BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017975
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 167 ISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
I +NEI+ L P RL+TLL+ N I I E Q+LP L L L+ N+ L EL
Sbjct: 47 IDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT-NNSLVEL 103
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEIT 200
++L G L D ++E + + L N++QSLP L+ L+L N ++ +
Sbjct: 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 201 ESFFQSLPSLRVLNLSVNHYLTELPVGI 228
+ F L +L LNL+ N L LP G+
Sbjct: 126 DGVFDKLTNLTYLNLAHNQ-LQSLPKGV 152
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 167 ISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP 225
++ E + S+P IPT Q L L N I ++ F SL L LNL+VN LT LP
Sbjct: 24 VNCQERSLASVPAGIPT--TTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQ-LTALP 80
Query: 226 VGI 228
VG+
Sbjct: 81 VGV 83
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 185 RLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
L +LLL +NH+ I+ F +P+LR L+LS NH T
Sbjct: 65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 169 LMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN 218
L N++ SLP+ P+L TL + N++E I + FQ+ SL+ L LS N
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 151 GLTDAPKIEEWEGVKRISLMENEIQSLPQIP--TCPRLQTLLLEYNHIEEITESFFQSLP 208
LTD + + G+ + L NE++ + P RL+ L + N + + + Q +P
Sbjct: 243 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIP 301
Query: 209 SLRVLNLSVNHYL 221
+L+VL+LS NH L
Sbjct: 302 TLKVLDLSHNHLL 314
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEIT 200
++L G L D ++E + + L N++QSLP L+ L+L N ++ +
Sbjct: 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 201 ESFFQSLPSLRVLNLSVNHYLTELPVGI 228
+ F L +L L L N L LP G+
Sbjct: 126 DGVFDKLTNLTYLYLYHNQ-LQSLPKGV 152
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 169 LMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN 218
L N++ SLP+ P+L TL + N++E I + FQ+ SL+ L LS N
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 151 GLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCP--RLQTLLLEYNHIEEITESFFQSLP 208
LTD + + G+ + L NE++ + P RL+ L + N + + + Q +P
Sbjct: 237 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIP 295
Query: 209 SLRVLNLSVNHYL 221
+L+VL+LS NH L
Sbjct: 296 TLKVLDLSHNHLL 308
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 148 AGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSL 207
A L+D + G+ +++ E++++ + I L +L L YN IE+I S SL
Sbjct: 141 ANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI--SPLASL 198
Query: 208 PSLRVLNLSVNHYLTELPVG 227
SL VN PV
Sbjct: 199 TSLHYFTAYVNQITDITPVA 218
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 185 RLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI 228
+L+ L L YNHI + + F LP+L+ L L N L +P GI
Sbjct: 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGI 390
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 164 VKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
+ ++SL +N+IQSLP +L L L N ++ + F L L+ L L N L
Sbjct: 54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-L 112
Query: 222 TELPVGI 228
+P GI
Sbjct: 113 KSVPDGI 119
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 129 DMALWIANEIEEEEKF-------LVRAGVGLTDA--PKIEEWEGVKRIS-----LMENEI 174
D+ +N I + + F ++ AG G + P + G+ R S L +
Sbjct: 219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278
Query: 175 QSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN 218
SL T L+ L L YN I +I + F L +L+VLNLS N
Sbjct: 279 FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 158 IEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNL 215
E + +K ++L N+I + LQ L L YN + E+ S F LP + ++L
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345
Query: 216 SVNH 219
NH
Sbjct: 346 QKNH 349
>pdb|3EDV|A Chain A, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
pdb|3EDV|B Chain B, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
Length = 323
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 72/197 (36%), Gaps = 41/197 (20%)
Query: 22 KEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSEI 81
K+ PEE R + T E + + L L D R Y +D +
Sbjct: 134 KKLPEELGRDQNTVETLQRMHTTFEHDIQA-LGTQVRQLQEDAARLQAAYAGDKADDIQK 192
Query: 82 RKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGGDHVKMHDMIRDMALWIAN---EI 138
R+ +++ W+S LLD+ R L + GD + M+RD+ LW+ + +I
Sbjct: 193 RENEVLEAWKS--LLDACES--------RRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQI 242
Query: 139 EEEEKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--------QIPTCPRLQTLL 190
E +EK P+ V + L+ N Q + TC L L
Sbjct: 243 EAQEK------------PR-----DVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSL 285
Query: 191 LEYNHI--EEITESFFQ 205
L H EEI E Q
Sbjct: 286 LARKHYASEEIKEKLLQ 302
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 149 GVGLTDAPK-IEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQ 205
G T PK + ++ + I L N I +L +L TL+L YN + I F
Sbjct: 40 GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99
Query: 206 SLPSLRVLNLSVN 218
L SLR+L+L N
Sbjct: 100 GLKSLRLLSLHGN 112
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 160 EWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNL 215
+W + ++ L N + + P L+ L LEYN+I+ ++ F L +LR L+L
Sbjct: 246 KWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
>pdb|3G04|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
pdb|2XWT|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Blocking Type Tshr Autoantibody
Length = 239
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 173 EIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
+IQ +P +P P QTL L H+ I F +LP++ + +S++ L +L
Sbjct: 22 DIQRIPSLP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 186 LQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
L+ L L YN++ ++ S+F+ L SL LNL N Y T
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 186 LQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
L+ L L YN++ ++ S+F+ L SL LNL N Y T
Sbjct: 76 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 112
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 170 MENEIQSLPQIPTCPRLQTLLLEYNHIEEITESF 203
+ N+++ L T +L L L+YN IEEI E F
Sbjct: 581 VHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDF 614
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 316 NITQALHIKDCNSLPLN---LLHLANMEHLQLFSIWDSNLEDWNVD 358
N QAL KDC + +N L+H E +Q F + S ++ W++D
Sbjct: 379 NFFQALDFKDCADIVINDLSLIHQLPREEIQTF-CYPSMIQKWSLD 423
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 316 NITQALHIKDCNSLPLN---LLHLANMEHLQLFSIWDSNLEDWNVD 358
N QAL KDC + N L+H E +Q F + S ++ W++D
Sbjct: 379 NFFQALKFKDCADIVFNDLSLIHQLPKEEIQSF-CYPSMIQKWSLD 423
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 151 GLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSL 210
+TDA E + +I ++I+S+ I P L +L L N I +I S Q LP++
Sbjct: 33 SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNLTSLNLSNNQITDI--SPIQYLPNV 90
Query: 211 RVLNLSVN 218
L L+ N
Sbjct: 91 TKLFLNGN 98
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 163 GVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLP-SLRVLNLSVNHYL 221
++ +++ N++ LP +P PRL+ L+ +NH+ E+ E LP +L+ L++ N L
Sbjct: 318 SLEELNVSNNKLIELPALP--PRLERLIASFNHLAEVPE-----LPQNLKQLHVEYNP-L 369
Query: 222 TELPVGIXXXXXXXXXXXXXTKVRGLPQELKAL 254
E P I +V LPQ LK L
Sbjct: 370 REFP-DIPESVEDLRMNSHLAEVPELPQNLKQL 401
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQS 206
LT PK+E ++SL N++ LP + L TLLL+ N + I + FF S
Sbjct: 144 LTPTPKLE------KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQS 206
LT PK+E ++SL N++ LP + L TLLL+ N + I + FF S
Sbjct: 144 LTPTPKLE------KLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQS 206
LT PK+E ++SL N++ LP + L TLLL+ N + I + FF S
Sbjct: 144 LTPTPKLE------KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQS 206
LT PK+E ++SL N++ LP + L TLLL+ N + I + FF S
Sbjct: 144 LTPTPKLE------KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 186 LQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
L+ L L NH+ ++ S+F L SL+ LNL N Y T
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112
>pdb|3RPX|A Chain A, Crystal Structure Of Complement Component 1, Q
Subcomponent Binding Protein, C1qbp
pdb|3RPX|B Chain B, Crystal Structure Of Complement Component 1, Q
Subcomponent Binding Protein, C1qbp
pdb|3RPX|C Chain C, Crystal Structure Of Complement Component 1, Q
Subcomponent Binding Protein, C1qbp
Length = 194
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 37 TSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPED 78
+ K E+ E ++ S F + + ND+ + L+ C +PED
Sbjct: 55 SQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPED 96
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 186 LQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
L+ L L NH+ ++ S+F L SL+ LNL N Y T
Sbjct: 102 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 138
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQS 206
LT PK+E ++SL N++ LP + L TLLL+ N + I + FF S
Sbjct: 144 LTPTPKLE------KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,417,922
Number of Sequences: 62578
Number of extensions: 401078
Number of successful extensions: 1175
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1081
Number of HSP's gapped (non-prelim): 105
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)