Query 017980
Match_columns 363
No_of_seqs 136 out of 880
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 08:00:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3szr_A Interferon-induced GTP- 100.0 9.4E-60 3.2E-64 480.5 29.9 330 2-360 268-607 (608)
2 3zvr_A Dynamin-1; hydrolase, D 100.0 5E-57 1.7E-61 463.6 30.7 356 2-362 269-768 (772)
3 3ljb_A Interferon-induced GTP- 100.0 2.5E-40 8.6E-45 300.6 20.8 255 74-335 2-271 (271)
4 3t34_A Dynamin-related protein 99.3 6.2E-13 2.1E-17 127.1 5.2 76 2-77 255-330 (360)
5 2x2e_A Dynamin-1; nitration, h 99.3 5.2E-12 1.8E-16 120.4 8.0 94 3-96 250-345 (353)
6 1jwy_B Dynamin A GTPase domain 97.9 1.1E-05 3.7E-10 74.8 5.0 66 2-67 250-315 (315)
7 2esy_A LUNG surfactant protein 50.1 4.5 0.00015 22.9 0.5 25 15-39 2-27 (32)
8 3k4t_A Virion-associated prote 43.8 86 0.0029 22.7 6.5 56 40-96 5-60 (95)
9 1txp_A HnRNP C, heterogeneous 36.7 27 0.00092 19.3 2.3 21 41-61 3-23 (28)
10 3at7_A Alginate-binding flagel 35.0 52 0.0018 29.3 5.4 84 8-95 178-267 (283)
11 3kdq_A Uncharacterized conserv 33.9 1.4E+02 0.0048 23.9 7.3 48 48-95 11-63 (154)
12 2w9y_A CE-FAR-7, fatty acid/re 27.3 1.4E+02 0.0049 23.5 6.0 61 38-105 51-111 (140)
13 4akl_A Nucleocapsid; viral pro 24.7 90 0.0031 29.0 5.0 95 16-118 215-315 (482)
14 4ecg_A Putative iron-regulated 24.2 91 0.0031 29.0 5.2 88 8-95 276-374 (381)
15 4b6x_A AVRRPS4, avirulence pro 23.3 2E+02 0.0068 20.3 5.8 40 28-67 35-74 (90)
16 2qyw_A Vesicle transport throu 23.1 2.2E+02 0.0075 20.9 6.2 47 49-95 50-96 (102)
17 3f1i_H Hepatocyte growth facto 22.2 2.3E+02 0.008 20.7 6.6 75 273-360 4-85 (98)
18 1vcs_A Vesicle transport throu 21.9 1.9E+02 0.0064 21.2 5.6 47 49-95 39-85 (102)
19 1bde_A VPR protein; AIDS, HIV, 21.9 64 0.0022 18.9 2.2 20 25-44 7-26 (35)
20 2lhr_A Iron-regulated surface 21.7 1.1E+02 0.0038 20.8 3.7 27 40-66 33-60 (78)
21 3myf_A Sensor protein; HPT, hi 20.7 1.8E+02 0.0062 21.8 5.5 44 23-67 64-116 (119)
No 1
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=9.4e-60 Score=480.54 Aligned_cols=330 Identities=15% Similarity=0.230 Sum_probs=290.6
Q ss_pred HHHHHHHHHHhccCCCchhhh--cccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHH
Q 017980 2 IVARRKEREYFATSPDYGHLA--GKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQL 79 (363)
Q Consensus 2 ~~A~~~E~~FF~~~~~w~~l~--~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~ 79 (363)
.+|++.|.+||++||+|+.+. +++||++|+++|+++|.+||+++||.|+.+|+.++.+++++|++||+++++++.+++
T Consensus 268 ~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~~~~~~~~~~~ 347 (608)
T 3szr_A 268 SEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKM 347 (608)
T ss_dssp HHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCSHHHHH
T ss_pred HHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 578889999999999999886 599999999999999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCC---ccchhhhhhcchhHhcccCCC----CcccCHHhHHHHHHhccCCCCCCCCcHH
Q 017980 80 YTILELCRAFDRIFKEHLDGGRPG---GDRIYGVFDNQLPAALRKLPF----DRHLSLQNVKKVVSEADGYQPHLIAPEQ 152 (363)
Q Consensus 80 ~~L~~~~~~f~~~~~~~l~G~~~g---g~ri~~~f~~~f~~~l~~~~~----~~~~~~~~I~~~i~~~~G~e~~~f~p~~ 152 (363)
.||++++++|++.++++++|.+.. +.++...++..|..+...+.. .......+|++++++++|+++|+|.|+.
T Consensus 348 ~~l~~~~~~f~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~f~~~~ 427 (608)
T 3szr_A 348 FFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAELPGFVNYR 427 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSSCSSCTH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcCCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHccCCCCCCCccHH
Confidence 999999999999999999999843 256666666666655443322 2233467899999999999999999999
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017980 153 GYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEAS 232 (363)
Q Consensus 153 ~~~~L~~~qi~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~~~i~~li~~E~~ 232 (363)
+|+.||++|+++|++||.+|++.|++.+..++..++ .++|.+||+|++++.+++.+++.++.++|.++|..+++||..
T Consensus 428 ~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~--~~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~~li~mE~~ 505 (608)
T 3szr_A 428 TFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVS--IKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQI 505 (608)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHH--HHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999998876 368999999999999999999999999999999999999999
Q ss_pred CCChh-hcccchhhhhhhCCCCCCCCCCCccccCCCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 017980 233 YLTVE-FFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLN 311 (363)
Q Consensus 233 ~i~td-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~aYy~va~krf~D~Vp~~I~~~Lv~~~~~~l~~ 311 (363)
|++.| +|.. +...+.+|+.++.|||+||+|||+|+|||+|+|+||+.+.+.|+.
T Consensus 506 ~~~~d~~~~~-------------------------~~~~~~ei~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~ 560 (608)
T 3szr_A 506 VYGAFQSSSA-------------------------TDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQK 560 (608)
T ss_dssp CCCC----------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cccCCccccC-------------------------CCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 87665 3420 000124699999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHhHhhhhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 017980 312 HFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVS 360 (363)
Q Consensus 312 ~l~~~L~~~~~~~~~~ll~Ed~~~~~~R~~L~~~~~~L~~A~~~L~~~~ 360 (363)
+|++.|+.. +.++.||+|||+++.+|+.|++++++|++|.++|..|.
T Consensus 561 ~l~~~l~~~--~~~~~ll~E~~~~~~~R~~l~~~~~~L~~A~~~l~~~~ 607 (608)
T 3szr_A 561 AMLQLLQDK--DTYSWLLKERSDTSDKRKFLKERLARLTQARRRLAQFP 607 (608)
T ss_dssp HHHTTTTCH--HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcc--hhHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999876 68999999999999999999999999999999999874
No 2
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=5e-57 Score=463.64 Aligned_cols=356 Identities=22% Similarity=0.411 Sum_probs=301.4
Q ss_pred HHHHHHHHHHhccCCCchhhhcccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHH
Q 017980 2 IVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYT 81 (363)
Q Consensus 2 ~~A~~~E~~FF~~~~~w~~l~~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~~ 81 (363)
.+++..|..||.++|+|..+.+++|+..|++.|++.|..||+++||.|+.+|+.++..++.++++||+++++++.++..+
T Consensus 269 ~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~~~~~~~~~~~~~~ 348 (772)
T 3zvr_A 269 TAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKNFRPDDPARKTKA 348 (772)
T ss_dssp HHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSHHH
T ss_pred HHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 46788899999999999888899999999999999999999999999999999999999999999999998888888899
Q ss_pred HHHHHHHHHHHHHhhccCCC--------CCccchhhhhhcchhHhcccCCCCcccCHHhHHHHHHhccCCCCCCCCcHHH
Q 017980 82 ILELCRAFDRIFKEHLDGGR--------PGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQG 153 (363)
Q Consensus 82 L~~~~~~f~~~~~~~l~G~~--------~gg~ri~~~f~~~f~~~l~~~~~~~~~~~~~I~~~i~~~~G~e~~~f~p~~~ 153 (363)
|++++++|++.|.++|+|++ +||+||+++|++.|++.+.++++++.+++++|+++|+|++|++||+|+|+.+
T Consensus 349 ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n~~G~~~~lf~p~~~ 428 (772)
T 3zvr_A 349 LLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDLA 428 (772)
T ss_dssp HHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHHCC------CHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHhCCCCCCCCCChHHH
Confidence 99999999999999999998 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 017980 154 YRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASY 233 (363)
Q Consensus 154 ~~~L~~~qi~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~~~i~~li~~E~~~ 233 (363)
|+.||++||++|++||++|++.|+.++..++++|. .+|.+||.|++++.+++.++|+++..+|+++|..|+++|.+|
T Consensus 429 fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~---~~l~RfP~Lr~ei~~iv~~~Lre~~~~t~~~V~~LId~E~ay 505 (772)
T 3zvr_A 429 FEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS---EKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAY 505 (772)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHG---GGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999986 489999999999999999999999999999999999999999
Q ss_pred CChh---hcc--cchhh---hhh---hCCC----------------C---------------------------------
Q 017980 234 LTVE---FFR--KLPQE---VEK---AGNP----------------G--------------------------------- 253 (363)
Q Consensus 234 i~td---~~~--~~~~~---~~~---~~~~----------------~--------------------------------- 253 (363)
|||| |.+ +..+. ..+ .+++ .
T Consensus 506 intnHpdf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (772)
T 3zvr_A 506 MNTNHEDFIGFANAQQRSNQMNKKKTSGNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYML 585 (772)
T ss_dssp CCTTCTTCCCC---------------------CCEEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTCCCEEEEE
T ss_pred CCCCChhhhchHHHHHHHHHHhhcccccCCccccceeeeeeeecccccccCCCccceeeccccccccccchhhhcccccc
Confidence 9995 322 11100 000 0000 0
Q ss_pred --C---------CCCC-------------------------------------------CCcccc-------C-------
Q 017980 254 --N---------SGNT-------------------------------------------ASQAVD-------R------- 265 (363)
Q Consensus 254 --~---------~~~~-------------------------------------------~~~~~~-------~------- 265 (363)
. ++.+ ..+... .
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (772)
T 3zvr_A 586 SVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGDKEKASETEENGSD 665 (772)
T ss_dssp ECTTEEEEEC-------CEEEEEEETTSSCSBTTBSEEEEEESSHHHHHHHHHHHHHTTCCBC-----------------
T ss_pred cccccccchhhhccccccccccccCCccccccchhhhhhhhccccccchhhHHhhhhcccCCccccccccccccCCcccc
Confidence 0 0000 000000 0
Q ss_pred -----CCc---hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHhhhhCCCHHHHH
Q 017980 266 -----YSD---GHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMME 337 (363)
Q Consensus 266 -----~~~---~~~~~i~~~~~aYy~va~krf~D~Vp~~I~~~Lv~~~~~~l~~~l~~~L~~~~~~~~~~ll~Ed~~~~~ 337 (363)
+++ .+++.|+.++.+||.|++|++.|.|||+|||+||+...+.++.+|+..||.. +.++.||.|+|+++.
T Consensus 666 ~~~~~~~~q~~~q~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ly~~--~~~~~lm~Es~~~~~ 743 (772)
T 3zvr_A 666 SFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSC--GDQNTLMEESAEQAQ 743 (772)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHT--CCTTTTTCCCHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCHHHHHhcCHHHHH
Confidence 011 1467899999999999999999999999999999999999999999999997 478999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccC
Q 017980 338 RRLQCAKRLELYKAARDEIDSVSWA 362 (363)
Q Consensus 338 ~R~~L~~~~~~L~~A~~~L~~~~~~ 362 (363)
||+++.+++..|++|+.++..+..+
T Consensus 744 ~r~~~~~~~~~l~~a~~ii~~i~~~ 768 (772)
T 3zvr_A 744 RRDEMLRMYHALKEALSIIGDINTT 768 (772)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999988654
No 3
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=300.63 Aligned_cols=255 Identities=13% Similarity=0.166 Sum_probs=192.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhccCCC---CCccchhhhhhcchhHhcccCCCCcccC----HHhHHHHHHhccCCCCC
Q 017980 74 DAGAQLYTILELCRAFDRIFKEHLDGGR---PGGDRIYGVFDNQLPAALRKLPFDRHLS----LQNVKKVVSEADGYQPH 146 (363)
Q Consensus 74 ~~~~~~~~L~~~~~~f~~~~~~~l~G~~---~gg~ri~~~f~~~f~~~l~~~~~~~~~~----~~~I~~~i~~~~G~e~~ 146 (363)
+++++..+|+++++.|.+.+.+++.|.. .||.||...+.+.|.+|...++...... ..+|.+..++++|+|+|
T Consensus 2 ~~~e~~~FLidkI~~F~~di~~l~~Gee~~~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGrELP 81 (271)
T 3ljb_A 2 DENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELP 81 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCceecccCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCcccC
Confidence 4678999999999999999999999997 4678999999999999876654332211 36788888999999999
Q ss_pred CCCcHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017980 147 LIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRL 226 (363)
Q Consensus 147 ~f~p~~~~~~L~~~qi~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~~~i~~l 226 (363)
+|+|+.+|+.||++||++|++||.+|++.|++++.+.+..++. .+|.+||+|++.++++|.+++.++..+|.++|+++
T Consensus 82 gFv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~--~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~~~ 159 (271)
T 3ljb_A 82 GFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLH 159 (271)
T ss_dssp -CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998874 79999999999999999999999999999999999
Q ss_pred HHHhhcCCChh--hcccchhhhhhhCCC-----CCCCCCCCccccCCCc-hHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 017980 227 VDMEASYLTVE--FFRKLPQEVEKAGNP-----GNSGNTASQAVDRYSD-GHFRRIGSNVSSYVGMVSETLRTTIPKAIV 298 (363)
Q Consensus 227 i~~E~~~i~td--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~i~~~~~aYy~va~krf~D~Vp~~I~ 298 (363)
++||...++.| |...+.....+..++ ..+ .+.....+ +. ..+.+|+.++.|||+||++|++|+|||+|+
T Consensus 160 ~~mE~~vytqD~~Y~~~l~~~r~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~Ei~~~l~sYf~i~~~rl~d~IP~~I~ 236 (271)
T 3ljb_A 160 FQMEQIVYCQDQVYRGALQKVREKELEEEKKKKSWD-FGAFQSSS--ATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQ 236 (271)
T ss_dssp HHHHTSCC-------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccCCHHHHHHHHHHHHHHhcccccccccc-cccccCCC--CccchHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 99999655445 443332111100000 000 00000111 22 356899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHhHhhhhCCCHHH
Q 017980 299 YCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAM 335 (363)
Q Consensus 299 ~~Lv~~~~~~l~~~l~~~L~~~~~~~~~~ll~Ed~~~ 335 (363)
++||+.+.+.|+.+|++.|++. +.++.||.||+++
T Consensus 237 ~~ll~~~~~~lQ~~ml~~l~~~--~~~~~LL~E~~d~ 271 (271)
T 3ljb_A 237 FFMLQTYGQQLQKAMLQLLQDK--DTYSWLLKERSDT 271 (271)
T ss_dssp HHHTHHHHHHHHHHHHHTTSCG--GGHHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHhch--hhHHHHhcCCCCC
Confidence 9999999999999999999987 6899999999975
No 4
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.33 E-value=6.2e-13 Score=127.06 Aligned_cols=76 Identities=62% Similarity=0.969 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhccCCCchhhhcccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhH
Q 017980 2 IVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGA 77 (363)
Q Consensus 2 ~~A~~~E~~FF~~~~~w~~l~~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~ 77 (363)
.+++..|..||.+||+|+.+.+++|+++|+.+|+++|.+||+++||.|+.+|+.++.+++++|++||+|+++++.+
T Consensus 255 ~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~lg~~~~~~~~~ 330 (360)
T 3t34_A 255 IAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRLGKPIAHGTDS 330 (360)
T ss_dssp HHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC--------------
T ss_pred HHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 3678899999999999999999999999999999999999999999999999999999999999999999976644
No 5
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.27 E-value=5.2e-12 Score=120.36 Aligned_cols=94 Identities=26% Similarity=0.479 Sum_probs=86.7
Q ss_pred HHHHHHHHHhccCCCchhhhcccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHH--H
Q 017980 3 VARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQL--Y 80 (363)
Q Consensus 3 ~A~~~E~~FF~~~~~w~~l~~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~--~ 80 (363)
++...|..||.+++.|++++.++|+..|++.|++.|..||+++||.|+.+|+.++..++.+|++||+++++++.++. .
T Consensus 250 ~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 329 (353)
T 2x2e_A 250 AALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDKHGTDSRVD 329 (353)
T ss_dssp HHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCCHHHH
T ss_pred HHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCchhhhhHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999998887765544 8
Q ss_pred HHHHHHHHHHHHHHhh
Q 017980 81 TILELCRAFDRIFKEH 96 (363)
Q Consensus 81 ~L~~~~~~f~~~~~~~ 96 (363)
+|++++++|++.|+..
T Consensus 330 ~~~~~~~~f~~~~~~~ 345 (353)
T 2x2e_A 330 EMLRMYHALKEALSII 345 (353)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998754
No 6
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.86 E-value=1.1e-05 Score=74.81 Aligned_cols=66 Identities=27% Similarity=0.484 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhccCCCchhhhcccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhc
Q 017980 2 IVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHL 67 (363)
Q Consensus 2 ~~A~~~E~~FF~~~~~w~~l~~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~L 67 (363)
.+....+.+||..+|+|.++..++|+..|...|.+.|..||+++||.++.+|+..|.+++++|++|
T Consensus 250 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~l~~~ 315 (315)
T 1jwy_B 250 RESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGELSTY 315 (315)
T ss_dssp HHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Confidence 456788899999989999888999999999999999999999999999999999999999999876
No 7
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=50.12 E-value=4.5 Score=22.90 Aligned_cols=25 Identities=28% Similarity=0.593 Sum_probs=20.1
Q ss_pred CCCchhhh-cccChHHHHHHHHHHHH
Q 017980 15 SPDYGHLA-GKMGSEYLAKLLSKHLE 39 (363)
Q Consensus 15 ~~~w~~l~-~r~G~~~L~~~Ls~lL~ 39 (363)
-|.|+..+ +|+|++.--..|.++|.
T Consensus 2 PPdYSa~P~grf~IPccp~~lKrLli 27 (32)
T 2esy_A 2 PPDYSAAPRGRFGIPFFPVHLKRLLI 27 (32)
T ss_dssp CCCCCSCCCSSSSCCSTHHHHHHHHH
T ss_pred CCccccCcCccccCccccccceeEEE
Confidence 47899998 99999987777777764
No 8
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=43.76 E-value=86 Score=22.68 Aligned_cols=56 Identities=9% Similarity=0.188 Sum_probs=41.1
Q ss_pred HHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHHHhh
Q 017980 40 SVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEH 96 (363)
Q Consensus 40 ~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~~L~~~~~~f~~~~~~~ 96 (363)
++|+++.-.+..++...-.+...=|+.+|...+- .+.--...-.++.+..+.+..|
T Consensus 5 ~~i~~Ei~~~~~~~~~~~~~i~aiL~~~gs~~p~-~~~lEsiAAKIIkDisdkId~C 60 (95)
T 3k4t_A 5 NQIQKEVSEILSDQKSMKADIKAILELLGSQNPI-KESLETVAAKIVNDLTKLINDC 60 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCH-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-hhhHHHHHHHHHHHHHHHHhcC
Confidence 5678888888899999999999999999987762 1233335566777777666554
No 9
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=36.75 E-value=27 Score=19.31 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=16.2
Q ss_pred HHHccChhHHHHHHHHHHHHH
Q 017980 41 VIRSRIPSITSLINKSIEELE 61 (363)
Q Consensus 41 ~I~~~LP~l~~eI~~~l~~~~ 61 (363)
-|+++|-.|+..|...|...+
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le 23 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLE 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888876554
No 10
>3at7_A Alginate-binding flagellin; two UP-and-DOWN four-helical bundles, ALGI structural protein; 2.10A {Sphingomonas}
Probab=34.98 E-value=52 Score=29.34 Aligned_cols=84 Identities=4% Similarity=0.069 Sum_probs=54.2
Q ss_pred HHHHhccCCCchhhhcccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCC------CCChhHHHHH
Q 017980 8 EREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPI------AVDAGAQLYT 81 (363)
Q Consensus 8 E~~FF~~~~~w~~l~~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~------~~~~~~~~~~ 81 (363)
|+.+|+.+..|.-..+--|+.+.-. .|...+.+.=|.|-.+|...+..+.+.|..+..+. ..-..+++..
T Consensus 178 ee~~~S~~~l~d~~aNl~G~~~vy~----~L~~ll~~~d~~L~~~i~~~~~~~~~~l~~~~~~~~~f~~yd~l~~~~~~~ 253 (283)
T 3at7_A 178 EEDRYSHTDLWDFQANFEGAKKIVD----LFRPLVVKDNRAFADKVDANFDTVFKTLAKYRTADGGFELYGKLSERDRKV 253 (283)
T ss_dssp CTTTTTCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCTTSCBCCGGGSCHHHHHH
T ss_pred cccCCccCcHHHHHHHHHHHHHHHH----HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhhccccCCCChhhhCHHHHHH
Confidence 3445543322222236677777666 45555666669999999999999999999996432 1112455667
Q ss_pred HHHHHHHHHHHHHh
Q 017980 82 ILELCRAFDRIFKE 95 (363)
Q Consensus 82 L~~~~~~f~~~~~~ 95 (363)
|.+.++.....+..
T Consensus 254 l~~~i~aL~e~Ls~ 267 (283)
T 3at7_A 254 LAGRVNTLAEDLSK 267 (283)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776666544
No 11
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=33.89 E-value=1.4e+02 Score=23.92 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHhhc-----CCCCCCChhHHHHHHHHHHHHHHHHHHh
Q 017980 48 SITSLINKSIEELESEMDHL-----GRPIAVDAGAQLYTILELCRAFDRIFKE 95 (363)
Q Consensus 48 ~l~~eI~~~l~~~~~eL~~L-----g~~~~~~~~~~~~~L~~~~~~f~~~~~~ 95 (363)
.++..+++++.+.+.++..- |+.|+.+|.+-..-+-..+.++..++..
T Consensus 11 ~lRadl~kri~qL~~ri~~n~~vQEGe~P~edp~~Ll~El~~~~~~L~~Li~~ 63 (154)
T 3kdq_A 11 AQRVEAQRRYSELNQLLLDVAKVQEGDQPAENPHEILTELEELTTRINDLVRR 63 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEETTCCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888754 8888888987666666666666555543
No 12
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=27.30 E-value=1.4e+02 Score=23.50 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=50.3
Q ss_pred HHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 017980 38 LESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGD 105 (363)
Q Consensus 38 L~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~~L~~~~~~f~~~~~~~l~G~~~gg~ 105 (363)
+.+-++..=|+|-..+........+.+..|+ |+. +.|+-+++..+...+.+.++|.-..-.
T Consensus 51 ~i~alK~KSp~L~~K~~~l~~~lk~Ki~~L~------Pea-k~Fv~kli~~~r~l~~~~~~G~k~~~~ 111 (140)
T 2w9y_A 51 MIDEVSKKHPELGKRLATVLEGNKKRLDGLS------PAA-VEYAKKLIHMVTTTLCSLTVGKPIDDA 111 (140)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHTTTTCC------HHH-HHHHHHHHHHHHHHHHHHHHTCCCCTH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHcCC------HHH-HHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 4556777889999999999999999999995 322 459999999999999999999764433
No 13
>4akl_A Nucleocapsid; viral protein, bunyaviridae, CCHFV, caspase-3; HET: PGE; 2.10A {Crimean-congo hemorrhagic fever virus} PDB: 3u3i_A
Probab=24.67 E-value=90 Score=28.96 Aligned_cols=95 Identities=21% Similarity=0.249 Sum_probs=51.5
Q ss_pred CCchhhh--cccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHH
Q 017980 16 PDYGHLA--GKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIF 93 (363)
Q Consensus 16 ~~w~~l~--~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~~L~~~~~~f~~~~ 93 (363)
|||.++- ++-|++-...-+.++-.-- =+.+-+++++.+.....-+..=-+...+ +.. ...+-.+...+....
T Consensus 215 pPwgdiNK~g~sG~~l~atg~~k~~e~e----G~~~~~~~~~~i~~L~~~~~~~kd~ld~-~~a-~~~~~~l~k~~a~A~ 288 (482)
T 4akl_A 215 PPWGDINKSGRSGIALVATGLAKLAETE----GKGVFDEAKKTVEALNGYLDKHKDEVDK-ASA-DNMVTNLLKHVAKAQ 288 (482)
T ss_dssp CTTSSTTCBCTTSCBHHHHHHHHHHHHH----CTHHHHHHHHHHHHHHHHHHHTGGGSCH-HHH-HHHHHHHHHHHHHHH
T ss_pred CCccccccccccCCccccchhhhhhhcc----cchhHHHHHHHHHHHHHHHHhccccccc-ccH-HHHHHHHHHHHHHHH
Confidence 8999995 8999988887776654333 3444444555554444444443333332 222 112333333333322
Q ss_pred HhhccCCC----CCccchhhhhhcchhHh
Q 017980 94 KEHLDGGR----PGGDRIYGVFDNQLPAA 118 (363)
Q Consensus 94 ~~~l~G~~----~gg~ri~~~f~~~f~~~ 118 (363)
. +.|.. ..|+.|..+|+..|.-+
T Consensus 289 e--L~k~s~a~raQGaqID~vFSSyyWl~ 315 (482)
T 4akl_A 289 E--LYKNSSALRAQGAQIDTVFSSYYWLY 315 (482)
T ss_dssp H--HHHSCHHHHHHHTCCCHHHHHHHHHH
T ss_pred H--HhcCchHHHhcCCccchhhHHHHHHH
Confidence 2 34443 35778888888766533
No 14
>4ecg_A Putative iron-regulated protein A; imelysin-like protein, putative metalloendopeptidase, struct genomics; HET: 1PE; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=24.24 E-value=91 Score=29.04 Aligned_cols=88 Identities=11% Similarity=0.122 Sum_probs=51.4
Q ss_pred HHHHhccCCCchhhhcccChHHHHHHHH---------HHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCCh--h
Q 017980 8 EREYFATSPDYGHLAGKMGSEYLAKLLS---------KHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDA--G 76 (363)
Q Consensus 8 E~~FF~~~~~w~~l~~r~G~~~L~~~Ls---------~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~--~ 76 (363)
|+.+|+.+..|.-..+--|+.++=.--. .-|...+...=|.|-.+|..++..+...|..++.|..... .
T Consensus 276 ~Es~~S~~Sl~d~~~Ni~gi~n~y~G~~~~~~~~~~g~sl~~ll~~~~~~L~~~i~~~f~~a~~~l~ai~~pf~~~~~~~ 355 (381)
T 4ecg_A 276 VESWYSWNSLDDYKNNIVSIKNAYFGGRDLDEESASESSLHALTKMINPTLDSLMVVQIDKTIDAINAIGYPFRNNLGDT 355 (381)
T ss_dssp STTTTTTCHHHHHHHHHHHHHHHHHTSTTCCGGGCCSSSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSCSSGGGCTTCH
T ss_pred hhHHhCCCcHHHHHHHHHHHHHHHhccccccCCccccccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcchhHHHHccCH
Confidence 5667765432222225555555541100 1233333334599999999999999999999998865322 2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 017980 77 AQLYTILELCRAFDRIFKE 95 (363)
Q Consensus 77 ~~~~~L~~~~~~f~~~~~~ 95 (363)
.+..-+++-+..-...+..
T Consensus 356 ~~v~~a~dal~~l~~~l~~ 374 (381)
T 4ecg_A 356 EHINTATEACADLTTGLGV 374 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554443
No 15
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=23.30 E-value=2e+02 Score=20.25 Aligned_cols=40 Identities=13% Similarity=0.290 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhc
Q 017980 28 EYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHL 67 (363)
Q Consensus 28 ~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~L 67 (363)
..+...|..-|-+-+...=|.....-..+|......|..|
T Consensus 35 Q~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l 74 (90)
T 4b6x_A 35 QLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHH
Confidence 4567778888888999999999999999999998888776
No 16
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=23.15 E-value=2.2e+02 Score=20.88 Aligned_cols=47 Identities=4% Similarity=0.109 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHHHh
Q 017980 49 ITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKE 95 (363)
Q Consensus 49 l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~~L~~~~~~f~~~~~~ 95 (363)
...+|+..|.++++=|.+|.-...+-|...|.-+...+..|...+..
T Consensus 50 ~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~ 96 (102)
T 2qyw_A 50 LVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAK 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777666665332222345566778888888777654
No 17
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=22.15 E-value=2.3e+02 Score=20.67 Aligned_cols=75 Identities=7% Similarity=0.069 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhHHhHhhhhCCCHHHHHHHHHHHHH
Q 017980 273 RIGSNVSSYVGMVSETLRTTIPK-------AIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKR 345 (363)
Q Consensus 273 ~i~~~~~aYy~va~krf~D~Vp~-------~I~~~Lv~~~~~~l~~~l~~~L~~~~~~~~~~ll~Ed~~~~~~R~~L~~~ 345 (363)
+....+++=.+|...|+..|... +-...|+..+ ..|.++|...+ .+-++-...=+.|+.+
T Consensus 4 ef~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~l-t~MH~~Ll~~i------------~~~ee~R~~yE~LQDk 70 (98)
T 3f1i_H 4 QFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSI-NGMHPQLLELL------------NQLDERRLYYEGLQDK 70 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHH-HHHHHHHHHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHH-HHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Confidence 44455555556666666665432 1111222222 23455554444 3334444455667777
Q ss_pred HHHHHHHHHHhhhhc
Q 017980 346 LELYKAARDEIDSVS 360 (363)
Q Consensus 346 ~~~L~~A~~~L~~~~ 360 (363)
+...+.|...|+.++
T Consensus 71 L~qi~eAR~ALdaLR 85 (98)
T 3f1i_H 71 LAQIRDARGALSALR 85 (98)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777776653
No 18
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=21.90 E-value=1.9e+02 Score=21.24 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHHHh
Q 017980 49 ITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKE 95 (363)
Q Consensus 49 l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~~L~~~~~~f~~~~~~ 95 (363)
...+|+..|.++++=|.+|.-...+-|...+.-+...+..|...+..
T Consensus 39 ~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~ 85 (102)
T 1vcs_A 39 MVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGK 85 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHH
Confidence 55667777777777777665221122234455677777777776644
No 19
>1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment, helix; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1dsj_A
Probab=21.88 E-value=64 Score=18.94 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=17.4
Q ss_pred cChHHHHHHHHHHHHHHHHc
Q 017980 25 MGSEYLAKLLSKHLESVIRS 44 (363)
Q Consensus 25 ~G~~~L~~~Ls~lL~~~I~~ 44 (363)
-|+.++.+-|.++|.-|++-
T Consensus 7 ~GveaiiriLQq~Lf~HfR~ 26 (35)
T 1bde_A 7 AGVEAIIRILQQLLFIHFRI 26 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 38899999999999999863
No 20
>2lhr_A Iron-regulated surface determinant protein H; heme acquisition, iron uptake, NEAT domain, hemoglobin recep metal transport; NMR {Staphylococcus aureus subsp}
Probab=21.73 E-value=1.1e+02 Score=20.82 Aligned_cols=27 Identities=11% Similarity=0.362 Sum_probs=22.6
Q ss_pred HHHHccChh-HHHHHHHHHHHHHHHHhh
Q 017980 40 SVIRSRIPS-ITSLINKSIEELESEMDH 66 (363)
Q Consensus 40 ~~I~~~LP~-l~~eI~~~l~~~~~eL~~ 66 (363)
+.|+..||+ ++.+-.++|.++..+|..
T Consensus 33 ~kiqdkLPeklkaeYk~KL~~tk~~Ld~ 60 (78)
T 2lhr_A 33 EKLQEKLPEKYKAEYKKKLDQTRVELAD 60 (78)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 568899994 888999999999888864
No 21
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=20.71 E-value=1.8e+02 Score=21.83 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=28.0
Q ss_pred cccChHHHHHHHHHHHHHHHHc---------cChhHHHHHHHHHHHHHHHHhhc
Q 017980 23 GKMGSEYLAKLLSKHLESVIRS---------RIPSITSLINKSIEELESEMDHL 67 (363)
Q Consensus 23 ~r~G~~~L~~~Ls~lL~~~I~~---------~LP~l~~eI~~~l~~~~~eL~~L 67 (363)
..+|++.|+.-.. .|-...+. .++.|..+|..-....+..|.++
T Consensus 64 ~~~Ga~~L~~~~~-~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~~ 116 (119)
T 3myf_A 64 CYCGVPTTQRLCQ-EIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQL 116 (119)
T ss_dssp TTTTCHHHHHHHH-HHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999998444 45555554 35556666666666666655554
Done!