Query 017981
Match_columns 363
No_of_seqs 148 out of 1805
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 05:07:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.8 6E-23 1.3E-27 171.5 -0.9 285 10-356 97-392 (419)
2 KOG4341 F-box protein containi 99.6 1.2E-18 2.7E-23 152.1 -7.3 221 8-249 68-304 (483)
3 PLN00113 leucine-rich repeat r 99.2 2.5E-11 5.4E-16 125.5 5.3 233 116-362 93-343 (968)
4 KOG4194 Membrane glycoprotein 99.0 2.8E-11 6.1E-16 110.8 -0.2 210 141-361 197-426 (873)
5 PLN00113 leucine-rich repeat r 99.0 3E-10 6.4E-15 117.6 5.9 83 116-200 164-248 (968)
6 PF12937 F-box-like: F-box-lik 99.0 4.3E-10 9.3E-15 70.1 3.0 36 11-46 1-36 (47)
7 cd00116 LRR_RI Leucine-rich re 98.8 8E-10 1.7E-14 99.6 0.6 260 90-363 25-319 (319)
8 cd00116 LRR_RI Leucine-rich re 98.8 6.9E-10 1.5E-14 100.0 -0.3 238 116-363 23-290 (319)
9 KOG4194 Membrane glycoprotein 98.8 5.6E-10 1.2E-14 102.5 -1.2 189 131-337 210-428 (873)
10 KOG4341 F-box protein containi 98.7 1.8E-09 3.8E-14 95.4 -0.2 165 161-358 292-459 (483)
11 KOG3207 Beta-tubulin folding c 98.6 1.1E-09 2.5E-14 97.1 -3.8 205 140-361 120-336 (505)
12 PLN03210 Resistant to P. syrin 98.6 5.5E-08 1.2E-12 101.8 6.2 77 117-198 590-667 (1153)
13 KOG1909 Ran GTPase-activating 98.6 6.9E-09 1.5E-13 89.8 -0.6 194 160-363 89-310 (382)
14 PF00646 F-box: F-box domain; 98.6 1.6E-08 3.4E-13 63.4 1.1 39 10-48 2-40 (48)
15 PLN03210 Resistant to P. syrin 98.5 1E-07 2.3E-12 99.7 6.0 80 116-199 634-715 (1153)
16 smart00256 FBOX A Receptor for 98.5 1.2E-07 2.7E-12 57.0 2.6 34 14-47 1-34 (41)
17 KOG3207 Beta-tubulin folding c 98.5 1.6E-08 3.4E-13 90.0 -2.0 157 138-307 169-338 (505)
18 KOG1909 Ran GTPase-activating 98.4 3.4E-08 7.4E-13 85.5 -0.1 216 138-362 27-281 (382)
19 KOG2120 SCF ubiquitin ligase, 98.3 6E-09 1.3E-13 88.3 -7.8 180 164-360 186-372 (419)
20 PF14580 LRR_9: Leucine-rich r 98.3 5.2E-08 1.1E-12 78.6 -3.1 126 117-247 20-148 (175)
21 KOG0444 Cytoskeletal regulator 98.2 2.2E-08 4.7E-13 93.1 -7.2 206 130-362 92-302 (1255)
22 PRK15387 E3 ubiquitin-protein 98.2 4.6E-06 9.9E-11 82.4 7.2 35 326-363 423-457 (788)
23 KOG1947 Leucine rich repeat pr 98.1 7.5E-08 1.6E-12 91.9 -5.6 132 115-248 187-330 (482)
24 KOG0618 Serine/threonine phosp 98.1 7.8E-08 1.7E-12 93.1 -6.0 208 104-337 254-488 (1081)
25 KOG0444 Cytoskeletal regulator 98.1 5.9E-08 1.3E-12 90.3 -7.0 222 117-363 56-280 (1255)
26 PRK15370 E3 ubiquitin-protein 98.0 4.2E-06 9.1E-11 82.8 4.5 213 116-363 199-427 (754)
27 PF14580 LRR_9: Leucine-rich r 98.0 1.2E-07 2.6E-12 76.4 -5.5 107 138-249 16-123 (175)
28 PRK15387 E3 ubiquitin-protein 98.0 1.3E-05 2.7E-10 79.3 7.2 113 117-251 202-314 (788)
29 KOG1259 Nischarin, modulator o 98.0 9.6E-07 2.1E-11 75.3 -0.8 206 130-362 171-410 (490)
30 PRK15370 E3 ubiquitin-protein 97.9 1.3E-05 2.9E-10 79.4 5.5 119 117-253 179-297 (754)
31 KOG2982 Uncharacterized conser 97.9 9.3E-06 2E-10 69.4 3.1 202 142-362 46-260 (418)
32 KOG0617 Ras suppressor protein 97.8 4.2E-07 9.1E-12 71.2 -5.1 62 136-199 28-90 (264)
33 KOG1947 Leucine rich repeat pr 97.8 3.4E-07 7.3E-12 87.3 -7.6 111 140-251 187-307 (482)
34 KOG0472 Leucine-rich repeat pr 97.8 1.1E-06 2.4E-11 77.8 -4.3 36 325-363 505-540 (565)
35 KOG3665 ZYG-1-like serine/thre 97.7 1.9E-05 4E-10 77.6 1.7 61 141-201 122-186 (699)
36 KOG0618 Serine/threonine phosp 97.6 2.2E-06 4.9E-11 83.3 -5.2 185 161-362 239-441 (1081)
37 PF13855 LRR_8: Leucine rich r 97.3 8.2E-05 1.8E-09 49.0 1.2 58 141-199 1-60 (61)
38 KOG4237 Extracellular matrix p 97.3 7.9E-05 1.7E-09 66.2 0.8 225 117-349 68-373 (498)
39 COG5238 RNA1 Ran GTPase-activa 97.3 0.00013 2.8E-09 61.7 1.9 177 160-361 89-282 (388)
40 KOG2739 Leucine-rich acidic nu 97.2 2.4E-05 5.2E-10 65.7 -2.7 131 117-249 19-153 (260)
41 KOG3665 ZYG-1-like serine/thre 97.1 5.4E-05 1.2E-09 74.4 -2.4 137 113-252 119-263 (699)
42 KOG2982 Uncharacterized conser 97.1 7.6E-05 1.7E-09 63.9 -1.2 180 116-307 71-261 (418)
43 KOG0617 Ras suppressor protein 97.1 1.1E-05 2.3E-10 63.5 -6.1 128 116-251 56-185 (264)
44 KOG1644 U2-associated snRNP A' 97.0 0.0015 3.2E-08 53.1 5.2 104 141-248 42-149 (233)
45 KOG4237 Extracellular matrix p 97.0 2.3E-05 4.9E-10 69.5 -5.6 208 143-363 69-334 (498)
46 PF07723 LRR_2: Leucine Rich R 97.0 0.001 2.2E-08 35.1 2.8 25 164-188 1-26 (26)
47 PF13855 LRR_8: Leucine rich r 96.5 0.0015 3.1E-08 42.9 1.7 56 117-174 2-60 (61)
48 PF12799 LRR_4: Leucine Rich r 96.4 0.001 2.2E-08 40.4 0.5 34 142-175 2-36 (44)
49 KOG0472 Leucine-rich repeat pr 96.3 9.7E-06 2.1E-10 72.0 -12.2 45 132-176 128-173 (565)
50 KOG1859 Leucine-rich repeat pr 96.2 0.0011 2.4E-08 63.7 -0.1 175 88-272 55-291 (1096)
51 PLN03150 hypothetical protein; 96.2 0.0033 7.2E-08 61.9 3.1 105 142-250 419-526 (623)
52 KOG1259 Nischarin, modulator o 96.2 0.0056 1.2E-07 52.9 4.0 154 184-362 210-385 (490)
53 COG4886 Leucine-rich repeat (L 96.1 0.0015 3.3E-08 60.7 0.3 170 138-335 113-287 (394)
54 KOG0281 Beta-TrCP (transducin 96.1 0.0025 5.3E-08 55.6 1.2 37 8-44 72-112 (499)
55 KOG2123 Uncharacterized conser 95.9 0.00047 1E-08 58.7 -4.0 81 117-200 20-100 (388)
56 PRK15386 type III secretion pr 95.8 0.022 4.8E-07 52.2 6.0 131 116-268 52-185 (426)
57 KOG3864 Uncharacterized conser 95.4 0.0096 2.1E-07 48.5 2.0 70 284-359 114-184 (221)
58 PF12799 LRR_4: Leucine Rich r 95.4 0.0058 1.3E-07 37.0 0.6 38 163-202 1-38 (44)
59 KOG0531 Protein phosphatase 1, 95.3 0.00084 1.8E-08 62.8 -5.0 105 137-250 91-197 (414)
60 COG5238 RNA1 Ran GTPase-activa 95.3 0.021 4.6E-07 48.7 3.8 61 140-200 29-104 (388)
61 COG4886 Leucine-rich repeat (L 95.2 0.0031 6.8E-08 58.6 -1.6 188 145-362 97-288 (394)
62 KOG4658 Apoptotic ATPase [Sign 95.1 0.019 4.1E-07 58.5 3.6 105 140-250 544-653 (889)
63 PLN03215 ascorbic acid mannose 95.0 0.014 3.1E-07 52.7 2.3 38 10-47 3-41 (373)
64 KOG2997 F-box protein FBX9 [Ge 95.0 0.013 2.9E-07 50.7 1.9 35 9-43 105-144 (366)
65 KOG1644 U2-associated snRNP A' 94.9 0.036 7.7E-07 45.3 4.0 102 162-268 41-148 (233)
66 KOG2123 Uncharacterized conser 94.2 0.004 8.7E-08 53.2 -3.0 78 213-305 20-98 (388)
67 PLN03150 hypothetical protein; 93.1 0.094 2E-06 51.8 3.8 104 118-223 420-526 (623)
68 KOG4658 Apoptotic ATPase [Sign 92.9 0.094 2E-06 53.6 3.6 153 139-305 521-678 (889)
69 smart00367 LRR_CC Leucine-rich 92.6 0.096 2.1E-06 27.5 1.7 25 324-348 1-25 (26)
70 KOG2739 Leucine-rich acidic nu 91.8 0.058 1.3E-06 45.8 0.5 43 320-362 60-102 (260)
71 KOG0274 Cdc4 and related F-box 91.8 0.083 1.8E-06 50.8 1.5 39 6-44 103-141 (537)
72 KOG0531 Protein phosphatase 1, 90.3 0.096 2.1E-06 49.1 0.5 101 117-224 96-198 (414)
73 PF07723 LRR_2: Leucine Rich R 88.8 0.49 1.1E-05 24.8 2.3 26 326-351 1-26 (26)
74 PF13516 LRR_6: Leucine Rich r 88.4 0.16 3.4E-06 26.0 0.2 22 162-183 1-22 (24)
75 PRK15386 type III secretion pr 88.3 1.5 3.3E-05 40.6 6.6 115 116-249 72-187 (426)
76 PF13013 F-box-like_2: F-box-l 86.7 0.43 9.3E-06 35.1 1.7 30 10-39 21-50 (109)
77 KOG1859 Leucine-rich repeat pr 86.1 0.046 9.9E-07 53.1 -4.6 82 136-222 204-289 (1096)
78 KOG0532 Leucine-rich repeat (L 84.8 0.038 8.2E-07 52.1 -5.6 164 144-337 78-246 (722)
79 KOG0532 Leucine-rich repeat (L 81.8 0.06 1.3E-06 50.8 -5.6 86 133-222 90-176 (722)
80 PF13504 LRR_7: Leucine rich r 80.8 0.98 2.1E-05 20.9 1.0 13 142-154 2-14 (17)
81 PF08387 FBD: FBD; InterPro: 78.5 2.3 5E-05 26.4 2.5 35 325-359 14-50 (51)
82 KOG3864 Uncharacterized conser 76.1 1.8 3.9E-05 35.7 1.8 50 311-361 112-161 (221)
83 PF09372 PRANC: PRANC domain; 75.6 2.1 4.6E-05 30.8 2.0 25 9-33 70-94 (97)
84 PF00560 LRR_1: Leucine Rich R 74.6 1.8 3.8E-05 21.5 0.9 13 142-154 1-13 (22)
85 smart00368 LRR_RI Leucine rich 70.4 2 4.2E-05 22.9 0.6 21 163-183 2-22 (28)
86 KOG3926 F-box proteins [Amino 68.2 2 4.3E-05 36.8 0.4 49 10-58 201-256 (332)
87 KOG3763 mRNA export factor TAP 68.2 0.99 2.1E-05 42.7 -1.5 66 161-226 216-284 (585)
88 KOG4308 LRR-containing protein 62.3 0.22 4.8E-06 47.2 -7.0 176 137-363 111-302 (478)
89 KOG4579 Leucine-rich repeat (L 61.7 1.7 3.8E-05 33.5 -0.9 59 140-200 52-112 (177)
90 smart00579 FBD domain in FBox 61.7 9.8 0.00021 25.4 2.8 36 326-361 6-43 (72)
91 KOG4579 Leucine-rich repeat (L 42.1 9.1 0.0002 29.7 0.2 82 116-199 51-134 (177)
92 PF13306 LRR_5: Leucine rich r 41.2 30 0.00064 25.8 2.9 57 138-196 9-66 (129)
93 smart00370 LRR Leucine-rich re 39.2 24 0.00052 17.9 1.5 15 141-155 2-16 (26)
94 smart00369 LRR_TYP Leucine-ric 39.2 24 0.00052 17.9 1.5 15 141-155 2-16 (26)
95 PF01827 FTH: FTH domain; Int 38.7 1.7E+02 0.0037 22.1 7.6 116 74-195 2-124 (142)
96 KOG4408 Putative Mg2+ and Co2+ 32.0 13 0.00028 33.1 -0.5 37 11-47 8-44 (386)
97 PF03448 MgtE_N: MgtE intracel 29.5 74 0.0016 22.6 3.3 32 3-34 38-69 (102)
98 PF08004 DUF1699: Protein of u 28.4 94 0.002 23.5 3.5 31 326-358 18-48 (131)
99 smart00446 LRRcap occurring C- 25.4 55 0.0012 17.2 1.4 16 345-360 7-22 (26)
100 PRK09718 hypothetical protein; 24.0 3.4E+02 0.0074 26.0 7.1 27 327-355 291-317 (512)
101 smart00365 LRR_SD22 Leucine-ri 22.9 37 0.00081 17.7 0.5 10 164-173 3-12 (26)
102 PF05725 FNIP: FNIP Repeat; I 21.5 1.1E+02 0.0024 18.0 2.5 9 239-247 12-20 (44)
103 smart00364 LRR_BAC Leucine-ric 20.3 41 0.00089 17.6 0.3 13 351-363 2-14 (26)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6e-23 Score=171.48 Aligned_cols=285 Identities=20% Similarity=0.182 Sum_probs=192.1
Q ss_pred ccCCCChHHHHHHhcCCChhHhhhhhhhccchhhh------hccCcceEEecCcchhhhcccccchhhhhHHHHHHHHHH
Q 017981 10 RISCLPNAILCHILSFLPTKYAVATCVLSSTWKLV------WTSLPNLCFDDRLCLEFQRNLDLSTVASTRFENFVHRVL 83 (363)
Q Consensus 10 ~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 83 (363)
.+..|||||+..||+.|+.+|+++++.|||||+++ |.. +++......+. . ..+ +
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p~------------~----l~~-l 156 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHPD------------V----LGR-L 156 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccChh------------H----HHH-H
Confidence 37899999999999999999999999999999864 443 33333222211 1 222 2
Q ss_pred hcCCCCcceEEEEecCCCChhhHHHHHHHHHhCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CCccc
Q 017981 84 LSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIF 161 (363)
Q Consensus 84 ~~~~~~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~ 161 (363)
.+++ |..+++-......+..++-. ..++.+++.++++........+--.+..|++|+.|+|.+..+.++ ...+.
T Consensus 157 ~~rg--V~v~Rlar~~~~~prlae~~--~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk 232 (419)
T KOG2120|consen 157 LSRG--VIVFRLARSFMDQPRLAEHF--SPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK 232 (419)
T ss_pred HhCC--eEEEEcchhhhcCchhhhhh--hhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc
Confidence 2222 33343332221111111111 123347999999887766667777778899999999999999865 34457
Q ss_pred CcccceeeeeeEE-EccchHHHHhccCCccceEEEeeeEeCCCceeEEE--ecCCcceEEEEecCCccccCCceEEEEec
Q 017981 162 FPSAKILHVILNT-IDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI--PSLTLKRLRLELEAPEEDYITKYKVIIRA 238 (363)
Q Consensus 162 ~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 238 (363)
..+|+.|+|+.+. ++.-+++-++++|..|.+|.|.+|..........+ .+++|+.|++++|...-.......++..+
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence 8899999999996 65558899999999999999999974332111112 35899999999985432222334455677
Q ss_pred cCcceEEEeecCCCceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccC
Q 017981 239 PNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYAND 318 (363)
Q Consensus 239 p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~ 318 (363)
|+|..|+++++.. |+ +.+...+-+++-|++|+++.+....-+.+ .
T Consensus 313 p~l~~LDLSD~v~----------l~---------------------~~~~~~~~kf~~L~~lSlsRCY~i~p~~~---~- 357 (419)
T KOG2120|consen 313 PNLVHLDLSDSVM----------LK---------------------NDCFQEFFKFNYLQHLSLSRCYDIIPETL---L- 357 (419)
T ss_pred Cceeeeccccccc----------cC---------------------chHHHHHHhcchheeeehhhhcCCChHHe---e-
Confidence 8888887777643 11 11677777888899999988754111111 1
Q ss_pred CCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcce
Q 017981 319 HSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESI 356 (363)
Q Consensus 319 ~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L 356 (363)
.+...+.|..|++.++. .+..+.-+.+.||+|+--
T Consensus 358 -~l~s~psl~yLdv~g~v--sdt~mel~~e~~~~lkin 392 (419)
T KOG2120|consen 358 -ELNSKPSLVYLDVFGCV--SDTTMELLKEMLSHLKIN 392 (419)
T ss_pred -eeccCcceEEEEecccc--CchHHHHHHHhCcccccc
Confidence 23456779999998874 555788888999998754
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.64 E-value=1.2e-18 Score=152.07 Aligned_cols=221 Identities=21% Similarity=0.269 Sum_probs=128.0
Q ss_pred CcccC-CCChHHHHHHhcCCChhHhhhhhhhccchhhh------hccCcceEEecCcchhhhcccccchhhhhHHHHHHH
Q 017981 8 EDRIS-CLPNAILCHILSFLPTKYAVATCVLSSTWKLV------WTSLPNLCFDDRLCLEFQRNLDLSTVASTRFENFVH 80 (363)
Q Consensus 8 ~d~i~-~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (363)
++.++ .||+|++.+|||+|+++.+++++++|+-|..+ |..+.-..|.... + ..+|.
T Consensus 68 ~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv--------~---------g~VV~ 130 (483)
T KOG4341|consen 68 NNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV--------D---------GGVVE 130 (483)
T ss_pred cccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC--------C---------Cccee
Confidence 34454 59999999999999999999999999999864 4433221221110 0 11233
Q ss_pred HHHhcCCCCcceEEEEecCCCChhhHHHHHHHHHhCCceEEEEEcCCCc-cccCCcccccCCcccEEEecccccccCC--
Q 017981 81 RVLLSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDE-CIELPHCIYTCKTLEVLKLDMNFFIKTP-- 157 (363)
Q Consensus 81 ~~l~~~~~~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~~~-- 157 (363)
....+.++.++.++++.+.....+.+.... ...+++++|.+..+..- ...+-.....|++|++|.|..|...+..
T Consensus 131 ~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~--~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 131 NMISRCGGFLKELSLRGCRAVGDSSLRTFA--SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred hHhhhhccccccccccccccCCcchhhHHh--hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence 334444466777777766644444433322 22457777766555421 1112222234777777777776544331
Q ss_pred --CcccCcccceeeeeeEE-EccchHHHHhccCCccceEEEeeeEeCCCcee---EEEecCCcceEEEEecCCccccCCc
Q 017981 158 --PTIFFPSAKILHVILNT-IDNNFSDWLFSKCPALEDLSIKGYIYGTDSVT---LNIPSLTLKRLRLELEAPEEDYITK 231 (363)
Q Consensus 158 --~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~---l~i~~~~L~~L~l~~~~~~~~~~~~ 231 (363)
-..+||+|+.|++++|. +.+.+++.+..+|..|+.+.+++|.-.+. +. ....++-+.++++..|...++ ...
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l-e~l~~~~~~~~~i~~lnl~~c~~lTD-~~~ 286 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL-EALLKAAAYCLEILKLNLQHCNQLTD-EDL 286 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH-HHHHHHhccChHhhccchhhhccccc-hHH
Confidence 23367777777777775 44447777777777777777777652222 11 122235566666666654433 122
Q ss_pred eEEEEeccCcceEEEeec
Q 017981 232 YKVIIRAPNLEQLYIRDH 249 (363)
Q Consensus 232 ~~~~~~~p~L~~L~l~~~ 249 (363)
..+.-.+..|+.|.++++
T Consensus 287 ~~i~~~c~~lq~l~~s~~ 304 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSC 304 (483)
T ss_pred HHHhhhhhHhhhhcccCC
Confidence 233344566677777665
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.16 E-value=2.5e-11 Score=125.54 Aligned_cols=233 Identities=16% Similarity=0.177 Sum_probs=120.0
Q ss_pred CCceEEEEEcCCCccccCCcccc-cCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981 116 RNVREIEISLNDDECIELPHCIY-TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (363)
+.++.|++..+.. ...+|..++ .+++|++|+|++|.+.+..+...+++|++|+|.++.+.+. +...+..+++|++|+
T Consensus 93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEEE
Confidence 4777777765443 235666555 6778888888777766443445677777777777766543 223355677777777
Q ss_pred EeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCc---eeeecCCCceEEEEeee
Q 017981 195 IKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL---YVVHELHSLTKAVVDYG 270 (363)
Q Consensus 195 L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~L~~~~l~~~ 270 (363)
|.+|...+. ..-.+ ..++|+.|++.+|..... .......+++|++|.++++.... ..++++++|+.+++..+
T Consensus 171 L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 171 LGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQ---IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred CccCccccc-CChhhhhCcCCCeeeccCCCCcCc---CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 777654322 11111 236677777766654321 11111334556666665544321 12344555555555433
Q ss_pred eceecc-------------CCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC
Q 017981 271 IECILD-------------YDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA 337 (363)
Q Consensus 271 ~~~~~~-------------~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 337 (363)
...... ....+.........+..+++|+.|+++.+.+ ... ... .+..+++|+.|++.++..
T Consensus 247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l---~~~--~p~-~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL---SGE--IPE-LVIQLQNLEILHLFSNNF 320 (968)
T ss_pred eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee---ccC--CCh-hHcCCCCCcEEECCCCcc
Confidence 210000 0000011111223344555666666655433 110 001 233556777777776543
Q ss_pred CChHHHHHHHHhCCCCcceEEeeec
Q 017981 338 CGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 338 ~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
.. .++..+..+|+|+.|++..++
T Consensus 321 ~~--~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 321 TG--KIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred CC--cCChhHhcCCCCCEEECcCCC
Confidence 21 234456778888888887665
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.05 E-value=2.8e-11 Score=110.79 Aligned_cols=210 Identities=18% Similarity=0.130 Sum_probs=98.6
Q ss_pred CcccEEEecccccccCC--CcccCcccceeeeeeEEEccc-hHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceE
Q 017981 141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRL 217 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L 217 (363)
.+|..|+|+.|++...| .+..+|.|+.|+|..+++.-- ++. +.+.|+|+.|.|.+|............+.+++.|
T Consensus 197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt--FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l 274 (873)
T KOG4194|consen 197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT--FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHL 274 (873)
T ss_pred chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh--hcCchhhhhhhhhhcCcccccCcceeeeccccee
Confidence 34444555544444332 222355555555555544322 222 4455555555555554322212234445566666
Q ss_pred EEEecCCccccCCceEEEEeccCcceEEEeecCCCceee---ecCCCceEEEEeeeeceec--cCC-----------Cch
Q 017981 218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVV---HELHSLTKAVVDYGIECIL--DYD-----------SPE 281 (363)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~---~~~~~L~~~~l~~~~~~~~--~~~-----------~~~ 281 (363)
++..|..... ..........|+.|+++.+....+.+ +-+++|++++++.+.-... +.| ..+
T Consensus 275 ~L~~N~l~~v---n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 275 NLETNRLQAV---NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred ecccchhhhh---hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence 6666644321 11223445566666666554443333 2356677776665542110 000 011
Q ss_pred hhHHHHHHHhhccCcceEEEEeCCcccccccccc-ccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEee
Q 017981 282 DVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDY-ANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEE 360 (363)
Q Consensus 282 ~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~ 360 (363)
.+..-....+.++++|++|++..+.+ .+..+ ... .+..++.|++|.+.++.--. .-..-+...++||.|++..
T Consensus 352 si~~l~e~af~~lssL~~LdLr~N~l---s~~IEDaa~-~f~gl~~LrkL~l~gNqlk~--I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 352 SIDHLAEGAFVGLSSLHKLDLRSNEL---SWCIEDAAV-AFNGLPSLRKLRLTGNQLKS--IPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred chHHHHhhHHHHhhhhhhhcCcCCeE---EEEEecchh-hhccchhhhheeecCceeee--cchhhhccCcccceecCCC
Confidence 12222444566666777777766655 43333 111 23345566666666653211 1122344566777776655
Q ss_pred e
Q 017981 361 V 361 (363)
Q Consensus 361 ~ 361 (363)
|
T Consensus 426 N 426 (873)
T KOG4194|consen 426 N 426 (873)
T ss_pred C
Confidence 4
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.01 E-value=3e-10 Score=117.58 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=46.6
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (363)
.+++.|++..+.. ...+|..+.++++|++|+|++|.+... .....+++|++|+|.++.+.+. +..-+..+++|++|
T Consensus 164 ~~L~~L~L~~n~l-~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L 241 (968)
T PLN00113 164 SSLKVLDLGGNVL-VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE-IPYEIGGLTSLNHL 241 (968)
T ss_pred CCCCEEECccCcc-cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc-CChhHhcCCCCCEE
Confidence 4777777765542 224555566677777777776665432 2234566666666666655433 12224455666666
Q ss_pred EEeeeEe
Q 017981 194 SIKGYIY 200 (363)
Q Consensus 194 ~L~~c~~ 200 (363)
.+.+|..
T Consensus 242 ~L~~n~l 248 (968)
T PLN00113 242 DLVYNNL 248 (968)
T ss_pred ECcCcee
Confidence 6665543
No 6
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.97 E-value=4.3e-10 Score=70.10 Aligned_cols=36 Identities=28% Similarity=0.560 Sum_probs=31.3
Q ss_pred cCCCChHHHHHHhcCCChhHhhhhhhhccchhhhhc
Q 017981 11 ISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWT 46 (363)
Q Consensus 11 i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l~~ 46 (363)
|..||+|++.+||++|+.+|+++++.|||+|+++..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 578999999999999999999999999999997643
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.82 E-value=8e-10 Score=99.57 Aligned_cols=260 Identities=17% Similarity=0.073 Sum_probs=148.8
Q ss_pred cceEEEEecCCCChhhHHHHHHHH-HhCCceEEEEEcCCCc--c---ccCCcccccCCcccEEEecccccccC--CCccc
Q 017981 90 INKFSLRCCGLVDSSRLKLWVSFA-TMRNVREIEISLNDDE--C---IELPHCIYTCKTLEVLKLDMNFFIKT--PPTIF 161 (363)
Q Consensus 90 l~~l~l~~~~~~~~~~~~~wi~~~-~~~~l~~L~l~~~~~~--~---~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~ 161 (363)
++.+.+.... .....+....... ..++++++.+...... . ..++..+..+++|++|++++|.+... .....
T Consensus 25 L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 25 LQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred ccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 6777776553 2222222222221 1235888888654332 1 12233445688999999999887632 11122
Q ss_pred C---cccceeeeeeEEEccchHHH---HhccC-CccceEEEeeeEeCCCceeE-----EEecCCcceEEEEecCCccccC
Q 017981 162 F---PSAKILHVILNTIDNNFSDW---LFSKC-PALEDLSIKGYIYGTDSVTL-----NIPSLTLKRLRLELEAPEEDYI 229 (363)
Q Consensus 162 ~---~~L~~L~L~~~~~~~~~l~~---ll~~c-p~Le~L~L~~c~~~~~~~~l-----~i~~~~L~~L~l~~~~~~~~~~ 229 (363)
+ ++|++|++.++.+.+.++.. .+..+ ++|++|.+.+|.+.+. ... -..+++|++|++.+|.......
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA-SCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch-HHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 2 55999999999887654333 34556 8999999999875421 111 1123689999999886542100
Q ss_pred C-ceEEEEeccCcceEEEeecCCCce-------eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhh----ccCcc
Q 017981 230 T-KYKVIIRAPNLEQLYIRDHGPGLY-------VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLR----DIKNI 297 (363)
Q Consensus 230 ~-~~~~~~~~p~L~~L~l~~~~~~~~-------~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~----~l~~l 297 (363)
. ........++|++|+++++..... .+..+++|+.+.+..+.. .+ ..+..+.. ..+.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l-------~~---~~~~~l~~~~~~~~~~L 252 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL-------TD---AGAAALASALLSPNISL 252 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC-------ch---HHHHHHHHHHhccCCCc
Confidence 0 001112346899999998765321 245667888888765432 11 11222222 34788
Q ss_pred eEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCCh--HHHHHHHHhC-CCCcceEEeeecC
Q 017981 298 KSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGW--LSLAHIFSRM-PKLESIVFEEVRM 363 (363)
Q Consensus 298 ~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l~~ll~~~-p~L~~L~l~~~~~ 363 (363)
+.|.++++.+.+. ......+ .++.+++|+.++++++.-... ..+...++.- +.|++|.+..+.+
T Consensus 253 ~~L~l~~n~i~~~-~~~~l~~-~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 253 LTLSLSCNDITDD-GAKDLAE-VLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred eEEEccCCCCCcH-HHHHHHH-HHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 9999988765210 1111112 345567888888888765222 3344444544 7888888876653
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.81 E-value=6.9e-10 Score=100.01 Aligned_cols=238 Identities=15% Similarity=0.109 Sum_probs=152.7
Q ss_pred CCceEEEEEcCCCc---cccCCcccccCCcccEEEeccccccc--C------CCcccCcccceeeeeeEEEccc---hHH
Q 017981 116 RNVREIEISLNDDE---CIELPHCIYTCKTLEVLKLDMNFFIK--T------PPTIFFPSAKILHVILNTIDNN---FSD 181 (363)
Q Consensus 116 ~~l~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~~~~--~------~~~~~~~~L~~L~L~~~~~~~~---~l~ 181 (363)
.+++++.+..+... ...++..+...++|++|.++++.+.. . .....+++|+.|+|.++.+.+. .+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 46999999877642 22455556678889999999887652 1 1223577999999999988643 444
Q ss_pred HHhccCCccceEEEeeeEeCCCc-ee----EEEecCCcceEEEEecCCccccC-CceEEEEeccCcceEEEeecCCCce-
Q 017981 182 WLFSKCPALEDLSIKGYIYGTDS-VT----LNIPSLTLKRLRLELEAPEEDYI-TKYKVIIRAPNLEQLYIRDHGPGLY- 254 (363)
Q Consensus 182 ~ll~~cp~Le~L~L~~c~~~~~~-~~----l~i~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~p~L~~L~l~~~~~~~~- 254 (363)
.+... ++|++|.+.+|.+.+.. .. +....++|++|.+.+|....... ........+++|++|+++++.....
T Consensus 103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 55555 77999999998754210 01 11112789999999997652100 0111223457899999999866521
Q ss_pred ------eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCC-CCCCc
Q 017981 255 ------VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFP-TFPFL 327 (363)
Q Consensus 255 ------~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~-~~~~L 327 (363)
.+...+.|+.+.+..+.- .......+...+..+++|+.|+++++.... ..+....+ .++ ...+|
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i-------~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~-~~~~~l~~-~~~~~~~~L 252 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGL-------TDEGASALAETLASLKSLEVLNLGDNNLTD-AGAAALAS-ALLSPNISL 252 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCcc-------ChHHHHHHHHHhcccCCCCEEecCCCcCch-HHHHHHHH-HHhccCCCc
Confidence 123456899988875542 111223367778889999999999986621 11111111 111 24679
Q ss_pred ceEEEEeccCC--ChHHHHHHHHhCCCCcceEEeeecC
Q 017981 328 NRLEVEGVGAC--GWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 328 ~~L~l~~~~~~--~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
++|++.+|.-. ....+...+..+++|+.++++.+++
T Consensus 253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 99999998642 2234555666778899999988764
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.80 E-value=5.6e-10 Score=102.49 Aligned_cols=189 Identities=16% Similarity=0.132 Sum_probs=111.2
Q ss_pred ccCCccccc-CCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeE
Q 017981 131 IELPHCIYT-CKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL 207 (363)
Q Consensus 131 ~~l~~~~~~-~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l 207 (363)
..+|...|+ .++|+.|+|..|.+... ..+.++++|+.|.|..+.+..-+ +.++-+|.++|+|.|..|.....++.-
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~-DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD-DGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc-Ccceeeecccceeecccchhhhhhccc
Confidence 367776666 99999999999877644 34568888888888888654321 233567788888888877633221111
Q ss_pred EEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---------------------------eeecCC
Q 017981 208 NIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---------------------------VVHELH 260 (363)
Q Consensus 208 ~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---------------------------~~~~~~ 260 (363)
-..-.+|+.|++++|.+.... ..-...+++|+.|+++.+....+ .+..+.
T Consensus 289 lfgLt~L~~L~lS~NaI~rih---~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIH---IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS 365 (873)
T ss_pred ccccchhhhhccchhhhheee---cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence 122345555666555433210 01113345555555555433221 222334
Q ss_pred CceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC
Q 017981 261 SLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA 337 (363)
Q Consensus 261 ~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 337 (363)
+|.+++++-+.-.+ .+.+ ....+.++++|++|.+.++.+ +.+.+ + .+..+++|++|++..+..
T Consensus 366 sL~~LdLr~N~ls~-------~IED-aa~~f~gl~~LrkL~l~gNql---k~I~k--r-Afsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 366 SLHKLDLRSNELSW-------CIED-AAVAFNGLPSLRKLRLTGNQL---KSIPK--R-AFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhhhhcCcCCeEEE-------EEec-chhhhccchhhhheeecCcee---eecch--h-hhccCcccceecCCCCcc
Confidence 44444433221100 0011 455677899999999999988 77665 1 344788999999988753
No 10
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.73 E-value=1.8e-09 Score=95.43 Aligned_cols=165 Identities=15% Similarity=0.116 Sum_probs=87.3
Q ss_pred cCcccceeeeeeEEEccc-hHHHHhccCCccceEEEeeeE-eCCC-ceeEEEecCCcceEEEEecCCccccCCceEEEEe
Q 017981 161 FFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGYI-YGTD-SVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIR 237 (363)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~-~~~~-~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 237 (363)
++..|+.|+.+++...++ .+.++..+|++|+.|.+..|. +.+. ...+.-.++.|+.|.+.+|....+ .........
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d-~tL~sls~~ 370 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD-GTLASLSRN 370 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh-hhHhhhccC
Confidence 455555555555543333 555555555666666555555 1111 022233345555555555544333 223344455
Q ss_pred ccCcceEEEeecCCCceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcccccccccccc
Q 017981 238 APNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYAN 317 (363)
Q Consensus 238 ~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~ 317 (363)
+|.|+.+.++.+... ++-. -.++...-.++..++.|.+++++..+++. .
T Consensus 371 C~~lr~lslshce~i----------tD~g-----------------i~~l~~~~c~~~~l~~lEL~n~p~i~d~~----L 419 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELI----------TDEG-----------------IRHLSSSSCSLEGLEVLELDNCPLITDAT----L 419 (483)
T ss_pred CchhccCChhhhhhh----------hhhh-----------------hhhhhhccccccccceeeecCCCCchHHH----H
Confidence 555555555533210 0000 00011222234456777777776533222 2
Q ss_pred CCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEE
Q 017981 318 DHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVF 358 (363)
Q Consensus 318 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l 358 (363)
+ ....+++|+.+++..|..++-+++..+..++|+++..-+
T Consensus 420 e-~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 420 E-HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred H-HHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 2 344566888888888888888899999999999887644
No 11
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.1e-09 Score=97.10 Aligned_cols=205 Identities=19% Similarity=0.161 Sum_probs=119.1
Q ss_pred CCcccEEEecccccccCC---CcccCcccceeeeeeEEEccc-hHHHHhccCCccceEEEeeeEeCCC-ceeEEEecCCc
Q 017981 140 CKTLEVLKLDMNFFIKTP---PTIFFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGYIYGTD-SVTLNIPSLTL 214 (363)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~~~~~-~~~l~i~~~~L 214 (363)
..+|+...|.++...... ....||+++.|+|+.+=+... .+.++....|+||.|.|+.|.+... +.......++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 456666666666555322 233677777777777766555 6667777788888888887763221 02233345778
Q ss_pred ceEEEEecCCccccCCceEEEEeccCcceEEEeecCCC---ceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHh
Q 017981 215 KRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG---LYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDML 291 (363)
Q Consensus 215 ~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 291 (363)
|.|.++.|.... .....+....|+|+.|.+.++... ......+..|+++++....... |+ ..-..
T Consensus 200 K~L~l~~CGls~--k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~---~~-------~~~~~ 267 (505)
T KOG3207|consen 200 KQLVLNSCGLSW--KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID---FD-------QGYKV 267 (505)
T ss_pred heEEeccCCCCH--HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc---cc-------ccccc
Confidence 888888876542 123345566788888877776321 1112334556666665444321 11 23345
Q ss_pred hccCcceEEEEeCCcccccccccc----ccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeee
Q 017981 292 RDIKNIKSLSLSSGTMFALDRLDY----ANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEV 361 (363)
Q Consensus 292 ~~l~~l~~L~l~~~~~~~~~~l~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 361 (363)
..++.|+.|.++.+++ ..+.. ..+ ....|+.|+.|++..+.-.+|..+..+ +..++|+.|.+..+
T Consensus 268 ~~l~~L~~Lnls~tgi---~si~~~d~~s~~-kt~~f~kL~~L~i~~N~I~~w~sl~~l-~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGI---ASIAEPDVESLD-KTHTFPKLEYLNISENNIRDWRSLNHL-RTLENLKHLRITLN 336 (505)
T ss_pred ccccchhhhhccccCc---chhcCCCccchh-hhcccccceeeecccCccccccccchh-hccchhhhhhcccc
Confidence 5677777777777666 33322 111 234677788888877766566655544 44566666665443
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.60 E-value=5.5e-08 Score=101.76 Aligned_cols=77 Identities=12% Similarity=0.008 Sum_probs=35.1
Q ss_pred CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
.++.|.+.... ...+|..+ ...+|+.|+|.++.+...+ +...+++|+.|+|.++..... +.. ++.+++|++|.|
T Consensus 590 ~Lr~L~~~~~~--l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~-ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYP--LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE-IPD-LSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCC--CCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCc-CCc-cccCCcccEEEe
Confidence 45555554433 22344332 3456666666655544322 233455555555554432111 001 334455555555
Q ss_pred eee
Q 017981 196 KGY 198 (363)
Q Consensus 196 ~~c 198 (363)
.+|
T Consensus 665 ~~c 667 (1153)
T PLN03210 665 SDC 667 (1153)
T ss_pred cCC
Confidence 554
No 13
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.59 E-value=6.9e-09 Score=89.76 Aligned_cols=194 Identities=18% Similarity=0.163 Sum_probs=105.3
Q ss_pred ccCcccceeeeeeEEEccc---hHHHHhccCCccceEEEeeeEeCCCc-ee-----------EEEe-cCCcceEEEEecC
Q 017981 160 IFFPSAKILHVILNTIDNN---FSDWLFSKCPALEDLSIKGYIYGTDS-VT-----------LNIP-SLTLKRLRLELEA 223 (363)
Q Consensus 160 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~c~~~~~~-~~-----------l~i~-~~~L~~L~l~~~~ 223 (363)
..+|.|+.|+|+++.+... .+..++++|..|++|+|.+|..+... .. -.++ .+.|+.+....|.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 3566677777777766544 67788888999999999998632210 11 1122 2667777777765
Q ss_pred CccccCC-ceEEEEeccCcceEEEeecCCCc--e-----eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccC
Q 017981 224 PEEDYIT-KYKVIIRAPNLEQLYIRDHGPGL--Y-----VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIK 295 (363)
Q Consensus 224 ~~~~~~~-~~~~~~~~p~L~~L~l~~~~~~~--~-----~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 295 (363)
..+.... ........|.|+.+.+..+.... . .+..+|.|+.+++..+.. ...-+..+...+...+
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf-------t~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF-------TLEGSVALAKALSSWP 241 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh-------hhHHHHHHHHHhcccc
Confidence 4432111 11122344777777777554331 1 245667777776654442 2222334666666667
Q ss_pred cceEEEEeCCccccc--cccccccCCCCCCCCCcceEEEEeccCCCh--HHHHHHHHhCCCCcceEEeeecC
Q 017981 296 NIKSLSLSSGTMFAL--DRLDYANDHSFPTFPFLNRLEVEGVGACGW--LSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 296 ~l~~L~l~~~~~~~~--~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
+|+.|.++.+.+.+- ..+.+.+. -.+++|+.|++.++..... ..+..-...-|.|+.|.|++||+
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~---~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALK---ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hheeecccccccccccHHHHHHHHh---ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 777777776654110 11111111 1355677777777654111 12333344467777777777764
No 14
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.58 E-value=1.6e-08 Score=63.38 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=32.3
Q ss_pred ccCCCChHHHHHHhcCCChhHhhhhhhhccchhhhhccC
Q 017981 10 RISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSL 48 (363)
Q Consensus 10 ~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l~~~~ 48 (363)
.|.+||+|++.+||++|+.+|+++++.|||+|++++...
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 367899999999999999999999999999999876653
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.53 E-value=1e-07 Score=99.73 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=40.9
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEeccccccc-CC-CcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIK-TP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (363)
.+++.++++.+.. -..+| .+..+++|++|+|.+|.... .| ....+++|+.|++.+|..... +.. ..++++|+.|
T Consensus 634 ~~Lk~L~Ls~~~~-l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~-Lp~-~i~l~sL~~L 709 (1153)
T PLN03210 634 TGLRNIDLRGSKN-LKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI-LPT-GINLKSLYRL 709 (1153)
T ss_pred CCCCEEECCCCCC-cCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc-cCC-cCCCCCCCEE
Confidence 4677777755432 12334 24556777777777664321 22 234566677777766532211 000 0145566666
Q ss_pred EEeeeE
Q 017981 194 SIKGYI 199 (363)
Q Consensus 194 ~L~~c~ 199 (363)
.+.+|.
T Consensus 710 ~Lsgc~ 715 (1153)
T PLN03210 710 NLSGCS 715 (1153)
T ss_pred eCCCCC
Confidence 666553
No 16
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.45 E-value=1.2e-07 Score=57.05 Aligned_cols=34 Identities=38% Similarity=0.526 Sum_probs=31.6
Q ss_pred CChHHHHHHhcCCChhHhhhhhhhccchhhhhcc
Q 017981 14 LPNAILCHILSFLPTKYAVATCVLSSTWKLVWTS 47 (363)
Q Consensus 14 LPd~il~~Ils~L~~~d~~~~~~vskrWr~l~~~ 47 (363)
||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987654
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.6e-08 Score=89.99 Aligned_cols=157 Identities=18% Similarity=0.132 Sum_probs=103.8
Q ss_pred ccCCcccEEEecccccccCCC---cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEE-ecCC
Q 017981 138 YTCKTLEVLKLDMNFFIKTPP---TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLT 213 (363)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i-~~~~ 213 (363)
..+++|+.|+|+.|.+..+.+ ...++.|++|.|..|-++..++.+++..||+|+.|+|..|..... ....- ..++
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~-~~~~~~i~~~ 247 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI-KATSTKILQT 247 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce-ecchhhhhhH
Confidence 346778888888777764422 237889999999999988669999999999999999999852222 11111 1378
Q ss_pred cceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceee---------ecCCCceEEEEeeeeceeccCCCchhhH
Q 017981 214 LKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVV---------HELHSLTKAVVDYGIECILDYDSPEDVA 284 (363)
Q Consensus 214 L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~---------~~~~~L~~~~l~~~~~~~~~~~~~~~~~ 284 (363)
|++|+|.++...+.+ .....-..|+|+.|.++.+...++.+ ..+|+|+.+.+.-+.-.+
T Consensus 248 L~~LdLs~N~li~~~--~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~---------- 315 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFD--QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD---------- 315 (505)
T ss_pred HhhccccCCcccccc--cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc----------
Confidence 999999999776541 11234678999999999876654432 345677777665443210
Q ss_pred HHHHHHhhccCcceEEEEeCCcc
Q 017981 285 QAVVDMLRDIKNIKSLSLSSGTM 307 (363)
Q Consensus 285 ~~~~~~l~~l~~l~~L~l~~~~~ 307 (363)
-....-+..++++++|.+..+.+
T Consensus 316 w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 316 WRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ccccchhhccchhhhhhcccccc
Confidence 01334455566677776655433
No 18
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.45 E-value=3.4e-08 Score=85.52 Aligned_cols=216 Identities=15% Similarity=0.121 Sum_probs=140.4
Q ss_pred ccCCcccEEEecccccccC------CCcccCcccceeeeeeEEEc---cc------hHHHHhccCCccceEEEeeeEeCC
Q 017981 138 YTCKTLEVLKLDMNFFIKT------PPTIFFPSAKILHVILNTID---NN------FSDWLFSKCPALEDLSIKGYIYGT 202 (363)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~------~~~~~~~~L~~L~L~~~~~~---~~------~l~~ll~~cp~Le~L~L~~c~~~~ 202 (363)
-...++++++|+++.+... ....+-++|+.-++++.-.. ++ .+...+.+||.|++|+|++|.++.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3456778888888776632 22334556676666665211 11 344556799999999999997532
Q ss_pred Cc-e---eEEEecCCcceEEEEecCCccccCC----------ceEEEEeccCcceEEEeecCCCce-------eeecCCC
Q 017981 203 DS-V---TLNIPSLTLKRLRLELEAPEEDYIT----------KYKVIIRAPNLEQLYIRDHGPGLY-------VVHELHS 261 (363)
Q Consensus 203 ~~-~---~l~i~~~~L~~L~l~~~~~~~~~~~----------~~~~~~~~p~L~~L~l~~~~~~~~-------~~~~~~~ 261 (363)
-- + .+--++.+|+.|.+.+|..+-.... ..+..-+.|.|+.+....+..... .++..|.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 10 1 1112368999999999976432000 223446779999999998765422 3567789
Q ss_pred ceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCC---
Q 017981 262 LTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGAC--- 338 (363)
Q Consensus 262 L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~--- 338 (363)
|+.+.+..+.-. +... .....-+..+++|+.|+|..+++.. +.-....+ .+|.+++|++|++..|---
T Consensus 187 leevr~~qN~I~------~eG~-~al~eal~~~~~LevLdl~DNtft~-egs~~Lak-aL~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 187 LEEVRLSQNGIR------PEGV-TALAEALEHCPHLEVLDLRDNTFTL-EGSVALAK-ALSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred cceEEEeccccc------Cchh-HHHHHHHHhCCcceeeecccchhhh-HHHHHHHH-Hhcccchheeeccccccccccc
Confidence 999887655421 2222 3477788899999999999987621 11111123 6788999999999998531
Q ss_pred ChHHHHHHHHhCCCCcceEEeeec
Q 017981 339 GWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 339 ~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
.......+-+..|+|+.|.+.+|.
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcch
Confidence 123455566678999999988774
No 19
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=6e-09 Score=88.33 Aligned_cols=180 Identities=18% Similarity=0.165 Sum_probs=121.3
Q ss_pred ccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEe-cCCcceEEEEecCCccccCCceEEEEeccCcc
Q 017981 164 SAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLE 242 (363)
Q Consensus 164 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~ 242 (363)
.|++|+|+...++...+..+++.|..|+.|.|++...++. -...++ ...|+.|++..|...+. .....+..++..|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~-n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTE-NALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccch-hHHHHHHHhhhhHh
Confidence 5888888888887778888888888888888888776554 233333 37788888888865433 12223446777888
Q ss_pred eEEEeecCCCce----eeec-CCCceEEEEeeeeceeccCCCchhhHH-HHHHHhhccCcceEEEEeCCccccccccccc
Q 017981 243 QLYIRDHGPGLY----VVHE-LHSLTKAVVDYGIECILDYDSPEDVAQ-AVVDMLRDIKNIKSLSLSSGTMFALDRLDYA 316 (363)
Q Consensus 243 ~L~l~~~~~~~~----~~~~-~~~L~~~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~ 316 (363)
.|.++-|..... ++.+ -+.|+.+++...-. .... .+..+.+.++++.+|+++.+-+.+.. +
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr---------nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~----~ 330 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR---------NLQKSHLSTLVRRCPNLVHLDLSDSVMLKND----C 330 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh---------hhhhhHHHHHHHhCCceeeeccccccccCch----H
Confidence 888887654321 1222 24566665543321 1111 37788899999999999997553322 2
Q ss_pred cCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEee
Q 017981 317 NDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEE 360 (363)
Q Consensus 317 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~ 360 (363)
+. .+.+|+-|++|.++-|.....+.+. -+...|.|..|++.+
T Consensus 331 ~~-~~~kf~~L~~lSlsRCY~i~p~~~~-~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 331 FQ-EFFKFNYLQHLSLSRCYDIIPETLL-ELNSKPSLVYLDVFG 372 (419)
T ss_pred HH-HHHhcchheeeehhhhcCCChHHee-eeccCcceEEEEecc
Confidence 22 4567888999999999875554444 358889999998875
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.26 E-value=5.2e-08 Score=78.58 Aligned_cols=126 Identities=25% Similarity=0.206 Sum_probs=44.3
Q ss_pred CceEEEEEcCCCccccCCcccc-cCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 117 NVREIEISLNDDECIELPHCIY-TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
++++|+++....... . .+. .+.+|+.|+|++|.+....+...+++|++|++.++.+++-+ ..+...||+|++|++
T Consensus 20 ~~~~L~L~~n~I~~I--e-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--E-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-
T ss_pred ccccccccccccccc--c-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEEC
Confidence 567777776654222 1 233 46889999999999887778888999999999999886531 223356899999999
Q ss_pred eeeEeCCCceeEE-E-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEe
Q 017981 196 KGYIYGTDSVTLN-I-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIR 247 (363)
Q Consensus 196 ~~c~~~~~~~~l~-i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 247 (363)
.+|..... ..+. . ..|+|+.|.+.+|.+......-..+...+|+|+.|+..
T Consensus 96 ~~N~I~~l-~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNKISDL-NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS---SC-CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCcCCCh-HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 99886554 2221 1 23777777777765543311112223445666665433
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.20 E-value=2.2e-08 Score=93.09 Aligned_cols=206 Identities=17% Similarity=0.196 Sum_probs=109.2
Q ss_pred cccCCcccccCCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEE
Q 017981 130 CIELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLN 208 (363)
Q Consensus 130 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~ 208 (363)
...+|..+|++..|+.|+|+.+.+...| +...-+++-.|+|+++.+.+- -..++.+..-|-.|+|+.+..+.+ ..-.
T Consensus 92 nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetI-Pn~lfinLtDLLfLDLS~NrLe~L-PPQ~ 169 (1255)
T KOG0444|consen 92 NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETI-PNSLFINLTDLLFLDLSNNRLEML-PPQI 169 (1255)
T ss_pred cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccC-CchHHHhhHhHhhhccccchhhhc-CHHH
Confidence 3456667777777777777777666543 333556666777776665332 133444455555666666654443 1111
Q ss_pred EecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCC----ceeeecCCCceEEEEeeeeceeccCCCchhhH
Q 017981 209 IPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG----LYVVHELHSLTKAVVDYGIECILDYDSPEDVA 284 (363)
Q Consensus 209 i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~ 284 (363)
-+-..|++|.++++-..-. ...-.-++.+|+.|++++..-. ...+..+.+|.+++++-+...
T Consensus 170 RRL~~LqtL~Ls~NPL~hf---QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp----------- 235 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNHF---QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP----------- 235 (1255)
T ss_pred HHHhhhhhhhcCCChhhHH---HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-----------
Confidence 1124566666666532110 0111233444555555553211 223344455555554433221
Q ss_pred HHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981 285 QAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 285 ~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
.+...+-.+++|+.|.++++.+ .-+..+ .....+|++|+++.+. ...++.-+-..|.|+.|.+..|+
T Consensus 236 -~vPecly~l~~LrrLNLS~N~i---teL~~~----~~~W~~lEtLNlSrNQ---Lt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 236 -IVPECLYKLRNLRRLNLSGNKI---TELNMT----EGEWENLETLNLSRNQ---LTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred -cchHHHhhhhhhheeccCcCce---eeeecc----HHHHhhhhhhccccch---hccchHHHhhhHHHHHHHhccCc
Confidence 1566677778888888888766 433332 2245567777777653 33455555556666666665554
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.15 E-value=4.6e-06 Score=82.37 Aligned_cols=35 Identities=14% Similarity=0.046 Sum_probs=22.4
Q ss_pred CcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981 326 FLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 326 ~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
+|+.|++..+.- ..++.-+.++++|+.|+++.|++
T Consensus 423 ~L~~L~Ls~NqL---t~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 423 GLLSLSVYRNQL---TRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hhhhhhhccCcc---cccChHHhhccCCCeEECCCCCC
Confidence 455555554432 23444566788999999988864
No 23
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.13 E-value=7.5e-08 Score=91.85 Aligned_cols=132 Identities=20% Similarity=0.166 Sum_probs=77.5
Q ss_pred hCCceEEEEEcCCC-ccccCCcccccCCcccEEEeccc-ccccC------CCcccCcccceeeeeeEE-EccchHHHHhc
Q 017981 115 MRNVREIEISLNDD-ECIELPHCIYTCKTLEVLKLDMN-FFIKT------PPTIFFPSAKILHVILNT-IDNNFSDWLFS 185 (363)
Q Consensus 115 ~~~l~~L~l~~~~~-~~~~l~~~~~~~~~L~~L~L~~~-~~~~~------~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~ 185 (363)
.+.++++.+..+.. ....+-.....|++|+.|.++++ ..... .....+++|+.|++.++. +++.++..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 35777777765432 11123445556888888888763 22211 122356788888888887 55557777777
Q ss_pred cCCccceEEEeeeE-e--CCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEee
Q 017981 186 KCPALEDLSIKGYI-Y--GTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRD 248 (363)
Q Consensus 186 ~cp~Le~L~L~~c~-~--~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 248 (363)
.||+||+|.+..|. . .++ ..+.-.++.|++|++.+|....+ .....+...+|+|+.|.+.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl-~~i~~~~~~L~~L~l~~c~~~~d-~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGL-VSIAERCPSLRELDLSGCHGLTD-SGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hCCCcceEccCCCCccchhHH-HHHHHhcCcccEEeeecCccchH-HHHHHHHHhCcchhhhhhhh
Confidence 78888888877776 2 222 23333457788888888765432 11222234456665555443
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.10 E-value=7.8e-08 Score=93.10 Aligned_cols=208 Identities=19% Similarity=0.216 Sum_probs=122.6
Q ss_pred hhHHHHHHHHHhCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcc-cCcccceeeeeeEEEccc--hH
Q 017981 104 SRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTI-FFPSAKILHVILNTIDNN--FS 180 (363)
Q Consensus 104 ~~~~~wi~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~--~l 180 (363)
..+..|+..+ .+++-+....... ..+|..++...+|++|....|.+...+.+. .++.|++|+|..+.+..- .+
T Consensus 254 ~~lp~wi~~~--~nle~l~~n~N~l--~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~ 329 (1081)
T KOG0618|consen 254 SNLPEWIGAC--ANLEALNANHNRL--VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNF 329 (1081)
T ss_pred hcchHHHHhc--ccceEecccchhH--HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHH
Confidence 4455787764 4788877765443 567777888888999988888887655554 599999999999876543 11
Q ss_pred HHHh----------------------ccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEec
Q 017981 181 DWLF----------------------SKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRA 238 (363)
Q Consensus 181 ~~ll----------------------~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 238 (363)
.+++ ...+.|+.|++.+|.+.+....+-...++||.|++.+|...+. ........
T Consensus 330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f---pas~~~kl 406 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF---PASKLRKL 406 (1081)
T ss_pred HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC---CHHHHhch
Confidence 1111 0234566666666654432011112236777777777754322 11223455
Q ss_pred cCcceEEEeecCCCce--eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccc
Q 017981 239 PNLEQLYIRDHGPGLY--VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYA 316 (363)
Q Consensus 239 p~L~~L~l~~~~~~~~--~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~ 316 (363)
+.||.|.++|+..... .+.++++|..+....+... .+--+.+++.|+.++++.+.+ +.+.-
T Consensus 407 e~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-------------~fPe~~~l~qL~~lDlS~N~L---~~~~l- 469 (1081)
T KOG0618|consen 407 EELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-------------SFPELAQLPQLKVLDLSCNNL---SEVTL- 469 (1081)
T ss_pred HHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-------------echhhhhcCcceEEecccchh---hhhhh-
Confidence 6677777777654322 2444555555443322211 122467788888888888766 33222
Q ss_pred cCCCCCCCCCcceEEEEeccC
Q 017981 317 NDHSFPTFPFLNRLEVEGVGA 337 (363)
Q Consensus 317 ~~~~~~~~~~L~~L~l~~~~~ 337 (363)
.+ ..|. ++|+.|+++++..
T Consensus 470 ~~-~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 470 PE-ALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred hh-hCCC-cccceeeccCCcc
Confidence 11 2333 6788888888764
No 25
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.08 E-value=5.9e-08 Score=90.31 Aligned_cols=222 Identities=15% Similarity=0.100 Sum_probs=120.0
Q ss_pred CceEEEEEcCCCccccCCcccccCCcccEEEeccccccc---CCCcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIK---TPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (363)
++++|++.-... ..+--.+...+.|+++.++.+.+.. ++....+..|+.|+|+++....- -.=+....++-.|
T Consensus 56 kLEHLs~~HN~L--~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev--P~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 56 KLEHLSMAHNQL--ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV--PTNLEYAKNSIVL 131 (1255)
T ss_pred hhhhhhhhhhhh--HhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhc--chhhhhhcCcEEE
Confidence 566666532221 1222344455666666666665542 13344667777777777765432 1113345667777
Q ss_pred EEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCceEEEEeeeece
Q 017981 194 SIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIEC 273 (363)
Q Consensus 194 ~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~ 273 (363)
.|+++..+.+...+.|.-..|-.|+++++..... ..-......|++|.++++...-+.+..+|+++.+.+--...
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~L----PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~- 206 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEML----PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN- 206 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhc----CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc-
Confidence 7777776666444555556777777777754322 11223455677788887766656666666666554311111
Q ss_pred eccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCC
Q 017981 274 ILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKL 353 (363)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L 353 (363)
.+.--.++..-+..+.+|..++++.+.+ -.+.++ +-.+++|+.|+++++........ ...--+|
T Consensus 207 ------TqRTl~N~Ptsld~l~NL~dvDlS~N~L---p~vPec----ly~l~~LrrLNLS~N~iteL~~~---~~~W~~l 270 (1255)
T KOG0444|consen 207 ------TQRTLDNIPTSLDDLHNLRDVDLSENNL---PIVPEC----LYKLRNLRRLNLSGNKITELNMT---EGEWENL 270 (1255)
T ss_pred ------ccchhhcCCCchhhhhhhhhccccccCC---CcchHH----HhhhhhhheeccCcCceeeeecc---HHHHhhh
Confidence 1111122444466677777777777655 333222 22456788888887653221111 1112356
Q ss_pred cceEEeeecC
Q 017981 354 ESIVFEEVRM 363 (363)
Q Consensus 354 ~~L~l~~~~~ 363 (363)
++|.++-|++
T Consensus 271 EtLNlSrNQL 280 (1255)
T KOG0444|consen 271 ETLNLSRNQL 280 (1255)
T ss_pred hhhccccchh
Confidence 7777666653
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.04 E-value=4.2e-06 Score=82.84 Aligned_cols=213 Identities=14% Similarity=0.089 Sum_probs=101.3
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
.+++.|.+..+.. ..+|..++ ++|+.|++++|.+...|. .-.++|+.|+|.+|.+..- ..-+ ..+|+.|.+
T Consensus 199 ~~L~~L~Ls~N~L--tsLP~~l~--~nL~~L~Ls~N~LtsLP~-~l~~~L~~L~Ls~N~L~~L--P~~l--~s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNEL--KSLPENLQ--GNIKTLYANSNQLTSIPA-TLPDTIQEMELSINRITEL--PERL--PSALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCC--CcCChhhc--cCCCEEECCCCccccCCh-hhhccccEEECcCCccCcC--ChhH--hCCCCEEEC
Confidence 4677777766543 24555433 578888888877664332 1234677777777765421 1111 235666666
Q ss_pred eeeEeCCCceeEEEecCCcceEEEEecCCccccCCc--------------eEE-EEeccCcceEEEeecCCCceeeecCC
Q 017981 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITK--------------YKV-IIRAPNLEQLYIRDHGPGLYVVHELH 260 (363)
Q Consensus 196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~--------------~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~ 260 (363)
.+|.+..+... + .++|+.|++.+|......... ..+ ....++|+.|.++++....+...-.+
T Consensus 270 s~N~L~~LP~~--l-~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~ 346 (754)
T PRK15370 270 FHNKISCLPEN--L-PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPP 346 (754)
T ss_pred cCCccCccccc--c-CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhcC
Confidence 66554332110 1 245666666666432210000 000 00113444444444433222111123
Q ss_pred CceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCCh
Q 017981 261 SLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGW 340 (363)
Q Consensus 261 ~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 340 (363)
+|+.+.+..+.-. . +...+ .++|+.|+++++.+ ..+.. .+ ..+|+.|+++.+.-...
T Consensus 347 sL~~L~Ls~N~L~--------~----LP~~l--p~~L~~LdLs~N~L---t~LP~----~l--~~sL~~LdLs~N~L~~L 403 (754)
T PRK15370 347 ELQVLDVSKNQIT--------V----LPETL--PPTITTLDVSRNAL---TNLPE----NL--PAALQIMQASRNNLVRL 403 (754)
T ss_pred cccEEECCCCCCC--------c----CChhh--cCCcCEEECCCCcC---CCCCH----hH--HHHHHHHhhccCCcccC
Confidence 4444444322110 0 00000 13566666666554 22111 11 12466677766543222
Q ss_pred -HHHHHHHHhCCCCcceEEeeecC
Q 017981 341 -LSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 341 -~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
..+..+...+|++..|.+..|.+
T Consensus 404 P~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 404 PESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred chhHHHHhhcCCCccEEEeeCCCc
Confidence 34666777788888888887754
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.02 E-value=1.2e-07 Score=76.44 Aligned_cols=107 Identities=17% Similarity=0.091 Sum_probs=28.7
Q ss_pred ccCCcccEEEecccccccCCCcc-cCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcce
Q 017981 138 YTCKTLEVLKLDMNFFIKTPPTI-FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR 216 (363)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~ 216 (363)
.++.++++|+|.++.+....... .+.+|+.|+|++|.+..= .. +..++.|++|.+.+|....+...+.-..|+|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCCCccc--cC-ccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 45667888999998888554444 578888888888877643 21 456788888888888755441111112477777
Q ss_pred EEEEecCCccccCCceEEEEeccCcceEEEeec
Q 017981 217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDH 249 (363)
Q Consensus 217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 249 (363)
|.+.+|...+. .... ....+|+|+.|++.|+
T Consensus 93 L~L~~N~I~~l-~~l~-~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 93 LYLSNNKISDL-NELE-PLSSLPKLRVLSLEGN 123 (175)
T ss_dssp EE-TTS---SC-CCCG-GGGG-TT--EEE-TT-
T ss_pred EECcCCcCCCh-HHhH-HHHcCCCcceeeccCC
Confidence 77777765432 1111 1123455555555554
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.01 E-value=1.3e-05 Score=79.31 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=64.7
Q ss_pred CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEe
Q 017981 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK 196 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~ 196 (363)
+-..|++..... ..+|..+. ++|+.|.+..|.+...|. ..++|++|+|.+|.++.- . ...++|++|.+.
T Consensus 202 ~~~~LdLs~~~L--tsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsL--P---~lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGL--TTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSL--P---VLPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCC--CcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcc--c---Ccccccceeecc
Confidence 455566654443 35666543 478888888877765442 357788888888766532 1 124677777777
Q ss_pred eeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981 197 GYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP 251 (363)
Q Consensus 197 ~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 251 (363)
.|.+..+ .. ..++|+.|.+.+|.... +....|+|+.|+++++..
T Consensus 271 ~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~-------LP~~p~~L~~LdLS~N~L 314 (788)
T PRK15387 271 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-------LPVLPPGLQELSVSDNQL 314 (788)
T ss_pred CCchhhh-hh---chhhcCEEECcCCcccc-------ccccccccceeECCCCcc
Confidence 7654333 11 12456667666664421 112235677777766544
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.99 E-value=9.6e-07 Score=75.33 Aligned_cols=206 Identities=17% Similarity=0.122 Sum_probs=127.6
Q ss_pred cccCCcccccCCcccEEEecccccccC----------CCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeE
Q 017981 130 CIELPHCIYTCKTLEVLKLDMNFFIKT----------PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI 199 (363)
Q Consensus 130 ~~~l~~~~~~~~~L~~L~L~~~~~~~~----------~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~ 199 (363)
.+.+...+..|..|++|..++..-+-. .....|.+|+++.++.|.- .++..+...=|.|+.+.+.+..
T Consensus 171 k~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~s~ 248 (490)
T KOG1259|consen 171 KYDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHNTT 248 (490)
T ss_pred ccchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch--hheeceeecCchhheeeeeccc
Confidence 345555566688999999887543311 1223688999999988853 3555556667889988887653
Q ss_pred eCCC----------------------ceeEEEec-CCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-e
Q 017981 200 YGTD----------------------SVTLNIPS-LTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-V 255 (363)
Q Consensus 200 ~~~~----------------------~~~l~i~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~ 255 (363)
.... +....+.+ +.|.+|++++|.+... ..-+.-+|.++.|.++.+....+ .
T Consensus 249 ~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~i----DESvKL~Pkir~L~lS~N~i~~v~n 324 (490)
T KOG1259|consen 249 IQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQI----DESVKLAPKLRRLILSQNRIRTVQN 324 (490)
T ss_pred ccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhh----hhhhhhccceeEEeccccceeeehh
Confidence 1110 01112222 5688999998865422 12234579999999998765432 2
Q ss_pred eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEec
Q 017981 256 VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGV 335 (363)
Q Consensus 256 ~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~ 335 (363)
+..+++|+.++++.+.. ..+..+=..+.|+++|.+..+.+ +.++ .+..+..|..|++.++
T Consensus 325 La~L~~L~~LDLS~N~L------------s~~~Gwh~KLGNIKtL~La~N~i---E~LS-----GL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLL------------AECVGWHLKLGNIKTLKLAQNKI---ETLS-----GLRKLYSLVNLDLSSN 384 (490)
T ss_pred hhhcccceEeecccchh------------HhhhhhHhhhcCEeeeehhhhhH---hhhh-----hhHhhhhheecccccc
Confidence 56788899888875543 12455555677888888877766 5443 2334555777777776
Q ss_pred cCCChHHHHHHHHhCCCCcceEEeeec
Q 017981 336 GACGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 336 ~~~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
...+.+.+.+| .+.|.|+.+.+..|.
T Consensus 385 ~Ie~ldeV~~I-G~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 385 QIEELDEVNHI-GNLPCLETLRLTGNP 410 (490)
T ss_pred chhhHHHhccc-ccccHHHHHhhcCCC
Confidence 55444444443 566777777665543
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.92 E-value=1.3e-05 Score=79.35 Aligned_cols=119 Identities=16% Similarity=0.097 Sum_probs=77.5
Q ss_pred CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEe
Q 017981 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK 196 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~ 196 (363)
+..++++..... ..+|..+ .++|+.|+|++|.+...|. ..+++|++|+|.++.++.- ..- -.++|+.|.|.
T Consensus 179 ~~~~L~L~~~~L--tsLP~~I--p~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~N~LtsL--P~~--l~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGL--TTIPACI--PEQITTLILDNNELKSLPE-NLQGNIKTLYANSNQLTSI--PAT--LPDTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCc--CcCCccc--ccCCcEEEecCCCCCcCCh-hhccCCCEEECCCCccccC--Chh--hhccccEEECc
Confidence 566677654432 3556543 3579999999998885543 2347999999999977532 111 13589999999
Q ss_pred eeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCc
Q 017981 197 GYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL 253 (363)
Q Consensus 197 ~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~ 253 (363)
+|....+... + .++|+.|++++|..... .. .-.++|+.|.++++....
T Consensus 250 ~N~L~~LP~~--l-~s~L~~L~Ls~N~L~~L----P~--~l~~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 250 INRITELPER--L-PSALQSLDLFHNKISCL----PE--NLPEELRYLSVYDNSIRT 297 (754)
T ss_pred CCccCcCChh--H-hCCCCEEECcCCccCcc----cc--ccCCCCcEEECCCCcccc
Confidence 9876544111 1 25899999998765421 00 112589999999876543
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=9.3e-06 Score=69.35 Aligned_cols=202 Identities=17% Similarity=0.188 Sum_probs=129.1
Q ss_pred cccEEEecccccccCC---C-cccCcccceeeeeeEEEccc-hHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcce
Q 017981 142 TLEVLKLDMNFFIKTP---P-TIFFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR 216 (363)
Q Consensus 142 ~L~~L~L~~~~~~~~~---~-~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~ 216 (363)
-+.-|.+.+|.+...- . ...+..++.|+|.++.+.+. .+..++.+.|.|+.|.|..|.....-..+-.+..+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 4445566666665321 1 12578899999999999888 88999999999999999998743320223355689999
Q ss_pred EEEEecCCccccCCceEEEEeccCcceEEEeecCCCceee-----ec-CCCceEEEEeeeeceeccCCCchhhHHHHHHH
Q 017981 217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVV-----HE-LHSLTKAVVDYGIECILDYDSPEDVAQAVVDM 290 (363)
Q Consensus 217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~-----~~-~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 290 (363)
|.+++....- ..........|.++.|+++++....+-+ +. -+.+.. ++..+. +.....+..++
T Consensus 126 lVLNgT~L~w--~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~t--lh~~~c-------~~~~w~~~~~l 194 (418)
T KOG2982|consen 126 LVLNGTGLSW--TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLT--LHQLPC-------LEQLWLNKNKL 194 (418)
T ss_pred EEEcCCCCCh--hhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhh--hhcCCc-------HHHHHHHHHhH
Confidence 9999875321 1122344667888888888764322211 10 011111 111111 33344457788
Q ss_pred hhccCcceEEEEeCCcccccccccc--ccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981 291 LRDIKNIKSLSLSSGTMFALDRLDY--ANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 291 l~~l~~l~~L~l~~~~~~~~~~l~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
-+.+|++..+.++.+++ +..+. ..+ ++|.++ -|+++.....+|+++.. |..+|.|..|.+..+.
T Consensus 195 ~r~Fpnv~sv~v~e~Pl---K~~s~ek~se-~~p~~~---~LnL~~~~idswasvD~-Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGPL---KTESSEKGSE-PFPSLS---CLNLGANNIDSWASVDA-LNGFPQLVDLRVSENP 260 (418)
T ss_pred HhhcccchheeeecCcc---cchhhcccCC-CCCcch---hhhhcccccccHHHHHH-HcCCchhheeeccCCc
Confidence 88899999999999987 66554 344 444444 56677666567777664 4678888888776543
No 32
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.84 E-value=4.2e-07 Score=71.22 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=42.3
Q ss_pred ccccCCcccEEEecccccccC-CCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeE
Q 017981 136 CIYTCKTLEVLKLDMNFFIKT-PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI 199 (363)
Q Consensus 136 ~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~ 199 (363)
.+++..+.+.|.|+-+.+... |..+.+.+|+.|++.++.+.+- -.-++..|.|+.|.+..+.
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~l--p~~issl~klr~lnvgmnr 90 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEEL--PTSISSLPKLRILNVGMNR 90 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhc--Chhhhhchhhhheecchhh
Confidence 456777788888887777644 5556778888888887776443 2225667777777776654
No 33
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.81 E-value=3.4e-07 Score=87.35 Aligned_cols=111 Identities=21% Similarity=0.164 Sum_probs=56.8
Q ss_pred CCcccEEEecccccccC----CCcccCcccceeeeeeE-E-Eccc--hHHHHhccCCccceEEEeeeE-eCCC-ceeEEE
Q 017981 140 CKTLEVLKLDMNFFIKT----PPTIFFPSAKILHVILN-T-IDNN--FSDWLFSKCPALEDLSIKGYI-YGTD-SVTLNI 209 (363)
Q Consensus 140 ~~~L~~L~L~~~~~~~~----~~~~~~~~L~~L~L~~~-~-~~~~--~l~~ll~~cp~Le~L~L~~c~-~~~~-~~~l~i 209 (363)
++.|+.|.+.+|..... +....+++|+.|++.++ . +... ....+...|+.|++|.+..|. ..+. -..+.-
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 66666666666644322 22335666777776652 1 1111 233455666777777766665 2111 012222
Q ss_pred ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981 210 PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP 251 (363)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 251 (363)
.|+.|+.|.+.+|...++ .+...+...+|.|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~-~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTD-EGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccch-hHHHHHHHhcCcccEEeeecCcc
Confidence 356677776655553222 23334445566677776666543
No 34
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.76 E-value=1.1e-06 Score=77.81 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=26.8
Q ss_pred CCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981 325 PFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 325 ~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
.+|+.|++..+ +...++.++++|.+|++|.+.+|.|
T Consensus 505 ~nL~tLDL~nN---dlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 505 RNLTTLDLQNN---DLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhcceeccCCC---chhhCChhhccccceeEEEecCCcc
Confidence 34455555443 5667899999999999999998864
No 35
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=1.9e-05 Score=77.63 Aligned_cols=61 Identities=21% Similarity=0.221 Sum_probs=42.2
Q ss_pred CcccEEEeccccccc-CC---CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeC
Q 017981 141 KTLEVLKLDMNFFIK-TP---PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYG 201 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~-~~---~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~ 201 (363)
.+|++|+++|...-. .+ -..-||+|++|.+.+..+..+++..+..++|+|..|+++++...
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence 567777777643321 11 12358888888888888877778888888888888888876543
No 36
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.60 E-value=2.2e-06 Score=83.31 Aligned_cols=185 Identities=15% Similarity=0.141 Sum_probs=105.9
Q ss_pred cCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEe-cCCcceEEEEecCCccccCCceEEEEecc
Q 017981 161 FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAP 239 (363)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~p 239 (363)
.-.+|++++++++.+.. +-.++..|++|+.+.+..+.+-.. ..++. ..+|++|.+..|.... .........
T Consensus 239 ~p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l~~l--p~ri~~~~~L~~l~~~~nel~y----ip~~le~~~ 310 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRLVAL--PLRISRITSLVSLSAAYNELEY----IPPFLEGLK 310 (1081)
T ss_pred ccccceeeecchhhhhc--chHHHHhcccceEecccchhHHhh--HHHHhhhhhHHHHHhhhhhhhh----CCCcccccc
Confidence 34578888888887754 447788899999999988775222 12222 3677777777775432 122223345
Q ss_pred CcceEEEeecCCCceee---ecCCC-ceEEE---Eeeeeceec----------cCCCchhhHHHHHHHhhccCcceEEEE
Q 017981 240 NLEQLYIRDHGPGLYVV---HELHS-LTKAV---VDYGIECIL----------DYDSPEDVAQAVVDMLRDIKNIKSLSL 302 (363)
Q Consensus 240 ~L~~L~l~~~~~~~~~~---~~~~~-L~~~~---l~~~~~~~~----------~~~~~~~~~~~~~~~l~~l~~l~~L~l 302 (363)
.|++|++..+......- ..++. |..+. ........+ -|...+...+..+..+.++.+||.|++
T Consensus 311 sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 311 SLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL 390 (1081)
T ss_pred eeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence 67777777654332210 00000 10000 000000011 133355566678999999999999999
Q ss_pred eCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981 303 SSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
+.+.+ ..+... .+..++.|++|.++++.- ..++.=+.+|+.|++|..+.|+
T Consensus 391 syNrL---~~fpas---~~~kle~LeeL~LSGNkL---~~Lp~tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 391 SYNRL---NSFPAS---KLRKLEELEELNLSGNKL---TTLPDTVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred ccccc---ccCCHH---HHhchHHhHHHhcccchh---hhhhHHHHhhhhhHHHhhcCCc
Confidence 99877 433221 223677788999998743 3344445555555555555444
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.34 E-value=8.2e-05 Score=48.96 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=38.6
Q ss_pred CcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeE
Q 017981 141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI 199 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~ 199 (363)
++|++|.+++|.+...+ .+.++++|++|++.++.+..-. ...+.++|+|++|.+.+|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence 46777888877666432 3456778888888877664321 2346778888888887753
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.29 E-value=7.9e-05 Score=66.21 Aligned_cols=225 Identities=18% Similarity=0.118 Sum_probs=120.2
Q ss_pred CceEEEEEcCCCccccCCccccc-CCcccEEEecccccccC--CCcccCcccceeeeee-EEEccc---hH---------
Q 017981 117 NVREIEISLNDDECIELPHCIYT-CKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVIL-NTIDNN---FS--------- 180 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~-~~~~~~---~l--------- 180 (363)
...++.|+-... ..+|+..|+ .++|+.|+|+.|.+... ..+.++++|.+|.+.+ +.+++- .+
T Consensus 68 ~tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCc--ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 566667765553 467876655 89999999999877642 3355788888887777 665532 11
Q ss_pred -----------HHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCcccc---------------CCceEE
Q 017981 181 -----------DWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDY---------------ITKYKV 234 (363)
Q Consensus 181 -----------~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~---------------~~~~~~ 234 (363)
+..+...|+|..|.+-++....+.+.....-..++.+++.-+.+..+. .+....
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 223445677777777776533331111111245555555544311100 000000
Q ss_pred ------------EEecc----CcceE--EEeecC-CC----ceeeecCCCceEEEEeeeecee--c-----------cCC
Q 017981 235 ------------IIRAP----NLEQL--YIRDHG-PG----LYVVHELHSLTKAVVDYGIECI--L-----------DYD 278 (363)
Q Consensus 235 ------------~~~~p----~L~~L--~l~~~~-~~----~~~~~~~~~L~~~~l~~~~~~~--~-----------~~~ 278 (363)
.+++. .++.+ .+++.. .. ...+..+|+|+.++++.+.-.. . -|.
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 00000 01111 111111 11 1124555666666555443211 1 133
Q ss_pred CchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC---CChHHHHHHHHh
Q 017981 279 SPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA---CGWLSLAHIFSR 349 (363)
Q Consensus 279 ~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~l~~ll~~ 349 (363)
+.+.+..--..++.++++|+.|++.++.+ ..+... .+..+..|.+|++..++. +...++..-++.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~i---t~~~~~---aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQI---TTVAPG---AFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCee---EEEecc---cccccceeeeeehccCcccCccchHHHHHHHhh
Confidence 45555555788899999999999999887 555441 222455578888876543 344666666654
No 39
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.28 E-value=0.00013 Score=61.74 Aligned_cols=177 Identities=15% Similarity=0.091 Sum_probs=96.8
Q ss_pred ccCcccceeeeeeEEEccc---hHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEE
Q 017981 160 IFFPSAKILHVILNTIDNN---FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVII 236 (363)
Q Consensus 160 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~ 236 (363)
..||.|+..+|+++.|... -+..+++.-..|++|.|.+|..+.. ..-+| ...|..|.. .+-+.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~-aG~ri-gkal~~la~------------nKKaa 154 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI-AGGRI-GKALFHLAY------------NKKAA 154 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc-chhHH-HHHHHHHHH------------Hhhhc
Confidence 3566666666666655543 5566677777788888887763322 11111 122222211 12335
Q ss_pred eccCcceEEEeecCCCce-------eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccc-
Q 017981 237 RAPNLEQLYIRDHGPGLY-------VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMF- 308 (363)
Q Consensus 237 ~~p~L~~L~l~~~~~~~~-------~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~- 308 (363)
+.|.|+.+....+..... .++.-..|..+.+..+.-. |.....-.+--+.-+.+|+.|+|..+.+.
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIr------pegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIR------PEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcC------cchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 678888888776644321 1222345677766544321 33322223333455778999999887652
Q ss_pred -cccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHH-----hCCCCcceEEeee
Q 017981 309 -ALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFS-----RMPKLESIVFEEV 361 (363)
Q Consensus 309 -~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~-----~~p~L~~L~l~~~ 361 (363)
...++.+ ..+..++|++|++..|-. ...+...+++ ..|+|..|-.+-|
T Consensus 229 ~gS~~La~----al~~W~~lrEL~lnDCll-s~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 229 EGSRYLAD----ALCEWNLLRELRLNDCLL-SNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred hhHHHHHH----Hhcccchhhhccccchhh-ccccHHHHHHHhhhhcCCCccccccchh
Confidence 1112222 456777789999988854 3344444444 3577777655543
No 40
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.25 E-value=2.4e-05 Score=65.72 Aligned_cols=131 Identities=21% Similarity=0.067 Sum_probs=86.8
Q ss_pred CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeE--EEccchHHHHhccCCccceEE
Q 017981 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILN--TIDNNFSDWLFSKCPALEDLS 194 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~ 194 (363)
.++++.+..+....-.+....-....|..|++.++.+.+..++-.+|+|+.|.++.+ ++.. ++.-++..||+|++|.
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ 97 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLN 97 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEe
Confidence 344555544332223345444557788888899888887777778899999999999 4443 5677788899999999
Q ss_pred EeeeEeCCCceeEEEe--cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeec
Q 017981 195 IKGYIYGTDSVTLNIP--SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDH 249 (363)
Q Consensus 195 L~~c~~~~~~~~l~i~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 249 (363)
+..|....+ ..+.-. -++|++|.+.+|........-.++..-+|+|.+|+..+.
T Consensus 98 ls~Nki~~l-stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 98 LSGNKIKDL-STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred ecCCccccc-cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 999875544 222221 267889999998754321222233345678888765543
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.09 E-value=5.4e-05 Score=74.44 Aligned_cols=137 Identities=18% Similarity=0.150 Sum_probs=84.8
Q ss_pred HHhCCceEEEEEcCCCccccCCccccc-CCcccEEEecccccccC---CCcccCcccceeeeeeEEEccchHHHHhccCC
Q 017981 113 ATMRNVREIEISLNDDECIELPHCIYT-CKTLEVLKLDMNFFIKT---PPTIFFPSAKILHVILNTIDNNFSDWLFSKCP 188 (363)
Q Consensus 113 ~~~~~l~~L~l~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp 188 (363)
..+.++++|+++.........|..++. +|+|++|.+++-.+... .-..+||||..||++++.+++- .-++..+
T Consensus 119 ~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lk 195 (699)
T KOG3665|consen 119 ESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLK 195 (699)
T ss_pred HHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccc
Confidence 344588888887755434445555555 88899999888766533 1234789999999988887654 2256678
Q ss_pred ccceEEEeeeEeCCCceeEEEe-cCCcceEEEEecCCcccc---CCceEEEEeccCcceEEEeecCCC
Q 017981 189 ALEDLSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDY---ITKYKVIIRAPNLEQLYIRDHGPG 252 (363)
Q Consensus 189 ~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~---~~~~~~~~~~p~L~~L~l~~~~~~ 252 (363)
+||.|.+++-.+........+- -++|+.|+++........ ....+....+|+|+.|+.+|....
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 8888888874433220111222 367888888776543221 001122234788888888876554
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=7.6e-05 Score=63.92 Aligned_cols=180 Identities=16% Similarity=0.106 Sum_probs=116.9
Q ss_pred CCceEEEEEcCCCccc-cCCcccccCCcccEEEecccccccCCCc--ccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981 116 RNVREIEISLNDDECI-ELPHCIYTCKTLEVLKLDMNFFIKTPPT--IFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (363)
..++++++.++....+ ++...+-++|.|+.|+|+.|.+..+.+. ....+|++|.|.+...+-...++.+...|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 4899999976654322 3445666789999999999988865332 467799999999987765677888999999999
Q ss_pred EEEeeeEeC----CCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce----eeecCCCceE
Q 017981 193 LSIKGYIYG----TDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY----VVHELHSLTK 264 (363)
Q Consensus 193 L~L~~c~~~----~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~----~~~~~~~L~~ 264 (363)
|.++.|... +. ....-.++.+++|+...|...-+ .....+....|+++.+.+-.+..-.. ..+.+|.+.-
T Consensus 151 lHmS~N~~rq~n~Dd-~c~e~~s~~v~tlh~~~c~~~~w-~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDD-NCIEDWSTEVLTLHQLPCLEQLW-LNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhccchhhhhcccc-ccccccchhhhhhhcCCcHHHHH-HHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 999998521 12 34455568899999999854322 22344556678888887776643211 1223343332
Q ss_pred EEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981 265 AVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM 307 (363)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 307 (363)
+.+....- + .-+-...+.+++.+..|.++.+++
T Consensus 229 LnL~~~~i---------d-swasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 229 LNLGANNI---------D-SWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred hhhccccc---------c-cHHHHHHHcCCchhheeeccCCcc
Confidence 22221110 0 001345567778888888877665
No 43
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.05 E-value=1.1e-05 Score=63.47 Aligned_cols=128 Identities=21% Similarity=0.183 Sum_probs=80.8
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccC-CCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT-PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (363)
.+++.|.++... -.++|..+.++++|+.|+++-+.+... .++.+||.|+.|+|.++......+-.=+-....|+.|+
T Consensus 56 ~nlevln~~nnq--ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 56 KNLEVLNLSNNQ--IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhhcccch--hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 467777776655 358898899999999999998887754 57889999999999988766542222122345677777
Q ss_pred EeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981 195 IKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP 251 (363)
Q Consensus 195 L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 251 (363)
|.++.+.-+ .-.+ .-.+|+.|.+.++...+. .+-.-....|++|++.|+..
T Consensus 134 l~dndfe~l--p~dvg~lt~lqil~lrdndll~l----pkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 134 LGDNDFEIL--PPDVGKLTNLQILSLRDNDLLSL----PKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hcCCCcccC--ChhhhhhcceeEEeeccCchhhC----cHHHHHHHHHHHHhccccee
Confidence 777664433 1111 124566666666543221 11223445677777777643
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.98 E-value=0.0015 Score=53.07 Aligned_cols=104 Identities=18% Similarity=0.114 Sum_probs=60.9
Q ss_pred CcccEEEecccccccCCCcccCcccceeeeeeEEEccc--hHHHHhccCCccceEEEeeeEeCCCcee--EEEecCCcce
Q 017981 141 KTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNN--FSDWLFSKCPALEDLSIKGYIYGTDSVT--LNIPSLTLKR 216 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~l~~ll~~cp~Le~L~L~~c~~~~~~~~--l~i~~~~L~~ 216 (363)
.+...++|+.+.+.....+..+++|.+|.|..++++.= ++..+ .|+|..|.|.+|+.... .. --..||+|++
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnNsi~~l-~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNNSIQEL-GDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhh---ccccceEEecCcchhhh-hhcchhccCCccce
Confidence 34455666666665555666778888888888877643 44433 57888888888763322 11 1234567777
Q ss_pred EEEEecCCccccCCceEEEEeccCcceEEEee
Q 017981 217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRD 248 (363)
Q Consensus 217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 248 (363)
|.+-++........-.-+....|+|+.|++.+
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77777654432112222335567777766654
No 45
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.97 E-value=2.3e-05 Score=69.52 Aligned_cols=208 Identities=15% Similarity=0.109 Sum_probs=114.7
Q ss_pred ccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEee-eEeCCCceeEEEecCCcceEEE
Q 017981 143 LEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKG-YIYGTDSVTLNIPSLTLKRLRL 219 (363)
Q Consensus 143 L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~-c~~~~~~~~l~i~~~~L~~L~l 219 (363)
-+.++|..|.+...| .+..+++|++|+|+++.+..=+ ..-+.+.+.|-+|.+-+ +....+.....-.-.+|+.|.+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 378888888777543 3558999999999999775432 23367788888888877 4333321111112256666666
Q ss_pred EecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeeee-----------------------ce
Q 017981 220 ELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGI-----------------------EC 273 (363)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~-----------------------~~ 273 (363)
..+..... ......++|+|..|.+.++....+ .+..+..++.+.+...+ ..
T Consensus 148 Nan~i~Ci---r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 148 NANHINCI---RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred Chhhhcch---hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 66643211 111224556666666666433211 11111111111111000 00
Q ss_pred ec---------------cCCC-----------chhhHH--HHHHHhhccCcceEEEEeCCcccccccccc-ccCCCCCCC
Q 017981 274 IL---------------DYDS-----------PEDVAQ--AVVDMLRDIKNIKSLSLSSGTMFALDRLDY-ANDHSFPTF 324 (363)
Q Consensus 274 ~~---------------~~~~-----------~~~~~~--~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~-~~~~~~~~~ 324 (363)
+. ..|- .+...+ .-...++.+++|++|.++++.+ ..+.+ +++ ..
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i---~~i~~~aFe----~~ 297 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI---TRIEDGAFE----GA 297 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc---chhhhhhhc----ch
Confidence 00 0000 000011 1445589999999999999877 55554 333 45
Q ss_pred CCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981 325 PFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 325 ~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
..+++|.+..+.-.. .-..++++..+|++|++..||+
T Consensus 298 a~l~eL~L~~N~l~~--v~~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 298 AELQELYLTRNKLEF--VSSGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred hhhhhhhcCcchHHH--HHHHhhhccccceeeeecCCee
Confidence 567777776653211 1223678889999999988874
No 46
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.96 E-value=0.001 Score=35.11 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=23.1
Q ss_pred ccceeeeeeEEEccc-hHHHHhccCC
Q 017981 164 SAKILHVILNTIDNN-FSDWLFSKCP 188 (363)
Q Consensus 164 ~L~~L~L~~~~~~~~-~l~~ll~~cp 188 (363)
+||+|+|..+.+.++ .+++++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999888 8999999998
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.50 E-value=0.0015 Score=42.91 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=43.1
Q ss_pred CceEEEEEcCCCccccCCccc-ccCCcccEEEecccccccC--CCcccCcccceeeeeeEE
Q 017981 117 NVREIEISLNDDECIELPHCI-YTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNT 174 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~ 174 (363)
+++.|.+..+.. ..+|... ..+++|++|++++|.+... ..+.++++|++|++.++.
T Consensus 2 ~L~~L~l~~n~l--~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKL--TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTE--SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCC--CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 577888876643 3667544 4599999999999988754 245699999999998864
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.44 E-value=0.001 Score=40.35 Aligned_cols=34 Identities=32% Similarity=0.421 Sum_probs=15.2
Q ss_pred cccEEEecccccccCCC-cccCcccceeeeeeEEE
Q 017981 142 TLEVLKLDMNFFIKTPP-TIFFPSAKILHVILNTI 175 (363)
Q Consensus 142 ~L~~L~L~~~~~~~~~~-~~~~~~L~~L~L~~~~~ 175 (363)
+|++|+++++.+...++ ...+++|+.|+++++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 45555555555543333 44444455555444443
No 49
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.34 E-value=9.7e-06 Score=71.99 Aligned_cols=45 Identities=24% Similarity=0.215 Sum_probs=20.7
Q ss_pred cCCcccccCCcccEEEecccccccCC-CcccCcccceeeeeeEEEc
Q 017981 132 ELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTID 176 (363)
Q Consensus 132 ~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~ 176 (363)
++++.++.|..|..|+...+.+...| +...+.+|..|++.+++..
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~ 173 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK 173 (565)
T ss_pred ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh
Confidence 44444444444444444444444332 2234445555555555443
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.25 E-value=0.0011 Score=63.75 Aligned_cols=175 Identities=16% Similarity=0.119 Sum_probs=92.9
Q ss_pred CCcceEEEEecCCCChhhHHHHHH-HHHhCCceEEEEEcCC-CccccCCcccccCCcccEEEecccccccCCC-------
Q 017981 88 GNINKFSLRCCGLVDSSRLKLWVS-FATMRNVREIEISLND-DECIELPHCIYTCKTLEVLKLDMNFFIKTPP------- 158 (363)
Q Consensus 88 ~~l~~l~l~~~~~~~~~~~~~wi~-~~~~~~l~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~------- 158 (363)
.+++.|+...+...+...+...-. .-+-...+.+.+...+ ..+.. |-.++...+|+.|.|++|.+...-|
T Consensus 55 ~~~~~f~a~~s~~ads~vl~qLq~i~d~lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~q 133 (1096)
T KOG1859|consen 55 APVDYFRAYVSDNADSRVLEQLQRILDFLQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLSTAKGLQELRHQ 133 (1096)
T ss_pred CCCceeEEecCCcccchHHHHHHHHHHHHhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhhhhhhHHHHHh
Confidence 567777766554444333332211 1112345555553332 21222 6677788889999988886432100
Q ss_pred -------------------------------------------------cccCcccceeeeeeEEEccchHHHHhccCCc
Q 017981 159 -------------------------------------------------TIFFPSAKILHVILNTIDNNFSDWLFSKCPA 189 (363)
Q Consensus 159 -------------------------------------------------~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~ 189 (363)
..-+|.|+.|+|+++.+++-+ .+..||.
T Consensus 134 Le~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~ 210 (1096)
T KOG1859|consen 134 LEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD---NLRRLPK 210 (1096)
T ss_pred hhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH---HHHhccc
Confidence 012456677777777665532 3566777
Q ss_pred cceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCc----eeeecCCCceEE
Q 017981 190 LEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL----YVVHELHSLTKA 265 (363)
Q Consensus 190 Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~----~~~~~~~~L~~~ 265 (363)
|++|+|.+|....+ ..+.....+|..|.+.+|...+- .=.....+|+.|+++.+.... ..+..+.+|+.+
T Consensus 211 LkhLDlsyN~L~~v-p~l~~~gc~L~~L~lrnN~l~tL-----~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L 284 (1096)
T KOG1859|consen 211 LKHLDLSYNCLRHV-PQLSMVGCKLQLLNLRNNALTTL-----RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL 284 (1096)
T ss_pred ccccccccchhccc-cccchhhhhheeeeecccHHHhh-----hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence 77777777765555 44444444577777777643221 001234556666666543321 123345556666
Q ss_pred EEeeeec
Q 017981 266 VVDYGIE 272 (363)
Q Consensus 266 ~l~~~~~ 272 (363)
.+..++.
T Consensus 285 ~LeGNPl 291 (1096)
T KOG1859|consen 285 WLEGNPL 291 (1096)
T ss_pred hhcCCcc
Confidence 6655554
No 51
>PLN03150 hypothetical protein; Provisional
Probab=96.22 E-value=0.0033 Score=61.90 Aligned_cols=105 Identities=13% Similarity=0.054 Sum_probs=65.6
Q ss_pred cccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEE-ecCCcceEE
Q 017981 142 TLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLKRLR 218 (363)
Q Consensus 142 ~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~ 218 (363)
.++.|+|.++.+... .....+++|+.|+|.++.+.+. +...+..+++|+.|+|.+|.+.+. ..-.+ ..++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEE
Confidence 377888888877643 2345788899999998877654 333467888999999988876543 11112 247888998
Q ss_pred EEecCCccccCCceEEEEeccCcceEEEeecC
Q 017981 219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHG 250 (363)
Q Consensus 219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 250 (363)
+.+|........ .+.....++..+.+.++.
T Consensus 497 Ls~N~l~g~iP~--~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNSLSGRVPA--ALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCcccccCCh--HHhhccccCceEEecCCc
Confidence 888865422000 011112345667777653
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.22 E-value=0.0056 Score=52.89 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=92.5
Q ss_pred hccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCcccc-----------------CCceEEEEec---cCcce
Q 017981 184 FSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDY-----------------ITKYKVIIRA---PNLEQ 243 (363)
Q Consensus 184 l~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~-----------------~~~~~~~~~~---p~L~~ 243 (363)
++.+.+|..+.++.|....+ ..+...-|+|.++.+.+....+.. .........+ ..|++
T Consensus 210 l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred hHHhhhhheeeeeccchhhe-eceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence 45678899999999886666 666666689999988876321100 0001122233 34677
Q ss_pred EEEeecCCCc--eeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCC
Q 017981 244 LYIRDHGPGL--YVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSF 321 (363)
Q Consensus 244 L~l~~~~~~~--~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~ 321 (363)
++++++.... ....-.|.++.+.++.+.-. ...-+..+++|..|+++++.+ .-+.- +-
T Consensus 289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-------------~v~nLa~L~~L~~LDLS~N~L---s~~~G----wh 348 (490)
T KOG1259|consen 289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIR-------------TVQNLAELPQLQLLDLSGNLL---AECVG----WH 348 (490)
T ss_pred ccccccchhhhhhhhhhccceeEEecccccee-------------eehhhhhcccceEeecccchh---Hhhhh----hH
Confidence 7777765432 22344577777766544422 223377788888888888765 22221 22
Q ss_pred CCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981 322 PTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 322 ~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
-.+.|.+.|.+..+...+..++.. .=+|..|++..||
T Consensus 349 ~KLGNIKtL~La~N~iE~LSGL~K----LYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIETLSGLRK----LYSLVNLDLSSNQ 385 (490)
T ss_pred hhhcCEeeeehhhhhHhhhhhhHh----hhhheeccccccc
Confidence 367788888888775434444333 3457777777765
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.14 E-value=0.0015 Score=60.68 Aligned_cols=170 Identities=20% Similarity=0.197 Sum_probs=103.6
Q ss_pred ccCCcccEEEecccccccCCCcccCc--ccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcc
Q 017981 138 YTCKTLEVLKLDMNFFIKTPPTIFFP--SAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLK 215 (363)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~ 215 (363)
...+.++.|.+.++.+...+...... +|+.|++.++.+..- ..-+..+|+|+.|.+.+|..... .......+.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhh--hhhhhccccccccccCCchhhhh-hhhhhhhhhhh
Confidence 33467888888888877655555443 899999998876442 22367789999999999886554 22222567888
Q ss_pred eEEEEecCCccccCCceEEEEeccC-cceEEEeecCCC--ceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhh
Q 017981 216 RLRLELEAPEEDYITKYKVIIRAPN-LEQLYIRDHGPG--LYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLR 292 (363)
Q Consensus 216 ~L~l~~~~~~~~~~~~~~~~~~~p~-L~~L~l~~~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 292 (363)
.|.++++..... ......++ |++|.++++... ...+.++..+..+.+....... ....+.
T Consensus 190 ~L~ls~N~i~~l-----~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~------------~~~~~~ 252 (394)
T COG4886 190 NLDLSGNKISDL-----PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED------------LPESIG 252 (394)
T ss_pred heeccCCccccC-----chhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee------------ccchhc
Confidence 888888865321 11112344 888888877321 1223444444444322221100 245677
Q ss_pred ccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEec
Q 017981 293 DIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGV 335 (363)
Q Consensus 293 ~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~ 335 (363)
.+++++.|.++.+.+ ..+. .+..+.+++.|++.+.
T Consensus 253 ~l~~l~~L~~s~n~i---~~i~-----~~~~~~~l~~L~~s~n 287 (394)
T COG4886 253 NLSNLETLDLSNNQI---SSIS-----SLGSLTNLRELDLSGN 287 (394)
T ss_pred cccccceeccccccc---cccc-----cccccCccCEEeccCc
Confidence 777888888888766 3322 1335556777777664
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.07 E-value=0.0025 Score=55.57 Aligned_cols=37 Identities=35% Similarity=0.515 Sum_probs=34.8
Q ss_pred CcccCCCC----hHHHHHHhcCCChhHhhhhhhhccchhhh
Q 017981 8 EDRISCLP----NAILCHILSFLPTKYAVATCVLSSTWKLV 44 (363)
Q Consensus 8 ~d~i~~LP----d~il~~Ils~L~~~d~~~~~~vskrWr~l 44 (363)
.|.|..|| |++-..||+||+..+++.+-.|||+|+.+
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 58899999 99999999999999999999999999853
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=0.00047 Score=58.65 Aligned_cols=81 Identities=21% Similarity=0.098 Sum_probs=55.5
Q ss_pred CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEe
Q 017981 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK 196 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~ 196 (363)
+++.|.++.|..... ....+++.|..|.|+-|.+.....+..|.+|+.|.|+.+.+.+-+=..-+.+.|+|+.|+|.
T Consensus 20 ~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 566677666654221 13345677888888888877666677788888888888877654223346788888888888
Q ss_pred eeEe
Q 017981 197 GYIY 200 (363)
Q Consensus 197 ~c~~ 200 (363)
.|.+
T Consensus 97 ENPC 100 (388)
T KOG2123|consen 97 ENPC 100 (388)
T ss_pred cCCc
Confidence 8663
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.76 E-value=0.022 Score=52.23 Aligned_cols=131 Identities=18% Similarity=0.160 Sum_probs=68.2
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEeccccccc-CCCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIK-TPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (363)
++++.|+++.|.. ..+|. --++|++|.+++|.-.. .|+. -.++|++|.+.+|... ..+ -++|+.|.
T Consensus 52 ~~l~~L~Is~c~L--~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L----~sL---P~sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDI--ESLPV---LPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEI----SGL---PESVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCC--cccCC---CCCCCcEEEccCCCCcccCCch-hhhhhhheEccCcccc----ccc---ccccceEE
Confidence 6788888876642 33441 12468888888764321 2321 2357888888877321 111 25677777
Q ss_pred EeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEE-EEeccCcceEEEeecCCCceeeecC-CCceEEEEe
Q 017981 195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKV-IIRAPNLEQLYIRDHGPGLYVVHEL-HSLTKAVVD 268 (363)
Q Consensus 195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~p~L~~L~l~~~~~~~~~~~~~-~~L~~~~l~ 268 (363)
+..+.. ..+..-.++|++|.+.++..... ... ..-.++|++|.+++|...... ..+ ++|+.+.++
T Consensus 119 L~~n~~----~~L~~LPssLk~L~I~~~n~~~~----~~lp~~LPsSLk~L~Is~c~~i~LP-~~LP~SLk~L~ls 185 (426)
T PRK15386 119 IKGSAT----DSIKNVPNGLTSLSINSYNPENQ----ARIDNLISPSLKTLSLTGCSNIILP-EKLPESLQSITLH 185 (426)
T ss_pred eCCCCC----cccccCcchHhheeccccccccc----cccccccCCcccEEEecCCCcccCc-ccccccCcEEEec
Confidence 754321 12222335788887754321100 000 112357888888876543211 222 356666654
No 57
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.0096 Score=48.49 Aligned_cols=70 Identities=24% Similarity=0.259 Sum_probs=49.7
Q ss_pred HHHHHHHhhccCcceEEEEeCCcccccccccc-ccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEe
Q 017981 284 AQAVVDMLRDIKNIKSLSLSSGTMFALDRLDY-ANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFE 359 (363)
Q Consensus 284 ~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~ 359 (363)
.......+..++.++.|.+..+. .+.+ +++..-+.+++|+.|++++|+.++..++..+ ...++|+.|.|.
T Consensus 114 ~~eGle~L~~l~~i~~l~l~~ck-----~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L~l~ 184 (221)
T KOG3864|consen 114 MYEGLEHLRDLRSIKSLSLANCK-----YFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLRRLHLY 184 (221)
T ss_pred HHHHHHHHhccchhhhheecccc-----chhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhHHHHhc
Confidence 34467778888888888888773 3444 3332334677899999999988888888765 457788877664
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.39 E-value=0.0058 Score=36.97 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=28.9
Q ss_pred cccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCC
Q 017981 163 PSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGT 202 (363)
Q Consensus 163 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~ 202 (363)
++|++|+|.++.+++ +...+..||+|+.|++.+|.+.+
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCC
Confidence 578999999998864 55557899999999999987543
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.31 E-value=0.00084 Score=62.82 Aligned_cols=105 Identities=20% Similarity=0.160 Sum_probs=62.1
Q ss_pred cccCCcccEEEecccccccCCC-cccCcccceeeeeeEEEccc-hHHHHhccCCccceEEEeeeEeCCCceeEEEecCCc
Q 017981 137 IYTCKTLEVLKLDMNFFIKTPP-TIFFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTL 214 (363)
Q Consensus 137 ~~~~~~L~~L~L~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L 214 (363)
+..+++|..|.+..+.+..... ...+++|+.|+|+++.+++- ++. .++.|+.|.+.+|..... ..+.. .+.|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~-~~~~~-l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLISDI-SGLES-LKSL 164 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchhhheeccCcchhc-cCCcc-chhh
Confidence 4456777788888777775555 56677888888888877654 433 345577888877764433 11111 4667
Q ss_pred ceEEEEecCCccccCCceEEEEeccCcceEEEeecC
Q 017981 215 KRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHG 250 (363)
Q Consensus 215 ~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 250 (363)
+.+++.++........ . .....+|+.+.+.++.
T Consensus 165 ~~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIEND--E-LSELISLEELDLGGNS 197 (414)
T ss_pred hcccCCcchhhhhhhh--h-hhhccchHHHhccCCc
Confidence 7777777654322000 0 2344566666666553
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.28 E-value=0.021 Score=48.73 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=31.6
Q ss_pred CCcccEEEecccccccCC------CcccCcccceeeeeeEE---Eccc------hHHHHhccCCccceEEEeeeEe
Q 017981 140 CKTLEVLKLDMNFFIKTP------PTIFFPSAKILHVILNT---IDNN------FSDWLFSKCPALEDLSIKGYIY 200 (363)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~------~~~~~~~L~~L~L~~~~---~~~~------~l~~ll~~cp~Le~L~L~~c~~ 200 (363)
...++.++|++|.+.+.. ..++-.+|+.-++++.- ..++ .+...+.+||.|+...|++|.+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 566777778877766421 11233344444444331 1111 2223455777777777777654
No 61
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.18 E-value=0.0031 Score=58.59 Aligned_cols=188 Identities=16% Similarity=0.158 Sum_probs=116.9
Q ss_pred EEEeccccc-ccCCCcccCcccceeeeeeEEEccchHHHHhccC-CccceEEEeeeEeCCCceeEEEecCCcceEEEEec
Q 017981 145 VLKLDMNFF-IKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKC-PALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELE 222 (363)
Q Consensus 145 ~L~L~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~c-p~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~ 222 (363)
.+.+..+.. ........++.++.|.+.++.+++- ....... ++|++|.+.++....+ ..---..+.|+.|.+.+|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i--~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDI--PPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccC--ccccccchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence 567776666 3223344668899999999987653 3333334 4899999999875433 111223589999999999
Q ss_pred CCccccCCceEEEEeccCcceEEEeecCCCceeee--cCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEE
Q 017981 223 APEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVH--ELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSL 300 (363)
Q Consensus 223 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~--~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L 300 (363)
..... .......++|+.|.++++....+.-. ....|+.+.+...... .....+..+.++..|
T Consensus 174 ~l~~l----~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~------------~~~~~~~~~~~l~~l 237 (394)
T COG4886 174 DLSDL----PKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII------------ELLSSLSNLKNLSGL 237 (394)
T ss_pred hhhhh----hhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce------------ecchhhhhccccccc
Confidence 76432 11112789999999999877655433 3333777766544211 134445566666666
Q ss_pred EEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981 301 SLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 301 ~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
.+..... ..+.. .+..+.+++.|++..+...+... +....+|+.|+++.+.
T Consensus 238 ~l~~n~~---~~~~~----~~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 238 ELSNNKL---EDLPE----SIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNS 288 (394)
T ss_pred ccCCcee---eeccc----hhccccccceecccccccccccc----ccccCccCEEeccCcc
Confidence 6555544 22111 34456668888888876533333 6677888888887653
No 62
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.12 E-value=0.019 Score=58.52 Aligned_cols=105 Identities=15% Similarity=0.072 Sum_probs=50.4
Q ss_pred CCcccEEEecccc--cccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEe-cCCc
Q 017981 140 CKTLEVLKLDMNF--FIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTL 214 (363)
Q Consensus 140 ~~~L~~L~L~~~~--~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L 214 (363)
|+.|++|-+.++. +...+. +..+|.|+.|+|++|.-.. .+-.-++..-+|++|.+.++....+ ...+. -..|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~~L--P~~l~~Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGISHL--PSGLGNLKKL 620 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcccc--chHHHHHHhh
Confidence 4556666666553 222222 3456666666666543211 2333355556666666665443221 00111 1356
Q ss_pred ceEEEEecCCccccCCceEEEEeccCcceEEEeecC
Q 017981 215 KRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHG 250 (363)
Q Consensus 215 ~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 250 (363)
..|++........ ...+...+++|++|.+....
T Consensus 621 ~~Lnl~~~~~l~~---~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 621 IYLNLEVTGRLES---IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred heecccccccccc---ccchhhhcccccEEEeeccc
Confidence 6666665543211 12233346778888777653
No 63
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.03 E-value=0.014 Score=52.72 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=33.7
Q ss_pred ccCCCChHHHHHHhcCCC-hhHhhhhhhhccchhhhhcc
Q 017981 10 RISCLPNAILCHILSFLP-TKYAVATCVLSSTWKLVWTS 47 (363)
Q Consensus 10 ~i~~LPd~il~~Ils~L~-~~d~~~~~~vskrWr~l~~~ 47 (363)
.+++||+|+|..|..+|+ .-|++|.+.||+.||.....
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 378999999999999995 68999999999999986544
No 64
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.02 E-value=0.013 Score=50.70 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=30.2
Q ss_pred cccCCCChHHHHHHhcC-----CChhHhhhhhhhccchhh
Q 017981 9 DRISCLPNAILCHILSF-----LPTKYAVATCVLSSTWKL 43 (363)
Q Consensus 9 d~i~~LPd~il~~Ils~-----L~~~d~~~~~~vskrWr~ 43 (363)
+.|+.||||||..||.. |+.+++.+++.|||.|+.
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 45789999999999875 457999999999999985
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.92 E-value=0.036 Score=45.29 Aligned_cols=102 Identities=20% Similarity=0.158 Sum_probs=70.2
Q ss_pred CcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCc
Q 017981 162 FPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNL 241 (363)
Q Consensus 162 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L 241 (363)
..+...++|.++.+... ..+...+.|..|.+.+|....+...+.-..|.|++|.+.+|+.... +...-...||+|
T Consensus 41 ~d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l--~dl~pLa~~p~L 115 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL--GDLDPLASCPKL 115 (233)
T ss_pred ccccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh--hhcchhccCCcc
Confidence 34556778887765433 2267788999999999875444234444458999999999976432 112233678999
Q ss_pred ceEEEeecCCC------ceeeecCCCceEEEEe
Q 017981 242 EQLYIRDHGPG------LYVVHELHSLTKAVVD 268 (363)
Q Consensus 242 ~~L~l~~~~~~------~~~~~~~~~L~~~~l~ 268 (363)
++|.+-|+... -+.+..+|+|+.++..
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 99999997653 3567788888877653
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.18 E-value=0.004 Score=53.17 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=45.3
Q ss_pred CcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHh
Q 017981 213 TLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDML 291 (363)
Q Consensus 213 ~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 291 (363)
+.|+|+.++|... +..+...+|.||.|.++=+.+.+. .+..|..|+++++.-+.-. .-.-...+
T Consensus 20 ~vkKLNcwg~~L~-----DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~----------sldEL~YL 84 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-----DISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIE----------SLDELEYL 84 (388)
T ss_pred HhhhhcccCCCcc-----HHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccc----------cHHHHHHH
Confidence 5677888887653 235667788888888886654432 3555666666655422110 00135556
Q ss_pred hccCcceEEEEeCC
Q 017981 292 RDIKNIKSLSLSSG 305 (363)
Q Consensus 292 ~~l~~l~~L~l~~~ 305 (363)
+++++|+.|.|..+
T Consensus 85 knlpsLr~LWL~EN 98 (388)
T KOG2123|consen 85 KNLPSLRTLWLDEN 98 (388)
T ss_pred hcCchhhhHhhccC
Confidence 66666666666443
No 67
>PLN03150 hypothetical protein; Provisional
Probab=93.10 E-value=0.094 Score=51.81 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=73.3
Q ss_pred ceEEEEEcCCCccccCCcccccCCcccEEEecccccccC-C-CcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 118 VREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT-P-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 118 l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
++.|.|..+.. ...+|..+..+++|+.|+|++|.+.+. | ....+++|+.|+|+++.+.+. +...+..+++|++|.|
T Consensus 420 v~~L~L~~n~L-~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGL-RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCc-cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEEC
Confidence 55666654443 346788888899999999999988743 3 466899999999999988765 3344778999999999
Q ss_pred eeeEeCCC-ceeEEEecCCcceEEEEecC
Q 017981 196 KGYIYGTD-SVTLNIPSLTLKRLRLELEA 223 (363)
Q Consensus 196 ~~c~~~~~-~~~l~i~~~~L~~L~l~~~~ 223 (363)
.+|.+.+. ...+.-...++..+.+.+|.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCc
Confidence 99875442 01111112345667777663
No 68
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.95 E-value=0.094 Score=53.58 Aligned_cols=153 Identities=16% Similarity=0.108 Sum_probs=90.0
Q ss_pred cCCcccEEEecccccccCCCcccCcccceeeeeeEEE-ccchHHHHhccCCccceEEEeeeEeCCCceeEEEe-cCCcce
Q 017981 139 TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTI-DNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTLKR 216 (363)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L~~ 216 (363)
.....+..++-++.+...++...+|+|++|-+..+.. ....-..++...|.|..|+|.+|.-.+. -.-.|. --+|+.
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhc
Confidence 3467788888877776567777888999999999863 2222345577889999999998762221 011122 257888
Q ss_pred EEEEecCCccccCCceEEEEeccCcceEEEeecCCCc---eeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhc
Q 017981 217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL---YVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRD 293 (363)
Q Consensus 217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (363)
|++.+...... ..-......|.+|++....... -....+++|+.+.+-.... ........-+..
T Consensus 600 L~L~~t~I~~L----P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~---------~~~~~~l~el~~ 666 (889)
T KOG4658|consen 600 LDLSDTGISHL----PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL---------SNDKLLLKELEN 666 (889)
T ss_pred ccccCCCcccc----chHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc---------ccchhhHHhhhc
Confidence 88888754311 1111223456666666543221 1223477788777654431 111224444577
Q ss_pred cCcceEEEEeCC
Q 017981 294 IKNIKSLSLSSG 305 (363)
Q Consensus 294 l~~l~~L~l~~~ 305 (363)
+.+|+.|++...
T Consensus 667 Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 667 LEHLENLSITIS 678 (889)
T ss_pred ccchhhheeecc
Confidence 777777777554
No 69
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.57 E-value=0.096 Score=27.46 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=21.3
Q ss_pred CCCcceEEEEeccCCChHHHHHHHH
Q 017981 324 FPFLNRLEVEGVGACGWLSLAHIFS 348 (363)
Q Consensus 324 ~~~L~~L~l~~~~~~~~~~l~~ll~ 348 (363)
+++|++|++..|..+++.++..+.+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 3579999999999999999988754
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.83 E-value=0.058 Score=45.79 Aligned_cols=43 Identities=21% Similarity=0.306 Sum_probs=27.2
Q ss_pred CCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981 320 SFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 320 ~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
.+|.+++|+.|.++.+...-..++..++.+||+|++|.+++|+
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 4666667777777665332334566666677777777777665
No 71
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=91.79 E-value=0.083 Score=50.84 Aligned_cols=39 Identities=31% Similarity=0.505 Sum_probs=36.1
Q ss_pred CCCcccCCCChHHHHHHhcCCChhHhhhhhhhccchhhh
Q 017981 6 STEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLV 44 (363)
Q Consensus 6 ~~~d~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l 44 (363)
...|.++.||-|+..+|+++|+.++++++++||+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 457899999999999999999999999999999999854
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.35 E-value=0.096 Score=49.08 Aligned_cols=101 Identities=16% Similarity=0.055 Sum_probs=67.2
Q ss_pred CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccc-hHHHHhccCCccceEEE
Q 017981 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSI 195 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L 195 (363)
+++.+.+..... ..+...+..+++|++|+|+++.+....+...++.|+.|++.++.+.+- + +..++.|+.+.+
T Consensus 96 ~l~~l~l~~n~i--~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~----~~~l~~L~~l~l 169 (414)
T KOG0531|consen 96 SLEALDLYDNKI--EKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG----LESLKSLKLLDL 169 (414)
T ss_pred ceeeeeccccch--hhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC----CccchhhhcccC
Confidence 455555543321 122222556888999999998888777777788889999998887655 4 233788888888
Q ss_pred eeeEeCCCceeE-EEecCCcceEEEEecCC
Q 017981 196 KGYIYGTDSVTL-NIPSLTLKRLRLELEAP 224 (363)
Q Consensus 196 ~~c~~~~~~~~l-~i~~~~L~~L~l~~~~~ 224 (363)
.+|..... ... .....+++.+.+.++..
T Consensus 170 ~~n~i~~i-e~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 170 SYNRIVDI-ENDELSELISLEELDLGGNSI 198 (414)
T ss_pred Ccchhhhh-hhhhhhhccchHHHhccCCch
Confidence 88775444 221 12347788888888754
No 73
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=88.85 E-value=0.49 Score=24.82 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=20.4
Q ss_pred CcceEEEEeccCCChHHHHHHHHhCC
Q 017981 326 FLNRLEVEGVGACGWLSLAHIFSRMP 351 (363)
Q Consensus 326 ~L~~L~l~~~~~~~~~~l~~ll~~~p 351 (363)
.||+|.+......+...+..++.+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 37888888766556678999999998
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.43 E-value=0.16 Score=25.96 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=11.6
Q ss_pred CcccceeeeeeEEEccchHHHH
Q 017981 162 FPSAKILHVILNTIDNNFSDWL 183 (363)
Q Consensus 162 ~~~L~~L~L~~~~~~~~~l~~l 183 (363)
+++|++|+|+++.++++++..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3566667777666666654443
No 75
>PRK15386 type III secretion protein GogB; Provisional
Probab=88.35 E-value=1.5 Score=40.58 Aligned_cols=115 Identities=22% Similarity=0.133 Sum_probs=65.2
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEeccc-ccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMN-FFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (363)
.++++|.+..|.. -..+|..+ .++|++|.+.+| .+...| ++|++|.+.+.... .+. .--++|++|.
T Consensus 72 ~sLtsL~Lsnc~n-LtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~~n~~~--~L~---~LPssLk~L~ 138 (426)
T PRK15386 72 NELTEITIENCNN-LTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSLEIKGSATD--SIK---NVPNGLTSLS 138 (426)
T ss_pred CCCcEEEccCCCC-cccCCchh--hhhhhheEccCcccccccc-----cccceEEeCCCCCc--ccc---cCcchHhhee
Confidence 4799999976553 22344322 368999999988 443222 46888887643221 122 2236788888
Q ss_pred EeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeec
Q 017981 195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDH 249 (363)
Q Consensus 195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 249 (363)
+..+........-..-.++|+.|.+.+|..... ...-.++|++|.++.+
T Consensus 139 I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~L------P~~LP~SLk~L~ls~n 187 (426)
T PRK15386 139 INSYNPENQARIDNLISPSLKTLSLTGCSNIIL------PEKLPESLQSITLHIE 187 (426)
T ss_pred ccccccccccccccccCCcccEEEecCCCcccC------cccccccCcEEEeccc
Confidence 855331111001112237899999998864311 0011257888888754
No 76
>PF13013 F-box-like_2: F-box-like domain
Probab=86.68 E-value=0.43 Score=35.14 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=26.6
Q ss_pred ccCCCChHHHHHHhcCCChhHhhhhhhhcc
Q 017981 10 RISCLPNAILCHILSFLPTKYAVATCVLSS 39 (363)
Q Consensus 10 ~i~~LPd~il~~Ils~L~~~d~~~~~~vsk 39 (363)
.+.+||+||+..|+.+-+..+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 378999999999999999999888877776
No 77
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=86.06 E-value=0.046 Score=53.14 Aligned_cols=82 Identities=18% Similarity=0.105 Sum_probs=41.2
Q ss_pred ccccCCcccEEEecccccccCCCc--ccCcccceeeeeeEEEccc-hHHHHhccCCccceEEEeeeEeCCCceeEEEec-
Q 017981 136 CIYTCKTLEVLKLDMNFFIKTPPT--IFFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPS- 211 (363)
Q Consensus 136 ~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~- 211 (363)
.+..|++|++|+|++|.+...|.+ .+|. |..|.|+++.++.- ++ .+..+|+.|++.+|-..+.++..-.-+
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gi----e~LksL~~LDlsyNll~~hseL~pLwsL 278 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGI----ENLKSLYGLDLSYNLLSEHSELEPLWSL 278 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhH----HhhhhhhccchhHhhhhcchhhhHHHHH
Confidence 334466666666666665544332 2444 66666666654433 32 234666666666654333311111111
Q ss_pred CCcceEEEEec
Q 017981 212 LTLKRLRLELE 222 (363)
Q Consensus 212 ~~L~~L~l~~~ 222 (363)
..|+.|.+.+|
T Consensus 279 s~L~~L~LeGN 289 (1096)
T KOG1859|consen 279 SSLIVLWLEGN 289 (1096)
T ss_pred HHHHHHhhcCC
Confidence 45666666665
No 78
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=84.76 E-value=0.038 Score=52.09 Aligned_cols=164 Identities=19% Similarity=0.124 Sum_probs=71.3
Q ss_pred cEEEecccccccCCC-cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEec
Q 017981 144 EVLKLDMNFFIKTPP-TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELE 222 (363)
Q Consensus 144 ~~L~L~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~ 222 (363)
+..+|+.+++...|. +..|-.|..|.|..+++-.- -.-+.....|..|+|..+..... ...+----|+.|.+.++
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~i--p~~i~~L~~lt~l~ls~NqlS~l--p~~lC~lpLkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTI--PEAICNLEALTFLDLSSNQLSHL--PDGLCDLPLKVLIVSNN 153 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccceec--chhhhhhhHHHHhhhccchhhcC--ChhhhcCcceeEEEecC
Confidence 444555555544332 23455555555555543221 11122334455555555442221 11111123555555555
Q ss_pred CCccccCCceEEEEeccCcceEEEeecCCCce--eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhc--cCcce
Q 017981 223 APEEDYITKYKVIIRAPNLEQLYIRDHGPGLY--VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRD--IKNIK 298 (363)
Q Consensus 223 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~--~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--l~~l~ 298 (363)
....- ...+. ..+.|..|+.+.+..... .++.+.+|+.+.+.-+. +..+... .-.|.
T Consensus 154 kl~~l---p~~ig-~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~---------------l~~lp~El~~LpLi 214 (722)
T KOG0532|consen 154 KLTSL---PEEIG-LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH---------------LEDLPEELCSLPLI 214 (722)
T ss_pred ccccC---Ccccc-cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh---------------hhhCCHHHhCCcee
Confidence 43321 11222 456666666666544322 13333444444332111 1112111 22456
Q ss_pred EEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC
Q 017981 299 SLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA 337 (363)
Q Consensus 299 ~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 337 (363)
.|+++.+.+ .++-. .+..+.+|+.|.+..++-
T Consensus 215 ~lDfScNki---s~iPv----~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 215 RLDFSCNKI---SYLPV----DFRKMRHLQVLQLENNPL 246 (722)
T ss_pred eeecccCce---eecch----hhhhhhhheeeeeccCCC
Confidence 677777655 33222 223566677777777653
No 79
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=81.75 E-value=0.06 Score=50.81 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=33.7
Q ss_pred CCcccccCCcccEEEecccccccC-CCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEec
Q 017981 133 LPHCIYTCKTLEVLKLDMNFFIKT-PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPS 211 (363)
Q Consensus 133 l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~ 211 (363)
+|..+..|..|..+.|.-+.+... ....++..|+.|+|+.+....- -.-+..|| |+.|.+.++....+...++ ..
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~l--p~~lC~lp-Lkvli~sNNkl~~lp~~ig-~~ 165 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHL--PDGLCDLP-LKVLIVSNNKLTSLPEEIG-LL 165 (722)
T ss_pred CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcC--ChhhhcCc-ceeEEEecCccccCCcccc-cc
Confidence 333333344444444443333221 2223444445555554443221 11123334 5555555544333222223 23
Q ss_pred CCcceEEEEec
Q 017981 212 LTLKRLRLELE 222 (363)
Q Consensus 212 ~~L~~L~l~~~ 222 (363)
++|..|+.+.|
T Consensus 166 ~tl~~ld~s~n 176 (722)
T KOG0532|consen 166 PTLAHLDVSKN 176 (722)
T ss_pred hhHHHhhhhhh
Confidence 44444444444
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=80.75 E-value=0.98 Score=20.91 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=5.8
Q ss_pred cccEEEecccccc
Q 017981 142 TLEVLKLDMNFFI 154 (363)
Q Consensus 142 ~L~~L~L~~~~~~ 154 (363)
+|+.|+|++|.+.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666665543
No 81
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=78.47 E-value=2.3 Score=26.44 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=28.1
Q ss_pred CCcceEEEEeccC--CChHHHHHHHHhCCCCcceEEe
Q 017981 325 PFLNRLEVEGVGA--CGWLSLAHIFSRMPKLESIVFE 359 (363)
Q Consensus 325 ~~L~~L~l~~~~~--~~~~~l~~ll~~~p~L~~L~l~ 359 (363)
.+|+.+.+.+..+ ....-+..++++++.||++.|.
T Consensus 14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 5799999887554 2446788899999999999986
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.11 E-value=1.8 Score=35.66 Aligned_cols=50 Identities=8% Similarity=0.067 Sum_probs=39.6
Q ss_pred cccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeee
Q 017981 311 DRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEV 361 (363)
Q Consensus 311 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 361 (363)
++..+.++ .+-.++.++.|.+..|...++..+..+-.-.|+|+.|+|+++
T Consensus 112 ~I~~eGle-~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC 161 (221)
T KOG3864|consen 112 SIMYEGLE-HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGC 161 (221)
T ss_pred hHHHHHHH-HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCC
Confidence 33444455 455667788889999998888899999999999999999865
No 83
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=75.58 E-value=2.1 Score=30.83 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.6
Q ss_pred cccCCCChHHHHHHhcCCChhHhhh
Q 017981 9 DRISCLPNAILCHILSFLPTKYAVA 33 (363)
Q Consensus 9 d~i~~LPd~il~~Ils~L~~~d~~~ 33 (363)
..+..||.|+-.+|+++|+..|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6789999999999999999998754
No 84
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=74.57 E-value=1.8 Score=21.50 Aligned_cols=13 Identities=38% Similarity=0.376 Sum_probs=8.3
Q ss_pred cccEEEecccccc
Q 017981 142 TLEVLKLDMNFFI 154 (363)
Q Consensus 142 ~L~~L~L~~~~~~ 154 (363)
+|++|+|++|.+.
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4666777766555
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=70.44 E-value=2 Score=22.89 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=14.6
Q ss_pred cccceeeeeeEEEccchHHHH
Q 017981 163 PSAKILHVILNTIDNNFSDWL 183 (363)
Q Consensus 163 ~~L~~L~L~~~~~~~~~l~~l 183 (363)
++|++|+|+++.+.+++...+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 567888888887776655444
No 86
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=68.18 E-value=2 Score=36.77 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=38.2
Q ss_pred ccCCCChHHHHHHhcCCC-hhHhhhhhhhccch------hhhhccCcceEEecCcc
Q 017981 10 RISCLPNAILCHILSFLP-TKYAVATCVLSSTW------KLVWTSLPNLCFDDRLC 58 (363)
Q Consensus 10 ~i~~LPd~il~~Ils~L~-~~d~~~~~~vskrW------r~l~~~~~~l~~~~~~~ 58 (363)
-+.+||.|++..|+.+|+ -+|+..+++|-..- +.+|+.+..++|.+..+
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi 256 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI 256 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 478999999999999996 69999999884433 45788777677766443
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.16 E-value=0.99 Score=42.73 Aligned_cols=66 Identities=21% Similarity=0.154 Sum_probs=43.4
Q ss_pred cCcccceeeeeeEEEccc-hHHHHhccCCccceEEEeee--EeCCCceeEEEecCCcceEEEEecCCcc
Q 017981 161 FFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGY--IYGTDSVTLNIPSLTLKRLRLELEAPEE 226 (363)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c--~~~~~~~~l~i~~~~L~~L~l~~~~~~~ 226 (363)
.+|.+..++|+++++-.- ++.++....|+|..|.|..+ ......+.-......|++|.+.+|...+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 577777778887776544 66777777888888888877 2222212334445677788888776543
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=62.26 E-value=0.22 Score=47.25 Aligned_cols=176 Identities=16% Similarity=0.130 Sum_probs=0.0
Q ss_pred cccCCcccEEEecccccccC------CCcccC-cccceeeeeeEEEccc---hHHHHhccCCccceEEEeeeEeCCCcee
Q 017981 137 IYTCKTLEVLKLDMNFFIKT------PPTIFF-PSAKILHVILNTIDNN---FSDWLFSKCPALEDLSIKGYIYGTDSVT 206 (363)
Q Consensus 137 ~~~~~~L~~L~L~~~~~~~~------~~~~~~-~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~c~~~~~~~~ 206 (363)
+...++|..|+++++.+.+. .+.... ..|++|.+..|..++. .+...+..++.|+.|++..|..... .
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~--g 188 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIEL--G 188 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchh--h
Q ss_pred EEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCceEEEEeeeeceeccCCCchhhHHH
Q 017981 207 LNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQA 286 (363)
Q Consensus 207 l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~ 286 (363)
..+.++.+++ ......++++|++..+.. ....-..
T Consensus 189 ~~~l~~~l~~-----------------~~~~~~~le~L~L~~~~~----------------------------t~~~c~~ 223 (478)
T KOG4308|consen 189 LLVLSQALES-----------------AASPLSSLETLKLSRCGV----------------------------TSSSCAL 223 (478)
T ss_pred hHHHhhhhhh-----------------hhcccccHHHHhhhhcCc----------------------------ChHHHHH
Q ss_pred HHHHhhccCc-ceEEEEeCCcccccccccc--ccCCCCCCC-CCcceEEEEeccC--CChHHHHHHHHhCCCCcceEEee
Q 017981 287 VVDMLRDIKN-IKSLSLSSGTMFALDRLDY--ANDHSFPTF-PFLNRLEVEGVGA--CGWLSLAHIFSRMPKLESIVFEE 360 (363)
Q Consensus 287 ~~~~l~~l~~-l~~L~l~~~~~~~~~~l~~--~~~~~~~~~-~~L~~L~l~~~~~--~~~~~l~~ll~~~p~L~~L~l~~ 360 (363)
+...+...+. +..|.+..+.. .-... ..+ .++.. +.++++++..+.. .....+...+..|+.++.+.+..
T Consensus 224 l~~~l~~~~~~~~el~l~~n~l---~d~g~~~L~~-~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~ 299 (478)
T KOG4308|consen 224 LDEVLASGESLLRELDLASNKL---GDVGVEKLLP-CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSN 299 (478)
T ss_pred HHHHHhccchhhHHHHHHhcCc---chHHHHHHHH-HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhccc
Q ss_pred ecC
Q 017981 361 VRM 363 (363)
Q Consensus 361 ~~~ 363 (363)
+.+
T Consensus 300 n~l 302 (478)
T KOG4308|consen 300 NPL 302 (478)
T ss_pred Ccc
No 89
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=61.70 E-value=1.7 Score=33.53 Aligned_cols=59 Identities=29% Similarity=0.333 Sum_probs=35.0
Q ss_pred CCcccEEEecccccccCCC-c-ccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEe
Q 017981 140 CKTLEVLKLDMNFFIKTPP-T-IFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIY 200 (363)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~-~-~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~ 200 (363)
-..|+..+|++|.+...|. + .-||.+++|+|.++.+.+--.+ +...|.|+.|.++.|.+
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPL 112 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCcc
Confidence 3455566666666665432 1 2466677777777766543222 55667777777777653
No 90
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=61.67 E-value=9.8 Score=25.44 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=24.4
Q ss_pred CcceEEEEeccCC--ChHHHHHHHHhCCCCcceEEeee
Q 017981 326 FLNRLEVEGVGAC--GWLSLAHIFSRMPKLESIVFEEV 361 (363)
Q Consensus 326 ~L~~L~l~~~~~~--~~~~l~~ll~~~p~L~~L~l~~~ 361 (363)
+|+.+.+.+..+. ....+..|++++|.||.+.|...
T Consensus 6 ~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~ 43 (72)
T smart00579 6 SLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVE 43 (72)
T ss_pred eEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEee
Confidence 4777777665442 33567778888888888877653
No 91
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=42.11 E-value=9.1 Score=29.73 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=52.9
Q ss_pred CCceEEEEEcCCCccccCCccccc-CCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981 116 RNVREIEISLNDDECIELPHCIYT-CKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (363)
++.+-..+++....--.+|..+.. .+..+.|+|..+.+.+.| ..+.+|.|+.|+++.+.+... -+++....+|-.|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~--p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAE--PRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccc--hHHHHHHHhHHHh
Confidence 455554455544333456655543 678999999999888654 467899999999999987554 3334334555555
Q ss_pred EEeeeE
Q 017981 194 SIKGYI 199 (363)
Q Consensus 194 ~L~~c~ 199 (363)
+..++.
T Consensus 129 ds~~na 134 (177)
T KOG4579|consen 129 DSPENA 134 (177)
T ss_pred cCCCCc
Confidence 555543
No 92
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=41.16 E-value=30 Score=25.81 Aligned_cols=57 Identities=25% Similarity=0.308 Sum_probs=22.3
Q ss_pred ccCCcccEEEeccc-ccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEe
Q 017981 138 YTCKTLEVLKLDMN-FFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK 196 (363)
Q Consensus 138 ~~~~~L~~L~L~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~ 196 (363)
.+|.+|+.+.+... .-.....+.++++|+.+.+... +..-+ ...+..|+.|+.+.+.
T Consensus 9 ~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~-~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 9 YNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIG-DNAFSNCKSLESITFP 66 (129)
T ss_dssp TT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEET
T ss_pred hCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccccc-eeeeeccccccccccc
Confidence 34666666666532 1111223445556666666542 11111 2235566666666664
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=39.17 E-value=24 Score=17.94 Aligned_cols=15 Identities=27% Similarity=0.240 Sum_probs=8.9
Q ss_pred CcccEEEeccccccc
Q 017981 141 KTLEVLKLDMNFFIK 155 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~ 155 (363)
++|++|+|.+|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666665553
No 94
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=39.17 E-value=24 Score=17.94 Aligned_cols=15 Identities=27% Similarity=0.240 Sum_probs=8.9
Q ss_pred CcccEEEeccccccc
Q 017981 141 KTLEVLKLDMNFFIK 155 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~ 155 (363)
++|++|+|.+|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666665553
No 95
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=38.70 E-value=1.7e+02 Score=22.11 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCC--CCcceEEEEecCCCChhhHHHHHHHHHhCCceEEEEEcCCCccccCCccc--ccCCcccEEEec
Q 017981 74 RFENFVHRVLLSAS--GNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCI--YTCKTLEVLKLD 149 (363)
Q Consensus 74 ~~~~~i~~~l~~~~--~~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~l~~~~--~~~~~L~~L~L~ 149 (363)
+|.+.+...+.. . -.++++.+.. .....+..++...-...++++.+ ........+...+ -+.++++.+.+.
T Consensus 2 ~~~~~l~~~l~s-~~~l~vk~l~i~~---~~~~~~~~iL~~l~p~~L~~i~i-~~~~~~~~~~~i~~~eqWk~~k~~~i~ 76 (142)
T PF01827_consen 2 KFFEKLQEILKS-KHKLKVKKLKINS---LNQSEVLSILPFLDPGVLEEIRI-NDEEEEEDFDEIVELEQWKNAKEFKIG 76 (142)
T ss_pred hHHHHHHHHHcC-CCCeeEEEEEEEc---CCHHHHHHHHhcCCCCcCEEEEC-cCcccccchhheeehHHhceeheeEec
Confidence 455566666777 4 4566777664 34566777777666668999999 2221122333322 236788888888
Q ss_pred ccccccCCCcccCcccceeeeeeEEEccchH---HHHhccCCccceEEE
Q 017981 150 MNFFIKTPPTIFFPSAKILHVILNTIDNNFS---DWLFSKCPALEDLSI 195 (363)
Q Consensus 150 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l---~~ll~~cp~Le~L~L 195 (363)
+..... .....+..+....+..-.++.+++ ...+..-|+.+...+
T Consensus 77 ~~~~~~-~~l~~f~h~~~~~i~~~~~t~~di~~l~~~l~~~~~~~~~~i 124 (142)
T PF01827_consen 77 GFVIDS-FPLENFSHFEKFNIHFESITVEDIWKLKENLLKSPNFKYFRI 124 (142)
T ss_pred cccccc-HHHHhCCCccEEEEEEEeCCHHHHHHHHHHHcCCCCceEEEE
Confidence 765531 134456666777775545555433 344556666666666
No 96
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=31.96 E-value=13 Score=33.13 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=32.7
Q ss_pred cCCCChHHHHHHhcCCChhHhhhhhhhccchhhhhcc
Q 017981 11 ISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTS 47 (363)
Q Consensus 11 i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l~~~ 47 (363)
+.++|++++..|++++.-+++.++|.|++|-..+-+.
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~ 44 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSH 44 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhc
Confidence 6789999999999999999999999999999765333
No 97
>PF03448 MgtE_N: MgtE intracellular N domain; InterPro: IPR006668 This domain is found at the N terminus of eubacterial magnesium transporters of the MgtE family IPR006667 from INTERPRO. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter [] shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.; PDB: 2YVX_D 2ZY9_A 2YVZ_B 2YVY_A 2OUX_A 3KXR_A.
Probab=29.51 E-value=74 Score=22.65 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=20.2
Q ss_pred CCCCCCcccCCCChHHHHHHhcCCChhHhhhh
Q 017981 3 NGPSTEDRISCLPNAILCHILSFLPTKYAVAT 34 (363)
Q Consensus 3 ~~~~~~d~i~~LPd~il~~Ils~L~~~d~~~~ 34 (363)
..+....-++.+|++-+..|++.++..|++..
T Consensus 38 ~~~~~~~il~~l~~~~~a~il~~m~~dd~~~l 69 (102)
T PF03448_consen 38 DPDTQAEILEALSPEEAAEILAEMDSDDAADL 69 (102)
T ss_dssp -CCCCCHCCCCS-HHHHHHHHCCS-HHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHccChHHHHHH
Confidence 34444556777888888888888887776544
No 98
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=28.36 E-value=94 Score=23.46 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=21.6
Q ss_pred CcceEEEEeccCCChHHHHHHHHhCCCCcceEE
Q 017981 326 FLNRLEVEGVGACGWLSLAHIFSRMPKLESIVF 358 (363)
Q Consensus 326 ~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l 358 (363)
|=+...+.+-+ +...+..+++.||+|+.+.+
T Consensus 18 nE~~VHlAFRP--SN~Dif~Lv~~CP~lk~iqi 48 (131)
T PF08004_consen 18 NEEIVHLAFRP--SNKDIFSLVERCPNLKAIQI 48 (131)
T ss_pred CceEEEEEecC--cchHHHHHHHhCCCCeEEeC
Confidence 34455565543 34468889999999998765
No 99
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=25.43 E-value=55 Score=17.17 Aligned_cols=16 Identities=13% Similarity=0.416 Sum_probs=12.1
Q ss_pred HHHHhCCCCcceEEee
Q 017981 345 HIFSRMPKLESIVFEE 360 (363)
Q Consensus 345 ~ll~~~p~L~~L~l~~ 360 (363)
.++..+|+|+.|+...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 4677889999987653
No 100
>PRK09718 hypothetical protein; Validated
Probab=23.97 E-value=3.4e+02 Score=26.04 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=15.5
Q ss_pred cceEEEEeccCCChHHHHHHHHhCCCCcc
Q 017981 327 LNRLEVEGVGACGWLSLAHIFSRMPKLES 355 (363)
Q Consensus 327 L~~L~l~~~~~~~~~~l~~ll~~~p~L~~ 355 (363)
|+.|++-... -.+.+..++.+||..|.
T Consensus 291 ~~~~~~~~~~--~~~~~~~~~~~~p~~~~ 317 (512)
T PRK09718 291 LKILNIVNKN--FIENMKKIFSHCPYIKD 317 (512)
T ss_pred HHHHHHhhHH--HHHHHHHHhcCCCcccc
Confidence 5555554321 23456777788887654
No 101
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=22.93 E-value=37 Score=17.71 Aligned_cols=10 Identities=20% Similarity=0.162 Sum_probs=4.0
Q ss_pred ccceeeeeeE
Q 017981 164 SAKILHVILN 173 (363)
Q Consensus 164 ~L~~L~L~~~ 173 (363)
+|+.|+|..+
T Consensus 3 ~L~~L~L~~N 12 (26)
T smart00365 3 NLEELDLSQN 12 (26)
T ss_pred ccCEEECCCC
Confidence 3344444443
No 102
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=21.45 E-value=1.1e+02 Score=17.98 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=4.4
Q ss_pred cCcceEEEe
Q 017981 239 PNLEQLYIR 247 (363)
Q Consensus 239 p~L~~L~l~ 247 (363)
+++++|.++
T Consensus 12 ~~l~~L~~g 20 (44)
T PF05725_consen 12 SSLKSLIFG 20 (44)
T ss_pred CCCeEEEEC
Confidence 445555553
No 103
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=20.32 E-value=41 Score=17.62 Aligned_cols=13 Identities=15% Similarity=0.437 Sum_probs=7.7
Q ss_pred CCCcceEEeeecC
Q 017981 351 PKLESIVFEEVRM 363 (363)
Q Consensus 351 p~L~~L~l~~~~~ 363 (363)
++|+.|.++.|++
T Consensus 2 ~~L~~L~vs~N~L 14 (26)
T smart00364 2 PSLKELNVSNNQL 14 (26)
T ss_pred cccceeecCCCcc
Confidence 3566666666653
Done!