Query 017980
Match_columns 363
No_of_seqs 136 out of 880
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01031 Dynamin_M: Dynamin ce 100.0 1.7E-50 3.7E-55 379.3 21.0 234 1-236 33-275 (295)
2 KOG0446 Vacuolar sorting prote 100.0 8.7E-48 1.9E-52 389.0 35.4 358 1-362 250-656 (657)
3 PF02212 GED: Dynamin GTPase e 99.9 4.1E-22 8.9E-27 154.0 11.1 88 270-359 5-92 (92)
4 smart00302 GED Dynamin GTPase 99.9 1E-20 2.2E-25 145.7 12.3 89 269-359 4-92 (92)
5 COG0699 Predicted GTPases (dyn 97.5 0.11 2.4E-06 52.7 26.7 319 3-354 159-542 (546)
6 cd05131 RasGAP_IQGAP2 IQGAP2 i 89.7 2.7 5.8E-05 40.3 9.8 207 8-231 29-262 (339)
7 PF04583 Baculo_p74: Baculovir 76.1 3.8 8.3E-05 37.0 4.1 56 9-64 13-68 (249)
8 cd05133 RasGAP_IQGAP1 IQGAP1 i 75.5 19 0.00042 34.8 9.0 205 8-231 29-262 (360)
9 cd05127 RasGAP_IQGAP_related T 73.7 32 0.00068 32.7 10.1 197 11-229 31-254 (325)
10 PF15011 CK2S: Casein Kinase 2 69.9 36 0.00079 29.1 8.6 73 156-229 8-86 (168)
11 PF02344 Myc-LZ: Myc leucine z 65.4 5.1 0.00011 23.8 1.6 27 326-352 4-30 (32)
12 PRK09343 prefoldin subunit bet 63.5 28 0.0006 28.0 6.3 56 42-105 65-120 (121)
13 cd05132 RasGAP_GAPA GAPA is an 58.4 1.7E+02 0.0037 27.9 12.4 199 8-230 28-256 (331)
14 cd05395 RasGAP_RASA4 Ras GTPas 48.7 96 0.0021 29.7 8.2 201 8-230 72-284 (337)
15 PF08429 PLU-1: PLU-1-like pro 41.6 3.1E+02 0.0067 25.9 13.1 115 58-174 89-226 (335)
16 cd05130 RasGAP_Neurofibromin N 40.4 2E+02 0.0043 27.5 9.0 190 8-227 69-263 (329)
17 PF03613 EIID-AGA: PTS system 38.8 22 0.00047 32.9 2.1 20 2-21 51-70 (264)
18 PF05823 Gp-FAR-1: Nematode fa 38.6 87 0.0019 26.3 5.6 60 37-103 44-103 (154)
19 KOG1895 mRNA cleavage and poly 37.7 6E+02 0.013 28.1 13.0 188 23-232 703-898 (957)
20 PF13080 DUF3926: Protein of u 37.0 62 0.0013 20.7 3.2 33 41-73 2-35 (44)
21 PF02477 Nairo_nucleo: Nucleoc 36.0 32 0.0007 32.7 2.8 93 16-118 216-316 (442)
22 cd05136 RasGAP_DAB2IP The DAB2 34.9 1.5E+02 0.0032 28.1 7.1 183 7-228 65-255 (309)
23 PRK11103 PTS system mannose-sp 34.2 28 0.0006 32.5 2.1 20 2-21 62-81 (282)
24 PF02179 BAG: BAG domain; Int 33.8 1.8E+02 0.004 20.9 6.2 33 324-356 42-75 (76)
25 cd05135 RasGAP_RASAL Ras GTPas 33.5 4.2E+02 0.009 25.4 10.0 201 7-231 72-286 (333)
26 COG2361 Uncharacterized conser 33.5 62 0.0013 25.9 3.6 39 17-61 68-114 (117)
27 PRK09855 PTS system N-acetylga 33.4 29 0.00063 32.0 2.1 20 2-21 54-73 (263)
28 cd05137 RasGAP_CLA2_BUD2 CLA2/ 32.4 3.1E+02 0.0066 27.0 9.0 188 8-230 131-332 (395)
29 cd05391 RasGAP_p120GAP p120GAP 31.2 4.2E+02 0.009 25.1 9.5 184 8-229 64-257 (315)
30 TIGR00828 EIID-AGA PTS system, 30.3 35 0.00076 31.6 2.1 20 2-21 52-71 (271)
31 PF15296 Codanin-1_C: Codanin- 29.5 1.3E+02 0.0027 24.3 4.8 51 5-59 69-120 (121)
32 KOG0447 Dynamin-like GTP bindi 26.4 7.5E+02 0.016 25.7 13.2 46 1-46 532-580 (980)
33 PF05008 V-SNARE: Vesicle tran 26.4 1.5E+02 0.0032 21.4 4.5 47 49-95 26-72 (79)
34 PF13864 Enkurin: Calmodulin-b 25.2 3.1E+02 0.0067 20.9 6.7 34 325-358 62-95 (98)
35 PF10167 NEP: Uncharacterised 22.8 1.1E+02 0.0023 24.6 3.3 27 38-65 35-61 (118)
36 PF09597 IGR: IGR protein moti 22.7 2E+02 0.0044 19.8 4.2 39 48-91 18-56 (57)
37 KOG0809 SNARE protein TLG2/Syn 20.4 6.5E+02 0.014 23.6 8.2 54 15-68 56-124 (305)
38 COG0783 Dps DNA-binding ferrit 20.1 3.7E+02 0.0079 22.7 6.2 48 28-75 14-82 (156)
39 PF00616 RasGAP: GTPase-activa 20.1 3.3E+02 0.0071 23.2 6.2 89 9-98 17-118 (197)
No 1
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=1.7e-50 Score=379.27 Aligned_cols=234 Identities=31% Similarity=0.512 Sum_probs=217.4
Q ss_pred CHHHHHHHHHHhccCCCchhhhcccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHH
Q 017980 1 MIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLY 80 (363)
Q Consensus 1 ~~~A~~~E~~FF~~~~~w~~l~~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~ 80 (363)
+++|++.|.+||++||+|+..+++|||++|+.+|+++|++||+++||.|+.+|+++|.+++++|+.||+++++++.+++.
T Consensus 33 ~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~ 112 (295)
T PF01031_consen 33 IEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSLKSEIQKKLQEAEKELKRLGPPRPETPEEQRA 112 (295)
T ss_dssp HHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHCSSSCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 46899999999999999999779999999999999999999999999999999999999999999999999977899999
Q ss_pred HHHHHHHHHHHHHHhhccCCCC---------CccchhhhhhcchhHhcccCCCCcccCHHhHHHHHHhccCCCCCCCCcH
Q 017980 81 TILELCRAFDRIFKEHLDGGRP---------GGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPE 151 (363)
Q Consensus 81 ~L~~~~~~f~~~~~~~l~G~~~---------gg~ri~~~f~~~f~~~l~~~~~~~~~~~~~I~~~i~~~~G~e~~~f~p~ 151 (363)
+|++++++|++.++++++|.|. ||+||+++|++.|...+..+++.+.+++++|++++++++|+++|+|.|+
T Consensus 113 ~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~ 192 (295)
T PF01031_consen 113 YLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLEKIDPFEDLSDEEIRTAIRNSRGRELPGFVPE 192 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH--S-SSS-SCCH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHhhcccccccchhH
Confidence 9999999999999999999985 5899999999999999888888888999999999999999999999999
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017980 152 QGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEA 231 (363)
Q Consensus 152 ~~~~~L~~~qi~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~~~i~~li~~E~ 231 (363)
.+|+.|+++|+++|++||.+|++.|++.+.+++..++. .+|.+||.|++++.+++.++++++.++|.++|+++++||+
T Consensus 193 ~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~--~~~~~fp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~ 270 (295)
T PF01031_consen 193 SAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLE--KEFERFPNLKEAIKEAVQQLLEECREPAKEMIENLIDMEL 270 (295)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC--HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcc--hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999885 6999999999999999999999999999999999999999
Q ss_pred cCCCh
Q 017980 232 SYLTV 236 (363)
Q Consensus 232 ~~i~t 236 (363)
+||||
T Consensus 271 ~~i~T 275 (295)
T PF01031_consen 271 SYINT 275 (295)
T ss_dssp TS--T
T ss_pred ccCCC
Confidence 99999
No 2
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=8.7e-48 Score=388.98 Aligned_cols=358 Identities=32% Similarity=0.440 Sum_probs=311.5
Q ss_pred CHHHHHHHHHHhccCCCchhhhcccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHH
Q 017980 1 MIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLY 80 (363)
Q Consensus 1 ~~~A~~~E~~FF~~~~~w~~l~~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~ 80 (363)
|.+|+.+|..||.+||.|+.+..++|+++|+++|+..|..||+++||.|+..|+.++.+++++|..||. +++..+...
T Consensus 250 ~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~~~g~--~~~~~~~~~ 327 (657)
T KOG0446|consen 250 ILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDELNRIGA--VDVDLANSA 327 (657)
T ss_pred HHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcc--cCCccchhh
Confidence 468999999999999999999988999999999999999999999999999999999999999999997 222345566
Q ss_pred HHHHHHHHHHHHHHhhccCCC--------CCccchhhhhhcchhHhcccCCCCcccCHHhHHHHHHhccCCCCCCCCcHH
Q 017980 81 TILELCRAFDRIFKEHLDGGR--------PGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQ 152 (363)
Q Consensus 81 ~L~~~~~~f~~~~~~~l~G~~--------~gg~ri~~~f~~~f~~~l~~~~~~~~~~~~~I~~~i~~~~G~e~~~f~p~~ 152 (363)
.++.+++.|+..+...+.|.. +||+|++++|++.|+..+..+++.+.++..+|++++.+++|++|++|.|+.
T Consensus 328 ~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i~~~~G~~~~lf~p~~ 407 (657)
T KOG0446|consen 328 ALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLVSEASGIRPSLFVPES 407 (657)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHHHhccCCCccccCChH
Confidence 899999999999999988862 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017980 153 GYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEAS 232 (363)
Q Consensus 153 ~~~~L~~~qi~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~~~i~~li~~E~~ 232 (363)
+|+.+++.|++.+++|+.+|++.|+.++...+++|... ..+.+||.|+..+..++.+++.++.+++++++..+++||.+
T Consensus 408 afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~-~~l~rfp~l~~~~~~~~~~~~~~~~~~t~~~v~~~i~~e~~ 486 (657)
T KOG0446|consen 408 SFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRA-TELKRFPVLYSELVEIASSLIAEGLDETKKAVKNLIDLEQS 486 (657)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999852 27999999999999999999999999999999999999999
Q ss_pred CCCh---hhcccchhhhh--h-----------------hCCCCCCC----CC--------CCcc-------ccCCCchHH
Q 017980 233 YLTV---EFFRKLPQEVE--K-----------------AGNPGNSG----NT--------ASQA-------VDRYSDGHF 271 (363)
Q Consensus 233 ~i~t---d~~~~~~~~~~--~-----------------~~~~~~~~----~~--------~~~~-------~~~~~~~~~ 271 (363)
|+|| ||+....+... . .+.+.... .+ .++. .+.....++
T Consensus 487 yinT~h~df~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (657)
T KOG0446|consen 487 YLNTDHPDFRSLTDSALSSVTSPSIAAMKLISAQLLKEELGECNSALKAIKNAVGSIRLDPSDIVLSRALVLKKRECKET 566 (657)
T ss_pred HhcCcChhhhhhHHHHHHHhhcccccccccccccccccccccccchhhhhcchhhhhhhcccchhhhhhhhcchhhhHHH
Confidence 9998 45543321111 0 00000000 00 0000 111112246
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHhhhhCCCHHHHHHHHHHHHHHHHHHH
Q 017980 272 RRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKA 351 (363)
Q Consensus 272 ~~i~~~~~aYy~va~krf~D~Vp~~I~~~Lv~~~~~~l~~~l~~~L~~~~~~~~~~ll~Ed~~~~~~R~~L~~~~~~L~~ 351 (363)
+.|..++.+||.++.++++|+||++|+++||+.+.+.|+.+|+..|+. +.++++.|+.|+|.++.+|+.+++++..|++
T Consensus 567 ~~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~-~~~~~~~ll~E~~~i~~~R~~~~~~l~~L~~ 645 (657)
T KOG0446|consen 567 EEISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYA-GDEQLESLLKEDPRIKRRRELQQKRLLALQK 645 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999999999999999999999999 2479999999999999999999999999999
Q ss_pred HHHHhhhhccC
Q 017980 352 ARDEIDSVSWA 362 (363)
Q Consensus 352 A~~~L~~~~~~ 362 (363)
|..++..+.++
T Consensus 646 a~~ii~~~~~~ 656 (657)
T KOG0446|consen 646 ALSILATVAQA 656 (657)
T ss_pred HHHHHHHHhcc
Confidence 99999998775
No 3
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.88 E-value=4.1e-22 Score=153.99 Aligned_cols=88 Identities=27% Similarity=0.437 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHhhhhCCCHHHHHHHHHHHHHHHHH
Q 017980 270 HFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELY 349 (363)
Q Consensus 270 ~~~~i~~~~~aYy~va~krf~D~Vp~~I~~~Lv~~~~~~l~~~l~~~L~~~~~~~~~~ll~Ed~~~~~~R~~L~~~~~~L 349 (363)
++++|++.+.|||+||+|||+|+|||+|+++||+.+.+.|+.+|+..|+..+ .+++||+|||+++++|+.|.+++++|
T Consensus 5 ~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~--~~~~Ll~Ed~~i~~kR~~l~~~~~~L 82 (92)
T PF02212_consen 5 EVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEE--DLEELLQEDPEIAEKREELKKKLERL 82 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG--GCCCCT--GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchH--HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999973 49999999999999999999999999
Q ss_pred HHHHHHhhhh
Q 017980 350 KAARDEIDSV 359 (363)
Q Consensus 350 ~~A~~~L~~~ 359 (363)
++|.++|.+|
T Consensus 83 ~~A~~~L~~~ 92 (92)
T PF02212_consen 83 KKAQQILSEV 92 (92)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHcC
Confidence 9999999875
No 4
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.85 E-value=1e-20 Score=145.73 Aligned_cols=89 Identities=42% Similarity=0.581 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHhhhhCCCHHHHHHHHHHHHHHHH
Q 017980 269 GHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLEL 348 (363)
Q Consensus 269 ~~~~~i~~~~~aYy~va~krf~D~Vp~~I~~~Lv~~~~~~l~~~l~~~L~~~~~~~~~~ll~Ed~~~~~~R~~L~~~~~~ 348 (363)
.+++.|..++.+||+|++|++.|+|||+|+||||+.+.+.|+.+|++.||.. +.+++||.|||+++++|+.|.+++++
T Consensus 4 ~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~--~~~~~LL~E~~~i~~kR~~~~~~l~~ 81 (92)
T smart00302 4 SELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKE--ELLDELLEEDPEIASKRKELKKRLEL 81 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCc--ccHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999996 57999999999999999999999999
Q ss_pred HHHHHHHhhhh
Q 017980 349 YKAARDEIDSV 359 (363)
Q Consensus 349 L~~A~~~L~~~ 359 (363)
|++|.++|+.+
T Consensus 82 L~~A~~~l~~v 92 (92)
T smart00302 82 LKKARQIIAAV 92 (92)
T ss_pred HHHHHHHHhcC
Confidence 99999999864
No 5
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=97.48 E-value=0.11 Score=52.74 Aligned_cols=319 Identities=19% Similarity=0.171 Sum_probs=204.0
Q ss_pred HHHHHHHHHhccCCCchhhhcccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHH
Q 017980 3 VARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTI 82 (363)
Q Consensus 3 ~A~~~E~~FF~~~~~w~~l~~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~~L 82 (363)
.+...|..+|..||.|.+....+|++++...+++.+..|+....|............ .++++ .+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~----------~~ 222 (546)
T COG0699 159 EALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN----------EV 222 (546)
T ss_pred HHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch----------HH
Confidence 356778999999999999999999999999999999999999999888777766654 33322 34
Q ss_pred HHHHHHHHHHHHhhccCCCCCccchhhhhhcchhHhcccCCCCcccCHHhHHHHHHhccCCCCCCCCcHHHHHHHHHHHh
Q 017980 83 LELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSL 162 (363)
Q Consensus 83 ~~~~~~f~~~~~~~l~G~~~gg~ri~~~f~~~f~~~l~~~~~~~~~~~~~I~~~i~~~~G~e~~~f~p~~~~~~L~~~qi 162 (363)
+.....|...++... +|+++... ...+.+...+....+.....++.|..+..|.+...+..++..++
T Consensus 223 ~~~~~~~~~~~~~~~-----~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 289 (546)
T COG0699 223 LAVIQTLLKRLSELV-----RGARIRLN--------IILFSDLEEVSDSPVLLKELASKGERPSLLSGLTLLDTLVETPI 289 (546)
T ss_pred HHHHHHHHHHHHHHh-----ccchhhhh--------hcccchHHHhhhhhhHHHHHcccCCCccccccccchhhhhHHHH
Confidence 555666666666333 34443322 00111111233345566667777877778888888999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh---hhc
Q 017980 163 SYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTV---EFF 239 (363)
Q Consensus 163 ~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~~~i~~li~~E~~~i~t---d~~ 239 (363)
.....+..+|+..+...+..+...... ......||.+...+...+.+............+...++.+..|+++ ++.
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (546)
T COG0699 290 GQFDTQINQLLRKLISELVRILLKELE-SASSSPFPKLSEALEEVVNQLKNKVDSGLESGLLAIIDIEERYINTKHPLFL 368 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccchhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCcchH
Confidence 988888875555444444443222221 2345778999998888888877788888888888888888888764 111
Q ss_pred c--c----chhh---h-------hhhCC-CC----CCC---------C-----------------CC-Cc--c-------
Q 017980 240 R--K----LPQE---V-------EKAGN-PG----NSG---------N-----------------TA-SQ--A------- 262 (363)
Q Consensus 240 ~--~----~~~~---~-------~~~~~-~~----~~~---------~-----------------~~-~~--~------- 262 (363)
. . +... . ...+. .. ... . .. .. .
T Consensus 369 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (546)
T COG0699 369 SLRQAAAILSKVLDNLEALLRSLDDSRLRELSDMGLNSLLSNNLEEHLLGSDFSLYKFLNEFLELKKLDALLATLGEALR 448 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhhcccchhHHHHHHHHhhcchhhHHHHHHHHhhhccchhhhccchHHHH
Confidence 1 0 0000 0 00000 00 000 0 00 00 0
Q ss_pred -ccC-CCc---hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHhhhhCCCHHHHH
Q 017980 263 -VDR-YSD---GHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMME 337 (363)
Q Consensus 263 -~~~-~~~---~~~~~i~~~~~aYy~va~krf~D~Vp~~I~~~Lv~~~~~~l~~~l~~~L~~~~~~~~~~ll~Ed~~~~~ 337 (363)
... .+. .....+...+.+| ......+.|.|++.+...+...............++.. ...+.+..+.+.+..
T Consensus 449 ~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~ 525 (546)
T COG0699 449 RLTGLLPERKTLEKQLIKSLLESL-LILAQKIRDSVLKAIFELLKNKRKRLAQKQRLKRLYLE--QLEDELLRTAEEILE 525 (546)
T ss_pred HhhcccchhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHH
Confidence 000 000 0123456789999 99999999999999998885555544444443443333 456777777788888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017980 338 RRLQCAKRLELYKAARD 354 (363)
Q Consensus 338 ~R~~L~~~~~~L~~A~~ 354 (363)
.+..+.+..+.+..+..
T Consensus 526 ~~~~~~~~~~~~~~~~~ 542 (546)
T COG0699 526 LRLLLEQFLEALKLAAR 542 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888887777654
No 6
>cd05131 RasGAP_IQGAP2 IQGAP2 is a member of the IQGAP family that contains a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeat, a single WW domain, four IQ motifs which mediate interactions with calmodulin, and a Ras-GTPase-activating protein (GAP)-related domain that binds Rho family GTPases. IQGAP2 and IQGAP3 play important roles in the regulation of the cytoskeleton for axon outgrowth in hippocampal neurons and are thought to stay in a common regulatory pathway. The results of RNA interference studies indicated that IQGAP3 partially compensates functions of IQGAP2, but has lesser ability than IQGAP2 to promote axon outgrowth in hippocampal neuron. Morevover, IQGAP2 is required for the cadherin-mediated cell-to-cell adhesion in Xenopus laevis embryos.
Probab=89.73 E-value=2.7 Score=40.32 Aligned_cols=207 Identities=15% Similarity=0.191 Sum_probs=103.2
Q ss_pred HHHHhccCCCchhhh----c-ccChHHHHHHHHHHHHHHHHc-cC-----h-hHHHHHHHHHHHHHHHHhhcCCCCCC--
Q 017980 8 EREYFATSPDYGHLA----G-KMGSEYLAKLLSKHLESVIRS-RI-----P-SITSLINKSIEELESEMDHLGRPIAV-- 73 (363)
Q Consensus 8 E~~FF~~~~~w~~l~----~-r~G~~~L~~~Ls~lL~~~I~~-~L-----P-~l~~eI~~~l~~~~~eL~~Lg~~~~~-- 73 (363)
...||+.++.|..+- . -.|..+|+.-|..++.+.|.. .| | .|-+++-.+......+...++...+.
T Consensus 29 ~~d~~r~Ns~~~km~~~y~r~~~g~~yLk~lL~p~v~~ii~~~~ldlE~dP~~Iy~~~i~~~e~~tG~~S~~~~~v~~e~ 108 (339)
T cd05131 29 IQDIVTGNPTVIKMVVSFNRGARGQNTLRQLLAPVVKEIIEDKSLIINTNPVEVYKAWVNQLETATGEASKLPYDVTTEQ 108 (339)
T ss_pred HHHHhccCcHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhcCcccCCcCCHHHHHHHHHHHHHHhhCCcccCCCCCCHHH
Confidence 577899999999963 3 378889999888888886642 22 2 23333322222222222233332221
Q ss_pred ---Chh------HHHHHHHHHHHHHHHHHHhhccCCCCCccchhhhhhcchhHhcccCCCCcccCHHhHHHHHHh---cc
Q 017980 74 ---DAG------AQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSE---AD 141 (363)
Q Consensus 74 ---~~~------~~~~~L~~~~~~f~~~~~~~l~G~~~gg~ri~~~f~~~f~~~l~~~~~~~~~~~~~I~~~i~~---~~ 141 (363)
+|. .....|..+++.|.+.+.+.++ ....|- +++++..+.....+.|. .+.+++..++-. .|
T Consensus 109 Ai~~pev~~~~~~~l~~L~~~~~~fl~~I~~sv~-~~P~~l--R~ick~i~~~~~~kFP~---~~~~~~~~~VG~fiflR 182 (339)
T cd05131 109 ALLHPEVRAKLESSIQVLRSVTDKVLGSIMSSLD-LIPYGM--RYIAKVLKNSLHEKFPD---ATEDELLKIVGNLLYYR 182 (339)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCHHH--HHHHHHHHHHHHHHCCC---CchHHHHHHHHHHHHHH
Confidence 111 1123456666666666666655 122332 33333222222222221 112223222111 11
Q ss_pred CCCCCCCCcHHHHHHHHHHH-hccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHHHH
Q 017980 142 GYQPHLIAPEQGYRRLIEGS-LSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGR 220 (363)
Q Consensus 142 G~e~~~f~p~~~~~~L~~~q-i~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~ 220 (363)
=..|..++|+ .| .++... -......+...+..+..+++.+.+ ...|+. ++.-...+.+++.+......
T Consensus 183 fi~PAIvsPe-~f-~ii~~~~~~~~~~~~rrnL~~iaKvLq~lan-----~~~F~~----~e~~m~pLN~fi~~~~~~~~ 251 (339)
T cd05131 183 YMNPAIVAPD-GF-DIIDMTAGGQIHSDQRRNLGSVAKVLQHAAS-----NKLFEG----ENDHLSSMNSYLSQTYQKFR 251 (339)
T ss_pred HccchhcCch-hc-CccccccCCCCCHHHHhhHHHHHHHHHHHHC-----CCCCCC----cChHHHhHHHHHHHHHHHHH
Confidence 1248888886 56 333211 122233345555556555555543 123442 12224577788888888888
Q ss_pred HHHHHHHHHhh
Q 017980 221 KTVIRLVDMEA 231 (363)
Q Consensus 221 ~~i~~li~~E~ 231 (363)
..+..+++.+-
T Consensus 252 ~fl~~l~~V~d 262 (339)
T cd05131 252 KFFQAACDVPE 262 (339)
T ss_pred HHHHHHhcCCC
Confidence 88888887543
No 7
>PF04583 Baculo_p74: Baculoviridae p74 conserved region; InterPro: IPR007663 Baculoviruses are distinct from other virus families in that there are two viral phenotypes: budded virus (BV) and occlusion-derived virus (ODV). BVs disseminate viral infection throughout the tissues of the host and ODVs transmit baculovirus between insect hosts. GFP tagging experiments implicate p74 as an ODV envelope protein [, ].; GO: 0019058 viral infectious cycle
Probab=76.12 E-value=3.8 Score=37.01 Aligned_cols=56 Identities=13% Similarity=0.268 Sum_probs=50.8
Q ss_pred HHHhccCCCchhhhcccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHH
Q 017980 9 REYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEM 64 (363)
Q Consensus 9 ~~FF~~~~~w~~l~~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL 64 (363)
.+|+..|+-|.++.-.+|...|-..|..+|...+++-+|.|++.+-..-..+-..|
T Consensus 13 ~~Fled~~~i~~I~~d~Gfd~l~~~lk~mlkkin~~liP~Lk~~ll~~s~~vt~rl 68 (249)
T PF04583_consen 13 SQFLEDHALIMSIATDLGFDVLESALKSMLKKINTKLIPALKRMLLSTSRRVTVRL 68 (249)
T ss_pred HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 47999999999999999999999999999999999999999999888777766655
No 8
>cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis. Mammalian IQGAP1 protein is the best characterized member of the IQGAP family, and contains several protein-interacting domains. Human IQGAP1 is most similar to mouse Iqgap1 (94% identity) and has 62% identity to human IQGAP2. IQGAP1 binds and cross-links actin filaments in vitro and has been implicated in Ca2+/calmodulin signaling, E-cadherin-dependent cell adhesion, cell motility, and invasion. Yeast IQGAP homologues have a role in the recruitment of actin filaments, are components of the spindle pole body, and are required for actomyosin ring assembly and cytokinesis. Furthermore, IQGAP1 over-expression has also been detected in gastric and colorectal carcinomas and gastric cancer cell lines.
Probab=75.55 E-value=19 Score=34.78 Aligned_cols=205 Identities=15% Similarity=0.171 Sum_probs=101.9
Q ss_pred HHHHhccCCCchhhh---cc--cChHHHHHHHHHHHHHHHHccChhH-----HHHHHHHH----HHHHHHHhhcCCCCC-
Q 017980 8 EREYFATSPDYGHLA---GK--MGSEYLAKLLSKHLESVIRSRIPSI-----TSLINKSI----EELESEMDHLGRPIA- 72 (363)
Q Consensus 8 E~~FF~~~~~w~~l~---~r--~G~~~L~~~Ls~lL~~~I~~~LP~l-----~~eI~~~l----~~~~~eL~~Lg~~~~- 72 (363)
...+++.++.|.++- .| .|-.+|+.-|..++.+.|. -|.| =-+|.+.+ ....-+...+|...+
T Consensus 29 ~~dllr~Ns~~~km~~~y~r~~~g~~yLk~vL~p~I~~iie--~~dLdlE~dP~~Iy~~~in~~E~~tG~~S~~~~~v~~ 106 (360)
T cd05133 29 IQEIVTGNPTVIKMVVSFNRGARGQNALRQILAPVVKEIMD--DKSLNIKTDPVDIYKSWVNQMESQTGEASKLPYDVTP 106 (360)
T ss_pred HHHHhccCcHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhc--CcccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCCCH
Confidence 567889999999974 33 7888888888877777553 2333 12233222 111122233433221
Q ss_pred ----CChhHH------HHHHHHHHHHHHHHHHhhccCCCCCccchhhhhhcchhHhcccCCCCcccCHHhHHHHHHh---
Q 017980 73 ----VDAGAQ------LYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSE--- 139 (363)
Q Consensus 73 ----~~~~~~------~~~L~~~~~~f~~~~~~~l~G~~~gg~ri~~~f~~~f~~~l~~~~~~~~~~~~~I~~~i~~--- 139 (363)
.+|+-+ ...|..++++|...+.+.++ ....|-| ++.+..+.....++|. .+.+++-.++-+
T Consensus 107 e~A~~~peV~~~~~~~l~~Lr~i~~~fl~~I~~S~~-~~P~~iR--~ick~i~~~~~~kFP~---~~~~~i~~~vG~fif 180 (360)
T cd05133 107 EQALSHEEVRTRLDASIRNMRTVTDKFLSAIVSSVD-KIPYGMR--FIAKVLKDSLHEKFPD---AGEDELLKIVGNLLY 180 (360)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-hCCHHHH--HHHHHHHHHHHHHCCC---CchhhHHHHHHHHHH
Confidence 122211 12356666666666665554 2233333 2322222211122221 122233222211
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHH
Q 017980 140 ADGYQPHLIAPEQGYRRLIEGSL-SYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDE 218 (363)
Q Consensus 140 ~~G~e~~~f~p~~~~~~L~~~qi-~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~ 218 (363)
.|=..|....|+ .| .++-... ......+...+..+..+++.+.+. ..|+.. +.-...+.+++.+....
T Consensus 181 lRfi~PAIvsPe-~~-~ii~~~~~~~~~~~~rrnL~~iaKvLQ~lan~-----~~f~~~----e~~m~pLN~fI~~~~~~ 249 (360)
T cd05133 181 YRYMNPAIVAPD-AF-DIIDLSAGGQLTTDQRRNLGSIAKMLQHAASN-----KMFLGD----NAHLSIINEYLSQSYQK 249 (360)
T ss_pred HHhccccccCch-hc-CccccccCCCCCHHHHhhHHHHHHHHHHHHcC-----CCCCCC----ccHHHHHHHHHHHHHHH
Confidence 111248888897 55 3333221 234445666666666555555432 234321 11234677888888888
Q ss_pred HHHHHHHHHHHhh
Q 017980 219 GRKTVIRLVDMEA 231 (363)
Q Consensus 219 ~~~~i~~li~~E~ 231 (363)
..+.+..+++.+.
T Consensus 250 ~~~fl~~~~~V~d 262 (360)
T cd05133 250 FRRFFQSACEVPE 262 (360)
T ss_pred HHHHHHHhCCCCC
Confidence 8888887765543
No 9
>cd05127 RasGAP_IQGAP_related This family represents IQ motif containing GTPase activating protein (IQGAP) which associated with the Ras GTP-binding protein. A primary function of IQGAP proteins is to modulate cytoskeletal architecture. There are three known IQGAP family members: IQGAP1, IQGAP2 and IQGAP3. Human IQGAP1 and IQGAP2 share 62% indentity. IQGAPs are multi-domain molecules having a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeats, a single WW domain, four IQ motifs that mediate interactions with calmodulin, and a RasGAP related domain that binds active Rho family GTPases. IQGAP is an essential regulator of cytoskeletal function. IQGAP1 negatively regulates Ras family GTPases by stimulating their intrinsic GTPase activity, the protein actually lacks GAP activity. Both IQGAP1 and IQGAP2 specifically bind to Cdc42 and Rac1, but not to RhoA. Despite of their similarities to part of the sequence of RasGAP, neither IQGAP1 nor IQGAP2 interacts with Ras. IQGA
Probab=73.68 E-value=32 Score=32.72 Aligned_cols=197 Identities=19% Similarity=0.237 Sum_probs=96.9
Q ss_pred HhccCCCchhhh----cc-cChHHHHHHHHHHHHHHHHcc---ChhHHHHHHHHHHHHHHHHhhcCCCC--CCC------
Q 017980 11 YFATSPDYGHLA----GK-MGSEYLAKLLSKHLESVIRSR---IPSITSLINKSIEELESEMDHLGRPI--AVD------ 74 (363)
Q Consensus 11 FF~~~~~w~~l~----~r-~G~~~L~~~Ls~lL~~~I~~~---LP~l~~eI~~~l~~~~~eL~~Lg~~~--~~~------ 74 (363)
+|+..+.|..+- .+ .|..+|+..|..++.+-|... |-.==.+|...+-.. |++.=|++. .+.
T Consensus 31 l~r~Ns~~~kll~~y~r~~~g~~yL~~~L~p~i~~ii~~~~l~lE~DP~~iy~~~i~~--e~~~g~~s~~~~~~~~e~a~ 108 (325)
T cd05127 31 LLRGNTVWIKMLANYNRRARGQKYLKSLLGPVVKEIIEDPDLDLESDPVKIYKSLINQ--EEQTGGESSLPLDVPPEEAI 108 (325)
T ss_pred HHhcCcHHHHHHHHHhCCccchHHHHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHHH--HHHcCCCCCCCCCCCHHHHh
Confidence 788788999874 44 699999999998888866532 211112333333222 333222211 111
Q ss_pred --h------hHHHHHHHHHHHHHHHHHHhhccCCCCCccchhhhhhcchhHhcccCCCCcccCHHhHHHHHHh---ccCC
Q 017980 75 --A------GAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSE---ADGY 143 (363)
Q Consensus 75 --~------~~~~~~L~~~~~~f~~~~~~~l~G~~~gg~ri~~~f~~~f~~~l~~~~~~~~~~~~~I~~~i~~---~~G~ 143 (363)
| ..-..-|+.++++|.+.+.+.++- .+.|- +++++..+...-...|. .+.+++..++-. .|=.
T Consensus 109 ~~p~v~~~~~~nl~~L~~~~~~fl~~I~~s~~~-~P~~l--R~i~~~l~~~~~~kfp~---~~~~~~~~~vg~flflRfi 182 (325)
T cd05127 109 EDPEVRNIFIENLQSLRELTEQFLDAIISSLDK-IPYGI--RYICKQIYEALQRKFPE---ATEDEILKVIGNFLYYRFI 182 (325)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHH--HHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHH
Confidence 1 112234777777777777666652 22332 23332222111111111 111222222111 0111
Q ss_pred CCCCCCcHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017980 144 QPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTV 223 (363)
Q Consensus 144 e~~~f~p~~~~~~L~~~qi~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~~~i 223 (363)
-|...+|+ .| .++.... .+-+...+..+..+++.+.+. ..|+. ++.-...+.+++.+........+
T Consensus 183 ~PAIvsP~-~~-gl~~~~~---~~~~rrnL~~iaKvLq~lan~-----~~f~~----ke~~m~~LN~fi~~~~~~~~~fl 248 (325)
T cd05127 183 NPAIVSPE-NF-GIVDGSP---TPDQRRNLGEVAKVLQQAASN-----KPFGG----ENGYLSPLNDYISESKPRFRDFL 248 (325)
T ss_pred HHHhCCch-hc-CCcCCCC---CHHHHhhHHHHHHHHHHHHCC-----CCCCC----CChhhhhHHHHHHHHHHHHHHHH
Confidence 26677775 44 3333222 344566666666655555542 12331 22234567788888888888888
Q ss_pred HHHHHH
Q 017980 224 IRLVDM 229 (363)
Q Consensus 224 ~~li~~ 229 (363)
..+++.
T Consensus 249 ~~l~~v 254 (325)
T cd05127 249 KELIDV 254 (325)
T ss_pred HHHcCC
Confidence 877654
No 10
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=69.92 E-value=36 Score=29.08 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=50.5
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHHHH---HHHHhc---hhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017980 156 RLIEGSLSYFRGPAEASADAVHFVLKEL---VRKSIG---ETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDM 229 (363)
Q Consensus 156 ~L~~~qi~~w~~pa~~~v~~V~~~~~~~---v~~~~~---~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~~~i~~li~~ 229 (363)
.-++++..+|++.-..|...+... ..+ +..+-+ ....+..||.|++++.......++.......+.++.+-+.
T Consensus 8 ~~~~~~~~~W~~~~~~~~~~l~sl-~nL~eqL~al~~~~~~~~pL~~fpdl~~rL~~Kq~~ale~vl~~L~e~l~~l~~v 86 (168)
T PF15011_consen 8 RKVEEQMEKWDSALSRCLPLLSSL-ANLAEQLQALQNVKNYGTPLRSFPDLQERLRRKQLEALETVLAKLRETLEELQKV 86 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999998888775422 222 222221 1224889999999998888888887777777777765544
No 11
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=65.35 E-value=5.1 Score=23.84 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=21.3
Q ss_pred hhhhCCCHHHHHHHHHHHHHHHHHHHH
Q 017980 326 GQLLDEDPAMMERRLQCAKRLELYKAA 352 (363)
Q Consensus 326 ~~ll~Ed~~~~~~R~~L~~~~~~L~~A 352 (363)
..|.+|.+....+|++|+.+++.|+..
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrnS 30 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRNS 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567888889999999999999988764
No 12
>PRK09343 prefoldin subunit beta; Provisional
Probab=63.46 E-value=28 Score=28.01 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=48.1
Q ss_pred HHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 017980 42 IRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGD 105 (363)
Q Consensus 42 I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~~L~~~~~~f~~~~~~~l~G~~~gg~ 105 (363)
|+...++++.++.+++..++.++..|- .+..+|-..+.+-++.++.++.+.|.||+
T Consensus 65 v~qd~~e~~~~l~~r~E~ie~~ik~le--------kq~~~l~~~l~e~q~~l~~ll~~~~~~~~ 120 (121)
T PRK09343 65 VKVDKTKVEKELKERKELLELRSRTLE--------KQEKKLREKLKELQAKINEMLSKYYPQGG 120 (121)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 667889999999999999999998883 55668999999999999999998887664
No 13
>cd05132 RasGAP_GAPA GAPA is an IQGAP-related protein and is predicted to bind to small GTPases, which are yet to be identified. IQGAP proteins are integral components of cytoskeletal regulation. Results from truncated GAPAs indicated that almost the entire region of GAPA homologous to IQGAP is required for cytokinesis in Dictyostelium. More members of the IQGAP family are emerging, and evidence suggests that there are both similarities and differences in their function.
Probab=58.44 E-value=1.7e+02 Score=27.86 Aligned_cols=199 Identities=15% Similarity=0.259 Sum_probs=96.5
Q ss_pred HHHHhccCCCchhhh---cc--cChHHHHHHHHHHHHHHHHccChhHH-----HHHHHHHHHHHHHHhhcCCCCC----C
Q 017980 8 EREYFATSPDYGHLA---GK--MGSEYLAKLLSKHLESVIRSRIPSIT-----SLINKSIEELESEMDHLGRPIA----V 73 (363)
Q Consensus 8 E~~FF~~~~~w~~l~---~r--~G~~~L~~~Ls~lL~~~I~~~LP~l~-----~eI~~~l~~~~~eL~~Lg~~~~----~ 73 (363)
...+|+.++.|+.+- .+ .|-.+|+..|+.++.+.|.. |.+- .+|.+.+-. +.|++. |.+.. -
T Consensus 28 ~~~l~R~Ns~~~k~l~~y~r~~~g~~yL~~~L~p~i~~ii~~--~~l~lE~DP~kiy~~~i~-~~e~~~-g~~s~~~~~~ 103 (331)
T cd05132 28 VGSLLRANTVVPRMITTYTRRGPGQSYLKSVLAPCLNDVVIH--KDLNLELNPLKVYENMIN-EQEIAT-GEKSNLPRGV 103 (331)
T ss_pred HHHHhcCCchHHHHHHHHHcCcccHHHHHHHHHHHHHHHHcC--CCCCeeCCHHHHHHHHHH-hHHhhc-CCCCcCCCCC
Confidence 467999889999874 33 69999999999888875543 2221 123222221 223433 32111 0
Q ss_pred Chh-H------------HHHHHHHHHHHHHHHHHhhccCCCCCccchhhhhhcchhHhcccCCCCcccCHHhHHHHHHh-
Q 017980 74 DAG-A------------QLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSE- 139 (363)
Q Consensus 74 ~~~-~------------~~~~L~~~~~~f~~~~~~~l~G~~~gg~ri~~~f~~~f~~~l~~~~~~~~~~~~~I~~~i~~- 139 (363)
+++ + ...-|..++++|.+.+.+.++ ..+.| |+++++..+...-..+| ..+++++..++-.
T Consensus 104 t~e~a~~~~ev~~~~~~~l~~L~~~~~~fl~~I~~s~~-~~P~~--lR~i~~~l~~~~~~kfp---~~~~~~~~~~vg~f 177 (331)
T cd05132 104 SPEKAQENPEVKKIIKPRVTQLIEICNRFLDTIISSLN-RLPYG--IRWICKQIRSLTKRKFP---SATDAEICSLIGYF 177 (331)
T ss_pred CHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCHH--HHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHH
Confidence 111 0 112455566666555544443 12223 33444433222222222 1122333332211
Q ss_pred --ccCCCCCCCCcHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHH
Q 017980 140 --ADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRD 217 (363)
Q Consensus 140 --~~G~e~~~f~p~~~~~~L~~~qi~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~ 217 (363)
.|=.-|...+|+ .| .++. ..-.+-+...+..|..+++.+.+ ...|+. ++.-...+.+++.+...
T Consensus 178 lflRfi~PAIvsP~-~f-gl~~---~~~~~~~rrnL~lIaKvLQ~lan-----~~~f~~----ke~~m~pLn~fi~~~~~ 243 (331)
T cd05132 178 FFLRFINPAIVTPQ-AY-MLVD---GEPSDTARKNLTLIAKMLQNLAN-----KPSFGD----KEKWMVPLNPWIDENKE 243 (331)
T ss_pred HHHHHhhHHhcCch-hc-CCcC---CCCCHHHHHHHHHHHHHHHHHhC-----CCCCCC----CchHHHHHHHHHHHHHH
Confidence 111237777786 55 3432 12233345545455544444443 122331 23334567788888888
Q ss_pred HHHHHHHHHHHHh
Q 017980 218 EGRKTVIRLVDME 230 (363)
Q Consensus 218 ~~~~~i~~li~~E 230 (363)
.....+..+++..
T Consensus 244 ~~~~fl~~l~~v~ 256 (331)
T cd05132 244 KVNNFLEELTEVG 256 (331)
T ss_pred HHHHHHHHHhCCC
Confidence 8888888876543
No 14
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=48.69 E-value=96 Score=29.74 Aligned_cols=201 Identities=13% Similarity=0.126 Sum_probs=103.6
Q ss_pred HHHHhccCCCchhhh----cccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhH----HH
Q 017980 8 EREYFATSPDYGHLA----GKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGA----QL 79 (363)
Q Consensus 8 E~~FF~~~~~w~~l~----~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~----~~ 79 (363)
....|+....|+.+- ...|..||...|..++.+.+...-. =||+-.--.. .+...-|.+++.+..+ ..
T Consensus 72 ~~tLFR~NSlaTK~m~~y~k~~G~~YL~~~L~p~I~~I~~~~~~---~EiDP~ki~~-~~~~~s~~~r~~t~~e~ie~n~ 147 (337)
T cd05395 72 PNTLFRSNSLASKSMESFLKVAGMQYLHRVLGPIINRVFEEKKY---VELDPSKVEL-KDVGCSGLHRQQTESEVIEQSS 147 (337)
T ss_pred HhHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---cCcChHhccc-cccccccccccccHHHHHHHHH
Confidence 456898888898863 6799999999998888876654211 1222110000 0111111122222211 12
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccchhhhhhcchhHhcccCCCCcccCHHhH-HHHHHh---ccCCCCCCCCcHHHHH
Q 017980 80 YTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNV-KKVVSE---ADGYQPHLIAPEQGYR 155 (363)
Q Consensus 80 ~~L~~~~~~f~~~~~~~l~G~~~gg~ri~~~f~~~f~~~l~~~~~~~~~~~~~I-~~~i~~---~~G~e~~~f~p~~~~~ 155 (363)
..|...+++|.+.+-+.++- .+. -|+++|+..+.......|... .+++ ..++-. .|=.-|...+|. .|
T Consensus 148 ~~L~~~~~~~l~~I~~S~~~-~P~--~iR~i~~~l~~~v~~rFp~~~---~~~~~~~~VggFiFLRFicPAIvSP~-~f- 219 (337)
T cd05395 148 QLLQSYLGELLTAILQSASY-CPL--VIRAVFRQLFLRVQERFPDPQ---YRKVKFIAVTSFLCLRFFSPAIMSPK-LF- 219 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CcH--HHHHHHHHHHHHHHHHCCCcc---hhhhHHHHHHHHHHHHHhccccCCch-hc-
Confidence 23455555555444443331 111 255666544443333333221 1111 111111 111238888886 66
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017980 156 RLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDME 230 (363)
Q Consensus 156 ~L~~~qi~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~~~i~~li~~E 230 (363)
.|+.. +-.+.+.+.+-.|..+++.+.+.. .|+ ..-++.-...+.+++.+......+.++.+++.+
T Consensus 220 ~L~~~---~p~~~~rR~LtLIAKvLQnLAN~~-----~f~--~~~KE~~M~plN~FI~~~~~~~~~FL~~i~~v~ 284 (337)
T cd05395 220 HLREK---HADARTSRTLLLLAKAVQTVGNMD-----TLA--CRAKEPWMVPLQPAIQQGITQLKDFITRLVNCE 284 (337)
T ss_pred CccCC---CCCHHHHhHHHHHHHHHHHHhCcC-----ccC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55433 334556666667776666666522 222 122455567788899999999999999888664
No 15
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=41.58 E-value=3.1e+02 Score=25.88 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=66.0
Q ss_pred HHHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCCC-----------Cccc----hhh--hhhcch--hHh
Q 017980 58 EELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRP-----------GGDR----IYG--VFDNQL--PAA 118 (363)
Q Consensus 58 ~~~~~eL~~Lg~~~~~~~~~~~~~L~~~~~~f~~~~~~~l~G~~~-----------gg~r----i~~--~f~~~f--~~~ 118 (363)
...-+++..||=..|. -.+...++.-+..|+..++.++.+... -|.. +.. .+.... ..|
T Consensus 89 ~~Ll~e~~~L~~~~pE--i~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~~l~~~~W 166 (335)
T PF08429_consen 89 EALLEEIESLPFDCPE--IDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLRRRLEQLEW 166 (335)
T ss_pred HHHHHHHhcCCeeCch--HHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHHHHHHHHHH
Confidence 3334455556544432 355667888999999999999976110 1111 000 000000 112
Q ss_pred cccC----CCCcccCHHhHHHHHHhccCCCCCCCCcHHHHHHHHHHHhccccchHHHHHH
Q 017980 119 LRKL----PFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASAD 174 (363)
Q Consensus 119 l~~~----~~~~~~~~~~I~~~i~~~~G~e~~~f~p~~~~~~L~~~qi~~w~~pa~~~v~ 174 (363)
+... .....+|.++|+..+....+..++...+.-+.-.-...+...|+.-|..|++
T Consensus 167 ~~~~~~~~~~~~~~tL~~l~~Ll~~g~~l~~~~~~~~~~~L~~~l~~~~~We~ka~~~L~ 226 (335)
T PF08429_consen 167 LEEAREILSDPDRLTLDELRELLDEGERLGIPSDEKLMAELQELLKQGEEWEEKAKELLS 226 (335)
T ss_pred HHHHHHHhccccCCcHHHHHHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2211 1122478999999999655544545555544444466678999999999998
No 16
>cd05130 RasGAP_Neurofibromin Neurofibromin is the product of the neurofibromatosis type 1 gene (NF1) and shares a region of similarity with catalytic domain of the mammalian p120RasGAP protein and an extended similarity with the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2. Neurofibromin has been shown to function as a GAP (GTPase-activating protein) which inhibits low molecular weight G proteins such as Ras by stimulating their intrinsic GTPase activity. NF1 is a common genetic disorder characterized by various symptoms ranging from predisposition for the development of tumors to learning disability or mental retardation. Loss of neurofibromin activity can be correlated to the increase in Ras-GTP concentration in neurofibromas of NF1 of patients, supporting the notion that unregulated Ras signaling may contribute to their development.
Probab=40.38 E-value=2e+02 Score=27.51 Aligned_cols=190 Identities=15% Similarity=0.175 Sum_probs=95.8
Q ss_pred HHHHhccCCCchhhh----cccChHHHHHHHHHHHHHHHHcc-ChhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHH
Q 017980 8 EREYFATSPDYGHLA----GKMGSEYLAKLLSKHLESVIRSR-IPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTI 82 (363)
Q Consensus 8 E~~FF~~~~~w~~l~----~r~G~~~L~~~Ls~lL~~~I~~~-LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~~L 82 (363)
+..+|+..+.|+.+- ...|..+|+..|+.++.+.|... +-...-||.-. ++++ ..+-..-..-|
T Consensus 69 ~~~lfRgNs~~tKl~~~y~k~~G~~yL~~~L~pvI~~ii~~~~~~~~~~EvDP~---------k~~~--~e~l~~n~~~L 137 (329)
T cd05130 69 MQTLFRGNSLASKIMTFCFKVYGATYLQKLLEPLLREVITSPEWQHFEFEVDPT---------RLEP--TENLEENQRNL 137 (329)
T ss_pred HhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCcChh---------hcCC--hhhHHHHHHHH
Confidence 467899989998873 55799999999999888877532 10000011111 1111 11112223456
Q ss_pred HHHHHHHHHHHHhhccCCCCCccchhhhhhcchhHhcccCCCCcccCHHhHHHHHHhccCCCCCCCCcHHHHHHHHHHHh
Q 017980 83 LELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSL 162 (363)
Q Consensus 83 ~~~~~~f~~~~~~~l~G~~~gg~ri~~~f~~~f~~~l~~~~~~~~~~~~~I~~~i~~~~G~e~~~f~p~~~~~~L~~~qi 162 (363)
..++++|.+.+-+.++ ..+.| ++++++..+.......|........=|...+ =.|=.-|...+|+ .| .++...
T Consensus 138 ~~~~~~fl~~I~~S~~-~~P~~--lR~i~~~l~~~v~~kFP~~~~~~~~~Vg~fi-FLRfi~PAIvsP~-~f-~l~~~~- 210 (329)
T cd05130 138 LQLTEKFFHAIINSSS-EFPPQ--LRSVCHCLYQVVSQRFPNKAQNSIGAVGSAM-FLRFINPAIVSPY-EA-GILDKK- 210 (329)
T ss_pred HHHHHHHHHHHHHhHH-hCCHH--HHHHHHHHHHHHHHHCCCcccchHHHHHHHH-HHHHhhhhhCCcc-cc-CCCCCC-
Confidence 7777777766666554 12223 3344432222211122211100000010000 0011137777886 55 444322
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017980 163 SYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLV 227 (363)
Q Consensus 163 ~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~~~i~~li 227 (363)
-.+-+.+.+-.|..+++.+.+.. .|+ ++.-...+.+++.+......+.+.++.
T Consensus 211 --p~~~~rR~L~lIAKvLQnlAN~~-----~F~-----KE~~M~~lN~fi~~~~~~~~~Fl~~i~ 263 (329)
T cd05130 211 --PPPRIERGLKLMSKILQSIANHV-----LFT-----KEEHMRPFNDFVKSNFDAARRFFLDIA 263 (329)
T ss_pred --CCHHHHhHHHHHHHHHHHHhccC-----ccC-----CcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 23445666667776666666532 233 233445677888888888777777655
No 17
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=38.84 E-value=22 Score=32.87 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhccCCCchhh
Q 017980 2 IVARRKEREYFATSPDYGHL 21 (363)
Q Consensus 2 ~~A~~~E~~FF~~~~~w~~l 21 (363)
++|.++..+||+|||.|..+
T Consensus 51 ~~al~rh~~fFNT~p~~~~~ 70 (264)
T PF03613_consen 51 KEALKRHMEFFNTEPFLGPF 70 (264)
T ss_pred HHHHHHHHHHHCCCChhhhH
Confidence 57899999999999988764
No 18
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=38.63 E-value=87 Score=26.32 Aligned_cols=60 Identities=18% Similarity=0.326 Sum_probs=45.1
Q ss_pred HHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 017980 37 HLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPG 103 (363)
Q Consensus 37 lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~~L~~~~~~f~~~~~~~l~G~~~g 103 (363)
-++.-++...|+|-..+........+++..|+ |.. +.|+-+++......+.+.+.|.-..
T Consensus 44 e~i~~LK~ksP~L~~k~~~l~~~~k~ki~~L~------pea-k~Fv~~li~~~~~l~~~~~~G~~~~ 103 (154)
T PF05823_consen 44 EMIAALKEKSPSLYEKAEKLRDKLKKKIDKLS------PEA-KAFVKELIAKARSLYAQYSAGEKPD 103 (154)
T ss_dssp THHHHHHHH-HHHHHHHHHHHHHHHHTTTT--------HHH-HHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHcCC------HHH-HHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 35677888999999999999999999999995 322 3588999999988888888887543
No 19
>KOG1895 consensus mRNA cleavage and polyadenylation factor II complex, subunit PTA1 [RNA processing and modification]
Probab=37.71 E-value=6e+02 Score=28.08 Aligned_cols=188 Identities=14% Similarity=0.141 Sum_probs=109.0
Q ss_pred cccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCC-ChhHHHHHHHHHHH----HHHHHHHhhc
Q 017980 23 GKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAV-DAGAQLYTILELCR----AFDRIFKEHL 97 (363)
Q Consensus 23 ~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~-~~~~~~~~L~~~~~----~f~~~~~~~l 97 (363)
-.-|.+.|..++-..|.+-+..++ .+...+.+......+.+..|=+-.+. .+.+-...+-.++. .|...++..+
T Consensus 703 ~~~~ae~lv~~~v~~ltde~~ps~-~li~tv~~l~~~r~~dvs~L~pi~~~lerd~V~~~~p~~~~l~~~~~~~~~~~~~ 781 (957)
T KOG1895|consen 703 CPAGAETLVPRLVVTLTDELPPST-DLIQTVKKLYETRLKDVSALLPILPGLERDEVLQLLPQLLKLPPKVVKLAFRRLL 781 (957)
T ss_pred ccccCccchhhheeeccccCCCCh-HHHHHHHHHHHHhhhhHHHHHhhcCCCCHHHHHHhhhHhhhcchHHHHHHHHHHh
Confidence 467899999988888888776443 56667777777777777766543332 22233333333333 5566666667
Q ss_pred cCCCCCccchhhhhh-cchhHhcccCCCCcccCHHhHHHHHHhccCC-C-CCCCCcHHHHHHHHHHHhccccchHHHHHH
Q 017980 98 DGGRPGGDRIYGVFD-NQLPAALRKLPFDRHLSLQNVKKVVSEADGY-Q-PHLIAPEQGYRRLIEGSLSYFRGPAEASAD 174 (363)
Q Consensus 98 ~G~~~gg~ri~~~f~-~~f~~~l~~~~~~~~~~~~~I~~~i~~~~G~-e-~~~f~p~~~~~~L~~~qi~~w~~pa~~~v~ 174 (363)
.|....|.. -++. ..--.+++.+.+..+... +.+++++.-+ + ..+|.+. +|+.-+. |+-+|+++-.-+.
T Consensus 782 ~~~~~~~~l--~~l~p~e~li~~H~i~~~~d~~~---~~~~~a~n~cf~~~~~f~~~-~~~~~l~-~l~~~~nlp~lf~- 853 (957)
T KOG1895|consen 782 TGSSLSGRL--PVLDPSEVLIALHAIDPLKDVRG---KLATDALNLCFESRNLFTQQ-VLAQALN-QLVKWENLPLLFM- 853 (957)
T ss_pred hcccccCCC--CccCcHHHHHHHHhcccccCchH---HHHHHHHHHHHhhhhcccHH-HHHHHHH-HHHhccCCchhhH-
Confidence 765533321 1111 011123333333222222 2333333222 3 3778785 7755554 6667776643222
Q ss_pred HHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017980 175 AVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEAS 232 (363)
Q Consensus 175 ~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~~~i~~li~~E~~ 232 (363)
..++. .+..||++...|.+++..++++..-.-.++.+.+.++-..
T Consensus 854 ------rtv~q-------~~~~fp~l~~fV~e~Lsrlvekkiwk~~~~w~gf~kc~~~ 898 (957)
T KOG1895|consen 854 ------RTVIQ-------ALPKFPKLSLFVLEILSRLVEKKIWKFPKRWEGFPKCTSA 898 (957)
T ss_pred ------HHHHh-------hhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 3567999999999999999999888888888887776443
No 20
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=36.95 E-value=62 Score=20.67 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=26.7
Q ss_pred HHHccChh-HHHHHHHHHHHHHHHHhhcCCCCCC
Q 017980 41 VIRSRIPS-ITSLINKSIEELESEMDHLGRPIAV 73 (363)
Q Consensus 41 ~I~~~LP~-l~~eI~~~l~~~~~eL~~Lg~~~~~ 73 (363)
||-.+||. |...-...|.-.++||.+++...+.
T Consensus 2 ~IleELP~PiqQsAkqmlnILQEELssy~~E~~~ 35 (44)
T PF13080_consen 2 HILEELPTPIQQSAKQMLNILQEELSSYPQEQPQ 35 (44)
T ss_pred chHhhcCchHHHHHHHHHHHHHHHHHhchhhccC
Confidence 56678885 6777888999999999999876654
No 21
>PF02477 Nairo_nucleo: Nucleocapsid N protein; InterPro: IPR003486 The nucleoprotein of the ssRNA negative-strand Nairovirus is an internal part of the virus particle.; GO: 0019013 viral nucleocapsid; PDB: 3U3I_A.
Probab=35.98 E-value=32 Score=32.69 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=45.9
Q ss_pred CCchhhh--cccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHH
Q 017980 16 PDYGHLA--GKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIF 93 (363)
Q Consensus 16 ~~w~~l~--~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~~L~~~~~~f~~~~ 93 (363)
|||.+|- .+-|++-++..+.++- .-.=|...++|++.|.+...=+..=.+...+ .+...|++-++ ..+
T Consensus 216 ppwgdink~gksgi~l~at~m~k~~----eldg~~~~ed~k~~l~~l~~w~~~~kd~~e~---~k~~elv~~~~---k~l 285 (442)
T PF02477_consen 216 PPWGDINKAGKSGIPLAATGMAKLA----ELDGKKVLEDIKKTLLDLKKWVEDNKDEVED---GKGDELVKTLT---KHL 285 (442)
T ss_dssp -SSSSTT-BSSSSBHHHHHHHHHTT----T----THHHHHHHHHHHHHHHHHHTGGGS-H---HHHHHHHHHHH---HHH
T ss_pred CCccccccccccCchHHHHHHHHHH----HhcCcchHHHHHHHHHHHHHHHHhchHhhhc---ccHHHHHHHHH---HHH
Confidence 8999996 8999999998877653 1222344445555555544444444433332 22223333332 222
Q ss_pred Hhhc--cCCC----CCccchhhhhhcchhHh
Q 017980 94 KEHL--DGGR----PGGDRIYGVFDNQLPAA 118 (363)
Q Consensus 94 ~~~l--~G~~----~gg~ri~~~f~~~f~~~ 118 (363)
..++ .|.. ..|+.|..+|+..|--+
T Consensus 286 ~~a~~L~k~s~a~raQGaqID~~FSsYyW~~ 316 (442)
T PF02477_consen 286 AKATELSKKSTAFRAQGAQIDTVFSSYYWLW 316 (442)
T ss_dssp HHHHHHHHHHHHHHHHHT---HHHHHHHHHH
T ss_pred HHHHHHhcCchHHHhccCccccchHHHHHHH
Confidence 2322 2222 45778888888666533
No 22
>cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known.
Probab=34.89 E-value=1.5e+02 Score=28.11 Aligned_cols=183 Identities=14% Similarity=0.137 Sum_probs=96.1
Q ss_pred HHHHHhccCCCchhhh----cccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHH
Q 017980 7 KEREYFATSPDYGHLA----GKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTI 82 (363)
Q Consensus 7 ~E~~FF~~~~~w~~l~----~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~~L 82 (363)
++...|+..+.|+.+- ...|..+|+..|+.++.+.|.... .++-.=.+++ .++-+.. ..-|
T Consensus 65 ~~~~lfRgNsl~tK~~~~y~k~~G~~YL~~~L~p~I~~ii~~~~------------~~EiDP~k~~--~~~l~~n-~~~L 129 (309)
T cd05136 65 NERLIFRENTLATKAIEEYLKLVGQDYLQDTLGEFIRALYESEE------------NCEVDPSKCS--ASELPDH-QANL 129 (309)
T ss_pred cHHHHHhcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC------------CcccCccccC--chhHHHH-HHHH
Confidence 4677899888998863 668999999999999888876542 1111111122 1111222 2356
Q ss_pred HHHHHHHHHHHHhhccCCCCCccchhhhhhcchhHhcccCCCCcccCHHhHH-HHHHh---ccCCCCCCCCcHHHHHHHH
Q 017980 83 LELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVK-KVVSE---ADGYQPHLIAPEQGYRRLI 158 (363)
Q Consensus 83 ~~~~~~f~~~~~~~l~G~~~gg~ri~~~f~~~f~~~l~~~~~~~~~~~~~I~-~~i~~---~~G~e~~~f~p~~~~~~L~ 158 (363)
..+++.|.+.+-+.++ ..+.|-| .+|+ .+.+.+.... .+++. .++-. .|=.-|...+|. .| .|+
T Consensus 130 ~~~~~~~~~~I~~S~~-~~P~~lR--~i~~-~lr~~~~~~~------~~~~~~~~Vg~fiFLRFi~PAIvsP~-~f-~l~ 197 (309)
T cd05136 130 RMCCELAWCKIINSHC-VFPAELR--EVFA-SWRERCEDRG------REDIADRLISASLFLRFLCPAILSPS-LF-NLT 197 (309)
T ss_pred HHHHHHHHHHHHHhHH-hCCHHHH--HHHH-HHHHHHhhhc------cchHHHHHHHHHHHHHHhccccCCch-hc-CCC
Confidence 6666666665555544 2233333 3332 1111111110 01111 11111 111238888886 55 454
Q ss_pred HHHhccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017980 159 EGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVD 228 (363)
Q Consensus 159 ~~qi~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~~~i~~li~ 228 (363)
... -.+.+.+.+-.|..+++.+.+.. .|+ . ++.-...+.+++.+........+..+.+
T Consensus 198 ~~~---p~~~~rR~LtlIAKvLQnlAN~~-----~f~---~-KE~~M~~ln~fi~~~~~~~~~fL~~is~ 255 (309)
T cd05136 198 QEY---PSPRTARTLTLIAKVIQNLANFT-----KFG---G-KEEYMEFMNDFLEREWGRMKDFLLEISN 255 (309)
T ss_pred CCC---CChHHhhhHHHHHHHHHHHHCCC-----CCC---C-cchHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 322 23445666666666666655421 232 2 3334456778888888888777777653
No 23
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=34.21 E-value=28 Score=32.47 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhccCCCchhh
Q 017980 2 IVARRKEREYFATSPDYGHL 21 (363)
Q Consensus 2 ~~A~~~E~~FF~~~~~w~~l 21 (363)
++|.++..+||++||.|..+
T Consensus 62 ~~Al~Rhl~fFNT~p~~~~~ 81 (282)
T PRK11103 62 KQAIKRHLEFFNTHPYVAAP 81 (282)
T ss_pred HHHHHHHHHHHCCCchhhhH
Confidence 57899999999999988754
No 24
>PF02179 BAG: BAG domain; InterPro: IPR003103 BAG domains are present in Bcl-2-associated athanogene 1 and silencer of death domains. The BAG proteins are modulators of chaperone activity, they bind to HSP70/HSC70 proteins and promote substrate release. The proteins have anti-apoptotic activity and increase the anti-cell death function of BCL-2 induced by various stimuli. BAG-1 binds to the serine/threonine kinase Raf-1 or Hsc70/Hsp70 in a mutually exclusive interaction. BAG-1 promotes cell growth by binding to and stimulating Raf-1 activity. The binding of Hsp70 to BAG-1 diminishes Raf-1 signalling and inhibits subsequent events, such as DNA synthesis, as well as arrests the cell cycle. BAG-1 has been suggested to function as a molecular switch that encourages cells to proliferate in normal conditions but become quiescent under a stressful environment []. BAG-family proteins contain a single BAG domain, except for human BAG-5 which has four BAG repeats. The BAG domain is a conserved region located at the C terminus of the BAG-family proteins that binds the ATPase domain of Hsc70/Hsp70. The BAG domain is evolutionarily conserved, and BAG domain containing proteins have been described and/or proven in a variety of organisms including Mus musculus (Mouse), Xenopus spp., Drosophila spp., Bombyx mori (Silk moth), Caenorhabditis elegans, Saccharomyces cerevisiae (Baker's yeast), Schizosaccharomyces pombe (Fission yeast), and Arabidopsis thaliana (Mouse-ear cress). The BAG domain has 110-124 amino acids and is comprised of three anti-parallel alpha-helices, each approximately 30-40 amino acids in length. The first and second helices interact with the serine/threonine kinase Raf-1 and the second and third helices are the sites of the BAG domain interaction with the ATPase domain of Hsc70/Hsp70. Binding of the BAG domain to the ATPase domain is mediated by both electrostatic and hydrophobic interactions in BAG-1 and is energy requiring.; GO: 0051087 chaperone binding; PDB: 1M7K_A 1M62_A 1T7S_A 1UGO_A 1I6Z_A 3A8Y_C 1UK5_A 3FZM_B 3FZL_B 3M3Z_B ....
Probab=33.75 E-value=1.8e+02 Score=20.95 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=26.6
Q ss_pred hHhhh-hCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 017980 324 QLGQL-LDEDPAMMERRLQCAKRLELYKAARDEI 356 (363)
Q Consensus 324 ~~~~l-l~Ed~~~~~~R~~L~~~~~~L~~A~~~L 356 (363)
.++.+ ..-+|.+...|+.+.++++.+-+.++.+
T Consensus 42 kLD~I~~~g~~~iR~~RK~~v~~iq~~l~~lD~~ 75 (76)
T PF02179_consen 42 KLDSIETEGNPEIREKRKQAVKRIQQLLDKLDSL 75 (76)
T ss_dssp HHHTCECSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 46667 7778999999999999999887766543
No 25
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=33.51 E-value=4.2e+02 Score=25.37 Aligned_cols=201 Identities=11% Similarity=0.111 Sum_probs=98.9
Q ss_pred HHHHHhccCCCchhhh----cccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcC--CCCCCChhHHHH
Q 017980 7 KEREYFATSPDYGHLA----GKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLG--RPIAVDAGAQLY 80 (363)
Q Consensus 7 ~E~~FF~~~~~w~~l~----~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg--~~~~~~~~~~~~ 80 (363)
.....|+.+..|+.+- .+.|..+|+..|+.++.+.|..... =||+-.--... +....+ ...+ ++ +.+.
T Consensus 72 ~~~tlfR~NSlaTK~m~~y~k~~G~~YL~~~L~p~I~~Ii~~~~~---~EiDP~ki~~~-~~~~i~~~~a~~-~~-e~~e 145 (333)
T cd05135 72 DPNTLFRSNSLASKSMEQFMKVVGMPHLHEPLLPEISKPFEEKKY---IELDPCKIDLN-RRRRISFKGAVS-EE-EVRE 145 (333)
T ss_pred CHhHHhhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcc---cccCHHHcccc-cccccccccccC-cH-HHHH
Confidence 3566899888998863 5699999999999888887664321 12221000000 000000 0111 11 1122
Q ss_pred ----HHHHHHHHHHHHHHhhccCCCCCccchhhhhhcchhHhcccCCCCcccCHHhHH-HHHHh---ccCCCCCCCCcHH
Q 017980 81 ----TILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVK-KVVSE---ADGYQPHLIAPEQ 152 (363)
Q Consensus 81 ----~L~~~~~~f~~~~~~~l~G~~~gg~ri~~~f~~~f~~~l~~~~~~~~~~~~~I~-~~i~~---~~G~e~~~f~p~~ 152 (363)
.|...+.+|.+.+-+.++ ..+.| ++++|+..+.......|... ..++. .++-. .|=.-|...+|.
T Consensus 146 ~~i~~L~~~~~~~~~~I~~S~~-~~P~~--lR~i~~~l~~~v~~kFp~~~---~~~~~~~~Vg~fiFLRFi~PAIvsP~- 218 (333)
T cd05135 146 SSLEMLQGYLSSITDAIVGSVS-QCPPV--MRLTFKQLHKRVEERFPEAE---NQDVKYLAISGFLFLRFFAPAILTPK- 218 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhhHH-hCCHH--HHHHHHHHHHHHHHHCCCCc---cchhhHHHHHHHHHHHHhccccCCcc-
Confidence 233334444443322222 11222 44555433322222222111 11221 11111 011138888886
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017980 153 GYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEA 231 (363)
Q Consensus 153 ~~~~L~~~qi~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~~~i~~li~~E~ 231 (363)
.| .|+..+ -.+.+...+-.|..+++.+.+.. ..|+ .-++.-...+.+++.+........+..+++.+.
T Consensus 219 ~f-~l~~~~---~~~~~rR~L~lIAKvLQnlAN~~----~~f~---~~KE~~M~pln~Fi~~~~~~v~~FL~~l~~V~~ 286 (333)
T cd05135 219 LF-QLREQH---ADPRTSRTLLLLAKAVQSIGNLG----QQLG---QGKEQWMAPLHPFIRQSVARVRDFLDRLIDIDH 286 (333)
T ss_pred cc-CccCCC---CCHHHHHHHHHHHHHHHHHHccC----CcCC---CCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 56 555433 33556666666766666665421 1222 113333567778999999999999999987653
No 26
>COG2361 Uncharacterized conserved protein [Function unknown]
Probab=33.50 E-value=62 Score=25.86 Aligned_cols=39 Identities=23% Similarity=0.489 Sum_probs=30.8
Q ss_pred Cchhhh--------cccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHH
Q 017980 17 DYGHLA--------GKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELE 61 (363)
Q Consensus 17 ~w~~l~--------~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~ 61 (363)
||+.+. +++|+.. ++..+-|+..||.|+.+|...+.+.+
T Consensus 68 PW~~magmRd~liH~Yfgvd~------~~VW~~v~~~lP~L~~~i~~il~~~~ 114 (117)
T COG2361 68 PWKEMAGMRDKLIHGYFGVDL------KIVWDTVKTDLPALKKEILEILDELE 114 (117)
T ss_pred CHHHHHHHHHHHHhhccCCCH------HHHHHHHHhhhHhhHHHHHHHHHHhh
Confidence 798764 5666654 46778899999999999999888764
No 27
>PRK09855 PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional
Probab=33.43 E-value=29 Score=31.97 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhccCCCchhh
Q 017980 2 IVARRKEREYFATSPDYGHL 21 (363)
Q Consensus 2 ~~A~~~E~~FF~~~~~w~~l 21 (363)
++|.++..+||++||.|..+
T Consensus 54 ~~Al~rHl~ffNT~p~~~~~ 73 (263)
T PRK09855 54 SAAMKDNLEFINTHPNLVGF 73 (263)
T ss_pred HHHHHHHHHHHCCCchhhhH
Confidence 57899999999999988764
No 28
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=32.45 E-value=3.1e+02 Score=26.98 Aligned_cols=188 Identities=15% Similarity=0.208 Sum_probs=97.7
Q ss_pred HHHHhccCCCchhhh----cccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCC--CC--CChhHHH
Q 017980 8 EREYFATSPDYGHLA----GKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRP--IA--VDAGAQL 79 (363)
Q Consensus 8 E~~FF~~~~~w~~l~----~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~--~~--~~~~~~~ 79 (363)
+...|+....|+.+- .+.|..+|.+.|+.++.+.+..... =||+- .++.+. +. ..-..-.
T Consensus 131 ~ntLFRgNSl~TK~l~~y~r~~G~~YL~~~L~p~I~~I~~~~~~---~EiDP---------~ki~~~~~~e~~~~l~~n~ 198 (395)
T cd05137 131 ANLLFRGNSLLTKSLELYMRRLGKEYLEKTLGAKIREINEEDPS---CEVDP---------SRISEGDEIEKRQIIEHNW 198 (395)
T ss_pred cccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---eeeCh---------hhcCCcccchHHHHHHHHH
Confidence 345788888888753 6789999999999988887753321 11111 011100 00 0112222
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccchhhhhhcchhHhcccCCCCcccCHHhHHHHHHhccC------CCCCCCCcHHH
Q 017980 80 YTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADG------YQPHLIAPEQG 153 (363)
Q Consensus 80 ~~L~~~~~~f~~~~~~~l~G~~~gg~ri~~~f~~~f~~~l~~~~~~~~~~~~~I~~~i~~~~G------~e~~~f~p~~~ 153 (363)
.-|...+++|.+.+-+.++ ..+.+ ++++|+... +.+...-++.. .++ .+..-.| .-|...+|. .
T Consensus 199 ~~L~~~~~~~~~~I~~S~~-~~P~~--lR~i~~~lr-~~v~~kfpd~~---~~~--~~~~Vg~FiFLRFicPAIvsP~-~ 268 (395)
T cd05137 199 ERLISLTEEIWKRIANTSN-DLPQE--IRHILKYIR-AKLEDRYGDFL---RTV--VYNSISGFLFLRFFCPAILNPK-L 268 (395)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCHH--HHHHHHHHH-HHHHHHCCCch---hhH--HHHHHHHHHHHHHhccccCChh-h
Confidence 3466666666655554443 11222 344444222 22221111100 111 1111122 138888896 5
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017980 154 YRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDME 230 (363)
Q Consensus 154 ~~~L~~~qi~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~~~i~~li~~E 230 (363)
| .|+.. +-.+-+.+.+-.|..+++.+.+.. .|+ . ++.-...+.+++.++.....+.+..+....
T Consensus 269 f-~L~~~---~p~~~~rRtLtLIAKvLQnLAN~~-----~f~---~-KE~~M~~lN~Fi~~~~~~~~~FL~~is~v~ 332 (395)
T cd05137 269 F-GLLRD---HPQPRAQRTLTLIAKVLQNLANLT-----NFG---K-KEPWMEPMNPFIEKHRQELKDYIDKICSIK 332 (395)
T ss_pred c-CCCcC---CCCHHHHHHHHHHHHHHHHHhccC-----CCC---C-cchHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5 55542 334556666767766666665421 232 2 444456678888888888888888776443
No 29
>cd05391 RasGAP_p120GAP p120GAP is a negative regulator of Ras that stimulates hydrolysis of bound GTP to GDP. Once the Ras regulator p120GAP, a member of the GAP protein family, is recruited to the membrane, it is transiently immobilized to interact with Ras-GTP. The down regulation of Ras by p120GAP is a critical step in the regulation of many cellular processes, which is disrupted in approximately 30% of human cancers. p120GAP contains SH2, SH3, PH, calcium- and lipid-binding domains, suggesting its involvement in a complex network of cellular interactions in vivo.
Probab=31.22 E-value=4.2e+02 Score=25.15 Aligned_cols=184 Identities=12% Similarity=0.140 Sum_probs=98.2
Q ss_pred HHHHhccCCCchhhh----cccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHH
Q 017980 8 EREYFATSPDYGHLA----GKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTIL 83 (363)
Q Consensus 8 E~~FF~~~~~w~~l~----~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~~L~ 83 (363)
....|+....|+.+- .+.|..+|...|+.++.+.+...- .++-.=.+++++ .+...-..-|.
T Consensus 64 ~~tLFR~NSlaTK~~~~y~k~~G~~YL~~~L~pvI~~i~~~~~------------~~EiDP~ki~~~--e~~~~n~~~L~ 129 (315)
T cd05391 64 ATTLFRATTLASTLMEQYMKATATKFVHHALKDSILKIMESKQ------------SCELNPSKLEKN--EDVNTNLEHLL 129 (315)
T ss_pred hhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------ccccChhhcCCc--hhHHHHHHHHH
Confidence 456888888888763 679999999999988888664321 111111122221 11112223466
Q ss_pred HHHHHHHHHHHhhccCCCCCccchhhhhhcchhHhcccCCCCcccCHHhHHHHHHhccC------CCCCCCCcHHHHHHH
Q 017980 84 ELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADG------YQPHLIAPEQGYRRL 157 (363)
Q Consensus 84 ~~~~~f~~~~~~~l~G~~~gg~ri~~~f~~~f~~~l~~~~~~~~~~~~~I~~~i~~~~G------~e~~~f~p~~~~~~L 157 (363)
..+++|.+.+-..++ ..+.+ ++++++..........|... ++. ...-.| .-|...+|. .| .|
T Consensus 130 ~~~~~~~~~I~~S~~-~~P~~--lr~i~~~l~~~v~~kfp~~~-----~~~--~~~Vg~FiFLRFicPAIvsP~-~f-~L 197 (315)
T cd05391 130 NILSELVEKIFMAAE-ILPPT--LRYIYGCLQKSVQAKWPTNT-----TMR--TRVVSGFVFLRLICPAILNPR-MF-NI 197 (315)
T ss_pred HHHHHHHHHHHHhHH-hCCHH--HHHHHHHHHHHHHHHCCCch-----hhH--HHHHHHHHHHHHhccccCChh-hc-CC
Confidence 777777766655554 12222 34444422221111222111 110 111222 138888896 56 55
Q ss_pred HHHHhccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017980 158 IEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDM 229 (363)
Q Consensus 158 ~~~qi~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~~~i~~li~~ 229 (363)
+... -.+.+.+.+-.|..+++.+.+.. .|+ .++.....+.+++.+......+.+..+.+.
T Consensus 198 ~~~~---p~~~~rR~L~lIaKvLQnLAN~~-----~f~----~KE~~M~~ln~Fi~~~~~~~~~FL~~is~v 257 (315)
T cd05391 198 ISDA---PSPVACRTLMMVAKSVQNLANLV-----EFG----AKEPYMEGVNPFIKSNKHRMIMFLDELGNV 257 (315)
T ss_pred ccCC---CCHHHHHHHHHHHHHHHHHhCcC-----cCC----CcchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5433 23445566666666666665421 232 244456677889999888888888877543
No 30
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=30.33 E-value=35 Score=31.60 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhccCCCchhh
Q 017980 2 IVARRKEREYFATSPDYGHL 21 (363)
Q Consensus 2 ~~A~~~E~~FF~~~~~w~~l 21 (363)
++|.++..+||+|||.|..+
T Consensus 52 ~~Alkrhl~fFNT~p~~~~~ 71 (271)
T TIGR00828 52 SAALKRHLEFFNTHPNLVGP 71 (271)
T ss_pred HHHHHHHHHHHCCCchhhhH
Confidence 57899999999999988754
No 31
>PF15296 Codanin-1_C: Codanin-1 C-terminus
Probab=29.46 E-value=1.3e+02 Score=24.32 Aligned_cols=51 Identities=12% Similarity=0.241 Sum_probs=31.2
Q ss_pred HHHHHHHhccCCCchhhhcccChHHHHHHHHHHHHHHHHc-cChhHHHHHHHHHHH
Q 017980 5 RRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRS-RIPSITSLINKSIEE 59 (363)
Q Consensus 5 ~~~E~~FF~~~~~w~~l~~r~G~~~L~~~Ls~lL~~~I~~-~LP~l~~eI~~~l~~ 59 (363)
++-|+.||.++|+- -|.-+..-.+|...--+.||+. -||..++.+.+++++
T Consensus 69 ~qLeeaFfh~Qp~S----lRRtVeFV~ERv~sn~VK~i~~~ll~~~~~~a~~~l~~ 120 (121)
T PF15296_consen 69 LQLEEAFFHSQPAS----LRRTVEFVSERVASNCVKHIKQTLLLPAVKAADAQLQE 120 (121)
T ss_pred HHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 46799999988743 2344455555555555555554 356666666666543
No 32
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=26.43 E-value=7.5e+02 Score=25.69 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHhccCCCchh--h-hcccChHHHHHHHHHHHHHHHHccC
Q 017980 1 MIVARRKEREYFATSPDYGH--L-AGKMGSEYLAKLLSKHLESVIRSRI 46 (363)
Q Consensus 1 ~~~A~~~E~~FF~~~~~w~~--l-~~r~G~~~L~~~Ls~lL~~~I~~~L 46 (363)
|.+-|+-|++||++....++ | |+.+.+.+|.-..|.-.-..++.+.
T Consensus 532 IdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResi 580 (980)
T KOG0447|consen 532 IEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESV 580 (980)
T ss_pred HHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHH
Confidence 56678999999998766654 3 4899999999999988877776543
No 33
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=26.39 E-value=1.5e+02 Score=21.36 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHHHh
Q 017980 49 ITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKE 95 (363)
Q Consensus 49 l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~~L~~~~~~f~~~~~~ 95 (363)
...+|+..|.++++-|.+|.-...+.|...+.-+...+..|...+..
T Consensus 26 ~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~ 72 (79)
T PF05008_consen 26 LIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKK 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666665332233445566777777777776654
No 34
>PF13864 Enkurin: Calmodulin-binding
Probab=25.24 E-value=3.1e+02 Score=20.87 Aligned_cols=34 Identities=9% Similarity=0.019 Sum_probs=29.7
Q ss_pred HhhhhCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017980 325 LGQLLDEDPAMMERRLQCAKRLELYKAARDEIDS 358 (363)
Q Consensus 325 ~~~ll~Ed~~~~~~R~~L~~~~~~L~~A~~~L~~ 358 (363)
.-.+..+.+....++..|.+++.-|+++..++.+
T Consensus 62 ~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~lsr 95 (98)
T PF13864_consen 62 KLPFSIDTLRKKRRKEELEKELKQLEKDIKKLSR 95 (98)
T ss_pred hCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445688999999999999999999999998875
No 35
>PF10167 NEP: Uncharacterised conserved protein; InterPro: IPR019320 This entry represents the uncharacterised protein family UPF0402. It contains a characteristic NEP sequence motif. Their function is not known.
Probab=22.85 E-value=1.1e+02 Score=24.57 Aligned_cols=27 Identities=26% Similarity=0.645 Sum_probs=18.7
Q ss_pred HHHHHHccChhHHHHHHHHHHHHHHHHh
Q 017980 38 LESVIRSRIPSITSLINKSIEELESEMD 65 (363)
Q Consensus 38 L~~~I~~~LP~l~~eI~~~l~~~~~eL~ 65 (363)
|-+||++++|.|.+ .+..+.+...++.
T Consensus 35 lQeHvrkslP~lv~-~k~~v~~~~~~~~ 61 (118)
T PF10167_consen 35 LQEHVRKSLPKLVE-LKKEVQELSQELQ 61 (118)
T ss_pred HHHHHHHHhHHHHH-HHHHHHHHHHHhc
Confidence 56899999999875 3445555555554
No 36
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=22.68 E-value=2e+02 Score=19.79 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHH
Q 017980 48 SITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDR 91 (363)
Q Consensus 48 ~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~~L~~~~~~f~~ 91 (363)
.+-.+.++.+.-...+|..+|-| ..+|.||+....+|.+
T Consensus 18 kf~~~w~~lf~~~s~~LK~~GIp-----~r~RryiL~~~ek~r~ 56 (57)
T PF09597_consen 18 KFESDWEKLFTTSSKQLKELGIP-----VRQRRYILRWREKYRQ 56 (57)
T ss_pred HHHHHHHHHHhcCHHHHHHCCCC-----HHHHHHHHHHHHHHhC
Confidence 34445677788888899999974 2567899998888853
No 37
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.42 E-value=6.5e+02 Score=23.63 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=27.4
Q ss_pred CCCchhhh--cccChHHHHHHHHHHHHHHHHccChh-------------HHHHHHHHHHHHHHHHhhcC
Q 017980 15 SPDYGHLA--GKMGSEYLAKLLSKHLESVIRSRIPS-------------ITSLINKSIEELESEMDHLG 68 (363)
Q Consensus 15 ~~~w~~l~--~r~G~~~L~~~Ls~lL~~~I~~~LP~-------------l~~eI~~~l~~~~~eL~~Lg 68 (363)
.|.|-+.. -..-...-+++++++=..|-+..+|+ |..+|..++..|++.+..+-
T Consensus 56 pP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~ 124 (305)
T KOG0809|consen 56 PPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLS 124 (305)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677664 12333334444444444444444664 34555666666666555443
No 38
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=20.10 E-value=3.7e+02 Score=22.68 Aligned_cols=48 Identities=13% Similarity=0.275 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHH---------------------HHccChhHHHHHHHHHHHHHHHHhhcCCCCCCCh
Q 017980 28 EYLAKLLSKHLESV---------------------IRSRIPSITSLINKSIEELESEMDHLGRPIAVDA 75 (363)
Q Consensus 28 ~~L~~~Ls~lL~~~---------------------I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~ 75 (363)
..+.+.|+++|.+- +..-|=++..++...+.++.+++..||..|..+.
T Consensus 14 ~~~~~~Ln~~lAd~~~Ly~k~~~~HWnV~G~~F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~~t~ 82 (156)
T COG0783 14 KKIAEALNQLLADLYVLYLKTHNYHWNVKGPNFFALHEKLEELYEELAEHVDEIAERIRALGGVPLGTL 82 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccceeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccH
Confidence 55666677776654 5566778888999999999999999998777544
No 39
>PF00616 RasGAP: GTPase-activator protein for Ras-like GTPase; InterPro: IPR001936 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []. This intrinsic GTPase activity of ras is stimulated by a family of proteins collectively known as 'GAP' or GTPase-activating proteins [, ]. As it is the GTP bound form of ras which is active, these proteins are said to be down-regulators of ras. The Ras GTPase-activating proteins are quite large (from 765 residues for sar1 to 3079 residues for IRA2) but share only a limited (about 250 residues) region of sequence similarity, referred to as the 'catalytic domain' or rasGAP domain. Note: There are distinctly different GAPs for the rap and rho/rac subfamilies of ras-like proteins (reviewed in reference []) that do not share sequence similarity with ras GAPs.; GO: 0005096 GTPase activator activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3BXJ_B 1WQ1_G 1WER_A 1NF1_A 3FAY_A.
Probab=20.08 E-value=3.3e+02 Score=23.23 Aligned_cols=89 Identities=20% Similarity=0.366 Sum_probs=50.7
Q ss_pred HHHhccCCCchhhh----cc-cChHHHHHHHHHHHHHHHHccChhHHH---HHHHHHHHHHH----HHhhcCCCCCCC-h
Q 017980 9 REYFATSPDYGHLA----GK-MGSEYLAKLLSKHLESVIRSRIPSITS---LINKSIEELES----EMDHLGRPIAVD-A 75 (363)
Q Consensus 9 ~~FF~~~~~w~~l~----~r-~G~~~L~~~Ls~lL~~~I~~~LP~l~~---eI~~~l~~~~~----eL~~Lg~~~~~~-~ 75 (363)
..+|++.+.|..+- .+ .|..+|..-|..++...+...+ .+.- .|...+...++ .=..++++.... -
T Consensus 17 ~~lfr~ns~~~k~l~~y~~~~~~~~yL~~~l~~~v~~i~~~~~-~~eidp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (197)
T PF00616_consen 17 NTLFRGNSVATKLLSAYARRPVGKEYLKEILKPIVQEIINSDL-DLEIDPSKIYQSLSSQKEPDISSEKAISDPRVSEIL 95 (197)
T ss_dssp CCTTCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------CCCCHHHHHHHHHHS--HHHHTTSHHCCCCH
T ss_pred hHHHhCCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhCCCC-CeeecHHHHHHHHhhhhhccCCHHHhhcccchhHHH
Confidence 45778888898863 66 7999999999999888873222 2111 12233332222 122233333221 2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcc
Q 017980 76 GAQLYTILELCRAFDRIFKEHLD 98 (363)
Q Consensus 76 ~~~~~~L~~~~~~f~~~~~~~l~ 98 (363)
......|.+++..|.+.+.+.++
T Consensus 96 ~~n~~~L~~~~~~~~~~i~~s~~ 118 (197)
T PF00616_consen 96 EENLQNLRELCESFLDAIISSID 118 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 34445677777777777777665
Done!