPQQTIGATIK 209 (363)
Q Consensus 191 i~~Ls~v~SP~~i~g~liK 209 (363)
+-|.-+..|-..|+|.-+|
T Consensus 566 LvntGsCvSnaHi~GAaIK 584 (772)
T COG1152 566 LVNTGSCVSNAHIAGAAIK 584 (772)
T ss_pred eeeccchhhhhhhhhhHHH
Confidence 3345555666666666665
No 287
>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]
Probab=21.32 E-value=50 Score=31.54 Aligned_cols=15 Identities=27% Similarity=0.652 Sum_probs=12.0
Q ss_pred CCCCceecCChhHHH
Q 017974 166 SSLPMLSSACPGWIC 180 (363)
Q Consensus 166 ~~~PlisS~CPg~V~ 180 (363)
+..-+.+|.|||||+
T Consensus 191 ~~~ilv~sihPGwV~ 205 (249)
T KOG1611|consen 191 DDHILVVSIHPGWVQ 205 (249)
T ss_pred CCcEEEEEecCCeEE
Confidence 345677999999997
No 288
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=21.05 E-value=46 Score=38.76 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=21.2
Q ss_pred CCceeeccCCcccCCcccc-ccccc
Q 017974 49 AEPVKISLKDCLACSGCIT-SAETV 72 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit-~c~~~ 72 (363)
+.|.+|+.+.|..|+-|+. .||.-
T Consensus 668 grK~~Idqs~Cn~d~sC~~G~CPsF 692 (1165)
T PRK09193 668 GRKRRIDQSSCNKDFSCLKGFCPSF 692 (1165)
T ss_pred CccEEECHhHCCCccccccCCCCCc
Confidence 4579999999999999999 99975
No 289
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=20.08 E-value=41 Score=36.21 Aligned_cols=18 Identities=17% Similarity=0.715 Sum_probs=15.7
Q ss_pred cCCcccCCcccccccccc
Q 017974 56 LKDCLACSGCITSAETVM 73 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~~ 73 (363)
..+|..||.|..+||..+
T Consensus 399 a~kc~~cG~C~~~CP~~l 416 (772)
T COG1152 399 ARKCTYCGNCMRACPNEL 416 (772)
T ss_pred HHhcccccchhccCCccc
Confidence 378999999999999763
Done!