Query 017980
Match_columns 363
No_of_seqs 136 out of 880
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 08:00:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017980.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017980hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e0ea_ a.4.10.1 (A:) N-termin 56.4 2.4 0.00017 25.4 1.6 29 2-33 6-34 (46)
2 d1k6ya1 a.4.10.1 (A:1-46) N-te 51.4 2.7 0.0002 25.2 1.2 30 1-33 5-34 (46)
3 d2fjca1 a.25.1.1 (A:27-177) Do 43.4 35 0.0026 24.9 7.2 34 42-75 42-75 (151)
4 d1ji5a_ a.25.1.1 (A:) Dodecame 29.7 89 0.0065 22.2 8.9 34 42-75 35-68 (142)
5 d2bk6a1 a.25.1.1 (A:7-156) Dod 29.1 67 0.0049 23.2 6.7 36 42-77 36-71 (150)
6 d1jiga_ a.25.1.1 (A:) Dodecame 26.9 1E+02 0.0074 21.9 9.2 34 42-75 39-72 (146)
7 d2yw6a1 a.25.1.1 (A:17-157) Do 26.5 67 0.0049 22.9 6.2 34 42-75 34-67 (141)
8 d1tjoa_ a.25.1.1 (A:) Dodecame 23.0 1.2E+02 0.0085 22.7 7.2 50 26-75 25-95 (180)
9 d1o9ra_ a.25.1.1 (A:) Dodecame 22.5 1.3E+02 0.0097 21.8 9.0 34 42-75 51-84 (162)
10 d1vcsa1 a.47.2.1 (A:8-96) Vesi 20.6 42 0.0031 22.5 3.4 47 49-95 32-78 (89)
No 1
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=56.35 E-value=2.4 Score=25.43 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhccCCCchhhhcccChHHHHHH
Q 017980 2 IVARRKEREYFATSPDYGHLAGKMGSEYLAKL 33 (363)
Q Consensus 2 ~~A~~~E~~FF~~~~~w~~l~~r~G~~~L~~~ 33 (363)
+.|.. |.+.| |.-|+.|...+|++.+..|
T Consensus 6 e~Aqe-~H~k~--H~N~~~L~~~F~lp~~vAr 34 (46)
T d1e0ea_ 6 EPAQE-EHEKY--HSNVKELSHKFGIPNLVAR 34 (46)
T ss_dssp HHHHH-HHHHH--CCCHHHHHHHTCCCHHHHH
T ss_pred HHHHH-HHHHH--ccCHHHHHHHcCCCHHHHH
Confidence 44444 66666 3459999999999988764
No 2
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=51.43 E-value=2.7 Score=25.17 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHhccCCCchhhhcccChHHHHHH
Q 017980 1 MIVARRKEREYFATSPDYGHLAGKMGSEYLAKL 33 (363)
Q Consensus 1 ~~~A~~~E~~FF~~~~~w~~l~~r~G~~~L~~~ 33 (363)
|++|.. |.+.| |.-|+.|...+|++.+..|
T Consensus 5 Ie~Aqe-~H~k~--H~n~~~L~~~F~ip~~vAr 34 (46)
T d1k6ya1 5 IDKAQE-EHEKY--HSNWRAMASDFNLPPVVAK 34 (46)
T ss_dssp HHHHHH-HHHHH--CCCHHHHHHHHTCCHHHHH
T ss_pred hHHHHH-HHHHH--hcCHHHHHHHcCCCHHHHH
Confidence 345554 66677 4459999999999987764
No 3
>d2fjca1 a.25.1.1 (A:27-177) Dodecameric ferritin homolog {Treponema pallidum, TpF1 [TaxId: 160]}
Probab=43.40 E-value=35 Score=24.92 Aligned_cols=34 Identities=6% Similarity=0.204 Sum_probs=28.5
Q ss_pred HHccChhHHHHHHHHHHHHHHHHhhcCCCCCCCh
Q 017980 42 IRSRIPSITSLINKSIEELESEMDHLGRPIAVDA 75 (363)
Q Consensus 42 I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~ 75 (363)
+..-|-++..++......+-+++..||..|+.++
T Consensus 42 lH~~f~~~y~~~~~~~D~iAERi~~Lgg~p~~t~ 75 (151)
T d2fjca1 42 VHELLEEYYVSVTEAFDTIAERLLQLGAQAPASM 75 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCH
Confidence 5677888889999999999999999998777654
No 4
>d1ji5a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus anthracis, Dlp-1 [TaxId: 1392]}
Probab=29.73 E-value=89 Score=22.20 Aligned_cols=34 Identities=9% Similarity=0.203 Sum_probs=28.8
Q ss_pred HHccChhHHHHHHHHHHHHHHHHhhcCCCCCCCh
Q 017980 42 IRSRIPSITSLINKSIEELESEMDHLGRPIAVDA 75 (363)
Q Consensus 42 I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~ 75 (363)
+...|-.+..++......+-+++..||-.|+.++
T Consensus 35 ~H~~~~e~y~~~~~~~D~lAERi~~Lgg~p~~~~ 68 (142)
T d1ji5a_ 35 LHEKFEELYTESATHIDEIAERILAIGGKPVATM 68 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcCH
Confidence 5566778888999999999999999998887655
No 5
>d2bk6a1 a.25.1.1 (A:7-156) Dodecameric ferritin homolog {Listeria innocua [TaxId: 1642]}
Probab=29.07 E-value=67 Score=23.20 Aligned_cols=36 Identities=8% Similarity=0.201 Sum_probs=29.1
Q ss_pred HHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhH
Q 017980 42 IRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGA 77 (363)
Q Consensus 42 I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~ 77 (363)
+...|-.+..++.+....+-+++..||..|+.++.+
T Consensus 36 lH~~~e~~y~~~~~~~D~iAERi~~Lg~~p~~~~~~ 71 (150)
T d2bk6a1 36 LHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKE 71 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 556677788899999999999999999888766533
No 6
>d1jiga_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus anthracis, Dlp-2 [TaxId: 1392]}
Probab=26.91 E-value=1e+02 Score=21.95 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=28.6
Q ss_pred HHccChhHHHHHHHHHHHHHHHHhhcCCCCCCCh
Q 017980 42 IRSRIPSITSLINKSIEELESEMDHLGRPIAVDA 75 (363)
Q Consensus 42 I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~ 75 (363)
+...|-++..++......+-+++..||..|+.++
T Consensus 39 lH~~~~e~~~~~~~~~D~iAERi~~lgg~p~~~~ 72 (146)
T d1jiga_ 39 LHEKFEEFYNEAGTYIDELAERILALEGKPLATM 72 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCH
Confidence 5567788889999999999999999998776554
No 7
>d2yw6a1 a.25.1.1 (A:17-157) Dodecameric ferritin homolog {Mycobacterium smegmatis [TaxId: 1772]}
Probab=26.47 E-value=67 Score=22.93 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=27.5
Q ss_pred HHccChhHHHHHHHHHHHHHHHHhhcCCCCCCCh
Q 017980 42 IRSRIPSITSLINKSIEELESEMDHLGRPIAVDA 75 (363)
Q Consensus 42 I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~ 75 (363)
+...|-++..++.+....+-+++..||.+|+.++
T Consensus 34 ~H~~fee~y~~~~~~~D~iAERi~~Lg~~p~~~~ 67 (141)
T d2yw6a1 34 VHEMIDPQVELVRGYADEVAERIATLGKSPKGTP 67 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCH
Confidence 4455677788999999999999999998877654
No 8
>d1tjoa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=22.99 E-value=1.2e+02 Score=22.65 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHHHH---------------------HHccChhHHHHHHHHHHHHHHHHhhcCCCCCCCh
Q 017980 26 GSEYLAKLLSKHLESV---------------------IRSRIPSITSLINKSIEELESEMDHLGRPIAVDA 75 (363)
Q Consensus 26 G~~~L~~~Ls~lL~~~---------------------I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~ 75 (363)
.++.+.+.|+.+|.+. +...|-++..++......+-+++..||-.|+.++
T Consensus 25 ~~~~~i~~Ln~~LA~~~~l~~k~~~~HWnv~G~~F~~lH~~fee~y~~~~~~~D~iAERI~~LGg~p~~~~ 95 (180)
T d1tjoa_ 25 RAEQCVDALNADLANVYVLYHQLKKHHWNVEGAEFRDLHLFLGEAAETAEEVADELAERVQALGGVPHASP 95 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhheeeeCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcCH
Confidence 3457777788877765 6677788888899999999999999997776554
No 9
>d1o9ra_ a.25.1.1 (A:) Dodecameric ferritin homolog {Agrobacterium tumefaciens, Dps [TaxId: 358]}
Probab=22.50 E-value=1.3e+02 Score=21.77 Aligned_cols=34 Identities=6% Similarity=0.166 Sum_probs=28.5
Q ss_pred HHccChhHHHHHHHHHHHHHHHHhhcCCCCCCCh
Q 017980 42 IRSRIPSITSLINKSIEELESEMDHLGRPIAVDA 75 (363)
Q Consensus 42 I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~ 75 (363)
+...|-.+..++.+....+-+++..||-.|+.++
T Consensus 51 lH~~~~~~~~~~~~~~D~iAERi~~LG~~p~~~~ 84 (162)
T d1o9ra_ 51 VHELLDTFRTQLDNHGDTIAERVVQLGGTALGSL 84 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCCCCCcCH
Confidence 4566778889999999999999999998876554
No 10
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.56 E-value=42 Score=22.51 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHHHh
Q 017980 49 ITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKE 95 (363)
Q Consensus 49 l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~~L~~~~~~f~~~~~~ 95 (363)
...+|+..+.++.+=|++|.-...+-|...+.-+...+..|...+..
T Consensus 32 ~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~ 78 (89)
T d1vcsa1 32 MVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGK 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777776332222334566777778888766543
Done!