Query 017974
Match_columns 363
No_of_seqs 122 out of 1276
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 07:54:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lx4_A Fe-hydrogenase; HYDA, H 100.0 2.4E-65 8.2E-70 513.5 25.8 269 69-353 18-294 (457)
2 3c8y_A Iron hydrogenase 1; dit 100.0 4.3E-61 1.5E-65 501.4 21.4 277 51-354 182-462 (574)
3 1hfe_L Protein (Fe-only hydrog 100.0 1.9E-58 6.5E-63 465.3 24.4 293 38-355 44-342 (421)
4 1q16_B Respiratory nitrate red 99.9 8.3E-29 2.8E-33 253.2 -11.8 199 38-283 195-450 (512)
5 1ti6_B Pyrogallol hydroxytrans 97.4 3.1E-06 1E-10 80.3 -6.2 108 38-146 79-213 (274)
6 1kqf_B FDH-N beta S, formate d 97.2 3.8E-05 1.3E-09 73.4 -0.6 47 91-141 223-275 (294)
7 1bc6_A 7-Fe ferredoxin; electr 96.6 0.0014 4.8E-08 49.1 3.5 53 34-87 15-69 (77)
8 2ivf_B Ethylbenzene dehydrogen 96.5 0.0025 8.5E-08 62.4 5.6 27 101-127 295-321 (352)
9 7fd1_A FD1, protein (7-Fe ferr 96.1 0.0031 1.1E-07 50.3 2.9 37 39-76 20-56 (106)
10 1h98_A Ferredoxin; electron tr 95.7 0.004 1.4E-07 46.8 1.9 37 39-76 20-56 (78)
11 2fdn_A Ferredoxin; electron tr 95.7 0.0042 1.4E-07 43.3 1.9 37 38-75 17-53 (55)
12 2v2k_A Ferredoxin; iron, trans 95.4 0.0075 2.5E-07 47.8 2.8 37 39-76 20-56 (105)
13 1rgv_A Ferredoxin; electron tr 95.4 0.012 4.1E-07 44.2 3.7 51 35-86 14-75 (80)
14 3eun_A Ferredoxin; electron tr 95.2 0.0079 2.7E-07 45.6 2.2 49 37-86 16-75 (82)
15 2vpz_B NRFC protein; oxidoredu 95.1 0.01 3.4E-07 53.1 2.7 43 34-76 65-107 (195)
16 2fgo_A Ferredoxin; allochromat 94.9 0.014 4.9E-07 44.0 2.9 49 37-86 16-75 (82)
17 3eun_A Ferredoxin; electron tr 94.8 0.011 3.8E-07 44.8 2.0 25 52-76 1-25 (82)
18 3or1_B Sulfite reductase beta; 94.8 0.0069 2.4E-07 59.9 0.9 38 39-76 231-275 (386)
19 2zvs_A Uncharacterized ferredo 94.7 0.012 4.2E-07 44.9 1.9 24 53-76 2-25 (85)
20 1rgv_A Ferredoxin; electron tr 94.6 0.011 3.9E-07 44.4 1.7 24 53-76 2-25 (80)
21 2fdn_A Ferredoxin; electron tr 94.6 0.017 5.8E-07 40.1 2.3 25 52-77 2-26 (55)
22 3mm5_B Sulfite reductase, diss 94.5 0.0084 2.9E-07 58.8 0.9 38 38-75 219-257 (366)
23 2fgo_A Ferredoxin; allochromat 94.5 0.013 4.6E-07 44.2 1.8 24 53-76 2-25 (82)
24 1dax_A Ferredoxin I; electron 94.5 0.01 3.5E-07 42.4 1.0 24 51-75 3-26 (64)
25 3j16_B RLI1P; ribosome recycli 94.3 0.011 3.6E-07 61.9 1.2 32 47-78 43-74 (608)
26 2zvs_A Uncharacterized ferredo 94.3 0.022 7.5E-07 43.4 2.7 41 35-76 14-61 (85)
27 1xer_A Ferredoxin; electron tr 94.2 0.014 4.6E-07 45.9 1.2 29 48-76 34-62 (103)
28 3mm5_A Sulfite reductase, diss 94.0 0.017 5.9E-07 57.7 1.9 38 37-75 265-302 (418)
29 1iqz_A Ferredoxin; iron-sulfer 93.9 0.015 5E-07 43.9 0.9 23 51-74 3-25 (81)
30 1jb0_C Photosystem I iron-sulf 93.9 0.014 4.7E-07 43.5 0.7 25 51-75 2-26 (80)
31 1rof_A Ferredoxin; electron tr 93.9 0.02 7E-07 39.8 1.6 27 49-75 29-57 (60)
32 1kqf_B FDH-N beta S, formate d 93.7 0.017 5.8E-07 54.9 1.2 38 39-76 112-150 (294)
33 1rof_A Ferredoxin; electron tr 93.7 0.027 9.2E-07 39.2 1.9 22 51-72 2-23 (60)
34 1f2g_A Ferredoxin II; electron 93.6 0.016 5.4E-07 40.5 0.6 21 51-72 1-21 (58)
35 1jnr_B Adenylylsulfate reducta 93.6 0.011 3.7E-07 50.7 -0.4 41 38-78 24-66 (150)
36 1dwl_A Ferredoxin I; electron 93.5 0.033 1.1E-06 38.6 2.2 28 48-75 28-57 (59)
37 1dax_A Ferredoxin I; electron 93.4 0.014 4.7E-07 41.7 -0.1 27 50-76 32-61 (64)
38 3gyx_B Adenylylsulfate reducta 93.3 0.018 6.3E-07 50.1 0.6 41 38-78 23-65 (166)
39 1dwl_A Ferredoxin I; electron 93.1 0.041 1.4E-06 38.1 2.0 21 51-71 1-21 (59)
40 1f2g_A Ferredoxin II; electron 93.0 0.024 8.1E-07 39.5 0.6 24 52-75 31-56 (58)
41 1sj1_A Ferredoxin; thermostabi 93.0 0.024 8.4E-07 40.2 0.7 24 51-75 3-26 (66)
42 3i9v_9 NADH-quinone oxidoreduc 92.7 0.027 9.2E-07 48.6 0.8 27 51-77 90-116 (182)
43 1xer_A Ferredoxin; electron tr 92.7 0.021 7.2E-07 44.8 -0.0 25 52-76 76-100 (103)
44 3or1_A Sulfite reductase alpha 92.6 0.031 1.1E-06 56.1 1.1 37 37-74 282-318 (437)
45 1bc6_A 7-Fe ferredoxin; electr 92.6 0.049 1.7E-06 40.5 1.9 25 52-76 1-27 (77)
46 1jb0_C Photosystem I iron-sulf 91.6 0.031 1.1E-06 41.5 -0.2 22 54-75 42-63 (80)
47 7fd1_A FD1, protein (7-Fe ferr 90.8 0.052 1.8E-06 43.0 0.4 25 53-77 2-28 (106)
48 3i9v_9 NADH-quinone oxidoreduc 90.3 0.058 2E-06 46.5 0.3 21 55-75 49-69 (182)
49 1h98_A Ferredoxin; electron tr 90.1 0.066 2.3E-06 39.9 0.4 25 53-77 2-28 (78)
50 3gyx_B Adenylylsulfate reducta 89.9 0.082 2.8E-06 45.9 0.9 26 51-76 1-31 (166)
51 1iqz_A Ferredoxin; iron-sulfer 89.7 0.045 1.5E-06 41.1 -0.8 21 56-76 48-68 (81)
52 1hfe_L Protein (Fe-only hydrog 89.5 0.099 3.4E-06 52.0 1.3 26 51-76 27-52 (421)
53 2gmh_A Electron transfer flavo 89.5 0.086 2.9E-06 54.4 0.9 37 39-75 528-569 (584)
54 3bk7_A ABC transporter ATP-bin 89.4 0.096 3.3E-06 54.6 1.1 29 48-76 58-86 (607)
55 2v2k_A Ferredoxin; iron, trans 88.9 0.089 3.1E-06 41.4 0.4 25 52-76 1-27 (105)
56 1h0h_B Formate dehydrogenase ( 88.6 0.077 2.6E-06 47.9 -0.2 37 41-77 89-128 (214)
57 1jnr_B Adenylylsulfate reducta 88.6 0.12 4E-06 44.1 0.9 26 51-76 2-32 (150)
58 2c42_A Pyruvate-ferredoxin oxi 85.2 0.17 5.8E-06 57.0 0.0 26 51-76 736-763 (1231)
59 2wdq_B Succinate dehydrogenase 83.5 0.29 9.8E-06 44.4 0.8 20 55-74 202-221 (238)
60 2c42_A Pyruvate-ferredoxin oxi 83.5 0.27 9.2E-06 55.3 0.7 26 51-76 680-705 (1231)
61 3i9v_3 NADH-quinone oxidoreduc 81.0 0.45 1.5E-05 50.9 1.3 21 58-78 219-239 (783)
62 2pa8_D DNA-directed RNA polyme 80.6 0.32 1.1E-05 45.3 -0.0 38 39-77 183-220 (265)
63 1sj1_A Ferredoxin; thermostabi 80.0 0.23 8E-06 34.9 -1.0 19 58-76 45-63 (66)
64 2wdq_B Succinate dehydrogenase 80.0 0.48 1.7E-05 42.9 0.9 21 54-74 144-164 (238)
65 1kf6_B Fumarate reductase iron 79.5 0.42 1.4E-05 43.4 0.4 19 55-73 200-218 (243)
66 3c8y_A Iron hydrogenase 1; dit 79.2 0.43 1.5E-05 49.3 0.3 24 48-71 136-159 (574)
67 1kf6_B Fumarate reductase iron 77.7 0.38 1.3E-05 43.8 -0.6 21 54-74 143-163 (243)
68 1gte_A Dihydropyrimidine dehyd 76.5 0.49 1.7E-05 52.1 -0.2 23 52-75 980-1003(1025)
69 1gte_A Dihydropyrimidine dehyd 76.1 0.68 2.3E-05 51.0 0.8 30 48-77 942-974 (1025)
70 2h88_B Succinate dehydrogenase 75.0 0.86 2.9E-05 41.8 1.1 21 54-74 153-173 (252)
71 1h0h_B Formate dehydrogenase ( 74.2 1.1 3.9E-05 40.1 1.7 29 55-83 133-170 (214)
72 2bs2_B Quinol-fumarate reducta 74.0 0.5 1.7E-05 42.9 -0.8 21 54-74 146-166 (241)
73 3i9v_3 NADH-quinone oxidoreduc 72.0 0.86 2.9E-05 48.7 0.3 21 51-71 173-193 (783)
74 2h88_B Succinate dehydrogenase 69.1 1.3 4.4E-05 40.6 0.8 19 55-73 211-229 (252)
75 2bs2_B Quinol-fumarate reducta 67.3 1.3 4.4E-05 40.2 0.4 20 54-73 203-222 (241)
76 3cf4_A Acetyl-COA decarboxylas 64.6 1.3 4.5E-05 47.6 -0.1 37 52-88 448-484 (807)
77 2vpz_B NRFC protein; oxidoredu 63.8 2 6.8E-05 37.9 0.9 27 51-77 50-78 (195)
78 2ivf_B Ethylbenzene dehydrogen 61.6 1.8 6.1E-05 42.1 0.2 27 51-77 143-171 (352)
79 3vr8_B Iron-sulfur subunit of 60.1 2.2 7.4E-05 40.2 0.5 18 56-73 179-196 (282)
80 1ti6_B Pyrogallol hydroxytrans 56.2 1.9 6.4E-05 40.3 -0.7 46 38-86 108-168 (274)
81 1wi9_A Protein C20ORF116 homol 55.9 13 0.00045 27.8 4.0 49 79-134 9-57 (72)
82 3vr8_B Iron-sulfur subunit of 47.8 5.9 0.0002 37.2 1.3 19 55-73 235-253 (282)
83 1q16_B Respiratory nitrate red 46.4 4.7 0.00016 41.1 0.3 27 50-76 175-203 (512)
84 3cf4_A Acetyl-COA decarboxylas 39.3 4.7 0.00016 43.4 -1.0 20 54-73 412-431 (807)
85 2vdc_G Glutamate synthase [NAD 33.1 10 0.00036 37.4 0.5 39 50-88 13-61 (456)
86 2kmz_A Tumor necrosis factor r 27.1 21 0.00074 24.6 1.1 20 49-68 12-31 (53)
87 3mm5_B Sulfite reductase, diss 22.1 8.8 0.0003 37.1 -2.3 28 50-77 198-228 (366)
88 3brc_A Conserved protein of un 21.1 39 0.0013 28.7 1.7 36 89-129 119-155 (156)
No 1
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster, insertion, biosynthesis, maturation, intermediate, evolution; 1.97A {Chlamydomonas reinhardtii}
Probab=100.00 E-value=2.4e-65 Score=513.53 Aligned_cols=269 Identities=30% Similarity=0.550 Sum_probs=235.4
Q ss_pred ccccccccccHHHHHHhhcCC------CeEEEEeCcchhhHHhhHhCCChHHH-HHHHHHHHHHcCCeEEEechhHHHHH
Q 017974 69 AETVMLEKQSLDEFLSNINKG------KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLT 141 (363)
Q Consensus 69 c~~~~i~~~~~~~~~~~L~~~------k~~V~sisP~~~~sl~~~f~~~~~~~-~~~l~~~Lk~LGf~~V~Dta~~adi~ 141 (363)
++..+.+.++++++++.|++. +++||+||||+|++|+++||++++.. +++|..+||+|||++||||++|||++
T Consensus 18 ~~~a~~~~~~~~~v~~aL~~~~~~~~~k~vVasvAPavrasl~~~FGl~~~~~t~gkl~~aLk~LGFd~VfDta~gADlt 97 (457)
T 3lx4_A 18 APAAEAPLSHVQQALAELAKPKDDPTRKHVCVQVAPAVRVAIAETLGLAPGATTPKQLAEGLRRLGFDEVFDTLFGADLT 97 (457)
T ss_dssp -------CCHHHHHHHHHHSCTTCTTCCEEEEEECHHHHHHGGGGGTCCTTCSCHHHHHHHHHHTTCSEEEETHHHHHHH
T ss_pred ccccccccchHHHHHHHHhCcCcccCCceEEEEECcHHHHHHHHHhCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence 344445578899999999875 69999999999999999999987654 79999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCcccccCCCCCceecCChhHHHHHHhhcCCCccCCCCCCCCHHHHHHHHHHHHHhHhhCCCCC
Q 017974 142 LIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221 (363)
Q Consensus 142 ~~e~~~ef~~~~~~~~~~~~~~~~~~~PlisS~CPg~V~yiEk~~~p~Li~~Ls~v~SP~~i~g~liK~~~~~~~~~~~~ 221 (363)
+.|+++||++|++++... ......++|||||||||||+||||+| |+|+||||+++|||||+|+++|++|++++|++|+
T Consensus 98 i~EEa~Ef~~r~~~~l~~-~~~~~~~lPmiTScCPgWV~yiEk~y-PeLlp~LSt~kSPqqm~G~liK~y~a~~~gi~p~ 175 (457)
T 3lx4_A 98 IMEEGSELLHRLTEHLEA-HPHSDEPLPMFTSCCPGWIAMLEKSY-PDLIPYVSSCKSPQMMLAAMVKSYLAEKKGIAPK 175 (457)
T ss_dssp HHHHHHHHHHHHHHHHCC------CCSSEECCCCHHHHHHHHHHC-GGGGGGBCCBCCHHHHHHHHHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHHHHhhhcc-ccccCCCCceEecCCHHHHHHHHHhC-cccccccCCCCCHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999999998532210 00024578999999999999999999 9999999999999999999999999999999999
Q ss_pred CeEEEEEEeccchhhhhhhhhhhhccccchhccccCCCCCCCceEEECHHHHHHHHHhcCCCCCCCCCCcccccCCCCCC
Q 017974 222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDD 301 (363)
Q Consensus 222 ~i~~V~I~PC~aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLT~~El~~~l~~~~i~l~~~~~~~~d~~~~~~s~ 301 (363)
+|++||||||+|||+||.|+++... ...+.++||+||||+||.+||++.|||+.++++.++|.+++..++
T Consensus 176 ~i~vV~ImPC~AKK~EA~R~e~~~~----------~~~g~~dVD~VLTtrEL~~mik~~gId~~~l~~~~~D~p~g~~sg 245 (457)
T 3lx4_A 176 DMVMVSIMPCTRKQSEADRDWFCVD----------ADPTLRQLDHVITTVELGNIFKERGINLAELPEGEWDNPMGVGSG 245 (457)
T ss_dssp GEEEEEEESCSSHHHHHTCTTCBCC-------------CCBSSCEEEEHHHHHHHHHHTTCCGGGSCCCCCCCTTSSSSS
T ss_pred cEEEEEEEcccchHHHhcCcccccc----------cccCCccccEEeeHHHHHHHHHHcCCChhhCCcccccccccccCC
Confidence 9999999999999999999987420 001357899999999999999999999999999999999998899
Q ss_pred CCccccCCCCcchHHHHHHHHHHHHhcCCccccccceeeeeCCC-eEEEEEEe
Q 017974 302 EGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353 (363)
Q Consensus 302 ~g~~~~~~~~SGG~~e~i~~~~~k~l~~~~i~~~l~~~~~rn~d-~~E~~l~~ 353 (363)
.|++|+. |||++++++|++++.++|.++. .++|+.+||.| ++|.++..
T Consensus 246 aG~iFg~---sGGV~EAv~r~a~~~~~g~~~~-~~~~~~vrg~~g~kea~v~~ 294 (457)
T 3lx4_A 246 AGVLFGT---TGGVMEAALRTAYELFTGTPLP-RLSLSEVRGMDGIKETNITM 294 (457)
T ss_dssp CSCCSSB---CCCHHHHHHHHHHHHHHSSCCC-CCCCEECTTCTTEEEEEEEE
T ss_pred CceecCC---cccHHHHHHHHHHHHhhCCCCc-cccceeecCCCCceEEEEEe
Confidence 9999988 9999999999999999999985 89999999976 99999887
No 2
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=100.00 E-value=4.3e-61 Score=501.39 Aligned_cols=277 Identities=32% Similarity=0.573 Sum_probs=255.1
Q ss_pred ceeeccCCcccCCcccccccccccc-cccHHHHHHhhc-CCCeEEEEeCcchhhHHhhHhCCChH-HHHHHHHHHHHHcC
Q 017974 51 PVKISLKDCLACSGCITSAETVMLE-KQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGISPL-QVFKKLTTFLKSLG 127 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~i~-~~~~~~~~~~L~-~~k~~V~sisP~~~~sl~~~f~~~~~-~~~~~l~~~Lk~LG 127 (363)
...|+.++|+.||.|+.+||+++|. ..+..++++.+. +++.++++++|++++++...|+.+++ ....+|..+||++|
T Consensus 182 ~~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~~~~~v~~~l~~~~~~~v~~~ap~v~~s~ge~f~~~~g~~~~~~l~~alk~lG 261 (574)
T 3c8y_A 182 EKCFDDTNCLLCGQCIIACPVAALSEKSHMDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLG 261 (574)
T ss_dssp GCCGGGSSCCCCCHHHHHCSSTTEEECCCHHHHHHHHHCTTCEEEEEECGGGGGTGGGGGTCCSSCCCHHHHHHHHHHHT
T ss_pred cceechhhCCcchhHHHhhccCCccccccHHHHHHhhccccceeEEeeCCceeeechhhhccccCchHHHHHHHHHHHcC
Confidence 3568899999999999999999887 456888999887 47899999999999999999998754 45799999999999
Q ss_pred CeEEEechhHHHHHHHHHHHHHHHHHhhhccCcccccCCCCCceecCChhHHHHHHhhcCCCccCCCCCCCCHHHHHHHH
Q 017974 128 VKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 207 (363)
Q Consensus 128 f~~V~Dta~~adi~~~e~~~ef~~~~~~~~~~~~~~~~~~~PlisS~CPg~V~yiEk~~~p~Li~~Ls~v~SP~~i~g~l 207 (363)
|++|+||++++|+++.|++.||++++++ ...+|||||||||||+||||+| |+|+||||+++|||+++|++
T Consensus 262 f~~v~dt~~~adl~~~ee~~e~ld~~~~---------~~~~p~itScCP~wv~~~e~~~-p~l~~~ls~~~SP~~~~g~~ 331 (574)
T 3c8y_A 262 FDKIFDINFGADMTIMEEATELVQRIEN---------NGPFPMFTSCCPGWVRQAENYY-PELLNNLSSAKSPQQIFGTA 331 (574)
T ss_dssp CSEEEEHHHHHHHHHHHHHHHHHHHHHH---------TCSCCEECCCCHHHHHHHHHHC-GGGGGGBCCBCCHHHHHHHH
T ss_pred CCEEeecccchhHHHHHHHHHHHHHHhh---------cCCceEEEecCHHHHHHHHHhc-hhhcCcCccCCCHHHHHHHH
Confidence 9999999999999999999999999864 5678999999999999999999 99999999999999999999
Q ss_pred HHHHHhHhhCCCCCCeEEEEEEeccchhhhhhhhhhhhccccchhccccCCCCCCCceEEECHHHHHHHHHhcCCCCCCC
Q 017974 208 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL 287 (363)
Q Consensus 208 iK~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLT~~El~~~l~~~~i~l~~~ 287 (363)
+|+++++++|++|++|++||||||+|||+||.|+++... +.++||+||||+||.+||++.+||+.++
T Consensus 332 ~K~~~~~~~~~~~~~i~~v~i~PC~aKK~Ea~r~~~~~~-------------~~~~vD~vlT~~El~~~~~~~~i~~~~l 398 (574)
T 3c8y_A 332 SKTYYPSISGLDPKNVFTVTVMPCTSKKFEADRPQMEKD-------------GLRDIDAVITTRELAKMIKDAKIPFAKL 398 (574)
T ss_dssp HTTHHHHTTCCCGGGEEEEEEESCSHHHHHHTCTTSEET-------------TEESCSEEEEHHHHHHHHHHTTCCGGGC
T ss_pred HHhhhHhhcCCCcCcEEEEEEeCCCcccccccccccccC-------------CCCccCEEEcHHHHHHHHHHcCCCcccC
Confidence 999999999999999999999999999999999987531 2468999999999999999999999999
Q ss_pred CCCcccccCCCCCCCCccccCCCCcchHHHHHHHHHHHHhcCCccccccceeeeeCC-CeEEEEEEec
Q 017974 288 EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVS 354 (363)
Q Consensus 288 ~~~~~d~~~~~~s~~g~~~~~~~~SGG~~e~i~~~~~k~l~~~~i~~~l~~~~~rn~-d~~E~~l~~~ 354 (363)
++.++|.+++..++.|++|+. |||++++++|++++.++|.+++ +++|+.+||. |++|+++..+
T Consensus 399 ~~~~~d~~~~~~s~~g~~f~~---sGGv~ea~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~e~~~~~~ 462 (574)
T 3c8y_A 399 EDSEADPAMGEYSGAGAIFGA---TGGVMEAALRSAKDFAENAELE-DIEYKQVRGLNGIKEAEVEIN 462 (574)
T ss_dssp CCCCCCGGGTCCCHHHHTTTS---TTHHHHHHHHHHHHHHHTCCCS-CCCCGGGCSSCSEEEEEEEET
T ss_pred CcccccccccccCcCcccccC---cccHHHHHHHHHHHHhcCCCCc-ccceeeecCCCCcEEEEEEeC
Confidence 999999988888888999987 9999999999999999999986 7999999985 6999999775
No 3
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=100.00 E-value=1.9e-58 Score=465.33 Aligned_cols=293 Identities=28% Similarity=0.514 Sum_probs=261.7
Q ss_pred CCCCccccccCCCceee-ccCCcccCCccccccccccccc-c-cHHHHHHhhcCC-CeEEEEeCcchhhHHhhHhCCChH
Q 017974 38 KPQVSTSSKQQAEPVKI-SLKDCLACSGCITSAETVMLEK-Q-SLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPL 113 (363)
Q Consensus 38 ~~~~~~~~~~~~~ka~I-~~~dCi~Cg~Cit~c~~~~i~~-~-~~~~~~~~L~~~-k~~V~sisP~~~~sl~~~f~~~~~ 113 (363)
.|+..++....+....| +.++|+.||+|+.+||+++|.. . ...++++.+++. +.+|++++|++++++.++|+.+++
T Consensus 44 ~CP~~ai~~~~~~~~~i~~~~~C~~Cg~C~~~CP~~Ai~~~~~~~~~v~~~l~d~~~~vv~~~ap~v~~slge~fg~~~g 123 (421)
T 1hfe_L 44 YCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAIYEAQSWVPEVEKKLKDGKVKCIAMPAPAVRYALGDAFGMPVG 123 (421)
T ss_dssp HCTTCCCBCCTTSCCBCCCGGGCCCCCTTGGGCTTCCEEESCCCHHHHHHHHHCTTCEEEEEECGGGGGTGGGGGTCCTT
T ss_pred hcCcCceecccccceeecChhhCCchhhHHHhhCcCCcccccccchhhhhhhcccccceeeecccceeehhHHHhCCCcc
Confidence 36777777444444556 8999999999999999999875 4 467777888775 578899999999999999998866
Q ss_pred HH-HHHHHHHHHHcCCeEEEechhHHHHHHHHHHHHHHHHHhhhccCcccccCCCCCceecCChhHHHHHHhhcCCCccC
Q 017974 114 QV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 192 (363)
Q Consensus 114 ~~-~~~l~~~Lk~LGf~~V~Dta~~adi~~~e~~~ef~~~~~~~~~~~~~~~~~~~PlisS~CPg~V~yiEk~~~p~Li~ 192 (363)
+. ..+|..+||++||++|+||++++|+++.|++.||+++++.. ....+|+|||||||||+|+|++| |++++
T Consensus 124 ~~~~~kl~~aLk~lGf~~v~dT~~~ad~~~~ee~~e~~~~~k~~-------~~~~~p~~Ts~CP~wv~~~e~~~-p~ll~ 195 (421)
T 1hfe_L 124 SVTTGKMLAALQKLGFAHCWDTEFTADVTIWEEGSEFVERLTKK-------SDMPLPQFTSCCPGWQKYAETYY-PELLP 195 (421)
T ss_dssp CCCHHHHHHHHHHHTCSEECCHHHHHHHHHHHHHHHHHHHHTTS-------SCSCSSEECCCCHHHHHHHHHHC-GGGGG
T ss_pred cccHHHHHHHHHhhcCCccccccccchHHHHHHHHHHHHHHhhc-------CcccCcccccCCHHHHHHHHHhh-HHHHh
Confidence 65 79999999999999999999999999999999999998520 13568999999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhHhhCCCCCCeEEEEEEeccchhhhhhhhhhhhccccchhccccCCCCCCCceEEECHHH
Q 017974 193 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGE 272 (363)
Q Consensus 193 ~Ls~v~SP~~i~g~liK~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLT~~E 272 (363)
|||+++|||++.|.++|.++.++.++++.+|++|+||||+|||.|+.|+++... +.++||+|||++|
T Consensus 196 ~ls~~~sP~~i~~~lik~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~~~~~~-------------~~~~vD~vlT~~E 262 (421)
T 1hfe_L 196 HFSTCKSPIGMNGALAKTYGAERMKYDPKQVYTVSIMPCIAKKYEGLRPELKSS-------------GMRDIDATLTTRE 262 (421)
T ss_dssp GBCSBCCHHHHHHHHHTTHHHHHHTCCGGGEEEEEEESCSHHHHHHTCTTCCTT-------------SSCSCCEEEEHHH
T ss_pred hccCCCCCceeehhhhchhhhhhcCCChhhEEEEEEeCCcchHHHhcCcccccc-------------CCCCCCeeeeHHH
Confidence 999999999999999999999999999999999999999999999999987432 3478999999999
Q ss_pred HHHHHHhcCCCCCCCCCCcccccCCCCCCCCccccCCCCcchHHHHHHHHHHHHhcCCccccccceeeeeC-CCeEEEEE
Q 017974 273 VLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVAL 351 (363)
Q Consensus 273 l~~~l~~~~i~l~~~~~~~~d~~~~~~s~~g~~~~~~~~SGG~~e~i~~~~~k~l~~~~i~~~l~~~~~rn-~d~~E~~l 351 (363)
|.+||++.||++.++++.++|.+++..++.|++|+. |||++++++|++++.++|.++. .++|+.+|| .||+|+++
T Consensus 263 l~~~~~~~gi~~~~l~~~~~d~~~~~~s~~g~~fg~---sGGv~ea~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~e~~~ 338 (421)
T 1hfe_L 263 LAYMIKKAGIDFAKLPDGKRDSLMGESTGGATIFGV---TGGVMEAALRFAYEAVTGKKPD-SWDFKAVRGLDGIKEATV 338 (421)
T ss_dssp HHHHHHHTTCCGGGCCCCCCCTTTCCCCHHHHGGGS---TTHHHHHHHHHHHHHHHSSCCS-CSCCGGGCSSCSEEEEEE
T ss_pred HHHHHHHcCCCcccCCcccccccccccCCCccccCC---CcCHHHHHHHHHHHHhcCCCCc-cccceeeccCCCceEEEE
Confidence 999999999999999999999998888888999987 9999999999999999999986 799999998 68999999
Q ss_pred Eecc
Q 017974 352 EVSF 355 (363)
Q Consensus 352 ~~~~ 355 (363)
..+.
T Consensus 339 ~~~~ 342 (421)
T 1hfe_L 339 NVGG 342 (421)
T ss_dssp EETT
T ss_pred ecCC
Confidence 7763
No 4
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=99.92 E-value=8.3e-29 Score=253.19 Aligned_cols=199 Identities=14% Similarity=0.080 Sum_probs=151.7
Q ss_pred CCCCcccccc-CCCceeeccCCcccCCccccccccccccccc--------------------------------------
Q 017974 38 KPQVSTSSKQ-QAEPVKISLKDCLACSGCITSAETVMLEKQS-------------------------------------- 78 (363)
Q Consensus 38 ~~~~~~~~~~-~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~~-------------------------------------- 78 (363)
.|+..++... .++.+.|+.++|+.||.|+.+||+++|....
T Consensus 195 aCP~gAI~~~~~~g~v~id~~kCigCg~Cv~~CP~~AI~~~~~~~~~~kC~~Cg~ri~~G~~P~Cv~~CP~~Ai~~g~~~ 274 (512)
T 1q16_B 195 TCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLL 274 (512)
T ss_dssp TCTTCCEEEETTTCCEEECTTTCCCCCCHHHHCTTCCEEEETTTTEEEECCTTHHHHTTTCCCHHHHTCTTCCEEEEEEE
T ss_pred hCCcCcEEeecCCCeEEECHHHCCCchHHHhhCCccceecccCCCCcccCcCCCchhhcCCCCceEeeCchhhhhccccc
Confidence 3566777643 5778999999999999999999998775321
Q ss_pred --HHHHHHhhc--CCCeEEEEeCcchhhHHhhHhCCChHHHHHHHHHHHHHcCCe-EEEechhHHHHHHHHHHHHHHHHH
Q 017974 79 --LDEFLSNIN--KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVK-SIFDTSCSRDLTLIEACNEFIARY 153 (363)
Q Consensus 79 --~~~~~~~L~--~~k~~V~sisP~~~~sl~~~f~~~~~~~~~~l~~~Lk~LGf~-~V~Dta~~adi~~~e~~~ef~~~~ 153 (363)
.+++++.++ +++.+++.++| +|..+|+ .+|..+||+|||+ +|+|+++++ .+.++++||..++
T Consensus 275 ~d~~~v~e~l~~~~~k~v~~~~~p----~~~~~f~-------~kvi~ALk~lGf~~~v~eta~~A--~i~ee~~E~~~~l 341 (512)
T 1q16_B 275 YDADAIERAASTENEKDLYQRQLD----VFLDPND-------PKVIEQAIKDGIPLSVIEAAQQS--PVYKMAMEWKLAL 341 (512)
T ss_dssp EEGGGHHHHHTCSSGGGHHHHHHT----TEECTTC-------HHHHHHHHHTTCCHHHHHHHTTC--HHHHHHTTSCCCE
T ss_pred cCHHHHHHHHhcccccceEEEecc----cccCccc-------HHHHHHHHHcCCCceEeeccccc--HHHHHHHHHHHHh
Confidence 223344442 22455555555 5666676 5999999999999 999999999 4567677766544
Q ss_pred hhhccCcccccCCCCCceecC---ChhH---HHHHH-hh--cCCCccCCCCCCCCHHHHHHHHHHHHHhHhhCCCCCCeE
Q 017974 154 KQSQESDDERSNSSLPMLSSA---CPGW---ICYAE-KQ--LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIY 224 (363)
Q Consensus 154 ~~~~~~~~~~~~~~~PlisS~---CPg~---V~yiE-k~--~~p~Li~~Ls~v~SP~~i~g~liK~~~~~~~~~~~~~i~ 224 (363)
. ..+.|+++|+ ||+| |+||| ++ | |+|+||||+++|||+++|+++|++.. ++|+
T Consensus 342 ~----------~~p~~~ttscv~ycP~~~~~v~~ie~~~~~~-P~l~~~ls~~~SPm~~~a~l~K~~~~-------~~v~ 403 (512)
T 1q16_B 342 P----------LHPEYRTLPMVWYVPPLSPIQSAADAGELGS-NGILPDVESLRIPVQYLANLLTAGDT-------KPVL 403 (512)
T ss_dssp E----------SCGGGSSCCSEEEECCCCCBCCCSSSCCCBT-TBTSCCGGGBSSCHHHHHHHHSTTCH-------HHHH
T ss_pred h----------cCCcCCcccCccccCCcHHHHHHHHhcccCC-ccccccccccchHHHHHHHHhhhcCC-------ccEE
Confidence 2 2345889999 9999 99999 98 9 99999999999999999999999754 3455
Q ss_pred EEEEEeccchhhhhhhhhhhhccccchhccccCCCCCCCc----eEEECHHHHHHHHHhcCCC
Q 017974 225 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV----DSVLTTGEVLDLIQLKAVN 283 (363)
Q Consensus 225 ~V~I~PC~aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~V----D~VLT~~El~~~l~~~~i~ 283 (363)
.| +||+||.|+++.... -.+..++ |+|||++|+.++++..+|.
T Consensus 404 ~v------~kk~ea~R~~~~~~~----------~~~~~d~~~~~d~~lT~~e~~~m~r~~~i~ 450 (512)
T 1q16_B 404 RA------LKRMLAMRHYKRAET----------VDGKVDTRALEEVGLTEAQAQEMYRYLAIA 450 (512)
T ss_dssp HH------HHHHHHHHHHHHHHH----------TTCCCCCHHHHHTTCCHHHHHHHHHHHTTC
T ss_pred EE------echhhhccHhhhhcc----------CCCcccchhHhhcCCCHHHHHHHHHHhCcc
Confidence 43 999999999875310 0124566 9999999999999998764
No 5
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=97.38 E-value=3.1e-06 Score=80.33 Aligned_cols=108 Identities=7% Similarity=-0.030 Sum_probs=67.2
Q ss_pred CCCCccccccCCCceeeccCCcccCCcccccccccccccccHHH-------HHHhhcC----C------------CeEEE
Q 017974 38 KPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDE-------FLSNINK----G------------KAVII 94 (363)
Q Consensus 38 ~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~~~~~-------~~~~L~~----~------------k~~V~ 94 (363)
.|+. ++.+..++.+.|+.++|++||.|+.+||+++|....... -.+.+.+ + -..+.
T Consensus 79 ~CP~-Ai~~~~~g~v~id~~~CigC~~C~~~CP~~Ai~~~~~~~~~~kC~~C~~r~~~~~~~G~~P~Cv~~CP~~Ai~~~ 157 (274)
T 1ti6_B 79 KGNG-AVYQREDGIVLIDPEKAKGKKELLDTCPYGVMYWNEEENVAQKCTMCAHLLDDESWAPKMPRCAHNCGSFVYEFL 157 (274)
T ss_dssp HTTT-SEEECTTSCEEECTTTTTTCGGGGGGCSSCCCEEETTTTEEECCCTTHHHHTCTTCTTCSCHHHHHCSSCCEEEE
T ss_pred hChH-HhhhccCCcEEechhhccchHHHHhhCccCCeEEEcccCccccCCCchhhhhhhccCCCCcchhhhCCcCceEEc
Confidence 4667 776556788999999999999999999999876432100 0111211 1 11122
Q ss_pred EeC-cchhhHHhhH--hCCChHHHHHHHHHHHHHcCCeEEE-echhHHHHHHHHHH
Q 017974 95 SLS-PQSRASLAEH--FGISPLQVFKKLTTFLKSLGVKSIF-DTSCSRDLTLIEAC 146 (363)
Q Consensus 95 sis-P~~~~sl~~~--f~~~~~~~~~~l~~~Lk~LGf~~V~-Dta~~adi~~~e~~ 146 (363)
-+. |+.+..+... |++.++...+....+|+.+||++|| |+.+++|..+.|++
T Consensus 158 ~~~dp~v~~~~~~~~~~~l~~~~~t~p~v~y~~~~~f~~~~l~~~~~a~~~~~~~~ 213 (274)
T 1ti6_B 158 KTTPEAMAKKVEEEGLEVIKPELGTKPRVYYKNLYRFEKNYVTAGILVQGDCFEGA 213 (274)
T ss_dssp EECHHHHHHHHHHHTCBCSSGGGCCCCSEEEESTHHHHCEEEEEEEEETTEECTTC
T ss_pred CCCcHHHHHHHhhccccccCcccCCCCeEEEEcCCCceeEeeccccccccccccCC
Confidence 222 2333334333 6666543333345667889999999 99999998766633
No 6
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=97.23 E-value=3.8e-05 Score=73.40 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=35.4
Q ss_pred eEEEEe----CcchhhHHhhHhCCCh--HHHHHHHHHHHHHcCCeEEEechhHHHHH
Q 017974 91 AVIISL----SPQSRASLAEHFGISP--LQVFKKLTTFLKSLGVKSIFDTSCSRDLT 141 (363)
Q Consensus 91 ~~V~si----sP~~~~sl~~~f~~~~--~~~~~~l~~~Lk~LGf~~V~Dta~~adi~ 141 (363)
.++.++ +| +++.+|+..+ ..+..++..+||.|||..|+++++|+++.
T Consensus 223 ~v~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~ 275 (294)
T 1kqf_B 223 HVMYVLHHADQP----ELYHGLPKDPKIDTSVSLWKGALKPLAAAGFIATFAGLIFH 275 (294)
T ss_dssp SEEEEETTTTCG----GGTTTCCSSCCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEccCCCc----hhhccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456665 66 6777776421 12468999999999999999999998876
No 7
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=96.59 E-value=0.0014 Score=49.14 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=38.3
Q ss_pred CCCCCCCCccccccCCCceeeccCCcccCCcccccccccccccc--cHHHHHHhhc
Q 017974 34 KNPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQ--SLDEFLSNIN 87 (363)
Q Consensus 34 ~~~~~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~--~~~~~~~~L~ 87 (363)
.+...+|..++.. .++...|+.+.|+.||.|+.+||+++|+.. ..+++++.+.
T Consensus 15 ~C~~~Cp~~ai~~-~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~ 69 (77)
T 1bc6_A 15 SCVEVCPVDCIHE-GEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFVPEEWKSYIQ 69 (77)
T ss_dssp SSTTTCTTCCEEE-CSSSEEECTTTCCSCCSHHHHSGGGSSEETTTSCHHHHHHHH
T ss_pred hhHHhcccccEEe-CCCcEEECcccCcCccCCHhhcCccceEecCCCHHHHHHHHH
Confidence 3444577777763 346788999999999999999999987633 3455555553
No 8
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=96.52 E-value=0.0025 Score=62.41 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=20.5
Q ss_pred hhHHhhHhCCChHHHHHHHHHHHHHcC
Q 017974 101 RASLAEHFGISPLQVFKKLTTFLKSLG 127 (363)
Q Consensus 101 ~~sl~~~f~~~~~~~~~~l~~~Lk~LG 127 (363)
+..|+..||-....+.++|..+|+++-
T Consensus 295 ~~~l~~~fg~~~~~~~~~~~~~~~~~~ 321 (352)
T 2ivf_B 295 LDVLEGLFGPEVKRVLAVLHTERENMR 321 (352)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 889999999544445589988887653
No 9
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=96.06 E-value=0.0031 Score=50.33 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=29.7
Q ss_pred CCCccccccCCCceeeccCCcccCCccccccccccccc
Q 017974 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 39 ~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
++..++.. .++.+.|+.+.|+.||.|+.+||+++|+.
T Consensus 20 CP~~ai~~-~~~~~~i~~~~C~~Cg~C~~~CP~~ai~~ 56 (106)
T 7fd1_A 20 CPVDCFYE-GPNFLVIHPDECIDCALCEPECPAQAIFS 56 (106)
T ss_dssp CTTCCEEE-CSSCEEECTTTCCCCCTTGGGCTTCCEEE
T ss_pred cCccceEc-CCCcEEECcccCCChhhhHHhCCChhhhc
Confidence 56666653 44678899999999999999999998763
No 10
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=95.67 E-value=0.004 Score=46.76 Aligned_cols=37 Identities=14% Similarity=0.369 Sum_probs=29.2
Q ss_pred CCCccccccCCCceeeccCCcccCCccccccccccccc
Q 017974 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 39 ~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
++..++.. .++...++.+.|+.||.|+.+||+++|+.
T Consensus 20 CP~~ai~~-~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~ 56 (78)
T 1h98_A 20 CPVECIYD-GGDQFYIHPEECIDCGACVPACPVNAIYP 56 (78)
T ss_dssp CTTCCEEE-CSSSEEECTTTCCCCCTHHHHCTTCCEEE
T ss_pred cCccceEc-CCCEEEECcccCCcHhHHHHhCCccceEe
Confidence 55556653 33668899999999999999999998763
No 11
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=95.67 E-value=0.0042 Score=43.26 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=27.1
Q ss_pred CCCCccccccCCCceeeccCCcccCCcccccccccccc
Q 017974 38 KPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 38 ~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.++..++.. .++...++.+.|+.||.|+.+||+++|+
T Consensus 17 ~CP~~ai~~-~~~~~~~~~~~C~~C~~C~~~CP~~ai~ 53 (55)
T 2fdn_A 17 ECPVNAISS-GDDRYVIDADTCIDCGACAGVCPVDAPV 53 (55)
T ss_dssp GCTTCCEEC-CSSSCEECTTTCCCCCHHHHTCTTCCEE
T ss_pred HCCccccCc-CCCEEEeccccCcChhChHHHcccccee
Confidence 455566653 3345678888999999999999988764
No 12
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=95.44 E-value=0.0075 Score=47.84 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=29.2
Q ss_pred CCCccccccCCCceeeccCCcccCCccccccccccccc
Q 017974 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 39 ~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
++..++.. .++...|+.++|+.||.|+.+||+++|+.
T Consensus 20 CP~~ai~~-~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~ 56 (105)
T 2v2k_A 20 CPVDCIYE-GARMLYIHPDECVDCGACEPVCPVEAIYY 56 (105)
T ss_dssp CTTCCEEE-CSSCEEECTTTCCCCCCSGGGCTTCCEEE
T ss_pred cCccccCc-CCCcEEEeCCcCcchhhHHHhCCccCEEe
Confidence 55566653 34567889999999999999999998764
No 13
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=95.37 E-value=0.012 Score=44.22 Aligned_cols=51 Identities=10% Similarity=0.150 Sum_probs=36.4
Q ss_pred CCCCCCCccccccCCCceeeccCCcccCC------cccccccccccccc-----cHHHHHHhh
Q 017974 35 NPDKPQVSTSSKQQAEPVKISLKDCLACS------GCITSAETVMLEKQ-----SLDEFLSNI 86 (363)
Q Consensus 35 ~~~~~~~~~~~~~~~~ka~I~~~dCi~Cg------~Cit~c~~~~i~~~-----~~~~~~~~L 86 (363)
+...+|..++.. .++...++.+.|+.|| .|+.+||+++|+.. +.+++++.+
T Consensus 14 C~~~CP~~ai~~-~~~~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~~~~~~~~~~~~ 75 (80)
T 1rgv_A 14 CVEECPNEAITP-GDPIYVIDPTKCSECVGAFDEPQCRLVCPADCIPDNPDYRETREELQEKY 75 (80)
T ss_dssp TTTTCTTCCEEC-CSSSCEECTTTCCTTTTTCSSCHHHHHCSSCCCCBCGGGCCCHHHHHHHH
T ss_pred HHHHcChhccCc-CCCeeEEcchhCcCCCCcCCccHHHHhcCcccEEecCCcccCHHHHHHHH
Confidence 344577777763 3456788999999999 99999999987532 345555443
No 14
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=95.23 E-value=0.0079 Score=45.62 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=35.3
Q ss_pred CCCCCccccccCCCceeeccCCcccCC------cccccccccccccc-----cHHHHHHhh
Q 017974 37 DKPQVSTSSKQQAEPVKISLKDCLACS------GCITSAETVMLEKQ-----SLDEFLSNI 86 (363)
Q Consensus 37 ~~~~~~~~~~~~~~ka~I~~~dCi~Cg------~Cit~c~~~~i~~~-----~~~~~~~~L 86 (363)
..+|..++.. .++...|+.++|+.|| .|+.+||+++|... +.+++++.+
T Consensus 16 ~~CP~~ai~~-~~~~~~i~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~~~~~~~~~~~~ 75 (82)
T 3eun_A 16 PECPNGAISQ-GDETYVIEPSLCTECVGHYETSQCVEVCPVDAIIKDPSHEETEDELRAKY 75 (82)
T ss_dssp GGCTTCCEEE-CSSSEEECGGGCCTTTTTCSSCHHHHHCTTCCEEECGGGCCCHHHHHHHH
T ss_pred HHCChhheEc-CCCceEEchhhcCCCCCCCCccHHHHhCCccceEEcCCCcCCHHHHHHHH
Confidence 3466667763 4567889999999999 89999999987633 245555443
No 15
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=95.07 E-value=0.01 Score=53.09 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=36.1
Q ss_pred CCCCCCCCccccccCCCceeeccCCcccCCccccccccccccc
Q 017974 34 KNPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 34 ~~~~~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.+...++..++....++.+.|+.+.|++||.|+.+||+.+|+.
T Consensus 65 ~C~~~CP~gAi~~~~~g~~~id~~~CigC~~C~~~CP~~Ai~~ 107 (195)
T 2vpz_B 65 PCVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACPYDARYL 107 (195)
T ss_dssp TTTTTCSSSCEEECTTSCEEECTTTCCCCCHHHHHCTTCCCEE
T ss_pred HHHHhcCCCceecccccceeecCCCCCCcChhHhhCCCCCeEE
Confidence 4555688888876667889999999999999999999998764
No 16
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=94.93 E-value=0.014 Score=43.99 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=34.4
Q ss_pred CCCCCccccccCCCceeeccCCcccCC------ccccccccccccc-----ccHHHHHHhh
Q 017974 37 DKPQVSTSSKQQAEPVKISLKDCLACS------GCITSAETVMLEK-----QSLDEFLSNI 86 (363)
Q Consensus 37 ~~~~~~~~~~~~~~ka~I~~~dCi~Cg------~Cit~c~~~~i~~-----~~~~~~~~~L 86 (363)
..+|..++.. .++...|+.+.|+.|| .|+.+||+++|+. .+.+++++.+
T Consensus 16 ~~CP~~ai~~-~~~~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~~~~~~~~~~~~ 75 (82)
T 2fgo_A 16 PECPNGAISQ-GEEIYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLDDANVESKDQLMEKY 75 (82)
T ss_dssp GGCTTCCEEE-CSSSEEECTTTCCTTTTTCSSCHHHHHCTTCCCCBCTTSCCCHHHHHHHH
T ss_pred HHCChhccCC-CCCeEEEEchhCccCCCcCCCCHhHhhCCcccEEccCCCccCHHHHHHHH
Confidence 3467677763 3456788899999999 8999999997753 2345555443
No 17
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=94.84 E-value=0.011 Score=44.79 Aligned_cols=25 Identities=12% Similarity=0.446 Sum_probs=21.7
Q ss_pred eeeccCCcccCCccccccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
+.++.+.|++||.|+.+||+++|..
T Consensus 1 ~~~~~~~C~~C~~C~~~CP~~ai~~ 25 (82)
T 3eun_A 1 ALMITDECINCDVCEPECPNGAISQ 25 (82)
T ss_dssp CEEECTTCCCCCTTGGGCTTCCEEE
T ss_pred CeEeCCCCcCccchHHHCChhheEc
Confidence 3578899999999999999998764
No 18
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=94.77 E-value=0.0069 Score=59.87 Aligned_cols=38 Identities=18% Similarity=0.356 Sum_probs=29.8
Q ss_pred CCCccccccC---CC----ceeeccCCcccCCccccccccccccc
Q 017974 39 PQVSTSSKQQ---AE----PVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 39 ~~~~~~~~~~---~~----ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
|+..++...+ ++ .+.|+.++|+.||.|+++||+.+|..
T Consensus 231 CPt~AI~~~~~~~~g~~~~~v~id~~~Ci~Cg~C~~~CP~~Ai~~ 275 (386)
T 3or1_B 231 CPTAAVKPITAEVNGQKVKSVAINNDRCMYCGNCYTMCPALPLSD 275 (386)
T ss_dssp CTTCCEEEEEEEETTEEEEEEEECTTTCCCCCHHHHHCTTCCCCC
T ss_pred CchhhccccccccCCccccccccCCCcCCccccHHHhCcHhhCcC
Confidence 5666666432 34 59999999999999999999988753
No 19
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=94.68 E-value=0.012 Score=44.86 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=18.6
Q ss_pred eeccCCcccCCccccccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.++.+.|++||.|+.+||+++|..
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~ 25 (85)
T 2zvs_A 2 LLITKKCINCDMCEPECPNEAISM 25 (85)
T ss_dssp EEECTTCCCCCTTTTTCTTCCEEC
T ss_pred EEeCCcCcChhHHHHHCchhccCc
Confidence 466788888888888888887653
No 20
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=94.65 E-value=0.011 Score=44.37 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=20.9
Q ss_pred eeccCCcccCCccccccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.++.+.|++||.|+.+||+++|..
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~ 25 (80)
T 1rgv_A 2 LYINDDCTACDACVEECPNEAITP 25 (80)
T ss_dssp BCCCSCCCCCCTTTTTCTTCCEEC
T ss_pred eEeCCCCcChhhHHHHcChhccCc
Confidence 467789999999999999998764
No 21
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=94.58 E-value=0.017 Score=40.06 Aligned_cols=25 Identities=16% Similarity=0.470 Sum_probs=20.9
Q ss_pred eeeccCCcccCCcccccccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
+.| .++|++||.|+.+||.+++...
T Consensus 2 ~~i-~~~C~~C~~C~~~CP~~ai~~~ 26 (55)
T 2fdn_A 2 YVI-NEACISCGACEPECPVNAISSG 26 (55)
T ss_dssp EEE-CTTCCCCCTTGGGCTTCCEECC
T ss_pred eEe-cccCcChhhHHHHCCccccCcC
Confidence 345 8899999999999999987543
No 22
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=94.54 E-value=0.0084 Score=58.77 Aligned_cols=38 Identities=16% Similarity=0.405 Sum_probs=32.2
Q ss_pred CCCCcccccc-CCCceeeccCCcccCCcccccccccccc
Q 017974 38 KPQVSTSSKQ-QAEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 38 ~~~~~~~~~~-~~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.||..++... .++++.|+.++|+.||.|+.+||+.+|.
T Consensus 219 ~CP~~AI~~~~~~~~~~id~~~C~~Cg~C~~~CP~~Ai~ 257 (366)
T 3mm5_B 219 ACPTGALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPLF 257 (366)
T ss_dssp TCTTCCEEEETTTTEEEECGGGCCCCCHHHHHCTTCCCC
T ss_pred cCCccceEecCCCCeEEEehhhCCCcchHHHhCCHhhcc
Confidence 4677777644 4789999999999999999999998764
No 23
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=94.49 E-value=0.013 Score=44.15 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=20.9
Q ss_pred eeccCCcccCCccccccccccccc
Q 017974 53 KISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.++.+.|++||.|+.+||+++|..
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~ 25 (82)
T 2fgo_A 2 LKITDDCINCDVCEPECPNGAISQ 25 (82)
T ss_dssp BCCCTTCCCCCTTGGGCTTCCEEE
T ss_pred ceeCCCCCChhhHHHHCChhccCC
Confidence 367789999999999999998764
No 24
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=94.47 E-value=0.01 Score=42.40 Aligned_cols=24 Identities=21% Similarity=0.612 Sum_probs=20.2
Q ss_pred ceeeccCCcccCCcccccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
++.|+.++|++||.|+.+|| .++.
T Consensus 3 ~~~id~~~C~~Cg~C~~~CP-~~~~ 26 (64)
T 1dax_A 3 KFYVDQDECIACESCVEIAP-GAFA 26 (64)
T ss_dssp CCEECSTTCCSCCHHHHHCT-TTEE
T ss_pred EEEEccccCCCchHHHHhCC-ccEe
Confidence 45788899999999999999 6554
No 25
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.011 Score=61.88 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=28.4
Q ss_pred cCCCceeeccCCcccCCccccccccccccccc
Q 017974 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 47 ~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~~ 78 (363)
..++++.|+++.||+||-||.-||+.||+-.+
T Consensus 43 ~~~~~~~i~~~~c~~~~~~~~~cp~~~i~i~n 74 (608)
T 3j16_B 43 PTSKIAFISEILCIGCGICVKKCPFDAIQIIN 74 (608)
T ss_dssp TTTTEEEECTTTCCCCCHHHHHCSSCCEEEEE
T ss_pred CCCCceEEehhhccccccccccCCccceEEec
Confidence 47789999999999999999999999876544
No 26
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=94.32 E-value=0.022 Score=43.38 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=32.1
Q ss_pred CCCCCCCccccccCCCceeeccCCcccCC------cccccccc-ccccc
Q 017974 35 NPDKPQVSTSSKQQAEPVKISLKDCLACS------GCITSAET-VMLEK 76 (363)
Q Consensus 35 ~~~~~~~~~~~~~~~~ka~I~~~dCi~Cg------~Cit~c~~-~~i~~ 76 (363)
+...+|..++.. .++...++.+.|+.|| .|+.+||+ ++|+.
T Consensus 14 C~~~CP~~ai~~-~~~~~~~~~~~C~~C~~~~~~~~C~~~CP~~~Ai~~ 61 (85)
T 2zvs_A 14 CEPECPNEAISM-GDHIYEINSDKCTECVGHYETPTCQKVCPIPNTIVK 61 (85)
T ss_dssp TTTTCTTCCEEC-CSSSCEECGGGCCTTTTTCSSCHHHHHCSSCCEEEC
T ss_pred HHHHCchhccCc-CCCceEEeChhccCCCCcCCccHhhHhCcCCCCEEe
Confidence 445677777763 3456788999999999 99999999 87753
No 27
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=94.17 E-value=0.014 Score=45.91 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=24.7
Q ss_pred CCCceeeccCCcccCCccccccccccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
...++.|+.+.|++||.|+.+||..++..
T Consensus 34 ~~~~~~id~~~C~~Cg~C~~~CP~~ai~~ 62 (103)
T 1xer_A 34 HGTIVGVDFDLCIADGSCINACPVNVFQW 62 (103)
T ss_dssp ECSSEEEETTTCCCCCHHHHHCTTCCCEE
T ss_pred cCceEEEehhhCCChhhHHHHcCccCeec
Confidence 34578899999999999999999887653
No 28
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=94.01 E-value=0.017 Score=57.67 Aligned_cols=38 Identities=13% Similarity=0.339 Sum_probs=32.4
Q ss_pred CCCCCccccccCCCceeeccCCcccCCcccccccccccc
Q 017974 37 DKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 37 ~~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
..||..++.. .++++.|+.+.|+.||.|+.+||+.++.
T Consensus 265 ~~CPt~Ai~~-~~~~~~id~~~Ci~Cg~Ci~~CP~~~~~ 302 (418)
T 3mm5_A 265 KLCPTGAIKW-DGKELTIDNRECVRCMHCINKMPKALKP 302 (418)
T ss_dssp GGCTTCCEEE-CSSCEEECTTTCCCCCHHHHHCTTTEEC
T ss_pred ccCCcccccc-CCceeEEChhhcCccChhHHhCcHhhcc
Confidence 3578888885 4789999999999999999999998654
No 29
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=93.92 E-value=0.015 Score=43.91 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=19.9
Q ss_pred ceeeccCCcccCCccccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~i 74 (363)
++.|+.++|++||.|+.+|| .++
T Consensus 3 ~v~vd~~~CigCg~C~~~CP-~~~ 25 (81)
T 1iqz_A 3 YTIVDKETCIACGACGAAAP-DIY 25 (81)
T ss_dssp EEEECTTTCCCCSHHHHHCT-TTE
T ss_pred EEEEecccCcccChhhHhCc-hhe
Confidence 46789999999999999999 444
No 30
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=93.89 E-value=0.014 Score=43.47 Aligned_cols=25 Identities=24% Similarity=0.599 Sum_probs=18.8
Q ss_pred ceeeccCCcccCCcccccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
+..++.+.|++||.|+.+||+.++.
T Consensus 2 ~~~~~~~~C~~Cg~C~~~CP~~a~~ 26 (80)
T 1jb0_C 2 HTVKIYDTCIGCTQCVRACPTDVLE 26 (80)
T ss_dssp CEEEEETTCCCCCHHHHHCTTCCCE
T ss_pred CCcccCCcCcChhHHHHHCCccccc
Confidence 3456677888888888888877654
No 31
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=93.89 E-value=0.02 Score=39.85 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=18.0
Q ss_pred CCceeec--cCCcccCCcccccccccccc
Q 017974 49 AEPVKIS--LKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 49 ~~ka~I~--~~dCi~Cg~Cit~c~~~~i~ 75 (363)
+++..+. .+.|+.||.|+.+||+++|+
T Consensus 29 ~~~~~~~~~~~~c~~C~~C~~~CP~~Ai~ 57 (60)
T 1rof_A 29 DGKAKVLQPETDLPCAKDAADSCPTGAIS 57 (60)
T ss_dssp SSCCCBSCSSCCSTTHHHHHHHCTTCCEE
T ss_pred CCCEeecCchhhHHHHHHHHHhCCHhHEE
Confidence 3444443 57777888888888877664
No 32
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=93.74 E-value=0.017 Score=54.90 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=32.1
Q ss_pred CCC-ccccccCCCceeeccCCcccCCccccccccccccc
Q 017974 39 PQV-STSSKQQAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 39 ~~~-~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
|+. .++....++.+.|+.+.|+.||.|+.+||++++..
T Consensus 112 CP~~gAi~~~~~g~v~id~~~CigCg~C~~~CP~~ai~~ 150 (294)
T 1kqf_B 112 CPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRL 150 (294)
T ss_dssp CCSTTSEEEETTSCEEECGGGCCCCCHHHHHCTTCCCEE
T ss_pred CCccCccccccccceEeCcccCCCcchhhhcCCCCCcEe
Confidence 566 67766678899999999999999999999998754
No 33
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=93.70 E-value=0.027 Score=39.21 Aligned_cols=22 Identities=23% Similarity=0.638 Sum_probs=19.3
Q ss_pred ceeeccCCcccCCccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETV 72 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~ 72 (363)
++.|+.+.|++||.|+.+||..
T Consensus 2 ~~~i~~~~C~~C~~C~~~Cp~~ 23 (60)
T 1rof_A 2 KVRVDADACIGCGVCENLCPDV 23 (60)
T ss_dssp CSEECTTTCCSCCSSTTTCTTT
T ss_pred EEEEchhhCCCChHHHHhCcHH
Confidence 4578889999999999999974
No 34
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=93.62 E-value=0.016 Score=40.45 Aligned_cols=21 Identities=33% Similarity=1.048 Sum_probs=18.0
Q ss_pred ceeeccCCcccCCccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETV 72 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~ 72 (363)
++.|+ ++|++||.|+.+||+.
T Consensus 1 ~v~id-~~C~~C~~C~~~CP~~ 21 (58)
T 1f2g_A 1 PIEVN-DDCMACEACVEICPDV 21 (58)
T ss_dssp CCBCT-TTCCCCCHHHHHCTTT
T ss_pred CcEEC-CcCccchHHHHhCCcc
Confidence 35678 9999999999999984
No 35
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=93.61 E-value=0.011 Score=50.69 Aligned_cols=41 Identities=7% Similarity=0.174 Sum_probs=30.4
Q ss_pred CCCCccccccCCC-c-eeeccCCcccCCccccccccccccccc
Q 017974 38 KPQVSTSSKQQAE-P-VKISLKDCLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 38 ~~~~~~~~~~~~~-k-a~I~~~dCi~Cg~Cit~c~~~~i~~~~ 78 (363)
.|+..++....++ + ..|+.+.|+.||.|+.+||+++|....
T Consensus 24 ~CP~~ai~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~ 66 (150)
T 1jnr_B 24 ICPNDLMTLDKEKMKAYNREPDMCWECYSCVKMCPQGAIDVRG 66 (150)
T ss_dssp HCTTSCEEEETTTTEEEESCGGGCCCCCHHHHHCTTCCEEECC
T ss_pred hcCccCeEEecCCceeeeeCcccCcCHhHHHHhCCccceEecC
Confidence 4666666533333 3 468889999999999999999887554
No 36
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=93.53 E-value=0.033 Score=38.57 Aligned_cols=28 Identities=7% Similarity=0.019 Sum_probs=22.0
Q ss_pred CCCcee--eccCCcccCCcccccccccccc
Q 017974 48 QAEPVK--ISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 48 ~~~ka~--I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
.++++. ++.+.|..||.|+.+||+++|+
T Consensus 28 ~~~~~~~~~~~~~c~~C~~C~~~CP~~Ai~ 57 (59)
T 1dwl_A 28 GEEKAMVTAPDSTAECAQDAIDACPVEAIS 57 (59)
T ss_dssp CSSCEEESCTTCCCGGGGTGGGGSTTCCEE
T ss_pred CCCcEEEecChhhhhHHHHHHHhCCHhhEE
Confidence 445555 4788899999999999998865
No 37
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=93.36 E-value=0.014 Score=41.71 Aligned_cols=27 Identities=4% Similarity=-0.048 Sum_probs=21.6
Q ss_pred Cceeec---cCCcccCCccccccccccccc
Q 017974 50 EPVKIS---LKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 50 ~ka~I~---~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
+++.+. .+.|+.||.|+.+||+++|+.
T Consensus 32 ~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~ 61 (64)
T 1dax_A 32 EKAYVKDVEGASQEEVEEAMDTCPVQCIHW 61 (64)
T ss_dssp SSEEECCGGGSCHHHHHHHHHHSSSCCEEC
T ss_pred CEEEEecCCCcchhHHHHHHHhCCHhhEee
Confidence 454433 689999999999999998764
No 38
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=93.34 E-value=0.018 Score=50.11 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=29.9
Q ss_pred CCCCccccccCCC--ceeeccCCcccCCccccccccccccccc
Q 017974 38 KPQVSTSSKQQAE--PVKISLKDCLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 38 ~~~~~~~~~~~~~--ka~I~~~dCi~Cg~Cit~c~~~~i~~~~ 78 (363)
.|+..++....++ .+.++.++|+.||.|+.+||+++|....
T Consensus 23 ~CP~~ai~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 65 (166)
T 3gyx_B 23 ICPNDLMILDPEEMKAFNQEPEACWECYSCIKICPQGAITARP 65 (166)
T ss_dssp HCTTSCEEEETTTTEEEESCGGGCCCCCHHHHHCSSCCEEECC
T ss_pred hCCccccEEecCCceeEecCcccCcccChHhHhCCccceEEec
Confidence 3666676543333 3457788999999999999999887554
No 39
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=93.09 E-value=0.041 Score=38.10 Aligned_cols=21 Identities=19% Similarity=0.749 Sum_probs=18.7
Q ss_pred ceeeccCCcccCCcccccccc
Q 017974 51 PVKISLKDCLACSGCITSAET 71 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~ 71 (363)
++.|+.+.|++||.|+.+||.
T Consensus 1 ~i~i~~~~C~~C~~C~~~Cp~ 21 (59)
T 1dwl_A 1 TIVIDHEECIGCESCVELCPE 21 (59)
T ss_dssp CEEESSCCCSSCCGGGGTSTT
T ss_pred CeEEChhhCcChhHHHHHCCH
Confidence 357888999999999999995
No 40
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=92.97 E-value=0.024 Score=39.52 Aligned_cols=24 Identities=13% Similarity=0.009 Sum_probs=20.8
Q ss_pred eeec--cCCcccCCcccccccccccc
Q 017974 52 VKIS--LKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 52 a~I~--~~dCi~Cg~Cit~c~~~~i~ 75 (363)
..++ .+.|+.||.|+.+||+++|+
T Consensus 31 ~~~~~~~~~C~~C~~C~~~CP~~Ai~ 56 (58)
T 1f2g_A 31 AVVINPDSDLDCVEEAIDSCPAEAIV 56 (58)
T ss_dssp EEESCTTCCSTHHHHHHHTCSSCCCB
T ss_pred EEeCCCccchHHHHHHHhhCChhhEE
Confidence 4566 78999999999999999875
No 41
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=92.96 E-value=0.024 Score=40.24 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=20.2
Q ss_pred ceeeccCCcccCCcccccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
++.|+.+.|++||.|+.+||. ++.
T Consensus 3 ~~~id~~~C~~C~~C~~~Cp~-~~~ 26 (66)
T 1sj1_A 3 KVSVDQDTCIGDAICASLCPD-VFE 26 (66)
T ss_dssp EEEECTTTCCCCCHHHHHCTT-TEE
T ss_pred EEEECcccCcCchHHHHhCCc-eEE
Confidence 467888999999999999996 543
No 42
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=92.74 E-value=0.027 Score=48.64 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.2
Q ss_pred ceeeccCCcccCCcccccccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
...++.++|+.||.|+.+||+++|...
T Consensus 90 ~~~~~~~~C~~C~~C~~~CP~~Ai~~~ 116 (182)
T 3i9v_9 90 VYEINMLRCIFCGLCEEACPTGAIVLG 116 (182)
T ss_dssp EEEEETTTCCCCCHHHHHCSSSCEEEC
T ss_pred eeecCCCcCcChhChhhhCCccceEec
Confidence 457889999999999999999987643
No 43
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=92.65 E-value=0.021 Score=44.77 Aligned_cols=25 Identities=12% Similarity=0.518 Sum_probs=21.7
Q ss_pred eeeccCCcccCCccccccccccccc
Q 017974 52 VKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
..++.+.|+.||.|+.+||++||+.
T Consensus 76 ~~~~~~~C~~Cg~C~~~CP~~Ai~~ 100 (103)
T 1xer_A 76 DPVNEQACIFCMACVNVCPVAAIDV 100 (103)
T ss_dssp ECTTGGGCCCCCHHHHHCTTCCEEE
T ss_pred eecCcccccChhhHHHhccccceEe
Confidence 4577889999999999999998763
No 44
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=92.61 E-value=0.031 Score=56.12 Aligned_cols=37 Identities=16% Similarity=0.350 Sum_probs=31.5
Q ss_pred CCCCCccccccCCCceeeccCCcccCCccccccccccc
Q 017974 37 DKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 37 ~~~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i 74 (363)
+.||.++++. .+++..|+.++|+.||.|+++||+.+.
T Consensus 282 ~~CPt~ai~~-~~~~l~Id~~~C~~Cg~Ci~~CP~al~ 318 (437)
T 3or1_A 282 GLCPTGCMTY-ESGTLSIDNKNCTRCMHCINTMPRALK 318 (437)
T ss_dssp TTCTTCCEEE-ETTEEEECGGGCCCCSHHHHHCTTTEE
T ss_pred ccCcHHheee-cCCEEEEccccCCchhhhHhhCcHhhc
Confidence 3578888874 468999999999999999999998764
No 45
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=92.58 E-value=0.049 Score=40.47 Aligned_cols=25 Identities=8% Similarity=0.344 Sum_probs=21.6
Q ss_pred eeeccCCccc--CCccccccccccccc
Q 017974 52 VKISLKDCLA--CSGCITSAETVMLEK 76 (363)
Q Consensus 52 a~I~~~dCi~--Cg~Cit~c~~~~i~~ 76 (363)
+.|+.+.|++ ||.|+.+||+++|..
T Consensus 1 a~i~~~~C~~c~C~~C~~~Cp~~ai~~ 27 (77)
T 1bc6_A 1 AYVITEPCIGTKDASCVEVCPVDCIHE 27 (77)
T ss_dssp CEECCSTTTTCCCCSSTTTCTTCCEEE
T ss_pred CEEeCccCCCCCcchhHHhcccccEEe
Confidence 3578899999 999999999998754
No 46
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=91.63 E-value=0.031 Score=41.46 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=19.5
Q ss_pred eccCCcccCCcccccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
+..+.|+.||.|+.+||+++|+
T Consensus 42 ~~~~~C~~Cg~C~~~CP~~ai~ 63 (80)
T 1jb0_C 42 PRTEDCVGCKRCETACPTDFLS 63 (80)
T ss_dssp TTGGGCCCCCHHHHHCCSSSCS
T ss_pred CCCCcCcCcCChhhhCCCCccE
Confidence 4678999999999999999875
No 47
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=90.77 E-value=0.052 Score=43.01 Aligned_cols=25 Identities=12% Similarity=0.468 Sum_probs=21.5
Q ss_pred eeccCCcccCC--cccccccccccccc
Q 017974 53 KISLKDCLACS--GCITSAETVMLEKQ 77 (363)
Q Consensus 53 ~I~~~dCi~Cg--~Cit~c~~~~i~~~ 77 (363)
.|+.+.|++|| .|+.+||+++|...
T Consensus 2 ~~~~~~C~~C~~~~C~~~CP~~ai~~~ 28 (106)
T 7fd1_A 2 FVVTDNCIKCKYTDCVEVCPVDCFYEG 28 (106)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEEC
T ss_pred eECccccCCccCcHHHHHcCccceEcC
Confidence 57789999999 99999999987643
No 48
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=90.28 E-value=0.058 Score=46.46 Aligned_cols=21 Identities=24% Similarity=0.659 Sum_probs=18.4
Q ss_pred ccCCcccCCcccccccccccc
Q 017974 55 SLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
+.++|++||.|+.+||+.++.
T Consensus 49 d~~~Ci~C~~C~~~CP~~ai~ 69 (182)
T 3i9v_9 49 GLEKCIGCSLCAAACPAYAIY 69 (182)
T ss_dssp SCBSCCCCCHHHHHCTTCCEE
T ss_pred CCccCcccccchhhCCcccEE
Confidence 457999999999999998764
No 49
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=90.08 E-value=0.066 Score=39.89 Aligned_cols=25 Identities=8% Similarity=0.313 Sum_probs=21.3
Q ss_pred eeccCCccc--CCcccccccccccccc
Q 017974 53 KISLKDCLA--CSGCITSAETVMLEKQ 77 (363)
Q Consensus 53 ~I~~~dCi~--Cg~Cit~c~~~~i~~~ 77 (363)
.|+.+.|++ ||.|+.+||.++|...
T Consensus 2 ~i~~~~C~~c~C~~C~~~CP~~ai~~~ 28 (78)
T 1h98_A 2 HVICEPCIGVKDQSCVEVCPVECIYDG 28 (78)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEEC
T ss_pred EEEchhCCCCCcChhhhhcCccceEcC
Confidence 477889999 9999999999987643
No 50
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=89.89 E-value=0.082 Score=45.92 Aligned_cols=26 Identities=15% Similarity=0.465 Sum_probs=22.7
Q ss_pred ceeeccCCcccCC-----ccccccccccccc
Q 017974 51 PVKISLKDCLACS-----GCITSAETVMLEK 76 (363)
Q Consensus 51 ka~I~~~dCi~Cg-----~Cit~c~~~~i~~ 76 (363)
++.|+.++|++|| .|+.+||..+|..
T Consensus 1 pv~id~~~C~gC~~c~~~~C~~~CP~~ai~~ 31 (166)
T 3gyx_B 1 PTYVDPSKCDGCKGGEKTACMYICPNDLMIL 31 (166)
T ss_dssp CEEECTTTCCCCCSSSCCHHHHHCTTSCEEE
T ss_pred CCEEcchhcCCCCCCCcchhHHhCCccccEE
Confidence 3678999999999 9999999998754
No 51
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=89.74 E-value=0.045 Score=41.12 Aligned_cols=21 Identities=5% Similarity=-0.241 Sum_probs=18.7
Q ss_pred cCCcccCCccccccccccccc
Q 017974 56 LKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.+.|..||.|+.+||++||+.
T Consensus 48 ~~~c~~C~~C~~~CP~~AI~~ 68 (81)
T 1iqz_A 48 DILIDDMMDAFEGCPTDSIKV 68 (81)
T ss_dssp GGGHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHHhCCHhHEEE
Confidence 568999999999999998764
No 52
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=89.55 E-value=0.099 Score=52.04 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=23.7
Q ss_pred ceeeccCCcccCCccccccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.+.++.++|+.||.|+.+||+++|..
T Consensus 27 ~i~~d~~kCi~Cg~C~~~CP~~ai~~ 52 (421)
T 1hfe_L 27 FVQIDEAKCIGCDTCSQYCPTAAIFG 52 (421)
T ss_dssp SEEECTTTCCCCCHHHHHCTTCCCBC
T ss_pred eEEECcccCCCccHHHHhcCcCceec
Confidence 68899999999999999999998764
No 53
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=89.54 E-value=0.086 Score=54.37 Aligned_cols=37 Identities=11% Similarity=0.302 Sum_probs=30.1
Q ss_pred CCCccccc-c-CCC---ceeeccCCcccCCcccccccccccc
Q 017974 39 PQVSTSSK-Q-QAE---PVKISLKDCLACSGCITSAETVMLE 75 (363)
Q Consensus 39 ~~~~~~~~-~-~~~---ka~I~~~dCi~Cg~Cit~c~~~~i~ 75 (363)
||..+++. . .++ +..|+.+.||.||.|...||+.+|+
T Consensus 528 CPa~~~~~~~~~~~~~~~~~i~~~~Ci~C~~C~~~cp~~~i~ 569 (584)
T 2gmh_A 528 CPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQNIN 569 (584)
T ss_dssp CTTCCEEEEECSSTTCEEEEECGGGCCCCCHHHHHCTTCCEE
T ss_pred CChhhEEEeecCCCCceEEEEeCCCCcCCCCchhhCCCCCce
Confidence 66666654 2 455 8999999999999999999999874
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.38 E-value=0.096 Score=54.61 Aligned_cols=29 Identities=14% Similarity=0.277 Sum_probs=25.8
Q ss_pred CCCceeeccCCcccCCccccccccccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
.++++.|+++.|++||-|+..||+.+|+-
T Consensus 58 ~~~~~~i~e~~c~gc~~~~~~~p~~~i~i 86 (607)
T 3bk7_A 58 ENYKPIIQEASCTGCGICVHKCPFNAISI 86 (607)
T ss_dssp TTTEEEECTTTCCCCCHHHHHCSSCCCEE
T ss_pred CCCcceeeecccCccccccCCCCcceEEE
Confidence 45899999999999999999999886654
No 55
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=88.94 E-value=0.089 Score=41.42 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=21.5
Q ss_pred eeeccCCcccC--Cccccccccccccc
Q 017974 52 VKISLKDCLAC--SGCITSAETVMLEK 76 (363)
Q Consensus 52 a~I~~~dCi~C--g~Cit~c~~~~i~~ 76 (363)
+.|+.+.|++| |.|+.+||+++|..
T Consensus 1 ~~i~~~~C~~C~c~~C~~~CP~~ai~~ 27 (105)
T 2v2k_A 1 TYVIAEPCVDVKDKACIEECPVDCIYE 27 (105)
T ss_dssp CEEECGGGTTTCCCHHHHHCTTCCEEE
T ss_pred CEEecccCCCCCcChhhhhcCccccCc
Confidence 46788999988 99999999998764
No 56
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=88.64 E-value=0.077 Score=47.95 Aligned_cols=37 Identities=14% Similarity=-0.022 Sum_probs=30.6
Q ss_pred CccccccC-CCceeeccCCcc--cCCcccccccccccccc
Q 017974 41 VSTSSKQQ-AEPVKISLKDCL--ACSGCITSAETVMLEKQ 77 (363)
Q Consensus 41 ~~~~~~~~-~~ka~I~~~dCi--~Cg~Cit~c~~~~i~~~ 77 (363)
..++.... .+.+.|+.+.|+ +||.|+.+||+++|...
T Consensus 89 ~gAi~~~~~~g~v~id~~~C~~~~C~~C~~~CP~~Ai~~~ 128 (214)
T 1h0h_B 89 ESAIIHDDATGCVLFTPKTKDLEDYESVISACPYDVPRKV 128 (214)
T ss_dssp TTSEEECTTTCCEEECGGGGGCSCHHHHHHHCTTCCCEEC
T ss_pred cccEEecCCCCeEEEeHHHCccccccHHHHhcCCCCeEec
Confidence 66666444 688999999999 99999999999987643
No 57
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=88.58 E-value=0.12 Score=44.12 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=22.5
Q ss_pred ceeeccCCcccCC-----ccccccccccccc
Q 017974 51 PVKISLKDCLACS-----GCITSAETVMLEK 76 (363)
Q Consensus 51 ka~I~~~dCi~Cg-----~Cit~c~~~~i~~ 76 (363)
++.|+.+.|++|| .|+.+||+++|..
T Consensus 2 ~~~vd~~~C~~C~~~~~~~C~~~CP~~ai~~ 32 (150)
T 1jnr_B 2 PSFVNPEKCDGCKALERTACEYICPNDLMTL 32 (150)
T ss_dssp CEEECTTTCCSCCSSSSCHHHHHCTTSCEEE
T ss_pred ceEECcccCCCCCCcccccchhhcCccCeEE
Confidence 3568899999999 9999999998754
No 58
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=85.24 E-value=0.17 Score=56.97 Aligned_cols=26 Identities=23% Similarity=0.568 Sum_probs=22.4
Q ss_pred ceeeccCCcccCCcccccccc--ccccc
Q 017974 51 PVKISLKDCLACSGCITSAET--VMLEK 76 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~--~~i~~ 76 (363)
...|+.++|+.||.|+.+||+ ++|..
T Consensus 736 ~~~v~~~~C~gCG~Cv~vCP~~~~AI~~ 763 (1231)
T 2c42_A 736 RIQINTLDCMGCGNCADICPPKEKALVM 763 (1231)
T ss_dssp EEEECTTTCCCCCHHHHHCSSSSCSEEE
T ss_pred ceeechhhCCChhHHHhhCCCCccCeEE
Confidence 357899999999999999999 77653
No 59
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=83.52 E-value=0.29 Score=44.44 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=17.9
Q ss_pred ccCCcccCCccccccccccc
Q 017974 55 SLKDCLACSGCITSAETVML 74 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~i 74 (363)
....|+.||.|+.+||+++.
T Consensus 202 ~~~~C~~Cg~C~~vCP~gi~ 221 (238)
T 2wdq_B 202 SVFRCHSIMNCVSVCPKGLN 221 (238)
T ss_dssp TTTTCCCCCHHHHHCTTCCC
T ss_pred CCCcCcccchhhhhcCCCCC
Confidence 67899999999999999863
No 60
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=83.51 E-value=0.27 Score=55.34 Aligned_cols=26 Identities=12% Similarity=0.342 Sum_probs=22.6
Q ss_pred ceeeccCCcccCCccccccccccccc
Q 017974 51 PVKISLKDCLACSGCITSAETVMLEK 76 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~~~i~~ 76 (363)
...++.+.|+.||.|+.+||+.+|..
T Consensus 680 ~p~~d~~kCi~Cg~Cv~vCP~~AI~~ 705 (1231)
T 2c42_A 680 VPQWVPENCIQCNQCAFVCPHSAILP 705 (1231)
T ss_dssp EEEECTTTCCCCCHHHHHCSSCCEEE
T ss_pred ceEEeCccCCchhhHHHhCCcccccc
Confidence 35678999999999999999998764
No 61
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=81.04 E-value=0.45 Score=50.91 Aligned_cols=21 Identities=5% Similarity=-0.192 Sum_probs=18.2
Q ss_pred CcccCCccccccccccccccc
Q 017974 58 DCLACSGCITSAETVMLEKQS 78 (363)
Q Consensus 58 dCi~Cg~Cit~c~~~~i~~~~ 78 (363)
+|+.||.|+.+||+++|+...
T Consensus 219 ~C~~CG~Cv~vCP~gAl~~~~ 239 (783)
T 3i9v_3 219 PSGFSGNITDICPVGALLDLT 239 (783)
T ss_dssp CSTTTTTHHHHCSSSSEEEGG
T ss_pred CCccchhHHhhcccCceeccc
Confidence 799999999999999887554
No 62
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=80.63 E-value=0.32 Score=45.30 Aligned_cols=38 Identities=8% Similarity=0.126 Sum_probs=25.0
Q ss_pred CCCccccccCCCceeeccCCcccCCcccccccccccccc
Q 017974 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQ 77 (363)
Q Consensus 39 ~~~~~~~~~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~~~ 77 (363)
|+..++....+..+.++..+|+.||.|+.+|| .++...
T Consensus 183 CP~g~I~id~~~~v~~d~~~C~~C~~C~~vCp-~aI~~~ 220 (265)
T 2pa8_D 183 CPEGVFELKDGKLSVKNELSCTLCEECLRYCN-GSIRIS 220 (265)
T ss_dssp CTTCCEEEETTEEEESCGGGCCCCCHHHHHHT-TSEEEE
T ss_pred CcccCeEecCCeeEEeccccCCCchHHHHhCC-CceEEE
Confidence 44445443333334556689999999999999 776543
No 63
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=80.05 E-value=0.23 Score=34.90 Aligned_cols=19 Identities=0% Similarity=-0.073 Sum_probs=16.4
Q ss_pred CcccCCccccccccccccc
Q 017974 58 DCLACSGCITSAETVMLEK 76 (363)
Q Consensus 58 dCi~Cg~Cit~c~~~~i~~ 76 (363)
.|..||.|+.+||+++|+.
T Consensus 45 ~c~~c~~C~~~CP~~Ai~~ 63 (66)
T 1sj1_A 45 LYNCAKEAMEACPVSAITI 63 (66)
T ss_dssp HHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHhhCCHhhEEE
Confidence 4789999999999998764
No 64
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=79.96 E-value=0.48 Score=42.90 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=18.2
Q ss_pred eccCCcccCCccccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~i 74 (363)
...+.||.||.|+.+||...+
T Consensus 144 ~~~~~Ci~Cg~C~~~CP~~~~ 164 (238)
T 2wdq_B 144 DGLYECILCACCSTSCPSFWW 164 (238)
T ss_dssp TTTTTCCCCCTTGGGCHHHHH
T ss_pred hccccccccCCchhhCcCCcc
Confidence 457899999999999998864
No 65
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=79.54 E-value=0.42 Score=43.44 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=17.0
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
...+|+.||.|+.+||+++
T Consensus 200 ~~~~C~~Cg~C~~vCP~gi 218 (243)
T 1kf6_B 200 GVWSCTFVGYCSEVCPKHV 218 (243)
T ss_dssp TGGGCCCCCHHHHHCTTCC
T ss_pred CcccCcccCCcchhCCCCC
Confidence 4679999999999999984
No 66
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=79.16 E-value=0.43 Score=49.32 Aligned_cols=24 Identities=17% Similarity=0.685 Sum_probs=21.3
Q ss_pred CCCceeeccCCcccCCcccccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAET 71 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~ 71 (363)
.+..+.++.++|+.||.|+.+||+
T Consensus 136 ~~~~i~~d~~kCi~Cg~Cv~~CP~ 159 (574)
T 3c8y_A 136 RSKSLTVDRTKCLLCGRCVNACGK 159 (574)
T ss_dssp CSSSEEEEGGGCCCCCHHHHHHHH
T ss_pred CCCcceeCcccCcCCCCccchhCc
Confidence 345788999999999999999998
No 67
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=77.71 E-value=0.38 Score=43.79 Aligned_cols=21 Identities=19% Similarity=0.553 Sum_probs=18.8
Q ss_pred eccCCcccCCccccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~i 74 (363)
...+.|+.||.|+.+||..++
T Consensus 143 ~~~~~Ci~Cg~C~~~CP~~~~ 163 (243)
T 1kf6_B 143 HQFSGCINCGLCYAACPQFGL 163 (243)
T ss_dssp GGGGCCCCCCHHHHHCHHHHH
T ss_pred hhhhhccccCccccccCCCcc
Confidence 678899999999999998864
No 68
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=76.48 E-value=0.49 Score=52.07 Aligned_cols=23 Identities=13% Similarity=0.527 Sum_probs=12.5
Q ss_pred eeeccCCcccCCcccccccc-cccc
Q 017974 52 VKISLKDCLACSGCITSAET-VMLE 75 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~-~~i~ 75 (363)
..++ ++|+.||.|+.+||+ ++|+
T Consensus 980 ~~~~-~~C~~Cg~C~~~CP~~~Ai~ 1003 (1025)
T 1gte_A 980 PTVT-DTCTGCTLCLSVCPIIDCIR 1003 (1025)
T ss_dssp EEEC-TTCCCCCHHHHHCSSTTTEE
T ss_pred EEeC-ccCCChhHHHhhCCCCCCEE
Confidence 3444 556666666666665 5543
No 69
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=76.10 E-value=0.68 Score=50.95 Aligned_cols=30 Identities=13% Similarity=0.378 Sum_probs=24.6
Q ss_pred CCCceeeccCCcccCCcccccccc---cccccc
Q 017974 48 QAEPVKISLKDCLACSGCITSAET---VMLEKQ 77 (363)
Q Consensus 48 ~~~ka~I~~~dCi~Cg~Cit~c~~---~~i~~~ 77 (363)
....+.|+.+.|+.||.|+.+||. .+|..+
T Consensus 942 ~~~~~~id~~~C~~Cg~C~~~CP~~~~~ai~~~ 974 (1025)
T 1gte_A 942 EQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFD 974 (1025)
T ss_dssp SCEEEEECTTTCCCCCHHHHHHHHHSCSCEEEC
T ss_pred ccceEEEEcccCcccCHHHHhcCccccCCEEEe
Confidence 456788999999999999999996 666543
No 70
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=74.96 E-value=0.86 Score=41.83 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=17.9
Q ss_pred eccCCcccCCccccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~i 74 (363)
...+.|+.||.|+.+||...+
T Consensus 153 ~~~~~Ci~CG~C~~~CP~~~~ 173 (252)
T 2h88_B 153 DGLYECILCACCSTSCPSYWW 173 (252)
T ss_dssp TTTTTCCCCCTTGGGCHHHHH
T ss_pred HhHHhchhhCcchhhCCCCcc
Confidence 456799999999999998753
No 71
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=74.20 E-value=1.1 Score=40.10 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=23.3
Q ss_pred ccCCcccC------C---cccccccccccccccHHHHH
Q 017974 55 SLKDCLAC------S---GCITSAETVMLEKQSLDEFL 83 (363)
Q Consensus 55 ~~~dCi~C------g---~Cit~c~~~~i~~~~~~~~~ 83 (363)
..++|..| | .|+.+||+++|+..+.+++.
T Consensus 133 ~~~kC~~C~~~~~~G~~p~Cv~~CP~~Ai~~~~~~~~~ 170 (214)
T 1h0h_B 133 QMAKCDMCIDRITNGLRPACVTSCPTGAMNFGDLSEME 170 (214)
T ss_dssp CEECCCTTHHHHTTTCCCHHHHHCSSSCEEEEEHHHHH
T ss_pred ccCcCCCCcchhhcCCChhHHHhcCcccEEEccHHHHH
Confidence 46899999 5 89999999998866655543
No 72
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=73.95 E-value=0.5 Score=42.94 Aligned_cols=21 Identities=29% Similarity=0.835 Sum_probs=18.1
Q ss_pred eccCCcccCCccccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVML 74 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~i 74 (363)
...+.|+.||.|+.+||+.++
T Consensus 146 ~~~~~Ci~Cg~C~~~CP~~~~ 166 (241)
T 2bs2_B 146 FELDRCIECGCCIAACGTKIM 166 (241)
T ss_dssp HHHHTCCCCCHHHHTCHHHHH
T ss_pred hhhhhhhccCcCcccCCCCcc
Confidence 356799999999999999864
No 73
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=72.04 E-value=0.86 Score=48.73 Aligned_cols=21 Identities=24% Similarity=0.592 Sum_probs=18.5
Q ss_pred ceeeccCCcccCCcccccccc
Q 017974 51 PVKISLKDCLACSGCITSAET 71 (363)
Q Consensus 51 ka~I~~~dCi~Cg~Cit~c~~ 71 (363)
...++.++||.||.|+++|+.
T Consensus 173 ~i~~d~~~CI~C~~Cv~~C~~ 193 (783)
T 3i9v_3 173 FVILDRERCIHCKRCVRYFEE 193 (783)
T ss_dssp TEEECTTTCCCCCHHHHHHHH
T ss_pred cEEEchhhCCCccHHHHHhhh
Confidence 567789999999999999955
No 74
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=69.14 E-value=1.3 Score=40.65 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=16.9
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
....|+.||.|+.+||.++
T Consensus 211 ~~~~C~~Cg~C~~~CP~~i 229 (252)
T 2h88_B 211 SLYRCHTIMNCTRTCPKGL 229 (252)
T ss_dssp TTTTCCCCCHHHHHCTTCC
T ss_pred CCCcCccccchhhhcCCCC
Confidence 4579999999999999984
No 75
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=67.26 E-value=1.3 Score=40.15 Aligned_cols=20 Identities=10% Similarity=0.268 Sum_probs=17.6
Q ss_pred eccCCcccCCcccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~ 73 (363)
.....|+.||.|..+||.++
T Consensus 203 ~~~~~C~~Cg~C~~vCP~~i 222 (241)
T 2bs2_B 203 DGVFGCMTLLACHDVCPKNL 222 (241)
T ss_dssp TTGGGCCCCCHHHHHCTTCC
T ss_pred cCcccCcccChhhHhcCCCC
Confidence 45679999999999999984
No 76
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=64.59 E-value=1.3 Score=47.62 Aligned_cols=37 Identities=8% Similarity=0.233 Sum_probs=26.5
Q ss_pred eeeccCCcccCCcccccccccccccccHHHHHHhhcC
Q 017974 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINK 88 (363)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~~i~~~~~~~~~~~L~~ 88 (363)
+....+.|+.||.|+.+||+++...+.+.++.+.+..
T Consensus 448 ~~~~~~~Ci~Cg~C~~vCP~ga~~~~~i~~~r~~l~~ 484 (807)
T 3cf4_A 448 FEEIHDTCIGCRRCEQVCKKEIPILNVIEKIAQKQIA 484 (807)
T ss_dssp HHHHHHHCCCCCHHHHHCTTCCCHHHHHHHHTHHHHH
T ss_pred hhhchhhccchhhHHHhCCCCCChHHHHHHHHHHHHh
Confidence 3445678999999999999987655556666666543
No 77
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=63.85 E-value=2 Score=37.92 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=23.0
Q ss_pred ceeeccCCcccCC--cccccccccccccc
Q 017974 51 PVKISLKDCLACS--GCITSAETVMLEKQ 77 (363)
Q Consensus 51 ka~I~~~dCi~Cg--~Cit~c~~~~i~~~ 77 (363)
...+..+.|+.|| .|+.+||++++...
T Consensus 50 ~~~~~~~~C~~C~~p~C~~~CP~gAi~~~ 78 (195)
T 2vpz_B 50 VVEFRPEQCLHCENPPCVPVCPTGASYQT 78 (195)
T ss_dssp EEEEEEEECCCCSSCTTTTTCSSSCEEEC
T ss_pred eEEECcccCcCccCcHHHHhcCCCceecc
Confidence 4677889999999 79999999987654
No 78
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=61.55 E-value=1.8 Score=42.08 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.1
Q ss_pred ceeeccCCcccCC--cccccccccccccc
Q 017974 51 PVKISLKDCLACS--GCITSAETVMLEKQ 77 (363)
Q Consensus 51 ka~I~~~dCi~Cg--~Cit~c~~~~i~~~ 77 (363)
.+.+..+.|++|+ .|+.+||++++...
T Consensus 143 ~~~~~~~~C~~C~~~~Cv~~CP~gAi~~~ 171 (352)
T 2ivf_B 143 FFFYLARMCNHCTNPACLAACPTGAIYKR 171 (352)
T ss_dssp ECEEEEECCCCCSSCHHHHHCTTCCEEEC
T ss_pred EEEECCCCCcCcCCccccccCCCCceeec
Confidence 5678889999999 89999999987643
No 79
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=60.10 E-value=2.2 Score=40.22 Aligned_cols=18 Identities=28% Similarity=0.744 Sum_probs=15.8
Q ss_pred cCCcccCCcccccccccc
Q 017974 56 LKDCLACSGCITSAETVM 73 (363)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~~ 73 (363)
...||.||-|..+||...
T Consensus 179 ~~~CI~CG~C~~aCP~~~ 196 (282)
T 3vr8_B 179 LYECILCACCSASCPSYW 196 (282)
T ss_pred hhhCcccCcCcccCCcee
Confidence 467999999999999874
No 80
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=56.18 E-value=1.9 Score=40.33 Aligned_cols=46 Identities=9% Similarity=0.193 Sum_probs=30.8
Q ss_pred CCCCccccccCCCceeeccCCcccC----------C---cccccccccccccccHH--HHHHhh
Q 017974 38 KPQVSTSSKQQAEPVKISLKDCLAC----------S---GCITSAETVMLEKQSLD--EFLSNI 86 (363)
Q Consensus 38 ~~~~~~~~~~~~~ka~I~~~dCi~C----------g---~Cit~c~~~~i~~~~~~--~~~~~L 86 (363)
.|+..++..... ....++|..| | .|+.+||+++|.-.+.. ++.+.+
T Consensus 108 ~CP~~Ai~~~~~---~~~~~kC~~C~~r~~~~~~~G~~P~Cv~~CP~~Ai~~~~~~dp~v~~~~ 168 (274)
T 1ti6_B 108 TCPYGVMYWNEE---ENVAQKCTMCAHLLDDESWAPKMPRCAHNCGSFVYEFLKTTPEAMAKKV 168 (274)
T ss_dssp GCSSCCCEEETT---TTEEECCCTTHHHHTCTTCTTCSCHHHHHCSSCCEEEEEECHHHHHHHH
T ss_pred hCccCCeEEEcc---cCccccCCCchhhhhhhccCCCCcchhhhCCcCceEEcCCCcHHHHHHH
Confidence 366666653222 2356899999 9 99999999988754433 454444
No 81
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=55.89 E-value=13 Score=27.83 Aligned_cols=49 Identities=24% Similarity=0.460 Sum_probs=38.6
Q ss_pred HHHHHHhhcCCCeEEEEeCcchhhHHhhHhCCChHHHHHHHHHHHHHcCCeEEEec
Q 017974 79 LDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDT 134 (363)
Q Consensus 79 ~~~~~~~L~~~k~~V~sisP~~~~sl~~~f~~~~~~~~~~l~~~Lk~LGf~~V~Dt 134 (363)
+.+|.+.|+..|. +.+. .++++|+++..+...+|..+...=...-|+|-
T Consensus 9 l~~Fi~yIk~~Kv--v~Le-----dLA~~F~l~t~~~i~RI~~Le~~g~ltGViDD 57 (72)
T 1wi9_A 9 LTEFINYIKKSKV--VLLE-----DLAFQMGLRTQDAINRIQDLLTEGTLTGVIDD 57 (72)
T ss_dssp HHHHHHHHHHCSE--ECHH-----HHHHHHCSCHHHHHHHHHHHHHHSSSCEEECT
T ss_pred HHHHHHHHHHcCe--eeHH-----HHHHHhCCChHHHHHHHHHHHHCCCeEEEEeC
Confidence 6788999998664 4444 59999999988888899888877777777774
No 82
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=47.84 E-value=5.9 Score=37.21 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=17.0
Q ss_pred ccCCcccCCcccccccccc
Q 017974 55 SLKDCLACSGCITSAETVM 73 (363)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~~ 73 (363)
....|..||.|..+||.++
T Consensus 235 ~l~~C~~Cg~C~~vCP~gI 253 (282)
T 3vr8_B 235 SAFKCHTIMNCTKTCPKHL 253 (282)
T ss_pred CcccChhhCCccccCcCCC
Confidence 4689999999999999884
No 83
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=46.37 E-value=4.7 Score=41.12 Aligned_cols=27 Identities=15% Similarity=0.312 Sum_probs=23.2
Q ss_pred CceeeccCCcccCC--ccccccccccccc
Q 017974 50 EPVKISLKDCLACS--GCITSAETVMLEK 76 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg--~Cit~c~~~~i~~ 76 (363)
....+..+.|+.|+ .|+.+||+++|..
T Consensus 175 ~~i~~~~~~C~~C~~~~Cv~aCP~gAI~~ 203 (512)
T 1q16_B 175 TFMMYLPRLCEHCLNPACVATCPSGAIYK 203 (512)
T ss_dssp CCCEEEEECCCCCSSCHHHHTCTTCCEEE
T ss_pred ceEEecCccCcCCCCchhhhhCCcCcEEe
Confidence 45778899999999 5999999998764
No 84
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=39.31 E-value=4.7 Score=43.38 Aligned_cols=20 Identities=15% Similarity=0.579 Sum_probs=17.4
Q ss_pred eccCCcccCCcccccccccc
Q 017974 54 ISLKDCLACSGCITSAETVM 73 (363)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~~ 73 (363)
...+.|+.||.|+.+||+.+
T Consensus 412 ~~~~~Ci~CG~C~~~CP~~~ 431 (807)
T 3cf4_A 412 NMVAKCADCGACLLACPEEI 431 (807)
T ss_dssp HHHHHCCCCCHHHHHCTTCC
T ss_pred HhHHhCCCCCchhhhCCCCC
Confidence 35688999999999999985
No 85
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=33.11 E-value=10 Score=37.43 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=26.7
Q ss_pred CceeeccCCcccCCc--cccccccc--------ccccccHHHHHHhhcC
Q 017974 50 EPVKISLKDCLACSG--CITSAETV--------MLEKQSLDEFLSNINK 88 (363)
Q Consensus 50 ~ka~I~~~dCi~Cg~--Cit~c~~~--------~i~~~~~~~~~~~L~~ 88 (363)
..+.--.++|+.||- |...||.+ ++.+.++.+-++.|.+
T Consensus 13 ~~~~~~a~rc~~c~~~~C~~~CP~~~~i~~~~~~~~~g~~~~A~~~~~~ 61 (456)
T 2vdc_G 13 ERANEQANRCSQCGVPFCQVHCPVSNNIPDWLKLTSEGRLEEAYEVSQA 61 (456)
T ss_dssp TTHHHHHHHSCCCSSCHHHHTSTTCCCHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCchhhcCCCCCCcHHHHHHHHHCCCHHHHHHHHHh
Confidence 456666789999997 99999987 2334455555555543
No 86
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=27.11 E-value=21 Score=24.59 Aligned_cols=20 Identities=20% Similarity=0.664 Sum_probs=14.6
Q ss_pred CCceeeccCCcccCCccccc
Q 017974 49 AEPVKISLKDCLACSGCITS 68 (363)
Q Consensus 49 ~~ka~I~~~dCi~Cg~Cit~ 68 (363)
+..-+-++++|+.|+.|-..
T Consensus 12 GsswS~DLdKCmdcs~C~~~ 31 (53)
T 2kmz_A 12 GSSWSADLDKCMDCASCRAR 31 (53)
T ss_dssp SCBCCTTTTCCBCSTTCSSC
T ss_pred CcccchhhhhhhccccCCCC
Confidence 33445678999999998653
No 87
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=22.12 E-value=8.8 Score=37.12 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=21.4
Q ss_pred CceeeccCCc-ccC--Ccccccccccccccc
Q 017974 50 EPVKISLKDC-LAC--SGCITSAETVMLEKQ 77 (363)
Q Consensus 50 ~ka~I~~~dC-i~C--g~Cit~c~~~~i~~~ 77 (363)
....|+.+.| ..| +.|+.+||+++|...
T Consensus 198 ~~p~id~~~c~~~Ce~~~Cv~~CP~~AI~~~ 228 (366)
T 3mm5_B 198 TPPIPNDEAIRKTCEIPSTVAACPTGALKPD 228 (366)
T ss_dssp SCCCCCHHHHHHHCCHHHHHHTCTTCCEEEE
T ss_pred cceEEcchhccccccccchhccCCccceEec
Confidence 4566777777 356 999999999998754
No 88
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=21.11 E-value=39 Score=28.67 Aligned_cols=36 Identities=19% Similarity=0.407 Sum_probs=26.4
Q ss_pred CCeEEEEeCcchhhHHhhHhCCChHHH-HHHHHHHHHHcCCe
Q 017974 89 GKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVK 129 (363)
Q Consensus 89 ~k~~V~sisP~~~~sl~~~f~~~~~~~-~~~l~~~Lk~LGf~ 129 (363)
++.+-+++||+ ++...+++ .++ ...+..||+++||.
T Consensus 119 GRiLtas~SPs---~~iHk~~i--e~~v~~E~~~AL~RiG~~ 155 (156)
T 3brc_A 119 GRLLSAAMSPP---HVIHSMEV--REAVRSEMTHALERIGFK 155 (156)
T ss_dssp SCEEEEEEECC---TTTSCCCH--HHHHHHHHHHHHHTTTCC
T ss_pred CcEEeeccCch---hhhhcccH--HHHHHHHHHHHHHHhCcC
Confidence 47888999997 45545443 333 37899999999996
Done!