BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017980
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%)
Query: 1 MIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEEL 60
MI AR++EREYF+ + +Y HLA KMGSE+LAK+LSKHLE VI+SRIP I SLINK++ EL
Sbjct: 254 MIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLEL 313
Query: 61 ESEMDHLGRPIA 72
E+E+ LG+PIA
Sbjct: 314 ETELSRLGKPIA 325
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 24/28 (85%)
Query: 332 DPAMMERRLQCAKRLELYKAARDEIDSV 359
DPA+MERR +KRLELY+AA+ EID+V
Sbjct: 333 DPAIMERRSAISKRLELYRAAQSEIDAV 360
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 112/263 (42%), Gaps = 16/263 (6%)
Query: 8 EREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHL 67
ER++F + P Y HLA +MG+ YL K+L++ L + IR +P + + + + +E E++
Sbjct: 252 ERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEY 311
Query: 68 GRPIAVDAGAQLYTILELCRAFDRIFKEHLDGG--------RPGGDRIYGVFDNQLPAAL 119
D + +L++ + F F++ ++G GG RI +F + P L
Sbjct: 312 KNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFEL 371
Query: 120 RKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFV 179
K+ FD + + + A L P+ + +++ + R P D V
Sbjct: 372 VKMEFDEKELRREISYAIKNAAAAATGLFTPDMAFETIVKKQVKKIREPCLKCVD---MV 428
Query: 180 LKELVRKSIGETQELKRFPTLQXXXXXXXXXXXXRFRDEGRKTVIRLVDMEASYLTVEF- 238
+ EL+ T++L+++P L+ ++ V+ L+D+E +Y+
Sbjct: 429 ISELISTVRQCTKKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNHE 488
Query: 239 ----FRKLPQEVEKAGNPGNSGN 257
F Q + SGN
Sbjct: 489 DFIGFANAQQRSNQMNKKKTSGN 511
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 230 EASYLTVEFFRKLPQEVEKAGNPGNSG-NTASQAVDRYSDGHFRRIGSNVSSYVGMVSET 288
+AS+L + + + EKA +G ++ ++D + I + V SY+ +V++T
Sbjct: 614 KASFLRAGVYPERVGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKT 673
Query: 289 LRTTIPKAIVYCQVREAK 306
+R +PK I++ + K
Sbjct: 674 VRDLMPKTIMHLMINNTK 691
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 112/263 (42%), Gaps = 16/263 (6%)
Query: 8 EREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHL 67
ER++F + P Y HLA +MG+ YL K+L++ L + IR +P + + + + +E E+D
Sbjct: 275 ERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEY 334
Query: 68 GRPIAVDAGAQLYTILELCRAFDRIFKEHLDGG--------RPGGDRIYGVFDNQLPAAL 119
D + +L++ + F F++ ++G GG RI +F + P L
Sbjct: 335 KNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFEL 394
Query: 120 RKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFV 179
K+ FD + + + + L P+ + ++ + + P+ D V
Sbjct: 395 VKMEFDEKELRREISYAIKNIHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSE 454
Query: 180 LKELVRKSIGETQELKRFPTLQXXXXXXXXXXXXRFRDEGRKTVIRLVDMEASYLTVEF- 238
L +RK +++L+++P L+ ++ V+ L+D+E +Y+
Sbjct: 455 LTSTIRKC---SEKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNHE 511
Query: 239 ----FRKLPQEVEKAGNPGNSGN 257
F Q + SGN
Sbjct: 512 DFIGFANAQQRSNQMNKKKTSGN 534
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 230 EASYLTVEFFRKLPQEVEKAGNPGNSG-NTASQAVDRYSDGHFRRIGSNVSSYVGMVSET 288
+AS+L + + + EKA +G ++ ++D + I + V SY+ +V++T
Sbjct: 637 KASFLRAGVYPERVGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKT 696
Query: 289 LRTTIPKAIVYCQVREAK 306
+R +PK I++ + K
Sbjct: 697 VRDLMPKTIMHLMINNTK 714
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 8 EREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMD 65
ER++F + P Y HLA +MG+ YL K+L++ L + IR +P + + + + +E E++
Sbjct: 255 ERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVE 312
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 1 MIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEEL 60
+ A ER++F + P Y HLA + G+ YL K+L++ L + IR +P + + + + +
Sbjct: 248 ITAALAAERKFFLSHPSYRHLADRXGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSI 307
Query: 61 ESEMD 65
E E++
Sbjct: 308 EKEVE 312
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 1 MIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSI 49
+ A ER++F + P Y HLA +MG+ YL K+L++ L + IR +P +
Sbjct: 243 ITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGL 291
>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|B Chain B, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|C Chain C, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|D Chain D, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
Length = 319
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 4 ARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPS 48
A ER++F + P Y H+A +MG+ +L K+L++ L + IR +P+
Sbjct: 264 AMLAERKFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPN 308
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 2 IVARRKERE-------YFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLIN 54
I+A++ RE YF P Y +A + G+ YL+K L+K L IR +P + ++
Sbjct: 243 IIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVS 302
Query: 55 KSIEELESEM 64
K + +++ E+
Sbjct: 303 KMLSDVQGEL 312
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With
Adenosine-5- Diphosphoribose
Length = 221
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 41 VIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYT 81
++ SR P SL+ K+ EL+ E+D +G+ +AV G L T
Sbjct: 64 LVLSRGPLSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKT 104
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
Deinococcus Radiodurans
Length = 851
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 19/85 (22%)
Query: 92 IFKEHLDG--GRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIA 149
+ ++ DG G PGG R+ A+R +P R L + E D + P A
Sbjct: 411 VVRDSPDGLVGMPGGGRV------APEEAVRDVPLTRELYI--------ERDDFSP---A 453
Query: 150 PEQGYRRLIEGSLSYFRGPAEASAD 174
P +G++RL G RG AD
Sbjct: 454 PPKGFKRLTPGGTVRLRGAGIIRAD 478
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,187,318
Number of Sequences: 62578
Number of extensions: 401625
Number of successful extensions: 913
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 897
Number of HSP's gapped (non-prelim): 15
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)