Query 017975
Match_columns 363
No_of_seqs 413 out of 2435
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:04:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.3E-53 2.8E-58 424.6 19.4 356 1-358 348-735 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.7E-38 5.8E-43 329.7 22.7 256 1-271 381-699 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.7 3.5E-19 7.5E-24 160.1 0.9 98 1-99 188-285 (287)
4 PLN00113 leucine-rich repeat r 99.7 6.1E-17 1.3E-21 168.9 11.8 191 162-357 140-349 (968)
5 PLN00113 leucine-rich repeat r 99.7 5.7E-17 1.2E-21 169.1 11.1 195 160-359 116-327 (968)
6 KOG0617 Ras suppressor protein 99.7 4.9E-19 1.1E-23 139.2 -4.1 159 151-327 22-184 (264)
7 KOG0617 Ras suppressor protein 99.7 9.8E-19 2.1E-23 137.5 -3.2 171 173-360 22-193 (264)
8 KOG0472 Leucine-rich repeat pr 99.6 9.3E-18 2E-22 148.2 -2.2 111 156-267 200-310 (565)
9 KOG0444 Cytoskeletal regulator 99.6 5.9E-17 1.3E-21 150.5 1.2 202 156-359 97-381 (1255)
10 KOG0444 Cytoskeletal regulator 99.6 3.8E-17 8.2E-22 151.7 -0.4 127 143-271 35-167 (1255)
11 PLN03210 Resistant to P. syrin 99.6 2.5E-14 5.4E-19 150.5 13.1 207 143-358 592-843 (1153)
12 KOG4194 Membrane glycoprotein 99.5 4E-15 8.7E-20 137.4 1.4 207 148-359 205-435 (873)
13 KOG4194 Membrane glycoprotein 99.5 1.1E-14 2.5E-19 134.4 3.7 209 144-358 106-335 (873)
14 PRK15387 E3 ubiquitin-protein 99.5 1.7E-13 3.6E-18 135.5 12.1 217 130-358 190-463 (788)
15 KOG4237 Extracellular matrix p 99.4 2E-14 4.4E-19 127.0 -1.2 212 142-359 48-341 (498)
16 PRK15370 E3 ubiquitin-protein 99.4 2E-12 4.3E-17 128.5 12.5 190 143-354 181-381 (754)
17 KOG0472 Leucine-rich repeat pr 99.4 5.3E-15 1.1E-19 131.0 -5.9 186 158-353 110-310 (565)
18 KOG0618 Serine/threonine phosp 99.4 8.7E-14 1.9E-18 134.8 0.2 130 204-350 379-510 (1081)
19 PRK15370 E3 ubiquitin-protein 99.3 7.8E-12 1.7E-16 124.3 8.6 147 143-300 202-359 (754)
20 KOG0618 Serine/threonine phosp 99.2 1.9E-12 4.1E-17 125.7 -0.6 175 162-352 241-419 (1081)
21 KOG0532 Leucine-rich repeat (L 99.2 8.9E-13 1.9E-17 121.7 -3.6 176 161-358 74-251 (722)
22 COG4886 Leucine-rich repeat (L 99.1 9.6E-11 2.1E-15 110.2 7.2 185 155-359 109-296 (394)
23 PF14580 LRR_9: Leucine-rich r 99.1 3.8E-11 8.2E-16 98.1 3.5 127 160-295 17-148 (175)
24 KOG4658 Apoptotic ATPase [Sign 99.1 9.5E-11 2.1E-15 118.5 6.3 211 144-358 527-788 (889)
25 PRK15387 E3 ubiquitin-protein 99.1 3.7E-10 8E-15 112.1 10.1 177 162-354 201-416 (788)
26 PF14580 LRR_9: Leucine-rich r 99.0 2.8E-10 6E-15 93.1 4.9 119 141-260 20-146 (175)
27 KOG0532 Leucine-rich repeat (L 99.0 3.3E-11 7.2E-16 111.5 -3.6 157 156-327 115-271 (722)
28 KOG1259 Nischarin, modulator o 98.9 8.3E-11 1.8E-15 101.0 -1.5 133 158-302 280-414 (490)
29 cd00116 LRR_RI Leucine-rich re 98.9 1.6E-10 3.5E-15 105.3 -1.0 188 161-355 80-293 (319)
30 cd00116 LRR_RI Leucine-rich re 98.9 4.2E-10 9.1E-15 102.5 0.1 182 162-353 51-263 (319)
31 KOG1259 Nischarin, modulator o 98.9 5.3E-10 1.2E-14 96.1 0.5 127 183-327 283-410 (490)
32 COG4886 Leucine-rich repeat (L 98.8 2.9E-09 6.2E-14 100.2 3.7 165 144-327 120-288 (394)
33 KOG4237 Extracellular matrix p 98.8 2.5E-10 5.4E-15 101.5 -3.3 199 141-353 68-359 (498)
34 PF13855 LRR_8: Leucine rich r 98.8 5.9E-09 1.3E-13 70.1 4.1 60 184-244 1-61 (61)
35 KOG3207 Beta-tubulin folding c 98.7 1.2E-08 2.5E-13 92.1 3.5 181 160-354 144-340 (505)
36 KOG0531 Protein phosphatase 1, 98.7 1E-08 2.2E-13 96.9 2.6 175 158-353 91-268 (414)
37 PF13855 LRR_8: Leucine rich r 98.6 7.5E-08 1.6E-12 64.7 4.2 58 162-219 1-60 (61)
38 PLN03150 hypothetical protein; 98.5 1.5E-07 3.2E-12 93.3 7.0 81 186-266 420-502 (623)
39 KOG3207 Beta-tubulin folding c 98.5 3E-08 6.4E-13 89.6 1.5 180 159-355 118-316 (505)
40 PLN03150 hypothetical protein; 98.5 2E-07 4.4E-12 92.3 6.5 90 164-253 420-512 (623)
41 PRK15386 type III secretion pr 98.5 3.7E-07 7.9E-12 83.9 7.2 84 160-254 50-137 (426)
42 KOG1859 Leucine-rich repeat pr 98.4 1.4E-08 3E-13 97.1 -3.9 162 148-327 95-290 (1096)
43 KOG2120 SCF ubiquitin ligase, 98.4 8.6E-09 1.9E-13 88.7 -5.0 181 162-352 185-375 (419)
44 PF12799 LRR_4: Leucine Rich r 98.4 4.8E-07 1E-11 56.0 3.9 39 209-248 2-40 (44)
45 KOG4579 Leucine-rich repeat (L 98.3 9.6E-08 2.1E-12 73.1 -0.5 107 163-270 28-139 (177)
46 KOG0531 Protein phosphatase 1, 98.2 3.6E-07 7.7E-12 86.4 -0.0 124 143-270 98-224 (414)
47 PF12799 LRR_4: Leucine Rich r 98.1 6E-06 1.3E-10 51.0 4.1 40 184-225 1-40 (44)
48 PRK15386 type III secretion pr 98.0 2.5E-05 5.3E-10 72.1 8.0 83 180-270 48-131 (426)
49 KOG2982 Uncharacterized conser 97.9 8.6E-06 1.9E-10 70.6 4.1 68 286-357 198-266 (418)
50 KOG1859 Leucine-rich repeat pr 97.9 3.4E-07 7.4E-12 87.8 -5.1 130 159-300 161-292 (1096)
51 KOG4579 Leucine-rich repeat (L 97.8 3.6E-06 7.9E-11 64.6 -0.5 88 162-251 53-142 (177)
52 KOG1644 U2-associated snRNP A' 97.7 6.7E-05 1.4E-09 61.6 5.7 85 163-248 43-129 (233)
53 KOG2982 Uncharacterized conser 97.7 7.9E-06 1.7E-10 70.8 -0.4 183 162-348 71-287 (418)
54 KOG1909 Ran GTPase-activating 97.5 7.2E-06 1.5E-10 72.5 -2.9 185 162-352 92-310 (382)
55 KOG3665 ZYG-1-like serine/thre 97.4 3E-05 6.5E-10 77.1 -0.6 87 205-300 145-233 (699)
56 KOG1909 Ran GTPase-activating 97.3 1.7E-05 3.7E-10 70.2 -3.5 192 159-354 27-284 (382)
57 KOG3665 ZYG-1-like serine/thre 96.9 0.00062 1.3E-08 68.0 3.0 81 161-244 147-232 (699)
58 KOG1644 U2-associated snRNP A' 96.9 0.00084 1.8E-08 55.3 3.1 129 164-301 21-154 (233)
59 PF00560 LRR_1: Leucine Rich R 96.8 0.0004 8.7E-09 35.8 0.5 19 234-252 2-20 (22)
60 KOG2739 Leucine-rich acidic nu 96.6 0.0011 2.5E-08 56.7 2.1 85 160-247 41-131 (260)
61 KOG2739 Leucine-rich acidic nu 96.5 0.0017 3.7E-08 55.6 2.2 59 185-245 44-104 (260)
62 KOG2123 Uncharacterized conser 96.4 0.00042 9.1E-09 59.8 -1.6 95 144-238 23-123 (388)
63 PF00560 LRR_1: Leucine Rich R 96.3 0.0017 3.7E-08 33.4 1.0 21 209-230 1-21 (22)
64 KOG2120 SCF ubiquitin ligase, 96.3 0.00017 3.6E-09 62.8 -4.8 160 184-353 185-351 (419)
65 COG5238 RNA1 Ran GTPase-activa 96.2 0.00068 1.5E-08 58.4 -1.7 188 160-354 28-256 (388)
66 PF13504 LRR_7: Leucine rich r 96.0 0.0047 1E-07 29.5 1.5 16 233-248 2-17 (17)
67 KOG2123 Uncharacterized conser 95.3 0.0014 3.1E-08 56.6 -3.2 89 205-304 16-105 (388)
68 smart00370 LRR Leucine-rich re 94.7 0.028 6.1E-07 30.0 2.1 22 231-252 1-22 (26)
69 smart00369 LRR_TYP Leucine-ric 94.7 0.028 6.1E-07 30.0 2.1 22 231-252 1-22 (26)
70 COG5238 RNA1 Ran GTPase-activa 94.7 0.0085 1.8E-07 51.8 0.0 141 178-327 86-253 (388)
71 PF13504 LRR_7: Leucine rich r 94.5 0.028 6.1E-07 26.7 1.5 16 209-225 2-17 (17)
72 KOG0473 Leucine-rich repeat pr 94.3 0.0019 4E-08 54.5 -4.8 85 204-299 38-123 (326)
73 PF13306 LRR_5: Leucine rich r 93.5 0.26 5.5E-06 37.9 6.2 83 162-249 12-97 (129)
74 KOG0473 Leucine-rich repeat pr 93.0 0.0028 6.1E-08 53.5 -5.9 87 157-245 37-124 (326)
75 smart00369 LRR_TYP Leucine-ric 91.5 0.17 3.7E-06 26.9 2.0 20 184-203 2-21 (26)
76 smart00370 LRR Leucine-rich re 91.5 0.17 3.7E-06 26.9 2.0 20 184-203 2-21 (26)
77 PRK04841 transcriptional regul 91.5 0.71 1.5E-05 48.5 8.3 117 1-135 211-332 (903)
78 KOG3864 Uncharacterized conser 89.1 0.057 1.2E-06 44.8 -1.8 45 307-351 142-187 (221)
79 smart00364 LRR_BAC Leucine-ric 87.9 0.33 7.1E-06 25.9 1.2 18 232-249 2-19 (26)
80 PF13306 LRR_5: Leucine rich r 87.8 1.6 3.5E-05 33.4 5.7 86 158-249 31-119 (129)
81 KOG4341 F-box protein containi 81.3 0.37 8E-06 44.5 -0.7 69 284-352 369-438 (483)
82 smart00365 LRR_SD22 Leucine-ri 79.1 1.7 3.6E-05 23.2 1.7 17 231-247 1-17 (26)
83 KOG3864 Uncharacterized conser 78.3 1.1 2.4E-05 37.4 1.2 60 186-245 103-165 (221)
84 PF13516 LRR_6: Leucine Rich r 70.7 2.2 4.8E-05 21.9 0.8 14 232-245 2-15 (24)
85 KOG1947 Leucine rich repeat pr 66.5 1.5 3.3E-05 42.0 -0.7 36 206-241 186-223 (482)
86 smart00368 LRR_RI Leucine rich 60.8 7.2 0.00016 21.0 1.7 14 232-245 2-15 (28)
87 smart00367 LRR_CC Leucine-rich 59.3 7.4 0.00016 20.4 1.5 10 233-242 3-12 (26)
88 KOG4308 LRR-containing protein 54.2 0.17 3.8E-06 48.6 -9.3 185 163-354 88-304 (478)
89 KOG1947 Leucine rich repeat pr 49.7 8.6 0.00019 36.8 1.4 85 159-243 211-306 (482)
90 KOG3763 mRNA export factor TAP 38.9 19 0.00041 34.9 1.8 36 183-218 217-254 (585)
91 PF11569 Homez: Homeodomain le 28.8 70 0.0015 20.7 2.6 35 77-115 4-38 (56)
92 TIGR00635 ruvB Holliday juncti 24.1 1.6E+02 0.0035 26.3 5.2 63 48-116 224-288 (305)
93 PRK00080 ruvB Holliday junctio 23.4 39 0.00085 30.8 1.1 63 48-116 245-309 (328)
94 TIGR00864 PCC polycystin catio 22.5 57 0.0012 38.3 2.2 28 191-218 2-29 (2740)
95 KOG3763 mRNA export factor TAP 22.2 28 0.00061 33.8 -0.1 13 342-354 272-284 (585)
96 PF14050 Nudc_N: N-terminal co 20.4 64 0.0014 21.4 1.3 24 1-24 10-33 (62)
97 PF15385 SARG: Specifically an 20.3 51 0.0011 31.9 1.2 16 56-72 7-22 (497)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-53 Score=424.62 Aligned_cols=356 Identities=41% Similarity=0.720 Sum_probs=300.8
Q ss_pred CccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhcc-ccccccchHHHHHHHHhhcCCCCChhhhHHHhHhcCCCCCc
Q 017975 1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTS-ASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDS 79 (363)
Q Consensus 1 Iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~-~~~~~~~~~~i~~~L~~sy~~L~~~~lk~cfl~~s~Fp~~~ 79 (363)
||++|+|+|||++|+|+.|+.|++..+|+++.+.+.+. ..+++++.+.|+++|++|||.||+ ++|.||+|||+||+||
T Consensus 348 v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~ 426 (889)
T KOG4658|consen 348 VAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDY 426 (889)
T ss_pred HHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCccc
Confidence 58999999999999999999999999999999999887 666667778999999999999996 9999999999999999
Q ss_pred ccChHHHHHHHHHhCCccCcC--------HHHHHHHHHHhhcccCCC-----CceeechhHHHHHHHHhhhh-cccceeE
Q 017975 80 EIRKTDLIVYWESEGLLDSIG--------GWDVLGALVRACLLEEGG-----DHVKMHDMIRDMALWIANEI-EEEEKFL 145 (363)
Q Consensus 80 ~~~~~~li~~w~a~g~~~~~~--------~~~~~~~L~~rsli~~~~-----~~~~mhdl~~~~~~~i~~~~-~~~~~~~ 145 (363)
.|++++||..|+||||+.... |+.|+++|+++++++.+. .+|+|||+|+|||.+++.+. ..+++.+
T Consensus 427 ~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~i 506 (889)
T KOG4658|consen 427 EIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQI 506 (889)
T ss_pred ccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceE
Confidence 999999999999999998732 999999999999999844 89999999999999999866 4455677
Q ss_pred EecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCC--ccccchHHhcCCCCCCEEEcccCCCccc
Q 017975 146 VRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNH--IEEITESFFQSLPSLRVLNLSVNHYLTE 223 (363)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~--l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 223 (363)
+..+.+....|....+..+|++++.+|.+..++.-...++|++|-+.+|. +..++..+|..++.|++|||++|..+.+
T Consensus 507 v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 507 VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred EECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence 77766777788888999999999999999999888888899999999996 7888888899999999999999999999
Q ss_pred cCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCc-cCcCCC-----CCCCCC--------Ccccchhhhcc
Q 017975 224 LPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNH-WPIAEE-----GNVLSD--------DAESLMKEIHC 288 (363)
Q Consensus 224 lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~-l~~lp~-----~~l~~l--------~~~~~l~~l~~ 288 (363)
+|++|++|.+||||+++++.++.+|.++.+|+ |.+|++..+. +..+|. .+|..+ .....++++.+
T Consensus 587 LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~ 666 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELEN 666 (889)
T ss_pred CChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhc
Confidence 99999999999999999999999999999999 9998888654 333333 233332 12234566777
Q ss_pred ccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975 289 LEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD 358 (363)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 358 (363)
|++|....+...+......+..++.+....+.+.+.+| ..+..+.++..+.+|+.|.+.+|...+...+
T Consensus 667 Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~-~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~ 735 (889)
T KOG4658|consen 667 LEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC-SKRTLISSLGSLGNLEELSILDCGISEIVIE 735 (889)
T ss_pred ccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc-ccceeecccccccCcceEEEEcCCCchhhcc
Confidence 77777777765554333456677777777777777553 3455577899999999999999999765443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.7e-38 Score=329.73 Aligned_cols=256 Identities=23% Similarity=0.317 Sum_probs=194.7
Q ss_pred CccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccccccccchHHHHHHHHhhcCCCCChhhhHHHhHhcCCCCCcc
Q 017975 1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSE 80 (363)
Q Consensus 1 Iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~lk~cfl~~s~Fp~~~~ 80 (363)
||++|+|+||||+++|++|++ ++.++|+++++++++.+. ++|.++|++||++|+++..|.||+||||||.++.
T Consensus 381 iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~~------~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~ 453 (1153)
T PLN03210 381 VALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGLD------GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEK 453 (1153)
T ss_pred HHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCcc------HHHHHHHHHhhhccCccchhhhhheehhhcCCCC
Confidence 589999999999999999999 688999999999987554 3899999999999987359999999999999875
Q ss_pred cChHHHHHHHHHhCCccCcCHHHHHHHHHHhhcccCCCCceeechhHHHHHHHHhhhhc---ccceeEEecC--------
Q 017975 81 IRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGGDHVKMHDMIRDMALWIANEIE---EEEKFLVRAG-------- 149 (363)
Q Consensus 81 ~~~~~li~~w~a~g~~~~~~~~~~~~~L~~rsli~~~~~~~~mhdl~~~~~~~i~~~~~---~~~~~~~~~~-------- 149 (363)
++ .+..|.|.+.... ..-++.|+++|||++..+.++|||++|+||+++++++. .++.+++...
T Consensus 454 ~~---~v~~~l~~~~~~~---~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~ 527 (1153)
T PLN03210 454 VN---DIKLLLANSDLDV---NIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLED 527 (1153)
T ss_pred HH---HHHHHHHhcCCCc---hhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHh
Confidence 43 3566777765543 22399999999999988899999999999999987652 2222222110
Q ss_pred -C-------------CCC---------------------------------CCc-cccc-cccceEEEeecccccccCCC
Q 017975 150 -V-------------GLT---------------------------------DAP-KIEE-WEGVKRISLMENEIQSLPQI 180 (363)
Q Consensus 150 -~-------------~~~---------------------------------~~~-~~~~-~~~l~~L~l~~~~~~~l~~~ 180 (363)
. ... .+| .+.. ..++|.|.+.++.++.+|..
T Consensus 528 ~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~ 607 (1153)
T PLN03210 528 NTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN 607 (1153)
T ss_pred CcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc
Confidence 0 000 000 0111 13466777777777777766
Q ss_pred CCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCC-CCCccchhhhccc-hhc
Q 017975 181 PTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSST-KVRGLPQELKALV-LRM 258 (363)
Q Consensus 181 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~-~l~~lP~~i~~L~-L~~ 258 (363)
..+.+|+.|++.+|.+..++.+ +..+++|++|+|+++..++.+| .++.+++|++|++++| .+..+|.+++.++ |+.
T Consensus 608 f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 608 FRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred CCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 6778888999988888888776 6788888999988887778887 5888888888888887 6777888888887 777
Q ss_pred cccC-cCccCcCCC
Q 017975 259 LHCG-SNHWPIAEE 271 (363)
Q Consensus 259 L~~~-~~~l~~lp~ 271 (363)
|+++ |+.++.+|.
T Consensus 686 L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 686 LDMSRCENLEILPT 699 (1153)
T ss_pred EeCCCCCCcCccCC
Confidence 7765 456777775
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.74 E-value=3.5e-19 Score=160.10 Aligned_cols=98 Identities=40% Similarity=0.775 Sum_probs=83.9
Q ss_pred CccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccccccccchHHHHHHHHhhcCCCCChhhhHHHhHhcCCCCCcc
Q 017975 1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSE 80 (363)
Q Consensus 1 Iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~lk~cfl~~s~Fp~~~~ 80 (363)
|+++|+|+||||+++|++|+.+.+..+|+++++.+........+....+..++.+||+.||+ ++|.||+|||+||+++.
T Consensus 188 i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~f~~L~~f~~~~~ 266 (287)
T PF00931_consen 188 IVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD-ELRRCFLYLSIFPEGVP 266 (287)
T ss_dssp HHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT-CCHHHHHHGGGSGTTS-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCc-cHHHHHhhCcCCCCCce
Confidence 57899999999999999997766789999999988877654444455899999999999999 89999999999999999
Q ss_pred cChHHHHHHHHHhCCccCc
Q 017975 81 IRKTDLIVYWESEGLLDSI 99 (363)
Q Consensus 81 ~~~~~li~~w~a~g~~~~~ 99 (363)
|+++.++++|+|+||+.+.
T Consensus 267 i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 267 IPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp EEHHHHHHHHTT-HHTC--
T ss_pred ECHHHHHHHHHHCCCCccc
Confidence 9999999999999999865
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.70 E-value=6.1e-17 Score=168.88 Aligned_cols=191 Identities=21% Similarity=0.292 Sum_probs=83.9
Q ss_pred ccceEEEeecccccc-cC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017975 162 EGVKRISLMENEIQS-LP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDL 239 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~-l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 239 (363)
+++++|++++|.+.. +| .+..+++|++|++++|.+....+..++++++|++|++++|.....+|..++++++|++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 344444444444331 22 2344455555555555444333323445555555555555333344555555555555555
Q ss_pred cCCCCC-ccchhhhccc-hhccccCcCccC-cCCC--CCCCCC------------CcccchhhhccccccceEEEEeccC
Q 017975 240 SSTKVR-GLPQELKALV-LRMLHCGSNHWP-IAEE--GNVLSD------------DAESLMKEIHCLEQLNLIALSLRGS 302 (363)
Q Consensus 240 ~~~~l~-~lP~~i~~L~-L~~L~~~~~~l~-~lp~--~~l~~l------------~~~~~l~~l~~L~~L~l~~~~~~~~ 302 (363)
++|.+. .+|..++.++ |+.|+++.|.+. .+|. +++..+ ..|..+..+++|+.|++.+|.+.+.
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 299 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence 555444 2444555554 555555444443 2222 111111 2334444455555555555544433
Q ss_pred cccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccc
Q 017975 303 RGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNV 357 (363)
Q Consensus 303 ~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~ 357 (363)
.+ ..+..++++ +.|++++|......+..+..+++|+.|++++|...+.+|
T Consensus 300 ~p-~~~~~l~~L----~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 300 IP-ELVIQLQNL----EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred CC-hhHcCCCCC----cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 22 223333333 455555444322333344445555555555555444444
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.70 E-value=5.7e-17 Score=169.09 Aligned_cols=195 Identities=22% Similarity=0.283 Sum_probs=138.9
Q ss_pred ccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017975 160 EWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDL 239 (363)
Q Consensus 160 ~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 239 (363)
.++++++|++++|.+........+++|++|++++|.+....+..++++++|++|++++|.....+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 56778888888877765433456788888888888887554545888889999999888656678888888999999999
Q ss_pred cCCCCCc-cchhhhccc-hhccccCcCccC-cCCC--CCCCCC------------CcccchhhhccccccceEEEEeccC
Q 017975 240 SSTKVRG-LPQELKALV-LRMLHCGSNHWP-IAEE--GNVLSD------------DAESLMKEIHCLEQLNLIALSLRGS 302 (363)
Q Consensus 240 ~~~~l~~-lP~~i~~L~-L~~L~~~~~~l~-~lp~--~~l~~l------------~~~~~l~~l~~L~~L~l~~~~~~~~ 302 (363)
++|.+.. +|..+++++ |+.|+++.|.+. .+|. +++.++ ..|..++++++|+.|++.+|.+.+.
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 8887764 788888888 888888888776 3443 222222 3555666777777777777766655
Q ss_pred cccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975 303 RGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC 359 (363)
Q Consensus 303 ~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 359 (363)
.+ ..+..++++ +.|++++|......+..+.++++|+.|++++|...+..|..
T Consensus 276 ~p-~~l~~l~~L----~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 276 IP-PSIFSLQKL----ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred Cc-hhHhhccCc----CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 44 345555555 77788777654444556777788888888888777666653
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=4.9e-19 Score=139.17 Aligned_cols=159 Identities=30% Similarity=0.463 Sum_probs=127.3
Q ss_pred CCCCCccccccccceEEEeecccccccC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcccc
Q 017975 151 GLTDAPKIEEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIS 229 (363)
Q Consensus 151 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~ 229 (363)
.+.+++.+..++++.+|.+++|.++.+| .+.++.+|++|++.+|+++++|.+ ++.+++||.|+++-| .+..+|.++|
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfg 99 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFG 99 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccC
Confidence 3445666777788899999999988875 578899999999999999999888 899999999999988 7888999999
Q ss_pred CCCCCCEEEccCCCCCc--cchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccc
Q 017975 230 SLVSLHHLDLSSTKVRG--LPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVE 306 (363)
Q Consensus 230 ~L~~L~~L~l~~~~l~~--lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 306 (363)
.++.|+.||+++|++.+ +|..+..++ |+.|+++.|.++.+| ..++++++|+.|.+.+|.+.+.. .
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp----------~dvg~lt~lqil~lrdndll~lp--k 167 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILP----------PDVGKLTNLQILSLRDNDLLSLP--K 167 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCC----------hhhhhhcceeEEeeccCchhhCc--H
Confidence 99999999999998875 898888888 999999999988888 56777777777777666654332 3
Q ss_pred cccCCCchhhhhheeeecccC
Q 017975 307 NFLKFPKLQNITQALHIKDCN 327 (363)
Q Consensus 307 ~l~~l~~l~~~L~~L~l~~~~ 327 (363)
.++.+..+ +.|++.++.
T Consensus 168 eig~lt~l----relhiqgnr 184 (264)
T KOG0617|consen 168 EIGDLTRL----RELHIQGNR 184 (264)
T ss_pred HHHHHHHH----HHHhcccce
Confidence 44555555 666666654
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=9.8e-19 Score=137.49 Aligned_cols=171 Identities=23% Similarity=0.281 Sum_probs=149.5
Q ss_pred cccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhh
Q 017975 173 EIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELK 252 (363)
Q Consensus 173 ~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~ 252 (363)
++.++|.+.++.+...|.+++|.++.+||. +..+.+|++|++++| .++++|.+|+.++.|+.|+++-|.+..+|.+++
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 455678888999999999999999999999 899999999999999 899999999999999999999999999999999
Q ss_pred ccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCc
Q 017975 253 ALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPL 331 (363)
Q Consensus 253 ~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~ 331 (363)
.+. |+.|++..|.+.+- ..|..+..++.|+.|++.+|.+.-. | +.++.++++ |.|.+.++..+.
T Consensus 100 s~p~levldltynnl~e~--------~lpgnff~m~tlralyl~dndfe~l-p-~dvg~lt~l----qil~lrdndll~- 164 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNEN--------SLPGNFFYMTTLRALYLGDNDFEIL-P-PDVGKLTNL----QILSLRDNDLLS- 164 (264)
T ss_pred CCchhhhhhccccccccc--------cCCcchhHHHHHHHHHhcCCCcccC-C-hhhhhhcce----eEEeeccCchhh-
Confidence 999 99999999887542 2447888899999999999988533 3 567888888 999999976543
Q ss_pred CCcccccccccceeeeccCCCCCcccccc
Q 017975 332 NLLHLANMEHLQLFSIWDSNLEDWNVDCA 360 (363)
Q Consensus 332 ~~~~l~~l~~L~~L~l~~c~~l~~~~~~~ 360 (363)
.|..++.++.|+.|+++||+..-.+|+.+
T Consensus 165 lpkeig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeeecChhhh
Confidence 36789999999999999999888777754
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=9.3e-18 Score=148.19 Aligned_cols=111 Identities=35% Similarity=0.505 Sum_probs=97.6
Q ss_pred ccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCC
Q 017975 156 PKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLH 235 (363)
Q Consensus 156 ~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 235 (363)
++++.++++..|++..|.+..+|+|..+..|..|.+..|.++.+|....+++.++.+|||..| .++++|..++.+.+|.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLE 278 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhh
Confidence 467778888889999999999999999999999999999999999887889999999999999 8999999999999999
Q ss_pred EEEccCCCCCccchhhhccchhccccCcCccC
Q 017975 236 HLDLSSTKVRGLPQELKALVLRMLHCGSNHWP 267 (363)
Q Consensus 236 ~L~l~~~~l~~lP~~i~~L~L~~L~~~~~~l~ 267 (363)
+||+++|.|+.+|.++++++|+.|.+.+|.++
T Consensus 279 rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNLHLKFLALEGNPLR 310 (565)
T ss_pred hhcccCCccccCCcccccceeeehhhcCCchH
Confidence 99999999999999999988666666555543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.63 E-value=5.9e-17 Score=150.51 Aligned_cols=202 Identities=23% Similarity=0.248 Sum_probs=128.0
Q ss_pred ccccccccceEEEeecccccccCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCC
Q 017975 156 PKIEEWEGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSL 234 (363)
Q Consensus 156 ~~~~~~~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L 234 (363)
+++..+..+..|++++|++++.|. +...+++-+|++++|++..+|...|-++.-|-+||||+| .+..+|+.+..|.+|
T Consensus 97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSML 175 (1255)
T ss_pred chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhh
Confidence 456677778888888888877773 566677777777777777777777777777777777777 677777777766666
Q ss_pred CEEEccCCCC--------------------------Cccchhhhccc-hhccccCcCccCcCCC-----CCCCCC-----
Q 017975 235 HHLDLSSTKV--------------------------RGLPQELKALV-LRMLHCGSNHWPIAEE-----GNVLSD----- 277 (363)
Q Consensus 235 ~~L~l~~~~l--------------------------~~lP~~i~~L~-L~~L~~~~~~l~~lp~-----~~l~~l----- 277 (363)
++|+|++|.+ ..+|.++..|. |..+++++|.+..+|. .++..+
T Consensus 176 qtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred hhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC
Confidence 6666666542 12555555555 6666777777776665 222111
Q ss_pred --------------------------CcccchhhhccccccceEEEEeccCcccccccCCCchh----------------
Q 017975 278 --------------------------DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQ---------------- 315 (363)
Q Consensus 278 --------------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~---------------- 315 (363)
..|+.+..+++|+.|..-+|.+.-..-+..++.+.++.
T Consensus 256 ~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEgl 335 (1255)
T KOG0444|consen 256 KITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGL 335 (1255)
T ss_pred ceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhh
Confidence 34444444555555544444433221122333333220
Q ss_pred -h--hhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975 316 -N--ITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC 359 (363)
Q Consensus 316 -~--~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 359 (363)
+ .|+.|.++.|. +-..|..+.-|+-|+.|++.+|+.+-.+|+-
T Consensus 336 cRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred hhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCCCc
Confidence 0 12666766544 4445778888999999999999999888764
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.62 E-value=3.8e-17 Score=151.73 Aligned_cols=127 Identities=23% Similarity=0.400 Sum_probs=82.4
Q ss_pred eeEEecCCCCCCCc-cccccccceEEEeecccccccC-CCCCCCCccEEEeccCCcc--ccchHHhcCCCCCCEEEcccC
Q 017975 143 KFLVRAGVGLTDAP-KIEEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIE--EITESFFQSLPSLRVLNLSVN 218 (363)
Q Consensus 143 ~~~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~ 218 (363)
.++..+..++..+| .+..+.++.+|++.+|++..+. +++.++.||.+++..|++. ++|++ +-.+.-|.+||||+|
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN 113 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh
Confidence 34555555555555 3556667777777777766543 4666677777777766553 46666 556677777777777
Q ss_pred CCccccCccccCCCCCCEEEccCCCCCccchhh-hccc-hhccccCcCccCcCCC
Q 017975 219 HYLTELPVGISSLVSLHHLDLSSTKVRGLPQEL-KALV-LRMLHCGSNHWPIAEE 271 (363)
Q Consensus 219 ~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i-~~L~-L~~L~~~~~~l~~lp~ 271 (363)
.+++.|..+....++-.|+||+|+|..+|.++ -+|+ |-.|++++|+++.+|+
T Consensus 114 -qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP 167 (1255)
T KOG0444|consen 114 -QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP 167 (1255)
T ss_pred -hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH
Confidence 66667777776677777777777777776553 4555 6666677777776665
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.56 E-value=2.5e-14 Score=150.49 Aligned_cols=207 Identities=21% Similarity=0.211 Sum_probs=132.4
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccC-CCCCCCCccEEEeccCC-ccccchHHhcCCCCCCEEEcccCCC
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNH-IEEITESFFQSLPSLRVLNLSVNHY 220 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~~~~ 220 (363)
+++.+.+..+..+|....+.+++.|++.++.++.++ .+..+++|+.|+++++. +..+|. ++.+++|+.|++++|..
T Consensus 592 r~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~ 669 (1153)
T PLN03210 592 RLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSS 669 (1153)
T ss_pred EEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCC
Confidence 455666666777776666788999999999888876 46778889999998774 555553 77888899999988888
Q ss_pred ccccCccccCCCCCCEEEccCC-CCCccchhhhccc-hhccccCc-CccCcCCC--CCCCCC--------Ccccch----
Q 017975 221 LTELPVGISSLVSLHHLDLSST-KVRGLPQELKALV-LRMLHCGS-NHWPIAEE--GNVLSD--------DAESLM---- 283 (363)
Q Consensus 221 ~~~lp~~i~~L~~L~~L~l~~~-~l~~lP~~i~~L~-L~~L~~~~-~~l~~lp~--~~l~~l--------~~~~~l---- 283 (363)
+..+|.+++.+++|++|++++| .+..+|..+ +++ |+.|++++ ..+..+|. .++..+ ..|..+
T Consensus 670 L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~ 748 (1153)
T PLN03210 670 LVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLEN 748 (1153)
T ss_pred ccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccc
Confidence 8888888888889999999887 677788765 444 55544433 23444442 222221 111111
Q ss_pred --------------------------hhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccc
Q 017975 284 --------------------------KEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLA 337 (363)
Q Consensus 284 --------------------------~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~ 337 (363)
...++|+.|++.+|......| ..++++++| +.|++++|..+...|..+
T Consensus 749 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L----~~L~Ls~C~~L~~LP~~~- 822 (1153)
T PLN03210 749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-SSIQNLHKL----EHLEIENCINLETLPTGI- 822 (1153)
T ss_pred cccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC-hhhhCCCCC----CEEECCCCCCcCeeCCCC-
Confidence 112345555555544333333 334555554 777777776544433333
Q ss_pred cccccceeeeccCCCCCcccc
Q 017975 338 NMEHLQLFSIWDSNLEDWNVD 358 (363)
Q Consensus 338 ~l~~L~~L~l~~c~~l~~~~~ 358 (363)
++++|+.|++++|..++.+|+
T Consensus 823 ~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred CccccCEEECCCCCccccccc
Confidence 567777777777776666554
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.50 E-value=4e-15 Score=137.36 Aligned_cols=207 Identities=22% Similarity=0.280 Sum_probs=124.8
Q ss_pred cCCCCCCCc--cccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccc
Q 017975 148 AGVGLTDAP--KIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223 (363)
Q Consensus 148 ~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 223 (363)
..+.++.+| .++.+++++.|++..|.++... .|..++.|+.|.+..|.+..+.++.|-.+.++++|+|+.| .++.
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~ 283 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQA 283 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhh
Confidence 444455544 3455777888888777766542 3555666666666666666655555555566666666555 3333
Q ss_pred c-CccccCCCCCCEEEccCCCCCcc-chhhhccc-hhccccCcCccCcCCCCC------CCCC---------Ccccchhh
Q 017975 224 L-PVGISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEEGN------VLSD---------DAESLMKE 285 (363)
Q Consensus 224 l-p~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~-L~~L~~~~~~l~~lp~~~------l~~l---------~~~~~l~~ 285 (363)
+ -.++.+|+.|+.|++++|.|..+ ++++.--+ |..|+++.|++++++++. +..+ --.-.+..
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 2 23445555555555555555554 33333333 555555555555555411 1111 01134677
Q ss_pred hccccccceEEEEeccCcc--cccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975 286 IHCLEQLNLIALSLRGSRG--VENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC 359 (363)
Q Consensus 286 l~~L~~L~l~~~~~~~~~~--~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 359 (363)
+++|++|++..|.++..+. ...+.+++.| +.|.+.+|+.....-..+..+++|+.|++.+|.+...-|++
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L----rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nA 435 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSL----RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNA 435 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhh----hheeecCceeeecchhhhccCcccceecCCCCcceeecccc
Confidence 8899999998888765543 2234455555 88999998865555567889999999999999887666654
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.49 E-value=1.1e-14 Score=134.39 Aligned_cols=209 Identities=22% Similarity=0.265 Sum_probs=136.6
Q ss_pred eEEecCCCCCCCccccccc-cceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975 144 FLVRAGVGLTDAPKIEEWE-GVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 220 (363)
.+....+.++.+|.+.... +++.|++.+|.|.++. .+..++.||+|||+.|.++.++...|..-.++++|+|++| .
T Consensus 106 ~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~ 184 (873)
T KOG4194|consen 106 EVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-R 184 (873)
T ss_pred eeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-c
Confidence 3444555666666655444 3777888777777664 3566777788888888777777666666677888888887 4
Q ss_pred cccc-CccccCCCCCCEEEccCCCCCccchhh-hccc-hhccccCcCccCcCCC---C---CCCCC---------Ccccc
Q 017975 221 LTEL-PVGISSLVSLHHLDLSSTKVRGLPQEL-KALV-LRMLHCGSNHWPIAEE---G---NVLSD---------DAESL 282 (363)
Q Consensus 221 ~~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i-~~L~-L~~L~~~~~~l~~lp~---~---~l~~l---------~~~~~ 282 (363)
++.+ -..|..+.+|.+|.|+.|.++.+|... .+|. |+.|++..|+++.... . .|..+ -....
T Consensus 185 It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~ 264 (873)
T KOG4194|consen 185 ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA 264 (873)
T ss_pred ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcc
Confidence 5544 345677778888888888888887644 4477 8888887777665432 1 11111 01123
Q ss_pred hhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975 283 MKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD 358 (363)
Q Consensus 283 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 358 (363)
+..+.++++|++..|++..... +.+.+++.| +.|++++|......+.+....++|+.|+++.|.+.+..++
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~-g~lfgLt~L----~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNE-GWLFGLTSL----EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred eeeecccceeecccchhhhhhc-ccccccchh----hhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence 4556677777777777665433 455566666 7788887765555556666777888888888877665544
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=1.7e-13 Score=135.54 Aligned_cols=217 Identities=18% Similarity=0.177 Sum_probs=118.7
Q ss_pred HHHHHhhhh-cccceeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcC--
Q 017975 130 MALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQS-- 206 (363)
Q Consensus 130 ~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-- 206 (363)
.|....+++ ......+......++.+|..- ..+++.|++..|.++.+|.. +++|++|++++|.++.+|.. ..+
T Consensus 190 ~a~~r~~~Cl~~~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l-p~sL~ 265 (788)
T PRK15387 190 AVVQKMRACLNNGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL-PPGLL 265 (788)
T ss_pred HHHHHHHHHhcCCCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc-ccccc
Confidence 333333333 344456666777777766522 24677777777777777653 46777777777776665531 110
Q ss_pred ---------------CCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhc---c--------------
Q 017975 207 ---------------LPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKA---L-------------- 254 (363)
Q Consensus 207 ---------------l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~---L-------------- 254 (363)
..+|+.|++++| .++.+|.. +++|++|++++|+++.+|..... |
T Consensus 266 ~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp 341 (788)
T PRK15387 266 ELSIFSNPLTHLPALPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLP 341 (788)
T ss_pred eeeccCCchhhhhhchhhcCEEECcCC-cccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccc
Confidence 123444444444 34444431 25677777777766665542111 1
Q ss_pred c-hhccccCcCccCcCCC--CCCCCC--------CcccchhhhccccccceEEEEeccCccc-----------ccccCCC
Q 017975 255 V-LRMLHCGSNHWPIAEE--GNVLSD--------DAESLMKEIHCLEQLNLIALSLRGSRGV-----------ENFLKFP 312 (363)
Q Consensus 255 ~-L~~L~~~~~~l~~lp~--~~l~~l--------~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----------~~l~~l~ 312 (363)
. |+.|++++|+++.+|. .++..+ .+|.. ..+|+.|++.+|.+...... ..+.+++
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP 418 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLP 418 (788)
T ss_pred cccceEecCCCccCCCCCCCcccceehhhccccccCccc---ccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCC
Confidence 1 5566666666666664 222222 12211 23556666666655432110 1122233
Q ss_pred chhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975 313 KLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD 358 (363)
Q Consensus 313 ~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 358 (363)
.++..|+.|++++|.. ...|..+.++++|+.|++++|++.+..|.
T Consensus 419 ~l~~~L~~L~Ls~NqL-t~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 419 MLPSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cchhhhhhhhhccCcc-cccChHHhhccCCCeEECCCCCCCchHHH
Confidence 3334456677776553 33456788899999999999998876554
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.41 E-value=2e-14 Score=127.00 Aligned_cols=212 Identities=25% Similarity=0.293 Sum_probs=157.3
Q ss_pred ceeEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975 142 EKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH 219 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~ 219 (363)
...+.+.+.+++.+|.--. +....+.+..|.|+.+|. |..+++||.|+|++|.|+.+.++.|.+++.|-.|-+.++.
T Consensus 48 g~~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 48 GGIVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred CceEEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 3566777778888775332 577889999999999984 8899999999999999999999989999999988888855
Q ss_pred CccccCcc-ccCCCCCCEEEccCCCCCccch-hhhccc-hhccccCcCccCcCCCC---CCCCC----------------
Q 017975 220 YLTELPVG-ISSLVSLHHLDLSSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEEG---NVLSD---------------- 277 (363)
Q Consensus 220 ~~~~lp~~-i~~L~~L~~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~---~l~~l---------------- 277 (363)
.++.+|+. +++|..|+.|.+.-|.+.-++. .+..|+ +..|.+..|.+..++.+ .+..+
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence 89998864 6778888888887777776654 456666 66666666666655541 11111
Q ss_pred ---------------------------------------------------------Ccc-cchhhhccccccceEEEEe
Q 017975 278 ---------------------------------------------------------DAE-SLMKEIHCLEQLNLIALSL 299 (363)
Q Consensus 278 ---------------------------------------------------------~~~-~~l~~l~~L~~L~l~~~~~ 299 (363)
..| ..++.+++|++|++++|.+
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 111 2477899999999999999
Q ss_pred ccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975 300 RGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC 359 (363)
Q Consensus 300 ~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 359 (363)
+...+ ..|.++.++ +.|+|..|+.....-..|.++..|++|++++|++....|..
T Consensus 287 ~~i~~-~aFe~~a~l----~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 287 TRIED-GAFEGAAEL----QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA 341 (498)
T ss_pred chhhh-hhhcchhhh----hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc
Confidence 87655 667777777 88888887643333345778888888888888877655543
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=2e-12 Score=128.51 Aligned_cols=190 Identities=22% Similarity=0.244 Sum_probs=114.8
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 222 (363)
..+...+.+++.+|..- .++++.|++++|.++.+|... .++|++|++++|.++.+|.. + ..+|+.|+|++| .+.
T Consensus 181 ~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~-l--~~~L~~L~Ls~N-~L~ 254 (754)
T PRK15370 181 TELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPAT-L--PDTIQEMELSIN-RIT 254 (754)
T ss_pred eEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChh-h--hccccEEECcCC-ccC
Confidence 34555666666666421 357889999999988887532 35888888888888887765 3 246778888887 566
Q ss_pred ccCccccCCCCCCEEEccCCCCCccchhhhccchhccccCcCccCcCCC---CCCCCC--------Ccccchhhhccccc
Q 017975 223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEE---GNVLSD--------DAESLMKEIHCLEQ 291 (363)
Q Consensus 223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~L~~L~~~~~~l~~lp~---~~l~~l--------~~~~~l~~l~~L~~ 291 (363)
.+|..+. .+|++|++++|+++.+|..+.. .|+.|++++|+++.+|. .++..+ .+|..+ .++|+.
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~~-sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~ 329 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHNKISCLPENLPE-ELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL--PPGLKT 329 (754)
T ss_pred cCChhHh--CCCCEEECcCCccCccccccCC-CCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--ccccee
Confidence 7776664 4677788877777777765531 26666777777776664 111111 112211 245666
Q ss_pred cceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975 292 LNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 292 L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~ 354 (363)
|.+.+|.+... + ..+ +..|+.|++++|+.. ..+..+ .++|+.|+|++|.+..
T Consensus 330 L~Ls~N~Lt~L-P-~~l------~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 330 LEAGENALTSL-P-ASL------PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN 381 (754)
T ss_pred ccccCCccccC-C-hhh------cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC
Confidence 66666665532 2 111 123477777776532 222222 2466777777766543
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.39 E-value=5.3e-15 Score=130.96 Aligned_cols=186 Identities=24% Similarity=0.310 Sum_probs=111.1
Q ss_pred ccccccceEEEeecccccccC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCE
Q 017975 158 IEEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHH 236 (363)
Q Consensus 158 ~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 236 (363)
+.....++.++.+.|.+..++ +++.+..+..++..+|++..+|++ +.++.+|..|++.+| .++.+|+..-.++.|+.
T Consensus 110 i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~-~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 110 IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPED-MVNLSKLSKLDLEGN-KLKALPENHIAMKRLKH 187 (565)
T ss_pred HhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchH-HHHHHHHHHhhcccc-chhhCCHHHHHHHHHHh
Confidence 444455556666666555554 355556666666666666666665 555666666666666 55555555555666666
Q ss_pred EEccCCCCCccchhhhccc-hhccccCcCccCcCCC-CC---CCCC--------Ccccch-hhhccccccceEEEEeccC
Q 017975 237 LDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEE-GN---VLSD--------DAESLM-KEIHCLEQLNLIALSLRGS 302 (363)
Q Consensus 237 L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~-~~---l~~l--------~~~~~l-~~l~~L~~L~l~~~~~~~~ 302 (363)
||...|-+..+|+.++.+. |..|++..|++..+|. .. +..+ ..|+.. ..+.++..|++.+|.+.+.
T Consensus 188 ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~ 267 (565)
T KOG0472|consen 188 LDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV 267 (565)
T ss_pred cccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC
Confidence 6666666666666666666 6666666666666664 10 1111 233332 3566667777777766543
Q ss_pred cccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975 303 RGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE 353 (363)
Q Consensus 303 ~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l 353 (363)
. +.+.-+.++ .+|++++|. +...+.+++++ +|+.|-+.||+.-
T Consensus 268 P--de~clLrsL----~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 268 P--DEICLLRSL----ERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred c--hHHHHhhhh----hhhcccCCc-cccCCcccccc-eeeehhhcCCchH
Confidence 2 333444444 778887744 45556677777 8888888888754
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.36 E-value=8.7e-14 Score=134.81 Aligned_cols=130 Identities=25% Similarity=0.308 Sum_probs=78.6
Q ss_pred hcCCCCCCEEEcccCCCccccCcc-ccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCccc
Q 017975 204 FQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAES 281 (363)
Q Consensus 204 ~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~ 281 (363)
+.++++||+|+|++| .+.++|++ +.++..|+.|+||||+++.+|..+.++. |+.|..+.|++..+|
T Consensus 379 l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP----------- 446 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP----------- 446 (1081)
T ss_pred hccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-----------
Confidence 556666666666666 56666643 4566666666666666666666666666 666666666666555
Q ss_pred chhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccC
Q 017975 282 LMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDS 350 (363)
Q Consensus 282 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c 350 (363)
.+..++.|+.++++.|.++...-.....+ ++ |++|++++|...-.+...|..++++...++.-+
T Consensus 447 e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~----LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PN----LKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhcCcceEEecccchhhhhhhhhhCCC-cc----cceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 45566677777777777665433222111 33 377777777654444445555555555555544
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.28 E-value=7.8e-12 Score=124.32 Aligned_cols=147 Identities=21% Similarity=0.265 Sum_probs=105.8
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 222 (363)
..+...++.++.+|... ..+++.|++++|.++.+|.. -..+|+.|++++|.+..+|.. +. .+|++|++++| .++
T Consensus 202 ~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~-l~~~L~~L~Ls~N~L~~LP~~-l~--s~L~~L~Ls~N-~L~ 275 (754)
T PRK15370 202 TTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPAT-LPDTIQEMELSINRITELPER-LP--SALQSLDLFHN-KIS 275 (754)
T ss_pred cEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChh-hhccccEEECcCCccCcCChh-Hh--CCCCEEECcCC-ccC
Confidence 34555666777666432 36899999999999988752 235799999999999988876 32 57999999998 788
Q ss_pred ccCccccCCCCCCEEEccCCCCCccchhhhccchhccccCcCccCcCCC---CCCCCC--------Ccccchhhhccccc
Q 017975 223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEE---GNVLSD--------DAESLMKEIHCLEQ 291 (363)
Q Consensus 223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~L~~L~~~~~~l~~lp~---~~l~~l--------~~~~~l~~l~~L~~ 291 (363)
.+|..+. .+|++|++++|+++.+|..+.. .|..|++++|.++.+|. .++..+ .+|..+ .++|+.
T Consensus 276 ~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~-sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~ 350 (754)
T PRK15370 276 CLPENLP--EELRYLSVYDNSIRTLPAHLPS-GITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL--PPELQV 350 (754)
T ss_pred ccccccC--CCCcEEECCCCccccCcccchh-hHHHHHhcCCccccCCccccccceeccccCCccccCChhh--cCcccE
Confidence 8998775 5899999999999998865431 16777777788777765 333333 223222 247777
Q ss_pred cceEEEEec
Q 017975 292 LNLIALSLR 300 (363)
Q Consensus 292 L~l~~~~~~ 300 (363)
|++.+|.+.
T Consensus 351 L~Ls~N~L~ 359 (754)
T PRK15370 351 LDVSKNQIT 359 (754)
T ss_pred EECCCCCCC
Confidence 777777665
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.20 E-value=1.9e-12 Score=125.71 Aligned_cols=175 Identities=23% Similarity=0.326 Sum_probs=96.5
Q ss_pred ccceEEEeecccccccCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEcc
Q 017975 162 EGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLS 240 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 240 (363)
.++++++++.|.+..+|+ +..+.+|+.+...+|++..+|.. +.....|++|.+..| .+..+|....++.+|++|+|.
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~r-i~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLR-ISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHH-HhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeeh
Confidence 455666666666666553 35566666666666666555555 555666666666666 566666666666666777776
Q ss_pred CCCCCccchhhhccc---hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhh
Q 017975 241 STKVRGLPQELKALV---LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNI 317 (363)
Q Consensus 241 ~~~l~~lP~~i~~L~---L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~ 317 (363)
.|++..+|..+..-. |+.|+.++|.+..+|. ..=...+.|+.|++.+|.+.+..- +-+..+.+|
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~---------~~e~~~~~Lq~LylanN~Ltd~c~-p~l~~~~hL--- 385 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS---------YEENNHAALQELYLANNHLTDSCF-PVLVNFKHL--- 385 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhcccccccc---------ccchhhHHHHHHHHhcCcccccch-hhhccccce---
Confidence 666666666432222 6666666666666663 111223455555555555544322 233333443
Q ss_pred hheeeecccCCCCcCCcccccccccceeeeccCCC
Q 017975 318 TQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNL 352 (363)
Q Consensus 318 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 352 (363)
+.|+|++|.....+-..+.+++.|+.|+++||..
T Consensus 386 -KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 386 -KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred -eeeeecccccccCCHHHHhchHHhHHHhcccchh
Confidence 6666665542222223455566666666666543
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=8.9e-13 Score=121.74 Aligned_cols=176 Identities=26% Similarity=0.329 Sum_probs=137.2
Q ss_pred cccceEEEeecccccccCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017975 161 WEGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDL 239 (363)
Q Consensus 161 ~~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 239 (363)
+......+++.|.+..+|. +..+..|..+.+..|.+..+|.. +.++..|.+|||+.| .+..+|..++.|+ |+.|-+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 3455667888888888874 56677788888888888888877 888999999999999 7888898898887 899999
Q ss_pred cCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhh
Q 017975 240 SSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNIT 318 (363)
Q Consensus 240 ~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L 318 (363)
++|+++.+|..++.+. |..|+.++|.+..+| ..++++.+|+.|.+..|.+.... +.+..++ |
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slp----------sql~~l~slr~l~vrRn~l~~lp--~El~~Lp-----L 213 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLP----------SQLGYLTSLRDLNVRRNHLEDLP--EELCSLP-----L 213 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhch----------HHhhhHHHHHHHHHhhhhhhhCC--HHHhCCc-----e
Confidence 9999999999998555 888888999888887 67888888888888888876543 3344333 3
Q ss_pred heeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975 319 QALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD 358 (363)
Q Consensus 319 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 358 (363)
..|+++.|+ +...|..|.+|+.|++|-|.+|+. +++|.
T Consensus 214 i~lDfScNk-is~iPv~fr~m~~Lq~l~LenNPL-qSPPA 251 (722)
T KOG0532|consen 214 IRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNPL-QSPPA 251 (722)
T ss_pred eeeecccCc-eeecchhhhhhhhheeeeeccCCC-CCChH
Confidence 778888654 444466888899999998887764 44444
No 22
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=9.6e-11 Score=110.16 Aligned_cols=185 Identities=25% Similarity=0.351 Sum_probs=144.9
Q ss_pred CccccccccceEEEeecccccccCCCCCCC--CccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCC
Q 017975 155 APKIEEWEGVKRISLMENEIQSLPQIPTCP--RLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV 232 (363)
Q Consensus 155 ~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~--~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~ 232 (363)
.......+.+..+++.++.+..++...... +|+.|++++|.+..++.. +..+++|+.|++++| .+..+|...+.++
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~ 186 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLS 186 (394)
T ss_pred chhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhh
Confidence 334445567899999999999988765554 899999999999988644 789999999999999 8999998877899
Q ss_pred CCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCC
Q 017975 233 SLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKF 311 (363)
Q Consensus 233 ~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 311 (363)
.|+.|++++|.+..+|..+..+. |..+.++.|.....+ ..+..+.++..|.+.++.+... ...+..+
T Consensus 187 ~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~----------~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l 254 (394)
T COG4886 187 NLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL----------SSLSNLKNLSGLELSNNKLEDL--PESIGNL 254 (394)
T ss_pred hhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecc----------hhhhhcccccccccCCceeeec--cchhccc
Confidence 99999999999999999887777 888888888544444 5677888888888777776542 1334555
Q ss_pred CchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975 312 PKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC 359 (363)
Q Consensus 312 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 359 (363)
+++ ++|++++|..... ..+..+.+|+.|+++++.....+|..
T Consensus 255 ~~l----~~L~~s~n~i~~i--~~~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 255 SNL----ETLDLSNNQISSI--SSLGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccc----ceecccccccccc--ccccccCccCEEeccCccccccchhh
Confidence 555 9999998764333 23888999999999999887766654
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=3.8e-11 Score=98.14 Aligned_cols=127 Identities=25% Similarity=0.354 Sum_probs=39.5
Q ss_pred ccccceEEEeecccccccCCCC-CCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcccc-CCCCCCEE
Q 017975 160 EWEGVKRISLMENEIQSLPQIP-TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIS-SLVSLHHL 237 (363)
Q Consensus 160 ~~~~l~~L~l~~~~~~~l~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~-~L~~L~~L 237 (363)
...+++.|++.+|.++.+..+. .+.+|+.|++++|.++.+.. +..+++|+.|++++| .++.+++.+. .+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence 3345677777777777666655 46677777777777776654 666777777777777 5666654442 46777777
Q ss_pred EccCCCCCccch--hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceE
Q 017975 238 DLSSTKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLI 295 (363)
Q Consensus 238 ~l~~~~l~~lP~--~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~ 295 (363)
++++|+|..+-. .+..++ |+.|++..|.+..-+. .....+..+++|+.|+-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~------YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN------YRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT------HHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhh------HHHHHHHHcChhheeCCE
Confidence 777776665422 233334 6666666665544331 112344556666666543
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.10 E-value=9.5e-11 Score=118.46 Aligned_cols=211 Identities=22% Similarity=0.216 Sum_probs=130.5
Q ss_pred eEEecCCCCCCCccccccccceEEEeeccc--ccccCC--CCCCCCccEEEeccC-CccccchHHhcCCCCCCEEEcccC
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENE--IQSLPQ--IPTCPRLQTLLLEYN-HIEEITESFFQSLPSLRVLNLSVN 218 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--~~~l~~--~~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~ 218 (363)
.+...+.....++.....++++.|-+..|. +..++. |..++.|++||+++| .+..+|.. ++.+-+||||+++++
T Consensus 527 r~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 527 RMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT 605 (889)
T ss_pred EEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC
Confidence 444444455555554455678999998885 666665 778999999999987 45667666 899999999999999
Q ss_pred CCccccCccccCCCCCCEEEccCCC-CCccchhhhccc-hhccccCcCccCcCC----C-CCCCCC--------------
Q 017975 219 HYLTELPVGISSLVSLHHLDLSSTK-VRGLPQELKALV-LRMLHCGSNHWPIAE----E-GNVLSD-------------- 277 (363)
Q Consensus 219 ~~~~~lp~~i~~L~~L~~L~l~~~~-l~~lP~~i~~L~-L~~L~~~~~~l~~lp----~-~~l~~l-------------- 277 (363)
.+..+|.++++|..|.||++..+. +..+|.....|+ |++|.+.......-. . .++.++
T Consensus 606 -~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e 684 (889)
T KOG4658|consen 606 -GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLE 684 (889)
T ss_pred -CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHh
Confidence 888999999999999999999884 444444444466 666655443311000 0 111111
Q ss_pred -----------------------CcccchhhhccccccceEEEEeccCcccccccCCCch--hhhhheeeecccCCCCcC
Q 017975 278 -----------------------DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL--QNITQALHIKDCNSLPLN 332 (363)
Q Consensus 278 -----------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l--~~~L~~L~l~~~~~~~~~ 332 (363)
..+..+..+.+|+.|.+.++....... ....+...+ ...+..+.+.+|.....
T Consensus 685 ~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~~~~~~f~~l~~~~~~~~~~~r~- 762 (889)
T KOG4658|consen 685 DLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVI-EWEESLIVLLCFPNLSKVSILNCHMLRD- 762 (889)
T ss_pred hhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhc-ccccccchhhhHHHHHHHHhhccccccc-
Confidence 233344556666666666665542211 111111111 11224444445443222
Q ss_pred CcccccccccceeeeccCCCCCcccc
Q 017975 333 LLHLANMEHLQLFSIWDSNLEDWNVD 358 (363)
Q Consensus 333 ~~~l~~l~~L~~L~l~~c~~l~~~~~ 358 (363)
+.+....++|+.|.+..|...+.++.
T Consensus 763 l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 763 LTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred cchhhccCcccEEEEecccccccCCC
Confidence 44556678999999999988877654
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.10 E-value=3.7e-10 Score=112.11 Aligned_cols=177 Identities=19% Similarity=0.205 Sum_probs=104.4
Q ss_pred ccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccC
Q 017975 162 EGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSS 241 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 241 (363)
.+-..|+++.+.++.+|... .++|+.|++.+|.++.+|.. +++|++|++++| .++.+|... ++|++|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~lp---~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVLP---PGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCcc---cccceeeccC
Confidence 34567999999999988622 25899999999999998752 589999999999 788888533 4555665555
Q ss_pred CCCCccchhhhc-----------------cc-hhccccCcCccCcCCC--CCCCCC--------Ccccchhhhccccccc
Q 017975 242 TKVRGLPQELKA-----------------LV-LRMLHCGSNHWPIAEE--GNVLSD--------DAESLMKEIHCLEQLN 293 (363)
Q Consensus 242 ~~l~~lP~~i~~-----------------L~-L~~L~~~~~~l~~lp~--~~l~~l--------~~~~~l~~l~~L~~L~ 293 (363)
|.++.+|..... +. |+.|++++|.+..+|. .++..+ .+|. -..+|+.|+
T Consensus 272 N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~---lp~~Lq~Ld 348 (788)
T PRK15387 272 NPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPT---LPSGLQELS 348 (788)
T ss_pred CchhhhhhchhhcCEEECcCCccccccccccccceeECCCCccccCCCCcccccccccccCccccccc---cccccceEe
Confidence 555544432111 12 6666677777766654 222222 1111 113677777
Q ss_pred eEEEEeccCccc-----------ccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975 294 LIALSLRGSRGV-----------ENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 294 l~~~~~~~~~~~-----------~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~ 354 (363)
+++|.+....+. ..+..++.++..|+.|++++|... ..+.. .++|+.|++++|.+..
T Consensus 349 LS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss 416 (788)
T PRK15387 349 VSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS 416 (788)
T ss_pred cCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC
Confidence 777776642210 112222333334566666665422 11111 2466777777776543
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=2.8e-10 Score=93.06 Aligned_cols=119 Identities=29% Similarity=0.391 Sum_probs=52.3
Q ss_pred cceeEEecCCCCCCCcccc-ccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975 141 EEKFLVRAGVGLTDAPKIE-EWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH 219 (363)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~-~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~ 219 (363)
+...+...+..++.+..+. .+.+++.|++++|.++.++.+..+++|++|++++|.++.+.+.....+++|+.|++++|
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N- 98 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN- 98 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS-
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-
Confidence 3456777788888777776 57899999999999999999999999999999999999987663457999999999999
Q ss_pred CccccC--ccccCCCCCCEEEccCCCCCccch----hhhccc-hhccc
Q 017975 220 YLTELP--VGISSLVSLHHLDLSSTKVRGLPQ----ELKALV-LRMLH 260 (363)
Q Consensus 220 ~~~~lp--~~i~~L~~L~~L~l~~~~l~~lP~----~i~~L~-L~~L~ 260 (363)
.+..+- ..++.+++|++|++.+|.+..-+. -+..++ |+.||
T Consensus 99 ~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 99 KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp ---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 565543 356789999999999999886543 344555 77644
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=3.3e-11 Score=111.55 Aligned_cols=157 Identities=24% Similarity=0.332 Sum_probs=127.3
Q ss_pred ccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCC
Q 017975 156 PKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLH 235 (363)
Q Consensus 156 ~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 235 (363)
..+..+..+..++++.|++..+|.-...--|++|.+++|+++.+|+. ++.+.+|..||.+.| .+..+|..++++.+|+
T Consensus 115 ~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsql~~l~slr 192 (722)
T KOG0532|consen 115 EAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLR 192 (722)
T ss_pred hhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchHHhhhHHHHH
Confidence 34566678888999999988888543344589999999999999888 788899999999999 8888999999999999
Q ss_pred EEEccCCCCCccchhhhccchhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchh
Q 017975 236 HLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQ 315 (363)
Q Consensus 236 ~L~l~~~~l~~lP~~i~~L~L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~ 315 (363)
.|+++.|.+..+|+++..|.|..||.+||++..+| -.+.+|+.|+.|.+.+|.+.+.. ..++.....+
T Consensus 193 ~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iP----------v~fr~m~~Lq~l~LenNPLqSPP--AqIC~kGkVH 260 (722)
T KOG0532|consen 193 DLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLP----------VDFRKMRHLQVLQLENNPLQSPP--AQICEKGKVH 260 (722)
T ss_pred HHHHhhhhhhhCCHHHhCCceeeeecccCceeecc----------hhhhhhhhheeeeeccCCCCCCh--HHHHhcccee
Confidence 99999999999999999888999999999999888 78899999999999999887543 3333322221
Q ss_pred hhhheeeecccC
Q 017975 316 NITQALHIKDCN 327 (363)
Q Consensus 316 ~~L~~L~l~~~~ 327 (363)
- -++|+..-|.
T Consensus 261 I-FKyL~~qA~q 271 (722)
T KOG0532|consen 261 I-FKYLSTQACQ 271 (722)
T ss_pred e-eeeecchhcc
Confidence 1 2777877773
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=8.3e-11 Score=101.03 Aligned_cols=133 Identities=29% Similarity=0.447 Sum_probs=91.4
Q ss_pred ccccccceEEEeecccccccCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCE
Q 017975 158 IEEWEGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHH 236 (363)
Q Consensus 158 ~~~~~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 236 (363)
+..|..+..+++++|.++.+.+ ..-.+.+|.|++++|.+..+.. +..+++|..||||+| .+.++-..-.+|-+.++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEee
Confidence 3356677777777777776653 3455777777777777776654 667777777777777 56666555566777777
Q ss_pred EEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccC
Q 017975 237 LDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGS 302 (363)
Q Consensus 237 L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~ 302 (363)
|.|++|.+..+ +++++|. |..|++..|+++.+. ....+++++.|+++.+.+|.+...
T Consensus 357 L~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ld--------eV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 357 LKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELD--------EVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eehhhhhHhhh-hhhHhhhhheeccccccchhhHH--------HhcccccccHHHHHhhcCCCcccc
Confidence 77777777666 4667777 777777777765543 335677777777777777766543
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.90 E-value=1.6e-10 Score=105.27 Aligned_cols=188 Identities=20% Similarity=0.189 Sum_probs=112.4
Q ss_pred cccceEEEeeccccccc--CCCCCC---CCccEEEeccCCcccc----chHHhcCC-CCCCEEEcccCCCcc-----ccC
Q 017975 161 WEGVKRISLMENEIQSL--PQIPTC---PRLQTLLLEYNHIEEI----TESFFQSL-PSLRVLNLSVNHYLT-----ELP 225 (363)
Q Consensus 161 ~~~l~~L~l~~~~~~~l--~~~~~l---~~L~~L~l~~~~l~~~----~~~~~~~l-~~L~~L~L~~~~~~~-----~lp 225 (363)
+++++.|+++++.+... +.+..+ ++|+.|++++|.+... ....+..+ ++|+.|++++| .++ .++
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHH
Confidence 46788888888776531 112122 5588888888876631 11225566 78888888888 444 345
Q ss_pred ccccCCCCCCEEEccCCCCCc-----cchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEe
Q 017975 226 VGISSLVSLHHLDLSSTKVRG-----LPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSL 299 (363)
Q Consensus 226 ~~i~~L~~L~~L~l~~~~l~~-----lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~ 299 (363)
..+..+.+|++|++++|.+.. ++..+.... |+.|++++|.+..... ...+..+..+++|+.|++++|.+
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-----~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-----SALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH-----HHHHHHhcccCCCCEEecCCCcC
Confidence 566677788888888887773 444455445 7777777776542210 01123345567788888888776
Q ss_pred ccCccccccc-CCCchhhhhheeeecccCCC----CcCCcccccccccceeeeccCCCCCc
Q 017975 300 RGSRGVENFL-KFPKLQNITQALHIKDCNSL----PLNLLHLANMEHLQLFSIWDSNLEDW 355 (363)
Q Consensus 300 ~~~~~~~~l~-~l~~l~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~c~~l~~ 355 (363)
.+... ..+. .+..-...|++|++++|... ......+..+++|+.+++++|.....
T Consensus 234 ~~~~~-~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 234 TDAGA-AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred chHHH-HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 54211 1111 11111123488888887632 11123456667888889988887654
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.86 E-value=4.2e-10 Score=102.55 Aligned_cols=182 Identities=25% Similarity=0.229 Sum_probs=119.0
Q ss_pred ccceEEEeeccccccc--------CCCCCCCCccEEEeccCCccccchHHhcCCCC---CCEEEcccCCCcc-----ccC
Q 017975 162 EGVKRISLMENEIQSL--------PQIPTCPRLQTLLLEYNHIEEITESFFQSLPS---LRVLNLSVNHYLT-----ELP 225 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l--------~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~---L~~L~L~~~~~~~-----~lp 225 (363)
+.++++++.++.+... ..+..+++|+.|++++|.+....+..+..+.. |++|++++|+ +. .+.
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~ 129 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLA 129 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHH
Confidence 4577788777765521 12456889999999999887544444555544 9999999994 44 334
Q ss_pred ccccCC-CCCCEEEccCCCCCc-----cchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEE
Q 017975 226 VGISSL-VSLHHLDLSSTKVRG-----LPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALS 298 (363)
Q Consensus 226 ~~i~~L-~~L~~L~l~~~~l~~-----lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~ 298 (363)
..+..+ ++|+.|++++|.++. ++..+..+. |+.|+++.|.+..-. ....+..+...++|+.|++.+|.
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG-----IRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH-----HHHHHHHHHhCCCCCEEeccCCc
Confidence 556677 899999999998883 445555555 888888887765210 00112334455699999999988
Q ss_pred eccCccc---ccccCCCchhhhhheeeecccCCCCcCCcccc-----cccccceeeeccCCCC
Q 017975 299 LRGSRGV---ENFLKFPKLQNITQALHIKDCNSLPLNLLHLA-----NMEHLQLFSIWDSNLE 353 (363)
Q Consensus 299 ~~~~~~~---~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~c~~l 353 (363)
+.+.... ..+..++++ ++|++++|......+..+. ..+.|+.|++++|.+.
T Consensus 205 i~~~~~~~l~~~~~~~~~L----~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 205 LTDEGASALAETLASLKSL----EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred cChHHHHHHHHHhcccCCC----CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 7543211 122333444 9999999864221122221 2479999999999875
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=5.3e-10 Score=96.14 Aligned_cols=127 Identities=25% Similarity=0.267 Sum_probs=67.7
Q ss_pred CCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhcccc
Q 017975 183 CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHC 261 (363)
Q Consensus 183 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~ 261 (363)
.+.|..+|+++|.++.+..+ ..-++.+|+|++|.| .+..+- ++..|++|+.|||++|.+.++-..-.+|- ...|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N-~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDES-VKLAPKLRRLILSQN-RIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccchhhhhhh-hhhccceeEEecccc-ceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 34566666666666666555 566666666666666 455443 36666666666666665554432222222 344444
Q ss_pred CcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccC
Q 017975 262 GSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCN 327 (363)
Q Consensus 262 ~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~ 327 (363)
+.|.++.+ ..++.+-+|..|++.+|++........++++|.+ +.+.+.+|+
T Consensus 360 a~N~iE~L-----------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL----E~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNKIETL-----------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL----ETLRLTGNP 410 (490)
T ss_pred hhhhHhhh-----------hhhHhhhhheeccccccchhhHHHhcccccccHH----HHHhhcCCC
Confidence 45554443 2455555556666665555444444444444444 444444443
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.80 E-value=2.9e-09 Score=100.17 Aligned_cols=165 Identities=26% Similarity=0.373 Sum_probs=134.5
Q ss_pred eEEecCCCCCCCccccccc--cceEEEeecccccccC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975 144 FLVRAGVGLTDAPKIEEWE--GVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~--~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 220 (363)
.+......+..++...... +++.|++..|.+..+| .+..+++|+.|++++|.+..+++. .+.++.|+.|++++| .
T Consensus 120 ~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N-~ 197 (394)
T COG4886 120 SLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGN-K 197 (394)
T ss_pred EEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh-hhhhhhhhheeccCC-c
Confidence 4455566666676655554 8999999999999995 789999999999999999999886 458999999999999 8
Q ss_pred ccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEe
Q 017975 221 LTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSL 299 (363)
Q Consensus 221 ~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~ 299 (363)
+..+|..+..+.+|++|.+++|.+...|..+.++. +..+.+.+|++..++ ..++.+.+++.|++.+|.+
T Consensus 198 i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~----------~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 198 ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP----------ESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeecc----------chhccccccceeccccccc
Confidence 99999888888889999999998888888888888 888778888876655 6777788888888888888
Q ss_pred ccCcccccccCCCchhhhhheeeecccC
Q 017975 300 RGSRGVENFLKFPKLQNITQALHIKDCN 327 (363)
Q Consensus 300 ~~~~~~~~l~~l~~l~~~L~~L~l~~~~ 327 (363)
..... ++.+.++ +.|+++++.
T Consensus 268 ~~i~~---~~~~~~l----~~L~~s~n~ 288 (394)
T COG4886 268 SSISS---LGSLTNL----RELDLSGNS 288 (394)
T ss_pred ccccc---ccccCcc----CEEeccCcc
Confidence 76543 5555555 777877754
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.80 E-value=2.5e-10 Score=101.47 Aligned_cols=199 Identities=20% Similarity=0.264 Sum_probs=130.1
Q ss_pred cceeEEecCCCCCCCc--cccccccceEEEeecccccccC--CCCCCCCccEEEecc-CCccccchHHhcCCCCCCEEEc
Q 017975 141 EEKFLVRAGVGLTDAP--KIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEY-NHIEEITESFFQSLPSLRVLNL 215 (363)
Q Consensus 141 ~~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L 215 (363)
+...+..+.++++.+| .++.++++|+|++++|.|+.+. .|..++.|..|-+.+ |+|+.++.+.|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3344556667777776 4778899999999999998874 366777776665555 7787777777666555555555
Q ss_pred ccCC-----------------------CccccCc-cccCCCCCCEEEccCCCC---------------------------
Q 017975 216 SVNH-----------------------YLTELPV-GISSLVSLHHLDLSSTKV--------------------------- 244 (363)
Q Consensus 216 ~~~~-----------------------~~~~lp~-~i~~L~~L~~L~l~~~~l--------------------------- 244 (363)
.-|+ .+..++. ++..+..++++.+..|.+
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 4442 3344443 455555555555443320
Q ss_pred ---------------------Ccc--------------ch-hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhc
Q 017975 245 ---------------------RGL--------------PQ-ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIH 287 (363)
Q Consensus 245 ---------------------~~l--------------P~-~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~ 287 (363)
+++ |. -+..|. |+.|++++|.++.+. +..+.+..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~---------~~aFe~~a 298 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE---------DGAFEGAA 298 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh---------hhhhcchh
Confidence 000 10 122233 455555555554443 36788889
Q ss_pred cccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975 288 CLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE 353 (363)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l 353 (363)
.++.|.+..|++..... ..|.++.++ +.|+|.+|+.....+..|..+.+|.+|.+-+|+..
T Consensus 299 ~l~eL~L~~N~l~~v~~-~~f~~ls~L----~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSS-GMFQGLSGL----KTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhhhcCcchHHHHHH-Hhhhccccc----eeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 99999999998765543 456666666 88999998876666788999999999999887753
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=5.9e-09 Score=70.10 Aligned_cols=60 Identities=42% Similarity=0.615 Sum_probs=46.6
Q ss_pred CCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEccCCCC
Q 017975 184 PRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKV 244 (363)
Q Consensus 184 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l 244 (363)
++|++|++++|.++.+++..|.++++|++|++++| .++.+| ..+.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46788888888888888777888888888888888 556654 4678888888888888764
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.2e-08 Score=92.14 Aligned_cols=181 Identities=23% Similarity=0.213 Sum_probs=86.6
Q ss_pred ccccceEEEeecccccccCC----CCCCCCccEEEeccCCccccchH-HhcCCCCCCEEEcccCCCccc--cCccccCCC
Q 017975 160 EWEGVKRISLMENEIQSLPQ----IPTCPRLQTLLLEYNHIEEITES-FFQSLPSLRVLNLSVNHYLTE--LPVGISSLV 232 (363)
Q Consensus 160 ~~~~l~~L~l~~~~~~~l~~----~~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~--lp~~i~~L~ 232 (363)
.+++++.|+++.|-+..+.. ...+++|+.|+++.|.+.....+ .-..+++|+.|.|++| .+.. +-.-...++
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTFP 222 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccC-CCCHHHHHHHHHhCC
Confidence 34555555555554443211 23455555555555544322111 0123455555555555 3331 111223345
Q ss_pred CCCEEEccCCC-CCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccc--c-
Q 017975 233 SLHHLDLSSTK-VRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVE--N- 307 (363)
Q Consensus 233 ~L~~L~l~~~~-l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~- 307 (363)
+|+.|++.+|. +..--.+...++ |+.|+++.|.+-.++ .....+.++.|+.|.+..+.+.+...++ +
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~--------~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~ 294 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD--------QGYKVGTLPGLNQLNLSSTGIASIAEPDVESL 294 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc--------cccccccccchhhhhccccCcchhcCCCccch
Confidence 55555555552 111111222233 566666666554443 2234556667777777666655432211 1
Q ss_pred --ccCCCchhhhhheeeecccCC--CCcCCcccccccccceeeeccCCCCC
Q 017975 308 --FLKFPKLQNITQALHIKDCNS--LPLNLLHLANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 308 --l~~l~~l~~~L~~L~l~~~~~--~~~~~~~l~~l~~L~~L~l~~c~~l~ 354 (363)
...++++ ++|++..|+- .+. ...+..+++|+.|.+.+|.+..
T Consensus 295 ~kt~~f~kL----~~L~i~~N~I~~w~s-l~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 295 DKTHTFPKL----EYLNISENNIRDWRS-LNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhcccccc----eeeecccCccccccc-cchhhccchhhhhhcccccccc
Confidence 1222333 7777777653 222 4456666677777776666543
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=1e-08 Score=96.89 Aligned_cols=175 Identities=23% Similarity=0.371 Sum_probs=118.4
Q ss_pred ccccccceEEEeecccccccCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCE
Q 017975 158 IEEWEGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHH 236 (363)
Q Consensus 158 ~~~~~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 236 (363)
+..+.++..+++..|.++.+.. +..+++|++|++++|.++.+.+ +..+..|+.|++++| .+..++ .+..+..|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence 5566789999999999999888 8889999999999999988877 778888999999999 777766 6777899999
Q ss_pred EEccCCCCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCch
Q 017975 237 LDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL 314 (363)
Q Consensus 237 L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l 314 (363)
+++++|.+..++.. ...+. ++.+.++.|.+..+. .+..+..+..+.+..|.+....+.. .+...
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-----------~~~~~~~l~~~~l~~n~i~~~~~l~---~~~~~ 232 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-----------GLDLLKKLVLLSLLDNKISKLEGLN---ELVML 232 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-----------chHHHHHHHHhhcccccceeccCcc---cchhH
Confidence 99999998888664 35555 777778888776553 3344444444455555444332211 11110
Q ss_pred hhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975 315 QNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE 353 (363)
Q Consensus 315 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l 353 (363)
.++.++++++..... ...+..+..+..|++.++...
T Consensus 233 --~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 233 --HLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred --HHHHHhcccCccccc-cccccccccccccchhhcccc
Confidence 136666666543211 134555556666666655543
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.57 E-value=7.5e-08 Score=64.68 Aligned_cols=58 Identities=33% Similarity=0.578 Sum_probs=53.7
Q ss_pred ccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975 162 EGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH 219 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~ 219 (363)
++++.|++.+|.++.+| .+..+++|++|++++|.++.+++..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 47899999999999998 47889999999999999999999889999999999999993
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.54 E-value=1.5e-07 Score=93.26 Aligned_cols=81 Identities=28% Similarity=0.404 Sum_probs=39.5
Q ss_pred ccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCC-ccchhhhccc-hhccccCc
Q 017975 186 LQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVR-GLPQELKALV-LRMLHCGS 263 (363)
Q Consensus 186 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~-~lP~~i~~L~-L~~L~~~~ 263 (363)
++.|+|++|.+....+..++++++|+.|+|++|.....+|..++.+++|++|+|++|++. .+|..++.+. |+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 444555555544333333555555555555555333345555555555555555555544 2455555555 55555555
Q ss_pred Ccc
Q 017975 264 NHW 266 (363)
Q Consensus 264 ~~l 266 (363)
|.+
T Consensus 500 N~l 502 (623)
T PLN03150 500 NSL 502 (623)
T ss_pred Ccc
Confidence 443
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3e-08 Score=89.59 Aligned_cols=180 Identities=22% Similarity=0.263 Sum_probs=118.6
Q ss_pred cccccceEEEeecccccccC---CCCCCCCccEEEeccCCccccc--hHHhcCCCCCCEEEcccCCCccccCcc--ccCC
Q 017975 159 EEWEGVKRISLMENEIQSLP---QIPTCPRLQTLLLEYNHIEEIT--ESFFQSLPSLRVLNLSVNHYLTELPVG--ISSL 231 (363)
Q Consensus 159 ~~~~~l~~L~l~~~~~~~l~---~~~~l~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~L~~~~~~~~lp~~--i~~L 231 (363)
..+++||.+++.+..+...+ -...+++++.|++++|-+.... ..+...+++|+.|+|+.|+ +...-++ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhh
Confidence 34567888888887776665 3567889999999988654422 2346788999999999883 3332211 2356
Q ss_pred CCCCEEEccCCCCCccchhhhcc----c-hhccccCcCc-cCcCCCCCCCCCCcccchhhhccccccceEEEEeccCccc
Q 017975 232 VSLHHLDLSSTKVRGLPQELKAL----V-LRMLHCGSNH-WPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGV 305 (363)
Q Consensus 232 ~~L~~L~l~~~~l~~lP~~i~~L----~-L~~L~~~~~~-l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 305 (363)
.+|+.|.|++|.++. .++... + |..|++..|. +.. ......-++.|+.|++.+|.+......
T Consensus 197 ~~lK~L~l~~CGls~--k~V~~~~~~fPsl~~L~L~~N~~~~~----------~~~~~~i~~~L~~LdLs~N~li~~~~~ 264 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSW--KDVQWILLTFPSLEVLYLEANEIILI----------KATSTKILQTLQELDLSNNNLIDFDQG 264 (505)
T ss_pred hhhheEEeccCCCCH--HHHHHHHHhCCcHHHhhhhcccccce----------ecchhhhhhHHhhccccCCcccccccc
Confidence 788999999998873 222222 2 6666666663 111 113345577888999988888766655
Q ss_pred ccccCCCchhhhhheeeecccCCCCcC-Cc-----ccccccccceeeeccCCCCCc
Q 017975 306 ENFLKFPKLQNITQALHIKDCNSLPLN-LL-----HLANMEHLQLFSIWDSNLEDW 355 (363)
Q Consensus 306 ~~l~~l~~l~~~L~~L~l~~~~~~~~~-~~-----~l~~l~~L~~L~l~~c~~l~~ 355 (363)
...+.++.+ ..|+++.|...... +. ....+++|+.|++..|++.+|
T Consensus 265 ~~~~~l~~L----~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 265 YKVGTLPGL----NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred cccccccch----hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence 566777777 77888887741111 11 145688899999999888544
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.49 E-value=2e-07 Score=92.27 Aligned_cols=90 Identities=27% Similarity=0.423 Sum_probs=45.1
Q ss_pred ceEEEeecccccc-cC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccC
Q 017975 164 VKRISLMENEIQS-LP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSS 241 (363)
Q Consensus 164 l~~L~l~~~~~~~-l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 241 (363)
++.|++.+|.+.. +| .+..+++|+.|++++|.+....+..++.+++|++|+|++|.....+|+.++++++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 4445555554442 22 244555555555555555433332355555555555555543345555555555555555555
Q ss_pred CCCC-ccchhhhc
Q 017975 242 TKVR-GLPQELKA 253 (363)
Q Consensus 242 ~~l~-~lP~~i~~ 253 (363)
|++. .+|..++.
T Consensus 500 N~l~g~iP~~l~~ 512 (623)
T PLN03150 500 NSLSGRVPAALGG 512 (623)
T ss_pred CcccccCChHHhh
Confidence 5554 24555443
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.47 E-value=3.7e-07 Score=83.87 Aligned_cols=84 Identities=20% Similarity=0.378 Sum_probs=45.1
Q ss_pred ccccceEEEeecccccccCCCCCCCCccEEEeccC-CccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEE
Q 017975 160 EWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYN-HIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLD 238 (363)
Q Consensus 160 ~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 238 (363)
.+.++++|+++++.++.+|.+ ..+|+.|.+.++ .++.+|.. + ..+|++|++++|..+..+|.+ |++|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceEE
Confidence 345666777776666666632 235666666654 34444432 2 245666666666555555533 44555
Q ss_pred ccCCC---CCccchhhhcc
Q 017975 239 LSSTK---VRGLPQELKAL 254 (363)
Q Consensus 239 l~~~~---l~~lP~~i~~L 254 (363)
++++. +..+|+++..|
T Consensus 119 L~~n~~~~L~~LPssLk~L 137 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSL 137 (426)
T ss_pred eCCCCCcccccCcchHhhe
Confidence 55443 34455554433
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.40 E-value=1.4e-08 Score=97.07 Aligned_cols=162 Identities=25% Similarity=0.339 Sum_probs=94.0
Q ss_pred cCCCCCCCccccccccceEEEeecccccccCCC---------------------------------CCCCCccEEEeccC
Q 017975 148 AGVGLTDAPKIEEWEGVKRISLMENEIQSLPQI---------------------------------PTCPRLQTLLLEYN 194 (363)
Q Consensus 148 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~---------------------------------~~l~~L~~L~l~~~ 194 (363)
.+.+-+..-++..+..+|+|.+.++.+..+-++ .....|.+.+.++|
T Consensus 95 pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN 174 (1096)
T KOG1859|consen 95 PARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN 174 (1096)
T ss_pred CCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh
Confidence 333444445677788999999998876432211 11223455555666
Q ss_pred CccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccch-hhhccchhccccCcCccCcCCCCC
Q 017975 195 HIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQ-ELKALVLRMLHCGSNHWPIAEEGN 273 (363)
Q Consensus 195 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~L~~L~~~~~~l~~lp~~~ 273 (363)
.+..+..+ +.-++.|+.|||++| .++..- .+..+++|++|||++|.++.+|. +.....|..|.+++|-++++
T Consensus 175 ~L~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL---- 247 (1096)
T KOG1859|consen 175 RLVLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL---- 247 (1096)
T ss_pred hHHhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh----
Confidence 55554444 566667777777777 444443 66667777777777777766663 22222255666666666555
Q ss_pred CCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccC
Q 017975 274 VLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCN 327 (363)
Q Consensus 274 l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~ 327 (363)
..+.+|.+|+.|+++.|-+.+-....-+..+..| +.|+|.+|.
T Consensus 248 -------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L----~~L~LeGNP 290 (1096)
T KOG1859|consen 248 -------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL----IVLWLEGNP 290 (1096)
T ss_pred -------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHH----HHHhhcCCc
Confidence 3566777777777777766544332223333333 666666655
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=8.6e-09 Score=88.72 Aligned_cols=181 Identities=22% Similarity=0.294 Sum_probs=125.7
Q ss_pred ccceEEEeecccccc--cC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC--ccccCCCCCCE
Q 017975 162 EGVKRISLMENEIQS--LP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP--VGISSLVSLHH 236 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~--l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~ 236 (363)
..+++|+++...++. +. -+..+.+|+.|.+.++.+.+-....+.+-.+|+.|++++|..+++.. --+.++..|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 358889998877654 11 24678899999999999887665558888999999999998887643 23678899999
Q ss_pred EEccCCCCCc--cchhhhccc--hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCC
Q 017975 237 LDLSSTKVRG--LPQELKALV--LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFP 312 (363)
Q Consensus 237 L~l~~~~l~~--lP~~i~~L~--L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 312 (363)
|++++|.+.. +-..+.... |..|++++.+ .|+..-........+++|.+|+++++......-...+..++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r------rnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR------RNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhH------hhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 9999996543 111122222 4444443322 01111122344567889999999998765554445566666
Q ss_pred chhhhhheeeecccCC-CCcCCcccccccccceeeeccCCC
Q 017975 313 KLQNITQALHIKDCNS-LPLNLLHLANMEHLQLFSIWDSNL 352 (363)
Q Consensus 313 ~l~~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~c~~ 352 (363)
.+ ++|+++.|.. .|...-.+...++|.+|++.||-.
T Consensus 339 ~L----~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 339 YL----QHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hh----eeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 66 9999999987 444456688999999999999853
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.38 E-value=4.8e-07 Score=55.98 Aligned_cols=39 Identities=36% Similarity=0.558 Sum_probs=24.5
Q ss_pred CCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccc
Q 017975 209 SLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLP 248 (363)
Q Consensus 209 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP 248 (363)
+|++|++++| .++.+|..+++|++|++|++++|.++.+|
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 5666666666 56666655666777777777766666554
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=9.6e-08 Score=73.10 Aligned_cols=107 Identities=19% Similarity=0.334 Sum_probs=86.3
Q ss_pred cceEEEeecccccccCC----CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEE
Q 017975 163 GVKRISLMENEIQSLPQ----IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLD 238 (363)
Q Consensus 163 ~l~~L~l~~~~~~~l~~----~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 238 (363)
.+..++++.+.+-.++. +....+|...++++|.+...|+.+...++.+..|++++| .+..+|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 34456666665554432 456677888899999999999887777788999999999 7888999999999999999
Q ss_pred ccCCCCCccchhhhccc-hhccccCcCccCcCC
Q 017975 239 LSSTKVRGLPQELKALV-LRMLHCGSNHWPIAE 270 (363)
Q Consensus 239 l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp 270 (363)
++.|.+...|.-+..|. +..|+...|.+..+|
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 99999999998888888 888888888877776
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.17 E-value=3.6e-07 Score=86.43 Aligned_cols=124 Identities=27% Similarity=0.341 Sum_probs=97.4
Q ss_pred eeEEecCCCCCCCcc-ccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975 143 KFLVRAGVGLTDAPK-IEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 221 (363)
..+...+..+..+.. +..+.++++|++++|.|+.+..+..++.|+.|++.+|.++.+.. +..+..|+.+++++| .+
T Consensus 98 ~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n-~i 174 (414)
T KOG0531|consen 98 EALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYN-RI 174 (414)
T ss_pred eeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC--CccchhhhcccCCcc-hh
Confidence 345566677777777 78899999999999999999999999999999999999998866 677999999999999 77
Q ss_pred cccCcc-ccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCC
Q 017975 222 TELPVG-ISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAE 270 (363)
Q Consensus 222 ~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp 270 (363)
..++.. ...+.+|+.+.+.+|.+..+. .+..+. +..+++..|.+..+-
T Consensus 175 ~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 175 VDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred hhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceecc
Confidence 777643 588899999999999887653 222222 333345566655443
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.08 E-value=6e-06 Score=51.03 Aligned_cols=40 Identities=33% Similarity=0.542 Sum_probs=29.8
Q ss_pred CCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC
Q 017975 184 PRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP 225 (363)
Q Consensus 184 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp 225 (363)
++|++|++++|.++.+++. ++++++|++|++++| .++.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCch-HhCCCCCCEEEecCC-CCCCCc
Confidence 4688888888888888776 788888888888888 566554
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=2.5e-05 Score=72.06 Aligned_cols=83 Identities=19% Similarity=0.304 Sum_probs=63.9
Q ss_pred CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCC-CCCccchhhhccchhc
Q 017975 180 IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSST-KVRGLPQELKALVLRM 258 (363)
Q Consensus 180 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~-~l~~lP~~i~~L~L~~ 258 (363)
+..+++++.|++++|.++.+|. + ..+|+.|.+++|..++.+|..+. .+|++|++++| .+..+|.++..|.+..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~ 121 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRSLEIKG 121 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccceEEeCC
Confidence 4456889999999999888872 2 34799999999989999997664 68999999999 8888998876665432
Q ss_pred cccCcCccCcCC
Q 017975 259 LHCGSNHWPIAE 270 (363)
Q Consensus 259 L~~~~~~l~~lp 270 (363)
..++.+..+|
T Consensus 122 --n~~~~L~~LP 131 (426)
T PRK15386 122 --SATDSIKNVP 131 (426)
T ss_pred --CCCcccccCc
Confidence 3334456666
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=8.6e-06 Score=70.59 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=35.2
Q ss_pred hccccccceEEEEeccCcccccccCCCchhhhhheeeecccCC-CCcCCcccccccccceeeeccCCCCCccc
Q 017975 286 IHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNS-LPLNLLHLANMEHLQLFSIWDSNLEDWNV 357 (363)
Q Consensus 286 l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~c~~l~~~~ 357 (363)
.+++..+-+..+.+...........++.+ -.|++..++. --..+..+..++.|..|.+++++.++.+-
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~----~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSL----SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcc----hhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 34455555555544433333333444444 3455555442 12224456677777777777777765543
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.93 E-value=3.4e-07 Score=87.81 Aligned_cols=130 Identities=22% Similarity=0.251 Sum_probs=90.3
Q ss_pred cccccceEEEeecccccccC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEE
Q 017975 159 EEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHL 237 (363)
Q Consensus 159 ~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 237 (363)
..|..+...+.++|.+..+. .+.-++.|+.|+|++|++++.. .+..+++|+.|||+.| .+..+|.-=..--+|+.|
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLL 237 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhhheee
Confidence 35667777777777776654 3556677888888888887765 3778888888888888 677777422222248888
Q ss_pred EccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEec
Q 017975 238 DLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR 300 (363)
Q Consensus 238 ~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~ 300 (363)
++++|.++.+ .++.+|. |+.||++.|-+.... .-..+..|..|+.|.+.+|.+.
T Consensus 238 ~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hs--------eL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 238 NLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHS--------ELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eecccHHHhh-hhHHhhhhhhccchhHhhhhcch--------hhhHHHHHHHHHHHhhcCCccc
Confidence 8888887777 4777787 888888887665432 1134566777777777777654
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.80 E-value=3.6e-06 Score=64.62 Aligned_cols=88 Identities=31% Similarity=0.460 Sum_probs=78.8
Q ss_pred ccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017975 162 EGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDL 239 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 239 (363)
.++...++++|.++++|. ...++.+.+|++++|.+.++|.. +..++.||.|+++.| .+...|..|..|.+|-+|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcC
Confidence 467788999999999885 24667899999999999999998 999999999999999 78888999999999999999
Q ss_pred cCCCCCccchhh
Q 017975 240 SSTKVRGLPQEL 251 (363)
Q Consensus 240 ~~~~l~~lP~~i 251 (363)
.++.+..+|-.+
T Consensus 131 ~~na~~eid~dl 142 (177)
T KOG4579|consen 131 PENARAEIDVDL 142 (177)
T ss_pred CCCccccCcHHH
Confidence 999999998763
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=6.7e-05 Score=61.59 Aligned_cols=85 Identities=33% Similarity=0.444 Sum_probs=68.8
Q ss_pred cceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC--ccccCCCCCCEEEcc
Q 017975 163 GVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP--VGISSLVSLHHLDLS 240 (363)
Q Consensus 163 ~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~ 240 (363)
....++++.|++..++.+..++.|.+|.+.+|+++.+.+..-.-+++|..|.|.+| .+.++- ..+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 56678999999998888999999999999999999988875556778999999998 666553 246677889999988
Q ss_pred CCCCCccc
Q 017975 241 STKVRGLP 248 (363)
Q Consensus 241 ~~~l~~lP 248 (363)
+|.+..-+
T Consensus 122 ~Npv~~k~ 129 (233)
T KOG1644|consen 122 GNPVEHKK 129 (233)
T ss_pred CCchhccc
Confidence 88776543
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=7.9e-06 Score=70.82 Aligned_cols=183 Identities=25% Similarity=0.291 Sum_probs=110.5
Q ss_pred ccceEEEeecccccccCC----CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC-ccccCccccCCCCCCE
Q 017975 162 EGVKRISLMENEIQSLPQ----IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY-LTELPVGISSLVSLHH 236 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l~~----~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~-~~~lp~~i~~L~~L~~ 236 (363)
+.++.+++.+|.+....+ +.+++.|++|+++.|.+.......--...+|++|.|.|+.. .+..-..+..++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 567888888888877654 35788899999998877654433113567888888888732 2234456677777888
Q ss_pred EEccCCCCCcc----------chhhhccc----hhccccCcCcc-CcCCC--------CCCCCCCcccchhhhccccccc
Q 017975 237 LDLSSTKVRGL----------PQELKALV----LRMLHCGSNHW-PIAEE--------GNVLSDDAESLMKEIHCLEQLN 293 (363)
Q Consensus 237 L~l~~~~l~~l----------P~~i~~L~----L~~L~~~~~~l-~~lp~--------~~l~~l~~~~~l~~l~~L~~L~ 293 (363)
|.++.|+++.+ ...+..+. +..+...-+++ +.+|. +-+++.........++.+.-|.
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 88877755432 11222221 11111222222 23343 2233444445556667777888
Q ss_pred eEEEEeccCcccccccCCCchhhhhheeeecccCCCCcC------Ccccccccccceeeec
Q 017975 294 LIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLN------LLHLANMEHLQLFSIW 348 (363)
Q Consensus 294 l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~------~~~l~~l~~L~~L~l~ 348 (363)
+..+++.+....+.+..++.+ .-|.+++++..... .--+..|++++.|+=+
T Consensus 231 L~~~~idswasvD~Ln~f~~l----~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQL----VDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hcccccccHHHHHHHcCCchh----heeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 888888777777777777777 77777776531110 1125678888887644
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.51 E-value=7.2e-06 Score=72.49 Aligned_cols=185 Identities=18% Similarity=0.201 Sum_probs=105.6
Q ss_pred ccceEEEeecccccc--cCC----CCCCCCccEEEeccCCccccchHH-------------hcCCCCCCEEEcccCCCcc
Q 017975 162 EGVKRISLMENEIQS--LPQ----IPTCPRLQTLLLEYNHIEEITESF-------------FQSLPSLRVLNLSVNHYLT 222 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~--l~~----~~~l~~L~~L~l~~~~l~~~~~~~-------------~~~l~~L~~L~L~~~~~~~ 222 (363)
++++.++++.|.+.. ++. +..+..|+.|.+.+|.+...-... ...-+.||++...+| .+.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLE 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccc
Confidence 467777777776542 111 345667777777777543221111 334556777777777 333
Q ss_pred cc-----CccccCCCCCCEEEccCCCCCc-----cchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccc
Q 017975 223 EL-----PVGISSLVSLHHLDLSSTKVRG-----LPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQ 291 (363)
Q Consensus 223 ~l-----p~~i~~L~~L~~L~l~~~~l~~-----lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~ 291 (363)
.- -..+...+.|+.+.+..|.|.. +-..+...+ |+.|++..|.++.-- +......+..+++|+.
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg-----s~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG-----SVALAKALSSWPHLRE 245 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH-----HHHHHHHhcccchhee
Confidence 22 2345556677777777776542 222334444 666666666543211 0022244556778888
Q ss_pred cceEEEEeccCcccccccCCCchhhhhheeeecccCCC----CcCCcccccccccceeeeccCCC
Q 017975 292 LNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSL----PLNLLHLANMEHLQLFSIWDSNL 352 (363)
Q Consensus 292 L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~c~~ 352 (363)
|++.+|.+...........+......|+.|.+.+|... .....++...+.|..|+|++|.+
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 88888887665332222223233334488888887631 11223466688899999999987
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=3e-05 Score=77.14 Aligned_cols=87 Identities=22% Similarity=0.252 Sum_probs=47.6
Q ss_pred cCCCCCCEEEcccCCCcc-ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccc
Q 017975 205 QSLPSLRVLNLSVNHYLT-ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESL 282 (363)
Q Consensus 205 ~~l~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~ 282 (363)
..+|.|+.|.+.+-.... ++-.-..++++|..||+|+|+++.+ .++++|+ |+.|.+.+=.+..-. .-..
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~--------~l~~ 215 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQ--------DLID 215 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchh--------hHHH
Confidence 345666666666642211 1222344566777777777777766 6666776 666555443322211 1124
Q ss_pred hhhhccccccceEEEEec
Q 017975 283 MKEIHCLEQLNLIALSLR 300 (363)
Q Consensus 283 l~~l~~L~~L~l~~~~~~ 300 (363)
+.+|++|+.|+++.-...
T Consensus 216 LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HhcccCCCeeeccccccc
Confidence 556777777777665543
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.27 E-value=1.7e-05 Score=70.16 Aligned_cols=192 Identities=18% Similarity=0.214 Sum_probs=97.3
Q ss_pred cccccceEEEeecccccc-----c-CCCCCCCCccEEEeccCC----ccccchH------HhcCCCCCCEEEcccCCCcc
Q 017975 159 EEWEGVKRISLMENEIQS-----L-PQIPTCPRLQTLLLEYNH----IEEITES------FFQSLPSLRVLNLSVNHYLT 222 (363)
Q Consensus 159 ~~~~~l~~L~l~~~~~~~-----l-~~~~~l~~L~~L~l~~~~----l~~~~~~------~~~~l~~L~~L~L~~~~~~~ 222 (363)
..+..+..+++++|.+.. + +.+.+.++|+..+++.-. ...+|+. .+...++|++||||.|..-.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 344567777777776532 1 123444456665555431 1112211 13344566666666664332
Q ss_pred ccCc----cccCCCCCCEEEccCCCCCccchhh-----h---------ccc-hhccccCcCccCcCCC----------CC
Q 017975 223 ELPV----GISSLVSLHHLDLSSTKVRGLPQEL-----K---------ALV-LRMLHCGSNHWPIAEE----------GN 273 (363)
Q Consensus 223 ~lp~----~i~~L~~L~~L~l~~~~l~~lP~~i-----~---------~L~-L~~L~~~~~~l~~lp~----------~~ 273 (363)
.-+. -|..+..|++|.|.+|.+...-... . .-. |+.+..+.|++..-+. ..
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 2222 2334556666666666554311110 0 001 5665566666554432 01
Q ss_pred CCCC-------------CcccchhhhccccccceEEEEeccCcc---cccccCCCchhhhhheeeecccCCCCc----CC
Q 017975 274 VLSD-------------DAESLMKEIHCLEQLNLIALSLRGSRG---VENFLKFPKLQNITQALHIKDCNSLPL----NL 333 (363)
Q Consensus 274 l~~l-------------~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~l~~~L~~L~l~~~~~~~~----~~ 333 (363)
+... -....+..+++|+.|++.+|.++.... ...+.+++++ +.|++++|..-.. ..
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L----~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL----RELNLGDCLLENEGAIAFV 262 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh----eeecccccccccccHHHHH
Confidence 1100 122345678888888888888765422 1233444444 8888888873111 11
Q ss_pred ccc-ccccccceeeeccCCCCC
Q 017975 334 LHL-ANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 334 ~~l-~~l~~L~~L~l~~c~~l~ 354 (363)
..+ ...++|++|.+.+|.+..
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred HHHhccCCCCceeccCcchhHH
Confidence 122 236788999988887653
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.90 E-value=0.00062 Score=67.97 Aligned_cols=81 Identities=17% Similarity=0.306 Sum_probs=43.2
Q ss_pred cccceEEEeecccccc--cC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc--CccccCCCCCC
Q 017975 161 WEGVKRISLMENEIQS--LP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL--PVGISSLVSLH 235 (363)
Q Consensus 161 ~~~l~~L~l~~~~~~~--l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l--p~~i~~L~~L~ 235 (363)
+|.|++|.+.+-.+.. +. -..++++|+.||+++++++.+. + ++++++|++|.+.+- .+..- -..+.+|++|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~-G-IS~LknLq~L~mrnL-e~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS-G-ISRLKNLQVLSMRNL-EFESYQDLIDLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH-H-HhccccHHHHhccCC-CCCchhhHHHHhcccCCC
Confidence 4566666666543322 11 1345666666666666666652 2 566666666665554 22211 12455666666
Q ss_pred EEEccCCCC
Q 017975 236 HLDLSSTKV 244 (363)
Q Consensus 236 ~L~l~~~~l 244 (363)
.||+|....
T Consensus 224 vLDIS~~~~ 232 (699)
T KOG3665|consen 224 VLDISRDKN 232 (699)
T ss_pred eeecccccc
Confidence 666665533
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.88 E-value=0.00084 Score=55.28 Aligned_cols=129 Identities=18% Similarity=0.254 Sum_probs=78.3
Q ss_pred ceEEEeecccccccCCCC-CCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccC-CCCCCEEEccC
Q 017975 164 VKRISLMENEIQSLPQIP-TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISS-LVSLHHLDLSS 241 (363)
Q Consensus 164 l~~L~l~~~~~~~l~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~-L~~L~~L~l~~ 241 (363)
-+.+++.+..+..+...+ ...+...+|+++|.+..++. |..++.|.+|.+.+| .++.+-..+.. +++|+.|.+.+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecC
Confidence 344555555443332221 23456788899998877765 788889999999998 77777666665 45699999999
Q ss_pred CCCCccch--hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975 242 TKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG 301 (363)
Q Consensus 242 ~~l~~lP~--~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~ 301 (363)
|+|.++-. .+..++ |+.|.+-.|.++.-.. .-.-.+..+++|+.|+........
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~------YR~yvl~klp~l~~LDF~kVt~~E 154 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKN------YRLYVLYKLPSLRTLDFQKVTRKE 154 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccC------ceeEEEEecCcceEeehhhhhHHH
Confidence 98887521 112222 5555555555443321 111235556677777766655443
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.81 E-value=0.0004 Score=35.76 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=9.0
Q ss_pred CCEEEccCCCCCccchhhh
Q 017975 234 LHHLDLSSTKVRGLPQELK 252 (363)
Q Consensus 234 L~~L~l~~~~l~~lP~~i~ 252 (363)
|++|++++|+++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4445555554444444443
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.0011 Score=56.66 Aligned_cols=85 Identities=29% Similarity=0.452 Sum_probs=59.1
Q ss_pred ccccceEEEeecccccccCCCCCCCCccEEEeccC--Cccc-cchHHhcCCCCCCEEEcccCCCcc---ccCccccCCCC
Q 017975 160 EWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYN--HIEE-ITESFFQSLPSLRVLNLSVNHYLT---ELPVGISSLVS 233 (363)
Q Consensus 160 ~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~--~l~~-~~~~~~~~l~~L~~L~L~~~~~~~---~lp~~i~~L~~ 233 (363)
.+..+..+++.+..++.+..+..+++|+.|.++.| ++.. ++.- ..++++|++|++++| .+. +++ .+..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~lstl~-pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKDLSTLR-PLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-ccccccccc-hhhhhcc
Confidence 34567777777777777777888889999999888 4432 3332 456688999999988 443 222 4556677
Q ss_pred CCEEEccCCCCCcc
Q 017975 234 LHHLDLSSTKVRGL 247 (363)
Q Consensus 234 L~~L~l~~~~l~~l 247 (363)
|..|++..|..+.+
T Consensus 118 L~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNL 131 (260)
T ss_pred hhhhhcccCCcccc
Confidence 77888888766554
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.46 E-value=0.0017 Score=55.64 Aligned_cols=59 Identities=31% Similarity=0.371 Sum_probs=26.6
Q ss_pred CccEEEeccCCccccchHHhcCCCCCCEEEcccC--CCccccCccccCCCCCCEEEccCCCCC
Q 017975 185 RLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN--HYLTELPVGISSLVSLHHLDLSSTKVR 245 (363)
Q Consensus 185 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~--~~~~~lp~~i~~L~~L~~L~l~~~~l~ 245 (363)
.|+.|.+.+..++.+-. +-.|++|++|.++.| +....++-....+++|++|++++|+++
T Consensus 44 ~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred chhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33444444444333322 334455555555555 333333333444455555555555444
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.00042 Score=59.81 Aligned_cols=95 Identities=36% Similarity=0.452 Sum_probs=75.3
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccch-HHhcCCCCCCEEEcccCCCcc
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITE-SFFQSLPSLRVLNLSVNHYLT 222 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~L~~~~~~~ 222 (363)
.+.+-|.++.++.-...++.+..|+++-|.|+.+..+..+++|+.|+|..|.|..+.. .-+.++++||.|-|..|....
T Consensus 23 KLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 23 KLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred hhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence 3555677788888788899999999999999999999999999999999998877643 227899999999998885444
Q ss_pred ccCc-----cccCCCCCCEEE
Q 017975 223 ELPV-----GISSLVSLHHLD 238 (363)
Q Consensus 223 ~lp~-----~i~~L~~L~~L~ 238 (363)
+-+. .+.-|++|+.||
T Consensus 103 ~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 103 EAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccchhHHHHHHHHcccchhcc
Confidence 3332 244577787776
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.35 E-value=0.0017 Score=33.36 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=13.3
Q ss_pred CCCEEEcccCCCccccCccccC
Q 017975 209 SLRVLNLSVNHYLTELPVGISS 230 (363)
Q Consensus 209 ~L~~L~L~~~~~~~~lp~~i~~ 230 (363)
+|++||+++| .++.+|+++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4667777777 56666666554
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.00017 Score=62.85 Aligned_cols=160 Identities=18% Similarity=0.084 Sum_probs=98.6
Q ss_pred CCccEEEeccCCccc-cchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCC-CCCccch--hhhccc-hhc
Q 017975 184 PRLQTLLLEYNHIEE-ITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSST-KVRGLPQ--ELKALV-LRM 258 (363)
Q Consensus 184 ~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~-~l~~lP~--~i~~L~-L~~ 258 (363)
..|+.+|++...++. .....++.+.+|+.|.+.|+..-..+-..|.+-.+|+.|+++.| .+++... -+.+++ |..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 358899999987763 23344788889999999999655556667888889999999998 6665322 234444 666
Q ss_pred cccCcCccCcCCCCCCCCCCcccchhh-hccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcC-Cccc
Q 017975 259 LHCGSNHWPIAEEGNVLSDDAESLMKE-IHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLN-LLHL 336 (363)
Q Consensus 259 L~~~~~~l~~lp~~~l~~l~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~-~~~l 336 (363)
|+++...+..-- ....+.. -++|+.|+++++.-.-.. ..+..+..--+.+..|++++|..+... ...+
T Consensus 265 LNlsWc~l~~~~--------Vtv~V~hise~l~~LNlsG~rrnl~~--sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 265 LNLSWCFLFTEK--------VTVAVAHISETLTQLNLSGYRRNLQK--SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred cCchHhhccchh--------hhHHHhhhchhhhhhhhhhhHhhhhh--hHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence 666554432100 0011111 136777777765422111 111222111122388999998864442 3447
Q ss_pred ccccccceeeeccCCCC
Q 017975 337 ANMEHLQLFSIWDSNLE 353 (363)
Q Consensus 337 ~~l~~L~~L~l~~c~~l 353 (363)
.+++.|++|.++.|...
T Consensus 335 ~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDI 351 (419)
T ss_pred HhcchheeeehhhhcCC
Confidence 78999999999999753
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.17 E-value=0.00068 Score=58.37 Aligned_cols=188 Identities=20% Similarity=0.258 Sum_probs=104.3
Q ss_pred ccccceEEEeecccccc-----cC-CCCCCCCccEEEeccCCcc----ccch------HHhcCCCCCCEEEcccCCCccc
Q 017975 160 EWEGVKRISLMENEIQS-----LP-QIPTCPRLQTLLLEYNHIE----EITE------SFFQSLPSLRVLNLSVNHYLTE 223 (363)
Q Consensus 160 ~~~~l~~L~l~~~~~~~-----l~-~~~~l~~L~~L~l~~~~l~----~~~~------~~~~~l~~L~~L~L~~~~~~~~ 223 (363)
.+..+..+++++|.+.. +. .+.+-++|++.+++.-... .++. ..+-++++|+..+||.|....+
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 35678899999997754 11 2456778888887754211 1111 1256789999999999976666
Q ss_pred cCcc----ccCCCCCCEEEccCCCCCccc-hhhh----cc---------c-hhccccCcCccCcCCCCCCCCCCcccchh
Q 017975 224 LPVG----ISSLVSLHHLDLSSTKVRGLP-QELK----AL---------V-LRMLHCGSNHWPIAEEGNVLSDDAESLMK 284 (363)
Q Consensus 224 lp~~----i~~L~~L~~L~l~~~~l~~lP-~~i~----~L---------~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~ 284 (363)
.|+. |+.-+.|.+|.+++|.+-.+. ..|+ .| + |+....+.|++...|. . .....+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~----~-~~a~~l~ 182 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK----E-LSAALLE 182 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH----H-HHHHHHH
Confidence 6654 556778999999998765432 1222 22 1 6665566666654441 0 0111222
Q ss_pred hhccccccceEEEEeccCcccc--cccCCCchhhhhheeeecccCCC--Cc--CCcccccccccceeeeccCCCCC
Q 017975 285 EIHCLEQLNLIALSLRGSRGVE--NFLKFPKLQNITQALHIKDCNSL--PL--NLLHLANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 285 ~l~~L~~L~l~~~~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~--~~--~~~~l~~l~~L~~L~l~~c~~l~ 354 (363)
.=..|+.+.+..|.+.... .. .+.++.. ...|+.|++.+|... .+ .-..+..-+.|+.|.+..|-+..
T Consensus 183 sh~~lk~vki~qNgIrpeg-v~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEG-VTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred hhcCceeEEeeecCcCcch-hHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 2235666666666553220 00 0111111 122488888876521 00 01123334557888888887654
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.99 E-value=0.0047 Score=29.46 Aligned_cols=16 Identities=44% Similarity=0.787 Sum_probs=7.1
Q ss_pred CCCEEEccCCCCCccc
Q 017975 233 SLHHLDLSSTKVRGLP 248 (363)
Q Consensus 233 ~L~~L~l~~~~l~~lP 248 (363)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.0014 Score=56.63 Aligned_cols=89 Identities=22% Similarity=0.201 Sum_probs=62.4
Q ss_pred cCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccch
Q 017975 205 QSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLM 283 (363)
Q Consensus 205 ~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l 283 (363)
+.+.+.+.|+.-|| .+..+. -..+|+.|+.|.|+-|+|+.+- .+...+ |+.|++.-|.+.++. ...-+
T Consensus 16 sdl~~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sld--------EL~YL 84 (388)
T KOG2123|consen 16 SDLENVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLD--------ELEYL 84 (388)
T ss_pred hHHHHhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHH--------HHHHH
Confidence 34567778888888 676654 5568889999999999988873 444555 777777777765543 22456
Q ss_pred hhhccccccceEEEEeccCcc
Q 017975 284 KEIHCLEQLNLIALSLRGSRG 304 (363)
Q Consensus 284 ~~l~~L~~L~l~~~~~~~~~~ 304 (363)
.++++|+.|.+..|...+..+
T Consensus 85 knlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred hcCchhhhHhhccCCcccccc
Confidence 677788888888777665543
No 68
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.74 E-value=0.028 Score=30.00 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=16.2
Q ss_pred CCCCCEEEccCCCCCccchhhh
Q 017975 231 LVSLHHLDLSSTKVRGLPQELK 252 (363)
Q Consensus 231 L~~L~~L~l~~~~l~~lP~~i~ 252 (363)
|++|++|+|++|.++.+|....
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4577888888888888877643
No 69
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.74 E-value=0.028 Score=30.00 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=16.2
Q ss_pred CCCCCEEEccCCCCCccchhhh
Q 017975 231 LVSLHHLDLSSTKVRGLPQELK 252 (363)
Q Consensus 231 L~~L~~L~l~~~~l~~lP~~i~ 252 (363)
|++|++|+|++|.++.+|....
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4577888888888888877643
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.73 E-value=0.0085 Score=51.85 Aligned_cols=141 Identities=21% Similarity=0.203 Sum_probs=87.1
Q ss_pred CCCCCCCCccEEEeccCCccc-cc---hHHhcCCCCCCEEEcccCCCccccC--------------ccccCCCCCCEEEc
Q 017975 178 PQIPTCPRLQTLLLEYNHIEE-IT---ESFFQSLPSLRVLNLSVNHYLTELP--------------VGISSLVSLHHLDL 239 (363)
Q Consensus 178 ~~~~~l~~L~~L~l~~~~l~~-~~---~~~~~~l~~L~~L~L~~~~~~~~lp--------------~~i~~L~~L~~L~l 239 (363)
+.+.+|++|+..+++.|.+.. .| .+.+++-..|..|.+++| .+..+. +...+-+.|++...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 346789999999999997642 22 245788999999999999 665432 12345678999999
Q ss_pred cCCCCCccchhhhccc------hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcc---cccccC
Q 017975 240 SSTKVRGLPQELKALV------LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRG---VENFLK 310 (363)
Q Consensus 240 ~~~~l~~lP~~i~~L~------L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~l~~ 310 (363)
..|.+..-|....... |..+.+..|.++.=- ... -.-..+..+++|+.|++.+|.++.... ...+..
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpeg---v~~-L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEG---VTM-LAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcch---hHH-HHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence 9998887776544332 444444455542100 000 001234556788888888887764321 112233
Q ss_pred CCchhhhhheeeecccC
Q 017975 311 FPKLQNITQALHIKDCN 327 (363)
Q Consensus 311 l~~l~~~L~~L~l~~~~ 327 (363)
.+. |+.|.+.+|-
T Consensus 241 W~~----lrEL~lnDCl 253 (388)
T COG5238 241 WNL----LRELRLNDCL 253 (388)
T ss_pred cch----hhhccccchh
Confidence 333 4777877775
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.47 E-value=0.028 Score=26.74 Aligned_cols=16 Identities=63% Similarity=0.835 Sum_probs=7.7
Q ss_pred CCCEEEcccCCCccccC
Q 017975 209 SLRVLNLSVNHYLTELP 225 (363)
Q Consensus 209 ~L~~L~L~~~~~~~~lp 225 (363)
+|+.|++++| .++++|
T Consensus 2 ~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCC-CCCCCc
Confidence 5666666666 355554
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.27 E-value=0.0019 Score=54.50 Aligned_cols=85 Identities=24% Similarity=0.208 Sum_probs=53.5
Q ss_pred hcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccc
Q 017975 204 FQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESL 282 (363)
Q Consensus 204 ~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~ 282 (363)
+..++.-.+||++.+ .+..+-..++-++.|..|+++.+.+..+|+..+.+. +..++++.|..+..| .+
T Consensus 38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p----------~s 106 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP----------KS 106 (326)
T ss_pred hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC----------cc
Confidence 455566666666666 455555566666666667777666666777666666 666666666666665 45
Q ss_pred hhhhccccccceEEEEe
Q 017975 283 MKEIHCLEQLNLIALSL 299 (363)
Q Consensus 283 l~~l~~L~~L~l~~~~~ 299 (363)
.+..+.++.++.-++.+
T Consensus 107 ~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEF 123 (326)
T ss_pred ccccCCcchhhhccCcc
Confidence 55566666666555543
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.48 E-value=0.26 Score=37.94 Aligned_cols=83 Identities=18% Similarity=0.383 Sum_probs=42.1
Q ss_pred ccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCc-cccCCCCCCEEE
Q 017975 162 EGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLD 238 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~ 238 (363)
.+++.+.+.. .++.++ .+..+++|+.+.+..+ +..+....|.++..|+.+.+..+ +..++. .+..+.+|+.+.
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccccccc
Confidence 4566666653 455554 3566667777777664 66666666777777777777643 333333 345577777777
Q ss_pred ccCCCCCccch
Q 017975 239 LSSTKVRGLPQ 249 (363)
Q Consensus 239 l~~~~l~~lP~ 249 (363)
+..+ +..++.
T Consensus 88 ~~~~-~~~i~~ 97 (129)
T PF13306_consen 88 IPSN-ITEIGS 97 (129)
T ss_dssp ETTT--BEEHT
T ss_pred cCcc-ccEEch
Confidence 7554 555543
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.97 E-value=0.0028 Score=53.47 Aligned_cols=87 Identities=16% Similarity=0.123 Sum_probs=71.8
Q ss_pred cccccccceEEEeecccccccC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCC
Q 017975 157 KIEEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLH 235 (363)
Q Consensus 157 ~~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 235 (363)
++..+..+..|+++.|.+..+. .++.+..+..|+++.|.+..+|.+ ++.+..++.+++..| .....|.+.+.+++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKN-NHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhcc-chhhCCccccccCCcc
Confidence 4445567888888888766654 356677788899999999988888 888889999999888 8899999999999999
Q ss_pred EEEccCCCCC
Q 017975 236 HLDLSSTKVR 245 (363)
Q Consensus 236 ~L~l~~~~l~ 245 (363)
++++.+|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 9999998754
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.54 E-value=0.17 Score=26.89 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=10.5
Q ss_pred CCccEEEeccCCccccchHH
Q 017975 184 PRLQTLLLEYNHIEEITESF 203 (363)
Q Consensus 184 ~~L~~L~l~~~~l~~~~~~~ 203 (363)
++|++|++.+|.++.+|+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34555555555555555543
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.54 E-value=0.17 Score=26.89 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=10.5
Q ss_pred CCccEEEeccCCccccchHH
Q 017975 184 PRLQTLLLEYNHIEEITESF 203 (363)
Q Consensus 184 ~~L~~L~l~~~~l~~~~~~~ 203 (363)
++|++|++.+|.++.+|+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34555555555555555543
No 77
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.50 E-value=0.71 Score=48.48 Aligned_cols=117 Identities=17% Similarity=0.232 Sum_probs=74.4
Q ss_pred CccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccccccccchHHHHHHHHh-hcCCCCChhhhHHHhHhcCCCCCc
Q 017975 1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKF-SYDSLPNDELRSCLLYCCLFPEDS 79 (363)
Q Consensus 1 Iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~-sy~~L~~~~lk~cfl~~s~Fp~~~ 79 (363)
|.+.|+|.|+++..++..+....... ......+.... ...+.+.+.- -++.||+ +.+..+...|+++
T Consensus 211 l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~--- 278 (903)
T PRK04841 211 LCDDVEGWATALQLIALSARQNNSSL--HDSARRLAGIN------ASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR--- 278 (903)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhcCCC------chhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---
Confidence 35789999999999988775522100 11111111100 1134444333 3789999 8999999999986
Q ss_pred ccChHHHHHHHHHhCCccCcCHHHHHHHHHHhhcccC--C--CCceeechhHHHHHHHHh
Q 017975 80 EIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEE--G--GDHVKMHDMIRDMALWIA 135 (363)
Q Consensus 80 ~~~~~~li~~w~a~g~~~~~~~~~~~~~L~~rsli~~--~--~~~~~mhdl~~~~~~~i~ 135 (363)
.++.+ +.. .......+...+++|.+.+++.. + ...|+.|++++++.+.-.
T Consensus 279 ~~~~~-l~~-----~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 279 SMNDA-LIV-----RVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred cCCHH-HHH-----HHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 34433 222 22333347888999999999753 2 347899999999988654
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.09 E-value=0.057 Score=44.76 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=29.3
Q ss_pred cccCCCchhhhhheeeecccCCCCc-CCcccccccccceeeeccCC
Q 017975 307 NFLKFPKLQNITQALHIKDCNSLPL-NLLHLANMEHLQLFSIWDSN 351 (363)
Q Consensus 307 ~l~~l~~l~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~c~ 351 (363)
.+..+.++..+|+.|+|++|..+.. -+..+..+++|+.|.+.+=+
T Consensus 142 ~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 142 CLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 3444444556668888888876433 35567777888877776533
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.90 E-value=0.33 Score=25.86 Aligned_cols=18 Identities=33% Similarity=0.626 Sum_probs=13.3
Q ss_pred CCCCEEEccCCCCCccch
Q 017975 232 VSLHHLDLSSTKVRGLPQ 249 (363)
Q Consensus 232 ~~L~~L~l~~~~l~~lP~ 249 (363)
.+|++|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777888887777775
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.79 E-value=1.6 Score=33.37 Aligned_cols=86 Identities=17% Similarity=0.441 Sum_probs=49.9
Q ss_pred ccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCC
Q 017975 158 IEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSL 234 (363)
Q Consensus 158 ~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L 234 (363)
+.....++.+.+..+ +..++. +..+++++.+.+.. .+..++...|..+.+|+.+++..+ +..+ +..+.+. +|
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l 105 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NL 105 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T-
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--ccEEchhhhcCC-Cc
Confidence 344567888888764 666654 67887899999976 666677777888999999999765 4444 3456665 88
Q ss_pred CEEEccCCCCCccch
Q 017975 235 HHLDLSSTKVRGLPQ 249 (363)
Q Consensus 235 ~~L~l~~~~l~~lP~ 249 (363)
+.+.+.. .+..++.
T Consensus 106 ~~i~~~~-~~~~i~~ 119 (129)
T PF13306_consen 106 KEINIPS-NITKIEE 119 (129)
T ss_dssp -EEE-TT-B-SS---
T ss_pred eEEEECC-CccEECC
Confidence 8888765 4555554
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=81.29 E-value=0.37 Score=44.50 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=42.4
Q ss_pred hhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCc-CCcccccccccceeeeccCCC
Q 017975 284 KEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPL-NLLHLANMEHLQLFSIWDSNL 352 (363)
Q Consensus 284 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~c~~ 352 (363)
.+.+.|+.|.++++......+...+.+...-...+..+.+++|+.++. .+..+...++|+.+++.+|..
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 356678888888776544433223333333333447788888876433 345567777888888887764
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.09 E-value=1.7 Score=23.23 Aligned_cols=17 Identities=41% Similarity=0.706 Sum_probs=11.4
Q ss_pred CCCCCEEEccCCCCCcc
Q 017975 231 LVSLHHLDLSSTKVRGL 247 (363)
Q Consensus 231 L~~L~~L~l~~~~l~~l 247 (363)
+.+|+.|++++|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35677777777776654
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.26 E-value=1.1 Score=37.40 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=25.6
Q ss_pred ccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-Cccc-cCCCCCCEEEccCC-CCC
Q 017975 186 LQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGI-SSLVSLHHLDLSST-KVR 245 (363)
Q Consensus 186 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i-~~L~~L~~L~l~~~-~l~ 245 (363)
++.++-+++.+...--..+.+++.++.|.+.+|+.+..- -+-+ +-.++|+.|++++| .|+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 344444544444333233455555555555555432210 0001 12345555555555 444
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=70.69 E-value=2.2 Score=21.92 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=8.6
Q ss_pred CCCCEEEccCCCCC
Q 017975 232 VSLHHLDLSSTKVR 245 (363)
Q Consensus 232 ~~L~~L~l~~~~l~ 245 (363)
++|++|+|++|.|.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56778888877654
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=66.51 E-value=1.5 Score=42.02 Aligned_cols=36 Identities=36% Similarity=0.339 Sum_probs=22.5
Q ss_pred CCCCCCEEEcccCCCccc--cCccccCCCCCCEEEccC
Q 017975 206 SLPSLRVLNLSVNHYLTE--LPVGISSLVSLHHLDLSS 241 (363)
Q Consensus 206 ~l~~L~~L~L~~~~~~~~--lp~~i~~L~~L~~L~l~~ 241 (363)
..+.|+.|.+.++..+.. +-......++|+.|++++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 456677777776655554 323555667777777766
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.79 E-value=7.2 Score=21.00 Aligned_cols=14 Identities=50% Similarity=0.612 Sum_probs=10.2
Q ss_pred CCCCEEEccCCCCC
Q 017975 232 VSLHHLDLSSTKVR 245 (363)
Q Consensus 232 ~~L~~L~l~~~~l~ 245 (363)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788888887765
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=59.31 E-value=7.4 Score=20.43 Aligned_cols=10 Identities=50% Similarity=0.690 Sum_probs=4.8
Q ss_pred CCCEEEccCC
Q 017975 233 SLHHLDLSST 242 (363)
Q Consensus 233 ~L~~L~l~~~ 242 (363)
+|++|++++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 4444555444
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=54.18 E-value=0.17 Score=48.56 Aligned_cols=185 Identities=21% Similarity=0.179 Sum_probs=99.6
Q ss_pred cceEEEeecccccccC------CCCCCCCccEEEeccCCccccch----HHhcCC-CCCCEEEcccCCCcc-----ccCc
Q 017975 163 GVKRISLMENEIQSLP------QIPTCPRLQTLLLEYNHIEEITE----SFFQSL-PSLRVLNLSVNHYLT-----ELPV 226 (363)
Q Consensus 163 ~l~~L~l~~~~~~~l~------~~~~l~~L~~L~l~~~~l~~~~~----~~~~~l-~~L~~L~L~~~~~~~-----~lp~ 226 (363)
.+..+++.+|.+..-. .+....+|..|++++|.+..... ..+... ..|++|++..| .++ .+.+
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAA 166 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHH
Confidence 4777888888776532 25667788889999987763211 112232 45777777777 333 3455
Q ss_pred cccCCCCCCEEEccCCCCCc-----cchhhhc----cc-hhccccCcCccCcCCCCCCCCCCcccchhhhcc-ccccceE
Q 017975 227 GISSLVSLHHLDLSSTKVRG-----LPQELKA----LV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHC-LEQLNLI 295 (363)
Q Consensus 227 ~i~~L~~L~~L~l~~~~l~~-----lP~~i~~----L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~-L~~L~l~ 295 (363)
.+....+++.++++.|.+.. ++..+.. .. ++.|.+..+.++..- . . .....+...+. +..|++.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~-c--~--~l~~~l~~~~~~~~el~l~ 241 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSS-C--A--LLDEVLASGESLLRELDLA 241 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHH-H--H--HHHHHHhccchhhHHHHHH
Confidence 66667788888888886642 3333332 22 666555555443110 0 0 01122333334 5556666
Q ss_pred EEEeccCcccccc-cCCCchhhhhheeeecccCCCCcC----CcccccccccceeeeccCCCCC
Q 017975 296 ALSLRGSRGVENF-LKFPKLQNITQALHIKDCNSLPLN----LLHLANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 296 ~~~~~~~~~~~~l-~~l~~l~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~c~~l~ 354 (363)
.|...+..- ..+ ..+......++.++++.|+..... ...+...+.++.|.+++|++..
T Consensus 242 ~n~l~d~g~-~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 242 SNKLGDVGV-EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hcCcchHHH-HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 666543311 111 111111133467777777643222 2335566678888888777653
No 89
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=49.70 E-value=8.6 Score=36.79 Aligned_cols=85 Identities=27% Similarity=0.298 Sum_probs=50.4
Q ss_pred cccccceEEEeecc--cccccC-----CCCCCCCccEEEeccCC-ccccchHHhc-CCCCCCEEEcccCCCccc--cCcc
Q 017975 159 EEWEGVKRISLMEN--EIQSLP-----QIPTCPRLQTLLLEYNH-IEEITESFFQ-SLPSLRVLNLSVNHYLTE--LPVG 227 (363)
Q Consensus 159 ~~~~~l~~L~l~~~--~~~~l~-----~~~~l~~L~~L~l~~~~-l~~~~~~~~~-~l~~L~~L~L~~~~~~~~--lp~~ 227 (363)
...+.++.|++.++ .....+ ....+++|+.|+++++. ++...-..+. .+++|+.|.+.+|..++. +-.-
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 34567778887752 111111 23455788888888876 5443322233 377888888877743332 2223
Q ss_pred ccCCCCCCEEEccCCC
Q 017975 228 ISSLVSLHHLDLSSTK 243 (363)
Q Consensus 228 i~~L~~L~~L~l~~~~ 243 (363)
...+++|++|++++|.
T Consensus 291 ~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCH 306 (482)
T ss_pred HHhcCcccEEeeecCc
Confidence 4457778999998873
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.90 E-value=19 Score=34.93 Aligned_cols=36 Identities=33% Similarity=0.482 Sum_probs=15.9
Q ss_pred CCCccEEEeccCCccccch--HHhcCCCCCCEEEcccC
Q 017975 183 CPRLQTLLLEYNHIEEITE--SFFQSLPSLRVLNLSVN 218 (363)
Q Consensus 183 l~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~~ 218 (363)
.+.+..+.+++|++..+.. +.-...++|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3444445555554433221 11233445555555555
No 91
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=28.80 E-value=70 Score=20.70 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=18.4
Q ss_pred CCcccChHHHHHHHHHhCCccCcCHHHHHHHHHHhhccc
Q 017975 77 EDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLE 115 (363)
Q Consensus 77 ~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~L~~rsli~ 115 (363)
.+-.++..-|-+.|.+.+++.+.+ ++.|++++=+.
T Consensus 4 ~~~~~d~~pL~~Yy~~h~~L~E~D----L~~L~~kS~ms 38 (56)
T PF11569_consen 4 SGKPVDIQPLEDYYLKHKQLQEED----LDELCDKSRMS 38 (56)
T ss_dssp -------HHHHHHHHHT----TTH----HHHHHHHTT--
T ss_pred CCCCcchHHHHHHHHHcCCccHhh----HHHHHHHHCCC
Confidence 344555666889999999998876 88888886543
No 92
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=24.09 E-value=1.6e+02 Score=26.27 Aligned_cols=63 Identities=21% Similarity=0.045 Sum_probs=37.7
Q ss_pred HHHHHHHhhcCCCCChhhhHHHh-HhcCCCCCcccChHHHHHHHHHhCCccCcCHHHHHH-HHHHhhcccC
Q 017975 48 KVLSRLKFSYDSLPNDELRSCLL-YCCLFPEDSEIRKTDLIVYWESEGLLDSIGGWDVLG-ALVRACLLEE 116 (363)
Q Consensus 48 ~i~~~L~~sy~~L~~~~lk~cfl-~~s~Fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~-~L~~rsli~~ 116 (363)
.+...+..+|.++++ +.+..+. .++.+..+ .++.+++... .|--. ......++ .|+++++|..
T Consensus 224 ~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~---lg~~~-~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 224 KALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAA---LGEDA-DTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred HHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHH---hCCCc-chHHHhhhHHHHHcCCccc
Confidence 444456778889988 6666555 55666543 4554443322 12211 12667678 6999999975
No 93
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=23.37 E-value=39 Score=30.79 Aligned_cols=63 Identities=19% Similarity=0.082 Sum_probs=38.2
Q ss_pred HHHHHHHhhcCCCCChhhhHHHh-HhcCCCCCcccChHHHHHHHHHhCCccCcCHHHHHH-HHHHhhcccC
Q 017975 48 KVLSRLKFSYDSLPNDELRSCLL-YCCLFPEDSEIRKTDLIVYWESEGLLDSIGGWDVLG-ALVRACLLEE 116 (363)
Q Consensus 48 ~i~~~L~~sy~~L~~~~lk~cfl-~~s~Fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~-~L~~rsli~~ 116 (363)
.....+...|..|+. ..+.-+. ....|+.+ .+..+.+-... |--.. ..++.++ .|++++|++.
T Consensus 245 ~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g~~~~-~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 245 KALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL---GEERD-TIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred HHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH---CCCcc-hHHHHhhHHHHHcCCccc
Confidence 455666778889988 5666664 66677665 45555543221 21111 1555667 8888888864
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.46 E-value=57 Score=38.29 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=17.3
Q ss_pred eccCCccccchHHhcCCCCCCEEEcccC
Q 017975 191 LEYNHIEEITESFFQSLPSLRVLNLSVN 218 (363)
Q Consensus 191 l~~~~l~~~~~~~~~~l~~L~~L~L~~~ 218 (363)
|++|+|+.+++..|..+.+|+.|+|++|
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgN 29 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGN 29 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCC
Confidence 5556666666666666666666666665
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.16 E-value=28 Score=33.80 Aligned_cols=13 Identities=15% Similarity=0.092 Sum_probs=6.4
Q ss_pred cceeeeccCCCCC
Q 017975 342 LQLFSIWDSNLED 354 (363)
Q Consensus 342 L~~L~l~~c~~l~ 354 (363)
|++|-+.||+..+
T Consensus 272 Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 272 LEELVLEGNPLCT 284 (585)
T ss_pred HHHeeecCCcccc
Confidence 4455555555443
No 96
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=20.41 E-value=64 Score=21.37 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.9
Q ss_pred CccccCCchhHHHHHHHHhcCCCC
Q 017975 1 MASQCHGLPLALETVGQAMAGKEF 24 (363)
Q Consensus 1 Iv~~c~GlPLai~~ig~~L~~~~~ 24 (363)
|++.|+|++=-+-++-++|+.|.+
T Consensus 10 iaq~~~~I~~~Ld~fF~FL~RkTD 33 (62)
T PF14050_consen 10 IAQQCGGIEDFLDTFFSFLRRKTD 33 (62)
T ss_pred HHHHcCCHHHHHHHHHHHHhccCc
Confidence 578899999999999999999643
No 97
>PF15385 SARG: Specifically androgen-regulated gene protein
Probab=20.26 E-value=51 Score=31.86 Aligned_cols=16 Identities=44% Similarity=0.748 Sum_probs=14.7
Q ss_pred hcCCCCChhhhHHHhHh
Q 017975 56 SYDSLPNDELRSCLLYC 72 (363)
Q Consensus 56 sy~~L~~~~lk~cfl~~ 72 (363)
||++|.. +.|.|++++
T Consensus 7 Sl~~LS~-EEkecLlFl 22 (497)
T PF15385_consen 7 SLDYLSA-EEKECLLFL 22 (497)
T ss_pred cccccch-hhHHHHHHH
Confidence 8999999 899999985
Done!