BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017976
         (363 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8C0D5|ETUD1_MOUSE Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus
            musculus GN=Eftud1 PE=2 SV=1
          Length = 1127

 Score = 33.9 bits (76), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 18/87 (20%)

Query: 212  AVTELLGKAGAVYSQRIQRLEREKMGLEGTHDDM---------------ADPMYNLSKAA 256
            A +++LG+  AV S+R  R+ +E+M  EGT  DM               AD +   +   
Sbjct: 998  ATSDVLGRVYAVLSKREGRVLQEEMK-EGT--DMFIIKAVLPVAESFGFADEIRKRTSGL 1054

Query: 257  VSPTRSFRGTSLVPSDHFVLPSSLEYY 283
             SP   F    ++PSD F +P++ E Y
Sbjct: 1055 ASPQLVFSHWEVIPSDPFWVPTTEEEY 1081


>sp|A0LV00|MIAB_ACIC1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B)
           GN=miaB PE=3 SV=1
          Length = 497

 Score = 33.1 bits (74), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 91  PVDFTSDLGARFAVHPSVLNMSHPPRLVSRIANGIASGLDAFFLNRFESHRAEYWQTLYS 150
           P DFT D+ A  A  P+V+   H P         + SG DA       S+R E +  + S
Sbjct: 261 PRDFTDDVIAAMAETPNVMPQLHMP---------LQSGSDAVLRRMRRSYRKEKYLDIIS 311

Query: 151 SVRFGAPYLILCSEDDDLAPYQVIYNFAQRL 181
            VR   P   + ++     P +   +FA+ L
Sbjct: 312 RVRSAIPDAAITTDIIVGFPGETEDDFAETL 342


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,358,940
Number of Sequences: 539616
Number of extensions: 6134056
Number of successful extensions: 13048
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 13047
Number of HSP's gapped (non-prelim): 8
length of query: 363
length of database: 191,569,459
effective HSP length: 119
effective length of query: 244
effective length of database: 127,355,155
effective search space: 31074657820
effective search space used: 31074657820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)