BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017979
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 174 bits (440), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 107/340 (31%), Positives = 178/340 (52%), Gaps = 29/340 (8%)
Query: 27 VKGLSEKGLKSLPKQFHQPLEER------FSEKRILDHVSIPLIDMSKWESPE------V 74
V+ L++ G+ S+PK++ +P EE F E++ D +P ID+ ES +
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 75 AKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYG 134
+ + A+ +WG ++NHG+P +++ERVK+A FF+L EEK KY+ + + YG
Sbjct: 67 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 135 SSFVPHVERALEWKD-FLSLFYVSEEETSAFWPPVCKDEM---LEYMRSSEVLIKRLMDV 190
S + LEW+D F L Y E+ + WP D + EY + +L ++
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 191 LVKGLNV------KRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILL 244
L GL + K + + E +L ++ +NYYP CP PEL +GV H+D+S T +L
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLL----QMKINYYPKCPQPELALGVEAHTDVSALTFIL 242
Query: 245 QDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRIS 304
+ + GL + + W+ + S++++IGD L+I+SNG+YKSI H + N + RIS
Sbjct: 243 HNMVPGLQLFYEG--KWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
Query: 305 VPLFVN-PKPEAILCPFPEVLANGEKPLYKPVLCADYSRH 343
+F PK + +L P PE+++ + P A + H
Sbjct: 301 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH 340
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 174 bits (440), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 107/340 (31%), Positives = 178/340 (52%), Gaps = 29/340 (8%)
Query: 27 VKGLSEKGLKSLPKQFHQPLEER------FSEKRILDHVSIPLIDMSKWESPE------V 74
V+ L++ G+ S+PK++ +P EE F E++ D +P ID+ ES +
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 65
Query: 75 AKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYG 134
+ + A+ +WG ++NHG+P +++ERVK+A FF+L EEK KY+ + + YG
Sbjct: 66 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 125
Query: 135 SSFVPHVERALEWKD-FLSLFYVSEEETSAFWPPVCKDEM---LEYMRSSEVLIKRLMDV 190
S + LEW+D F L Y E+ + WP D + EY + +L ++
Sbjct: 126 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 185
Query: 191 LVKGLNV------KRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILL 244
L GL + K + + E +L ++ +NYYP CP PEL +GV H+D+S T +L
Sbjct: 186 LSVGLGLEPDRLEKEVGGLEELLL----QMKINYYPKCPQPELALGVEAHTDVSALTFIL 241
Query: 245 QDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRIS 304
+ + GL + + W+ + S++++IGD L+I+SNG+YKSI H + N + RIS
Sbjct: 242 HNMVPGLQLFYEG--KWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 299
Query: 305 VPLFVN-PKPEAILCPFPEVLANGEKPLYKPVLCADYSRH 343
+F PK + +L P PE+++ + P A + H
Sbjct: 300 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH 339
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/340 (31%), Positives = 174/340 (51%), Gaps = 29/340 (8%)
Query: 27 VKGLSEKGLKSLPKQFHQPLEER------FSEKRILDHVSIPLIDMSKWESPE------V 74
V+ L++ G+ S+PK++ +P EE F E++ D +P ID+ ES +
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 75 AKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYG 134
+ + A+ +WG ++NHG+P ++ ERVK+A FF+L EEK KY+ + + YG
Sbjct: 67 IEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 135 SSFVPHVERALEWKD-FLSLFYVSEEETSAFWPPVCKDEM---LEYMRSSEVLIKRLMDV 190
S + LEW+D F L Y E+ + WP D + EY + +L ++
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 191 LVKGLNV------KRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILL 244
L GL + K + + E +L + +NYYP CP PEL +GV H+D+S T +L
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLL----QXKINYYPKCPQPELALGVEAHTDVSALTFIL 242
Query: 245 QDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRIS 304
+ + GL + + W+ + S++ +IGD L+I+SNG+YKSI H + N + RIS
Sbjct: 243 HNXVPGLQLFYEG--KWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
Query: 305 VPLFVN-PKPEAILCPFPEVLANGEKPLYKPVLCADYSRH 343
+F PK + +L P PE ++ + P A + H
Sbjct: 301 WAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEH 340
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 150/301 (49%), Gaps = 30/301 (9%)
Query: 60 SIPLIDMSKWESPEVAKS---ICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAE 116
+ P+I + K E A + I DA ENWGFF++VNHG+P EV + V++ T + E
Sbjct: 3 NFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXE 62
Query: 117 EKRKYSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWP-PVCKDEMLE 175
++ K S + V+ + D+ S F++ S P +E E
Sbjct: 63 QRFKE----------LVASKALEGVQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYRE 112
Query: 176 ----YMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRRVN----LNYYPMCPNPEL 227
+ + E L + L+D+L + L +++ + GS+ N ++ YP CP P+L
Sbjct: 113 VXRDFAKRLEKLAEELLDLLCENLGLEK--GYLKNAFYGSKGPNFGTKVSNYPPCPKPDL 170
Query: 228 TVGVGRHSDISTFTILLQDD-IGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGR 286
G+ H+D +L QDD + GL + KD WI V P S+++N+GD L++++NG+
Sbjct: 171 IKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPXRHSIVVNLGDQLEVITNGK 228
Query: 287 YKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVL---ANGEKPLYKPVLCADYSRH 343
YKS+ H VIA R S+ F NP +A++ P P ++ A K +Y + DY +
Sbjct: 229 YKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKL 288
Query: 344 F 344
+
Sbjct: 289 Y 289
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 13/247 (5%)
Query: 75 AKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSK-ENSPINNVRY 133
A+ + + E +GF + ++ + ++ ++ FFALP E K++Y+ + + +
Sbjct: 23 AQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPF 82
Query: 134 G---SSFVPHVERALEW---KDFLSLFYVSEEETSAFWP---PVCKDEMLEYMRSSEVLI 184
G + H + W +D WP P K ++ S +
Sbjct: 83 GVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXG 142
Query: 185 KRLMDVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILL 244
++++ + L ++R D + + G+ + L +YP P V G H DI+T T+LL
Sbjct: 143 GKVLEAIATYLKLER-DFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLL 201
Query: 245 QDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRIS 304
+ GGL V +G W+ + P G L+INIGD L+ ++N S H V+ N R
Sbjct: 202 GAEEGGLEVLDRDGQ-WLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVV-NPPPERRG 259
Query: 305 VPLFVNP 311
VP + P
Sbjct: 260 VPRYSTP 266
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 33/268 (12%)
Query: 69 WESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPI 128
+ + + AK ++ GF + NH + E++ER+ FF A+ + +++E
Sbjct: 9 YRAADSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRET--- 65
Query: 129 NNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFW---PPVCKDEMLEYMRSSEVLIK 185
+ + + + + KD ++V W P + +L Y + L
Sbjct: 66 -HDGFFPASISETAKGHTVKDIKEYYHVYP------WGRIPDSLRANILAYYEKANTLAS 118
Query: 186 RLMDVLVKGLNVKRIDEIRE------PMLLGSRRVNL----NYYPMCPNPEL-TVGVGRH 234
L++ + DEI+ P + + L +Y P + E + H
Sbjct: 119 ELLE----WIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAH 174
Query: 235 SDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCV 294
DI+ T+L + GL V+ +G+ W+ V G++IINIGD LQ S+G + S H V
Sbjct: 175 EDINLITVLPTANEPGLQVKAKDGS-WLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRV 233
Query: 295 I----ANGSQNRISVPLFVNPKPEAILC 318
I + +++RIS+PLF++P P +L
Sbjct: 234 INPEGTDKTKSRISLPLFLHPHPSVVLS 261
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 127/311 (40%), Gaps = 42/311 (13%)
Query: 62 PLIDMSKWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEK--- 118
PL + VA+ I A+ + GFF VNHG+ ++ L + + H ++ EEK
Sbjct: 16 PLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH--MSITPEEKWDL 73
Query: 119 --RKYSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEE---------ETSAFWP- 166
R Y+KE+ + VR G ++A+E +L+ + + WP
Sbjct: 74 AIRAYNKEHQ--DQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPD 131
Query: 167 ----PVCKDEMLEYMRS----SEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRRVNLNY 218
P +D +Y S L+K L K N +P + V + Y
Sbjct: 132 ETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENF--FARHFKPDDTLASVVLIRY 189
Query: 219 YPMCPNPELTVGVGR---------HSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISG 269
+ P PE + H D+S T+L Q ++ L V G I A +G
Sbjct: 190 PYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIE-ADDTG 248
Query: 270 SLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEK 329
L IN G + ++N YK+ H V ++ R S+P FVN ++++ PF NG K
Sbjct: 249 YL-INCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYDSVIDPFDPREPNG-K 305
Query: 330 PLYKPVLCADY 340
+P+ DY
Sbjct: 306 SDREPLSYGDY 316
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 127/311 (40%), Gaps = 42/311 (13%)
Query: 62 PLIDMSKWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEK--- 118
PL + VA+ I A+ + GFF VNHG+ ++ L + + H ++ EEK
Sbjct: 16 PLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH--MSITPEEKWDL 73
Query: 119 --RKYSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEE---------ETSAFWP- 166
R Y+KE+ + VR G ++A+E +L+ + + WP
Sbjct: 74 AIRAYNKEHQ--DQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPD 131
Query: 167 ----PVCKDEMLEYMRS----SEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRRVNLNY 218
P +D +Y S L+K L K N +P + V + Y
Sbjct: 132 ETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENF--FARHFKPDDTLASVVLIRY 189
Query: 219 YPMCPNPELTVGVGR---------HSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISG 269
+ P PE + H D+S T+L Q ++ L V G I A +G
Sbjct: 190 PYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIE-ADDTG 248
Query: 270 SLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEK 329
L IN G + ++N YK+ H V ++ R S+P FVN ++++ PF NG K
Sbjct: 249 YL-INCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYDSVIDPFDPREPNG-K 305
Query: 330 PLYKPVLCADY 340
+P+ DY
Sbjct: 306 SDREPLSYGDY 316
>pdb|1EKK|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKK|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKQ|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
pdb|1EKQ|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
Length = 272
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 264 VAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNP 311
+A I+G+L++NIG + +S+E +IA S N VP+ ++P
Sbjct: 55 MAKIAGALVLNIGTLSK-------ESVEAMIIAGKSANEHGVPVILDP 95
>pdb|1EYS|C Chain C, Crystal Structure Of Photosynthetic Reaction Center From A
Thermophilic Bacterium, Thermochromatium Tepidum
Length = 382
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 18/113 (15%)
Query: 22 HKGHGVKGLSEKGLKSLPKQFHQPLE-------------ERFSEKRILDHVSI-----PL 63
++G G++ K ++L Q +QP+E E + ++L +S+ +
Sbjct: 13 YRGVGMENYYVKRQRALSIQANQPVESLPAADSTGPKASEVYQSVQVLKDLSVGEFTRTM 72
Query: 64 IDMSKWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAE 116
+ ++ W SP+ + C NW I V + E V+ A + A AE
Sbjct: 73 VAVTTWVSPKEGCNYCHVPGNWASDDIYTKVVSRRMFELVRAANSDWKAHVAE 125
>pdb|1ESJ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESQ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate
Length = 284
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 264 VAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNP 311
+A I+G+L++NIG + +S+E +IA S N VP+ ++P
Sbjct: 67 MAKIAGALVLNIGTLSK-------ESVEAMIIAGKSANEHGVPVILDP 107
>pdb|1C3Q|A Chain A, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|B Chain B, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|C Chain C, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
Length = 284
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 264 VAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNP 311
+A I+G+L++NIG + +S+E +IA S N VP+ ++P
Sbjct: 67 MAKIAGALVLNIGTLSK-------ESVEAMIIAGKSANEHGVPVILDP 107
>pdb|3C6L|B Chain B, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
pdb|3C6L|F Chain F, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
Length = 236
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 20 VIHKGHGVKGLSEKGLKSLPKQFHQPLEERFSEKRILDHVSIPLIDMSKWESPEVAKSIC 79
+IH +G G +EKG + +P +E FS ++ ++ P + + C
Sbjct: 43 LIHYSYGA-GSTEKGDIPDGYKASRPSQENFS---LILELATP---------SQTSVYFC 89
Query: 80 DAAENWGFFQIVNHGVPLEVLERVKEAT 107
+ + WG+ Q G L VLE +++ T
Sbjct: 90 ASGDAWGYEQYFGPGTRLTVLEDLRDVT 117
>pdb|1NFD|B Chain B, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
pdb|1NFD|D Chain D, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
Length = 239
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 46 LEERFSEKRILDHVSIPLIDMSKWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKE 105
L RFS ++ D+ S ++MS E + A C ++ WG Q G L VLE ++
Sbjct: 60 LPSRFSVQQFDDYHS--EMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRN 117
Query: 106 AT 107
T
Sbjct: 118 VT 119
>pdb|3Q5Y|A Chain A, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
pdb|3Q5Y|B Chain B, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
pdb|3Q5Y|C Chain C, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
pdb|3Q5Y|D Chain D, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
Length = 240
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 46 LEERFSEKRILDHVSIPLIDMSKWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKE 105
L RFS ++ D+ S ++MS E + A C ++ WG Q G L VLE ++
Sbjct: 61 LPSRFSVQQFDDYHS--EMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRN 118
Query: 106 AT 107
T
Sbjct: 119 VT 120
>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin
Length = 223
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 245 QDDIGGLHVRKDNGTDWIHVAPIS 268
Q D GG RKDN +WI V +S
Sbjct: 169 QGDSGGPMFRKDNADEWIQVGIVS 192
>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin
At 1.7 Angstroms Resolution
Length = 223
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 245 QDDIGGLHVRKDNGTDWIHVAPIS 268
Q D GG RKDN +WI V +S
Sbjct: 169 QGDSGGPMFRKDNADEWIQVGIVS 192
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 175 EYMRSSEVLIKRLMDVLVKGLNVKRI--DEIREPMLLGSRRVNLNYYPMCPNPELTVGVG 232
E ++ +E+ +K L ++L+K V+R +E++E L G+ RV L P N E
Sbjct: 24 EKIKDTELGMKELNEILIKEETVRRTLHNELQE--LRGNIRVYLRIRPALKNLE------ 75
Query: 233 RHSDISTFTILLQDDIGG---LHVRKDNGTDWIH 263
+SD S + DD G + V K T +H
Sbjct: 76 -NSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVH 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,634,718
Number of Sequences: 62578
Number of extensions: 496041
Number of successful extensions: 1300
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1266
Number of HSP's gapped (non-prelim): 22
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)