Query 017975
Match_columns 363
No_of_seqs 413 out of 2435
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 07:55:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 4.9E-23 1.7E-27 187.3 15.2 204 142-361 83-298 (328)
2 2a5y_B CED-4; apoptosis; HET: 99.8 4.7E-22 1.6E-26 193.0 2.2 126 1-138 322-471 (549)
3 4fcg_A Uncharacterized protein 99.8 1.3E-20 4.4E-25 171.3 11.0 181 162-360 81-273 (328)
4 1ozn_A Reticulon 4 receptor; N 99.8 2.2E-19 7.5E-24 159.9 13.2 204 143-352 14-237 (285)
5 3rfs_A Internalin B, repeat mo 99.8 3.1E-19 1E-23 157.9 13.6 194 144-359 45-241 (272)
6 2o6q_A Variable lymphocyte rec 99.8 6.1E-19 2.1E-23 155.8 15.0 195 143-353 19-218 (270)
7 3rfs_A Internalin B, repeat mo 99.8 1.6E-19 5.6E-24 159.6 10.8 189 152-357 31-222 (272)
8 1ogq_A PGIP-2, polygalacturona 99.8 2.5E-19 8.6E-24 161.7 11.5 198 156-359 70-287 (313)
9 2z66_A Variable lymphocyte rec 99.8 4.5E-19 1.5E-23 159.5 11.6 208 144-359 11-242 (306)
10 1ozn_A Reticulon 4 receptor; N 99.8 6.7E-19 2.3E-23 156.7 11.2 209 144-359 36-267 (285)
11 1h6u_A Internalin H; cell adhe 99.8 1.3E-18 4.3E-23 156.7 13.2 187 143-354 44-231 (308)
12 1p9a_G Platelet glycoprotein I 99.8 2.9E-18 9.8E-23 153.0 13.1 192 143-353 13-208 (290)
13 3zyi_A Leucine-rich repeat-con 99.8 3.2E-18 1.1E-22 162.4 14.1 204 144-354 58-280 (452)
14 3zyj_A Leucine-rich repeat-con 99.8 2E-18 7E-23 163.2 12.5 179 159-352 109-291 (440)
15 1h6u_A Internalin H; cell adhe 99.8 3.1E-18 1E-22 154.2 12.7 180 153-357 32-212 (308)
16 3zyj_A Leucine-rich repeat-con 99.8 4.7E-18 1.6E-22 160.7 14.4 209 144-359 47-274 (440)
17 2z62_A TOLL-like receptor 4, v 99.8 4.3E-18 1.5E-22 150.8 13.2 186 163-355 29-239 (276)
18 2z80_A TOLL-like receptor 2, v 99.8 1.4E-18 4.6E-23 159.6 9.6 200 142-357 33-239 (353)
19 1ogq_A PGIP-2, polygalacturona 99.8 2E-18 6.7E-23 155.9 10.0 192 162-360 50-264 (313)
20 2xwt_C Thyrotropin receptor; s 99.8 3.1E-18 1.1E-22 148.4 10.9 187 152-357 23-222 (239)
21 3rgz_A Protein brassinosteroid 99.8 2.5E-18 8.5E-23 173.6 11.8 197 158-359 438-723 (768)
22 3m19_A Variable lymphocyte rec 99.7 9.3E-18 3.2E-22 146.5 13.3 168 144-327 18-190 (251)
23 1p9a_G Platelet glycoprotein I 99.7 6.8E-18 2.3E-22 150.6 12.6 180 158-354 6-186 (290)
24 1h6t_A Internalin B; cell adhe 99.7 4.3E-18 1.5E-22 152.0 11.3 177 153-354 37-214 (291)
25 3zyi_A Leucine-rich repeat-con 99.7 4.9E-18 1.7E-22 161.1 12.2 189 158-352 95-302 (452)
26 1xku_A Decorin; proteoglycan, 99.7 1.9E-17 6.3E-22 150.5 15.4 206 145-358 36-281 (330)
27 2o6q_A Variable lymphocyte rec 99.7 1.2E-17 4.2E-22 147.4 13.4 180 163-358 17-199 (270)
28 2ft3_A Biglycan; proteoglycan, 99.7 4.3E-17 1.5E-21 148.3 17.1 205 144-358 37-282 (332)
29 3o6n_A APL1; leucine-rich repe 99.7 8.2E-18 2.8E-22 156.5 12.5 110 159-269 66-180 (390)
30 3oja_B Anopheles plasmodium-re 99.7 7.1E-18 2.4E-22 165.5 12.6 187 160-353 73-314 (597)
31 2z62_A TOLL-like receptor 4, v 99.7 1.1E-17 3.8E-22 148.1 12.2 188 167-358 12-218 (276)
32 2id5_A Lingo-1, leucine rich r 99.7 1.2E-17 4.1E-22 159.5 13.1 204 143-353 14-237 (477)
33 4eco_A Uncharacterized protein 99.7 2.6E-18 8.9E-23 169.8 7.6 172 180-359 202-421 (636)
34 3rgz_A Protein brassinosteroid 99.7 1.6E-17 5.5E-22 167.6 13.2 134 160-302 416-553 (768)
35 2z66_A Variable lymphocyte rec 99.7 4.5E-18 1.6E-22 152.9 7.8 180 161-354 77-262 (306)
36 3vq2_A TLR4, TOLL-like recepto 99.7 1.2E-17 4.1E-22 164.2 11.2 200 142-353 13-217 (606)
37 4ecn_A Leucine-rich repeat pro 99.7 2.2E-17 7.6E-22 167.0 13.2 209 142-359 550-824 (876)
38 4fmz_A Internalin; leucine ric 99.7 8.2E-17 2.8E-21 147.2 15.5 124 143-270 69-193 (347)
39 3vq2_A TLR4, TOLL-like recepto 99.7 2.4E-17 8.3E-22 162.0 12.6 203 145-353 290-534 (606)
40 1m9s_A Internalin B; cell inva 99.7 1.4E-17 4.9E-22 162.7 10.2 178 153-355 34-212 (605)
41 3v47_A TOLL-like receptor 5B a 99.7 3.3E-17 1.1E-21 155.4 11.5 37 182-218 77-113 (455)
42 4fmz_A Internalin; leucine ric 99.7 1.2E-16 4.2E-21 146.0 14.9 199 143-354 47-257 (347)
43 2z7x_B TOLL-like receptor 1, v 99.7 1.1E-16 3.6E-21 154.5 15.2 121 143-267 3-128 (520)
44 2id5_A Lingo-1, leucine rich r 99.7 6.3E-17 2.1E-21 154.5 13.2 197 157-358 75-314 (477)
45 3o6n_A APL1; leucine-rich repe 99.7 3.5E-17 1.2E-21 152.2 11.1 112 159-271 42-158 (390)
46 3sfz_A APAF-1, apoptotic pepti 99.7 8.2E-18 2.8E-22 178.2 7.4 131 1-138 313-452 (1249)
47 4eco_A Uncharacterized protein 99.7 2.4E-17 8.3E-22 162.8 10.2 209 143-359 308-584 (636)
48 3v47_A TOLL-like receptor 5B a 99.7 8.5E-17 2.9E-21 152.6 13.5 127 142-270 12-145 (455)
49 2xwt_C Thyrotropin receptor; s 99.7 2.7E-17 9.2E-22 142.5 9.1 190 143-352 34-238 (239)
50 3t6q_A CD180 antigen; protein- 99.7 8.2E-17 2.8E-21 158.2 13.7 212 144-360 258-496 (606)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2.1E-16 7.3E-21 153.9 16.3 123 142-268 33-160 (562)
52 2z81_A CD282 antigen, TOLL-lik 99.7 4E-17 1.4E-21 158.5 9.8 194 145-354 10-210 (549)
53 3j0a_A TOLL-like receptor 5; m 99.7 1.7E-16 5.8E-21 161.8 14.8 204 142-358 6-222 (844)
54 1o6v_A Internalin A; bacterial 99.7 2.2E-16 7.4E-21 150.3 14.6 126 160-301 197-323 (466)
55 3m19_A Variable lymphocyte rec 99.7 1.8E-16 6E-21 138.4 12.6 178 162-355 14-194 (251)
56 2z80_A TOLL-like receptor 2, v 99.7 1.3E-16 4.5E-21 146.3 12.2 179 162-354 31-212 (353)
57 3oja_B Anopheles plasmodium-re 99.7 7.2E-17 2.5E-21 158.4 10.6 111 160-271 49-164 (597)
58 1ziw_A TOLL-like receptor 3; i 99.7 1.5E-16 5.2E-21 158.4 12.8 212 144-358 8-290 (680)
59 4g8a_A TOLL-like receptor 4; l 99.7 1.8E-16 6.1E-21 156.2 13.0 126 143-269 55-188 (635)
60 4g8a_A TOLL-like receptor 4; l 99.7 1.3E-16 4.3E-21 157.3 11.6 173 144-327 35-212 (635)
61 3bz5_A Internalin-J, INLJ; leu 99.7 7.2E-16 2.5E-20 146.2 16.3 112 144-264 46-158 (457)
62 2o6s_A Variable lymphocyte rec 99.7 2.4E-16 8.1E-21 133.5 11.5 184 144-354 11-199 (208)
63 1o6v_A Internalin A; bacterial 99.7 3.2E-16 1.1E-20 149.2 13.6 188 143-355 202-390 (466)
64 2z63_A TOLL-like receptor 4, v 99.7 1.3E-16 4.6E-21 155.4 11.0 197 143-351 10-211 (570)
65 3bz5_A Internalin-J, INLJ; leu 99.7 2.6E-16 9E-21 149.2 12.4 187 155-356 35-249 (457)
66 2o6s_A Variable lymphocyte rec 99.7 1.2E-16 4.2E-21 135.2 9.2 174 165-361 10-186 (208)
67 2ft3_A Biglycan; proteoglycan, 99.7 4.4E-16 1.5E-20 141.6 13.3 186 162-358 33-258 (332)
68 3t6q_A CD180 antigen; protein- 99.7 3.9E-16 1.3E-20 153.4 13.6 209 144-357 109-417 (606)
69 4ecn_A Leucine-rich repeat pro 99.7 8.6E-17 3E-21 162.7 9.0 193 157-353 443-686 (876)
70 1vt4_I APAF-1 related killer D 99.7 4.1E-17 1.4E-21 163.1 6.3 112 4-132 322-437 (1221)
71 2z63_A TOLL-like receptor 4, v 99.7 4E-16 1.4E-20 152.0 12.4 191 161-357 324-535 (570)
72 2z7x_B TOLL-like receptor 1, v 99.7 3.5E-16 1.2E-20 150.9 11.7 125 165-301 3-129 (520)
73 1h6t_A Internalin B; cell adhe 99.7 5.1E-16 1.7E-20 138.5 11.6 163 143-328 49-212 (291)
74 1xku_A Decorin; proteoglycan, 99.6 3E-15 1E-19 135.9 16.1 201 144-354 80-307 (330)
75 1wwl_A Monocyte differentiatio 99.6 2.1E-16 7E-21 142.5 8.3 178 159-354 118-310 (312)
76 4ezg_A Putative uncharacterize 99.6 6.9E-16 2.4E-20 129.5 10.6 152 158-353 40-194 (197)
77 1xeu_A Internalin C; cellular 99.6 3.8E-17 1.3E-21 143.6 2.9 156 149-328 28-184 (263)
78 3j0a_A TOLL-like receptor 5; m 99.6 6.6E-16 2.2E-20 157.5 11.9 181 165-359 7-193 (844)
79 1wwl_A Monocyte differentiatio 99.6 2.9E-16 9.9E-21 141.5 8.2 182 160-358 93-291 (312)
80 2z81_A CD282 antigen, TOLL-lik 99.6 7.4E-16 2.5E-20 149.6 11.4 174 166-353 9-185 (549)
81 1m9s_A Internalin B; cell inva 99.6 6.8E-16 2.3E-20 150.8 11.1 163 144-329 47-210 (605)
82 1ziw_A TOLL-like receptor 3; i 99.6 1.3E-15 4.6E-20 151.6 13.4 205 144-353 53-309 (680)
83 3oja_A Leucine-rich immune mol 99.6 1.9E-16 6.6E-21 151.4 6.7 196 143-353 37-250 (487)
84 1xeu_A Internalin C; cellular 99.6 5.3E-16 1.8E-20 136.3 8.9 143 143-302 44-187 (263)
85 3g06_A SSPH2 (leucine-rich rep 99.6 1.9E-15 6.6E-20 147.9 13.0 199 144-358 65-302 (622)
86 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.4E-15 4.9E-20 148.1 12.1 148 162-327 31-180 (562)
87 3e6j_A Variable lymphocyte rec 99.6 1.5E-15 5.2E-20 130.6 10.8 147 145-302 24-174 (229)
88 3cvr_A Invasion plasmid antige 99.6 1.8E-15 6.1E-20 146.4 11.8 186 143-359 62-249 (571)
89 4ezg_A Putative uncharacterize 99.6 2.1E-15 7.2E-20 126.5 10.8 146 143-300 47-194 (197)
90 3oja_A Leucine-rich immune mol 99.6 7.1E-16 2.4E-20 147.4 7.9 178 160-354 32-228 (487)
91 4glp_A Monocyte differentiatio 99.6 1.1E-15 3.8E-20 137.6 8.6 192 143-354 94-308 (310)
92 2v9t_B SLIT homolog 2 protein 99.6 2.7E-15 9.2E-20 128.2 10.6 150 143-303 14-168 (220)
93 3o53_A Protein LRIM1, AGAP0063 99.6 1.2E-15 4.2E-20 137.7 8.8 192 143-353 37-250 (317)
94 2v9t_B SLIT homolog 2 protein 99.6 3.2E-15 1.1E-19 127.7 9.5 148 165-328 14-164 (220)
95 3o53_A Protein LRIM1, AGAP0063 99.6 9.7E-16 3.3E-20 138.4 6.5 181 160-358 32-231 (317)
96 2v70_A SLIT-2, SLIT homolog 2 99.6 5.1E-15 1.7E-19 126.4 10.3 150 144-304 15-170 (220)
97 3e6j_A Variable lymphocyte rec 99.6 5.8E-15 2E-19 126.9 10.2 148 164-328 21-171 (229)
98 2xot_A Amphoterin-induced prot 99.6 2.6E-15 8.8E-20 138.1 8.1 170 144-327 22-200 (361)
99 3g06_A SSPH2 (leucine-rich rep 99.6 1.5E-14 5.1E-19 141.6 13.9 144 142-301 42-195 (622)
100 4glp_A Monocyte differentiatio 99.6 4.4E-15 1.5E-19 133.6 9.1 183 161-355 90-287 (310)
101 1z6t_A APAF-1, apoptotic prote 99.6 1.6E-15 5.3E-20 148.7 6.3 128 1-135 313-449 (591)
102 2v70_A SLIT-2, SLIT homolog 2 99.6 6.4E-15 2.2E-19 125.8 8.8 147 165-327 14-164 (220)
103 1jl5_A Outer protein YOPM; leu 99.6 3.1E-14 1.1E-18 134.8 13.9 100 162-270 111-211 (454)
104 1jl5_A Outer protein YOPM; leu 99.6 2.1E-14 7.1E-19 136.0 12.3 39 209-249 216-254 (454)
105 2ast_B S-phase kinase-associat 99.5 1E-15 3.5E-20 139.2 2.9 181 157-350 88-282 (336)
106 2xot_A Amphoterin-induced prot 99.5 1.3E-14 4.3E-19 133.5 9.7 124 166-300 22-149 (361)
107 4ay9_X Follicle-stimulating ho 99.5 2.9E-14 9.9E-19 130.5 10.4 126 144-271 13-146 (350)
108 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-14 5.8E-19 118.7 7.7 137 156-301 13-154 (176)
109 2ast_B S-phase kinase-associat 99.5 2.9E-15 9.9E-20 136.2 3.1 178 162-351 70-258 (336)
110 2ell_A Acidic leucine-rich nuc 99.5 2E-14 6.7E-19 117.3 6.3 130 162-300 24-160 (168)
111 2ell_A Acidic leucine-rich nuc 99.5 2.3E-13 7.8E-18 110.9 12.0 129 142-271 26-164 (168)
112 2je0_A Acidic leucine-rich nuc 99.5 5.4E-14 1.8E-18 112.3 6.9 125 162-295 17-148 (149)
113 3cvr_A Invasion plasmid antige 99.5 3.3E-13 1.1E-17 130.6 12.4 158 162-358 59-224 (571)
114 1dce_A Protein (RAB geranylger 99.5 1.9E-16 6.3E-21 153.8 -10.4 107 233-357 442-550 (567)
115 4b8c_D Glucose-repressible alc 99.5 1.5E-14 5.2E-19 144.6 2.7 149 180-350 220-369 (727)
116 4b8c_D Glucose-repressible alc 99.4 2E-14 6.8E-19 143.7 3.0 174 158-353 220-404 (727)
117 4ay9_X Follicle-stimulating ho 99.4 3.2E-13 1.1E-17 123.6 10.0 185 165-356 12-218 (350)
118 1w8a_A SLIT protein; signaling 99.4 1.8E-13 6.1E-18 114.2 7.5 129 165-304 11-143 (192)
119 1a9n_A U2A', U2A'; complex (nu 99.4 3.3E-13 1.1E-17 110.9 8.5 124 143-267 22-153 (176)
120 1dce_A Protein (RAB geranylger 99.4 2.8E-13 9.4E-18 131.6 9.3 107 185-303 442-549 (567)
121 2o6r_A Variable lymphocyte rec 99.4 5.4E-13 1.8E-17 109.7 8.5 129 164-303 9-140 (177)
122 2wfh_A SLIT homolog 2 protein 99.4 7.4E-13 2.5E-17 110.5 9.0 127 165-303 13-142 (193)
123 2je0_A Acidic leucine-rich nuc 99.4 1.3E-12 4.6E-17 104.1 9.9 120 142-262 19-148 (149)
124 2ca6_A RAN GTPase-activating p 99.4 1.2E-14 4.2E-19 134.8 -2.5 188 160-357 92-320 (386)
125 1w8a_A SLIT protein; signaling 99.4 1.7E-12 5.7E-17 108.3 10.2 123 143-267 11-139 (192)
126 2wfh_A SLIT homolog 2 protein 99.4 2.9E-12 9.9E-17 106.9 10.7 123 143-267 13-139 (193)
127 2o6r_A Variable lymphocyte rec 99.4 5.1E-12 1.8E-16 103.8 11.4 123 144-268 11-138 (177)
128 1ds9_A Outer arm dynein; leuci 99.4 1.1E-14 3.8E-19 122.2 -4.9 139 195-353 36-185 (198)
129 2ca6_A RAN GTPase-activating p 99.3 1.2E-13 4.2E-18 128.0 1.2 185 160-354 58-288 (386)
130 3goz_A Leucine-rich repeat-con 99.3 2.4E-13 8.2E-18 125.0 1.5 187 162-355 80-299 (362)
131 2r9u_A Variable lymphocyte rec 99.3 1.2E-11 4.2E-16 101.3 9.7 104 165-270 15-121 (174)
132 2r9u_A Variable lymphocyte rec 99.3 2.2E-11 7.7E-16 99.7 10.2 111 143-255 15-128 (174)
133 3g39_A Variable lymphocyte rec 99.3 1.8E-11 6.3E-16 99.8 9.2 102 164-267 11-115 (170)
134 3goz_A Leucine-rich repeat-con 99.2 7.6E-13 2.6E-17 121.6 0.4 189 162-357 22-242 (362)
135 3g39_A Variable lymphocyte rec 99.2 8.5E-11 2.9E-15 95.8 10.2 110 144-255 13-125 (170)
136 1z7x_W Ribonuclease inhibitor; 99.2 1E-12 3.4E-17 124.6 -2.6 193 161-355 169-413 (461)
137 1z7x_W Ribonuclease inhibitor; 99.2 9.8E-13 3.3E-17 124.7 -3.7 132 163-300 143-297 (461)
138 1ds9_A Outer arm dynein; leuci 99.2 3.6E-13 1.2E-17 112.9 -6.0 111 180-302 44-155 (198)
139 2ifg_A High affinity nerve gro 99.1 3E-10 1E-14 103.5 9.2 101 145-246 13-117 (347)
140 2ifg_A High affinity nerve gro 99.0 2.1E-09 7.1E-14 97.9 9.8 102 166-268 12-117 (347)
141 3sb4_A Hypothetical leucine ri 98.9 9.7E-10 3.3E-14 99.4 7.1 177 161-355 48-312 (329)
142 3ogk_B Coronatine-insensitive 98.9 2.5E-10 8.5E-15 111.6 0.5 16 338-353 376-391 (592)
143 3ogk_B Coronatine-insensitive 98.7 4.4E-09 1.5E-13 102.7 3.1 104 161-265 191-304 (592)
144 2p1m_B Transport inhibitor res 98.7 7.4E-10 2.5E-14 108.2 -2.9 81 161-241 155-244 (594)
145 3sb4_A Hypothetical leucine ri 98.7 2.3E-08 7.9E-13 90.3 6.7 182 160-349 23-283 (329)
146 2p1m_B Transport inhibitor res 98.6 3E-09 1E-13 103.9 -0.8 66 280-350 282-348 (594)
147 3un9_A NLR family member X1; l 98.5 1.4E-09 4.9E-14 99.9 -7.0 157 162-328 72-251 (372)
148 3un9_A NLR family member X1; l 98.3 3E-08 1E-12 91.0 -2.7 38 207-245 154-196 (372)
149 4fdw_A Leucine rich hypothetic 98.2 5.2E-06 1.8E-10 76.9 10.2 178 163-354 158-359 (401)
150 4fdw_A Leucine rich hypothetic 98.1 1.1E-05 3.8E-10 74.7 9.4 178 162-350 135-333 (401)
151 2ra8_A Uncharacterized protein 98.0 5.8E-06 2E-10 75.3 5.8 136 159-300 169-320 (362)
152 2ra8_A Uncharacterized protein 98.0 2.9E-06 9.9E-11 77.3 3.4 144 202-354 166-321 (362)
153 3e4g_A ATP synthase subunit S, 97.8 2.6E-05 8.9E-10 62.9 5.1 85 162-246 61-154 (176)
154 3rw6_A Nuclear RNA export fact 97.7 2.1E-05 7.3E-10 68.2 4.4 80 167-248 148-237 (267)
155 3e4g_A ATP synthase subunit S, 97.7 6E-06 2E-10 66.7 0.8 35 208-243 61-96 (176)
156 1io0_A Tropomodulin; LRR prote 97.7 1.2E-05 4.1E-10 65.9 2.5 84 162-246 36-137 (185)
157 3rw6_A Nuclear RNA export fact 97.7 3.9E-05 1.3E-09 66.5 5.5 110 180-294 137-258 (267)
158 1io0_A Tropomodulin; LRR prote 97.5 2.8E-05 9.6E-10 63.7 2.1 87 180-267 32-136 (185)
159 3rfe_A Platelet glycoprotein I 96.0 0.0086 2.9E-07 45.6 5.0 52 166-218 12-65 (130)
160 3rfe_A Platelet glycoprotein I 95.3 0.021 7.1E-07 43.4 4.9 54 188-245 12-68 (130)
161 4h09_A Hypothetical leucine ri 93.1 0.22 7.6E-06 45.0 7.6 79 180-261 236-317 (379)
162 4fs7_A Uncharacterized protein 92.0 0.33 1.1E-05 44.2 7.2 16 334-349 360-375 (394)
163 4gt6_A Cell surface protein; l 91.7 0.44 1.5E-05 43.3 7.7 104 180-297 261-367 (394)
164 4gt6_A Cell surface protein; l 91.4 0.45 1.6E-05 43.2 7.4 101 159-264 262-367 (394)
165 2fna_A Conserved hypothetical 90.7 0.38 1.3E-05 42.7 6.2 115 1-130 235-355 (357)
166 4fs7_A Uncharacterized protein 90.5 0.38 1.3E-05 43.7 6.0 96 161-261 275-373 (394)
167 4h09_A Hypothetical leucine ri 89.8 0.5 1.7E-05 42.6 6.2 99 159-261 237-340 (379)
168 2qen_A Walker-type ATPase; unk 87.5 0.61 2.1E-05 41.3 5.0 114 2-130 232-347 (350)
169 1pgv_A TMD-1, tropomodulin TMD 85.8 0.64 2.2E-05 37.8 3.7 80 162-242 41-136 (197)
170 1pgv_A TMD-1, tropomodulin TMD 85.3 0.68 2.3E-05 37.7 3.7 65 181-246 38-112 (197)
171 1w5s_A Origin recognition comp 67.0 2.9 9.8E-05 37.9 2.7 76 51-127 297-387 (412)
172 1hqc_A RUVB; extended AAA-ATPa 60.4 6.3 0.00022 34.2 3.6 27 90-116 289-324 (324)
173 2vda_B Maltoporin; sugar trans 54.0 9.3 0.00032 19.0 1.9 19 3-21 6-24 (28)
174 2lz0_A Uncharacterized protein 32.3 44 0.0015 23.4 3.6 38 180-218 16-53 (100)
175 2xvc_A ESCRT-III, SSO0910; cel 24.8 6.6 0.00023 24.4 -1.7 29 73-116 29-57 (59)
176 1utg_A Uteroglobin; steroid bi 24.5 1.1E+02 0.0036 19.8 4.1 27 6-34 1-27 (70)
177 2kz2_A Calmodulin, CAM; TR2C, 21.7 1.8E+02 0.0063 19.3 8.2 66 6-72 9-74 (94)
178 1ccd_A Clara cell 17 KD protei 21.1 1.5E+02 0.0051 19.6 4.3 27 5-33 2-28 (77)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=4.9e-23 Score=187.27 Aligned_cols=204 Identities=24% Similarity=0.283 Sum_probs=179.2
Q ss_pred ceeEEecCCCCCCCcc-ccccccceEEEeecccccccCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975 142 EKFLVRAGVGLTDAPK-IEEWEGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH 219 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~ 219 (363)
-..+...+..+..+|. +..++++++|++++|.++.+|. +..+++|++|++++|.++.+|.. ++++++|++|++++|.
T Consensus 83 l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 83 RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACP 161 (328)
T ss_dssp CCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEEET
T ss_pred eeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCCCC
Confidence 3456666777776664 6778999999999999998885 78999999999999999988776 8999999999999988
Q ss_pred CccccCccccC---------CCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccc
Q 017975 220 YLTELPVGISS---------LVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCL 289 (363)
Q Consensus 220 ~~~~lp~~i~~---------L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L 289 (363)
..+.+|..++. +++|++|++++|.++.+|..++.+. |+.|++++|.+..+| ..+..+++|
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~----------~~l~~l~~L 231 (328)
T 4fcg_A 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG----------PAIHHLPKL 231 (328)
T ss_dssp TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCC----------GGGGGCTTC
T ss_pred CccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCc----------hhhccCCCC
Confidence 88999988765 9999999999999999999999999 999999999998877 578899999
Q ss_pred cccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccccC
Q 017975 290 EQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAG 361 (363)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~ 361 (363)
+.|++.+|.+.+..+ ..+..++++ ++|++++|+.....+..+.++++|+.|++++|+.++.+|+..+
T Consensus 232 ~~L~Ls~n~~~~~~p-~~~~~l~~L----~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 232 EELDLRGCTALRNYP-PIFGGRAPL----KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CEEECTTCTTCCBCC-CCTTCCCCC----CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred CEEECcCCcchhhhH-HHhcCCCCC----CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 999999988877665 567777777 9999999988777777899999999999999999999998653
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.83 E-value=4.7e-22 Score=192.97 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=98.3
Q ss_pred CccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccccccccchHHHHHHHHhhcCCCCChhhhHHHh----------
Q 017975 1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLL---------- 70 (363)
Q Consensus 1 Iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~lk~cfl---------- 70 (363)
||++|+|+||||+++|+.|+.+ + |+.+ +.+.+..+... .++|..++++||++||+ ++|.||+
T Consensus 322 I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~ 393 (549)
T 2a5y_B 322 TIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSAL 393 (549)
T ss_dssp HHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHT
T ss_pred HHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhhccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHh
Confidence 5789999999999999999874 3 5443 34444332211 12688999999999999 9999999
Q ss_pred -HhcCCCCCcccChHHHHHHHHHh--CCccCcC-------HHHHHHHHHHhhcccC----CCCceeechhHHHHHHHHhh
Q 017975 71 -YCCLFPEDSEIRKTDLIVYWESE--GLLDSIG-------GWDVLGALVRACLLEE----GGDHVKMHDMIRDMALWIAN 136 (363)
Q Consensus 71 -~~s~Fp~~~~~~~~~li~~w~a~--g~~~~~~-------~~~~~~~L~~rsli~~----~~~~~~mhdl~~~~~~~i~~ 136 (363)
|||+||+++.|+ +++|+|+ ||+...+ +..|+++|+++||++. ....|+|||++|++|++++.
T Consensus 394 ~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~ 469 (549)
T 2a5y_B 394 AFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVD 469 (549)
T ss_dssp TGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSC
T ss_pred hheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHH
Confidence 999999999998 8999999 9997542 3349999999999997 24579999999999998876
Q ss_pred hh
Q 017975 137 EI 138 (363)
Q Consensus 137 ~~ 138 (363)
++
T Consensus 470 ~~ 471 (549)
T 2a5y_B 470 AQ 471 (549)
T ss_dssp TH
T ss_pred HH
Confidence 54
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.3e-20 Score=171.31 Aligned_cols=181 Identities=20% Similarity=0.265 Sum_probs=159.6
Q ss_pred ccceEEEeecccccccCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEcc
Q 017975 162 EGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLS 240 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 240 (363)
.+++.|++++|.++.+|. +..+++|++|++++|.+..+|.. ++++++|++|++++| .++.+|..++.+++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence 689999999999999885 77899999999999999988766 899999999999999 677999999999999999999
Q ss_pred CC-CCCccchhhhc---------cc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCccccccc
Q 017975 241 ST-KVRGLPQELKA---------LV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFL 309 (363)
Q Consensus 241 ~~-~l~~lP~~i~~---------L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~ 309 (363)
+| .+..+|..+.. +. |+.|+++.|.++.+| ..+..+++|+.|++.+|.+.+.. ..+.
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp----------~~l~~l~~L~~L~L~~N~l~~l~--~~l~ 226 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP----------ASIANLQNLKSLKIRNSPLSALG--PAIH 226 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC----------GGGGGCTTCCEEEEESSCCCCCC--GGGG
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch----------HhhcCCCCCCEEEccCCCCCcCc--hhhc
Confidence 97 45568988765 77 999999999998877 67899999999999999988543 3577
Q ss_pred CCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccccc
Q 017975 310 KFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCA 360 (363)
Q Consensus 310 ~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~ 360 (363)
.++++ ++|++++|+.....+..+..+++|+.|++++|...+.+|...
T Consensus 227 ~l~~L----~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~ 273 (328)
T 4fcg_A 227 HLPKL----EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273 (328)
T ss_dssp GCTTC----CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred cCCCC----CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh
Confidence 77776 999999998877777789999999999999999999998754
No 4
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=2.2e-19 Score=159.88 Aligned_cols=204 Identities=24% Similarity=0.286 Sum_probs=131.0
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 220 (363)
..+.+.+..++.+|. ...+++++|++++|.++.++. +..+++|++|++++|.++.+.+..+.++++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 345566666666664 234688888888888888763 67888888888888888888666688888888888888854
Q ss_pred cccc-CccccCCCCCCEEEccCCCCCcc-chhhhccc-hhccccCcCccCcCCC---CCCCCC-----------Ccc-cc
Q 017975 221 LTEL-PVGISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEE---GNVLSD-----------DAE-SL 282 (363)
Q Consensus 221 ~~~l-p~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l-----------~~~-~~ 282 (363)
++.+ |..+..+++|++|++++|.+..+ |..+..++ |+.|+++.|.++.+|. .++.++ ..+ ..
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 6666 66788888888888888888877 45677777 8888888888877764 111111 111 12
Q ss_pred hhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCC
Q 017975 283 MKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNL 352 (363)
Q Consensus 283 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 352 (363)
+..+++|+.|++.+|.+.+..+ ..+..++++ +.|++++|......+..+..+++|+.|++++|+.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRL----MTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECT-TTTTTCTTC----CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred hcCccccCEEECCCCcccccCH-hHccCcccc----cEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 4445555555555554443322 333444443 5555555543322223355555555555555554
No 5
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=3.1e-19 Score=157.90 Aligned_cols=194 Identities=20% Similarity=0.318 Sum_probs=111.2
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccc
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 223 (363)
.+...+..+..++.+..++++++|++++|.++.++.+..+++|++|++++|.++.+++..+.++++|++|++++| .++.
T Consensus 45 ~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~ 123 (272)
T 3rfs_A 45 QIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQS 123 (272)
T ss_dssp EEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCC
T ss_pred eeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCc
Confidence 344445555555555666666666666666666655666666666666666666666555566666666666666 3444
Q ss_pred cCcc-ccCCCCCCEEEccCCCCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEec
Q 017975 224 LPVG-ISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR 300 (363)
Q Consensus 224 lp~~-i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~ 300 (363)
+|.. ++.+++|++|++++|.++.+|.. +..+. |+.|+++.|.++.+|. ..+..+++|+.|++.+|.+.
T Consensus 124 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE---------GVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSSCCS
T ss_pred cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH---------HHhcCCccCCEEECCCCcCC
Confidence 4332 56666666666666666665543 35555 6666666666655542 33455666666666666655
Q ss_pred cCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975 301 GSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC 359 (363)
Q Consensus 301 ~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 359 (363)
+..+ ..+..++++ +.|++++|... ..+++|+.|++++|...+.+|..
T Consensus 195 ~~~~-~~~~~l~~L----~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 195 SVPD-GVFDRLTSL----QYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCCT-TTTTTCTTC----CEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred ccCH-HHHhCCcCC----CEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCc
Confidence 4332 334445544 66666665321 22345556666666665555554
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=6.1e-19 Score=155.81 Aligned_cols=195 Identities=22% Similarity=0.358 Sum_probs=162.1
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 220 (363)
..+.+.+..++.+|... .++++.|++++|.++.++. +..+++|++|++++|.++.+++..|.++++|++|++++| .
T Consensus 19 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~ 96 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-K 96 (270)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-C
T ss_pred CEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-c
Confidence 45777777777777532 2689999999999999874 789999999999999999999987899999999999999 6
Q ss_pred ccccCc-cccCCCCCCEEEccCCCCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEE
Q 017975 221 LTELPV-GISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIAL 297 (363)
Q Consensus 221 ~~~lp~-~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~ 297 (363)
++.+|. .+..+++|++|++++|.++.+|.. +..++ |+.|+++.|.++.+|. ..+..+++|+.|++.+|
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK---------GVFDKLTSLKELRLYNN 167 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSS
T ss_pred CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH---------hHccCCcccceeEecCC
Confidence 777664 568999999999999999998754 67888 9999999999988873 45788999999999999
Q ss_pred EeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975 298 SLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE 353 (363)
Q Consensus 298 ~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l 353 (363)
.+.+..+ ..+..++++ ++|++++|.........+..+++|+.|++++|+..
T Consensus 168 ~l~~~~~-~~~~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 168 QLKRVPE-GAFDKLTEL----KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCSCCCT-TTTTTCTTC----CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCcEeCh-hHhccCCCc----CEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 8876543 456666776 99999998754444456888999999999999854
No 7
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=1.6e-19 Score=159.65 Aligned_cols=189 Identities=23% Similarity=0.306 Sum_probs=158.2
Q ss_pred CCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcc-ccC
Q 017975 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISS 230 (363)
Q Consensus 152 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~ 230 (363)
.........+++++.|++.++.++.++.+..+++|++|++++|.+..++ . +..+++|++|++++| .++.+|.. ++.
T Consensus 31 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~L~~n-~l~~~~~~~~~~ 107 (272)
T 3rfs_A 31 VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-A-LKELTNLTYLILTGN-QLQSLPNGVFDK 107 (272)
T ss_dssp TTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-G-GTTCTTCCEEECTTS-CCCCCCTTTTTT
T ss_pred cccccccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-h-hcCCCCCCEEECCCC-ccCccChhHhcC
Confidence 3444556677899999999999999999999999999999999998875 3 899999999999999 66666644 799
Q ss_pred CCCCCEEEccCCCCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccc
Q 017975 231 LVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENF 308 (363)
Q Consensus 231 L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 308 (363)
+++|++|++++|.++.+|.. +..+. |+.|+++.|.++.+|. ..+..+++|+.|++.+|.+.+..+ ..+
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------~~~~~l~~L~~L~l~~n~l~~~~~-~~~ 177 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK---------GVFDKLTNLTELDLSYNQLQSLPE-GVF 177 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSSCCCCCCT-TTT
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH---------HHhccCccCCEEECCCCCcCccCH-HHh
Confidence 99999999999999998765 68888 9999999999988873 456789999999999998875443 456
Q ss_pred cCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccc
Q 017975 309 LKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNV 357 (363)
Q Consensus 309 ~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~ 357 (363)
..++++ +.|++++|......+..+..+++|+.|++++|+.....|
T Consensus 178 ~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 178 DKLTQL----KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TTCTTC----CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCccC----CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 677776 999999987655545568899999999999998876655
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=2.5e-19 Score=161.74 Aligned_cols=198 Identities=17% Similarity=0.203 Sum_probs=142.9
Q ss_pred ccccccccceEEEeec-ccccc-cC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCC
Q 017975 156 PKIEEWEGVKRISLME-NEIQS-LP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV 232 (363)
Q Consensus 156 ~~~~~~~~l~~L~l~~-~~~~~-l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~ 232 (363)
+.+..++++++|++++ |.+.. +| .+..+++|++|++++|.+....+..+.++++|++|++++|.....+|..++.++
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 3566777888888874 66653 44 367778888888888887744444477888888888888844446777788888
Q ss_pred CCCEEEccCCCCC-ccchhhhccc--hhccccCcCccC-cCCC--C--CCCCC---------CcccchhhhccccccceE
Q 017975 233 SLHHLDLSSTKVR-GLPQELKALV--LRMLHCGSNHWP-IAEE--G--NVLSD---------DAESLMKEIHCLEQLNLI 295 (363)
Q Consensus 233 ~L~~L~l~~~~l~-~lP~~i~~L~--L~~L~~~~~~l~-~lp~--~--~l~~l---------~~~~~l~~l~~L~~L~l~ 295 (363)
+|++|++++|.++ .+|..++.+. |+.|+++.|.+. .+|. . .+..+ ..|..+..+++|+.|++.
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence 8888888888877 5777777775 777777777776 3332 1 12221 355677888899999998
Q ss_pred EEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975 296 ALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC 359 (363)
Q Consensus 296 ~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 359 (363)
+|.+.+..+ .+..++++ ++|++++|......+..+..+++|+.|++++|++.+.+|+.
T Consensus 230 ~N~l~~~~~--~~~~l~~L----~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 230 KNSLAFDLG--KVGLSKNL----NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp SSEECCBGG--GCCCCTTC----CEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred CCceeeecC--cccccCCC----CEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 888875543 25555555 99999998765455677889999999999999988888775
No 9
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=4.5e-19 Score=159.46 Aligned_cols=208 Identities=22% Similarity=0.245 Sum_probs=150.3
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCcccc---chHHhcCCCCCCEEEcccC
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEI---TESFFQSLPSLRVLNLSVN 218 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~---~~~~~~~l~~L~~L~L~~~ 218 (363)
.+.+.+..++.+|.. -.+++++|++++|.++.+|. +..+++|++|++++|.+... +.. +..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCC
Confidence 455566666766652 23689999999999988875 67889999999999988755 344 667899999999999
Q ss_pred CCccccCccccCCCCCCEEEccCCCCCccch--hhhccc-hhccccCcCccCcCCC---CCCCCC-------------Cc
Q 017975 219 HYLTELPVGISSLVSLHHLDLSSTKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEE---GNVLSD-------------DA 279 (363)
Q Consensus 219 ~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~--~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l-------------~~ 279 (363)
.+..+|..+..+++|++|++++|.++.+|. .+..+. |+.|+++.|.+...+. .++.++ ..
T Consensus 89 -~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 89 -GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp -SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred -ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 777888888889999999999988888764 677777 8888888888765543 222222 14
Q ss_pred ccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975 280 ESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC 359 (363)
Q Consensus 280 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 359 (363)
|..+..+++|+.|++.+|.+.+..+ ..+..++++ +.|++++|.........+..+++|+.|++++|.+....|+.
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSL----QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTC----CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCC----CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 5566777778888777776654433 445555555 78888877654443445777788888888888777666543
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=6.7e-19 Score=156.74 Aligned_cols=209 Identities=21% Similarity=0.184 Sum_probs=131.6
Q ss_pred eEEecCCCCCCCc--cccccccceEEEeecccccccC--CCCCCCCccEEEeccCC-ccccchHHhcCCCCCCEEEcccC
Q 017975 144 FLVRAGVGLTDAP--KIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNH-IEEITESFFQSLPSLRVLNLSVN 218 (363)
Q Consensus 144 ~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~~ 218 (363)
.+...+..+..++ .+..++++++|++++|.++.++ .+..+++|++|++++|. +..+++..+..+++|++|++++|
T Consensus 36 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115 (285)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence 3444444444433 2455667777777777766653 35667777777777775 66665555677777777777777
Q ss_pred CCcccc-CccccCCCCCCEEEccCCCCCccchh-hhccc-hhccccCcCccCcCCC---CCCCCC------------Ccc
Q 017975 219 HYLTEL-PVGISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEE---GNVLSD------------DAE 280 (363)
Q Consensus 219 ~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~---~~l~~l------------~~~ 280 (363)
.++.+ |..++.+++|++|++++|.++.+|.. +..+. |+.|+++.|.++.+|. .++.++ ..|
T Consensus 116 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 194 (285)
T 1ozn_A 116 -GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194 (285)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred -cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH
Confidence 34443 55566777777777777777766543 56666 7777777777666654 222222 235
Q ss_pred cchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975 281 SLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC 359 (363)
Q Consensus 281 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 359 (363)
..+..+++|+.|++.+|.+.+.. ...+..++++ +.|++++|+.... .....-...++.+..+.+...-..|+.
T Consensus 195 ~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L----~~L~l~~N~~~c~-~~~~~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 195 HAFRDLGRLMTLYLFANNLSALP-TEALAPLRAL----QYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTC----CEEECCSSCEECS-GGGHHHHHHHHHCCSEECCCBEEESGG
T ss_pred hHccCcccccEeeCCCCcCCcCC-HHHcccCccc----CEEeccCCCccCC-CCcHHHHHHHHhcccccCccccCCchH
Confidence 67888999999999999887643 3557777777 9999999874322 111112234555556666655555553
No 11
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=1.3e-18 Score=156.74 Aligned_cols=187 Identities=19% Similarity=0.318 Sum_probs=154.2
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 222 (363)
..+...+..+..++.+..+++++.|++++|.+..++.+..+++|++|++++|.+..++. +..+++|++|++++| .++
T Consensus 44 ~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~ 120 (308)
T 1h6u_A 44 TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTST-QIT 120 (308)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTS-CCC
T ss_pred CEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCC-CCC
Confidence 45566677777777888889999999999999888888899999999999999888753 889999999999999 677
Q ss_pred ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975 223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG 301 (363)
Q Consensus 223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~ 301 (363)
.+| .++.+++|++|++++|.++.+|. +..+. |+.|+++.|.++.++ . +..+++|+.|++.+|.+.+
T Consensus 121 ~~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~----------~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 121 DVT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT----------P-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG----------G-GTTCTTCCEEECCSSCCCC
T ss_pred Cch-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh----------h-hcCCCCCCEEECCCCccCc
Confidence 777 48999999999999999998876 77777 999999999887765 3 7788999999999998876
Q ss_pred CcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975 302 SRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 302 ~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~ 354 (363)
..+ +..++++ ++|++++|..... ..+..+++|+.|++++|+...
T Consensus 188 ~~~---l~~l~~L----~~L~L~~N~l~~~--~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP---LASLPNL----IEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG---GGGCTTC----CEEECTTSCCCBC--GGGTTCTTCCEEEEEEEEEEC
T ss_pred Chh---hcCCCCC----CEEEccCCccCcc--ccccCCCCCCEEEccCCeeec
Confidence 543 5666666 9999999874322 248889999999999998765
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=2.9e-18 Score=153.02 Aligned_cols=192 Identities=21% Similarity=0.188 Sum_probs=150.0
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 220 (363)
..+.+.+..++.+|... .+.++.|++++|.++.++ .+..+++|++|++++|.++.+++ .+.+++|++|++++| .
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N-~ 88 (290)
T 1p9a_G 13 LEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHN-Q 88 (290)
T ss_dssp CEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSS-C
T ss_pred cEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCC-c
Confidence 34556666677666422 268889999999888764 47788999999999998888776 378889999999998 7
Q ss_pred ccccCccccCCCCCCEEEccCCCCCccch-hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEE
Q 017975 221 LTELPVGISSLVSLHHLDLSSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALS 298 (363)
Q Consensus 221 ~~~lp~~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~ 298 (363)
++.+|..+..+++|++|++++|.++.+|. .+..+. |+.|+++.|+++.+|. ..+..+++|+.|++.+|.
T Consensus 89 l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~---------~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP---------GLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT---------TTTTTCTTCCEEECTTSC
T ss_pred CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh---------hhcccccCCCEEECCCCc
Confidence 78888888889999999999999988874 577888 8998899998888773 456778899999999888
Q ss_pred eccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975 299 LRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE 353 (363)
Q Consensus 299 ~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l 353 (363)
+.+. +...+..++++ +.|++++|... ..+..+..+.+|+.|++++|+..
T Consensus 160 l~~l-~~~~~~~l~~L----~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTEL-PAGLLNGLENL----DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCC-CTTTTTTCTTC----CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCcc-CHHHhcCcCCC----CEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 8754 33555666766 89999987643 33556777788999999998864
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=3.2e-18 Score=162.38 Aligned_cols=204 Identities=23% Similarity=0.306 Sum_probs=116.0
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 221 (363)
.+.+.+..++.+|.. -.++++.|++++|.++.++ .+..+++|++|++++|.+..+++..|.++++|++|+|++| .+
T Consensus 58 ~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l 135 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WL 135 (452)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred EEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cC
Confidence 455556666666542 1256777777777777663 3667777777777777777777666777777777777777 55
Q ss_pred cccCcc-ccCCCCCCEEEccCCCCCccch-hhhccc-hhccccCc-CccCcCCC---CCCCCC----------Ccccchh
Q 017975 222 TELPVG-ISSLVSLHHLDLSSTKVRGLPQ-ELKALV-LRMLHCGS-NHWPIAEE---GNVLSD----------DAESLMK 284 (363)
Q Consensus 222 ~~lp~~-i~~L~~L~~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~-~~l~~lp~---~~l~~l----------~~~~~l~ 284 (363)
+.+|.. ++.+++|++|++++|.++.+|. .+..+. |+.|+++. +.+..+|. .++.++ ...+.+.
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 215 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLT 215 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCT
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccccc
Confidence 555543 6677777777777777777654 344444 55555544 34443332 111111 1112344
Q ss_pred hhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975 285 EIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 285 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~ 354 (363)
.+++|+.|++.+|.+.+..+ ..+..++++ +.|++++|......+..+..+++|+.|++++|.+..
T Consensus 216 ~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 216 PLVGLEELEMSGNHFPEIRP-GSFHGLSSL----KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp TCTTCCEEECTTSCCSEECG-GGGTTCTTC----CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccccccEEECcCCcCcccCc-ccccCccCC----CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 45555555555555543322 334444444 555555554433333445555555555555555443
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=163.17 Aligned_cols=179 Identities=22% Similarity=0.347 Sum_probs=107.2
Q ss_pred cccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCc-cccCCCCCC
Q 017975 159 EEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLH 235 (363)
Q Consensus 159 ~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~ 235 (363)
..+++++.|++++|.++.++. +..+++|++|++++|.+..+++..|.++++|++|++++|..+..+|. .+.++++|+
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188 (440)
T ss_dssp TTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred cCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC
Confidence 334455555555555554442 44555555555555555555544455555555555555444444443 345555555
Q ss_pred EEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCch
Q 017975 236 HLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL 314 (363)
Q Consensus 236 ~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l 314 (363)
+|++++|.++.+| .+..+. |+.|+++.|.++.++ |..+..+++|+.|++.+|.+.+..+ ..+..+++|
T Consensus 189 ~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~---------~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 257 (440)
T 3zyj_A 189 YLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIR---------PGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSL 257 (440)
T ss_dssp EEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEEC---------TTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTC
T ss_pred eecCCCCcCcccc-ccCCCcccCEEECCCCccCccC---------hhhhccCccCCEEECCCCceeEECh-hhhcCCCCC
Confidence 5555555555554 244444 555555555554443 3667788888888888888765543 556666666
Q ss_pred hhhhheeeecccCCCCcCCcccccccccceeeeccCCC
Q 017975 315 QNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNL 352 (363)
Q Consensus 315 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 352 (363)
+.|++++|.........+..+++|+.|++++|+.
T Consensus 258 ----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 258 ----VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ----CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ----CEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 8899998875544455678888999999998874
No 15
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=3.1e-18 Score=154.22 Aligned_cols=180 Identities=21% Similarity=0.296 Sum_probs=153.8
Q ss_pred CCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCC
Q 017975 153 TDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV 232 (363)
Q Consensus 153 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~ 232 (363)
........+++++.|++.++.++.++.+..+++|++|++++|.+..+++ +..+++|++|++++| .++.+| .++.++
T Consensus 32 ~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~ 107 (308)
T 1h6u_A 32 TDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQ 107 (308)
T ss_dssp TSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCT
T ss_pred CceecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCC
Confidence 3334456778999999999999999999999999999999999999887 899999999999999 688876 799999
Q ss_pred CCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCC
Q 017975 233 SLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKF 311 (363)
Q Consensus 233 ~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 311 (363)
+|++|++++|.++.+|. +..+. |+.|+++.|.++.++ .+..+++|+.|++.+|.+.+..+ +..+
T Consensus 108 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-----------~l~~l~~L~~L~l~~n~l~~~~~---l~~l 172 (308)
T 1h6u_A 108 SIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS-----------PLAGLTNLQYLSIGNAQVSDLTP---LANL 172 (308)
T ss_dssp TCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-----------GGGGCTTCCEEECCSSCCCCCGG---GTTC
T ss_pred CCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCc-----------cccCCCCccEEEccCCcCCCChh---hcCC
Confidence 99999999999999875 88888 999999999988776 27889999999999998876432 6666
Q ss_pred CchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccc
Q 017975 312 PKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNV 357 (363)
Q Consensus 312 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~ 357 (363)
+++ +.|++++|.... +..+..+++|+.|++++|.+....+
T Consensus 173 ~~L----~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 173 SKL----TTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp TTC----CEEECCSSCCCC--CGGGGGCTTCCEEECTTSCCCBCGG
T ss_pred CCC----CEEECCCCccCc--ChhhcCCCCCCEEEccCCccCcccc
Confidence 666 999999986432 2348899999999999999876543
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=160.69 Aligned_cols=209 Identities=22% Similarity=0.267 Sum_probs=153.1
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 221 (363)
.+.+.+..++.+|... .++++.|++++|.++.++ .+..+++|++|++++|.+..+++..|.++++|++|+|++| .+
T Consensus 47 ~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l 124 (440)
T 3zyj_A 47 KVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RL 124 (440)
T ss_dssp EEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CC
T ss_pred EEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cC
Confidence 4566666677776522 267888999988888775 4778888999999999888888777888889999999988 66
Q ss_pred cccCc-cccCCCCCCEEEccCCCCCccch-hhhccc-hhccccCc-CccCcCCC---CCCCCC----------Ccccchh
Q 017975 222 TELPV-GISSLVSLHHLDLSSTKVRGLPQ-ELKALV-LRMLHCGS-NHWPIAEE---GNVLSD----------DAESLMK 284 (363)
Q Consensus 222 ~~lp~-~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~-~~l~~lp~---~~l~~l----------~~~~~l~ 284 (363)
+.+|. .+..+++|++|++++|.+..+|. .+..+. |+.|+++. +.+..++. .++.++ ...+.+.
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 204 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT 204 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCT
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccC
Confidence 67665 58888889999998888888765 566666 77777765 45555553 112111 1112466
Q ss_pred hhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975 285 EIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC 359 (363)
Q Consensus 285 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 359 (363)
.+++|+.|++.+|.+.+..+ ..+..++++ +.|++++|......+..+.++++|+.|++++|.+....++.
T Consensus 205 ~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSAIRP-GSFQGLMHL----QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp TCSSCCEEECTTSCCCEECT-TTTTTCTTC----CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCcccCEEECCCCccCccCh-hhhccCccC----CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence 77888888888887765443 566777766 89999988765555667889999999999999887665543
No 17
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=4.3e-18 Score=150.78 Aligned_cols=186 Identities=21% Similarity=0.175 Sum_probs=92.1
Q ss_pred cceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEc
Q 017975 163 GVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDL 239 (363)
Q Consensus 163 ~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l 239 (363)
++++|++++|.++.++ .+..+++|++|++++|.+..+++..+.++++|++|++++| .++.++ ..++++++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEEC
Confidence 4555555555554443 2444555555555555555444444455555555555555 233222 34445555555555
Q ss_pred cCCCCCccch-hhhccc-hhccccCcCccCcC--CC--C---CCCCC---------Ccccchhhhcccc----ccceEEE
Q 017975 240 SSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIA--EE--G---NVLSD---------DAESLMKEIHCLE----QLNLIAL 297 (363)
Q Consensus 240 ~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~l--p~--~---~l~~l---------~~~~~l~~l~~L~----~L~l~~~ 297 (363)
++|.+..++. .+..++ |+.|+++.|.++.+ |. . ++..+ ..+..+..+.+|+ .|++.+|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 5554444433 344444 44444444444431 21 0 00000 0123455555555 4444455
Q ss_pred EeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCc
Q 017975 298 SLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDW 355 (363)
Q Consensus 298 ~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~ 355 (363)
.+.+..+ . .....+ |+.|++++|.........+..+++|+.|++++|+....
T Consensus 188 ~l~~~~~-~-~~~~~~----L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 188 PMNFIQP-G-AFKEIR----LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCCEECT-T-SSCSCC----EEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cccccCc-c-ccCCCc----ccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 4443221 1 112223 48899998875444344578899999999998876643
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=159.58 Aligned_cols=200 Identities=24% Similarity=0.343 Sum_probs=159.2
Q ss_pred ceeEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975 142 EKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH 219 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~ 219 (363)
.......+..++.+|.. -.+++++|++++|.++.++. +..+++|++|++++|.++.+++..+.++++|++|++++|
T Consensus 33 ~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n- 110 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN- 110 (353)
T ss_dssp TSEEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CeEeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-
Confidence 34456666777777752 23589999999999998875 889999999999999999988877999999999999999
Q ss_pred CccccCcc-ccCCCCCCEEEccCCCCCccch--hhhccc-hhccccCcC-ccCcCCCCCCCCCCcccchhhhccccccce
Q 017975 220 YLTELPVG-ISSLVSLHHLDLSSTKVRGLPQ--ELKALV-LRMLHCGSN-HWPIAEEGNVLSDDAESLMKEIHCLEQLNL 294 (363)
Q Consensus 220 ~~~~lp~~-i~~L~~L~~L~l~~~~l~~lP~--~i~~L~-L~~L~~~~~-~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l 294 (363)
.++.+|.. ++++++|++|++++|.++.+|. .+..++ |+.|+++.| .+..++. ..+..+++|+.|++
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~---------~~~~~l~~L~~L~l 181 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR---------KDFAGLTFLEELEI 181 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT---------TTTTTCCEEEEEEE
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH---------HHccCCCCCCEEEC
Confidence 77788876 8999999999999999999987 678888 999999887 4666652 56778889999999
Q ss_pred EEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccc
Q 017975 295 IALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNV 357 (363)
Q Consensus 295 ~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~ 357 (363)
.+|.+.+..+ ..+..++++ ++|++++|.........+..+++|+.|++++|......+
T Consensus 182 ~~n~l~~~~~-~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 182 DASDLQSYEP-KSLKSIQNV----SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp EETTCCEECT-TTTTTCSEE----EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred CCCCcCccCH-HHHhccccC----CeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence 9888765533 566777776 999999877422222234568899999999998776543
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=2e-18 Score=155.88 Aligned_cols=192 Identities=17% Similarity=0.171 Sum_probs=152.2
Q ss_pred ccceEEEeecccccc---cC-CCCCCCCccEEEecc-CCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCE
Q 017975 162 EGVKRISLMENEIQS---LP-QIPTCPRLQTLLLEY-NHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHH 236 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~---l~-~~~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 236 (363)
.+++.|+++++.+.. +| .+..+++|++|++++ |.+....+..++++++|++|++++|.....+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 479999999999984 55 578999999999995 8888655555999999999999999544589999999999999
Q ss_pred EEccCCCCC-ccchhhhccc-hhccccCcCccC-cCCC--C----CCCCC---------CcccchhhhccccccceEEEE
Q 017975 237 LDLSSTKVR-GLPQELKALV-LRMLHCGSNHWP-IAEE--G----NVLSD---------DAESLMKEIHCLEQLNLIALS 298 (363)
Q Consensus 237 L~l~~~~l~-~lP~~i~~L~-L~~L~~~~~~l~-~lp~--~----~l~~l---------~~~~~l~~l~~L~~L~l~~~~ 298 (363)
|++++|.+. .+|..+..++ |+.|+++.|.++ .+|. . ++..+ ..|..+..++ |+.|++.+|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999998 6899999999 999999999987 6664 2 22222 4556666676 8888888887
Q ss_pred eccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccccc
Q 017975 299 LRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCA 360 (363)
Q Consensus 299 ~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~ 360 (363)
+.+..+ ..+..++++ +.|++++|..... ++.+..+++|++|++++|.+.+.+|+..
T Consensus 209 l~~~~~-~~~~~l~~L----~~L~L~~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 209 LEGDAS-VLFGSDKNT----QKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp EEECCG-GGCCTTSCC----SEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred ccCcCC-HHHhcCCCC----CEEECCCCceeee-cCcccccCCCCEEECcCCcccCcCChHH
Confidence 776544 556666666 8899988764322 4447788999999999999887777643
No 20
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=3.1e-18 Score=148.36 Aligned_cols=187 Identities=13% Similarity=0.213 Sum_probs=150.8
Q ss_pred CCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCC-ccccchHHhcCCCCCCEEEccc-CCCccccC-c
Q 017975 152 LTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNH-IEEITESFFQSLPSLRVLNLSV-NHYLTELP-V 226 (363)
Q Consensus 152 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~-~~~~~~lp-~ 226 (363)
++.+|. -.++++.|++++|.++.++. +..+++|++|++++|. ++.+++..|.++++|++|++++ | .++.+| .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHH
Confidence 556666 33589999999999999875 7889999999999997 9999887799999999999998 6 777776 4
Q ss_pred cccCCCCCCEEEccCCCCCccchhhhccc-hh---ccccCcC-ccCcCCCCCCCCCCcccchhhhcccc-ccceEEEEec
Q 017975 227 GISSLVSLHHLDLSSTKVRGLPQELKALV-LR---MLHCGSN-HWPIAEEGNVLSDDAESLMKEIHCLE-QLNLIALSLR 300 (363)
Q Consensus 227 ~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~---~L~~~~~-~l~~lp~~~l~~l~~~~~l~~l~~L~-~L~l~~~~~~ 300 (363)
.+..+++|++|++++|.++.+|. +..+. |+ .|+++.| .++.+|. ..+..+++|+ .|++.+|.+.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~---------~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV---------NAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT---------TTTTTTBSSEEEEECCSCCCC
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCc---------ccccchhcceeEEEcCCCCCc
Confidence 68899999999999999999997 77776 66 9999999 8888873 4577889999 9999988876
Q ss_pred cCcccccccCCCchhhhhheeeecccCC-CCcCCcccccc-cccceeeeccCCCCCccc
Q 017975 301 GSRGVENFLKFPKLQNITQALHIKDCNS-LPLNLLHLANM-EHLQLFSIWDSNLEDWNV 357 (363)
Q Consensus 301 ~~~~~~~l~~l~~l~~~L~~L~l~~~~~-~~~~~~~l~~l-~~L~~L~l~~c~~l~~~~ 357 (363)
..+...+.. +++ +.|++++|.. .......+..+ ++|+.|++++|++....+
T Consensus 170 -~i~~~~~~~-~~L----~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~ 222 (239)
T 2xwt_C 170 -SVQGYAFNG-TKL----DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222 (239)
T ss_dssp -EECTTTTTT-CEE----EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred -ccCHhhcCC-CCC----CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence 333233333 444 9999999863 33334568888 999999999998875443
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.75 E-value=2.5e-18 Score=173.59 Aligned_cols=197 Identities=21% Similarity=0.224 Sum_probs=123.9
Q ss_pred ccccccceEEEeecccccc-cC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCC
Q 017975 158 IEEWEGVKRISLMENEIQS-LP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLH 235 (363)
Q Consensus 158 ~~~~~~l~~L~l~~~~~~~-l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 235 (363)
+..+++++.|++.+|.+.. +| .+..+++|++|++++|.+....+..+.++++|++|++++|.....+|..++.+++|+
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 3344555555555555542 23 245667777777777777755454577777788888887755557777778888888
Q ss_pred EEEccCCCCC-ccchhhhccc-hhccccCcCccC-cCCC-----------------------------------------
Q 017975 236 HLDLSSTKVR-GLPQELKALV-LRMLHCGSNHWP-IAEE----------------------------------------- 271 (363)
Q Consensus 236 ~L~l~~~~l~-~lP~~i~~L~-L~~L~~~~~~l~-~lp~----------------------------------------- 271 (363)
+|++++|.+. .+|..++.++ |+.|+++.|.+. .+|.
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence 8888888777 4677777777 777777777664 3332
Q ss_pred -------------------------------------------CCCCCCCcccchhhhccccccceEEEEeccCcccccc
Q 017975 272 -------------------------------------------GNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENF 308 (363)
Q Consensus 272 -------------------------------------------~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 308 (363)
.|..+..+|..++.+++|+.|++++|.+++..| ..+
T Consensus 598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l 676 (768)
T 3rgz_A 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP-DEV 676 (768)
T ss_dssp TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGG
T ss_pred cccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC-hHH
Confidence 000111445556666666666666666665554 445
Q ss_pred cCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975 309 LKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC 359 (363)
Q Consensus 309 ~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 359 (363)
+.++++ +.|++++|+.....|..+.++++|++|++++|+..+.+|+.
T Consensus 677 ~~L~~L----~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 677 GDLRGL----NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGCTTC----CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred hCCCCC----CEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 555555 66666666554444556666667777777777666666653
No 22
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=9.3e-18 Score=146.53 Aligned_cols=168 Identities=22% Similarity=0.341 Sum_probs=94.6
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 221 (363)
.+.+.+..++.+|.... +.++.|++++|.+..++. +..+++|++|++++|.++.+++..+.++++|++|++++| .+
T Consensus 18 ~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 95 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QL 95 (251)
T ss_dssp EEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CC
T ss_pred EEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cc
Confidence 34455555555543221 456666666666665542 556666666666666666666555666666666666666 44
Q ss_pred cccC-ccccCCCCCCEEEccCCCCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEE
Q 017975 222 TELP-VGISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALS 298 (363)
Q Consensus 222 ~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~ 298 (363)
+.+| ..++.+++|++|++++|.++.+|.. +..+. |+.|+++.|.++.+|. ..+..+++|+.|++.+|.
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA---------GAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSSC
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH---------HHcCcCcCCCEEECCCCc
Confidence 4443 3445666666666666666666554 34555 6666666666655552 245555666666666665
Q ss_pred eccCcccccccCCCchhhhhheeeecccC
Q 017975 299 LRGSRGVENFLKFPKLQNITQALHIKDCN 327 (363)
Q Consensus 299 ~~~~~~~~~l~~l~~l~~~L~~L~l~~~~ 327 (363)
+.+..+ ..+..++++ +.|++++|.
T Consensus 167 l~~~~~-~~~~~l~~L----~~L~l~~N~ 190 (251)
T 3m19_A 167 LQSVPH-GAFDRLGKL----QTITLFGNQ 190 (251)
T ss_dssp CSCCCT-TTTTTCTTC----CEEECCSCC
T ss_pred CCccCH-HHHhCCCCC----CEEEeeCCc
Confidence 553322 334444444 556666554
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=6.8e-18 Score=150.57 Aligned_cols=180 Identities=22% Similarity=0.218 Sum_probs=139.2
Q ss_pred ccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEE
Q 017975 158 IEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHL 237 (363)
Q Consensus 158 ~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 237 (363)
+..+++++.+++.++.++.+|... .++++.|++++|.+..+++..+.++++|++|++++| .++.+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence 445567888888888888887422 268888899888888887777888888999999888 67777754 788888999
Q ss_pred EccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhh
Q 017975 238 DLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQN 316 (363)
Q Consensus 238 ~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~ 316 (363)
++++|.++.+|..+..+. |+.|+++.|+++.+|. ..+..+++|+.|++.+|.+.+. +...+..++++
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~---------~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L-- 150 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL---------GALRGLGELQELYLKGNELKTL-PPGLLTPTPKL-- 150 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS---------STTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTC--
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCH---------HHHcCCCCCCEEECCCCCCCcc-ChhhcccccCC--
Confidence 998888888888888888 8888888888887763 5577788888888888887654 33455666666
Q ss_pred hhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975 317 ITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 317 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~ 354 (363)
+.|++++|.........+..+++|+.|++++|.+..
T Consensus 151 --~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 151 --EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp --CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred --CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence 888888876544433456778888888988887763
No 24
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=4.3e-18 Score=152.00 Aligned_cols=177 Identities=23% Similarity=0.308 Sum_probs=138.1
Q ss_pred CCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCC
Q 017975 153 TDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV 232 (363)
Q Consensus 153 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~ 232 (363)
........+++++.|++++|.++.++.+..+++|++|++++|.++.+++ +.++++|++|++++| .++.+| .++.++
T Consensus 37 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~ 112 (291)
T 1h6t_A 37 TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLS-SLKDLK 112 (291)
T ss_dssp TSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGG-GGTTCT
T ss_pred ccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCCh-hhccCC
Confidence 3344456678888899988888888888888889999999888888776 788889999999988 677766 588888
Q ss_pred CCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCC
Q 017975 233 SLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKF 311 (363)
Q Consensus 233 ~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 311 (363)
+|++|++++|.++.+| .+..+. |+.|+++.|.++.++ .+..+++|+.|++.+|.+.+..+ +..+
T Consensus 113 ~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-----------~l~~l~~L~~L~L~~N~l~~~~~---l~~l 177 (291)
T 1h6t_A 113 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-----------VLSRLTKLDTLSLEDNQISDIVP---LAGL 177 (291)
T ss_dssp TCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-----------GGGGCTTCSEEECCSSCCCCCGG---GTTC
T ss_pred CCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcch-----------hhccCCCCCEEEccCCccccchh---hcCC
Confidence 8999999988888874 577777 888888888876653 57778888888888887766543 5666
Q ss_pred CchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975 312 PKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 312 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~ 354 (363)
+++ +.|++++|... . ++.+..+++|+.|++++|+...
T Consensus 178 ~~L----~~L~L~~N~i~-~-l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 178 TKL----QNLYLSKNHIS-D-LRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTC----CEEECCSSCCC-B-CGGGTTCTTCSEEEEEEEEEEC
T ss_pred Ccc----CEEECCCCcCC-C-ChhhccCCCCCEEECcCCcccC
Confidence 666 88888887532 2 3457888888899988887654
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=4.9e-18 Score=161.14 Aligned_cols=189 Identities=19% Similarity=0.198 Sum_probs=125.3
Q ss_pred ccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCc-cccCCCCC
Q 017975 158 IEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSL 234 (363)
Q Consensus 158 ~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L 234 (363)
+..+++++.|++++|.++.++ .+..+++|++|++++|.++.+++..+..+++|++|+|++| .++.+|. .+..+++|
T Consensus 95 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 173 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSL 173 (452)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTC
T ss_pred cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcc
Confidence 445566666666666666654 3556666666666666666666665666666666666666 4444443 45566666
Q ss_pred CEEEccCC-CCCccch-hhhccc-hhccccCcCccCcCCC-CC---CCCC---------CcccchhhhccccccceEEEE
Q 017975 235 HHLDLSST-KVRGLPQ-ELKALV-LRMLHCGSNHWPIAEE-GN---VLSD---------DAESLMKEIHCLEQLNLIALS 298 (363)
Q Consensus 235 ~~L~l~~~-~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~-~~---l~~l---------~~~~~l~~l~~L~~L~l~~~~ 298 (363)
++|++++| .+..+|. .+..+. |+.|+++.|.++.+|. .. +..+ ..|..+..+++|+.|++.+|.
T Consensus 174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred cEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 66666663 4555544 345555 6666666666665554 22 2111 235678899999999999998
Q ss_pred eccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCC
Q 017975 299 LRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNL 352 (363)
Q Consensus 299 ~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 352 (363)
+.+..+ ..+..++++ +.|++++|.........+..+++|+.|++++|+.
T Consensus 254 l~~~~~-~~~~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 254 VSLIER-NAFDGLASL----VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCEECT-TTTTTCTTC----CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CceECH-HHhcCCCCC----CEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 876544 567777776 9999999876544455688899999999999974
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=1.9e-17 Score=150.54 Aligned_cols=206 Identities=20% Similarity=0.270 Sum_probs=124.1
Q ss_pred EEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975 145 LVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222 (363)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 222 (363)
+.+.+..+..+|... .+.++.|++++|.++.++. +..+++|++|++++|.++.+.+..+.++++|++|++++| .++
T Consensus 36 l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~ 113 (330)
T 1xku_A 36 VQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLK 113 (330)
T ss_dssp EECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCS
T ss_pred EEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCC
Confidence 333444444444311 2456666666666665542 555666666666666666554444566666666666666 444
Q ss_pred ccCcc----------------------ccCCCCCCEEEccCCCCCc---cchhhhccc-hhccccCcCccCcCCC---CC
Q 017975 223 ELPVG----------------------ISSLVSLHHLDLSSTKVRG---LPQELKALV-LRMLHCGSNHWPIAEE---GN 273 (363)
Q Consensus 223 ~lp~~----------------------i~~L~~L~~L~l~~~~l~~---lP~~i~~L~-L~~L~~~~~~l~~lp~---~~ 273 (363)
.+|.. ++++++|++|++++|.+.. .|..+..++ |+.|+++.|.++.+|. .+
T Consensus 114 ~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~ 193 (330)
T 1xku_A 114 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 193 (330)
T ss_dssp BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTT
T ss_pred ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccccc
Confidence 55443 4455555555555555542 244455555 6666677777666664 22
Q ss_pred CCCC---------CcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccce
Q 017975 274 VLSD---------DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQL 344 (363)
Q Consensus 274 l~~l---------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 344 (363)
+..+ ..+..+..+++|+.|++.+|.+.+..+ ..+..++++ ++|++++|... ..+..+..+++|+.
T Consensus 194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L----~~L~L~~N~l~-~lp~~l~~l~~L~~ 267 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHL----RELHLNNNKLV-KVPGGLADHKYIQV 267 (330)
T ss_dssp CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTC----CEEECCSSCCS-SCCTTTTTCSSCCE
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCC----CEEECCCCcCc-cCChhhccCCCcCE
Confidence 2222 234567788888888888887765433 456666666 88999887643 44556888888999
Q ss_pred eeeccCCCCCcccc
Q 017975 345 FSIWDSNLEDWNVD 358 (363)
Q Consensus 345 L~l~~c~~l~~~~~ 358 (363)
|++++|++....+.
T Consensus 268 L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 268 VYLHNNNISAIGSN 281 (330)
T ss_dssp EECCSSCCCCCCTT
T ss_pred EECCCCcCCccChh
Confidence 99998887765443
No 27
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=1.2e-17 Score=147.35 Aligned_cols=180 Identities=21% Similarity=0.262 Sum_probs=150.5
Q ss_pred cceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccc-cCCCCCCEEEccC
Q 017975 163 GVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSLVSLHHLDLSS 241 (363)
Q Consensus 163 ~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L~l~~ 241 (363)
..+.++++++.++.+|... .++++.|++++|.+..+++..|.++++|++|++++| .++.+|..+ ..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 5788999999999988532 268999999999999999877999999999999999 777887664 8899999999999
Q ss_pred CCCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhh
Q 017975 242 TKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQ 319 (363)
Q Consensus 242 ~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~ 319 (363)
|.+..+|.. +..+. |+.|+++.|.++.+|. ..+..+++|+.|++.+|.+.+.. ...+..++++ +
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L----~ 160 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPP---------RVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSL----K 160 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC----C
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCH---------HHhCcCcCCCEEECCCCcCCccC-HhHccCCccc----c
Confidence 999999865 57788 9999999999988873 56788999999999999887543 3456677776 9
Q ss_pred eeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975 320 ALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD 358 (363)
Q Consensus 320 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 358 (363)
.|++++|......+..+..+++|+.|++++|.+....+.
T Consensus 161 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred eeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 999999875555455688999999999999988765544
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=4.3e-17 Score=148.28 Aligned_cols=205 Identities=22% Similarity=0.280 Sum_probs=131.3
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 221 (363)
.+.+.+..+..+|... .++++.|++++|.++.++ .+..+++|++|++++|.++.+++..+.++++|++|++++| .+
T Consensus 37 ~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 114 (332)
T 2ft3_A 37 VVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HL 114 (332)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CC
T ss_pred EEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cC
Confidence 3444555555555322 357777888777777764 3677777888888777777776666777777777777777 56
Q ss_pred cccCccccCCCCCCEEEccCCCCCccchh-hhccc-hhccccCcCcc-------------------------CcCCC---
Q 017975 222 TELPVGISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHW-------------------------PIAEE--- 271 (363)
Q Consensus 222 ~~lp~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l-------------------------~~lp~--- 271 (363)
+.+|..+. ++|++|++++|.+..+|.. +..++ |+.|+++.|.+ +.+|.
T Consensus 115 ~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~ 192 (332)
T 2ft3_A 115 VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP 192 (332)
T ss_dssp CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC
T ss_pred CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc
Confidence 66665554 5666666666666655543 44444 55555554444 44443
Q ss_pred CCCCCC---------CcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCccccccccc
Q 017975 272 GNVLSD---------DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHL 342 (363)
Q Consensus 272 ~~l~~l---------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L 342 (363)
.++..+ ..+..+..+++|+.|++.+|.+.+..+ ..+..++++ +.|++++|... ..+..+..+++|
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L----~~L~L~~N~l~-~lp~~l~~l~~L 266 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTL----RELHLDNNKLS-RVPAGLPDLKLL 266 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTC----CEEECCSSCCC-BCCTTGGGCTTC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCC----CEEECCCCcCe-ecChhhhcCccC
Confidence 122222 223567778888888888887765433 456666666 88888887643 445568888888
Q ss_pred ceeeeccCCCCCcccc
Q 017975 343 QLFSIWDSNLEDWNVD 358 (363)
Q Consensus 343 ~~L~l~~c~~l~~~~~ 358 (363)
+.|++++|++....++
T Consensus 267 ~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVN 282 (332)
T ss_dssp CEEECCSSCCCBCCTT
T ss_pred CEEECCCCCCCccChh
Confidence 8888888887765544
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.74 E-value=8.2e-18 Score=156.46 Aligned_cols=110 Identities=25% Similarity=0.399 Sum_probs=60.9
Q ss_pred cccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcc-ccCCCCCC
Q 017975 159 EEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLH 235 (363)
Q Consensus 159 ~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~ 235 (363)
..+++++.|++++|.++.++ .+..+++|++|++++|.+..+++..++++++|++|++++| .++.+|.. ++.+++|+
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCc
Confidence 34455666666666555543 3455566666666666655555554555666666666665 45555544 25556666
Q ss_pred EEEccCCCCCccch-hhhccc-hhccccCcCccCcC
Q 017975 236 HLDLSSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIA 269 (363)
Q Consensus 236 ~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~l 269 (363)
+|++++|.+..+|. .+..++ |+.|+++.|.++.+
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 66666665555432 345555 55555555555443
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=7.1e-18 Score=165.54 Aligned_cols=187 Identities=20% Similarity=0.279 Sum_probs=93.6
Q ss_pred ccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcc-ccCCCCCCE
Q 017975 160 EWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHH 236 (363)
Q Consensus 160 ~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~ 236 (363)
.+++++.|++++|.++.++ .+..+++|++|++++|.+..+++..|+++++|++|+|++| .++.+|.. ++.+++|++
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCE
Confidence 3445555555555555443 3445555555555555555555544455555555555555 44444443 245555555
Q ss_pred EEccCCCCCccch-hhhccc-hhccccCcCccCcCCCC------------------------------------------
Q 017975 237 LDLSSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEEG------------------------------------------ 272 (363)
Q Consensus 237 L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~------------------------------------------ 272 (363)
|++++|.+..+|+ .++.++ |+.|+++.|.++.++.+
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~ 231 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence 5555555554432 344444 55555555544433320
Q ss_pred -CCCCC-------CcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccce
Q 017975 273 -NVLSD-------DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQL 344 (363)
Q Consensus 273 -~l~~l-------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 344 (363)
++..+ ..+..+..+++|+.|++.+|.+.+..+ ..+..++++ +.|++++|.... .+..+..+++|+.
T Consensus 232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L----~~L~Ls~N~l~~-l~~~~~~l~~L~~ 305 (597)
T 3oja_B 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRL----ERLYISNNRLVA-LNLYGQPIPTLKV 305 (597)
T ss_dssp SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES-GGGTTCSSC----CEEECTTSCCCE-EECSSSCCTTCCE
T ss_pred CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCH-HHhcCccCC----CEEECCCCCCCC-CCcccccCCCCcE
Confidence 11111 223456667777777777776655433 445555555 666666654211 1233344555555
Q ss_pred eeeccCCCC
Q 017975 345 FSIWDSNLE 353 (363)
Q Consensus 345 L~l~~c~~l 353 (363)
|++++|.+.
T Consensus 306 L~Ls~N~l~ 314 (597)
T 3oja_B 306 LDLSHNHLL 314 (597)
T ss_dssp EECCSSCCC
T ss_pred EECCCCCCC
Confidence 555555544
No 31
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=1.1e-17 Score=148.10 Aligned_cols=188 Identities=17% Similarity=0.175 Sum_probs=131.5
Q ss_pred EEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEccCCCCC
Q 017975 167 ISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVR 245 (363)
Q Consensus 167 L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~ 245 (363)
++..+..+..+|... .++|++|++++|.++.+++..+.++++|++|++++| .++.+| ..++.+++|++|++++|.++
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccC
Confidence 344445566666521 257999999999999998867999999999999999 666665 47999999999999999999
Q ss_pred ccc-hhhhccc-hhccccCcCccCcCCC---CCCCCC-------------CcccchhhhccccccceEEEEeccCccccc
Q 017975 246 GLP-QELKALV-LRMLHCGSNHWPIAEE---GNVLSD-------------DAESLMKEIHCLEQLNLIALSLRGSRGVEN 307 (363)
Q Consensus 246 ~lP-~~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l-------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 307 (363)
.+| ..+..+. |+.|+++.|.+..++. .++.++ ..|..+..+++|+.|++.+|.+.+..+ ..
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~-~~ 168 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TD 168 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-GG
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH-HH
Confidence 886 5688888 9999999999888765 222221 246667777777777777776654322 33
Q ss_pred ccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975 308 FLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD 358 (363)
Q Consensus 308 l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 358 (363)
+..+.++......|++++|..... +.......+|+.|++++|.+....++
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEE-CTTSSCSCCEEEEECCSSCCSCCCTT
T ss_pred hhhhhhccccceeeecCCCccccc-CccccCCCcccEEECCCCceeecCHh
Confidence 444444321111677777654322 22233334789999999887655544
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=159.47 Aligned_cols=204 Identities=24% Similarity=0.293 Sum_probs=134.8
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 220 (363)
..+.+.+..++.+|.. -.++++.|++++|.++.++ .+..+++|++|++++|.+..+++..|.++++|++|+|++| .
T Consensus 14 ~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-R 91 (477)
T ss_dssp TEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-c
Confidence 4566677777777752 2368999999999998875 4788999999999999999887777999999999999999 6
Q ss_pred ccccCcc-ccCCCCCCEEEccCCCCCcc-chhhhccc-hhccccCcCccCcCCC---CCCCCC------------Ccccc
Q 017975 221 LTELPVG-ISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEE---GNVLSD------------DAESL 282 (363)
Q Consensus 221 ~~~lp~~-i~~L~~L~~L~l~~~~l~~l-P~~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l------------~~~~~ 282 (363)
++.+|.. ++++++|++|++++|.+..+ |..+..+. |+.|+++.|.+..++. .++.++ ..+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 7777754 68899999999999998886 55778888 9999999888877653 111111 01122
Q ss_pred hhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975 283 MKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE 353 (363)
Q Consensus 283 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l 353 (363)
+..+++|+.|++.+|.+.+..+ ..+..++++ +.|++++|......+.......+|+.|++++|.+.
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRD-YSFKRLYRL----KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECT-TCSCSCTTC----CEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred hcccCCCcEEeCCCCcCcEeCh-hhcccCccc----ceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence 3444444445444444433221 233333333 55555555443333333333345566666655544
No 33
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=2.6e-18 Score=169.78 Aligned_cols=172 Identities=14% Similarity=0.156 Sum_probs=124.3
Q ss_pred CCCCCCccEEEeccCCccc------------------cchHHhc--CCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017975 180 IPTCPRLQTLLLEYNHIEE------------------ITESFFQ--SLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDL 239 (363)
Q Consensus 180 ~~~l~~L~~L~l~~~~l~~------------------~~~~~~~--~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 239 (363)
+.++++|++|++++|.++. +|+. ++ ++++|++|++++|.....+|..++++++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 6788999999999999888 6666 77 8999999999999778889999999999999999
Q ss_pred cCCC-CCc--cchhhhcc------c-hhccccCcCccCcCCC----CCCCCC------------Ccccchhhhccccccc
Q 017975 240 SSTK-VRG--LPQELKAL------V-LRMLHCGSNHWPIAEE----GNVLSD------------DAESLMKEIHCLEQLN 293 (363)
Q Consensus 240 ~~~~-l~~--lP~~i~~L------~-L~~L~~~~~~l~~lp~----~~l~~l------------~~~~~l~~l~~L~~L~ 293 (363)
++|. ++. +|..++.+ + |+.|+++.|.++.+|. .++.++ .+| .+..+++|+.|+
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 9997 885 89988887 6 9999999999888874 222222 333 556666667777
Q ss_pred eEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCccccccc--ccceeeeccCCCCCccccc
Q 017975 294 LIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANME--HLQLFSIWDSNLEDWNVDC 359 (363)
Q Consensus 294 l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~c~~l~~~~~~ 359 (363)
+.+|.+. ..+ ..+..+++ .|++|++++|... ..+..+..+. +|+.|++++|.+....|+.
T Consensus 360 L~~N~l~-~lp-~~l~~l~~---~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 360 LAYNQIT-EIP-ANFCGFTE---QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp CCSSEEE-ECC-TTSEEECT---TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred CCCCccc-ccc-Hhhhhhcc---cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 6666665 222 23444444 1377777776643 3344444433 7788888888777766654
No 34
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=1.6e-17 Score=167.63 Aligned_cols=134 Identities=21% Similarity=0.311 Sum_probs=65.7
Q ss_pred ccccceEEEeecccccc-cC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEE
Q 017975 160 EWEGVKRISLMENEIQS-LP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHL 237 (363)
Q Consensus 160 ~~~~l~~L~l~~~~~~~-l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 237 (363)
.+++++.|++++|.+.. +| .+..+++|++|++++|.+....+..+..+++|++|++++|.....+|..++.+++|++|
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence 33444455554444442 22 23444555555555555543333334555555555555553333455555555555555
Q ss_pred EccCCCCC-ccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccC
Q 017975 238 DLSSTKVR-GLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGS 302 (363)
Q Consensus 238 ~l~~~~l~-~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~ 302 (363)
++++|.+. .+|..++.++ |+.|+++.|.+.. ..|..+..+++|+.|++.+|.+.+.
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~---------~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG---------NIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE---------ECCGGGGGCTTCCEEECCSSEEESB
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccC---------cCCHHHcCCCCCCEEECCCCccCCc
Confidence 55555554 3455555555 5555555555441 2334555555555555555555433
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=4.5e-18 Score=152.89 Aligned_cols=180 Identities=17% Similarity=0.215 Sum_probs=120.4
Q ss_pred cccceEEEeecccccccCC-CCCCCCccEEEeccCCccccch-HHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEE
Q 017975 161 WEGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITE-SFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLD 238 (363)
Q Consensus 161 ~~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 238 (363)
++++++|++++|.+..++. +..+++|++|++++|.+..+++ ..+..+++|++|++++|......|..++.+++|++|+
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred ccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 4556666666665555542 4556666666666666666554 3366666666666666633334455566666677777
Q ss_pred ccCCCCCc--cchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchh
Q 017975 239 LSSTKVRG--LPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQ 315 (363)
Q Consensus 239 l~~~~l~~--lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~ 315 (363)
+++|.+.. +|..+..++ |+.|+++.|.++.++ |..+..+++|+.|++.+|.+.+..+ ..+..++++
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---------~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L- 225 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS---------PTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSL- 225 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC---------TTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTC-
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcCCcC---------HHHhcCCCCCCEEECCCCccCccCh-hhccCcccC-
Confidence 76666654 566666666 666666666665553 3667888999999999988876543 346666666
Q ss_pred hhhheeeecccCCCCcCCcccccc-cccceeeeccCCCCC
Q 017975 316 NITQALHIKDCNSLPLNLLHLANM-EHLQLFSIWDSNLED 354 (363)
Q Consensus 316 ~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~c~~l~ 354 (363)
+.|++++|......+..+..+ ++|+.|++++|+...
T Consensus 226 ---~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 226 ---QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp ---CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ---CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 999999987655556677777 489999999998753
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=1.2e-17 Score=164.21 Aligned_cols=200 Identities=18% Similarity=0.150 Sum_probs=161.5
Q ss_pred ceeEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975 142 EKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH 219 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~ 219 (363)
...+.+.+..++.+|... .+++++|++++|.++.++. +.++++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n- 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN- 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred CCceEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-
Confidence 345777888888887632 3789999999999998864 889999999999999999998877999999999999999
Q ss_pred Ccccc-CccccCCCCCCEEEccCCCCCccc-hhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEE
Q 017975 220 YLTEL-PVGISSLVSLHHLDLSSTKVRGLP-QELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIA 296 (363)
Q Consensus 220 ~~~~l-p~~i~~L~~L~~L~l~~~~l~~lP-~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~ 296 (363)
.++.+ |..++++++|++|++++|.+..+| ..++.+. |+.|+++.|.+..+. .|..++++++|+.|++.+
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK--------LPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC--------CCGGGGTCTTCCEEECCS
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee--------chHhHhhcCCCCEEEccC
Confidence 56555 889999999999999999999987 6789999 999999999886422 347899999999999999
Q ss_pred EEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975 297 LSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE 353 (363)
Q Consensus 297 ~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l 353 (363)
|.+.+..+ ..+..+.++...+.+|++++|.........+.. .+|+.|++++|...
T Consensus 163 n~l~~~~~-~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 163 NYIQTITV-NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNS 217 (606)
T ss_dssp SCCCEECT-TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSC
T ss_pred CcceecCh-hhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccc
Confidence 98876433 456666666554568999988753332333433 48999999998764
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=2.2e-17 Score=166.98 Aligned_cols=209 Identities=17% Similarity=0.191 Sum_probs=150.6
Q ss_pred ceeEEecCCCCCCCcc---ccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCC-CCEEEccc
Q 017975 142 EKFLVRAGVGLTDAPK---IEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPS-LRVLNLSV 217 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~~---~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~-L~~L~L~~ 217 (363)
-..+...+..+..+|. +..+++++.|++++|.+..+|.+..+++|+.|++++|.+..+|.. +.++++ |++|++++
T Consensus 550 L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPED-FCAFTDQVEGLGFSH 628 (876)
T ss_dssp CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTT-SCEECTTCCEEECCS
T ss_pred ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHH-HhhccccCCEEECcC
Confidence 3456666666666665 677788888888888888888888888888888888888877666 777777 88888888
Q ss_pred CCCccccCccccCCC-------------------------------CCCEEEccCCCCCccchhhh-ccc-hhccccCcC
Q 017975 218 NHYLTELPVGISSLV-------------------------------SLHHLDLSSTKVRGLPQELK-ALV-LRMLHCGSN 264 (363)
Q Consensus 218 ~~~~~~lp~~i~~L~-------------------------------~L~~L~l~~~~l~~lP~~i~-~L~-L~~L~~~~~ 264 (363)
| .++.+|..++.+. +|++|++++|.+..+|..+. .+. |+.|+++.|
T Consensus 629 N-~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 629 N-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp S-CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC
T ss_pred C-CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC
Confidence 8 5667776544332 56666666666666776654 566 888888888
Q ss_pred ccCcCCCC-------------CCCCC--------Ccccchh--hhccccccceEEEEeccCcccccccCCCchhhhhhee
Q 017975 265 HWPIAEEG-------------NVLSD--------DAESLMK--EIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQAL 321 (363)
Q Consensus 265 ~l~~lp~~-------------~l~~l--------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L 321 (363)
.+..+|.. ++..+ .+|..+. .+++|+.|++.+|.+.+ .| ..+..+++| +.|
T Consensus 708 ~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp-~~l~~L~~L----~~L 781 (876)
T 4ecn_A 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FP-TQPLNSSQL----KAF 781 (876)
T ss_dssp CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CC-CGGGGCTTC----CEE
T ss_pred cCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cc-hhhhcCCCC----CEE
Confidence 88877761 23222 4566665 78888888888888876 33 456666666 888
Q ss_pred eecccC------CCCcCCcccccccccceeeeccCCCCCccccc
Q 017975 322 HIKDCN------SLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC 359 (363)
Q Consensus 322 ~l~~~~------~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 359 (363)
++++|. .....+..+.++++|+.|++++|.+ +.+|..
T Consensus 782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 887633 3444566788889999999999888 667664
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=8.2e-17 Score=147.20 Aligned_cols=124 Identities=23% Similarity=0.374 Sum_probs=76.8
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 222 (363)
..+...+..+..++.+..++++++|++++|.++.++.+..+++|++|++++|.+..+++ +..+++|++|++++|....
T Consensus 69 ~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~ 146 (347)
T 4fmz_A 69 EYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS 146 (347)
T ss_dssp CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCC
T ss_pred cEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcc
Confidence 34445555555555566666677777777666666666666777777777776666655 5666666666666664444
Q ss_pred ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCC
Q 017975 223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAE 270 (363)
Q Consensus 223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp 270 (363)
.++ .++.+++|++|++++|.+..++. +..++ |+.|+++.|.+..++
T Consensus 147 ~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 147 DLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp CCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG
T ss_pred ccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc
Confidence 433 46666666666666666666554 55555 666666666665554
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=2.4e-17 Score=162.01 Aligned_cols=203 Identities=20% Similarity=0.203 Sum_probs=112.8
Q ss_pred EEecCCCCCCCccccccccceEEEeecccccccCCC---------------------CCCCCccEEEeccCCccccc--h
Q 017975 145 LVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQI---------------------PTCPRLQTLLLEYNHIEEIT--E 201 (363)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~---------------------~~l~~L~~L~l~~~~l~~~~--~ 201 (363)
+...+..+..++.+..+++++.|++.+|.+..+|.+ ..+++|++|++++|.++... +
T Consensus 290 L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 369 (606)
T 3vq2_A 290 MSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCS 369 (606)
T ss_dssp EEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECC
T ss_pred EEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchh
Confidence 344444445555555556666666666666555533 34455555555555555442 2
Q ss_pred HHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccch--hhhccc-hhccccCcCccCcCCC---CCCC
Q 017975 202 SFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEE---GNVL 275 (363)
Q Consensus 202 ~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~--~i~~L~-L~~L~~~~~~l~~lp~---~~l~ 275 (363)
..+..+++|++|++++| .+..+|..++.+++|++|++++|.+..++. .+..++ |+.|+++.|.+...+. .++.
T Consensus 370 ~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp HHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 33666667777777766 466666667777777777777776665532 556666 6676666666655332 1111
Q ss_pred CC-------------CcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCccccccccc
Q 017975 276 SD-------------DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHL 342 (363)
Q Consensus 276 ~l-------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L 342 (363)
++ ..|..+..+++|+.|++.+|.+.+..+ ..+..++++ ++|++++|......+..+.++++|
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L----~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GVFDTLHRL----QLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTC----CEEECCSSCCSCEEGGGTTTCTTC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh-hhhcccccC----CEEECCCCcCCCcCHHHccCCCcC
Confidence 11 123445555555555555555443322 334444444 666666655433334456666666
Q ss_pred ceeeeccCCCC
Q 017975 343 QLFSIWDSNLE 353 (363)
Q Consensus 343 ~~L~l~~c~~l 353 (363)
+.|++++|++.
T Consensus 524 ~~L~l~~N~l~ 534 (606)
T 3vq2_A 524 STLDCSFNRIE 534 (606)
T ss_dssp CEEECTTSCCC
T ss_pred CEEECCCCcCc
Confidence 66666666644
No 40
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=1.4e-17 Score=162.67 Aligned_cols=178 Identities=22% Similarity=0.302 Sum_probs=125.1
Q ss_pred CCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCC
Q 017975 153 TDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV 232 (363)
Q Consensus 153 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~ 232 (363)
..+.....+++++.|++.+|.+..++.+..+++|+.|++++|.+..+++ +..+++|++|+|++| .+..+| .++.++
T Consensus 34 ~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~ 109 (605)
T 1m9s_A 34 TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLK 109 (605)
T ss_dssp TSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCT
T ss_pred ccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCC
Confidence 3334455667777778877777777777777888888888887777766 677788888888887 566665 677778
Q ss_pred CCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCC
Q 017975 233 SLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKF 311 (363)
Q Consensus 233 ~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 311 (363)
+|++|+|++|.+..+| .+..+. |+.|+++.|.+..++ .+..+++|+.|++.+|.+.+..+ +..+
T Consensus 110 ~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-----------~l~~l~~L~~L~Ls~N~l~~~~~---l~~l 174 (605)
T 1m9s_A 110 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-----------VLSRLTKLDTLSLEDNQISDIVP---LAGL 174 (605)
T ss_dssp TCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-----------GGGSCTTCSEEECCSSCCCCCGG---GTTC
T ss_pred CCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCch-----------hhcccCCCCEEECcCCcCCCchh---hccC
Confidence 8888888888777764 466666 777777777766543 46667777777777777665443 5555
Q ss_pred CchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCc
Q 017975 312 PKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDW 355 (363)
Q Consensus 312 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~ 355 (363)
++| +.|+|++|... . ++.+..+++|+.|+|++|++...
T Consensus 175 ~~L----~~L~Ls~N~i~-~-l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 175 TKL----QNLYLSKNHIS-D-LRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TTC----CEEECCSSCCC-B-CGGGTTCTTCSEEECCSEEEECC
T ss_pred CCC----CEEECcCCCCC-C-ChHHccCCCCCEEEccCCcCcCC
Confidence 555 77777776532 2 24577777788888877776543
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=3.3e-17 Score=155.42 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=14.5
Q ss_pred CCCCccEEEeccCCccccchHHhcCCCCCCEEEcccC
Q 017975 182 TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN 218 (363)
Q Consensus 182 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~ 218 (363)
.+++|++|++++|.+..+++..++++++|++|++++|
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 113 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC
Confidence 3344444444444433333322334444444444443
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=1.2e-16 Score=146.02 Aligned_cols=199 Identities=20% Similarity=0.273 Sum_probs=146.9
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 222 (363)
..+...+..+..++.+..++++++|++++|.++.++.+..+++|++|++++|.++.++. +.++++|++|++++| .+.
T Consensus 47 ~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~ 123 (347)
T 4fmz_A 47 TKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NIS 123 (347)
T ss_dssp SEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCC
T ss_pred cEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-ccc
Confidence 45666777777778888889999999999999988888999999999999999888753 889999999999999 677
Q ss_pred ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCC----CCCCCC-------Ccccchhhhcccc
Q 017975 223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEE----GNVLSD-------DAESLMKEIHCLE 290 (363)
Q Consensus 223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~----~~l~~l-------~~~~~l~~l~~L~ 290 (363)
.+|. +..+++|++|++++|.....+..+..+. |+.|+++.+.+..++. .++..+ .....+..+++|+
T Consensus 124 ~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~ 202 (347)
T 4fmz_A 124 DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLH 202 (347)
T ss_dssp CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCC
T ss_pred Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccc
Confidence 7775 8999999999999995544445588888 9999999888877764 222222 1111255566666
Q ss_pred ccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975 291 QLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 291 ~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~ 354 (363)
.|++.+|.+.+..+ +..++++ ++|++++|..... ..+..+++|+.|++++|....
T Consensus 203 ~L~l~~n~l~~~~~---~~~~~~L----~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 203 YFTAYVNQITDITP---VANMTRL----NSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp EEECCSSCCCCCGG---GGGCTTC----CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred eeecccCCCCCCch---hhcCCcC----CEEEccCCccCCC--cchhcCCCCCEEECCCCccCC
Confidence 66666655544322 4444554 8888888764322 227788888999998887655
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=154.54 Aligned_cols=121 Identities=26% Similarity=0.354 Sum_probs=96.7
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 220 (363)
+.+...+..++.+|.... +++++|++++|.++.++ .+..+++|++|++++|.++.+++..|+++++|++|++++| .
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-K 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-C
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-c
Confidence 456667777777765333 78899999999888875 4788889999999999888887766888999999999998 6
Q ss_pred ccccCccccCCCCCCEEEccCCCCCc--cchhhhccc-hhccccCcCccC
Q 017975 221 LTELPVGISSLVSLHHLDLSSTKVRG--LPQELKALV-LRMLHCGSNHWP 267 (363)
Q Consensus 221 ~~~lp~~i~~L~~L~~L~l~~~~l~~--lP~~i~~L~-L~~L~~~~~~l~ 267 (363)
++.+|.. .+++|++|++++|.++. +|..++.++ |+.|+++.|.+.
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 7788866 78889999999988876 567888888 888877777664
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=6.3e-17 Score=154.49 Aligned_cols=197 Identities=16% Similarity=0.207 Sum_probs=122.3
Q ss_pred cccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCC
Q 017975 157 KIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSL 234 (363)
Q Consensus 157 ~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L 234 (363)
.+..+++++.|++++|.++.+|. +..+++|++|++++|.+..+++..+.++++|++|++++|......|..++.+++|
T Consensus 75 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154 (477)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence 34556677777777777777663 5677777777777777777666667777777777777773333345567777777
Q ss_pred CEEEccCCCCCccch-hhhccc-hhccccCcCccCcCCC---CCCCCC--------------------------------
Q 017975 235 HHLDLSSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEE---GNVLSD-------------------------------- 277 (363)
Q Consensus 235 ~~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l-------------------------------- 277 (363)
++|++++|.++.+|. .+..+. |+.|+++.|.+..++. .++.++
T Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence 777777777777764 356666 7777777766665553 111111
Q ss_pred ---Ccc-cchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975 278 ---DAE-SLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE 353 (363)
Q Consensus 278 ---~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l 353 (363)
..| ..+..+++|+.|++.+|.+.+.. ...+..++++ +.|++++|......+..+..+++|+.|++++|.+.
T Consensus 235 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIE-GSMLHELLRL----QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp CCCSCCHHHHTTCTTCCEEECCSSCCCEEC-TTSCTTCTTC----CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred cccccCHHHhcCccccCeeECCCCcCCccC-hhhccccccC----CEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 111 13444555555555555544322 2334444444 67777766544444556777788888888888766
Q ss_pred Ccccc
Q 017975 354 DWNVD 358 (363)
Q Consensus 354 ~~~~~ 358 (363)
...++
T Consensus 310 ~~~~~ 314 (477)
T 2id5_A 310 TLEES 314 (477)
T ss_dssp CCCGG
T ss_pred eeCHh
Confidence 55443
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.70 E-value=3.5e-17 Score=152.19 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=100.1
Q ss_pred cccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCC
Q 017975 159 EEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLH 235 (363)
Q Consensus 159 ~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~ 235 (363)
..+++++++++.++.++.+|. +..+++|++|++++|.+..+++..+..+++|++|++++| .++.+ |..++.+++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence 356899999999999999987 678999999999999999998877999999999999999 56655 55689999999
Q ss_pred EEEccCCCCCccchhh-hccc-hhccccCcCccCcCCC
Q 017975 236 HLDLSSTKVRGLPQEL-KALV-LRMLHCGSNHWPIAEE 271 (363)
Q Consensus 236 ~L~l~~~~l~~lP~~i-~~L~-L~~L~~~~~~l~~lp~ 271 (363)
+|++++|.++.+|..+ ..++ |+.|+++.|.+..++.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 158 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 158 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh
Confidence 9999999999999875 7888 9999999999988765
No 46
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.70 E-value=8.2e-18 Score=178.23 Aligned_cols=131 Identities=17% Similarity=0.243 Sum_probs=110.5
Q ss_pred CccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhcccccc-----ccchHHHHHHHHhhcCCCCChhhhHHHhHhcCC
Q 017975 1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKF-----EDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLF 75 (363)
Q Consensus 1 Iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~-----~~~~~~i~~~L~~sy~~L~~~~lk~cfl~~s~F 75 (363)
|+++|+|+||||+++|++|+.+. ..|+..++.+....+.. ....+.+..++.+||+.||+ ++|.||+|||+|
T Consensus 313 i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f 389 (1249)
T 3sfz_A 313 IIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSIL 389 (1249)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGS
T ss_pred HHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCcc
Confidence 57899999999999999999843 57999999987655431 11124799999999999999 899999999999
Q ss_pred CCCcccChHHHHHHHHHhCCccCcCHHHHHHHHHHhhcccCC-C---CceeechhHHHHHHHHhhhh
Q 017975 76 PEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEG-G---DHVKMHDMIRDMALWIANEI 138 (363)
Q Consensus 76 p~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~L~~rsli~~~-~---~~~~mhdl~~~~~~~i~~~~ 138 (363)
|+++.|+++.++.+|.+++. .++.++++|+++||++.. . ..|+|||++|++++....++
T Consensus 390 ~~~~~i~~~~~~~~~~~~~~----~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 390 QKDVKVPTKVLCVLWDLETE----EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CTTCCEEHHHHHHHHTCCHH----HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCCCeeCHHHHHHHhCCCHH----HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999999999999976642 288999999999999982 2 25999999999999886654
No 47
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=2.4e-17 Score=162.82 Aligned_cols=209 Identities=16% Similarity=0.170 Sum_probs=129.4
Q ss_pred eeEEecCCCCCCCcc---ccccccceEEEeeccccc-ccCCCCCCCCccEEEeccCCccccchHHhcCCCC-CCEEEccc
Q 017975 143 KFLVRAGVGLTDAPK---IEEWEGVKRISLMENEIQ-SLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPS-LRVLNLSV 217 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~---~~~~~~l~~L~l~~~~~~-~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~-L~~L~L~~ 217 (363)
..+...+..++.+|. +..+++++.|++++|.+. .+|.+..+++|++|++++|.+..+|.. +.++++ |++|++++
T Consensus 308 ~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAH 386 (636)
T ss_dssp CEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCS
T ss_pred CEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccC
Confidence 345555555555554 555666666666666666 555545555555555555555544444 444444 55555554
Q ss_pred C-------------------------CCccccCcccc-------CCCCCCEEEccCCCCCccchhhhc-cc-hhccccCc
Q 017975 218 N-------------------------HYLTELPVGIS-------SLVSLHHLDLSSTKVRGLPQELKA-LV-LRMLHCGS 263 (363)
Q Consensus 218 ~-------------------------~~~~~lp~~i~-------~L~~L~~L~l~~~~l~~lP~~i~~-L~-L~~L~~~~ 263 (363)
| ......|..++ .+.+|++|++++|.++.+|..+.. ++ |+.|+++.
T Consensus 387 N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred CcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 4 33333444444 555677777777777777766543 56 77777888
Q ss_pred CccCcCCCC-------------CCCCC--------Ccccchh--hhccccccceEEEEeccCcccccccCCCchhhhhhe
Q 017975 264 NHWPIAEEG-------------NVLSD--------DAESLMK--EIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQA 320 (363)
Q Consensus 264 ~~l~~lp~~-------------~l~~l--------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~ 320 (363)
|.++.+|.. ++..+ .+|..+. .+++|+.|++.+|.+.+ .| ..+..++++ +.
T Consensus 467 N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip-~~~~~l~~L----~~ 540 (636)
T 4eco_A 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FP-TQPLNSSTL----KG 540 (636)
T ss_dssp SCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CC-CGGGGCSSC----CE
T ss_pred CCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cC-hhhhcCCCC----CE
Confidence 887777751 33332 4556665 78888888888888776 33 456666666 88
Q ss_pred eeeccc------CCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975 321 LHIKDC------NSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC 359 (363)
Q Consensus 321 L~l~~~------~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 359 (363)
|++++| ......+..+.++++|+.|++++|.+ +.+|..
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 888543 33444566788888888888888888 666654
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.70 E-value=8.5e-17 Score=152.56 Aligned_cols=127 Identities=25% Similarity=0.284 Sum_probs=103.5
Q ss_pred ceeEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCcc-ccchHHhcCCCCCCEEEcccC
Q 017975 142 EKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIE-EITESFFQSLPSLRVLNLSVN 218 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~L~~~ 218 (363)
...+.+.+.+++.+|. -.+++++|++++|.++.++ .+..+++|++|++++|.+. .+++..|.++++|++|++++|
T Consensus 12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 3456677778888887 3378999999999999873 4789999999999999886 666767999999999999999
Q ss_pred CCccccCccccCCCCCCEEEccCCCCCc-cchh--hhccc-hhccccCcCccCcCC
Q 017975 219 HYLTELPVGISSLVSLHHLDLSSTKVRG-LPQE--LKALV-LRMLHCGSNHWPIAE 270 (363)
Q Consensus 219 ~~~~~lp~~i~~L~~L~~L~l~~~~l~~-lP~~--i~~L~-L~~L~~~~~~l~~lp 270 (363)
......|..++++++|++|++++|.++. +|.. +..++ |+.|+++.|.+..++
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 145 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC
Confidence 5444458889999999999999998886 4444 77777 888888888877663
No 49
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=2.7e-17 Score=142.47 Aligned_cols=190 Identities=15% Similarity=0.186 Sum_probs=151.4
Q ss_pred eeEEecCCCCCCCcc--ccccccceEEEeeccc-ccccC--CCCCCCCccEEEecc-CCccccchHHhcCCCCCCEEEcc
Q 017975 143 KFLVRAGVGLTDAPK--IEEWEGVKRISLMENE-IQSLP--QIPTCPRLQTLLLEY-NHIEEITESFFQSLPSLRVLNLS 216 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~-~~~l~--~~~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L~ 216 (363)
..+...+..++.++. +..+++++.|++++|. ++.++ .+..+++|++|++++ |.++.+++..|.++++|++|+++
T Consensus 34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113 (239)
T ss_dssp CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence 355556666666553 6678999999999997 88887 477999999999999 99999998779999999999999
Q ss_pred cCCCccccCccccCCCCCC---EEEccCC-CCCccchh-hhccc-hh-ccccCcCccCcCCCCCCCCCCcccchhhhccc
Q 017975 217 VNHYLTELPVGISSLVSLH---HLDLSST-KVRGLPQE-LKALV-LR-MLHCGSNHWPIAEEGNVLSDDAESLMKEIHCL 289 (363)
Q Consensus 217 ~~~~~~~lp~~i~~L~~L~---~L~l~~~-~l~~lP~~-i~~L~-L~-~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L 289 (363)
+| .++.+|. ++.+++|+ +|++++| .++.+|.. +..+. |+ .|+++.|.++.+|. .....++|
T Consensus 114 ~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~----------~~~~~~~L 181 (239)
T 2xwt_C 114 NT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG----------YAFNGTKL 181 (239)
T ss_dssp EE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT----------TTTTTCEE
T ss_pred CC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH----------hhcCCCCC
Confidence 99 7888996 99999998 9999999 99999864 78888 99 99999999988873 22233789
Q ss_pred cccceEEEE-eccCcccccccCC-CchhhhhheeeecccCCCCcCCcccccccccceeeeccCCC
Q 017975 290 EQLNLIALS-LRGSRGVENFLKF-PKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNL 352 (363)
Q Consensus 290 ~~L~l~~~~-~~~~~~~~~l~~l-~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 352 (363)
+.|++.+|. +.. .+...+..+ +++ +.|++++|.-... +.. .+++|+.|++++|..
T Consensus 182 ~~L~L~~n~~l~~-i~~~~~~~l~~~L----~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 182 DAVYLNKNKYLTV-IDKDAFGGVYSGP----SLLDVSQTSVTAL-PSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp EEEECTTCTTCCE-ECTTTTTTCSBCC----SEEECTTCCCCCC-CCT--TCTTCSEEECTTC--
T ss_pred CEEEcCCCCCccc-CCHHHhhccccCC----cEEECCCCccccC-Chh--HhccCceeeccCccC
Confidence 999999884 653 333556666 666 9999999764322 222 678999999998864
No 50
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.70 E-value=8.2e-17 Score=158.23 Aligned_cols=212 Identities=21% Similarity=0.250 Sum_probs=157.5
Q ss_pred eEEecCCCCCCCcc--ccccccceEEEeecccccccC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975 144 FLVRAGVGLTDAPK--IEEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220 (363)
Q Consensus 144 ~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 220 (363)
.+...+..+..++. +..+++++.|++++|.++.+| .+..+++|++|++++|.+..+++..+.++++|++|++++|..
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 34445555555543 567789999999999998887 478889999999999999888776688999999999999955
Q ss_pred ccccCcc-ccCCCCCCEEEccCCCCCcc---chhhhccc-hhccccCcCccCcCCC---CCCCCC------------C-c
Q 017975 221 LTELPVG-ISSLVSLHHLDLSSTKVRGL---PQELKALV-LRMLHCGSNHWPIAEE---GNVLSD------------D-A 279 (363)
Q Consensus 221 ~~~lp~~-i~~L~~L~~L~l~~~~l~~l---P~~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l------------~-~ 279 (363)
...+|.. ++.+++|++|++++|.+..+ |..+..++ |+.|+++.|.+..++. .++.++ . .
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 5566654 88899999999999988876 56788888 9999998888776654 222222 1 2
Q ss_pred ccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCC---cCCcccccccccceeeeccCCCCCcc
Q 017975 280 ESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLP---LNLLHLANMEHLQLFSIWDSNLEDWN 356 (363)
Q Consensus 280 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~l~~c~~l~~~ 356 (363)
+..+..+++|+.|++.+|.+.+..+ ..+..++++ ++|++++|.... ..+..+..+++|+.|++++|.+.+..
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSE-QLFDGLPAL----QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCT-TTTTTCTTC----CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred chhhhCcccCCEEECCCCccCCcCH-HHHhCCCCC----CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 2336778888888888887765443 456666666 889998887422 22356888899999999999888776
Q ss_pred cccc
Q 017975 357 VDCA 360 (363)
Q Consensus 357 ~~~~ 360 (363)
|+..
T Consensus 493 ~~~~ 496 (606)
T 3t6q_A 493 QHAF 496 (606)
T ss_dssp TTTT
T ss_pred hhhh
Confidence 6543
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=2.1e-16 Score=153.94 Aligned_cols=123 Identities=29% Similarity=0.341 Sum_probs=106.3
Q ss_pred ceeEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975 142 EKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH 219 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~ 219 (363)
...+.+.+..++.+|... .+++++|++++|.++.++ .+..+++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N- 110 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN- 110 (562)
T ss_dssp CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred CcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-
Confidence 367778888888877532 378999999999999886 5889999999999999999998877999999999999999
Q ss_pred CccccCccccCCCCCCEEEccCCCCCccc--hhhhccc-hhccccCcCccCc
Q 017975 220 YLTELPVGISSLVSLHHLDLSSTKVRGLP--QELKALV-LRMLHCGSNHWPI 268 (363)
Q Consensus 220 ~~~~lp~~i~~L~~L~~L~l~~~~l~~lP--~~i~~L~-L~~L~~~~~~l~~ 268 (363)
.++.+|.. .+++|++|++++|.+..+| ..++.++ |+.|+++.|.++.
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 78899977 8999999999999998864 7889988 9999888888764
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.69 E-value=4e-17 Score=158.49 Aligned_cols=194 Identities=24% Similarity=0.305 Sum_probs=139.4
Q ss_pred EEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975 145 LVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222 (363)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 222 (363)
....+..++.+|... .+++++|++++|.++.++ .+..+++|++|++++|.++.+++..|.++++|++|++++| .++
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~ 87 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLS 87 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCC
T ss_pred EECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccC
Confidence 444556667776532 378999999999998874 4789999999999999999988877999999999999999 566
Q ss_pred ccCcc-ccCCCCCCEEEccCCCCCc--cchhhhccc-hhccccCcCc-cCcCCCCCCCCCCcccchhhhccccccceEEE
Q 017975 223 ELPVG-ISSLVSLHHLDLSSTKVRG--LPQELKALV-LRMLHCGSNH-WPIAEEGNVLSDDAESLMKEIHCLEQLNLIAL 297 (363)
Q Consensus 223 ~lp~~-i~~L~~L~~L~l~~~~l~~--lP~~i~~L~-L~~L~~~~~~-l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~ 297 (363)
.+|.. ++++++|++|++++|.++. .|..++.++ |+.|+++.|. +..+|. ..+..+++|+.|++.+|
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~---------~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR---------IDFAGLTSLNELEIKAL 158 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT---------TTTTTCCEEEEEEEEET
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH---------hhhhcccccCeeeccCC
Confidence 66654 9999999999999999985 467888888 9999998887 566652 45667777888887777
Q ss_pred EeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975 298 SLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 298 ~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~ 354 (363)
.+.+..+ ..+..++++ +.|++++|.........+..+++|+.|++++|...+
T Consensus 159 ~l~~~~~-~~l~~l~~L----~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 159 SLRNYQS-QSLKSIRDI----HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TCCEECT-TTTTTCSEE----EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cccccCh-hhhhccccC----ceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 7665433 445555554 666666554321111112345566666666665544
No 53
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=161.77 Aligned_cols=204 Identities=15% Similarity=0.161 Sum_probs=160.0
Q ss_pred ceeEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccC-CccccchHHhcCCCCCCEEEcccC
Q 017975 142 EKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYN-HIEEITESFFQSLPSLRVLNLSVN 218 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~ 218 (363)
...+.+.+..++.+|. -.+++++|++++|.++.++ .+.++++|++|++++| .+..+++..|+++++|++|+|++|
T Consensus 6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 4567788888898887 5589999999999998874 5889999999999999 455676777999999999999999
Q ss_pred CCccccCccccCCCCCCEEEccCCCCCc-cchh--hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccce
Q 017975 219 HYLTELPVGISSLVSLHHLDLSSTKVRG-LPQE--LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNL 294 (363)
Q Consensus 219 ~~~~~lp~~i~~L~~L~~L~l~~~~l~~-lP~~--i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l 294 (363)
......|..++++++|++|++++|.+.. +|.. +..++ |+.|+++.|.+..++ .+..++++++|+.|++
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~--------~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY--------LHPSFGKLNSLKSIDF 155 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC--------CCGGGGTCSSCCEEEE
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc--------cchhHhhCCCCCEEEC
Confidence 4444458999999999999999999986 5665 88898 999999999987664 2357889999999999
Q ss_pred EEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCccccccc------ccceeeeccCCCCCcccc
Q 017975 295 IALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANME------HLQLFSIWDSNLEDWNVD 358 (363)
Q Consensus 295 ~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~------~L~~L~l~~c~~l~~~~~ 358 (363)
.+|.+.+..+ ..+..+.. ..|+.|++++|......+..+..+. +|+.|++++|......|.
T Consensus 156 s~N~i~~~~~-~~l~~l~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 222 (844)
T 3j0a_A 156 SSNQIFLVCE-HELEPLQG--KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222 (844)
T ss_dssp ESSCCCCCCS-GGGHHHHH--CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred CCCcCCeeCH-HHcccccC--CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH
Confidence 9988876544 34444411 2349999999875444344444444 399999999977655554
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.69 E-value=2.2e-16 Score=150.35 Aligned_cols=126 Identities=21% Similarity=0.331 Sum_probs=53.7
Q ss_pred ccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017975 160 EWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDL 239 (363)
Q Consensus 160 ~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 239 (363)
.++++++|++++|.+..++.+..+++|+.|++++|.+..++. +..+++|++|++++| .+..++. ++.+++|++|++
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l 272 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKL 272 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEEC
T ss_pred cCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchh--hhcCCCCCEEECCCC-ccccchh-hhcCCCCCEEEC
Confidence 333444444444433333333334444444444444433321 344444444444444 3333332 444444444444
Q ss_pred cCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975 240 SSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG 301 (363)
Q Consensus 240 ~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~ 301 (363)
++|.+..+|. +..++ |+.|+++.|.++.++. +..+++|+.|++.+|.+.+
T Consensus 273 ~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-----------~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 273 GANQISNISP-LAGLTALTNLELNENQLEDISP-----------ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-----------GGGCTTCSEEECCSSCCSC
T ss_pred CCCccCcccc-ccCCCccCeEEcCCCcccCchh-----------hcCCCCCCEEECcCCcCCC
Confidence 4444444433 33333 4444444444444331 4445555555555554443
No 55
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=1.8e-16 Score=138.37 Aligned_cols=178 Identities=21% Similarity=0.297 Sum_probs=146.8
Q ss_pred ccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEcc
Q 017975 162 EGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLS 240 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~ 240 (363)
...+.++++++.++.+|.... ++++.|++++|.+..+++..+.++++|++|++++| .++.+ |..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence 456789999999998885322 68999999999999998877999999999999999 55554 4558999999999999
Q ss_pred CCCCCccch-hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhh
Q 017975 241 STKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNIT 318 (363)
Q Consensus 241 ~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L 318 (363)
+|.++.+|. .+..+. |+.|+++.|.++.+|. ..+..+++|+.|++.+|.+.+..+ ..+..++++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L---- 157 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS---------GVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNL---- 157 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC----
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcCh---------hHhccCCcccEEECcCCcCCccCH-HHcCcCcCC----
Confidence 999999875 457788 9999999999988873 456788999999999998875443 556777776
Q ss_pred heeeecccCCCCcCCcccccccccceeeeccCCCCCc
Q 017975 319 QALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDW 355 (363)
Q Consensus 319 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~ 355 (363)
+.|++++|......+..+..+++|+.|++++|+....
T Consensus 158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999999876555455788999999999999997654
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=146.30 Aligned_cols=179 Identities=22% Similarity=0.214 Sum_probs=148.2
Q ss_pred ccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEcc
Q 017975 162 EGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLS 240 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~ 240 (363)
+.....+.+++.++.+|.- -.++|++|++++|.++.+++..+.++++|++|++++| .++.+ |..++++++|++|+++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp CTTSEEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CCCeEeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECC
Confidence 4444578888999998862 2368999999999999999877999999999999999 56665 5679999999999999
Q ss_pred CCCCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhh
Q 017975 241 STKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNIT 318 (363)
Q Consensus 241 ~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L 318 (363)
+|.++.+|.. +..++ |+.|+++.|.++.+|. ...+..+++|+.|++.+|......+...+..++++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L---- 176 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE--------TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL---- 176 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS--------SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE----
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCc--------hhhhccCCCCcEEECCCCccccccCHHHccCCCCC----
Confidence 9999999886 78888 9999999999988871 12577899999999999854444444667777777
Q ss_pred heeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975 319 QALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 319 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~ 354 (363)
++|++++|......+..+..+++|+.|++++|....
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 999999988655556789999999999999998643
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=7.2e-17 Score=158.36 Aligned_cols=111 Identities=21% Similarity=0.292 Sum_probs=99.1
Q ss_pred ccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCE
Q 017975 160 EWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHH 236 (363)
Q Consensus 160 ~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~ 236 (363)
.+.+++.+++.++.+..+|. +..+++|++|++++|.+..+++..|+.+++|++|+|++| .++.+| ..++.+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCE
Confidence 45789999999999999986 678999999999999999998877999999999999999 566655 45799999999
Q ss_pred EEccCCCCCccchhh-hccc-hhccccCcCccCcCCC
Q 017975 237 LDLSSTKVRGLPQEL-KALV-LRMLHCGSNHWPIAEE 271 (363)
Q Consensus 237 L~l~~~~l~~lP~~i-~~L~-L~~L~~~~~~l~~lp~ 271 (363)
|++++|.+..+|..+ +.+. |+.|+++.|.+..+++
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 164 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence 999999999999875 7888 9999999999988875
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.68 E-value=1.5e-16 Score=158.45 Aligned_cols=212 Identities=19% Similarity=0.205 Sum_probs=133.5
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 221 (363)
.+.+.+..++.+|... .+++++|++++|.++.++. +..+++|++|++++|.+..+++..++++++|++|++++| .+
T Consensus 8 ~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 85 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-EL 85 (680)
T ss_dssp EEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CC
T ss_pred eeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-cc
Confidence 4556666666666422 2678888888888777663 677788888888888877777766778888888888887 66
Q ss_pred cccCc-cccCCCCCCEEEccCCCCCccc-hhhhccc-hhccccCcCccCcCCC---CCCCCC------------Ccccch
Q 017975 222 TELPV-GISSLVSLHHLDLSSTKVRGLP-QELKALV-LRMLHCGSNHWPIAEE---GNVLSD------------DAESLM 283 (363)
Q Consensus 222 ~~lp~-~i~~L~~L~~L~l~~~~l~~lP-~~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l------------~~~~~l 283 (363)
+.+|. .++++++|++|++++|.+..+| ..++.++ |+.|+++.|.+...+. .++.++ ..+..+
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHh
Confidence 66665 4778888888888888777775 4577777 7777777777766543 222222 111112
Q ss_pred h--hhccccccceEEEEeccCcccccccCCCch-----------------------------------------------
Q 017975 284 K--EIHCLEQLNLIALSLRGSRGVENFLKFPKL----------------------------------------------- 314 (363)
Q Consensus 284 ~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l----------------------------------------------- 314 (363)
. .+++|+.|++.+|.+.+..+ ..+..+.++
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred hccccccccEEECCCCcccccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence 1 33567777776665544322 222221111
Q ss_pred -h-hhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975 315 -Q-NITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD 358 (363)
Q Consensus 315 -~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 358 (363)
. ..|+.|++++|......+..+..+++|++|++++|...+..|.
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh
Confidence 1 1146666666654333344567777777777777776665554
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.68 E-value=1.8e-16 Score=156.23 Aligned_cols=126 Identities=25% Similarity=0.275 Sum_probs=88.5
Q ss_pred eeEEecCCCCCCCc--cccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccC
Q 017975 143 KFLVRAGVGLTDAP--KIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN 218 (363)
Q Consensus 143 ~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~ 218 (363)
..+...++.++.++ .+..++++++|++++|.++.++. +.++++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence 34555555555554 35566777888887777777753 667778888888888777777776777888888888877
Q ss_pred CCccccCc-cccCCCCCCEEEccCCCCCc--cchhhhccc-hhccccCcCccCcC
Q 017975 219 HYLTELPV-GISSLVSLHHLDLSSTKVRG--LPQELKALV-LRMLHCGSNHWPIA 269 (363)
Q Consensus 219 ~~~~~lp~-~i~~L~~L~~L~l~~~~l~~--lP~~i~~L~-L~~L~~~~~~l~~l 269 (363)
.++.+|. .++++++|++|++++|.++. +|..++.+. |+.|+++.|.++.+
T Consensus 135 -~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 135 -NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp -CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred -cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 5666654 47778888888888877764 466677777 77777776665543
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.68 E-value=1.3e-16 Score=157.33 Aligned_cols=173 Identities=21% Similarity=0.222 Sum_probs=140.8
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 221 (363)
.+.+.+.+++.+|.-- .+++++|++++|.++.++ .|.++++|++|++++|.++.++++.|.++++|++|+|++| .+
T Consensus 35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l 112 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PI 112 (635)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CC
T ss_pred EEECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cC
Confidence 4556777788777522 258999999999999987 4889999999999999999999988999999999999999 78
Q ss_pred cccCc-cccCCCCCCEEEccCCCCCccch-hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEE
Q 017975 222 TELPV-GISSLVSLHHLDLSSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALS 298 (363)
Q Consensus 222 ~~lp~-~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~ 298 (363)
+.+|. .++++++|++|++++|+++.+|. .++.++ |+.|+++.|.++.++ .|..+..+++|+.|++.+|.
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~--------~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--------LPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC--------CCGGGGGCTTCCEEECCSSC
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCC--------CchhhccchhhhhhcccCcc
Confidence 88875 58999999999999999999986 588999 999999999987653 45778889999999999988
Q ss_pred eccCcccccccCCCchhhhhheeeecccC
Q 017975 299 LRGSRGVENFLKFPKLQNITQALHIKDCN 327 (363)
Q Consensus 299 ~~~~~~~~~l~~l~~l~~~L~~L~l~~~~ 327 (363)
+.+..+ ..+..+.++......++++.+.
T Consensus 185 l~~~~~-~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 185 IQSIYC-TDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp CCEECG-GGGHHHHTCTTCCCEEECTTCC
T ss_pred cccccc-ccccchhhhhhhhhhhhcccCc
Confidence 775543 4455555444444556666554
No 61
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=7.2e-16 Score=146.18 Aligned_cols=112 Identities=24% Similarity=0.312 Sum_probs=71.2
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccc
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 223 (363)
.+...+..+..++.+..++++++|++++|.++.++ +..+++|++|++++|.++.++ ++++++|++|++++| .++.
T Consensus 46 ~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~ 120 (457)
T 3bz5_A 46 SLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTK 120 (457)
T ss_dssp EEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSC
T ss_pred EEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCe
Confidence 44555555555566666677777777777776664 666777777777777766653 566777777777777 5555
Q ss_pred cCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcC
Q 017975 224 LPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSN 264 (363)
Q Consensus 224 lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~ 264 (363)
+| ++.+++|++|++++|.++.+| ++.++ |+.|+++.|
T Consensus 121 l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 121 LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLN 158 (457)
T ss_dssp CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTC
T ss_pred ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCC
Confidence 54 666777777777777666654 44444 444444444
No 62
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=2.4e-16 Score=133.50 Aligned_cols=184 Identities=21% Similarity=0.249 Sum_probs=133.8
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 221 (363)
.+.+.+.+++.+|.. ..+++++|++++|.++.++. +..+++|++|++++|.++.+++..+..+++|++|++++| .+
T Consensus 11 ~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QL 88 (208)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cC
Confidence 344555555555532 23588999999998888765 678899999999999998888877788999999999999 66
Q ss_pred cccCcc-ccCCCCCCEEEccCCCCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEE
Q 017975 222 TELPVG-ISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALS 298 (363)
Q Consensus 222 ~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~ 298 (363)
+.+|.. ++.+++|++|++++|.++.+|.. +..+. |+.|+++.|.++.+|. ..+..+++|+.|++.+|.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---------~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD---------GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---------TTTTTCTTCCEEECCSCC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH---------HHhccCCCccEEEecCCC
Confidence 666654 68899999999999999888765 57777 8888898888887763 446778888888888886
Q ss_pred eccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975 299 LRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 299 ~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~ 354 (363)
+.+. .+++ +.|+++.+......+..++.++. ++..|....
T Consensus 160 ~~~~--------~~~l----~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~ 199 (208)
T 2o6s_A 160 WDCT--------CPGI----RYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSG 199 (208)
T ss_dssp BCCC--------TTTT----HHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTC
T ss_pred eecC--------CCCH----HHHHHHHHhCCceeeccCccccC----CccccccCC
Confidence 5532 3344 67777766644343445555544 455555433
No 63
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.67 E-value=3.2e-16 Score=149.19 Aligned_cols=188 Identities=16% Similarity=0.260 Sum_probs=158.9
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 222 (363)
..+...+..+...+.+..+++++.|++++|.++.++.+..+++|++|++++|.+...++ +..+++|++|++++| .+.
T Consensus 202 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~ 278 (466)
T 1o6v_A 202 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN-QIS 278 (466)
T ss_dssp SEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS-CCC
T ss_pred CEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCC-ccC
Confidence 34555666666666677889999999999999999889999999999999999998877 899999999999999 677
Q ss_pred ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975 223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG 301 (363)
Q Consensus 223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~ 301 (363)
.+|. ++.+++|++|++++|.+..+|. +..+. |+.|+++.|.+..++ + +..+++|+.|++.+|.+.+
T Consensus 279 ~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~----------~-~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 279 NISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDIS----------P-VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp CCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCG----------G-GGGCTTCCEEECCSSCCCC
T ss_pred cccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCch----------h-hccCccCCEeECCCCccCC
Confidence 7775 9999999999999999999876 77888 999999999987765 2 6789999999999998776
Q ss_pred CcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCc
Q 017975 302 SRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDW 355 (363)
Q Consensus 302 ~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~ 355 (363)
. ..+..++++ +.|++++|..... ++ +..+++|+.|++++|+....
T Consensus 346 ~---~~l~~l~~L----~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 346 V---SSLANLTNI----NWLSAGHNQISDL-TP-LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp C---GGGTTCTTC----CEEECCSSCCCBC-GG-GTTCTTCCEEECCCEEEECC
T ss_pred c---hhhccCCCC----CEEeCCCCccCcc-ch-hhcCCCCCEEeccCCcccCC
Confidence 5 356667766 9999999875333 22 88999999999999988764
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=155.44 Aligned_cols=197 Identities=19% Similarity=0.185 Sum_probs=156.4
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 220 (363)
..+.+.+.+++.+|.. -.+.+++|++++|.++.++ .+..+++|++|++++|.+..+++..|.++++|++|++++| .
T Consensus 10 ~~~~c~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~ 87 (570)
T 2z63_A 10 ITYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-P 87 (570)
T ss_dssp TEEECCSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred cEEEeCCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-c
Confidence 4567777777777752 2368999999999999876 5789999999999999999998888999999999999999 5
Q ss_pred ccccC-ccccCCCCCCEEEccCCCCCccch-hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEE
Q 017975 221 LTELP-VGISSLVSLHHLDLSSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIAL 297 (363)
Q Consensus 221 ~~~lp-~~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~ 297 (363)
++.+| ..++++++|++|++++|.++.+|. .++.++ |+.|+++.|.+..++ .|..+.++++|+.|++.+|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~--------lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--------LPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC--------CCGGGGGCTTCCEEECTTS
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceec--------ChhhhcccCCCCEEeCcCC
Confidence 66654 789999999999999999999876 688888 999999999887532 3478899999999999988
Q ss_pred EeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCC
Q 017975 298 SLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSN 351 (363)
Q Consensus 298 ~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 351 (363)
.+.+..+ ..+..+.+++...+.|++++|......+..+..+ +|+.|++++|.
T Consensus 160 ~l~~~~~-~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 160 KIQSIYC-TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNF 211 (570)
T ss_dssp CCCEECG-GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred ccceecH-HHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEeccccc
Confidence 8765433 4455555554434678888877544434455554 78999988874
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.67 E-value=2.6e-16 Score=149.20 Aligned_cols=187 Identities=16% Similarity=0.158 Sum_probs=136.0
Q ss_pred CccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCC
Q 017975 155 APKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSL 234 (363)
Q Consensus 155 ~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L 234 (363)
...+..++++++|++++|.++.+|.+..+++|++|++++|.++.++ ++.+++|++|++++| .++.+| ++.+++|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKL 108 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTC
T ss_pred ccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcC
Confidence 4456778999999999999999999999999999999999999974 789999999999999 677776 9999999
Q ss_pred CEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCC---Cc-------ccchhhhccccccceEEEEeccCc
Q 017975 235 HHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSD---DA-------ESLMKEIHCLEQLNLIALSLRGSR 303 (363)
Q Consensus 235 ~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l---~~-------~~~l~~l~~L~~L~l~~~~~~~~~ 303 (363)
++|++++|.++.+| ++.++ |+.|+++.|.++.++-+++..+ .. .-.+..+++|+.|++.+|.+.+.
T Consensus 109 ~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l- 185 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL- 185 (457)
T ss_dssp CEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC-
T ss_pred CEEECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee-
Confidence 99999999999987 88888 9999999999988764333222 10 01355667777777777666542
Q ss_pred ccccccCCCch-----------------hhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcc
Q 017975 304 GVENFLKFPKL-----------------QNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWN 356 (363)
Q Consensus 304 ~~~~l~~l~~l-----------------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~ 356 (363)
+ +..++++ ...|+.|++++|..... + +..+++|+.|++++|.+.+..
T Consensus 186 ~---l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i--p-~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 186 D---VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI--D-VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp C---CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC--C-CTTCTTCSEEECCSSCCSCCC
T ss_pred c---cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCccccc--C-ccccCCCCEEEeeCCcCCCcC
Confidence 1 2233322 01125555555443221 1 555666666666666655443
No 66
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=1.2e-16 Score=135.23 Aligned_cols=174 Identities=24% Similarity=0.332 Sum_probs=143.8
Q ss_pred eEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcc-ccCCCCCCEEEccCCC
Q 017975 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTK 243 (363)
Q Consensus 165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~ 243 (363)
+.++..++.++.+|. .-.++|++|++++|.++.+++..+..+++|++|++++| .++.+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc
Confidence 467777788888774 23568999999999999999887899999999999999 67777654 6899999999999999
Q ss_pred CCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhhee
Q 017975 244 VRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQAL 321 (363)
Q Consensus 244 l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L 321 (363)
++.+|.. +..+. |+.|+++.|.++.+|. ..+..+++|+.|++.+|.+.+..+ ..+..++++ +.|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L----~~L 153 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPD---------GVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSL----QYI 153 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTC----CEE
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCH---------hHhccCCcCCEEECCCCccceeCH-HHhccCCCc----cEE
Confidence 9998875 57888 9999999999988873 457889999999999998875433 456667776 999
Q ss_pred eecccCCCCcCCcccccccccceeeeccCCCCCccccccC
Q 017975 322 HIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAG 361 (363)
Q Consensus 322 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~ 361 (363)
++++|.. ...+++|+.|++++|...+.+|+..|
T Consensus 154 ~l~~N~~-------~~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 154 WLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp ECCSCCB-------CCCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred EecCCCe-------ecCCCCHHHHHHHHHhCCceeeccCc
Confidence 9999753 24567899999999999999987654
No 67
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.67 E-value=4.4e-16 Score=141.59 Aligned_cols=186 Identities=18% Similarity=0.205 Sum_probs=131.4
Q ss_pred ccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEcc
Q 017975 162 EGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLS 240 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~ 240 (363)
.+++.++++++.++.+|... .+++++|++++|.+..+++..+.++++|++|++++| .++.+ |..++++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence 36899999999999888633 479999999999999998877999999999999999 56655 7889999999999999
Q ss_pred CCCCCccchhhhccc-hhccccCcCccCcCCC---CCCCCC--------------CcccchhhhccccccceE-------
Q 017975 241 STKVRGLPQELKALV-LRMLHCGSNHWPIAEE---GNVLSD--------------DAESLMKEIHCLEQLNLI------- 295 (363)
Q Consensus 241 ~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l--------------~~~~~l~~l~~L~~L~l~------- 295 (363)
+|.++.+|..+. . |+.|+++.|.++.+|. .++.++ ..+..+..+ +|+.|++.
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 999999998776 5 9999999999988875 222222 112223333 34444443
Q ss_pred --------------EEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975 296 --------------ALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD 358 (363)
Q Consensus 296 --------------~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 358 (363)
+|.+.+..+ ..+..++++ +.|++++|......+..+..+++|+.|++++|.+. .+|.
T Consensus 188 ~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 258 (332)
T 2ft3_A 188 PKDLPETLNELHLDHNKIQAIEL-EDLLRYSKL----YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258 (332)
T ss_dssp CSSSCSSCSCCBCCSSCCCCCCT-TSSTTCTTC----SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT
T ss_pred CccccCCCCEEECCCCcCCccCH-HHhcCCCCC----CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecCh
Confidence 333332211 233444444 67777766543333445677777777777777665 3443
No 68
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.67 E-value=3.9e-16 Score=153.41 Aligned_cols=209 Identities=20% Similarity=0.249 Sum_probs=122.7
Q ss_pred eEEecCCCCCCC--ccccccccceEEEeeccccccc--CCCCCCCCccEEEeccCCccccchHHhcCCCCCC--EEEccc
Q 017975 144 FLVRAGVGLTDA--PKIEEWEGVKRISLMENEIQSL--PQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR--VLNLSV 217 (363)
Q Consensus 144 ~~~~~~~~~~~~--~~~~~~~~l~~L~l~~~~~~~l--~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~--~L~L~~ 217 (363)
.+...+..+..+ ..+..++++++|++++|.+..+ |.+..+++|++|++++|.+..+++..++.+++|+ .|++++
T Consensus 109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred EeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence 444455555543 3355667788888888877765 5566678888888888888777776677777777 667766
Q ss_pred CCCccccC------------------------------------------------------------------------
Q 017975 218 NHYLTELP------------------------------------------------------------------------ 225 (363)
Q Consensus 218 ~~~~~~lp------------------------------------------------------------------------ 225 (363)
| .+..++
T Consensus 189 n-~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 189 N-DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp C-CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred C-ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 6 222222
Q ss_pred ----ccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCC------CCCCCC---------Ccc-cchh
Q 017975 226 ----VGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEE------GNVLSD---------DAE-SLMK 284 (363)
Q Consensus 226 ----~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~------~~l~~l---------~~~-~~l~ 284 (363)
..++.+++|++|++++|.++.+|..+..++ |+.|+++.|.+..++. .++..+ ..+ ..+.
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 125556666666666666666666666666 6666666666655532 111111 111 1245
Q ss_pred hhccccccceEEEEeccCcc-cccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccc
Q 017975 285 EIHCLEQLNLIALSLRGSRG-VENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNV 357 (363)
Q Consensus 285 ~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~ 357 (363)
.+++|+.|++.+|.+.+... ...+..++++ ++|++++|......+..+..+++|+.|++++|......|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHL----QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTC----CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCC----CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 55555555555555443321 1234444444 666666665433334556666777777777776655443
No 69
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=8.6e-17 Score=162.67 Aligned_cols=193 Identities=13% Similarity=0.138 Sum_probs=135.5
Q ss_pred cccccccceEEEeecccccc------------------cCC-CC--CCCCccEEEeccCCccccchHHhcCCCCCCEEEc
Q 017975 157 KIEEWEGVKRISLMENEIQS------------------LPQ-IP--TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNL 215 (363)
Q Consensus 157 ~~~~~~~l~~L~l~~~~~~~------------------l~~-~~--~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L 215 (363)
.+..+++++.|++++|.++. +|. +. ++++|++|++++|.+....|..++++++|++|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 46778899999999999887 774 44 7899999999999876554555889999999999
Q ss_pred ccCCCcc--ccCccccCCC-------CCCEEEccCCCCCccch--hhhccc-hhccccCcCccCcCCC-CCCCCC-----
Q 017975 216 SVNHYLT--ELPVGISSLV-------SLHHLDLSSTKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEE-GNVLSD----- 277 (363)
Q Consensus 216 ~~~~~~~--~lp~~i~~L~-------~L~~L~l~~~~l~~lP~--~i~~L~-L~~L~~~~~~l~~lp~-~~l~~l----- 277 (363)
++|+.++ .+|..++.+. +|++|++++|.+..+|. .++.+. |+.|+++.|.+..+|. +++..+
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~L 602 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKL 602 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEEC
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEEC
Confidence 9995254 5887777666 89999999999889998 888888 9999999988887774 222111
Q ss_pred ------Ccccchhhhcc-ccccceEEEEeccCcccccccCCCchhhhhheeeecccCCC---CcCCcccc--ccccccee
Q 017975 278 ------DAESLMKEIHC-LEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSL---PLNLLHLA--NMEHLQLF 345 (363)
Q Consensus 278 ------~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~---~~~~~~l~--~l~~L~~L 345 (363)
.+|..+..+++ |+.|++.+|.+. ..| ..+..... ..|+.|++++|... +..+..+. .+++|+.|
T Consensus 603 s~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~~--~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 603 DYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIP-NIFNAKSV--YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp CSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCC-SCCCTTCS--SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred cCCccccchHHHhhccccCCEEECcCCCCC-cCc-hhhhcccc--CCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence 45566677777 777777777765 222 22222221 11377777776632 22122233 33478888
Q ss_pred eeccCCCC
Q 017975 346 SIWDSNLE 353 (363)
Q Consensus 346 ~l~~c~~l 353 (363)
++++|.+.
T Consensus 679 ~Ls~N~L~ 686 (876)
T 4ecn_A 679 TLSYNEIQ 686 (876)
T ss_dssp ECCSSCCC
T ss_pred EccCCcCC
Confidence 88888776
No 70
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.66 E-value=4.1e-17 Score=163.08 Aligned_cols=112 Identities=14% Similarity=0.205 Sum_probs=97.9
Q ss_pred ccCCchhHHHHHHHHhcCC-CChhHHHHHHHHHhccccccccchHHHHHHHHhhcCCCCChhh-hHHHhHhcCCCCCccc
Q 017975 4 QCHGLPLALETVGQAMAGK-EFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDEL-RSCLLYCCLFPEDSEI 81 (363)
Q Consensus 4 ~c~GlPLai~~ig~~L~~~-~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~l-k~cfl~~s~Fp~~~~~ 81 (363)
-|+|+||||+++|+.|+++ .+.++|+.+ . .+.+..+|++||+.||+ ++ |.||+|||+||+++.|
T Consensus 322 ICgGLPLALkLaGs~Lr~k~~s~eeW~~~--------~-----~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I 387 (1221)
T 1vt4_I 322 VLTTNPRRLSIIAESIRDGLATWDNWKHV--------N-----CDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHI 387 (1221)
T ss_dssp HCCCCHHHHHHHHHHHHHSCSSHHHHHHC--------S-----CHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCE
T ss_pred HhCCCHHHHHHHHHHHhCCCCCHHHHhcC--------C-----hhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCC
Confidence 4999999999999999986 367888763 1 13899999999999999 78 9999999999999999
Q ss_pred ChHHHHHHHHHhCCccCcCHHHHHHHHHHhhcccCC--CCceeechhHHHHHH
Q 017975 82 RKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEG--GDHVKMHDMIRDMAL 132 (363)
Q Consensus 82 ~~~~li~~w~a~g~~~~~~~~~~~~~L~~rsli~~~--~~~~~mhdl~~~~~~ 132 (363)
+++.++.+|+++|. ..+..++++|+++|||+.. ...|+|||++++++.
T Consensus 388 ~~elLa~LW~aeGe---edAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 388 PTILLSLIWFDVIK---SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp EHHHHHHHHCSSCS---HHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred CHHHHHHHhcCCCH---HHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 99999999999982 2388999999999999983 578999999999663
No 71
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=4e-16 Score=152.03 Aligned_cols=191 Identities=19% Similarity=0.163 Sum_probs=115.8
Q ss_pred cccceEEEeecccccccCCCCCCCCccEEEeccCCccccc--hHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEE
Q 017975 161 WEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEIT--ESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLD 238 (363)
Q Consensus 161 ~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 238 (363)
+++++.|++.+|.+........+++|++|++++|.+.... +..+..+++|++|++++| .+..+|..++.+++|++|+
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~ 402 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLD 402 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEE
T ss_pred ccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC-ccccccccccccCCCCEEE
Confidence 3445555555544443333356777888888888776653 333777888888888888 5666666677888888888
Q ss_pred ccCCCCCccch--hhhccc-hhccccCcCccCcCCC---CCCCCC-------------CcccchhhhccccccceEEEEe
Q 017975 239 LSSTKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEE---GNVLSD-------------DAESLMKEIHCLEQLNLIALSL 299 (363)
Q Consensus 239 l~~~~l~~lP~--~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l-------------~~~~~l~~l~~L~~L~l~~~~~ 299 (363)
+++|.+...+. .+..++ |+.|+++.|.+...+. .++.++ ..|..+..+++|+.|++.+|.+
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 88887776533 566666 7777777777655432 111111 2344555666666666666655
Q ss_pred ccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccc
Q 017975 300 RGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNV 357 (363)
Q Consensus 300 ~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~ 357 (363)
.+..+ ..+..++++ ++|++++|......+..+.++++|+.|++++|+.....|
T Consensus 483 ~~~~~-~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 483 EQLSP-TAFNSLSSL----QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CEECT-TTTTTCTTC----CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCh-hhhhcccCC----CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 54332 344455554 666666665433333446666677777777766655443
No 72
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=150.92 Aligned_cols=125 Identities=23% Similarity=0.185 Sum_probs=105.8
Q ss_pred eEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCCC
Q 017975 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTK 243 (363)
Q Consensus 165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~ 243 (363)
+++++++|.++.+|.... ++|++|++++|.+..+++..|.++++|++|++++| .++.+ |..++++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc
Confidence 679999999999986333 89999999999999999877999999999999999 55555 8899999999999999999
Q ss_pred CCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975 244 VRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG 301 (363)
Q Consensus 244 l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~ 301 (363)
++.+|.. .+. |+.|+++.|.++.++ .|..++.+++|+.|++.+|.+.+
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~--------~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALP--------ICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCC--------CCGGGGGCTTCCEEEEEESSCCG
T ss_pred eeecCcc--ccCCccEEeccCCcccccc--------chhhhccCCcceEEEecCcccch
Confidence 9999988 777 999999999987643 33567777777777777766543
No 73
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=5.1e-16 Score=138.50 Aligned_cols=163 Identities=18% Similarity=0.286 Sum_probs=134.3
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 222 (363)
..+...+..+..++.+..+++++.|++++|.++.++.+..+++|++|++++|.++.++. +..+++|++|++++| .++
T Consensus 49 ~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~i~ 125 (291)
T 1h6t_A 49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN-GIS 125 (291)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS-CCC
T ss_pred cEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCC-cCC
Confidence 45666677777778888889999999999999988888899999999999999988765 889999999999999 677
Q ss_pred ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975 223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG 301 (363)
Q Consensus 223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~ 301 (363)
.++ .++.+++|++|++++|.++.+ ..+..++ |+.|++++|.++.++ . +..+++|+.|++.+|.+.+
T Consensus 126 ~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~----------~-l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 126 DIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV----------P-LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG----------G-GTTCTTCCEEECCSSCCCB
T ss_pred CCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccch----------h-hcCCCccCEEECCCCcCCC
Confidence 775 788999999999999999988 5778888 999999999887776 3 7778888888888887765
Q ss_pred CcccccccCCCchhhhhheeeecccCC
Q 017975 302 SRGVENFLKFPKLQNITQALHIKDCNS 328 (363)
Q Consensus 302 ~~~~~~l~~l~~l~~~L~~L~l~~~~~ 328 (363)
. +.+..++++ +.|++++|..
T Consensus 193 l---~~l~~l~~L----~~L~l~~n~i 212 (291)
T 1h6t_A 193 L---RALAGLKNL----DVLELFSQEC 212 (291)
T ss_dssp C---GGGTTCTTC----SEEEEEEEEE
T ss_pred C---hhhccCCCC----CEEECcCCcc
Confidence 3 235666665 8888888763
No 74
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.65 E-value=3e-15 Score=135.91 Aligned_cols=201 Identities=17% Similarity=0.219 Sum_probs=137.7
Q ss_pred eEEecCCCCCCC--ccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975 144 FLVRAGVGLTDA--PKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221 (363)
Q Consensus 144 ~~~~~~~~~~~~--~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 221 (363)
.+...+..+..+ ..+..++++++|++++|.++.+|.... ++|++|++++|.+..+++..+.++++|++|++++| .+
T Consensus 80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l 157 (330)
T 1xku_A 80 TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PL 157 (330)
T ss_dssp EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CC
T ss_pred EEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCC-cC
Confidence 444455555444 245566778888888887777764322 67888888888888887777888888888888888 34
Q ss_pred c---ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCC---C---CCCCC---------Ccccc
Q 017975 222 T---ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEE---G---NVLSD---------DAESL 282 (363)
Q Consensus 222 ~---~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~---~---~l~~l---------~~~~~ 282 (363)
. ..|..++.+++|++|++++|.++.+|..+. . |+.|+++.|.++.++. . ++..+ ..+..
T Consensus 158 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 158 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235 (330)
T ss_dssp CGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred CccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh
Confidence 3 456678888888888888888887776554 4 6777777777666543 2 22222 12346
Q ss_pred hhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccc------cccccceeeeccCCCCC
Q 017975 283 MKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLA------NMEHLQLFSIWDSNLED 354 (363)
Q Consensus 283 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~------~l~~L~~L~l~~c~~l~ 354 (363)
+..+++|+.|++.+|.+... + ..+..++++ ++|++++|.........+. ....|+.|++++|+...
T Consensus 236 ~~~l~~L~~L~L~~N~l~~l-p-~~l~~l~~L----~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLVKV-P-GGLADHKYI----QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp GGGSTTCCEEECCSSCCSSC-C-TTTTTCSSC----CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred ccCCCCCCEEECCCCcCccC-C-hhhccCCCc----CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 78889999999999987733 2 346666666 9999999874332222232 34788899999998764
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=2.1e-16 Score=142.52 Aligned_cols=178 Identities=19% Similarity=0.137 Sum_probs=111.3
Q ss_pred cccccceEEEeecccccccCC-CCCC-----CCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccc--cCccc--
Q 017975 159 EEWEGVKRISLMENEIQSLPQ-IPTC-----PRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE--LPVGI-- 228 (363)
Q Consensus 159 ~~~~~l~~L~l~~~~~~~l~~-~~~l-----~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~--lp~~i-- 228 (363)
..++++++|++++|.++.+|. +..+ ++|++|++++|.+..+++..++++++|++|++++|+..+. +|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 456677777777777766543 2222 6777777777777777655577777777777777743332 34444
Q ss_pred cCCCCCCEEEccCCCCCccch---hh-hccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCc
Q 017975 229 SSLVSLHHLDLSSTKVRGLPQ---EL-KALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSR 303 (363)
Q Consensus 229 ~~L~~L~~L~l~~~~l~~lP~---~i-~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~ 303 (363)
+.+++|++|++++|.++.+|. .+ ..++ |+.|+++.|.++..++ ...+..+++|+.|++.+|.+.. .
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~~l~~L~~L~Ls~N~l~~-i 268 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG--------APSCDWPSQLNSLNLSFTGLKQ-V 268 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC--------CSCCCCCTTCCEEECTTSCCSS-C
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc--------hhhhhhcCCCCEEECCCCccCh-h
Confidence 667777777777777774432 22 3445 7777777777655431 1234456778888888887763 3
Q ss_pred ccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975 304 GVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 304 ~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~ 354 (363)
+ ..+. ++ |++|++++|+-... + .+..+++|+.|++++|++.+
T Consensus 269 p-~~~~--~~----L~~L~Ls~N~l~~~-p-~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 269 P-KGLP--AK----LSVLDLSYNRLDRN-P-SPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C-SSCC--SE----EEEEECCSSCCCSC-C-CTTTSCEEEEEECTTCTTTC
T ss_pred h-hhcc--CC----ceEEECCCCCCCCC-h-hHhhCCCCCEEeccCCCCCC
Confidence 3 2222 33 48888888764222 3 37788888888888887654
No 76
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=6.9e-16 Score=129.52 Aligned_cols=152 Identities=15% Similarity=0.197 Sum_probs=111.4
Q ss_pred ccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEE
Q 017975 158 IEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHL 237 (363)
Q Consensus 158 ~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 237 (363)
...+++++.|++++|.++.+|.+..+++|++|++++|.+..++. +..+++|++|++++|......|..++.+++|++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 36678899999999999998888899999999999998777653 8899999999999994444578899999999999
Q ss_pred EccCCCCCc-cchhhhccc-hhccccCcCc-cCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCch
Q 017975 238 DLSSTKVRG-LPQELKALV-LRMLHCGSNH-WPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL 314 (363)
Q Consensus 238 ~l~~~~l~~-lP~~i~~L~-L~~L~~~~~~-l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l 314 (363)
++++|.++. .|..+..++ |+.|+++.|. ++.+| .+ ..++++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-----------~l-------------------------~~l~~L 161 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-----------PL-------------------------KTLPEL 161 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-----------GG-------------------------GGCSSC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-----------hh-------------------------cCCCCC
Confidence 999998886 566777777 7777777665 43332 22 333343
Q ss_pred hhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975 315 QNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE 353 (363)
Q Consensus 315 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l 353 (363)
+.|++++|... . +..+..+++|+.|++++|++-
T Consensus 162 ----~~L~l~~n~i~-~-~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 162 ----KSLNIQFDGVH-D-YRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ----CEEECTTBCCC-C-CTTGGGCSSCCEEEECBC---
T ss_pred ----CEEECCCCCCc-C-hHHhccCCCCCEEEeeCcccC
Confidence 56666665421 1 225667777888888877753
No 77
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=3.8e-17 Score=143.60 Aligned_cols=156 Identities=23% Similarity=0.295 Sum_probs=127.6
Q ss_pred CCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccc
Q 017975 149 GVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI 228 (363)
Q Consensus 149 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i 228 (363)
+..++.++.+..+++++.|++++|.++.++.+..+++|++|++++|.++.+++ +.++++|++|++++| .++.+|. +
T Consensus 28 ~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~-~ 103 (263)
T 1xeu_A 28 KQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNG-I 103 (263)
T ss_dssp CSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTT-C
T ss_pred CCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCc-c
Confidence 34455566677888999999999999999888899999999999999998877 889999999999999 7777874 3
Q ss_pred cCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCccccc
Q 017975 229 SSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVEN 307 (363)
Q Consensus 229 ~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 307 (363)
.. .+|++|++++|.++.+| .+..+. |+.|++++|+++.+| .+..+++|+.|++.+|.+.+. ..
T Consensus 104 ~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-----------~l~~l~~L~~L~L~~N~i~~~---~~ 167 (263)
T 1xeu_A 104 PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-----------MLGFLSKLEVLDLHGNEITNT---GG 167 (263)
T ss_dssp CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-----------GGGGCTTCCEEECTTSCCCBC---TT
T ss_pred cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-----------HHccCCCCCEEECCCCcCcch---HH
Confidence 44 89999999999999886 577888 999999999887664 477788888998888887765 44
Q ss_pred ccCCCchhhhhheeeecccCC
Q 017975 308 FLKFPKLQNITQALHIKDCNS 328 (363)
Q Consensus 308 l~~l~~l~~~L~~L~l~~~~~ 328 (363)
+..++++ +.|++++|..
T Consensus 168 l~~l~~L----~~L~l~~N~~ 184 (263)
T 1xeu_A 168 LTRLKKV----NWIDLTGQKC 184 (263)
T ss_dssp STTCCCC----CEEEEEEEEE
T ss_pred hccCCCC----CEEeCCCCcc
Confidence 5666666 8888888764
No 78
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.64 E-value=6.6e-16 Score=157.46 Aligned_cols=181 Identities=21% Similarity=0.230 Sum_probs=152.9
Q ss_pred eEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCCC
Q 017975 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTK 243 (363)
Q Consensus 165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~ 243 (363)
+..+.++++++.+|. ..+++++|++++|.++.+++..|.++++|++|+|++|.....+ |..++++++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 466777888999998 6689999999999999987777999999999999999767777 7889999999999999999
Q ss_pred CCcc-chhhhccc-hhccccCcCccCc-CCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhhe
Q 017975 244 VRGL-PQELKALV-LRMLHCGSNHWPI-AEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQA 320 (363)
Q Consensus 244 l~~l-P~~i~~L~-L~~L~~~~~~l~~-lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~ 320 (363)
+..+ |..+..+. |+.|+++.|.+.. +|. ...+..+++|+.|++++|.+.+..+...+..+++| ++
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L----~~ 152 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLK--------DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL----KS 152 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCST--------TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC----CE
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCccccc--------CccccccCCCCEEECCCCcccccccchhHhhCCCC----CE
Confidence 9987 78899999 9999999998875 331 12478899999999999999877655678888888 99
Q ss_pred eeecccCCCCcCCcccccc--cccceeeeccCCCCCccccc
Q 017975 321 LHIKDCNSLPLNLLHLANM--EHLQLFSIWDSNLEDWNVDC 359 (363)
Q Consensus 321 L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~c~~l~~~~~~ 359 (363)
|++++|......+..+..+ ++|+.|++++|......|..
T Consensus 153 L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~ 193 (844)
T 3j0a_A 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193 (844)
T ss_dssp EEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC
T ss_pred EECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc
Confidence 9999987544445667776 89999999999988766543
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=2.9e-16 Score=141.54 Aligned_cols=182 Identities=20% Similarity=0.209 Sum_probs=143.9
Q ss_pred ccccceEEEeecccccc-cCC-C--CCCCCccEEEeccCCccccchHHhcCC-----CCCCEEEcccCCCccccC-cccc
Q 017975 160 EWEGVKRISLMENEIQS-LPQ-I--PTCPRLQTLLLEYNHIEEITESFFQSL-----PSLRVLNLSVNHYLTELP-VGIS 229 (363)
Q Consensus 160 ~~~~l~~L~l~~~~~~~-l~~-~--~~l~~L~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~L~~~~~~~~lp-~~i~ 229 (363)
.++++++|++++|.++. +|. + ..+++|++|++++|.++..|.. ++.+ ++|++|++++| .+..+| ..++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQA-HSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-HHHHHTTCCTTCCEEEEESC-SCCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-HHHHHHhhcCCCcEEEeeCC-CCccchHHHhc
Confidence 46799999999999984 554 3 7899999999999999988544 6666 99999999999 555555 8999
Q ss_pred CCCCCCEEEccCCCCCc---cchhh--hccc-hhccccCcCccCcCCCCCCCCCCcc-cchhhhccccccceEEEEeccC
Q 017975 230 SLVSLHHLDLSSTKVRG---LPQEL--KALV-LRMLHCGSNHWPIAEEGNVLSDDAE-SLMKEIHCLEQLNLIALSLRGS 302 (363)
Q Consensus 230 ~L~~L~~L~l~~~~l~~---lP~~i--~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~-~~l~~l~~L~~L~l~~~~~~~~ 302 (363)
.+++|++|++++|.+.. +|..+ ..+. |+.|+++.|.++.++. .+ ..+..+++|+.|++.+|.+.+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG-------VCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH-------HHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH-------HHHHHHhcCCCCCEEECCCCcCCcc
Confidence 99999999999998765 45566 7788 9999999999875541 11 2335678999999999999876
Q ss_pred cccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975 303 RGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD 358 (363)
Q Consensus 303 ~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 358 (363)
.+...+..++++ ++|++++|... ..+..+. ++|+.|++++|.+.+. |.
T Consensus 244 ~~~~~~~~l~~L----~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~ 291 (312)
T 1wwl_A 244 AGAPSCDWPSQL----NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS 291 (312)
T ss_dssp CCCSCCCCCTTC----CEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC
T ss_pred cchhhhhhcCCC----CEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh
Confidence 654555556666 99999998743 3344454 8999999999988766 44
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.63 E-value=7.4e-16 Score=149.56 Aligned_cols=174 Identities=21% Similarity=0.242 Sum_probs=146.0
Q ss_pred EEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCCCC
Q 017975 166 RISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKV 244 (363)
Q Consensus 166 ~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l 244 (363)
..+.+++.++.+|... .++|++|++++|.++.+++..+.++++|++|++++| .++.+ |..++.+++|++|++++|.+
T Consensus 9 ~c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 9 VCDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EEECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred eEECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCcc
Confidence 3577778888888632 379999999999999988777999999999999999 55555 57899999999999999999
Q ss_pred Cccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheee
Q 017975 245 RGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALH 322 (363)
Q Consensus 245 ~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~ 322 (363)
+.+|.. ++.+. |+.|+++.|.++.++ .|..+..+++|+.|++.+|...+..+...+..++++ ++|+
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L----~~L~ 154 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLG--------VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL----NELE 154 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSC--------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE----EEEE
T ss_pred CccCHHHhccCCCCcEEECCCCcccccc--------hhhhhhccCCccEEECCCCccccccCHhhhhccccc----Ceee
Confidence 998765 89999 999999999987553 236788999999999999985555555677888877 9999
Q ss_pred ecccCCCCcCCcccccccccceeeeccCCCC
Q 017975 323 IKDCNSLPLNLLHLANMEHLQLFSIWDSNLE 353 (363)
Q Consensus 323 l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l 353 (363)
+++|......+..+..+++|+.|++++|...
T Consensus 155 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred ccCCcccccChhhhhccccCceEecccCccc
Confidence 9998865555678999999999999998754
No 81
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=6.8e-16 Score=150.82 Aligned_cols=163 Identities=19% Similarity=0.294 Sum_probs=131.0
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccc
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 223 (363)
.+...+..+..++.+..+++|+.|++++|.+..++.+..+++|+.|++++|.+..++. +..+++|++|+|++| .+..
T Consensus 47 ~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N-~l~~ 123 (605)
T 1m9s_A 47 QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHN-GISD 123 (605)
T ss_dssp CCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTT--STTCTTCCEEECTTS-CCCC
T ss_pred EEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChh--hccCCCCCEEEecCC-CCCC
Confidence 3445556667777788888999999999998888888889999999999998888763 888999999999999 6777
Q ss_pred cCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccC
Q 017975 224 LPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGS 302 (363)
Q Consensus 224 lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~ 302 (363)
+| .+..+++|++|+|++|.+..+ ..+..+. |+.|+++.|.+..++ + +..+++|+.|++.+|.+.+.
T Consensus 124 l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~----------~-l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 124 IN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV----------P-LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp CG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG----------G-GTTCTTCCEEECCSSCCCBC
T ss_pred Cc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCch----------h-hccCCCCCEEECcCCCCCCC
Confidence 65 688899999999999998888 5777888 999999988887765 3 77788888888888877654
Q ss_pred cccccccCCCchhhhhheeeecccCCC
Q 017975 303 RGVENFLKFPKLQNITQALHIKDCNSL 329 (363)
Q Consensus 303 ~~~~~l~~l~~l~~~L~~L~l~~~~~~ 329 (363)
+.+..+++| +.|++++|...
T Consensus 191 ---~~l~~l~~L----~~L~L~~N~l~ 210 (605)
T 1m9s_A 191 ---RALAGLKNL----DVLELFSQECL 210 (605)
T ss_dssp ---GGGTTCTTC----SEEECCSEEEE
T ss_pred ---hHHccCCCC----CEEEccCCcCc
Confidence 345666666 88888887743
No 82
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.63 E-value=1.3e-15 Score=151.61 Aligned_cols=205 Identities=22% Similarity=0.212 Sum_probs=150.1
Q ss_pred eEEecCCCCCCCc--cccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975 144 FLVRAGVGLTDAP--KIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH 219 (363)
Q Consensus 144 ~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~ 219 (363)
.+...+..+..++ .+..+++++.|++++|.++.+|. +..+++|++|++++|.+..+++..|+++++|++|++++|.
T Consensus 53 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 132 (680)
T 1ziw_A 53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132 (680)
T ss_dssp EEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc
Confidence 4444444444442 35667888999998888888874 7888999999999998888887668889999999999985
Q ss_pred CccccCccccCCCCCCEEEccCCCCCccchh-hh--ccc-hhccccCcCccCcCCCC---C---C---------------
Q 017975 220 YLTELPVGISSLVSLHHLDLSSTKVRGLPQE-LK--ALV-LRMLHCGSNHWPIAEEG---N---V--------------- 274 (363)
Q Consensus 220 ~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~-i~--~L~-L~~L~~~~~~l~~lp~~---~---l--------------- 274 (363)
.....|..++++++|++|++++|.++.+|.. +. .+. |+.|+++.|.++.++.. + +
T Consensus 133 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 212 (680)
T 1ziw_A 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212 (680)
T ss_dssp CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHH
T ss_pred ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhH
Confidence 4455567788899999999999988887653 33 334 88888888888776541 1 1
Q ss_pred ------------CCC---------Ccccchhhhcc--ccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCc
Q 017975 275 ------------LSD---------DAESLMKEIHC--LEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPL 331 (363)
Q Consensus 275 ------------~~l---------~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~ 331 (363)
..+ ..|..+..++. |+.|++.+|.+.+..+ ..+..++++ ++|++++|.....
T Consensus 213 ~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L----~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN-DSFAWLPQL----EYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT-TTTTTCTTC----CEEECCSCCBSEE
T ss_pred HHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc-ccccCcccc----cEeeCCCCccCcc
Confidence 111 12344555554 8888888887765433 556677776 9999999876555
Q ss_pred CCcccccccccceeeeccCCCC
Q 017975 332 NLLHLANMEHLQLFSIWDSNLE 353 (363)
Q Consensus 332 ~~~~l~~l~~L~~L~l~~c~~l 353 (363)
.+..+..+++|+.|++++|...
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTK 309 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCC
T ss_pred ChhhhcCCCCccEEeccchhhh
Confidence 5668999999999999987644
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=1.9e-16 Score=151.38 Aligned_cols=196 Identities=16% Similarity=0.141 Sum_probs=109.5
Q ss_pred eeEEecCCCCCCCc--cccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975 143 KFLVRAGVGLTDAP--KIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220 (363)
Q Consensus 143 ~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 220 (363)
..+...+..+..++ .+..+++++.|++++|.+...+.+..+++|++|++++|.++.+++. ++|++|++++| .
T Consensus 37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L~L~~N-~ 110 (487)
T 3oja_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANN-N 110 (487)
T ss_dssp CEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC-----TTCCEEECCSS-C
T ss_pred cEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC-----CCcCEEECcCC-c
Confidence 45555666665554 4566778888888888877666677777788888877777665532 44555555555 3
Q ss_pred ccccCccccCCCCCCEEEccCCCCCcc-chhhhccc-hhccccCcCccCcCCC----CCCCCC----------Ccccchh
Q 017975 221 LTELPVGISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEE----GNVLSD----------DAESLMK 284 (363)
Q Consensus 221 ~~~lp~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~-L~~L~~~~~~l~~lp~----~~l~~l----------~~~~~l~ 284 (363)
+..+|. ..+++|++|++++|.++.+ |..++.+. |+.|++++|.+...+. .++.++ ...+...
T Consensus 111 l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~ 188 (487)
T 3oja_A 111 ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188 (487)
T ss_dssp CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC
T ss_pred CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc
Confidence 333332 1234555555555555544 23444444 5555555555443221 000000 0001222
Q ss_pred hhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975 285 EIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE 353 (363)
Q Consensus 285 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l 353 (363)
.+++|+.|++++|.+.+..+ .+..++++ +.|++++|... ..+..+..+++|+.|++++|+..
T Consensus 189 ~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L----~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAFMGP--EFQSAAGV----TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCTTCCEEECCSSCCCEECG--GGGGGTTC----SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred cCCCCCEEECCCCCCCCCCH--hHcCCCCc----cEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 46677777777776664332 25555554 77777776532 23445667777777777777765
No 84
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=5.3e-16 Score=136.27 Aligned_cols=143 Identities=17% Similarity=0.241 Sum_probs=125.0
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 222 (363)
..+...+..+..++.+..+++++.|++++|.++.++.+..+++|++|++++|.++.+++ +.. ++|++|++++| .++
T Consensus 44 ~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N-~l~ 119 (263)
T 1xeu_A 44 QNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNN-ELR 119 (263)
T ss_dssp SEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTT--CCC-SSCCEEECCSS-CCS
T ss_pred cEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCc--ccc-CcccEEEccCC-ccC
Confidence 46677777888888888899999999999999999889999999999999999998876 444 99999999999 777
Q ss_pred ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975 223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG 301 (363)
Q Consensus 223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~ 301 (363)
.+| .++.+++|++|++++|.++.+| .+..+. |+.|+++.|.++.++ .+..+++|+.|++.+|.+..
T Consensus 120 ~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~-----------~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 120 DTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTG-----------GLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp BSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCT-----------TSTTCCCCCEEEEEEEEEEC
T ss_pred CCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchH-----------HhccCCCCCEEeCCCCcccC
Confidence 776 6999999999999999999997 688888 999999999987653 57788999999999999876
Q ss_pred C
Q 017975 302 S 302 (363)
Q Consensus 302 ~ 302 (363)
.
T Consensus 187 ~ 187 (263)
T 1xeu_A 187 E 187 (263)
T ss_dssp C
T ss_pred C
Confidence 5
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.62 E-value=1.9e-15 Score=147.90 Aligned_cols=199 Identities=19% Similarity=0.156 Sum_probs=95.8
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccc
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 223 (363)
.+...++.++.++. .+++++.|++++|.++.+|. .+++|++|++++|.++.++. .+++|++|++++| .++.
T Consensus 65 ~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N-~l~~ 135 (622)
T 3g06_A 65 TLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGN-QLTS 135 (622)
T ss_dssp EEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSS-CCSC
T ss_pred EEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCC-CCCc
Confidence 33444444444443 33455555555555555554 44555555555555555443 2344444444444 3444
Q ss_pred cCccccCCCCCCEEEccCCCCCccchhhhcc-----------------c-hhccccCcCccCcCCC--CCCCCC------
Q 017975 224 LPVGISSLVSLHHLDLSSTKVRGLPQELKAL-----------------V-LRMLHCGSNHWPIAEE--GNVLSD------ 277 (363)
Q Consensus 224 lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L-----------------~-L~~L~~~~~~l~~lp~--~~l~~l------ 277 (363)
+|.. +++|++|++++|.++.+|..+.+| . |+.|++++|.++.+|. .++..+
T Consensus 136 lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~ 212 (622)
T 3g06_A 136 LPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNR 212 (622)
T ss_dssp CCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCc
Confidence 4432 244555555555544443322221 3 4555555555555443 222111
Q ss_pred --CcccchhhhccccccceEEEEeccCcc-----------cccccCCCchhhhhheeeecccCCCCcCCcccccccccce
Q 017975 278 --DAESLMKEIHCLEQLNLIALSLRGSRG-----------VENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQL 344 (363)
Q Consensus 278 --~~~~~l~~l~~L~~L~l~~~~~~~~~~-----------~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 344 (363)
.+|. .+++|+.|++.+|.+.+... ...+..++.....|+.|++++|... ..+..+.++++|+.
T Consensus 213 l~~l~~---~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 213 LTSLPA---LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETT 288 (622)
T ss_dssp CSSCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCC-SCCGGGGGSCTTCE
T ss_pred ccccCC---CCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCC-cCCHHHhhccccCE
Confidence 1111 12344444444444332110 0001111222234578888887543 44567888888999
Q ss_pred eeeccCCCCCcccc
Q 017975 345 FSIWDSNLEDWNVD 358 (363)
Q Consensus 345 L~l~~c~~l~~~~~ 358 (363)
|++++|++.+..|.
T Consensus 289 L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 289 VNLEGNPLSERTLQ 302 (622)
T ss_dssp EECCSCCCCHHHHH
T ss_pred EEecCCCCCCcCHH
Confidence 99999888766554
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.62 E-value=1.4e-15 Score=148.07 Aligned_cols=148 Identities=22% Similarity=0.234 Sum_probs=116.8
Q ss_pred ccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEcc
Q 017975 162 EGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLS 240 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~ 240 (363)
...++++++++.++.+|.-. .++|++|++++|.+..+++..|.++++|++|++++| .++.+ |..++++++|++|+++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp --CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECT
T ss_pred CCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECC
Confidence 44589999999999998632 389999999999999999877999999999999999 56665 7789999999999999
Q ss_pred CCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhh
Q 017975 241 STKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQ 319 (363)
Q Consensus 241 ~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~ 319 (363)
+|.++.+|.. .+. |+.|+++.|.++.+| .|..++.+++|+.|++.+|.+... .+..++++ .|+
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~--------~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L--~L~ 172 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFNDFDVLP--------VCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHL--HLS 172 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSSCCSBCC--------CCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTS--CEE
T ss_pred CCcCCccCcc--ccccCCEEECCCCCccccC--------chHhhcccCcccEEecCCCccccC----chhhhhhc--eee
Confidence 9999999988 777 999999999998765 345677777788777777766542 22223322 236
Q ss_pred eeeecccC
Q 017975 320 ALHIKDCN 327 (363)
Q Consensus 320 ~L~l~~~~ 327 (363)
.|++++|.
T Consensus 173 ~L~L~~n~ 180 (562)
T 3a79_B 173 CILLDLVS 180 (562)
T ss_dssp EEEEEESS
T ss_pred EEEeeccc
Confidence 66666654
No 87
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=1.5e-15 Score=130.58 Aligned_cols=147 Identities=23% Similarity=0.289 Sum_probs=119.4
Q ss_pred EEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975 145 LVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222 (363)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 222 (363)
+.+.+..+..+|.. -.++++.|++++|.++.++. +..+++|++|++++|.+..+++..|..+++|++|+|++| .++
T Consensus 24 v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~ 101 (229)
T 3e6j_A 24 VDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLT 101 (229)
T ss_dssp EECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred eEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCC
Confidence 55566666666642 23789999999999888743 678899999999999998888877889999999999999 677
Q ss_pred ccCcc-ccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEec
Q 017975 223 ELPVG-ISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR 300 (363)
Q Consensus 223 ~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~ 300 (363)
.+|.. +..+++|++|++++|.++.+|..+..+. |+.|+++.|.++.+|. ..+..+++|+.|++.+|.+.
T Consensus 102 ~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~---------~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH---------GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT---------TTTTTCTTCCEEECTTSCBC
T ss_pred ccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH---------HHHhCCCCCCEEEeeCCCcc
Confidence 77654 6889999999999999999999888888 9999999999888773 45677888888888888776
Q ss_pred cC
Q 017975 301 GS 302 (363)
Q Consensus 301 ~~ 302 (363)
..
T Consensus 173 c~ 174 (229)
T 3e6j_A 173 CE 174 (229)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=1.8e-15 Score=146.45 Aligned_cols=186 Identities=17% Similarity=0.159 Sum_probs=144.6
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 222 (363)
..+...+..+..+|... .++++.|++++|.++.+| ..+++|++|++++|.++.+|. +.+ +|++|++++| .++
T Consensus 62 ~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N-~l~ 133 (571)
T 3cvr_A 62 SELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNN-QLT 133 (571)
T ss_dssp SEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSS-CCS
T ss_pred cEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCC-cCC
Confidence 45666666777666522 378999999999999998 668999999999999999877 554 9999999999 788
Q ss_pred ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975 223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG 301 (363)
Q Consensus 223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~ 301 (363)
.+|. .+++|++|++++|.++.+|. .+. |+.|++++|.++.+| . +. ++|+.|++.+|.+..
T Consensus 134 ~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp----------~-l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 134 MLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLP----------E-LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp CCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC----------C-CC--TTCCEEECCSSCCSS
T ss_pred CCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcc----------h-hh--CCCCEEECcCCCCCc
Confidence 8987 68999999999999999997 455 899999999998887 3 33 899999999998873
Q ss_pred CcccccccC-CCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975 302 SRGVENFLK-FPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC 359 (363)
Q Consensus 302 ~~~~~~l~~-l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 359 (363)
. |. +.. +......++.|++++|... ..+..+..+++|+.|++++|++.+.+|..
T Consensus 195 l-p~--~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 195 L-PA--VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp C-CC--CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred h-hh--HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 3 21 222 1111112399999997643 44667888999999999999998877654
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=2.1e-15 Score=126.54 Aligned_cols=146 Identities=18% Similarity=0.214 Sum_probs=123.5
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 222 (363)
..+...+..+..++.+..+++++.|++++|.++.++.+..+++|++|++++|.++...+..++.+++|++|++++|....
T Consensus 47 ~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 47 TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126 (197)
T ss_dssp CEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred cEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence 45666777777878888999999999999999988889999999999999999987444448999999999999995444
Q ss_pred ccCccccCCCCCCEEEccCCC-CCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEec
Q 017975 223 ELPVGISSLVSLHHLDLSSTK-VRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR 300 (363)
Q Consensus 223 ~lp~~i~~L~~L~~L~l~~~~-l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~ 300 (363)
..|..++.+++|++|++++|. +..+| .+..++ |+.|++++|.++.++ .+..+++|+.|++.+|.+.
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-----------~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-----------GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-----------TGGGCSSCCEEEECBC---
T ss_pred HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-----------HhccCCCCCEEEeeCcccC
Confidence 578899999999999999997 88887 688888 999999999887664 5677888899988888764
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=7.1e-16 Score=147.45 Aligned_cols=178 Identities=21% Similarity=0.250 Sum_probs=132.7
Q ss_pred ccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEE
Q 017975 160 EWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHL 237 (363)
Q Consensus 160 ~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 237 (363)
.+++++.|++++|.+..++ .+..+++|++|++++|.++..++ +..+++|++|+|++| .++.+|.. ++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~~----~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLVG----PSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEEC----TTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCCC----CCcCEE
Confidence 3458999999999999876 48899999999999999998776 899999999999999 77777633 899999
Q ss_pred EccCCCCCccchhhhccc-hhccccCcCccCcCCC---CCCCCC------------Ccccchh-hhccccccceEEEEec
Q 017975 238 DLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEE---GNVLSD------------DAESLMK-EIHCLEQLNLIALSLR 300 (363)
Q Consensus 238 ~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l------------~~~~~l~-~l~~L~~L~l~~~~~~ 300 (363)
++++|.+..+|.. .+. |+.|++++|.++.+++ +++.++ ..|..+. .+++|+.|++.+|.+.
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 9999999998754 345 8889999999887754 122211 2333343 5667777777776665
Q ss_pred cCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975 301 GSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 301 ~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~ 354 (363)
+..+ +..++++ +.|++++|... ..++.+..+++|+.|++++|.+..
T Consensus 183 ~~~~---~~~l~~L----~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 183 DVKG---QVVFAKL----KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp EEEC---CCCCTTC----CEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE
T ss_pred cccc---cccCCCC----CEEECCCCCCC-CCCHhHcCCCCccEEEecCCcCcc
Confidence 4421 2234444 88888887643 234457788888889988888764
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=137.59 Aligned_cols=192 Identities=17% Similarity=0.110 Sum_probs=139.8
Q ss_pred eeEEecCCCCCCC-c-cc--cccccceEEEeeccccccc-C-----CCCCCCCccEEEeccCCccccchHHhcCCCCCCE
Q 017975 143 KFLVRAGVGLTDA-P-KI--EEWEGVKRISLMENEIQSL-P-----QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRV 212 (363)
Q Consensus 143 ~~~~~~~~~~~~~-~-~~--~~~~~l~~L~l~~~~~~~l-~-----~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 212 (363)
..+...+..+... + .+ ..+++++.|++++|.+... + .+..+++|++|++++|.+..+++..++.+++|++
T Consensus 94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 173 (310)
T 4glp_A 94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTS 173 (310)
T ss_dssp CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCE
T ss_pred eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCE
Confidence 3444555554432 2 22 6678899999999988752 1 2346889999999999998888877889999999
Q ss_pred EEcccCCCccc--cC--ccccCCCCCCEEEccCCCCCccchh----hhccc-hhccccCcCccCcC-CCCCCCCCCcccc
Q 017975 213 LNLSVNHYLTE--LP--VGISSLVSLHHLDLSSTKVRGLPQE----LKALV-LRMLHCGSNHWPIA-EEGNVLSDDAESL 282 (363)
Q Consensus 213 L~L~~~~~~~~--lp--~~i~~L~~L~~L~l~~~~l~~lP~~----i~~L~-L~~L~~~~~~l~~l-p~~~l~~l~~~~~ 282 (363)
|++++|+..+. +| ..++.+++|++|++++|.++.+|.. +..+. |+.|+++.|.+... | ..
T Consensus 174 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p----------~~ 243 (310)
T 4glp_A 174 LDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN----------PS 243 (310)
T ss_dssp EECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC----------SC
T ss_pred EECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch----------hh
Confidence 99999943331 32 2347889999999999999877663 45666 99999999998776 4 34
Q ss_pred hhhh---ccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975 283 MKEI---HCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 283 l~~l---~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~ 354 (363)
+..+ ++|+.|++.+|.+... + ..+. + .|+.|++++|.-... +.+..+++|+.|++++|++..
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~l~~l-p-~~~~--~----~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAGLEQV-P-KGLP--A----KLRVLDLSSNRLNRA--PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSSCCCCTTCCCEECCSSCCCSC-C-SCCC--S----CCSCEECCSCCCCSC--CCTTSCCCCSCEECSSTTTSC
T ss_pred HHhccCcCcCCEEECCCCCCCch-h-hhhc--C----CCCEEECCCCcCCCC--chhhhCCCccEEECcCCCCCC
Confidence 4444 6899999999988743 3 2222 3 459999999874322 236778999999999998764
No 92
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=2.7e-15 Score=128.17 Aligned_cols=150 Identities=27% Similarity=0.356 Sum_probs=124.7
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 220 (363)
..+.+.+..++.+|... .+.++.|++++|.++.++ .+..+++|++|++++|.++.+.+..|.++++|++|+|++| .
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-K 91 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-C
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-c
Confidence 34566677777776532 268999999999999887 4788999999999999999987777999999999999999 7
Q ss_pred ccccCcc-ccCCCCCCEEEccCCCCCcc-chhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEE
Q 017975 221 LTELPVG-ISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIAL 297 (363)
Q Consensus 221 ~~~lp~~-i~~L~~L~~L~l~~~~l~~l-P~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~ 297 (363)
++.+|.. +..+++|++|++++|.++.+ |..+..+. |+.|+++.|.++.++. ..+..+++|+.|++.+|
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK---------GTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---------TTTTTCTTCCEEECCSS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH---------HHHhCCCCCCEEEeCCC
Confidence 7788765 58899999999999999987 45678888 9999999999988873 45777889999999999
Q ss_pred EeccCc
Q 017975 298 SLRGSR 303 (363)
Q Consensus 298 ~~~~~~ 303 (363)
.+....
T Consensus 163 ~~~c~c 168 (220)
T 2v9t_B 163 PFICDC 168 (220)
T ss_dssp CEECSG
T ss_pred CcCCCC
Confidence 887543
No 93
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=1.2e-15 Score=137.74 Aligned_cols=192 Identities=17% Similarity=0.143 Sum_probs=106.8
Q ss_pred eeEEecCCCCCCCc--cccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHH----------------h
Q 017975 143 KFLVRAGVGLTDAP--KIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESF----------------F 204 (363)
Q Consensus 143 ~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~----------------~ 204 (363)
..+...+..+..++ .+..+++++.|++++|.+...+.+..+++|++|++++|.++.+++.. .
T Consensus 37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~ 116 (317)
T 3o53_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC 116 (317)
T ss_dssp SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEE
T ss_pred CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCc
Confidence 34555555555543 35566677777777777766555666677777777776665544210 0
Q ss_pred cCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCCCCCccc-hhh-hccc-hhccccCcCccCcCCCCCCCCCCcc
Q 017975 205 QSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLP-QEL-KALV-LRMLHCGSNHWPIAEEGNVLSDDAE 280 (363)
Q Consensus 205 ~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lP-~~i-~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~ 280 (363)
..+++|++|++++| .++.+ |..++.+++|++|++++|.+..++ ..+ ..+. |+.|+++.|.++.+|
T Consensus 117 ~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------- 185 (317)
T 3o53_A 117 SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK---------- 185 (317)
T ss_dssp CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE----------
T ss_pred cccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc----------
Confidence 12334444444444 22222 224444455555555555554432 222 2333 555555555444433
Q ss_pred cchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975 281 SLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE 353 (363)
Q Consensus 281 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l 353 (363)
....+++|+.|++.+|.+.+..+ .+..++++ +.|++++|... ..+..+..+++|+.|++++|+..
T Consensus 186 -~~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L----~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 186 -GQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGV----TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp -CCCCCTTCCEEECCSSCCCEECG--GGGGGTTC----SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred -cccccccCCEEECCCCcCCcchh--hhcccCcc----cEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 12236777777777777664332 25555555 88888887543 33456777788888888888876
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=3.2e-15 Score=127.68 Aligned_cols=148 Identities=24% Similarity=0.340 Sum_probs=123.9
Q ss_pred eEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCCC
Q 017975 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTK 243 (363)
Q Consensus 165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~ 243 (363)
+.++..++.++.+|... .++++.|++++|.++.+++..|..+++|++|+|++| .+..+ |..+.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc
Confidence 57888889999888632 278999999999999999877999999999999999 55555 8899999999999999999
Q ss_pred CCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhhee
Q 017975 244 VRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQAL 321 (363)
Q Consensus 244 l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L 321 (363)
++.+|.. +..+. |+.|+++.|.++.++. ..+..+++|+.|++.+|.+.+..+ ..+..++++ +.|
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~---------~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L----~~L 157 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRV---------DAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAI----QTM 157 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTC----CEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCH---------HHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCC----CEE
Confidence 9999876 46788 9999999999888763 567788899999999998876543 456666666 888
Q ss_pred eecccCC
Q 017975 322 HIKDCNS 328 (363)
Q Consensus 322 ~l~~~~~ 328 (363)
++++|..
T Consensus 158 ~L~~N~~ 164 (220)
T 2v9t_B 158 HLAQNPF 164 (220)
T ss_dssp ECCSSCE
T ss_pred EeCCCCc
Confidence 8888763
No 95
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=9.7e-16 Score=138.42 Aligned_cols=181 Identities=20% Similarity=0.213 Sum_probs=122.3
Q ss_pred ccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEE
Q 017975 160 EWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHL 237 (363)
Q Consensus 160 ~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 237 (363)
.+++++.|++++|.++.++ .+..+++|++|++++|.++..++ +..+++|++|++++| .++.+|. .++|++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-ccccccC----CCCcCEE
Confidence 3468999999999999876 47899999999999999988776 899999999999999 6666552 2556666
Q ss_pred EccCCCCCccchhhhccc-hhccccCcCccCcCCC---C---CCCCC---------Ccccch-hhhccccccceEEEEec
Q 017975 238 DLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEE---G---NVLSD---------DAESLM-KEIHCLEQLNLIALSLR 300 (363)
Q Consensus 238 ~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~---~---~l~~l---------~~~~~l-~~l~~L~~L~l~~~~~~ 300 (363)
++++|.+..+|... +. |+.|+++.|.++.++. . ++..+ ..+..+ ..+++|+.|++.+|.+.
T Consensus 105 ~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 105 HAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp ECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 66666555544321 23 5555555555554432 0 11111 112333 46778888888888766
Q ss_pred cCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975 301 GSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD 358 (363)
Q Consensus 301 ~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 358 (363)
+.. ....++++ ++|++++|... ..+..+..+++|+.|++++|.+.. +|+
T Consensus 183 ~~~---~~~~l~~L----~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~-l~~ 231 (317)
T 3o53_A 183 DVK---GQVVFAKL----KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEK 231 (317)
T ss_dssp EEE---CCCCCTTC----CEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE-ECT
T ss_pred ccc---cccccccC----CEEECCCCcCC-cchhhhcccCcccEEECcCCcccc-hhh
Confidence 542 22334444 89999987643 234458889999999999998764 444
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=5.1e-15 Score=126.43 Aligned_cols=150 Identities=21% Similarity=0.264 Sum_probs=125.8
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccCC---CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ---IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~---~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 220 (363)
.+...+..++.+|.. -...++.|++++|.++.++. +..+++|++|++++|.++.+++..|.++++|++|+|++| .
T Consensus 15 ~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-R 92 (220)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-c
Confidence 556666777777642 23568899999999998843 678999999999999999999877999999999999999 5
Q ss_pred ccccCc-cccCCCCCCEEEccCCCCCcc-chhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEE
Q 017975 221 LTELPV-GISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIAL 297 (363)
Q Consensus 221 ~~~lp~-~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~ 297 (363)
++.+|. .++.+++|++|++++|.++.+ |..+..+. |+.|+++.|.++.+++ ..+..+++|+.|++.+|
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP---------GAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT---------TTTTTCTTCCEEECCSC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH---------HHhcCCCCCCEEEecCc
Confidence 666654 589999999999999999997 66788888 9999999999988752 67888999999999999
Q ss_pred EeccCcc
Q 017975 298 SLRGSRG 304 (363)
Q Consensus 298 ~~~~~~~ 304 (363)
.+....+
T Consensus 164 ~l~c~c~ 170 (220)
T 2v70_A 164 PFNCNCY 170 (220)
T ss_dssp CEECSGG
T ss_pred CCcCCCc
Confidence 9886654
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=5.8e-15 Score=126.91 Aligned_cols=148 Identities=26% Similarity=0.294 Sum_probs=124.8
Q ss_pred ceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcc-ccCCCCCCEEEccCC
Q 017975 164 VKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSST 242 (363)
Q Consensus 164 l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~ 242 (363)
.+.++.+++.+..+|.. -.++|++|++++|.++.+++..+.++++|++|+|++| .++.+|.. +..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence 45688888888888863 2389999999999999998877999999999999999 67887754 689999999999999
Q ss_pred CCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhhe
Q 017975 243 KVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQA 320 (363)
Q Consensus 243 ~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~ 320 (363)
.++.+|.. +..+. |+.|++++|.++.+| ..+..+++|+.|++.+|.+.+..+ ..+..++++ +.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp----------~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L----~~ 163 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELP----------RGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSL----TH 163 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCC----------TTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTC----CE
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccC----------cccccCCCCCEEECCCCcCCccCH-HHHhCCCCC----CE
Confidence 99999875 57788 999999999999887 677889999999999998875543 556666666 88
Q ss_pred eeecccCC
Q 017975 321 LHIKDCNS 328 (363)
Q Consensus 321 L~l~~~~~ 328 (363)
|++++|..
T Consensus 164 L~l~~N~~ 171 (229)
T 3e6j_A 164 AYLFGNPW 171 (229)
T ss_dssp EECTTSCB
T ss_pred EEeeCCCc
Confidence 99998764
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=2.6e-15 Score=138.14 Aligned_cols=170 Identities=24% Similarity=0.297 Sum_probs=120.9
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccCC--CC-CCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IP-TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 220 (363)
.+.+.+..++.+|.. -...++.|++++|.++.++. +. .+++|++|++++|.++.+++..|.++++|++|+|++| .
T Consensus 22 ~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-H 99 (361)
T ss_dssp EEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-c
Confidence 456666667766642 23468888888888888764 44 7888888888888888888777888888888888888 5
Q ss_pred ccccCc-cccCCCCCCEEEccCCCCCcc-chhhhccc-hhccccCcCccCcCCCCCCCCCCcccch---hhhccccccce
Q 017975 221 LTELPV-GISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLM---KEIHCLEQLNL 294 (363)
Q Consensus 221 ~~~lp~-~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l---~~l~~L~~L~l 294 (363)
++.+|. .+..+++|++|+|++|.+..+ |..+..+. |+.|+++.|.++.+|. ..+ ..+++|+.|++
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~---------~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV---------ELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG---------GGTC----CTTCCEEEC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH---------HHhcCcccCCcCCEEEC
Confidence 666654 578888888888888888877 55677777 8888888888887773 222 45777888888
Q ss_pred EEEEeccCcccccccCCCchhhhhheeeecccC
Q 017975 295 IALSLRGSRGVENFLKFPKLQNITQALHIKDCN 327 (363)
Q Consensus 295 ~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~ 327 (363)
.+|.+... +...+..++.+ .++.|++++|.
T Consensus 171 ~~N~l~~l-~~~~~~~l~~~--~l~~l~l~~N~ 200 (361)
T 2xot_A 171 SSNKLKKL-PLTDLQKLPAW--VKNGLYLHNNP 200 (361)
T ss_dssp CSSCCCCC-CHHHHHHSCHH--HHTTEECCSSC
T ss_pred CCCCCCcc-CHHHhhhccHh--hcceEEecCCC
Confidence 87777643 22344444432 13667777765
No 99
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=1.5e-14 Score=141.59 Aligned_cols=144 Identities=22% Similarity=0.245 Sum_probs=113.1
Q ss_pred ceeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975 142 EKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 221 (363)
...+.+.+..++.+|.... ++++.|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++| .+
T Consensus 42 l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l 113 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PL 113 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CC
T ss_pred CcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cC
Confidence 4567778888887776333 799999999999999987 68999999999999998876 6899999999999 78
Q ss_pred cccCccccCCCCCCEEEccCCCCCccchhhhccchhccccCcCccCcCCC--CCCCCC--------Ccccchhhhccccc
Q 017975 222 TELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEE--GNVLSD--------DAESLMKEIHCLEQ 291 (363)
Q Consensus 222 ~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~L~~L~~~~~~l~~lp~--~~l~~l--------~~~~~l~~l~~L~~ 291 (363)
+.+|. .+.+|++|++++|+++.+|..+.+ |+.|++++|.++.+|. .++..+ .+| ..+++|+.
T Consensus 114 ~~l~~---~l~~L~~L~L~~N~l~~lp~~l~~--L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~ 185 (622)
T 3g06_A 114 THLPA---LPSGLCKLWIFGNQLTSLPVLPPG--LQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP---MLPSGLQE 185 (622)
T ss_dssp CCCCC---CCTTCCEEECCSSCCSCCCCCCTT--CCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCE
T ss_pred CCCCC---CCCCcCEEECCCCCCCcCCCCCCC--CCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcE
Confidence 88886 678999999999999999986422 7888889999988875 333322 111 23366777
Q ss_pred cceEEEEecc
Q 017975 292 LNLIALSLRG 301 (363)
Q Consensus 292 L~l~~~~~~~ 301 (363)
|++.+|.+.+
T Consensus 186 L~Ls~N~l~~ 195 (622)
T 3g06_A 186 LSVSDNQLAS 195 (622)
T ss_dssp EECCSSCCSC
T ss_pred EECCCCCCCC
Confidence 7777666554
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=4.4e-15 Score=133.63 Aligned_cols=183 Identities=17% Similarity=0.105 Sum_probs=137.9
Q ss_pred cccceEEEeeccccccc-CC-C--CCCCCccEEEeccCCccccc----hHHhcCCCCCCEEEcccCCCccccCccccCCC
Q 017975 161 WEGVKRISLMENEIQSL-PQ-I--PTCPRLQTLLLEYNHIEEIT----ESFFQSLPSLRVLNLSVNHYLTELPVGISSLV 232 (363)
Q Consensus 161 ~~~l~~L~l~~~~~~~l-~~-~--~~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~ 232 (363)
.+++++|++++|.+... |. + ..+++|++|++++|.+.... ...+..+++|++|++++|......|..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 45799999999998764 32 3 78999999999999987632 23356899999999999954444557899999
Q ss_pred CCCEEEccCCCCCc---cchh--hhccc-hhccccCcCccCcCCCCCCCCCCccc-chhhhccccccceEEEEeccCccc
Q 017975 233 SLHHLDLSSTKVRG---LPQE--LKALV-LRMLHCGSNHWPIAEEGNVLSDDAES-LMKEIHCLEQLNLIALSLRGSRGV 305 (363)
Q Consensus 233 ~L~~L~l~~~~l~~---lP~~--i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~-~l~~l~~L~~L~l~~~~~~~~~~~ 305 (363)
+|++|++++|++.. +|.. +..++ |+.|+++.|+++.+|. .+. .+..+++|+.|++++|.+.+..|
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-------~~~~l~~~l~~L~~L~Ls~N~l~~~~p- 241 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-------VCAALAAAGVQPHSLDLSHNSLRATVN- 241 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-------HHHHHHHHTCCCSSEECTTSCCCCCCC-
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-------HHHHHHhcCCCCCEEECCCCCCCccch-
Confidence 99999999999765 4433 36777 9999999999876651 112 25788999999999999987654
Q ss_pred ccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCc
Q 017975 306 ENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDW 355 (363)
Q Consensus 306 ~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~ 355 (363)
..+..+..+ ..|++|++++|... ..+..+. ++|+.|++++|.+...
T Consensus 242 ~~~~~~~~~-~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 242 PSAPRCMWS-SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp SCCSSCCCC-TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred hhHHhccCc-CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC
Confidence 334444311 23499999998753 3244443 7999999999998763
No 101
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.57 E-value=1.6e-15 Score=148.72 Aligned_cols=128 Identities=17% Similarity=0.291 Sum_probs=105.7
Q ss_pred CccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccccc-c----ccchHHHHHHHHhhcCCCCChhhhHHHhHhcCC
Q 017975 1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASK-F----EDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLF 75 (363)
Q Consensus 1 Iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~-~----~~~~~~i~~~L~~sy~~L~~~~lk~cfl~~s~F 75 (363)
|+++|+|+||||+.+|+.|+.+ ...|+.+++.+...... + ......+..++..||+.||+ +.|.||+++|+|
T Consensus 313 i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f 389 (591)
T 1z6t_A 313 IIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSIL 389 (591)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGC
T ss_pred HHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHcccc
Confidence 5789999999999999999874 34799998888765422 1 11223789999999999999 899999999999
Q ss_pred CCCcccChHHHHHHHHHhCCccCcCHHHHHHHHHHhhcccC----CCCceeechhHHHHHHHHh
Q 017975 76 PEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEE----GGDHVKMHDMIRDMALWIA 135 (363)
Q Consensus 76 p~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~L~~rsli~~----~~~~~~mhdl~~~~~~~i~ 135 (363)
|+|+.|+.+.++.+|.+++. .+..++++|+++|||+. ....|+||++++++++...
T Consensus 390 ~~~~~i~~~~l~~l~~~~~~----~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 390 QKDVKVPTKVLCILWDMETE----EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp CTTCCEEHHHHHHHHTCCHH----HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred CCCCccCHHHHHHHhccCHH----HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 99999999999999965421 27788999999999986 2347999999999998763
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=6.4e-15 Score=125.81 Aligned_cols=147 Identities=18% Similarity=0.275 Sum_probs=120.9
Q ss_pred eEEEeecccccccCCCCCCCCccEEEeccCCccccc-hHHhcCCCCCCEEEcccCCCccccCc-cccCCCCCCEEEccCC
Q 017975 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEIT-ESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSST 242 (363)
Q Consensus 165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~ 242 (363)
+.++++++.++.+|.. -.+.+++|++++|.++.++ ...|..+++|++|++++| .++.+|. .++.+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC
Confidence 5899999999998852 2456799999999999884 455889999999999999 6766654 7999999999999999
Q ss_pred CCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhhe
Q 017975 243 KVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQA 320 (363)
Q Consensus 243 ~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~ 320 (363)
.++.+|.. +..+. |+.|+++.|.++.+++ ..+..+++|+.|++.+|.+.+..+ ..+..++++ +.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L----~~ 157 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGN---------DSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSL----ST 157 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCT---------TSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTC----CE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECH---------hHcCCCccCCEEECCCCcCCEECH-HHhcCCCCC----CE
Confidence 99998764 78888 9999999999887753 567788899999998888876544 556666666 88
Q ss_pred eeecccC
Q 017975 321 LHIKDCN 327 (363)
Q Consensus 321 L~l~~~~ 327 (363)
|++++|.
T Consensus 158 L~L~~N~ 164 (220)
T 2v70_A 158 LNLLANP 164 (220)
T ss_dssp EECCSCC
T ss_pred EEecCcC
Confidence 8888876
No 103
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.56 E-value=3.1e-14 Score=134.80 Aligned_cols=100 Identities=24% Similarity=0.401 Sum_probs=47.1
Q ss_pred ccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccC
Q 017975 162 EGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSS 241 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 241 (363)
++++.|++++|.++.++... ++|++|++++|.++.+| . ++++++|++|++++| .++.+|..+ .+|++|++++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCS
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcC
Confidence 34444444444444433221 34555555555555544 2 455555555555555 344444332 2455555555
Q ss_pred CCCCccchhhhccc-hhccccCcCccCcCC
Q 017975 242 TKVRGLPQELKALV-LRMLHCGSNHWPIAE 270 (363)
Q Consensus 242 ~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp 270 (363)
|.++.+| +++.++ |+.|+++.|.++.+|
T Consensus 183 n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~ 211 (454)
T 1jl5_A 183 NQLEELP-ELQNLPFLTAIYADNNSLKKLP 211 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSSCCSSCC
T ss_pred CcCCcCc-cccCCCCCCEEECCCCcCCcCC
Confidence 5555544 344444 555555555444443
No 104
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.55 E-value=2.1e-14 Score=136.03 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=19.2
Q ss_pred CCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccch
Q 017975 209 SLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQ 249 (363)
Q Consensus 209 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~ 249 (363)
+|++|++++| .++.+| .++.+++|++|++++|.++.+|.
T Consensus 216 ~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 216 SLESIVAGNN-ILEELP-ELQNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp TCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCCS
T ss_pred cccEEECcCC-cCCccc-ccCCCCCCCEEECCCCcCCcccc
Confidence 3444444444 333444 35555555555555555555543
No 105
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=1e-15 Score=139.16 Aligned_cols=181 Identities=22% Similarity=0.283 Sum_probs=121.8
Q ss_pred cccccccceEEEeecccccc--cC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc--ccCccccCC
Q 017975 157 KIEEWEGVKRISLMENEIQS--LP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT--ELPVGISSL 231 (363)
Q Consensus 157 ~~~~~~~l~~L~l~~~~~~~--l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~--~lp~~i~~L 231 (363)
....++++++|++++|.+.. ++ .+..+++|++|++++|.+....+..+..+++|++|++++|..++ .+|..+..+
T Consensus 88 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 88 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167 (336)
T ss_dssp SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence 34566788889988887754 33 35678888888888888776555557888888888888885555 367678888
Q ss_pred CCCCEEEccCC-CCCc--cchhhhccc--hhccccCcCc--cCcCCCCCCCCCCcccchhhhccccccceEEEE-eccCc
Q 017975 232 VSLHHLDLSST-KVRG--LPQELKALV--LRMLHCGSNH--WPIAEEGNVLSDDAESLMKEIHCLEQLNLIALS-LRGSR 303 (363)
Q Consensus 232 ~~L~~L~l~~~-~l~~--lP~~i~~L~--L~~L~~~~~~--l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~-~~~~~ 303 (363)
++|++|++++| .++. +|..+..++ |+.|++++|. ++. ...+..+..+++|+.|++.+|. +.+.
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~--------~~l~~~~~~~~~L~~L~l~~~~~l~~~- 238 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK--------SDLSTLVRRCPNLVHLDLSDSVMLKND- 238 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH--------HHHHHHHHHCTTCSEEECTTCTTCCGG-
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH--------HHHHHHHhhCCCCCEEeCCCCCcCCHH-
Confidence 88888888888 8875 566666665 7777777763 211 0123455667777777777776 3322
Q ss_pred ccccccCCCchhhhhheeeecccCC-CCcCCcccccccccceeeeccC
Q 017975 304 GVENFLKFPKLQNITQALHIKDCNS-LPLNLLHLANMEHLQLFSIWDS 350 (363)
Q Consensus 304 ~~~~l~~l~~l~~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~c 350 (363)
....+..++++ ++|++++|.. .+..+..+.++++|+.|++++|
T Consensus 239 ~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 239 CFQEFFQLNYL----QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGCTTC----CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHhCCCCC----CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 22345555554 7777777753 2222335666777777777777
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=1.3e-14 Score=133.50 Aligned_cols=124 Identities=23% Similarity=0.277 Sum_probs=58.7
Q ss_pred EEEeecccccccCCCCCCCCccEEEeccCCccccchHHhc-CCCCCCEEEcccCCCccccC-ccccCCCCCCEEEccCCC
Q 017975 166 RISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQ-SLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTK 243 (363)
Q Consensus 166 ~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~ 243 (363)
.++++++.++.+|.. -.+.++.|++++|.++.+++..+. ++++|++|+|++| .+..+| ..+..+++|++|+|++|.
T Consensus 22 ~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc
Confidence 444445555444431 123345555555555555444343 4555555555555 333333 235555555555555555
Q ss_pred CCccch-hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEec
Q 017975 244 VRGLPQ-ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR 300 (363)
Q Consensus 244 l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~ 300 (363)
++.+|. .+..+. |+.|+++.|.+..++. ..+..+++|+.|++.+|.+.
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~---------~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDR---------NAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECT---------TTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECH---------HHhCCcccCCEEECCCCcCC
Confidence 555443 234444 5555555555444431 33444555555555555444
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=2.9e-14 Score=130.52 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=92.5
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCcc-ccchHHhcCCCCCCEE-EcccCC
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIE-EITESFFQSLPSLRVL-NLSVNH 219 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L-~L~~~~ 219 (363)
.+.+.+..++.+|.-- .++++.|++++|.++.+|. +.++++|++|++++|.+. .+++..|.++++|+.+ .+++|
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N- 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN- 90 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET-
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC-
Confidence 4667777788777522 3689999999999999984 789999999999999874 4677778889887764 45555
Q ss_pred Ccccc-CccccCCCCCCEEEccCCCCCccchhh--hccchhcccc-CcCccCcCCC
Q 017975 220 YLTEL-PVGISSLVSLHHLDLSSTKVRGLPQEL--KALVLRMLHC-GSNHWPIAEE 271 (363)
Q Consensus 220 ~~~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i--~~L~L~~L~~-~~~~l~~lp~ 271 (363)
.++.+ |..+..+++|++|++++|.++.+|... ..+.+..+++ +++.+..+|.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~ 146 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc
Confidence 67776 567899999999999999998877532 2222444433 3455665553
No 108
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=1.7e-14 Score=118.70 Aligned_cols=137 Identities=16% Similarity=0.210 Sum_probs=112.5
Q ss_pred ccccccccceEEEeecccccccCCCCCCC-CccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccc-cCCCC
Q 017975 156 PKIEEWEGVKRISLMENEIQSLPQIPTCP-RLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSLVS 233 (363)
Q Consensus 156 ~~~~~~~~l~~L~l~~~~~~~l~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i-~~L~~ 233 (363)
+....+.+++.|++++|.++.++.+..+. +|++|++++|.++.+ +. +..+++|++|++++| .++.+|..+ +.+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG-FPLLRRLKTLLVNNN-RICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CC-CCCCSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cc-cccCCCCCEEECCCC-cccccCcchhhcCCC
Confidence 33445678999999999999888877666 999999999999887 33 899999999999999 778888665 89999
Q ss_pred CCEEEccCCCCCccch--hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975 234 LHHLDLSSTKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG 301 (363)
Q Consensus 234 L~~L~l~~~~l~~lP~--~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~ 301 (363)
|++|++++|.+..+|. .+..++ |+.|+++.|.+..+|. .....+..+++|+.|++..|....
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~------~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH------YRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT------HHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh------HHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999999999987 788888 9999999999887772 000137888899999988887654
No 109
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=2.9e-15 Score=136.19 Aligned_cols=178 Identities=18% Similarity=0.141 Sum_probs=140.9
Q ss_pred ccceEEEeeccccccc-CCCCCCCCccEEEeccCCcccc-chHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017975 162 EGVKRISLMENEIQSL-PQIPTCPRLQTLLLEYNHIEEI-TESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDL 239 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l-~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 239 (363)
+.++.+++.+|.+... +.+..+++|++|++++|.+... .+..+..+++|++|++++|......|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 6889999999988775 4577899999999999998753 4455899999999999999544467889999999999999
Q ss_pred cCC-CCCc--cchhhhccc-hhccccCcC-ccCcCCCCCCCCCCcccchhhhc-cccccceEEEE--eccCcccccccCC
Q 017975 240 SST-KVRG--LPQELKALV-LRMLHCGSN-HWPIAEEGNVLSDDAESLMKEIH-CLEQLNLIALS--LRGSRGVENFLKF 311 (363)
Q Consensus 240 ~~~-~l~~--lP~~i~~L~-L~~L~~~~~-~l~~lp~~~l~~l~~~~~l~~l~-~L~~L~l~~~~--~~~~~~~~~l~~l 311 (363)
++| .++. +|..+..++ |+.|+++.| .++.. ..+..+..++ +|+.|++.+|. +....-...+..+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~--------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~ 221 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK--------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 221 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH--------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH--------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC
Confidence 999 7884 788888888 999999988 76531 1236688899 99999998884 3322112334555
Q ss_pred CchhhhhheeeecccCCC-CcCCcccccccccceeeeccCC
Q 017975 312 PKLQNITQALHIKDCNSL-PLNLLHLANMEHLQLFSIWDSN 351 (363)
Q Consensus 312 ~~l~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~c~ 351 (363)
+++ ++|++++|..+ ...+..+..+++|+.|++++|.
T Consensus 222 ~~L----~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 222 PNL----VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTC----SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCC----CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 665 99999999843 3446678899999999999996
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=2e-14 Score=117.33 Aligned_cols=130 Identities=23% Similarity=0.242 Sum_probs=87.7
Q ss_pred ccceEEEeeccccc--ccCCC-CCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccc-cCccccCCCCCCEE
Q 017975 162 EGVKRISLMENEIQ--SLPQI-PTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE-LPVGISSLVSLHHL 237 (363)
Q Consensus 162 ~~l~~L~l~~~~~~--~l~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~-lp~~i~~L~~L~~L 237 (363)
++++.|++++|.++ .+|.. ..+++|++|++++|.++.+ . .+..+++|++|++++| .+.. +|..++.+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-S-NLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-S-SCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-h-hhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence 56777788777776 66653 6777778888887777766 2 3777777888888877 4444 66666667778888
Q ss_pred EccCCCCCccc--hhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEec
Q 017975 238 DLSSTKVRGLP--QELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR 300 (363)
Q Consensus 238 ~l~~~~l~~lP--~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~ 300 (363)
++++|.++.+| ..+..++ |+.|+++.|.+..+|. .....+..+++|+.|++.+|...
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~------~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND------YRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT------HHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH------HHHHHHHhCccCcEecCCCCChh
Confidence 88877777765 5666666 7777777777666551 00014556666666666665543
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=2.3e-13 Score=110.92 Aligned_cols=129 Identities=26% Similarity=0.300 Sum_probs=111.2
Q ss_pred ceeEEecCCCCC--CCccc-cccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccC
Q 017975 142 EKFLVRAGVGLT--DAPKI-EEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN 218 (363)
Q Consensus 142 ~~~~~~~~~~~~--~~~~~-~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~ 218 (363)
-..+...+..+. .++.. ..+++++.|++++|.++.++.+..+++|++|++++|.+...++..+.++++|++|++++|
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 105 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC
Confidence 345666666665 55543 788999999999999999988899999999999999999855665788999999999999
Q ss_pred CCccccC--ccccCCCCCCEEEccCCCCCccch----hhhccc-hhccccCcCccCcCCC
Q 017975 219 HYLTELP--VGISSLVSLHHLDLSSTKVRGLPQ----ELKALV-LRMLHCGSNHWPIAEE 271 (363)
Q Consensus 219 ~~~~~lp--~~i~~L~~L~~L~l~~~~l~~lP~----~i~~L~-L~~L~~~~~~l~~lp~ 271 (363)
.++.+| ..++.+++|++|++++|.+..+|. .+..++ |+.|+++.|.+.++|.
T Consensus 106 -~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 106 -KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp -SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred -ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 788876 789999999999999999999987 788888 9999999999888874
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=5.4e-14 Score=112.30 Aligned_cols=125 Identities=25% Similarity=0.239 Sum_probs=101.0
Q ss_pred ccceEEEeeccccc--ccCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccc-cCccccCCCCCCEE
Q 017975 162 EGVKRISLMENEIQ--SLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE-LPVGISSLVSLHHL 237 (363)
Q Consensus 162 ~~l~~L~l~~~~~~--~l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~-lp~~i~~L~~L~~L 237 (363)
++++.|++++|.++ .+|. +..+++|++|++++|.++.+ ..++.+++|++|++++| .++. +|..++.+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEE
Confidence 68999999999988 6765 47889999999999998887 33889999999999999 5555 88777889999999
Q ss_pred EccCCCCCccc--hhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceE
Q 017975 238 DLSSTKVRGLP--QELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLI 295 (363)
Q Consensus 238 ~l~~~~l~~lP--~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~ 295 (363)
++++|.++.+| ..+..++ |+.|+++.|.++.+|. .....+..+++|+.|++.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND------YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT------HHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH------HHHHHHHHCCCcccccCC
Confidence 99999999875 7788888 9999999998877761 001257777888877754
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=3.3e-13 Score=130.63 Aligned_cols=158 Identities=19% Similarity=0.217 Sum_probs=126.7
Q ss_pred ccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccC
Q 017975 162 EGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSS 241 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 241 (363)
.+++.|++++|.++.+|... +++|++|++++|.++.+| ..+++|++|++++| .++.+|. +++ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 38999999999999988632 489999999999999887 45799999999999 7888997 776 999999999
Q ss_pred CCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhhe
Q 017975 242 TKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQA 320 (363)
Q Consensus 242 ~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~ 320 (363)
|.++.+|. .+. |+.|++++|.++.+| . .+++|+.|++.+|.+.+ .+. +. ..|+.
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp----------~---~l~~L~~L~Ls~N~L~~-lp~--l~------~~L~~ 184 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTMLP----------E---LPTSLEVLSVRNNQLTF-LPE--LP------ESLEA 184 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSCCC----------C---CCTTCCEEECCSSCCSC-CCC--CC------TTCCE
T ss_pred CcCCCCCC---cCccccEEeCCCCccCcCC----------C---cCCCcCEEECCCCCCCC-cch--hh------CCCCE
Confidence 99999998 466 999999999998887 2 46789999999998876 332 33 34599
Q ss_pred eeecccCCCCcCCccccccccc-------ceeeeccCCCCCcccc
Q 017975 321 LHIKDCNSLPLNLLHLANMEHL-------QLFSIWDSNLEDWNVD 358 (363)
Q Consensus 321 L~l~~~~~~~~~~~~l~~l~~L-------~~L~l~~c~~l~~~~~ 358 (363)
|++++|... ..+. +.. +| +.|++++|.+.. +|+
T Consensus 185 L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~ 224 (571)
T 3cvr_A 185 LDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPE 224 (571)
T ss_dssp EECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCG
T ss_pred EECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCH
Confidence 999998643 3233 443 66 999999998875 554
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=1.9e-16 Score=153.85 Aligned_cols=107 Identities=19% Similarity=0.245 Sum_probs=73.3
Q ss_pred CCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCC
Q 017975 233 SLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKF 311 (363)
Q Consensus 233 ~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 311 (363)
.|++|++++|.++.+|. ++.+. |+.|+++.|.++.+| ..++.+++|+.|++++|.+.+. | .+..+
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp----------~~~~~l~~L~~L~Ls~N~l~~l-p--~l~~l 507 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALP----------PALAALRCLEVLQASDNALENV-D--GVANL 507 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCC----------GGGGGCTTCCEEECCSSCCCCC-G--GGTTC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccc----------hhhhcCCCCCEEECCCCCCCCC-c--ccCCC
Confidence 46777777777777775 77777 777777777776666 5677777777777777776652 2 45666
Q ss_pred CchhhhhheeeecccCCCCcC-CcccccccccceeeeccCCCCCccc
Q 017975 312 PKLQNITQALHIKDCNSLPLN-LLHLANMEHLQLFSIWDSNLEDWNV 357 (363)
Q Consensus 312 ~~l~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~c~~l~~~~ 357 (363)
++| +.|++++|...... +..+..+++|+.|++++|++...+|
T Consensus 508 ~~L----~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 508 PRL----QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SSC----CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCC----cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 665 77777776543332 5567777777777777777665544
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=1.5e-14 Score=144.55 Aligned_cols=149 Identities=21% Similarity=0.128 Sum_probs=107.3
Q ss_pred CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhc
Q 017975 180 IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRM 258 (363)
Q Consensus 180 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~ 258 (363)
+..+++|+.|++++|.+..+++. +.++++|++|+|++| .++.+|..++.|++|++|+|++|.++.+|.+++.|. |+.
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 56788899999999999888877 558999999999999 677899889999999999999999999999999988 999
Q ss_pred cccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCccccc
Q 017975 259 LHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLAN 338 (363)
Q Consensus 259 L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~ 338 (363)
|+++.|.++.+| ..++.+++|+.|++.+|.+.+..+ ..+... ......+++++|......
T Consensus 298 L~L~~N~l~~lp----------~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~---~~~~~~l~l~~N~l~~~~------ 357 (727)
T 4b8c_D 298 FYFFDNMVTTLP----------WEFGNLCNLQFLGVEGNPLEKQFL-KILTEK---SVTGLIFYLRDNRPEIPL------ 357 (727)
T ss_dssp EECCSSCCCCCC----------SSTTSCTTCCCEECTTSCCCSHHH-HHHHHH---HHHHHHHHHHHCCCCCCC------
T ss_pred EECCCCCCCccC----------hhhhcCCCccEEeCCCCccCCCCh-HHHhhc---chhhhHHhhccCcccCcC------
Confidence 999999888877 568888999999999998876544 222221 111234677776543222
Q ss_pred ccccceeeeccC
Q 017975 339 MEHLQLFSIWDS 350 (363)
Q Consensus 339 l~~L~~L~l~~c 350 (363)
+..|+.|++++|
T Consensus 358 p~~l~~l~l~~n 369 (727)
T 4b8c_D 358 PHERRFIEINTD 369 (727)
T ss_dssp CCC---------
T ss_pred ccccceeEeecc
Confidence 235566666666
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=2e-14 Score=143.71 Aligned_cols=174 Identities=20% Similarity=0.161 Sum_probs=114.6
Q ss_pred ccccccceEEEeecccccccC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCE
Q 017975 158 IEEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHH 236 (363)
Q Consensus 158 ~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 236 (363)
+..+..++.|++++|.+..+| .+..+++|++|+|++|.++.+|+. ++++++|++|+|++| .++.+|..++.|++|++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhhcCCCCCCE
Confidence 456688999999999999887 467899999999999999988876 899999999999999 67799999999999999
Q ss_pred EEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhcc-ccccceEEEEeccCcccccccCCCch
Q 017975 237 LDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHC-LEQLNLIALSLRGSRGVENFLKFPKL 314 (363)
Q Consensus 237 L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~~l 314 (363)
|+|++|.+..+|.+++.|. |+.|+++.|.+...+ |..+..+.. +..|++.+|.+.+..+ . .
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~---------p~~~~~~~~~~~~l~l~~N~l~~~~p-~------~- 360 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF---------LKILTEKSVTGLIFYLRDNRPEIPLP-H------E- 360 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHH---------HHHHHHHHHHHHHHHHHHCCCCCCCC-C------C-
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCCCccCCCC---------hHHHhhcchhhhHHhhccCcccCcCc-c------c-
Confidence 9999999999999999999 999999999987543 244444332 2346677777765544 2 1
Q ss_pred hhhhheeeecccCC-------CCcC-CcccccccccceeeeccCCCC
Q 017975 315 QNITQALHIKDCNS-------LPLN-LLHLANMEHLQLFSIWDSNLE 353 (363)
Q Consensus 315 ~~~L~~L~l~~~~~-------~~~~-~~~l~~l~~L~~L~l~~c~~l 353 (363)
++.|+++.+.. ++.. ...+.++..+....++.|-..
T Consensus 361 ---l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 361 ---RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------------------------------CCC
T ss_pred ---cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 25555655421 1111 122344555566666666653
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=3.2e-13 Score=123.60 Aligned_cols=185 Identities=14% Similarity=0.114 Sum_probs=131.5
Q ss_pred eEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCc-cccCCCCCCE-EEccCC
Q 017975 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHH-LDLSST 242 (363)
Q Consensus 165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~-L~l~~~ 242 (363)
+.++.++++++++|.-. .++++.|++++|.++.++++.|.++++|++|+|++|...+.+|. .+.++++|++ +.+.+|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 46777888899888522 46899999999999999998899999999999999965666764 5788988876 566678
Q ss_pred CCCccc-hhhhccc-hhccccCcCccCcCCCC---CCCCC------------Ccc-cchhhh-ccccccceEEEEeccCc
Q 017975 243 KVRGLP-QELKALV-LRMLHCGSNHWPIAEEG---NVLSD------------DAE-SLMKEI-HCLEQLNLIALSLRGSR 303 (363)
Q Consensus 243 ~l~~lP-~~i~~L~-L~~L~~~~~~l~~lp~~---~l~~l------------~~~-~~l~~l-~~L~~L~l~~~~~~~~~ 303 (363)
+++.+| ..+..++ |+.|++++|+++.+|.. ....+ .++ ..+..+ ..++.|++.+|.+....
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 999985 4578888 99999999999988861 11111 111 122333 35677777777765432
Q ss_pred ccccccCCCchhhhhheeeecccCCCCcCC-cccccccccceeeeccCCCCCcc
Q 017975 304 GVENFLKFPKLQNITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWN 356 (363)
Q Consensus 304 ~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~c~~l~~~ 356 (363)
+ . .....++ +.|++.+++.+...+ ..+..+++|++|++++|++....
T Consensus 171 ~-~-~f~~~~L----~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 171 N-S-AFNGTQL----DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp T-T-SSTTEEE----EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred h-h-hccccch----hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 2 2 2223333 788887766544433 35788888888888888765433
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.43 E-value=1.8e-13 Score=114.23 Aligned_cols=129 Identities=21% Similarity=0.317 Sum_probs=87.4
Q ss_pred eEEEeecccccccCCCCCCCCccEEEeccCCccccchH-HhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCC
Q 017975 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITES-FFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSST 242 (363)
Q Consensus 165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~ 242 (363)
+.++++++.++.+|... ..++++|++++|.+..+++. .+..+++|++|+|++| .++.+ |..++.+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC
Confidence 56677777777766521 23777777777777776653 3677777777777777 44443 667777777777777777
Q ss_pred CCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcc
Q 017975 243 KVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRG 304 (363)
Q Consensus 243 ~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~ 304 (363)
.++.+|.. +..+. |+.|+++.|.++.++ |..+..+++|+.|++.+|.+.+..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVM---------PGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEEC---------TTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeC---------HHHhhcCCCCCEEEeCCCCccCcCc
Confidence 77776543 66666 777777777776553 2556667777777777777765543
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=3.3e-13 Score=110.94 Aligned_cols=124 Identities=28% Similarity=0.288 Sum_probs=109.6
Q ss_pred eeEEecCCCCCCCccccccc-cceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975 143 KFLVRAGVGLTDAPKIEEWE-GVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 221 (363)
..+...+..+..++.+..+. +++.|++++|.++.++.+..+++|++|++++|.++.+++..+..+++|++|++++| .+
T Consensus 22 ~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i 100 (176)
T 1a9n_A 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SL 100 (176)
T ss_dssp EEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CC
T ss_pred eEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cC
Confidence 45667777777777777666 99999999999999988999999999999999999998886799999999999999 78
Q ss_pred cccCc--cccCCCCCCEEEccCCCCCccchh----hhccc-hhccccCcCccC
Q 017975 222 TELPV--GISSLVSLHHLDLSSTKVRGLPQE----LKALV-LRMLHCGSNHWP 267 (363)
Q Consensus 222 ~~lp~--~i~~L~~L~~L~l~~~~l~~lP~~----i~~L~-L~~L~~~~~~l~ 267 (363)
+.+|. .++.+++|++|++++|.+..+|.. +..++ |+.|+++.|...
T Consensus 101 ~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 101 VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88887 899999999999999999999885 78888 999888877643
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=2.8e-13 Score=131.55 Aligned_cols=107 Identities=23% Similarity=0.236 Sum_probs=74.9
Q ss_pred CccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCc
Q 017975 185 RLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGS 263 (363)
Q Consensus 185 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~ 263 (363)
.|++|++++|.++.+|. ++.+++|++|+|++| .++.+|..++.+++|++|+|++|.++.+| .++.++ |+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 46777777777777654 677777777777777 56677777777777777777777777777 677777 77777777
Q ss_pred CccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCc
Q 017975 264 NHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSR 303 (363)
Q Consensus 264 ~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~ 303 (363)
|.++.++ .|..+..+++|+.|++.+|.+.+..
T Consensus 518 N~l~~~~--------~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 518 NRLQQSA--------AIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp SCCCSSS--------TTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCCC--------CcHHHhcCCCCCEEEecCCcCCCCc
Confidence 7766651 1256677777777777777766543
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.40 E-value=5.4e-13 Score=109.70 Aligned_cols=129 Identities=24% Similarity=0.339 Sum_probs=91.7
Q ss_pred ceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcc-ccCCCCCCEEEccCC
Q 017975 164 VKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSST 242 (363)
Q Consensus 164 l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~ 242 (363)
.+.+++.++.++.+|. ...++|+.|++++|.++.+++..+..+++|++|++++| .++.+|.. ++.+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC
Confidence 3566777777777663 23367888888888877777766777888888888888 56666544 577888888888888
Q ss_pred CCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCc
Q 017975 243 KVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSR 303 (363)
Q Consensus 243 ~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~ 303 (363)
.++.+|.. +..+. |+.|+++.|.++.+|. ..+..+++|+.|++.+|.+.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---------~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPD---------GIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---------TTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCH---------HHhcCCcccCEEEecCCCeeccC
Confidence 88877664 46666 7888888887777663 34566777888888777766543
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=7.4e-13 Score=110.53 Aligned_cols=127 Identities=21% Similarity=0.316 Sum_probs=93.8
Q ss_pred eEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEccCCC
Q 017975 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTK 243 (363)
Q Consensus 165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~ 243 (363)
+.++++++.++.+|.. -.++|++|++++|.++.+|.. +.++++|++|++++| .++.++ ..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 4577777777777742 235788888888888877744 788888888888888 555554 457888888888888888
Q ss_pred CCccch-hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCc
Q 017975 244 VRGLPQ-ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSR 303 (363)
Q Consensus 244 l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~ 303 (363)
++.+|. .+..+. |+.|+++.|.++.+|. ..+..+++|+.|++.+|.+....
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~---------~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPE---------GAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCT---------TTTTTCTTCCEEECCSSCEECSG
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeCh---------hhhhcCccccEEEeCCCCeecCC
Confidence 888764 577777 8888888888877763 35667788888888888776543
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=1.3e-12 Score=104.09 Aligned_cols=120 Identities=27% Similarity=0.305 Sum_probs=100.3
Q ss_pred ceeEEecCCCCC--CCcc-ccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccC
Q 017975 142 EKFLVRAGVGLT--DAPK-IEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN 218 (363)
Q Consensus 142 ~~~~~~~~~~~~--~~~~-~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~ 218 (363)
-..+...+..+. .++. +..+++++.|++++|.++.++.+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence 345666666665 4443 4678999999999999999988899999999999999999855665888999999999999
Q ss_pred CCccccC--ccccCCCCCCEEEccCCCCCccch----hhhccc-hhccccC
Q 017975 219 HYLTELP--VGISSLVSLHHLDLSSTKVRGLPQ----ELKALV-LRMLHCG 262 (363)
Q Consensus 219 ~~~~~lp--~~i~~L~~L~~L~l~~~~l~~lP~----~i~~L~-L~~L~~~ 262 (363)
.++.+| ..++.+++|++|++++|.++.+|. .+..++ |+.|+++
T Consensus 99 -~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 99 -KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred -cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 677765 789999999999999999999876 577777 8877654
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=1.2e-14 Score=134.81 Aligned_cols=188 Identities=20% Similarity=0.209 Sum_probs=117.4
Q ss_pred ccccceEEEeecccccc-----cC-CCCCCCCccEEEeccCCccccchHH----hcCC---------CCCCEEEcccCCC
Q 017975 160 EWEGVKRISLMENEIQS-----LP-QIPTCPRLQTLLLEYNHIEEITESF----FQSL---------PSLRVLNLSVNHY 220 (363)
Q Consensus 160 ~~~~l~~L~l~~~~~~~-----l~-~~~~l~~L~~L~l~~~~l~~~~~~~----~~~l---------~~L~~L~L~~~~~ 220 (363)
.++++++|++++|.+.. ++ .+..+++|++|++++|.+....+.. +..+ ++|++|++++| .
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~ 170 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-R 170 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-C
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-C
Confidence 44677777777777665 22 2456677777777777765433222 2233 77777777777 3
Q ss_pred cc--ccC---ccccCCCCCCEEEccCCCCCc------cchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhcc
Q 017975 221 LT--ELP---VGISSLVSLHHLDLSSTKVRG------LPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHC 288 (363)
Q Consensus 221 ~~--~lp---~~i~~L~~L~~L~l~~~~l~~------lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~ 288 (363)
++ .+| ..+..+++|++|++++|.+.. +|..+..++ |+.|+++.|.++..- ...+|..+..+++
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-----~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-----SSALAIALKSWPN 245 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-----HHHHHHHGGGCTT
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-----HHHHHHHHccCCC
Confidence 43 334 456667777777777777762 333566666 777777777652100 0012356778888
Q ss_pred ccccceEEEEeccCcc---cccc--cCCCchhhhhheeeecccCCCC----cCCccc-ccccccceeeeccCCCCCccc
Q 017975 289 LEQLNLIALSLRGSRG---VENF--LKFPKLQNITQALHIKDCNSLP----LNLLHL-ANMEHLQLFSIWDSNLEDWNV 357 (363)
Q Consensus 289 L~~L~l~~~~~~~~~~---~~~l--~~l~~l~~~L~~L~l~~~~~~~----~~~~~l-~~l~~L~~L~l~~c~~l~~~~ 357 (363)
|+.|++.+|.+.+... ...+ ..++++ ++|++++|.... ..+..+ .++++|+.|++++|++....+
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L----~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGL----QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCC----CEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCe----EEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 8899888887764311 1222 224555 889999887433 234445 568899999999998876553
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=1.7e-12 Score=108.27 Aligned_cols=123 Identities=23% Similarity=0.314 Sum_probs=104.4
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccCC---CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ---IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH 219 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~---~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~ 219 (363)
..+...+..+..+|... ..+++.|++++|.++.++. +..+++|++|++++|.++.+++..|.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N- 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN- 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-
Confidence 35666777777777522 2489999999999998874 789999999999999999998777999999999999999
Q ss_pred CccccC-ccccCCCCCCEEEccCCCCCcc-chhhhccc-hhccccCcCccC
Q 017975 220 YLTELP-VGISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWP 267 (363)
Q Consensus 220 ~~~~lp-~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~-L~~L~~~~~~l~ 267 (363)
.++.+| ..++.+++|++|++++|.++.+ |..+..+. |+.|+++.|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 566654 4589999999999999999986 67888888 999999999865
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=2.9e-12 Score=106.91 Aligned_cols=123 Identities=25% Similarity=0.319 Sum_probs=105.3
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 221 (363)
..+.+.+..++.+|.. -.++++.|++++|.++.+| .+..+++|++|++++|.++.+++..|.++++|++|+|++| .+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RL 90 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-cc
Confidence 3566777777777753 2368999999999999987 5788999999999999999999888999999999999999 56
Q ss_pred cccC-ccccCCCCCCEEEccCCCCCccchh-hhccc-hhccccCcCccC
Q 017975 222 TELP-VGISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWP 267 (363)
Q Consensus 222 ~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~ 267 (363)
+.+| ..++.+++|++|++++|.++.+|.. +..+. |+.|+++.|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6665 5799999999999999999999875 67788 999999988753
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.35 E-value=5.1e-12 Score=103.78 Aligned_cols=123 Identities=28% Similarity=0.481 Sum_probs=103.3
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 221 (363)
.+...+..+..+|. ...++++.|++++|.++.++. +..+++|++|++++|.++.+++..+..+++|++|++++| .+
T Consensus 11 ~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l 88 (177)
T 2o6r_A 11 EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KL 88 (177)
T ss_dssp EEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-Cc
Confidence 34556666666663 234789999999999998874 678999999999999999999887899999999999999 67
Q ss_pred cccCcc-ccCCCCCCEEEccCCCCCccchhh-hccc-hhccccCcCccCc
Q 017975 222 TELPVG-ISSLVSLHHLDLSSTKVRGLPQEL-KALV-LRMLHCGSNHWPI 268 (363)
Q Consensus 222 ~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i-~~L~-L~~L~~~~~~l~~ 268 (363)
+.+|.. ++.+++|++|++++|.++.+|..+ ..+. |+.|+++.|.+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 777654 689999999999999999998865 6687 9999999988653
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=1.1e-14 Score=122.22 Aligned_cols=139 Identities=14% Similarity=0.178 Sum_probs=92.4
Q ss_pred CccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCC
Q 017975 195 HIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGN 273 (363)
Q Consensus 195 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~ 273 (363)
.++.++.. +..+++|++|++++| .++.+| .++.+++|++|++++|.++.+|..+..++ |+.|++++|.++.+|
T Consensus 36 ~l~~l~~~-~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--- 109 (198)
T 1ds9_A 36 PIEKMDAT-LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--- 109 (198)
T ss_dssp TCCCCHHH-HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH---
T ss_pred cHhhhhHH-HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC---
Confidence 34444443 677777777777777 566677 77777777777777777777777666666 777777777766543
Q ss_pred CCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCC----------cccccccccc
Q 017975 274 VLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNL----------LHLANMEHLQ 343 (363)
Q Consensus 274 l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~----------~~l~~l~~L~ 343 (363)
.+..+++|+.|++.+|.+.+......+..++++ ++|++++|......+ ..+..+++|+
T Consensus 110 --------~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L----~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 110 --------GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL----EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp --------HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTC----SEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred --------ccccCCCCCEEECCCCcCCchhHHHHHhcCCCC----CEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence 466777888888888877654333445666665 888888775321111 1267788888
Q ss_pred eeeeccCCCC
Q 017975 344 LFSIWDSNLE 353 (363)
Q Consensus 344 ~L~l~~c~~l 353 (363)
.|+ +++..
T Consensus 178 ~Ld--~~~i~ 185 (198)
T 1ds9_A 178 KLD--GMPVD 185 (198)
T ss_dssp EEC--CGGGT
T ss_pred EEC--CcccC
Confidence 887 55544
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=1.2e-13 Score=128.02 Aligned_cols=185 Identities=15% Similarity=0.151 Sum_probs=104.7
Q ss_pred ccccceEEEeecccccccC-----C-------CCCCCCccEEEeccCCccc----cchHHhcCCCCCCEEEcccCCCcc-
Q 017975 160 EWEGVKRISLMENEIQSLP-----Q-------IPTCPRLQTLLLEYNHIEE----ITESFFQSLPSLRVLNLSVNHYLT- 222 (363)
Q Consensus 160 ~~~~l~~L~l~~~~~~~l~-----~-------~~~l~~L~~L~l~~~~l~~----~~~~~~~~l~~L~~L~L~~~~~~~- 222 (363)
.++++++|++++|.+..+. . +..+++|++|++++|.+.. ..+..+..+++|++|+|++| .++
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~ 136 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGP 136 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHH
T ss_pred hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCH
Confidence 3456666666665443321 1 2456666666666666655 22233566666666666666 332
Q ss_pred ----ccCccccCC---------CCCCEEEccCCCCC--ccc---hhhhccc-hhccccCcCccCcCCCCCCCCCCcccch
Q 017975 223 ----ELPVGISSL---------VSLHHLDLSSTKVR--GLP---QELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLM 283 (363)
Q Consensus 223 ----~lp~~i~~L---------~~L~~L~l~~~~l~--~lP---~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l 283 (363)
.++..+..+ ++|++|++++|.+. .+| ..+..++ |+.|+++.|++...- ..-..+..+
T Consensus 137 ~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g----~~~l~~~~l 212 (386)
T 2ca6_A 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG----IEHLLLEGL 212 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHH----HHHHHHTTG
T ss_pred HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhH----HHHHHHHHh
Confidence 122233333 66666666666665 234 3444555 666666666554100 000011266
Q ss_pred hhhccccccceEEEEecc----CcccccccCCCchhhhhheeeecccCCCCc----CCccc--ccccccceeeeccCCCC
Q 017975 284 KEIHCLEQLNLIALSLRG----SRGVENFLKFPKLQNITQALHIKDCNSLPL----NLLHL--ANMEHLQLFSIWDSNLE 353 (363)
Q Consensus 284 ~~l~~L~~L~l~~~~~~~----~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~----~~~~l--~~l~~L~~L~l~~c~~l 353 (363)
..+++|+.|++.+|.+.. ..+ ..+..++++ ++|++++|..... .+..+ ..+++|+.|++++|.+.
T Consensus 213 ~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~~L----~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 213 AYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNL----RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp GGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCTTC----CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred hcCCCccEEECcCCCCCcHHHHHHH-HHHccCCCc----CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 778888888888887752 222 344555555 8899998874211 12344 33888999999999877
Q ss_pred C
Q 017975 354 D 354 (363)
Q Consensus 354 ~ 354 (363)
.
T Consensus 288 ~ 288 (386)
T 2ca6_A 288 L 288 (386)
T ss_dssp H
T ss_pred H
Confidence 6
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=2.4e-13 Score=124.98 Aligned_cols=187 Identities=18% Similarity=0.170 Sum_probs=120.6
Q ss_pred ccceEEEeecccccccCC------CCCC-CCccEEEeccCCccccchHHh----cC-CCCCCEEEcccCCCcc-----cc
Q 017975 162 EGVKRISLMENEIQSLPQ------IPTC-PRLQTLLLEYNHIEEITESFF----QS-LPSLRVLNLSVNHYLT-----EL 224 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l~~------~~~l-~~L~~L~l~~~~l~~~~~~~~----~~-l~~L~~L~L~~~~~~~-----~l 224 (363)
++++.|++++|.++..+. +..+ ++|++|++++|.++..+...+ .. .++|++|++++| .++ .+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l 158 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDEL 158 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHH
Confidence 678888888888775432 3344 788888888888877665433 33 258888888888 454 45
Q ss_pred CccccCCC-CCCEEEccCCCCCccc-hhhh----cc-c-hhccccCcCccCcCCCCCCCCCCcccchhhh-ccccccceE
Q 017975 225 PVGISSLV-SLHHLDLSSTKVRGLP-QELK----AL-V-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEI-HCLEQLNLI 295 (363)
Q Consensus 225 p~~i~~L~-~L~~L~l~~~~l~~lP-~~i~----~L-~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l-~~L~~L~l~ 295 (363)
+..+..++ +|++|++++|.+...+ ..+. .. . |+.|+++.|.+..... ...+..+..+ ++|+.|++.
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~-----~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY-----AELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-----HHHHHHHHHSCTTCCEEECC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH-----HHHHHHHhcCCCCceEEECc
Confidence 55556665 8888888888887643 3333 33 3 8888888887765110 0122445553 489999999
Q ss_pred EEEeccCcccccccCCCchhhhhheeeecccCC-------CCcCCcccccccccceeeeccCCCCCc
Q 017975 296 ALSLRGSRGVENFLKFPKLQNITQALHIKDCNS-------LPLNLLHLANMEHLQLFSIWDSNLEDW 355 (363)
Q Consensus 296 ~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~-------~~~~~~~l~~l~~L~~L~l~~c~~l~~ 355 (363)
+|.+.+... ..+..+..-...|+.|++++|.. .......+.++++|+.|++++|++...
T Consensus 234 ~N~l~~~~~-~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 234 LNCLHGPSL-ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp SSCCCCCCH-HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCCCcHHH-HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 988765432 22222211122249999999861 122234577888999999999987655
No 131
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=1.2e-11 Score=101.27 Aligned_cols=104 Identities=25% Similarity=0.395 Sum_probs=74.2
Q ss_pred eEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcc-ccCCCCCCEEEccCCC
Q 017975 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTK 243 (363)
Q Consensus 165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~ 243 (363)
+.++++++.++.+|.-. .++|++|++++|.++.+++..|.++++|++|+|++| .++.+|.. +..+++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 56777777777776522 267777888888777776666777778888888877 66666655 4677778888888777
Q ss_pred CCccchh-hhccc-hhccccCcCccCcCC
Q 017975 244 VRGLPQE-LKALV-LRMLHCGSNHWPIAE 270 (363)
Q Consensus 244 l~~lP~~-i~~L~-L~~L~~~~~~l~~lp 270 (363)
++.+|.. +..+. |+.|+++.|.+...+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCCccccc
Confidence 7777765 66676 777777777765444
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=2.2e-11 Score=99.69 Aligned_cols=111 Identities=24% Similarity=0.301 Sum_probs=95.8
Q ss_pred eeEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220 (363)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 220 (363)
..+...+..+..+|... .++++.|++++|.++.++. +..+++|++|++++|.++.+++..|.++++|++|+|++| .
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-H 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-c
Confidence 45667777777777532 3789999999999999853 789999999999999999999987899999999999999 7
Q ss_pred ccccCcc-ccCCCCCCEEEccCCCCCccchhhhccc
Q 017975 221 LTELPVG-ISSLVSLHHLDLSSTKVRGLPQELKALV 255 (363)
Q Consensus 221 ~~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i~~L~ 255 (363)
++.+|.. +..+++|++|++++|.+...|..+..+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR 128 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence 8888875 8999999999999999998887776655
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.25 E-value=1.8e-11 Score=99.83 Aligned_cols=102 Identities=26% Similarity=0.407 Sum_probs=68.1
Q ss_pred ceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcc-ccCCCCCCEEEccCC
Q 017975 164 VKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSST 242 (363)
Q Consensus 164 l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~ 242 (363)
.+.++++++.++.+|.-. .++|++|++++|.++.+++..|.++++|++|+|++| .++.+|.. +..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 356677777777766422 366777777777777776666777777777777777 55565544 467777777777777
Q ss_pred CCCccchh-hhccc-hhccccCcCccC
Q 017975 243 KVRGLPQE-LKALV-LRMLHCGSNHWP 267 (363)
Q Consensus 243 ~l~~lP~~-i~~L~-L~~L~~~~~~l~ 267 (363)
.++.+|.. +..+. |+.|+++.|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 77777653 55666 666666666654
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.24 E-value=7.6e-13 Score=121.63 Aligned_cols=189 Identities=19% Similarity=0.230 Sum_probs=131.0
Q ss_pred ccceEEEeecccccccCC------CCCCC-CccEEEeccCCccccchHHhcCC-----CCCCEEEcccCCCcccc-Ccc-
Q 017975 162 EGVKRISLMENEIQSLPQ------IPTCP-RLQTLLLEYNHIEEITESFFQSL-----PSLRVLNLSVNHYLTEL-PVG- 227 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l~~------~~~l~-~L~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~L~~~~~~~~l-p~~- 227 (363)
+++++|++++|.+...+. +..++ +|++|++++|.+....+..+..+ ++|++|++++| .++.. +..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHH
Confidence 459999999999988652 56777 89999999999988766556654 99999999999 55543 333
Q ss_pred ---ccCC-CCCCEEEccCCCCCccch-hhh----cc-c-hhccccCcCccCcCCCCCCCCCCcccchhhhc-cccccceE
Q 017975 228 ---ISSL-VSLHHLDLSSTKVRGLPQ-ELK----AL-V-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIH-CLEQLNLI 295 (363)
Q Consensus 228 ---i~~L-~~L~~L~l~~~~l~~lP~-~i~----~L-~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~-~L~~L~l~ 295 (363)
+..+ ++|++|++++|.+...+. .+. .+ . |+.|+++.|.++.... ...+..+..++ +|+.|++.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-----~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS-----DELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH-----HHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH-----HHHHHHHhcCCccccEeeec
Confidence 4455 899999999999988654 332 32 3 9999999998763210 01123344454 89999999
Q ss_pred EEEeccCcccccccCC-CchhhhhheeeecccCCCCc----CCccccc-ccccceeeeccCCCCCccc
Q 017975 296 ALSLRGSRGVENFLKF-PKLQNITQALHIKDCNSLPL----NLLHLAN-MEHLQLFSIWDSNLEDWNV 357 (363)
Q Consensus 296 ~~~~~~~~~~~~l~~l-~~l~~~L~~L~l~~~~~~~~----~~~~l~~-l~~L~~L~l~~c~~l~~~~ 357 (363)
+|.+.+..+ ..+... ...+..|++|++++|.-... .+..+.. .++|+.|++++|.+....+
T Consensus 176 ~n~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 176 GNNLASKNC-AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp TSCGGGSCH-HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred CCCCchhhH-HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 998875543 222221 11112459999999874221 2234544 4599999999999876544
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.19 E-value=8.5e-11 Score=95.85 Aligned_cols=110 Identities=23% Similarity=0.267 Sum_probs=92.6
Q ss_pred eEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975 144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 221 (363)
.+...+..++.+|... .++++.|++++|.++.++. +..+++|++|++++|.++.+++..|.++++|++|+|++| .+
T Consensus 13 ~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l 90 (170)
T 3g39_A 13 TVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QL 90 (170)
T ss_dssp EEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-cc
Confidence 4566777777777532 3789999999999999853 789999999999999999999988899999999999999 77
Q ss_pred cccCc-cccCCCCCCEEEccCCCCCccchhhhccc
Q 017975 222 TELPV-GISSLVSLHHLDLSSTKVRGLPQELKALV 255 (363)
Q Consensus 222 ~~lp~-~i~~L~~L~~L~l~~~~l~~lP~~i~~L~ 255 (363)
+.+|. .+..+++|++|++++|.+...+..+..+.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~ 125 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLS 125 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHH
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHH
Confidence 77776 48999999999999999887766554443
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.17 E-value=1e-12 Score=124.59 Aligned_cols=193 Identities=19% Similarity=0.165 Sum_probs=102.8
Q ss_pred cccceEEEeecccccccC--CC-----CCCCCccEEEeccCCcccc----chHHhcCCCCCCEEEcccCCCcccc-----
Q 017975 161 WEGVKRISLMENEIQSLP--QI-----PTCPRLQTLLLEYNHIEEI----TESFFQSLPSLRVLNLSVNHYLTEL----- 224 (363)
Q Consensus 161 ~~~l~~L~l~~~~~~~l~--~~-----~~l~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~l----- 224 (363)
++++++|++++|.+.... .+ ...++|++|++++|.++.. .+..+..+++|++|++++| .++..
T Consensus 169 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l 247 (461)
T 1z7x_W 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAEL 247 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHH
T ss_pred CCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHH
Confidence 456666666666554321 11 1234566666666655542 1222455556666666655 33221
Q ss_pred -CccccCCCCCCEEEccCCCCCc-----cchhhhccc-hhccccCcCccCcCCC-----------CCCCCC---------
Q 017975 225 -PVGISSLVSLHHLDLSSTKVRG-----LPQELKALV-LRMLHCGSNHWPIAEE-----------GNVLSD--------- 277 (363)
Q Consensus 225 -p~~i~~L~~L~~L~l~~~~l~~-----lP~~i~~L~-L~~L~~~~~~l~~lp~-----------~~l~~l--------- 277 (363)
+.....+++|++|++++|.++. +|..+..++ |+.|+++.|.+..... .++..+
T Consensus 248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence 1112235556666666655554 455555455 5555555555431100 011111
Q ss_pred ----CcccchhhhccccccceEEEEeccCcccccccC-CCchhhhhheeeecccCCCC----cCCcccccccccceeeec
Q 017975 278 ----DAESLMKEIHCLEQLNLIALSLRGSRGVENFLK-FPKLQNITQALHIKDCNSLP----LNLLHLANMEHLQLFSIW 348 (363)
Q Consensus 278 ----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-l~~l~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~ 348 (363)
..+..+..+++|+.|++.+|.+.+... ..+.. +......|++|++++|.... ..+..+..+++|+.|+++
T Consensus 328 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGV-RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp GGHHHHHHHHHHCSSCCEEECCSSBCHHHHH-HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred HHHHHHHHHHhhCCCccEEEccCCccccccH-HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence 134556677899999998887654322 22221 11111235999999986432 335567788999999999
Q ss_pred cCCCCCc
Q 017975 349 DSNLEDW 355 (363)
Q Consensus 349 ~c~~l~~ 355 (363)
+|++...
T Consensus 407 ~N~i~~~ 413 (461)
T 1z7x_W 407 NNCLGDA 413 (461)
T ss_dssp SSSCCHH
T ss_pred CCCCCHH
Confidence 9987643
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.15 E-value=9.8e-13 Score=124.68 Aligned_cols=132 Identities=21% Similarity=0.191 Sum_probs=62.6
Q ss_pred cceEEEeecccccccC------CCCCCCCccEEEeccCCccccchHHhc-----CCCCCCEEEcccCCCccc-----cCc
Q 017975 163 GVKRISLMENEIQSLP------QIPTCPRLQTLLLEYNHIEEITESFFQ-----SLPSLRVLNLSVNHYLTE-----LPV 226 (363)
Q Consensus 163 ~l~~L~l~~~~~~~l~------~~~~l~~L~~L~l~~~~l~~~~~~~~~-----~l~~L~~L~L~~~~~~~~-----lp~ 226 (363)
++++|++++|.++... .+..+++|++|++++|.+.......+. ..++|++|++++| .++. +|.
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~ 221 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCG 221 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHH
Confidence 4555555555444311 123345566666665554432222121 2445666666666 3332 345
Q ss_pred cccCCCCCCEEEccCCCCCcc-----chhh-hccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEe
Q 017975 227 GISSLVSLHHLDLSSTKVRGL-----PQEL-KALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSL 299 (363)
Q Consensus 227 ~i~~L~~L~~L~l~~~~l~~l-----P~~i-~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~ 299 (363)
.+..+++|++|++++|.+... ++.+ ..+. |+.|+++.|.++.... ...+..+..+++|+.|++.+|.+
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-----~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC-----GDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-----HHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH-----HHHHHHHhhCCCcceEECCCCCC
Confidence 555556666666666655432 1221 1233 5555565555543100 00224445566666666666654
Q ss_pred c
Q 017975 300 R 300 (363)
Q Consensus 300 ~ 300 (363)
.
T Consensus 297 ~ 297 (461)
T 1z7x_W 297 G 297 (461)
T ss_dssp H
T ss_pred c
Confidence 3
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=3.6e-13 Score=112.92 Aligned_cols=111 Identities=25% Similarity=0.295 Sum_probs=77.1
Q ss_pred CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhc
Q 017975 180 IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRM 258 (363)
Q Consensus 180 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~ 258 (363)
+..+++|++|++++|.++.++ . +.++++|++|++++| .++.+|..++.+++|++|++++|.++.+| .+..+. |+.
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence 556677777777777777765 3 677777777777777 56677776666777777777777777776 566666 777
Q ss_pred cccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccC
Q 017975 259 LHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGS 302 (363)
Q Consensus 259 L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~ 302 (363)
|+++.|.++.+| ....+..+++|+.|++.+|.+.+.
T Consensus 120 L~l~~N~i~~~~--------~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 120 LYMSNNKITNWG--------EIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEESEEECCCHH--------HHHHHTTTTTCSEEEECSCHHHHH
T ss_pred EECCCCcCCchh--------HHHHHhcCCCCCEEEecCCccccc
Confidence 777777766554 112466677777777777766544
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=3e-10 Score=103.53 Aligned_cols=101 Identities=22% Similarity=0.221 Sum_probs=65.7
Q ss_pred EEecCC-CCCCCccccccccceEEEeec-ccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975 145 LVRAGV-GLTDAPKIEEWEGVKRISLME-NEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220 (363)
Q Consensus 145 ~~~~~~-~~~~~~~~~~~~~l~~L~l~~-~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 220 (363)
+.+.+. .++.+|.+..+.+++.|++++ |.++.++. +..+++|+.|+|++|.++.+++..|.++++|++|+|++| .
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-A 91 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-C
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-c
Confidence 344444 566666555556677777774 77766653 666777777777777777776666677777777777777 5
Q ss_pred ccccCccccCCCCCCEEEccCCCCCc
Q 017975 221 LTELPVGISSLVSLHHLDLSSTKVRG 246 (363)
Q Consensus 221 ~~~lp~~i~~L~~L~~L~l~~~~l~~ 246 (363)
++.+|..+.....|++|+|.+|.+..
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCccC
Confidence 66666554444447777777776664
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.95 E-value=2.1e-09 Score=97.90 Aligned_cols=102 Identities=21% Similarity=0.241 Sum_probs=88.3
Q ss_pred EEEeecc-cccccCCCCCCCCccEEEecc-CCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCC
Q 017975 166 RISLMEN-EIQSLPQIPTCPRLQTLLLEY-NHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSST 242 (363)
Q Consensus 166 ~L~l~~~-~~~~l~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~ 242 (363)
.++.+++ .++.+|.+..+++|+.|+|++ |.+..+++..|.++++|++|+|++| .++.+ |..|++|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 4577777 899999888899999999996 9999999888999999999999999 56665 457899999999999999
Q ss_pred CCCccchhhhcc-chhccccCcCccCc
Q 017975 243 KVRGLPQELKAL-VLRMLHCGSNHWPI 268 (363)
Q Consensus 243 ~l~~lP~~i~~L-~L~~L~~~~~~l~~ 268 (363)
.++.+|..+... .|+.|++..|.+.-
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCccC
Confidence 999998876544 48999999888764
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=9.7e-10 Score=99.41 Aligned_cols=177 Identities=15% Similarity=0.249 Sum_probs=102.7
Q ss_pred cccceEEEeeccccc--------------------ccCC--CCC--------CCCccEEEeccCCccccchHHhcCCCCC
Q 017975 161 WEGVKRISLMENEIQ--------------------SLPQ--IPT--------CPRLQTLLLEYNHIEEITESFFQSLPSL 210 (363)
Q Consensus 161 ~~~l~~L~l~~~~~~--------------------~l~~--~~~--------l~~L~~L~l~~~~l~~~~~~~~~~l~~L 210 (363)
+++++.|++++|.+. .+|. |.. +++|+.+++.. .++.+++..|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 467888888888777 2232 445 78888888888 7888888878888888
Q ss_pred CEEEcccCCCcccc-CccccCCCCCCEEEccCCC------------------C---------Cccchhhh----------
Q 017975 211 RVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTK------------------V---------RGLPQELK---------- 252 (363)
Q Consensus 211 ~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~------------------l---------~~lP~~i~---------- 252 (363)
+.++++++ .+..+ +..+..+.++.++....+. + ..+|..+.
T Consensus 127 ~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 127 KICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred ceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 88888888 33333 3344444444444433210 0 00111100
Q ss_pred ------------------ccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCc
Q 017975 253 ------------------ALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPK 313 (363)
Q Consensus 253 ------------------~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 313 (363)
.+. |+.+++..|+++.+|. ..+.++.+|+.+.+.++ + ..++...|..+.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~---------~aF~~~~~L~~l~l~~n-i-~~I~~~aF~~~~~ 274 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD---------FTFAQKKYLLKIKLPHN-L-KTIGQRVFSNCGR 274 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT---------TTTTTCTTCCEEECCTT-C-CEECTTTTTTCTT
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH---------hhhhCCCCCCEEECCcc-c-ceehHHHhhCChh
Confidence 123 6666666666666663 45666677777766654 2 2233355555555
Q ss_pred hhhhhh-eeeecccCCCCcCCcccccccccceeeeccCCCCCc
Q 017975 314 LQNITQ-ALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDW 355 (363)
Q Consensus 314 l~~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~ 355 (363)
| + .+++.+ +-.......|.++++|+.++++++.....
T Consensus 275 L----~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 275 L----AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp C----CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred c----cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence 5 6 677765 22222335677777777777766655433
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.87 E-value=2.5e-10 Score=111.55 Aligned_cols=16 Identities=13% Similarity=0.447 Sum_probs=8.9
Q ss_pred cccccceeeeccCCCC
Q 017975 338 NMEHLQLFSIWDSNLE 353 (363)
Q Consensus 338 ~l~~L~~L~l~~c~~l 353 (363)
.+++|+.|+++.+.+.
T Consensus 376 ~~~~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 376 GCQELEYMAVYVSDIT 391 (592)
T ss_dssp HCTTCSEEEEEESCCC
T ss_pred hCccCeEEEeecCCcc
Confidence 3566666666544443
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.71 E-value=4.4e-09 Score=102.69 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=49.8
Q ss_pred cccceEEEeecccccccC-----C-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc---cccCccccCC
Q 017975 161 WEGVKRISLMENEIQSLP-----Q-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL---TELPVGISSL 231 (363)
Q Consensus 161 ~~~l~~L~l~~~~~~~l~-----~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~---~~lp~~i~~L 231 (363)
+++++.|++++|.++.+. . +..+++|++|++++|.+..++.. +.++++|+.|++++.... ...+..++.+
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH-HhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 345555555555443211 1 23456666666666655554432 555555555555532111 1222334444
Q ss_pred CCCCEEEccCCCCCccchhhhccc-hhccccCcCc
Q 017975 232 VSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNH 265 (363)
Q Consensus 232 ~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~ 265 (363)
++|+.|+++++....+|..+..++ |+.|+++.+.
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 444444444444444555555555 5555555554
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.69 E-value=7.4e-10 Score=108.19 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=36.5
Q ss_pred cccceEEEeecccccc-----cCCC-CCCCCccEEEeccCC--cc-ccchHHhcCCCCCCEEEcccCCCccccCccccCC
Q 017975 161 WEGVKRISLMENEIQS-----LPQI-PTCPRLQTLLLEYNH--IE-EITESFFQSLPSLRVLNLSVNHYLTELPVGISSL 231 (363)
Q Consensus 161 ~~~l~~L~l~~~~~~~-----l~~~-~~l~~L~~L~l~~~~--l~-~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L 231 (363)
++++++|++++|.+.. ++.+ ..+++|++|++++|. +. ......+.++++|++|++++|..+..+|..+..+
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence 4455555555554332 1111 244555555555553 11 0011112334555555555554444455555555
Q ss_pred CCCCEEEccC
Q 017975 232 VSLHHLDLSS 241 (363)
Q Consensus 232 ~~L~~L~l~~ 241 (363)
++|++|++++
T Consensus 235 ~~L~~L~l~~ 244 (594)
T 2p1m_B 235 PQLEELGTGG 244 (594)
T ss_dssp TTCSEEECSB
T ss_pred CcceEccccc
Confidence 5555555443
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=2.3e-08 Score=90.31 Aligned_cols=182 Identities=13% Similarity=0.092 Sum_probs=116.3
Q ss_pred ccccceEEEeecccc-cccCCCCC-CCCccEEEeccCCcc--------------------ccchHHhcC--------CCC
Q 017975 160 EWEGVKRISLMENEI-QSLPQIPT-CPRLQTLLLEYNHIE--------------------EITESFFQS--------LPS 209 (363)
Q Consensus 160 ~~~~l~~L~l~~~~~-~~l~~~~~-l~~L~~L~l~~~~l~--------------------~~~~~~~~~--------l~~ 209 (363)
.+.+++.|.+.++-- ..+..+.. +++|++|+|++|.+. .+++..|.+ +.+
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence 457889999887411 11222223 789999999999888 566677888 999
Q ss_pred CCEEEcccCCCccccC-ccccCCCCCCEEEccCCCCCccchhh-hccc-hhccccCcC----ccCcCCC------CCCC-
Q 017975 210 LRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVRGLPQEL-KALV-LRMLHCGSN----HWPIAEE------GNVL- 275 (363)
Q Consensus 210 L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i-~~L~-L~~L~~~~~----~l~~lp~------~~l~- 275 (363)
|+.++|.+ .++.++ ..+.++.+|+.++++++.+..++... .... +..+..+.+ ....+.. .++.
T Consensus 103 L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 103 LEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp CCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred CcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 99999998 366665 45889999999999999888876543 2222 333322221 0011110 0000
Q ss_pred -------------------------CC---------CcccchhhhccccccceEEEEeccCcccccccCCCchhhhhhee
Q 017975 276 -------------------------SD---------DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQAL 321 (363)
Q Consensus 276 -------------------------~l---------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L 321 (363)
.+ ........+++|+.+++.+|.+.. ++...|..+.+| +.+
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L----~~l 255 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-IPDFTFAQKKYL----LKI 255 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTCTTC----CEE
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-ecHhhhhCCCCC----CEE
Confidence 00 000001136789999998877654 344667777777 999
Q ss_pred eecccCCCCcCCcccccccccc-eeeecc
Q 017975 322 HIKDCNSLPLNLLHLANMEHLQ-LFSIWD 349 (363)
Q Consensus 322 ~l~~~~~~~~~~~~l~~l~~L~-~L~l~~ 349 (363)
++.++ -.......|.++++|+ .+++.+
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 99885 2233345689999999 999987
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.62 E-value=3e-09 Score=103.89 Aligned_cols=66 Identities=21% Similarity=0.219 Sum_probs=34.1
Q ss_pred ccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcc-cccccccceeeeccC
Q 017975 280 ESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLH-LANMEHLQLFSIWDS 350 (363)
Q Consensus 280 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~c 350 (363)
+..+..+++|+.|++.+|.+........+..++++ ++|++++|-. ...+.. ...+++|+.|++++|
T Consensus 282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L----~~L~l~~~~~-~~~l~~l~~~~~~L~~L~L~~~ 348 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKL----QRLWVLDYIE-DAGLEVLASTCKDLRELRVFPS 348 (594)
T ss_dssp GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTC----CEEEEEGGGH-HHHHHHHHHHCTTCCEEEEECS
T ss_pred HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCc----CEEeCcCccC-HHHHHHHHHhCCCCCEEEEecC
Confidence 33444667777777776664322211123344444 7777777621 111111 234677888887543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.48 E-value=1.4e-09 Score=99.93 Aligned_cols=157 Identities=13% Similarity=0.121 Sum_probs=101.6
Q ss_pred ccceEEEeecccccccC-----C-C-CCCCCccEEEeccCCccccc-hHHhcCCCCCCEEEcccCCCcccc-Cccc----
Q 017975 162 EGVKRISLMENEIQSLP-----Q-I-PTCPRLQTLLLEYNHIEEIT-ESFFQSLPSLRVLNLSVNHYLTEL-PVGI---- 228 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l~-----~-~-~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~L~~~~~~~~l-p~~i---- 228 (363)
+.++.|++++|.+.... . + ...++|+.|++++|.+.... ......+++|++|+|++| .++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 57999999999886532 1 1 23479999999999886432 222345678999999999 55432 2222
Q ss_pred -cCCCCCCEEEccCCCCCc-----cchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975 229 -SSLVSLHHLDLSSTKVRG-----LPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG 301 (363)
Q Consensus 229 -~~L~~L~~L~l~~~~l~~-----lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~ 301 (363)
...++|++|+|++|.+.. ++..+...+ |+.|++++|.+..... ..++..+...++|+.|++.+|.+..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~-----~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL-----ELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH-----HHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH-----HHHHHHHhcCCCcCeEECCCCCCCH
Confidence 346789999999999875 555556666 8899999888653210 0112345566788888888887654
Q ss_pred Ccc---cccccCCCchhhhhheeeecccCC
Q 017975 302 SRG---VENFLKFPKLQNITQALHIKDCNS 328 (363)
Q Consensus 302 ~~~---~~~l~~l~~l~~~L~~L~l~~~~~ 328 (363)
... ...+...+. |++|++++|..
T Consensus 226 ~g~~~l~~~L~~~~~----L~~L~Ls~N~i 251 (372)
T 3un9_A 226 TAALALARAAREHPS----LELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHHHHCSS----CCEEECTTSSC
T ss_pred HHHHHHHHHHHhCCC----CCEEeccCCCC
Confidence 221 011222233 48888888763
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.31 E-value=3e-08 Score=91.04 Aligned_cols=38 Identities=34% Similarity=0.346 Sum_probs=16.6
Q ss_pred CCCCCEEEcccCCCccc-----cCccccCCCCCCEEEccCCCCC
Q 017975 207 LPSLRVLNLSVNHYLTE-----LPVGISSLVSLHHLDLSSTKVR 245 (363)
Q Consensus 207 l~~L~~L~L~~~~~~~~-----lp~~i~~L~~L~~L~l~~~~l~ 245 (363)
.++|++|+|++| .++. ++..+..+++|++|+|++|.+.
T Consensus 154 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 154 QCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp TCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred CCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 344555555554 2221 2333344444555555555443
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.22 E-value=5.2e-06 Score=76.89 Aligned_cols=178 Identities=15% Similarity=0.135 Sum_probs=86.8
Q ss_pred cceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEc
Q 017975 163 GVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDL 239 (363)
Q Consensus 163 ~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l 239 (363)
+++.+.+.. .++.++ .|..+++|+.+++..|.++.++...|. ..+|+.+.+..+ ++.++ ..+.++.+|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence 466666653 455544 356677777777777766666666555 366666666643 44433 34556666666666
Q ss_pred cCCCCCccchhhhccc-hhccccCcCccCcCCC------CCCCCC--------------CcccchhhhccccccceEEEE
Q 017975 240 SSTKVRGLPQELKALV-LRMLHCGSNHWPIAEE------GNVLSD--------------DAESLMKEIHCLEQLNLIALS 298 (363)
Q Consensus 240 ~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~------~~l~~l--------------~~~~~l~~l~~L~~L~l~~~~ 298 (363)
..+ ++.++.....-. |+.+.+ .+.++.++. .+|..+ -.+..+.++.+|+.+.+..+
T Consensus 234 ~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~- 310 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES- 310 (401)
T ss_dssp CTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-
T ss_pred CCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-
Confidence 542 333332211112 333222 122222222 011100 01133455556666555421
Q ss_pred eccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975 299 LRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED 354 (363)
Q Consensus 299 ~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~ 354 (363)
+. .++...|.++.+| +.+.+.++ -.......|.++ +|+.+++.+|....
T Consensus 311 i~-~I~~~aF~~c~~L----~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 311 IR-ILGQGLLGGNRKV----TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp CC-EECTTTTTTCCSC----CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred eE-EEhhhhhcCCCCc----cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 11 2222344444554 66666442 112223456667 77888887775443
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.08 E-value=1.1e-05 Score=74.67 Aligned_cols=178 Identities=13% Similarity=0.158 Sum_probs=121.1
Q ss_pred ccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017975 162 EGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDL 239 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 239 (363)
.+++.+.+..+ ++.++. |.+ .+|+.+.+.. .++.+....|.++.+|+.+++++| .++.+|.......+|+.+.+
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC
T ss_pred CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe
Confidence 36888888755 666653 455 4799999986 788888888999999999999998 78888887777899999999
Q ss_pred cCCCCCccch-hhhccc-hhccccCcCccCcCCC-----CCCCCCCcc--------cchhhhccccccceEEEEec----
Q 017975 240 SSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEE-----GNVLSDDAE--------SLMKEIHCLEQLNLIALSLR---- 300 (363)
Q Consensus 240 ~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~-----~~l~~l~~~--------~~l~~l~~L~~L~l~~~~~~---- 300 (363)
.. +++.++. .+..+. |+.+.+.. .++.++. .++..+.+| ..+.++++|+.+.+.++...
T Consensus 211 p~-~l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~ 288 (401)
T 4fdw_A 211 PV-TLKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPE 288 (401)
T ss_dssp CT-TCCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTT
T ss_pred CC-chheehhhHhhCCCCCCEEecCC-CccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcc
Confidence 84 4888865 455555 77766654 3555554 333333222 34556777887777665432
Q ss_pred cCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccC
Q 017975 301 GSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDS 350 (363)
Q Consensus 301 ~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c 350 (363)
...+...|..+++| +.+.+.+. -.......+.++++|+.+.+..+
T Consensus 289 ~~I~~~aF~~c~~L----~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 289 AMIHPYCLEGCPKL----ARFEIPES-IRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp CEECTTTTTTCTTC----CEECCCTT-CCEECTTTTTTCCSCCEEEECTT
T ss_pred cEECHHHhhCCccC----CeEEeCCc-eEEEhhhhhcCCCCccEEEECcc
Confidence 11333556666666 77777742 22222346778888888888543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.00 E-value=5.8e-06 Score=75.32 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=77.8
Q ss_pred cccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHh--cCCCCCCEEEcccCCC-------ccccCccc-
Q 017975 159 EEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFF--QSLPSLRVLNLSVNHY-------LTELPVGI- 228 (363)
Q Consensus 159 ~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~--~~l~~L~~L~L~~~~~-------~~~lp~~i- 228 (363)
..+++|+.|.+.++.-..++.+ .+++|+.|++..+.+..-....+ ..+++|+.|+|+.+.. +..+...+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred hcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 3457888888887732344443 37888888888877653222223 3688888888863211 11121122
Q ss_pred -cCCCCCCEEEccCCCCCc-cchhhh---ccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEec
Q 017975 229 -SSLVSLHHLDLSSTKVRG-LPQELK---ALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR 300 (363)
Q Consensus 229 -~~L~~L~~L~l~~~~l~~-lP~~i~---~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~ 300 (363)
..+++|++|++++|.+.. .+..+. .++ |+.|++++|.+...-. ..++..+..+++|+.|++..|.++
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~-----~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA-----RLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH-----HHHHTTHHHHTTCSEEECCSBBCC
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH-----HHHHhhcccCCcceEEECCCCcCC
Confidence 347888999988887753 222232 234 7777777766543100 001133455667777777666543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.98 E-value=2.9e-06 Score=77.35 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=71.3
Q ss_pred HHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCcc-chhhh--ccc-hhccccCc--CccCcCCCCCCC
Q 017975 202 SFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGL-PQELK--ALV-LRMLHCGS--NHWPIAEEGNVL 275 (363)
Q Consensus 202 ~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~l-P~~i~--~L~-L~~L~~~~--~~l~~lp~~~l~ 275 (363)
..+..+++|+.|+++++..+ .+|. +. +++|++|++..|.+..- ...+. .++ |+.|+++. +....-+ ...
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~ 240 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMN 240 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGG
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHH
Confidence 33566677777777776222 3443 33 66777777776665421 11222 334 55554421 1100000 000
Q ss_pred CCCcccch--hhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCC----cCCcccccccccceeeecc
Q 017975 276 SDDAESLM--KEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLP----LNLLHLANMEHLQLFSIWD 349 (363)
Q Consensus 276 ~l~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~ 349 (363)
.+ ...+ ..+++|+.|++.+|.+..... ..+...+. ...|++|+|+.|.... .....+.++++|+.|++++
T Consensus 241 ~l--~~~l~~~~~p~Lr~L~L~~~~i~~~~~-~~la~a~~-~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 241 VF--RPLFSKDRFPNLKWLGIVDAEEQNVVV-EMFLESDI-LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp GT--GGGSCTTTCTTCCEEEEESCTTHHHHH-HHHHHCSS-GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred HH--HHHHhcCCCCCcCEEeCCCCCCchHHH-HHHHhCcc-CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 00 0111 246778888887766543211 12222121 2234888887765211 1233456778888888888
Q ss_pred CCCCC
Q 017975 350 SNLED 354 (363)
Q Consensus 350 c~~l~ 354 (363)
|.+..
T Consensus 317 n~i~d 321 (362)
T 2ra8_A 317 NYLSD 321 (362)
T ss_dssp BBCCH
T ss_pred CcCCH
Confidence 87653
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=2.6e-05 Score=62.93 Aligned_cols=85 Identities=18% Similarity=0.166 Sum_probs=60.3
Q ss_pred ccceEEEeecccccc--cCCCCCCCCccEEEeccCC-ccccchHHhcCC----CCCCEEEcccCCCcccc-CccccCCCC
Q 017975 162 EGVKRISLMENEIQS--LPQIPTCPRLQTLLLEYNH-IEEITESFFQSL----PSLRVLNLSVNHYLTEL-PVGISSLVS 233 (363)
Q Consensus 162 ~~l~~L~l~~~~~~~--l~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l----~~L~~L~L~~~~~~~~l-p~~i~~L~~ 233 (363)
..++.|+++++.++. +..+..+++|+.|++++|. ++..--..+..+ ++|++|+|++|..++.- -..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 368899999887755 3456788899999999884 554333335554 36899999998666541 124677888
Q ss_pred CCEEEccCC-CCCc
Q 017975 234 LHHLDLSST-KVRG 246 (363)
Q Consensus 234 L~~L~l~~~-~l~~ 246 (363)
|++|++++| .++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 999999988 4554
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=2.1e-05 Score=68.15 Aligned_cols=80 Identities=25% Similarity=0.337 Sum_probs=59.2
Q ss_pred EEeecccccccCC-----CCCCCCccEEEeccCCccccch--HHhcCCCCCCEEEcccCCCccccCccccCCC--CCCEE
Q 017975 167 ISLMENEIQSLPQ-----IPTCPRLQTLLLEYNHIEEITE--SFFQSLPSLRVLNLSVNHYLTELPVGISSLV--SLHHL 237 (363)
Q Consensus 167 L~l~~~~~~~l~~-----~~~l~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~--~L~~L 237 (363)
+++..|....++. ..++++|++|+|++|.++.+++ ..+..+++|++|+|++| .+..+ ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceE
Confidence 5566664444332 1467899999999999987653 44678999999999999 66665 3455555 89999
Q ss_pred EccCCCCCc-cc
Q 017975 238 DLSSTKVRG-LP 248 (363)
Q Consensus 238 ~l~~~~l~~-lP 248 (363)
+|++|.+.. +|
T Consensus 226 ~L~~Npl~~~~~ 237 (267)
T 3rw6_A 226 WLDGNSLCDTFR 237 (267)
T ss_dssp ECTTSTTGGGCS
T ss_pred EccCCcCccccC
Confidence 999999874 44
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.73 E-value=6e-06 Score=66.68 Aligned_cols=35 Identities=6% Similarity=0.065 Sum_probs=23.8
Q ss_pred CCCCEEEcccCCCccc-cCccccCCCCCCEEEccCCC
Q 017975 208 PSLRVLNLSVNHYLTE-LPVGISSLVSLHHLDLSSTK 243 (363)
Q Consensus 208 ~~L~~L~L~~~~~~~~-lp~~i~~L~~L~~L~l~~~~ 243 (363)
..|+.||+++|. ++. --..+.++++|++|+|++|.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCC
Confidence 468888888884 432 22356777888888888873
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.72 E-value=1.2e-05 Score=65.94 Aligned_cols=84 Identities=15% Similarity=0.223 Sum_probs=49.1
Q ss_pred ccceEEEeecc-cccc-----c-CCCCCCCCccEEEeccCCccccc----hHHhcCCCCCCEEEcccCCCccc-----cC
Q 017975 162 EGVKRISLMEN-EIQS-----L-PQIPTCPRLQTLLLEYNHIEEIT----ESFFQSLPSLRVLNLSVNHYLTE-----LP 225 (363)
Q Consensus 162 ~~l~~L~l~~~-~~~~-----l-~~~~~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~~~~~~~-----lp 225 (363)
+.+++|++++| .+.. + ..+...++|++|++++|.+.... ...+...++|++|+|++| .++. +.
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~ 114 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALV 114 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHH
Confidence 56777777776 5543 1 12344566777777777664321 222445566777777777 3432 44
Q ss_pred ccccCCCCCCEEEc--cCCCCCc
Q 017975 226 VGISSLVSLHHLDL--SSTKVRG 246 (363)
Q Consensus 226 ~~i~~L~~L~~L~l--~~~~l~~ 246 (363)
..+...++|++|+| ++|.+..
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHhCCCceEEEecCCCCCCCH
Confidence 55666667777777 6666653
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=3.9e-05 Score=66.53 Aligned_cols=110 Identities=21% Similarity=0.214 Sum_probs=70.7
Q ss_pred CCCCCCccE--EEeccCCccccc---hHHhcCCCCCCEEEcccCCCccc---cCccccCCCCCCEEEccCCCCCccchhh
Q 017975 180 IPTCPRLQT--LLLEYNHIEEIT---ESFFQSLPSLRVLNLSVNHYLTE---LPVGISSLVSLHHLDLSSTKVRGLPQEL 251 (363)
Q Consensus 180 ~~~l~~L~~--L~l~~~~l~~~~---~~~~~~l~~L~~L~L~~~~~~~~---lp~~i~~L~~L~~L~l~~~~l~~lP~~i 251 (363)
+...+.|.. ++++.|....++ .....++++|+.|+|++| .+.. +|..++.+++|++|+|++|.++.+ ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh
Confidence 334445555 666777544332 222357899999999999 5554 456677899999999999999987 345
Q ss_pred hccc---hhccccCcCccCc-CCCCCCCCCCcccchhhhccccccce
Q 017975 252 KALV---LRMLHCGSNHWPI-AEEGNVLSDDAESLMKEIHCLEQLNL 294 (363)
Q Consensus 252 ~~L~---L~~L~~~~~~l~~-lp~~~l~~l~~~~~l~~l~~L~~L~l 294 (363)
..+. |+.|++..|.+.. +|. ........+..+++|+.|+-
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~---~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRD---QSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSS---HHHHHHHHHHHCTTCCEESS
T ss_pred hhcccCCcceEEccCCcCccccCc---chhHHHHHHHHCcccCeECC
Confidence 5554 8888888888653 321 00001134566777777653
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.52 E-value=2.8e-05 Score=63.73 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=61.8
Q ss_pred CCCCCCccEEEeccC-Ccccc----chHHhcCCCCCCEEEcccCCCccc-----cCccccCCCCCCEEEccCCCCCc---
Q 017975 180 IPTCPRLQTLLLEYN-HIEEI----TESFFQSLPSLRVLNLSVNHYLTE-----LPVGISSLVSLHHLDLSSTKVRG--- 246 (363)
Q Consensus 180 ~~~l~~L~~L~l~~~-~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~-----lp~~i~~L~~L~~L~l~~~~l~~--- 246 (363)
+...++|++|++++| .+... ....+...++|++|+|++| .++. +...+...++|++|+|++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 456788999999998 77542 2233677889999999999 4442 44556667889999999998875
Q ss_pred --cchhhhccc-hhcccc--CcCccC
Q 017975 247 --LPQELKALV-LRMLHC--GSNHWP 267 (363)
Q Consensus 247 --lP~~i~~L~-L~~L~~--~~~~l~ 267 (363)
+...+...+ |+.|++ ++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCC
Confidence 444554444 777777 666643
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.00 E-value=0.0086 Score=45.61 Aligned_cols=52 Identities=23% Similarity=0.355 Sum_probs=28.9
Q ss_pred EEEeeccccc--ccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccC
Q 017975 166 RISLMENEIQ--SLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN 218 (363)
Q Consensus 166 ~L~l~~~~~~--~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~ 218 (363)
.++-+++.++ .+|.- -.++|+.|+|++|.++.++++.|..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4444555554 44421 1134666666666666666665666666666666665
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.35 E-value=0.021 Score=43.43 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=39.1
Q ss_pred EEEeccCCcc--ccchHHhcCCCCCCEEEcccCCCccccCcc-ccCCCCCCEEEccCCCCC
Q 017975 188 TLLLEYNHIE--EITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTKVR 245 (363)
Q Consensus 188 ~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~ 245 (363)
.++.+++.++ .+|.. + -.+|++|+|++| .++.+|.. +..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-F--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC-C--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC-C--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 6777777777 66654 1 346888888888 67777654 567888888888888654
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.15 E-value=0.22 Score=44.98 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=43.1
Q ss_pred CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEccCCCCCccchh-hhccc-h
Q 017975 180 IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVRGLPQE-LKALV-L 256 (363)
Q Consensus 180 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L 256 (363)
+..+..|+.+.+..+ ++.+....|.++.+|+.+.+..+ +..++ ..+.++.+|+.+.+.++.++.++.. +.... |
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 345556666666544 44555555666666666666543 33333 2455666677777766666666542 33333 4
Q ss_pred hcccc
Q 017975 257 RMLHC 261 (363)
Q Consensus 257 ~~L~~ 261 (363)
+.+.+
T Consensus 313 ~~i~l 317 (379)
T 4h09_A 313 SSVTL 317 (379)
T ss_dssp CEEEC
T ss_pred CEEEc
Confidence 44433
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.97 E-value=0.33 Score=44.18 Aligned_cols=16 Identities=6% Similarity=-0.039 Sum_probs=9.4
Q ss_pred cccccccccceeeecc
Q 017975 334 LHLANMEHLQLFSIWD 349 (363)
Q Consensus 334 ~~l~~l~~L~~L~l~~ 349 (363)
.++.++++|+.+++..
T Consensus 360 ~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 360 NAFQGCINLKKVELPK 375 (394)
T ss_dssp TTBTTCTTCCEEEEEG
T ss_pred HHhhCCCCCCEEEECC
Confidence 3456666666666643
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.69 E-value=0.44 Score=43.31 Aligned_cols=104 Identities=18% Similarity=0.295 Sum_probs=56.4
Q ss_pred CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCc-cccCCCCCCEEEccCCCCCccch-hhhccc-h
Q 017975 180 IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTKVRGLPQ-ELKALV-L 256 (363)
Q Consensus 180 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~-L 256 (363)
+..+.+|+.+.+..+ +..+....|.++..|+.+.+... ++.++. .+.++.+|+.+.+..+ ++.++. .+.... |
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 556667777776544 23445555667777777777533 444443 4556677777776543 555543 233333 4
Q ss_pred hccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEE
Q 017975 257 RMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIAL 297 (363)
Q Consensus 257 ~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~ 297 (363)
+.+.+.. .++.+.. ..+.++.+|+.+.+.++
T Consensus 337 ~~i~ip~-sv~~I~~---------~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 337 ERIAIPS-SVTKIPE---------SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEEECT-TCCBCCG---------GGGTTCTTCCEEEESSC
T ss_pred CEEEECc-ccCEEhH---------hHhhCCCCCCEEEECCc
Confidence 4444432 2333332 34566667776665543
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.35 E-value=0.45 Score=43.23 Aligned_cols=101 Identities=18% Similarity=0.374 Sum_probs=70.7
Q ss_pred cccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCC
Q 017975 159 EEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLH 235 (363)
Q Consensus 159 ~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~ 235 (363)
..+..++.+.+..+ +..+. .+.+++.|+.+.+. +.++.++...|.++.+|+.+++..+ ++.+. ..+.++.+|+
T Consensus 262 ~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 262 DSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCC
T ss_pred eecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCC
Confidence 34566777777543 23333 36788899999986 4577888888999999999999865 55553 4688899999
Q ss_pred EEEccCCCCCccch-hhhccc-hhccccCcC
Q 017975 236 HLDLSSTKVRGLPQ-ELKALV-LRMLHCGSN 264 (363)
Q Consensus 236 ~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~ 264 (363)
.+.+..+ ++.++. .+.... |+.+.+..+
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 9999654 777765 455555 666555443
No 165
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.75 E-value=0.38 Score=42.73 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=65.5
Q ss_pred CccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccccccccchHHHHHHHH-hhcC--CCCChhhhHHHhHhcCCCC
Q 017975 1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLK-FSYD--SLPNDELRSCLLYCCLFPE 77 (363)
Q Consensus 1 Iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~-~sy~--~L~~~~lk~cfl~~s~Fp~ 77 (363)
|++.|+|.|+++..++..+....+...|-. .+-... ...+...+. +.|+ .|++ ..+..+..+|+
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~--- 301 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAIN---QTLEYA------KKLILKEFENFLHGREIARK-RYLNIMRTLSK--- 301 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHH---HHHHHH------HHHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT---
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHH---HHHHHH------HHHHHHHHHHHhhccccccH-HHHHHHHHHHc---
Confidence 357899999999999987653233333321 110000 001111121 2222 5777 78999999998
Q ss_pred CcccChHHHHHHHH-HhCC-ccCcCHHHHHHHHHHhhcccCCCCceee-chhHHHH
Q 017975 78 DSEIRKTDLIVYWE-SEGL-LDSIGGWDVLGALVRACLLEEGGDHVKM-HDMIRDM 130 (363)
Q Consensus 78 ~~~~~~~~li~~w~-a~g~-~~~~~~~~~~~~L~~rsli~~~~~~~~m-hdl~~~~ 130 (363)
+. +...+..... ..|. +.......+++.|+++++|....+.|++ |.++++.
T Consensus 302 g~--~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 CG--KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp CB--CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred CC--CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence 22 4555443221 2342 2222267889999999999875566775 5566653
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=90.51 E-value=0.38 Score=43.75 Aligned_cols=96 Identities=18% Similarity=0.279 Sum_probs=58.8
Q ss_pred cccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEc
Q 017975 161 WEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDL 239 (363)
Q Consensus 161 ~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l 239 (363)
...++.+......+.. ..+..+.+|+.+.+..+ ++.+....|.++.+|+.+++..+ ++.++ ..+.++.+|+.+.+
T Consensus 275 ~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 275 CSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp CTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECC
T ss_pred ccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEE
Confidence 3445555444332211 13567778888888654 66677777888888888888654 55553 46777888888888
Q ss_pred cCCCCCccch-hhhccc-hhcccc
Q 017975 240 SSTKVRGLPQ-ELKALV-LRMLHC 261 (363)
Q Consensus 240 ~~~~l~~lP~-~i~~L~-L~~L~~ 261 (363)
..+ ++.++. .+.... |+.+.+
T Consensus 351 p~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 351 PLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp CTT-CCEECTTTBTTCTTCCEEEE
T ss_pred Ccc-ccEehHHHhhCCCCCCEEEE
Confidence 655 666654 333333 444433
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.80 E-value=0.5 Score=42.57 Aligned_cols=99 Identities=14% Similarity=0.232 Sum_probs=68.2
Q ss_pred cccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCC
Q 017975 159 EEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLH 235 (363)
Q Consensus 159 ~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~ 235 (363)
..+..++.+.+..+ ++.+. .+.++.+|+.+.+..+ +..++...|.++.+|+.+.+.++ .++.++ ..+.++.+|+
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCC
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccccc-ccceehhhhhcCCCCCC
Confidence 34567788887654 55554 3667888888888654 66777777889999999999877 566664 4677888999
Q ss_pred EEEccCCCCCccch-hhhccc-hhcccc
Q 017975 236 HLDLSSTKVRGLPQ-ELKALV-LRMLHC 261 (363)
Q Consensus 236 ~L~l~~~~l~~lP~-~i~~L~-L~~L~~ 261 (363)
.+.+..+ ++.++. .+.... |+.+.+
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 9988643 666654 344444 554433
No 168
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=87.50 E-value=0.61 Score=41.26 Aligned_cols=114 Identities=13% Similarity=0.055 Sum_probs=61.4
Q ss_pred ccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccccccccchHHHHHHHHhhcCCCCChhhhHHHhHhcCCCCCccc
Q 017975 2 ASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSEI 81 (363)
Q Consensus 2 v~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~lk~cfl~~s~Fp~~~~~ 81 (363)
++.|+|.|+++..++..+....+...|- +.+...... ....++. .+.+ . ++ ..+..+..+|+ + .+
T Consensus 232 ~~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~l~---~l~~-~-~~-~~~~~l~~la~---g-~~ 296 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTLEVAKG--LIMGELE---ELRR-R-SP-RYVDILRAIAL---G-YN 296 (350)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHHHHHHH--HHHHHHH---HHHH-H-CH-HHHHHHHHHHT---T-CC
T ss_pred HHHhCCCHHHHHHHHHHHhccccHhHHH---HHHHHHHHH--HHHHHHH---HHHh-C-Ch-hHHHHHHHHHh---C-CC
Confidence 5679999999999987653212222221 111110000 0011221 1222 2 55 78999999987 2 24
Q ss_pred ChHHHHHHHHHhC-CccCcCHHHHHHHHHHhhcccCCCCceeech-hHHHH
Q 017975 82 RKTDLIVYWESEG-LLDSIGGWDVLGALVRACLLEEGGDHVKMHD-MIRDM 130 (363)
Q Consensus 82 ~~~~li~~w~a~g-~~~~~~~~~~~~~L~~rsli~~~~~~~~mhd-l~~~~ 130 (363)
+...+.....+.. -+.......+++.|.+.++|....+.|++++ ++++.
T Consensus 297 ~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 297 RWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATV 347 (350)
T ss_dssp SHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHH
Confidence 5555555432221 1222225788999999999987446677644 55443
No 169
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=85.80 E-value=0.64 Score=37.85 Aligned_cols=80 Identities=19% Similarity=0.269 Sum_probs=37.3
Q ss_pred ccceEEEeecc-ccccc------CCCCCCCCccEEEeccCCcccc----chHHhcCCCCCCEEEcccCCCcc-----ccC
Q 017975 162 EGVKRISLMEN-EIQSL------PQIPTCPRLQTLLLEYNHIEEI----TESFFQSLPSLRVLNLSVNHYLT-----ELP 225 (363)
Q Consensus 162 ~~l~~L~l~~~-~~~~l------~~~~~l~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~~~~~~-----~lp 225 (363)
+.++.|++.++ .+..- ..+..-..|+.|+|++|.+... ....+..=+.|+.|+|++| .++ .+-
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala 119 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLL 119 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHH
Confidence 35566666553 43320 1123335566666666655421 1222344455666666666 332 122
Q ss_pred ccccCCCCCCEEEccCC
Q 017975 226 VGISSLVSLHHLDLSST 242 (363)
Q Consensus 226 ~~i~~L~~L~~L~l~~~ 242 (363)
+.+..-..|++|+|+++
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 23333445666666543
No 170
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=85.29 E-value=0.68 Score=37.69 Aligned_cols=65 Identities=12% Similarity=0.050 Sum_probs=43.9
Q ss_pred CCCCCccEEEeccC-Cccc----cchHHhcCCCCCCEEEcccCCCcc-----ccCccccCCCCCCEEEccCCCCCc
Q 017975 181 PTCPRLQTLLLEYN-HIEE----ITESFFQSLPSLRVLNLSVNHYLT-----ELPVGISSLVSLHHLDLSSTKVRG 246 (363)
Q Consensus 181 ~~l~~L~~L~l~~~-~l~~----~~~~~~~~l~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~l~~~~l~~ 246 (363)
.+-+.|+.|+|+++ .+.. .....+..-..|+.|+|++| .++ .+-+.+..=..|++|+|++|.|..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 34567888999875 6543 12233667778999999988 443 233344455779999999988764
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=67.03 E-value=2.9 Score=37.86 Aligned_cols=76 Identities=13% Similarity=-0.051 Sum_probs=44.7
Q ss_pred HHHHhhcCCCCChhhhHHHhHhcCCC--CCcccChHHHHHHHH--H---hCCc--cCcCHHHHHHHHHHhhcccC-----
Q 017975 51 SRLKFSYDSLPNDELRSCLLYCCLFP--EDSEIRKTDLIVYWE--S---EGLL--DSIGGWDVLGALVRACLLEE----- 116 (363)
Q Consensus 51 ~~L~~sy~~L~~~~lk~cfl~~s~Fp--~~~~~~~~~li~~w~--a---~g~~--~~~~~~~~~~~L~~rsli~~----- 116 (363)
..+.-++..||. +.+.++..++.+. .+..++..++...+. + .|.- .......++++|++.++|..
T Consensus 297 ~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~ 375 (412)
T 1w5s_A 297 SIQTHELEALSI-HELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGR 375 (412)
T ss_dssp ---CCSSSSSCH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC--
T ss_pred chHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccC
Confidence 345567789998 8899998888754 334556666555442 2 2321 11115678999999999976
Q ss_pred -CCCceeechhH
Q 017975 117 -GGDHVKMHDMI 127 (363)
Q Consensus 117 -~~~~~~mhdl~ 127 (363)
..+.+++|++.
T Consensus 376 ~~~g~~~~~~l~ 387 (412)
T 1w5s_A 376 GMRGRTTLFRLA 387 (412)
T ss_dssp -----CCEEEEC
T ss_pred CCCCceeEEEeC
Confidence 13345555554
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=60.43 E-value=6.3 Score=34.24 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=12.6
Q ss_pred HHHhCCccCcC--------HHHHHH-HHHHhhcccC
Q 017975 90 WESEGLLDSIG--------GWDVLG-ALVRACLLEE 116 (363)
Q Consensus 90 w~a~g~~~~~~--------~~~~~~-~L~~rsli~~ 116 (363)
-+..|++.... |..|+. ++++|++||+
T Consensus 289 ~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 289 LIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 34567765432 666776 6777777764
No 173
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=53.97 E-value=9.3 Score=19.05 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=15.9
Q ss_pred cccCCchhHHHHHHHHhcC
Q 017975 3 SQCHGLPLALETVGQAMAG 21 (363)
Q Consensus 3 ~~c~GlPLai~~ig~~L~~ 21 (363)
+|-.-+|||..+.++.+..
T Consensus 6 rkrrklplavav~agv~~a 24 (28)
T 2vda_B 6 RKRRKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCCCCTHHHHHHHHTTCC
T ss_pred eccccCchHHHHHHHHhHh
Confidence 5667899999999998865
No 174
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=32.32 E-value=44 Score=23.37 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=23.7
Q ss_pred CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccC
Q 017975 180 IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN 218 (363)
Q Consensus 180 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~ 218 (363)
|.++.+|+.+.+..+ ++.+....|.++.+|+.+.+.+.
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 556666776666654 45555555666666666666554
No 175
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=24.76 E-value=6.6 Score=24.42 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=17.9
Q ss_pred cCCCCCcccChHHHHHHHHHhCCccCcCHHHHHHHHHHhhcccC
Q 017975 73 CLFPEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEE 116 (363)
Q Consensus 73 s~Fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~L~~rsli~~ 116 (363)
+-|-+.|.++++++.. .++.|.++++|..
T Consensus 29 ~~~a~kygV~kdeV~~---------------~LrrLe~KGLI~l 57 (59)
T 2xvc_A 29 EHFSKVYGVEKQEVVK---------------LLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHCCCHHHHHH---------------HHHHHHHTTSEEE
T ss_pred HHHHHHhCCCHHHHHH---------------HHHHHHHCCCeec
Confidence 3344446666666544 3778888888763
No 176
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=24.51 E-value=1.1e+02 Score=19.84 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=20.8
Q ss_pred CCchhHHHHHHHHhcCCCChhHHHHHHHH
Q 017975 6 HGLPLALETVGQAMAGKEFPEEWRRAIEI 34 (363)
Q Consensus 6 ~GlPLai~~ig~~L~~~~~~~~W~~~~~~ 34 (363)
+|.|....++..+|.+ +.++.+..+..
T Consensus 1 ~~Cpal~~~v~~~l~~--s~~~Y~~~l~~ 27 (70)
T 1utg_A 1 GICPRFAHVIENLLLG--TPSSYETSLKE 27 (70)
T ss_dssp CCCHHHHHHHHHHHHS--CHHHHHHHHHT
T ss_pred CCchhHHHHHHHHhcC--CHHHHHHHHHh
Confidence 5789999999999998 66666664443
No 177
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=21.69 E-value=1.8e+02 Score=19.28 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=36.6
Q ss_pred CCchhHHHHHHHHhcCCCChhHHHHHHHHHhccccccccchHHHHHHHHhhcCCCCChhhhHHHhHh
Q 017975 6 HGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYC 72 (363)
Q Consensus 6 ~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~lk~cfl~~ 72 (363)
-+.|--+.+++..+......++++.+...+.......-..+ ++..+++-....++.++++..|..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~-El~~~l~~~g~~~~~~e~~~l~~~~ 74 (94)
T 2kz2_A 9 HGSSGENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAA-ELRHVMTNLGEKLTDEEVDEMIREA 74 (94)
T ss_dssp CCSSCCTHHHHHHHCCCSCHHHHHHHHHHHCTTCCSCBCHH-HHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHhcCCCHHHHHHHHHHHHCCCCcCcCCHH-HHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 34444455667777765677888888887765433322222 5555555443444443455555443
No 178
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=21.13 E-value=1.5e+02 Score=19.57 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=20.9
Q ss_pred cCCchhHHHHHHHHhcCCCChhHHHHHHH
Q 017975 5 CHGLPLALETVGQAMAGKEFPEEWRRAIE 33 (363)
Q Consensus 5 c~GlPLai~~ig~~L~~~~~~~~W~~~~~ 33 (363)
.+|.|....++..+|.+ +.++.+..+.
T Consensus 2 a~iCpal~~~v~~~l~~--s~~~Y~~~l~ 28 (77)
T 1ccd_A 2 SDICPGFLQVLEALLLG--SESNYEAALK 28 (77)
T ss_dssp TTSCHHHHHHHHHHTTS--CHHHHHHHHT
T ss_pred CccchhHHHHHHHHhcC--CHHHHHHHHH
Confidence 47899999999999988 5666666443
Done!