Query 017981
Match_columns 363
No_of_seqs 148 out of 1805
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 08:00:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.9 5.6E-24 1.9E-28 206.5 7.2 333 6-359 4-411 (592)
2 2p1m_B Transport inhibitor res 99.9 2.3E-23 7.8E-28 202.2 4.8 38 7-44 2-40 (594)
3 2ast_B S-phase kinase-associat 99.9 5.6E-24 1.9E-28 191.9 -1.5 283 7-362 5-304 (336)
4 4fcg_A Uncharacterized protein 99.4 2.9E-14 9.8E-19 127.8 4.1 220 115-361 80-311 (328)
5 2z80_A TOLL-like receptor 2, v 99.3 5.8E-12 2E-16 113.9 12.0 224 116-362 52-288 (353)
6 3ogk_B Coronatine-insensitive 99.3 5E-13 1.7E-17 129.4 4.5 194 161-363 291-525 (592)
7 4fmz_A Internalin; leucine ric 99.3 3E-13 1E-17 122.0 1.9 246 88-363 66-323 (347)
8 4fmz_A Internalin; leucine ric 99.3 4.3E-13 1.5E-17 121.1 2.7 214 116-363 110-345 (347)
9 4fcg_A Uncharacterized protein 99.3 1.9E-12 6.5E-17 115.9 6.2 200 140-362 80-288 (328)
10 2p1m_B Transport inhibitor res 99.3 5.3E-13 1.8E-17 129.2 2.3 193 161-361 287-491 (594)
11 2ast_B S-phase kinase-associat 99.3 1.8E-14 6.3E-19 129.4 -7.7 233 108-361 38-282 (336)
12 1h6u_A Internalin H; cell adhe 99.3 7.5E-13 2.5E-17 117.5 1.8 141 116-269 41-182 (308)
13 1o6v_A Internalin A; bacterial 99.3 3E-12 1E-16 120.3 5.8 75 116-196 90-164 (466)
14 2ca6_A RAN GTPase-activating p 99.3 8.6E-14 2.9E-18 127.6 -4.9 235 116-363 32-315 (386)
15 1o6v_A Internalin A; bacterial 99.2 3.9E-12 1.3E-16 119.5 5.4 220 115-362 67-298 (466)
16 1ogq_A PGIP-2, polygalacturona 99.2 3.4E-13 1.2E-17 120.0 -2.8 220 116-362 76-302 (313)
17 2id5_A Lingo-1, leucine rich r 99.2 9.7E-13 3.3E-17 124.0 -0.5 19 289-307 242-260 (477)
18 2id5_A Lingo-1, leucine rich r 99.2 1E-12 3.4E-17 123.9 -0.8 222 117-362 105-331 (477)
19 3o6n_A APL1; leucine-rich repe 99.2 5.1E-12 1.7E-16 115.9 3.5 104 239-363 226-330 (390)
20 1xku_A Decorin; proteoglycan, 99.2 5.4E-12 1.9E-16 113.0 3.5 223 116-362 76-330 (330)
21 3o6n_A APL1; leucine-rich repe 99.2 4.9E-12 1.7E-16 116.0 2.8 122 213-363 227-351 (390)
22 3zyi_A Leucine-rich repeat-con 99.2 3.8E-13 1.3E-17 126.0 -4.8 81 117-199 76-158 (452)
23 3o53_A Protein LRIM1, AGAP0063 99.2 7.1E-13 2.4E-17 118.1 -2.9 210 116-359 34-270 (317)
24 3v47_A TOLL-like receptor 5B a 99.2 9.7E-13 3.3E-17 123.2 -2.1 67 289-363 341-407 (455)
25 3bz5_A Internalin-J, INLJ; leu 99.2 9.5E-12 3.2E-16 116.4 4.6 199 116-360 64-263 (457)
26 3t6q_A CD180 antigen; protein- 99.2 5.2E-13 1.8E-17 129.7 -5.2 81 117-199 279-361 (606)
27 3zyj_A Leucine-rich repeat-con 99.2 4.2E-13 1.4E-17 125.2 -5.9 206 116-349 88-306 (440)
28 3oja_A Leucine-rich immune mol 99.1 1.2E-12 4.2E-17 123.5 -3.2 219 117-358 35-269 (487)
29 3o53_A Protein LRIM1, AGAP0063 99.1 5.4E-12 1.8E-16 112.4 1.0 189 139-362 32-225 (317)
30 2z66_A Variable lymphocyte rec 99.1 1.4E-12 4.8E-17 115.5 -2.9 220 116-362 28-259 (306)
31 3oja_A Leucine-rich immune mol 99.1 7.8E-12 2.7E-16 118.0 1.8 189 139-362 32-225 (487)
32 1z7x_W Ribonuclease inhibitor; 99.1 7E-13 2.4E-17 124.3 -5.4 84 116-199 28-124 (461)
33 2z63_A TOLL-like receptor 4, v 99.1 4.8E-12 1.6E-16 121.8 -0.3 224 116-363 282-530 (570)
34 2ft3_A Biglycan; proteoglycan, 99.1 9.2E-12 3.2E-16 111.6 1.5 133 212-362 193-331 (332)
35 3oja_B Anopheles plasmodium-re 99.1 1.1E-11 3.9E-16 120.0 2.3 217 116-362 99-335 (597)
36 1xku_A Decorin; proteoglycan, 99.1 2.3E-12 8E-17 115.4 -2.5 219 116-362 52-274 (330)
37 2z81_A CD282 antigen, TOLL-lik 99.1 1.7E-10 5.8E-15 110.5 10.2 227 116-362 26-262 (549)
38 1ozn_A Reticulon 4 receptor; N 99.1 8.4E-12 2.9E-16 109.4 1.0 129 116-251 32-165 (285)
39 3vq2_A TLR4, TOLL-like recepto 99.1 1.8E-12 6.1E-17 125.9 -3.7 127 139-268 326-456 (606)
40 3oja_B Anopheles plasmodium-re 99.1 1.2E-11 4.3E-16 119.7 2.2 223 115-363 74-313 (597)
41 1h6u_A Internalin H; cell adhe 99.1 3.1E-11 1.1E-15 107.0 4.2 166 116-307 63-229 (308)
42 3bz5_A Internalin-J, INLJ; leu 99.1 1.6E-11 5.5E-16 114.8 1.5 203 115-363 41-245 (457)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 3.8E-10 1.3E-14 108.5 11.1 104 116-224 76-181 (562)
44 3v47_A TOLL-like receptor 5B a 99.1 1.4E-11 4.6E-16 115.4 0.9 107 116-224 54-166 (455)
45 3rgz_A Protein brassinosteroid 99.1 2.3E-12 8E-17 128.5 -4.7 219 116-362 100-329 (768)
46 3rgz_A Protein brassinosteroid 99.1 7.7E-12 2.6E-16 124.7 -1.2 219 116-362 126-354 (768)
47 2z7x_B TOLL-like receptor 1, v 99.1 1.2E-10 4E-15 111.0 6.8 66 292-363 321-386 (520)
48 2ca6_A RAN GTPase-activating p 99.1 4.2E-12 1.4E-16 116.3 -3.4 222 131-363 22-286 (386)
49 3rfs_A Internalin B, repeat mo 99.1 5.3E-12 1.8E-16 109.9 -2.6 127 116-250 41-168 (272)
50 2z81_A CD282 antigen, TOLL-lik 99.1 2E-10 7E-15 110.0 7.8 63 238-307 195-263 (549)
51 4ecn_A Leucine-rich repeat pro 99.1 2E-11 6.9E-16 122.1 0.4 106 116-225 548-657 (876)
52 3t6q_A CD180 antigen; protein- 99.0 2.9E-11 9.8E-16 117.4 0.8 105 117-223 58-164 (606)
53 1ogq_A PGIP-2, polygalacturona 99.0 3.2E-12 1.1E-16 113.6 -5.5 221 116-362 50-279 (313)
54 4eco_A Uncharacterized protein 99.0 3.8E-11 1.3E-15 117.1 1.2 223 116-363 206-469 (636)
55 3vq2_A TLR4, TOLL-like recepto 99.0 1.7E-10 5.9E-15 111.9 5.8 62 237-307 326-388 (606)
56 3j0a_A TOLL-like receptor 5; m 99.0 1.4E-10 4.9E-15 116.8 5.3 84 116-200 73-160 (844)
57 1ozn_A Reticulon 4 receptor; N 99.0 1.4E-11 4.8E-16 107.9 -1.8 198 141-362 32-236 (285)
58 2z63_A TOLL-like receptor 4, v 99.0 2.9E-11 9.9E-16 116.4 -0.1 232 117-363 258-506 (570)
59 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 1.6E-10 5.4E-15 73.3 3.2 40 7-46 5-44 (53)
60 2ft3_A Biglycan; proteoglycan, 99.0 1.1E-11 3.9E-16 111.0 -3.4 219 116-362 78-305 (332)
61 2z66_A Variable lymphocyte rec 99.0 1.6E-12 5.5E-17 115.2 -8.8 202 116-337 52-260 (306)
62 1wwl_A Monocyte differentiatio 99.0 1.6E-12 5.5E-17 115.5 -8.9 201 139-363 93-308 (312)
63 4eco_A Uncharacterized protein 99.0 4E-11 1.4E-15 116.9 0.1 150 116-269 305-466 (636)
64 1h6t_A Internalin B; cell adhe 99.0 9E-11 3.1E-15 103.1 2.1 165 140-335 45-210 (291)
65 4ecn_A Leucine-rich repeat pro 99.0 5.2E-11 1.8E-15 119.1 0.5 224 116-363 448-709 (876)
66 2z62_A TOLL-like receptor 4, v 99.0 3.8E-11 1.3E-15 104.6 -0.5 132 116-253 28-163 (276)
67 1z7x_W Ribonuclease inhibitor; 99.0 3E-12 1E-16 120.0 -8.1 245 116-363 3-296 (461)
68 3g06_A SSPH2 (leucine-rich rep 99.0 8.9E-10 3E-14 106.5 8.6 131 116-270 61-191 (622)
69 2z80_A TOLL-like receptor 2, v 99.0 2.1E-10 7.1E-15 103.7 3.9 45 287-337 269-313 (353)
70 3zyj_A Leucine-rich repeat-con 99.0 7.5E-11 2.6E-15 109.9 0.9 224 116-363 64-291 (440)
71 3goz_A Leucine-rich repeat-con 99.0 3.1E-11 1.1E-15 109.5 -1.8 72 287-362 216-295 (362)
72 4ezg_A Putative uncharacterize 99.0 3.7E-10 1.3E-14 93.1 4.8 59 139-200 42-100 (197)
73 1p9a_G Platelet glycoprotein I 99.0 1.9E-11 6.6E-16 107.3 -3.5 191 117-336 11-206 (290)
74 3j0a_A TOLL-like receptor 5; m 99.0 2.1E-10 7.2E-15 115.5 3.4 105 117-224 267-374 (844)
75 4glp_A Monocyte differentiatio 99.0 5E-11 1.7E-15 105.7 -1.1 229 90-363 66-306 (310)
76 3goz_A Leucine-rich repeat-con 98.9 1.9E-11 6.6E-16 110.9 -4.4 112 240-362 139-264 (362)
77 2o6q_A Variable lymphocyte rec 98.9 2.7E-10 9.2E-15 98.9 2.2 175 141-336 37-216 (270)
78 2o6q_A Variable lymphocyte rec 98.9 9.1E-11 3.1E-15 101.9 -1.1 199 141-363 16-217 (270)
79 3zyi_A Leucine-rich repeat-con 98.9 2.5E-10 8.5E-15 106.7 1.6 206 116-348 99-316 (452)
80 1ziw_A TOLL-like receptor 3; i 98.9 7E-11 2.4E-15 116.2 -2.3 39 161-199 403-441 (680)
81 1m9s_A Internalin B; cell inva 98.9 1.6E-10 5.3E-15 111.6 -0.2 165 140-336 42-208 (605)
82 3g06_A SSPH2 (leucine-rich rep 98.9 1.5E-09 5E-14 105.0 6.0 217 88-363 61-296 (622)
83 3rfs_A Internalin B, repeat mo 98.9 1.5E-10 5.2E-15 100.6 -0.9 124 140-270 40-167 (272)
84 1wwl_A Monocyte differentiatio 98.9 1.3E-10 4.6E-15 103.1 -1.6 209 132-363 56-286 (312)
85 2z7x_B TOLL-like receptor 1, v 98.9 3E-09 1E-13 101.2 7.1 213 141-362 21-258 (520)
86 1ziw_A TOLL-like receptor 3; i 98.9 2.5E-10 8.5E-15 112.3 -0.4 206 134-363 398-621 (680)
87 4ezg_A Putative uncharacterize 98.8 4.5E-10 1.5E-14 92.7 0.8 126 116-251 44-171 (197)
88 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 8.7E-10 3E-14 106.0 1.6 77 116-200 100-181 (562)
89 2xwt_C Thyrotropin receptor; s 98.8 4.2E-09 1.4E-13 89.5 5.4 101 117-222 32-140 (239)
90 2ell_A Acidic leucine-rich nuc 98.8 5.3E-10 1.8E-14 89.7 -0.8 134 116-251 24-159 (168)
91 1h6t_A Internalin B; cell adhe 98.8 3.1E-09 1E-13 93.3 3.6 166 116-307 46-212 (291)
92 2xwt_C Thyrotropin receptor; s 98.8 2E-09 6.7E-14 91.6 2.0 192 141-361 31-236 (239)
93 1p9a_G Platelet glycoprotein I 98.8 9.2E-10 3.2E-14 96.6 -0.1 198 137-362 6-206 (290)
94 1xeu_A Internalin C; cellular 98.7 2.4E-09 8.2E-14 92.5 1.8 147 137-307 37-184 (263)
95 2je0_A Acidic leucine-rich nuc 98.7 5.2E-10 1.8E-14 87.8 -3.9 108 116-225 17-126 (149)
96 1m9s_A Internalin B; cell inva 98.7 3E-09 1E-13 102.6 0.5 166 116-307 43-209 (605)
97 1jl5_A Outer protein YOPM; leu 98.7 1.5E-08 5.1E-13 94.6 5.0 79 137-224 191-269 (454)
98 3cvr_A Invasion plasmid antige 98.7 5.3E-09 1.8E-13 99.9 1.9 185 115-337 58-242 (571)
99 1xeu_A Internalin C; cellular 98.7 6.2E-10 2.1E-14 96.2 -4.2 166 139-336 17-183 (263)
100 4glp_A Monocyte differentiatio 98.6 2.1E-08 7.3E-13 88.7 4.2 177 116-307 117-306 (310)
101 1jl5_A Outer protein YOPM; leu 98.6 7.4E-09 2.5E-13 96.7 1.2 75 141-224 215-289 (454)
102 3cvr_A Invasion plasmid antige 98.6 5.2E-08 1.8E-12 93.1 6.9 156 116-307 80-242 (571)
103 3m19_A Variable lymphocyte rec 98.6 1.5E-08 5.3E-13 86.7 2.3 151 116-272 35-191 (251)
104 3m19_A Variable lymphocyte rec 98.6 8.9E-09 3E-13 88.2 0.4 126 118-251 16-143 (251)
105 2ra8_A Uncharacterized protein 98.5 4.3E-08 1.5E-12 88.4 3.8 153 179-350 163-331 (362)
106 4g8a_A TOLL-like receptor 4; l 98.5 1.5E-07 5.1E-12 91.4 7.4 130 116-251 52-185 (635)
107 2ra8_A Uncharacterized protein 98.5 9.7E-08 3.3E-12 86.0 4.5 176 74-250 92-290 (362)
108 2ell_A Acidic leucine-rich nuc 98.4 6.7E-08 2.3E-12 77.2 2.1 82 140-224 23-107 (168)
109 4ay9_X Follicle-stimulating ho 98.4 2.9E-07 9.9E-12 82.8 5.4 217 116-358 30-253 (350)
110 1ds9_A Outer arm dynein; leuci 98.3 5E-08 1.7E-12 80.3 -0.4 87 132-223 39-126 (198)
111 3un9_A NLR family member X1; l 98.3 1.5E-08 5.2E-13 91.9 -4.0 57 287-348 203-261 (372)
112 1a9n_A U2A', U2A'; complex (nu 98.3 2.4E-08 8.2E-13 80.6 -3.0 32 237-268 111-148 (176)
113 3e6j_A Variable lymphocyte rec 98.3 2.5E-07 8.6E-12 77.9 3.0 125 141-271 40-170 (229)
114 3e4g_A ATP synthase subunit S, 98.3 1E-07 3.4E-12 76.0 0.1 68 132-199 52-125 (176)
115 2v9t_B SLIT homolog 2 protein 98.3 2.4E-07 8.2E-12 77.6 2.4 128 141-272 32-164 (220)
116 3e6j_A Variable lymphocyte rec 98.3 2.4E-07 8.3E-12 78.1 2.3 130 116-251 40-171 (229)
117 2z62_A TOLL-like receptor 4, v 98.3 1.1E-07 3.9E-12 82.4 0.1 174 116-307 52-236 (276)
118 1a9n_A U2A', U2A'; complex (nu 98.3 5.6E-08 1.9E-12 78.4 -1.8 133 137-307 15-152 (176)
119 2je0_A Acidic leucine-rich nuc 98.2 1E-07 3.5E-12 74.5 -0.5 80 140-223 16-99 (149)
120 2v70_A SLIT-2, SLIT homolog 2 98.2 3.2E-07 1.1E-11 76.8 1.9 127 142-272 33-165 (220)
121 2o6s_A Variable lymphocyte rec 98.2 3.8E-07 1.3E-11 75.5 2.3 60 139-199 50-111 (208)
122 2e31_A FBS1, F-box only protei 98.2 6.2E-07 2.1E-11 77.3 3.5 36 9-44 49-85 (297)
123 2o6s_A Variable lymphocyte rec 98.2 5.1E-07 1.7E-11 74.8 2.7 126 140-270 27-158 (208)
124 2v9t_B SLIT homolog 2 protein 98.2 4.8E-07 1.6E-11 75.7 1.7 128 116-250 32-163 (220)
125 3l2o_B F-box only protein 4; s 98.1 5.2E-07 1.8E-11 76.9 1.2 34 10-43 4-37 (312)
126 3e4g_A ATP synthase subunit S, 98.1 9.9E-07 3.4E-11 70.2 2.3 81 117-199 62-150 (176)
127 2v70_A SLIT-2, SLIT homolog 2 98.1 9E-07 3.1E-11 74.0 2.1 130 116-250 32-164 (220)
128 2xot_A Amphoterin-induced prot 98.1 3.7E-07 1.3E-11 82.5 -0.8 83 141-224 39-124 (361)
129 2xot_A Amphoterin-induced prot 98.0 1.1E-06 3.8E-11 79.3 1.6 153 116-272 39-201 (361)
130 4g8a_A TOLL-like receptor 4; l 98.0 2.8E-07 9.7E-12 89.4 -3.1 171 160-349 417-594 (635)
131 3un9_A NLR family member X1; l 98.0 9.4E-08 3.2E-12 86.7 -7.1 165 114-307 70-251 (372)
132 3v7d_B Cell division control p 97.9 2.7E-06 9.1E-11 79.2 2.1 41 6-46 10-50 (464)
133 2wfh_A SLIT homolog 2 protein 97.9 3.1E-06 1.1E-10 69.1 1.6 80 117-199 32-113 (193)
134 1dce_A Protein (RAB geranylger 97.9 2.1E-06 7.2E-11 82.2 0.2 79 117-201 442-521 (567)
135 4ay9_X Follicle-stimulating ho 97.9 3.2E-06 1.1E-10 75.9 1.3 182 132-336 23-213 (350)
136 1w8a_A SLIT protein; signaling 97.8 3.7E-06 1.3E-10 68.6 1.4 88 132-223 22-113 (192)
137 2o6r_A Variable lymphocyte rec 97.8 6.2E-06 2.1E-10 66.2 2.1 106 141-251 28-136 (177)
138 2o6r_A Variable lymphocyte rec 97.8 8.4E-06 2.9E-10 65.5 2.7 121 144-270 10-134 (177)
139 2ovr_B FBW7, F-BOX/WD repeat p 97.8 8.9E-06 3E-10 75.3 3.1 42 3-44 11-52 (445)
140 1dce_A Protein (RAB geranylger 97.7 5.7E-06 2E-10 79.2 0.9 78 142-224 442-520 (567)
141 1p22_A F-BOX/WD-repeat protein 97.7 9.3E-06 3.2E-10 75.0 2.0 40 4-43 4-47 (435)
142 2wfh_A SLIT homolog 2 protein 97.7 1.4E-05 4.6E-10 65.3 2.1 60 141-201 31-91 (193)
143 3sb4_A Hypothetical leucine ri 97.7 3.5E-05 1.2E-09 68.4 4.8 100 238-358 225-328 (329)
144 1w8a_A SLIT protein; signaling 97.6 8.2E-06 2.8E-10 66.5 0.4 82 117-201 30-115 (192)
145 3sb4_A Hypothetical leucine ri 97.5 4.2E-06 1.4E-10 74.5 -3.7 83 259-362 225-308 (329)
146 3g39_A Variable lymphocyte rec 97.4 4.6E-05 1.6E-09 60.7 2.3 61 141-202 30-92 (170)
147 2r9u_A Variable lymphocyte rec 97.4 5.6E-05 1.9E-09 60.5 2.3 68 132-202 26-95 (174)
148 1io0_A Tropomodulin; LRR prote 97.3 5.9E-06 2E-10 67.0 -4.2 96 104-199 22-134 (185)
149 1ds9_A Outer arm dynein; leuci 97.3 4.1E-05 1.4E-09 62.6 0.5 103 115-224 47-152 (198)
150 4b8c_D Glucose-repressible alc 97.3 2E-05 6.8E-10 77.8 -1.7 105 116-225 224-329 (727)
151 4b8c_D Glucose-repressible alc 97.3 1.5E-05 5E-10 78.8 -2.7 113 133-252 216-329 (727)
152 2r9u_A Variable lymphocyte rec 97.3 0.00016 5.6E-09 57.7 3.7 84 116-202 33-119 (174)
153 3g39_A Variable lymphocyte rec 97.2 0.00021 7.1E-09 56.9 3.9 84 116-202 30-116 (170)
154 2ifg_A High affinity nerve gro 97.2 7.6E-05 2.6E-09 66.7 0.6 91 131-224 22-115 (347)
155 1io0_A Tropomodulin; LRR prote 96.8 0.00059 2E-08 55.0 2.9 74 286-362 84-162 (185)
156 4fdw_A Leucine rich hypothetic 96.8 0.0012 3.9E-08 60.3 4.9 166 137-335 176-355 (401)
157 4fdw_A Leucine rich hypothetic 96.4 0.00015 5.1E-09 66.2 -3.9 196 142-362 158-356 (401)
158 3rw6_A Nuclear RNA export fact 95.4 0.0032 1.1E-07 53.7 0.7 79 116-194 170-257 (267)
159 2ifg_A High affinity nerve gro 95.1 0.0079 2.7E-07 53.4 2.2 80 117-200 32-115 (347)
160 3rw6_A Nuclear RNA export fact 94.1 0.013 4.6E-07 49.8 1.1 63 161-224 168-232 (267)
161 1pgv_A TMD-1, tropomodulin TMD 92.6 0.0042 1.5E-07 50.2 -4.2 96 102-197 25-135 (197)
162 4fs7_A Uncharacterized protein 92.4 0.0036 1.2E-07 56.9 -5.6 54 116-172 162-217 (394)
163 1pgv_A TMD-1, tropomodulin TMD 91.7 0.081 2.8E-06 42.6 2.3 124 74-199 28-168 (197)
164 4gt6_A Cell surface protein; l 87.8 1.1 3.9E-05 40.1 7.1 34 138-171 134-168 (394)
165 4gt6_A Cell surface protein; l 72.4 1.8 6.3E-05 38.7 2.6 100 137-249 261-367 (394)
166 3rfe_A Platelet glycoprotein I 69.2 2.9 9.8E-05 30.9 2.6 38 141-178 31-70 (130)
167 4fs7_A Uncharacterized protein 61.2 6.1 0.00021 35.2 3.7 82 136-222 292-376 (394)
168 4h09_A Hypothetical leucine ri 50.6 7.1 0.00024 34.5 2.2 79 137-221 259-342 (379)
169 3rfe_A Platelet glycoprotein I 47.2 7 0.00024 28.7 1.4 54 145-200 12-67 (130)
170 4h09_A Hypothetical leucine ri 44.2 10 0.00035 33.4 2.2 104 137-248 213-319 (379)
171 2lz0_A Uncharacterized protein 30.8 38 0.0013 23.4 3.0 12 139-150 18-29 (100)
172 2kwv_A RAD30 homolog B, DNA po 29.3 49 0.0017 19.1 2.6 16 9-24 19-34 (48)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=5.6e-24 Score=206.46 Aligned_cols=333 Identities=11% Similarity=0.057 Sum_probs=160.9
Q ss_pred CCCcccC----CCChHHHHHHhcCC-ChhHhhhhhhhccchhhhhccCcceEEecCc-chhhh----------ccccc--
Q 017981 6 STEDRIS----CLPNAILCHILSFL-PTKYAVATCVLSSTWKLVWTSLPNLCFDDRL-CLEFQ----------RNLDL-- 67 (363)
Q Consensus 6 ~~~d~i~----~LPd~il~~Ils~L-~~~d~~~~~~vskrWr~l~~~~~~l~~~~~~-~~~~~----------~~~~~-- 67 (363)
++.|+++ +||||+|.+||+|| +.+|+++++.|||||++++.... ..+.... +.... +...-
T Consensus 4 ~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 82 (592)
T 3ogk_B 4 PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETR-EHVTMALCYTATPDRLSRRFPNLRSLKLKG 82 (592)
T ss_dssp --------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHC-CEEEESCGGGSCHHHHHHHCTTCSEEEEEC
T ss_pred hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccc-cEEEEeeccccChHHHHHhCCCCeEEEecC
Confidence 3456776 89999999999999 89999999999999998753322 1221111 00000 00000
Q ss_pred ---------chhhhhHH-HHHHHHHHhcCCCCcceEEEEecCCCChhhHHHHHHHHHhCCceEEEEEcCCC-ccccCCcc
Q 017981 68 ---------STVASTRF-ENFVHRVLLSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDD-ECIELPHC 136 (363)
Q Consensus 68 ---------~~~~~~~~-~~~i~~~l~~~~~~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~-~~~~l~~~ 136 (363)
.......+ ...+..+.. .-+.++.+.+.... . ......|+......++++|++..+.. ....++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~L~~L~L~~~~-i-~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~ 159 (592)
T 3ogk_B 83 KPRAAMFNLIPENWGGYVTPWVTEISN-NLRQLKSVHFRRMI-V-SDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSI 159 (592)
T ss_dssp SCGGGGGTCSCTTSCCBCHHHHHHHHH-HCTTCCEEEEESCB-C-CHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHH
T ss_pred CcchhhcccccccccccchHHHHHHHh-hCCCCCeEEeeccE-e-cHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHH
Confidence 00000000 000111110 11234444444321 1 11122233332223466666654431 11123333
Q ss_pred cccCCcccEEEecccccccCC------CcccCcccceeeeeeEEEc---cchHHHHhccCCccceEEEeeeEeCCCceeE
Q 017981 137 IYTCKTLEVLKLDMNFFIKTP------PTIFFPSAKILHVILNTID---NNFSDWLFSKCPALEDLSIKGYIYGTDSVTL 207 (363)
Q Consensus 137 ~~~~~~L~~L~L~~~~~~~~~------~~~~~~~L~~L~L~~~~~~---~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l 207 (363)
...|++|++|+|++|.+.+.. ....+++|++|+|.++.++ ...+..++.+||+|++|.+.+|...+. ...
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l-~~~ 238 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL-VGF 238 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG-HHH
T ss_pred HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH-HHH
Confidence 335666777777666554221 1125666777777666654 235566666777777777777654332 111
Q ss_pred EEecCCcceEEEEecCCccc-----------------------cCCceEEEEeccCcceEEEeecCCCce----eeecCC
Q 017981 208 NIPSLTLKRLRLELEAPEED-----------------------YITKYKVIIRAPNLEQLYIRDHGPGLY----VVHELH 260 (363)
Q Consensus 208 ~i~~~~L~~L~l~~~~~~~~-----------------------~~~~~~~~~~~p~L~~L~l~~~~~~~~----~~~~~~ 260 (363)
-...++|+.|.+..+..... ......+...+++|++|+++++..... .+..++
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 11224455555443211000 000111112356777777776653321 135667
Q ss_pred CceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeC----------CccccccccccccCCCCCCCCCcceE
Q 017981 261 SLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSS----------GTMFALDRLDYANDHSFPTFPFLNRL 330 (363)
Q Consensus 261 ~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~----------~~~~~~~~l~~~~~~~~~~~~~L~~L 330 (363)
+|+.+.+.... ....+..++..+++|+.|.++. +...+.+.+.. ....+++|++|
T Consensus 319 ~L~~L~L~~~~-----------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~----l~~~~~~L~~L 383 (592)
T 3ogk_B 319 NLEVLETRNVI-----------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA----LAQGCQELEYM 383 (592)
T ss_dssp TCCEEEEEGGG-----------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH----HHHHCTTCSEE
T ss_pred CCCEEeccCcc-----------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH----HHhhCccCeEE
Confidence 77777665111 1122555667778888888873 22211111111 11135678888
Q ss_pred EEEeccCCChHHHHHHHHhCCCCcceEEe
Q 017981 331 EVEGVGACGWLSLAHIFSRMPKLESIVFE 359 (363)
Q Consensus 331 ~l~~~~~~~~~~l~~ll~~~p~L~~L~l~ 359 (363)
++ .+...+..++..+.++||+|++|++.
T Consensus 384 ~l-~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 384 AV-YVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp EE-EESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred Ee-ecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 88 44445777777777778888888875
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=2.3e-23 Score=202.19 Aligned_cols=38 Identities=18% Similarity=0.437 Sum_probs=29.3
Q ss_pred CCcccCCCChHHHHHHhcCCC-hhHhhhhhhhccchhhh
Q 017981 7 TEDRISCLPNAILCHILSFLP-TKYAVATCVLSSTWKLV 44 (363)
Q Consensus 7 ~~d~i~~LPd~il~~Ils~L~-~~d~~~~~~vskrWr~l 44 (363)
+.|+|+.||||||.+||+||| .+|+++++.|||||+++
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 358999999999999999999 99999999999999987
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=5.6e-24 Score=191.91 Aligned_cols=283 Identities=13% Similarity=0.069 Sum_probs=185.3
Q ss_pred CCcccCCCChHHHHHHhcCCChhHhhhhhhhccchhhhhcc---CcceEEecCcchhhhcccccchhhhhHHHHHHHHHH
Q 017981 7 TEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTS---LPNLCFDDRLCLEFQRNLDLSTVASTRFENFVHRVL 83 (363)
Q Consensus 7 ~~d~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 83 (363)
+...|++||||++.+||+||+.+|+++++.|||+|+++... +..+++.....
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~------------------------- 59 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL------------------------- 59 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC-------------------------
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC-------------------------
Confidence 34578999999999999999999999999999999987532 11222221110
Q ss_pred hcCCCCcceEEEEecCCCChhhHHHHHHHHHhCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccC---CCcc
Q 017981 84 LSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT---PPTI 160 (363)
Q Consensus 84 ~~~~~~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~---~~~~ 160 (363)
. +..+.....++++.+.+..+.. ...+..++.+++|++|+|++|.+... ....
T Consensus 60 ------------------~----~~~~~~~~~~~l~~L~l~~n~l--~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~ 115 (336)
T 2ast_B 60 ------------------H----PDVTGRLLSQGVIAFRCPRSFM--DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS 115 (336)
T ss_dssp ------------------C----HHHHHHHHHTTCSEEECTTCEE--CSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT
T ss_pred ------------------C----HHHHHhhhhccceEEEcCCccc--cccchhhccCCCCCEEEccCCCcCHHHHHHHHh
Confidence 1 1123333446778777754332 22334467899999999999987532 2345
Q ss_pred cCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeE-eCC--CceeEEEecCCcceEEEEec-CCccccCCceEEEE
Q 017981 161 FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI-YGT--DSVTLNIPSLTLKRLRLELE-APEEDYITKYKVII 236 (363)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~-~~~--~~~~l~i~~~~L~~L~l~~~-~~~~~~~~~~~~~~ 236 (363)
.+++|++|+|.++.+++.... .+..|++|++|.+.+|. +.+ . ......+++|++|++.+| ..... .......
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~ 191 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFAL-QTLLSSCSRLDELNLSWCFDFTEK--HVQVAVA 191 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHH-HHHHHHCTTCCEEECCCCTTCCHH--HHHHHHH
T ss_pred hCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHH-HHHHhcCCCCCEEcCCCCCCcChH--HHHHHHH
Confidence 789999999999987665433 45679999999999984 332 1 111223589999999998 54321 1122235
Q ss_pred ecc-CcceEEEeecC--CC----ceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcccc
Q 017981 237 RAP-NLEQLYIRDHG--PG----LYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFA 309 (363)
Q Consensus 237 ~~p-~L~~L~l~~~~--~~----~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~ 309 (363)
.+| +|++|+++++. .. ...+.++++|+.+++..+... .+.....+..+++|+.|.++++...+
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l----------~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML----------KNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC----------CGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC----------CHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 578 99999999873 32 123467889998888655411 01123356778999999998874322
Q ss_pred ccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981 310 LDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 310 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
.+. .. .+..+++|+.|++.++ .+..++..+.+++|+|+ ++.++
T Consensus 262 ~~~----~~-~l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~---l~~n~ 304 (336)
T 2ast_B 262 PET----LL-ELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ---INCSH 304 (336)
T ss_dssp GGG----GG-GGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE---ESCCC
T ss_pred HHH----HH-HHhcCCCCCEEeccCc--cCHHHHHHHHhhCcceE---Eeccc
Confidence 121 11 2345778999999888 56666777777677665 55443
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.45 E-value=2.9e-14 Score=127.78 Aligned_cols=220 Identities=17% Similarity=0.159 Sum_probs=150.0
Q ss_pred hCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981 115 MRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (363)
Q Consensus 115 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (363)
..+++.|++..+... .+|..++.+++|++|+|++|.+...| ....+++|++|+|.++.+. .+..-+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch--hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEE
Confidence 468999999877653 78888888999999999999887544 3568899999999999876 233447789999999
Q ss_pred EEeeeEeCC-CceeEE--------EecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce--eeecCCCc
Q 017981 194 SIKGYIYGT-DSVTLN--------IPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY--VVHELHSL 262 (363)
Q Consensus 194 ~L~~c~~~~-~~~~l~--------i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~--~~~~~~~L 262 (363)
.+.+|...+ ....+. -..++|+.|++.+|..... ......+++|++|+++++..... .+..+++|
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l----p~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L 231 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL----PASIANLQNLKSLKIRNSPLSALGPAIHHLPKL 231 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC----CGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc----hHhhcCCCCCCEEEccCCCCCcCchhhccCCCC
Confidence 999986322 111111 1368899999999876422 11123568899999998766543 35678888
Q ss_pred eEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHH
Q 017981 263 TKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLS 342 (363)
Q Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 342 (363)
+.+++..+.... .....+..+++|+.|+++++... ..+ .. .+..+++|+.|++++|...+ .
T Consensus 232 ~~L~Ls~n~~~~-----------~~p~~~~~l~~L~~L~L~~n~~~--~~~---p~-~~~~l~~L~~L~L~~n~~~~--~ 292 (328)
T 4fcg_A 232 EELDLRGCTALR-----------NYPPIFGGRAPLKRLILKDCSNL--LTL---PL-DIHRLTQLEKLDLRGCVNLS--R 292 (328)
T ss_dssp CEEECTTCTTCC-----------BCCCCTTCCCCCCEEECTTCTTC--CBC---CT-TGGGCTTCCEEECTTCTTCC--C
T ss_pred CEEECcCCcchh-----------hhHHHhcCCCCCCEEECCCCCch--hhc---ch-hhhcCCCCCEEeCCCCCchh--h
Confidence 888876543211 02233667888999999886541 111 11 33467788888888875432 2
Q ss_pred HHHHHHhCCCCcceEEeee
Q 017981 343 LAHIFSRMPKLESIVFEEV 361 (363)
Q Consensus 343 l~~ll~~~p~L~~L~l~~~ 361 (363)
++.-+.++|+|+.+.+..+
T Consensus 293 iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCGGGGGSCTTCEEECCGG
T ss_pred ccHHHhhccCceEEeCCHH
Confidence 4556778888888876543
No 5
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.34 E-value=5.8e-12 Score=113.91 Aligned_cols=224 Identities=15% Similarity=0.134 Sum_probs=145.1
Q ss_pred CCceEEEEEcCCCccccCCc-ccccCCcccEEEecccccccC-C-CcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981 116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKT-P-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (363)
+++++|+++.+... .++. .+..+++|++|+|++|.+... + .+..+++|++|+|.++.+++-. ...+.++++|++
T Consensus 52 ~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRIT--YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSE
T ss_pred ccCcEEECCCCcCc--ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCE
Confidence 47899998766542 3444 567799999999999988754 2 3668999999999999886542 344788999999
Q ss_pred EEEeeeEeCCCcee-EEE-ecCCcceEEEEecC-CccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEE
Q 017981 193 LSIKGYIYGTDSVT-LNI-PSLTLKRLRLELEA-PEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAV 266 (363)
Q Consensus 193 L~L~~c~~~~~~~~-l~i-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~ 266 (363)
|.+.+|..... .. -.+ ..++|+.|++.+|. ....... ....+++|++|+++++..... .+..+++|+.+.
T Consensus 129 L~L~~n~l~~l-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 129 LNLLGNPYKTL-GETSLFSHLTKLQILRVGNMDTFTKIQRK---DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp EECTTCCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred EECCCCCCccc-CchhhhccCCCCcEEECCCCccccccCHH---HccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence 99999886554 22 122 35899999999984 2211000 113468899999999876544 356678888888
Q ss_pred EeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcccccccccc-ccCCCCCCCCCcceEEEEeccCCChH---H
Q 017981 267 VDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDY-ANDHSFPTFPFLNRLEVEGVGACGWL---S 342 (363)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~---~ 342 (363)
+..... ......++..+++++.|+++++.+ ..+.. ... .......++.+++....- ... .
T Consensus 205 l~~n~l-----------~~~~~~~~~~~~~L~~L~L~~n~l---~~~~~~~l~-~~~~~~~l~~l~L~~~~l-~~~~l~~ 268 (353)
T 2z80_A 205 LHMKQH-----------ILLLEIFVDVTSSVECLELRDTDL---DTFHFSELS-TGETNSLIKKFTFRNVKI-TDESLFQ 268 (353)
T ss_dssp EECSCS-----------TTHHHHHHHHTTTEEEEEEESCBC---TTCCCC-------CCCCCCEEEEESCBC-CHHHHHH
T ss_pred CCCCcc-----------ccchhhhhhhcccccEEECCCCcc---ccccccccc-cccccchhhccccccccc-cCcchhh
Confidence 865432 111344566789999999999876 33221 111 112234455566655432 222 3
Q ss_pred HHHHHHhCCCCcceEEeeec
Q 017981 343 LAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 343 l~~ll~~~p~L~~L~l~~~~ 362 (363)
+...+..+++|+.|+++.++
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSC
T ss_pred hHHHHhcccCCCEEECCCCC
Confidence 34445666666666666554
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.33 E-value=5e-13 Score=129.37 Aligned_cols=194 Identities=18% Similarity=0.119 Sum_probs=98.7
Q ss_pred cCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEe----------cCCccccCC
Q 017981 161 FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLEL----------EAPEEDYIT 230 (363)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~----------~~~~~~~~~ 230 (363)
.+++|++|+|.+|.+++..+..++..||+|++|.+..+..+.....+.-.+++|++|++.+ |...+. ..
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~ 369 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RG 369 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HH
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH-HH
Confidence 4667777777777765556666677777777777764321110011111246677777763 322111 00
Q ss_pred ceEEEEeccCcceEEEeecCCCcee---e-ecCCCceEEEEeeeeceeccCCC--------------------------c
Q 017981 231 KYKVIIRAPNLEQLYIRDHGPGLYV---V-HELHSLTKAVVDYGIECILDYDS--------------------------P 280 (363)
Q Consensus 231 ~~~~~~~~p~L~~L~l~~~~~~~~~---~-~~~~~L~~~~l~~~~~~~~~~~~--------------------------~ 280 (363)
...+...+|+|++|.++.+...... + ..+++|+.+.+....... .+. .
T Consensus 370 ~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n--~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 370 LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE--RITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS--CCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred HHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc--cccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 1111123456666666444332211 1 125555555554221000 000 0
Q ss_pred hhhHHH-HHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEe
Q 017981 281 EDVAQA-VVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFE 359 (363)
Q Consensus 281 ~~~~~~-~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~ 359 (363)
+...+. +..+...+++|+.|.++.+.+.+ ..+.. .+..+++|++|++++|. .+..++..+...+|+|+.|+++
T Consensus 448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~----~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls 521 (592)
T 3ogk_B 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESD-EGLME----FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQ 521 (592)
T ss_dssp GGCCHHHHHHHHHSCTTCCEEEECSCCSSH-HHHHH----HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEE
T ss_pred CCccHHHHHHHHHhCccceEeeccCCCCCH-HHHHH----HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECc
Confidence 011111 33333446666666666554311 11111 12245678888888887 4777788888888888888888
Q ss_pred eecC
Q 017981 360 EVRM 363 (363)
Q Consensus 360 ~~~~ 363 (363)
.+++
T Consensus 522 ~n~i 525 (592)
T 3ogk_B 522 GYRA 525 (592)
T ss_dssp SCBC
T ss_pred CCcC
Confidence 7763
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.31 E-value=3e-13 Score=122.01 Aligned_cols=246 Identities=13% Similarity=0.130 Sum_probs=133.2
Q ss_pred CCcceEEEEecCCCChhhHHHHHHHHHhCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccce
Q 017981 88 GNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKI 167 (363)
Q Consensus 88 ~~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~ 167 (363)
..++.+.+....-..... ....++++.|++..+... .+ +.+..+++|++|++++|.+...+....+++|++
T Consensus 66 ~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~i~--~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~ 136 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKIT--DI-SALQNLTNLRELYLNEDNISDISPLANLTKMYS 136 (347)
T ss_dssp TTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCC--CC-GGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCE
T ss_pred CCccEEEccCCccccchh------hhcCCcCCEEEccCCccc--Cc-hHHcCCCcCCEEECcCCcccCchhhccCCceeE
Confidence 456667666543211111 112247777777665432 22 245667888888888887775555667888888
Q ss_pred eeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEe
Q 017981 168 LHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIR 247 (363)
Q Consensus 168 L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 247 (363)
|++.++..... +.. +..+++|++|.+.+|...+. .. -...++|+.|++.+|....... ...+++|+.|.++
T Consensus 137 L~l~~n~~~~~-~~~-~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 137 LNLGANHNLSD-LSP-LSNMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSLNYNQIEDISP-----LASLTSLHYFTAY 207 (347)
T ss_dssp EECTTCTTCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECTTSCCCCCGG-----GGGCTTCCEEECC
T ss_pred EECCCCCCccc-ccc-hhhCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEccCCccccccc-----ccCCCccceeecc
Confidence 88887743333 111 67788888888888775554 22 1124788899888886543211 1233445555555
Q ss_pred ecCCCcee-eecCCCceEEEEeeeeceecc-----------CCCchhhHHHHHHHhhccCcceEEEEeCCcccccccccc
Q 017981 248 DHGPGLYV-VHELHSLTKAVVDYGIECILD-----------YDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDY 315 (363)
Q Consensus 248 ~~~~~~~~-~~~~~~L~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~ 315 (363)
++...... +..+++|+.+.+..+...... ....+... -...+..+++|+.|.++++.+ ..+.
T Consensus 208 ~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l---~~~~- 281 (347)
T 4fmz_A 208 VNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQIS--DINAVKDLTKLKMLNVGSNQI---SDIS- 281 (347)
T ss_dssp SSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC--CCGGGTTCTTCCEEECCSSCC---CCCG-
T ss_pred cCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccC--CChhHhcCCCcCEEEccCCcc---CCCh-
Confidence 44332211 334444444444332210000 00000000 002245556666666666554 2221
Q ss_pred ccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981 316 ANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 316 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
.+..+++|+.|++..+.- .. .....+..+|+|+.|+++.+++
T Consensus 282 ----~~~~l~~L~~L~L~~n~l-~~-~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 282 ----VLNNLSQLNSLFLNNNQL-GN-EDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp ----GGGGCTTCSEEECCSSCC-CG-GGHHHHHTCTTCSEEECCSSSC
T ss_pred ----hhcCCCCCCEEECcCCcC-CC-cChhHhhccccCCEEEccCCcc
Confidence 233556788888877754 22 2334567788899988887754
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.31 E-value=4.3e-13 Score=121.06 Aligned_cols=214 Identities=14% Similarity=0.122 Sum_probs=118.1
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEeccccccc-CCCcccCcccceeeeeeEEEccchH--------------
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIK-TPPTIFFPSAKILHVILNTIDNNFS-------------- 180 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l-------------- 180 (363)
+++++|++..+... .++. +..+++|++|++++|.... .+....+++|+.|++.++.+.+..-
T Consensus 110 ~~L~~L~l~~n~i~--~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 110 TNLRELYLNEDNIS--DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNY 186 (347)
T ss_dssp TTCSEEECTTSCCC--CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTT
T ss_pred CcCCEEECcCCccc--Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccC
Confidence 46777777554421 2222 4445666666666553221 2223345555555555544333210
Q ss_pred ------HHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce
Q 017981 181 ------DWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY 254 (363)
Q Consensus 181 ------~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~ 254 (363)
.. +..+++|+.|.+.+|...+. .. ....++|+.|++.+|....... ...+++|++|+++++.....
T Consensus 187 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 187 NQIEDISP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITDLSP-----LANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCC
T ss_pred Cccccccc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCCCcc-----hhcCCCCCEEECCCCccCCC
Confidence 01 33444444444444443322 11 1123567777776665433211 23457777777777655433
Q ss_pred -eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEE
Q 017981 255 -VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVE 333 (363)
Q Consensus 255 -~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~ 333 (363)
.+..+++|+.+.+..+.-.. + ..+..+++|+.|+++++.+ ..... + .+..+++|+.|+++
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~------------~-~~~~~l~~L~~L~L~~n~l---~~~~~--~-~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISD------------I-SVLNNLSQLNSLFLNNNQL---GNEDM--E-VIGGLTNLTTLFLS 319 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCC------------C-GGGGGCTTCSEEECCSSCC---CGGGH--H-HHHTCTTCSEEECC
T ss_pred hhHhcCCCcCEEEccCCccCC------------C-hhhcCCCCCCEEECcCCcC---CCcCh--h-HhhccccCCEEEcc
Confidence 24566777777765443211 1 3478899999999999876 32221 1 23357789999999
Q ss_pred eccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981 334 GVGACGWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 334 ~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
++.-.+... +..+|+|+.|++..+++
T Consensus 320 ~n~l~~~~~----~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 320 QNHITDIRP----LASLSKMDSADFANQVI 345 (347)
T ss_dssp SSSCCCCGG----GGGCTTCSEESSSCC--
T ss_pred CCccccccC----hhhhhccceeehhhhcc
Confidence 987533222 78899999999998864
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.30 E-value=1.9e-12 Score=115.88 Aligned_cols=200 Identities=13% Similarity=0.046 Sum_probs=141.6
Q ss_pred CCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEE
Q 017981 140 CKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLR 218 (363)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~ 218 (363)
.+++++|+|+++.+...| ....+++|++|+|.++.+. .+...+..+++|++|+|.+|.+..+ ..--...++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccC-cHHHhcCcCCCEEE
Confidence 478999999999888654 3567999999999999876 2334467899999999999976544 11111248999999
Q ss_pred EEecCCccccCCceE------EEEeccCcceEEEeecCCCce--eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHH
Q 017981 219 LELEAPEEDYITKYK------VIIRAPNLEQLYIRDHGPGLY--VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDM 290 (363)
Q Consensus 219 l~~~~~~~~~~~~~~------~~~~~p~L~~L~l~~~~~~~~--~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 290 (363)
+.+|........... ....+++|++|+++++....+ .+..+++|+.+.+..+.... +...
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~------------l~~~ 224 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA------------LGPA 224 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC------------CCGG
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc------------Cchh
Confidence 999865432111111 124589999999999876533 36788999999997654311 2224
Q ss_pred hhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981 291 LRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 291 l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
+..+++|+.|+++++.. .. .... .+..+++|+.|++..|.... .++.-+.++++|+.|+|+.++
T Consensus 225 l~~l~~L~~L~Ls~n~~---~~--~~p~-~~~~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTA---LR--NYPP-IFGGRAPLKRLILKDCSNLL--TLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp GGGCTTCCEEECTTCTT---CC--BCCC-CTTCCCCCCEEECTTCTTCC--BCCTTGGGCTTCCEEECTTCT
T ss_pred hccCCCCCEEECcCCcc---hh--hhHH-HhcCCCCCCEEECCCCCchh--hcchhhhcCCCCCEEeCCCCC
Confidence 77899999999998755 11 1112 45567889999999875422 133346889999999998865
No 10
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.29 E-value=5.3e-13 Score=129.23 Aligned_cols=193 Identities=18% Similarity=0.172 Sum_probs=95.7
Q ss_pred cCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecC--------CccccCCce
Q 017981 161 FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEA--------PEEDYITKY 232 (363)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~--------~~~~~~~~~ 232 (363)
.+++|++|+|.++.+++.++..++..||+|++|.+.+|..+.....+...+++|++|++.+|. ..++ ....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~-~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE-QGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH-HHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH-HHHH
Confidence 468888888888887666777788888999999888873111001111135788888885531 1110 0011
Q ss_pred EEEEeccCcceEEEeecCCCcee----eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccc
Q 017981 233 KVIIRAPNLEQLYIRDHGPGLYV----VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMF 308 (363)
Q Consensus 233 ~~~~~~p~L~~L~l~~~~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~ 308 (363)
.+...+|+|++|.++++...... ...+++|+.+.+.+.................+..++..+++|+.|.+++ .+
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l- 443 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL- 443 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC-
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc-
Confidence 11223677888866655443221 1346777777776322000000000001122444556666666666654 11
Q ss_pred cccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeee
Q 017981 309 ALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEV 361 (363)
Q Consensus 309 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 361 (363)
+++.+.... ..+++|+.|+++.+. .++.++..+..+||+|+.|+|+.+
T Consensus 444 ~~~~~~~l~----~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 444 TDKVFEYIG----TYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp CHHHHHHHH----HHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESC
T ss_pred cHHHHHHHH----HhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCC
Confidence 111111000 013345555554443 244444444455555555555444
No 11
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.29 E-value=1.8e-14 Score=129.42 Aligned_cols=233 Identities=14% Similarity=0.180 Sum_probs=162.0
Q ss_pred HHHHHHHhC-CceEEEEEcCCCccccCCcccccC--CcccEEEecccccccC-CCcccCcccceeeeeeEEEccchHHHH
Q 017981 108 LWVSFATMR-NVREIEISLNDDECIELPHCIYTC--KTLEVLKLDMNFFIKT-PPTIFFPSAKILHVILNTIDNNFSDWL 183 (363)
Q Consensus 108 ~wi~~~~~~-~l~~L~l~~~~~~~~~l~~~~~~~--~~L~~L~L~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l 183 (363)
+|-.....+ .++.+++...... +..+... ++++.|++.++.+... +....+++|++|+|.++.+.+.++..+
T Consensus 38 ~W~~~~~~~~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 113 (336)
T 2ast_B 38 RWYRLASDESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 113 (336)
T ss_dssp HHHHHHTCSTTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred HHHHHhcCchhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence 465444322 4777777543321 3334445 8999999999988754 445689999999999999877778889
Q ss_pred hccCCccceEEEeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeec-CCCce----eee
Q 017981 184 FSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDH-GPGLY----VVH 257 (363)
Q Consensus 184 l~~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~-~~~~~----~~~ 257 (363)
+..||+|++|.+.+|...+. ..-.+ ..++|++|++.+|..... .........+|+|++|+++++ ..... .+.
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred HhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 99999999999999874321 11111 258999999999942211 011222346799999999998 65532 256
Q ss_pred cCC-CceEEEEeeeeceeccCCCchhhH-HHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEec
Q 017981 258 ELH-SLTKAVVDYGIECILDYDSPEDVA-QAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGV 335 (363)
Q Consensus 258 ~~~-~L~~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~ 335 (363)
.++ +|+.+.+..+.. ... ..+...+..+++|+.|.++++...+.+.+ . .+..+++|++|++.+|
T Consensus 192 ~l~~~L~~L~l~~~~~---------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~----~-~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 192 HVSETITQLNLSGYRK---------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF----Q-EFFQLNYLQHLSLSRC 257 (336)
T ss_dssp HSCTTCCEEECCSCGG---------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG----G-GGGGCTTCCEEECTTC
T ss_pred hcccCCCEEEeCCCcc---------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH----H-HHhCCCCCCEeeCCCC
Confidence 789 999999875531 111 23667888999999999999863222222 2 3446688999999999
Q ss_pred cCCChHHHHHHHHhCCCCcceEEeee
Q 017981 336 GACGWLSLAHIFSRMPKLESIVFEEV 361 (363)
Q Consensus 336 ~~~~~~~l~~ll~~~p~L~~L~l~~~ 361 (363)
......++. .+.++|+|+.|++.++
T Consensus 258 ~~~~~~~~~-~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 258 YDIIPETLL-ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred CCCCHHHHH-HHhcCCCCCEEeccCc
Confidence 765666553 3477999999998753
No 12
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.27 E-value=7.5e-13 Score=117.47 Aligned_cols=141 Identities=15% Similarity=0.065 Sum_probs=94.2
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
+++++|++..+... .++ .+..+++|++|+|++|.+...+....+++|++|+|.++.+.+-. -+..+++|++|.+
T Consensus 41 ~~L~~L~l~~~~i~--~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVT--TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG---GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCcc--Cch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch---hhcCCCCCCEEEC
Confidence 58888888766532 344 46678999999999988876555778889999999998876542 3677899999999
Q ss_pred eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCcee-eecCCCceEEEEee
Q 017981 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV-VHELHSLTKAVVDY 269 (363)
Q Consensus 196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~L~~~~l~~ 269 (363)
.+|...+. .. -...++|+.|++.+|....... ...+++|++|+++++...... +..+++|+.+.+..
T Consensus 115 ~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 115 TSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182 (308)
T ss_dssp TTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred CCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCC
Confidence 98876555 22 1123788888888876543211 234577777777776543221 44455555555543
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.27 E-value=3e-12 Score=120.27 Aligned_cols=75 Identities=20% Similarity=0.158 Sum_probs=46.5
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
++++.|.+..+.. ..++. +..+++|++|++++|.+...+....+++|++|++.++.+.+-. . +..+++|++|.+
T Consensus 90 ~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l 163 (466)
T 1o6v_A 90 TKLVDILMNNNQI--ADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS--A-LSGLTSLQQLSF 163 (466)
T ss_dssp TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG--G-GTTCTTCSEEEE
T ss_pred ccCCEEECCCCcc--ccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCCh--h-hccCCcccEeec
Confidence 4677777765543 22333 5667788888887777765555667777888888877765531 1 344555555554
Q ss_pred e
Q 017981 196 K 196 (363)
Q Consensus 196 ~ 196 (363)
.
T Consensus 164 ~ 164 (466)
T 1o6v_A 164 G 164 (466)
T ss_dssp E
T ss_pred C
Confidence 3
No 14
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=8.6e-14 Score=127.59 Aligned_cols=235 Identities=17% Similarity=0.094 Sum_probs=131.8
Q ss_pred CCceEEEEEcCCCc---cccCCcccccCCcccEEEecccccccC----C-C-------cccCcccceeeeeeEEEccch-
Q 017981 116 RNVREIEISLNDDE---CIELPHCIYTCKTLEVLKLDMNFFIKT----P-P-------TIFFPSAKILHVILNTIDNNF- 179 (363)
Q Consensus 116 ~~l~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~~~~~----~-~-------~~~~~~L~~L~L~~~~~~~~~- 179 (363)
++++.|+++.+... ...++..+..+++|++|+|++|.+... | + ...+++|++|+|+++.+.+.+
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 46676666544321 112333455677777777777643311 1 1 135677777777777776652
Q ss_pred --HHHHhccCCccceEEEeeeEeCCCceeEEEe-----c---------CCcceEEEEecCCccccCCce---EEEEeccC
Q 017981 180 --SDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-----S---------LTLKRLRLELEAPEEDYITKY---KVIIRAPN 240 (363)
Q Consensus 180 --l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~-----~---------~~L~~L~l~~~~~~~~~~~~~---~~~~~~p~ 240 (363)
+...+..|++|++|.|.+|.+... ....+. . ++|+.|.+.+|..... ... .....+++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQ-AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG--SMKEWAKTFQSHRL 188 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHH-HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG--GHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHH-HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH--HHHHHHHHHHhCCC
Confidence 344456777777777777764211 000111 1 6777777777765321 011 11124567
Q ss_pred cceEEEeecCCCce--------eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcccccc-
Q 017981 241 LEQLYIRDHGPGLY--------VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALD- 311 (363)
Q Consensus 241 L~~L~l~~~~~~~~--------~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~- 311 (363)
|++|.++++..... .+..+++|+.+.+..+.- .......+...+..+++|+.|.++++.+.+..
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l-------~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-------THLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC-------HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC-------CcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 88888887765411 345677788777754432 11112336667788888888888887662110
Q ss_pred -ccccccCCCCCCCCCcceEEEEeccCCChH---HHHHHH-HhCCCCcceEEeeecC
Q 017981 312 -RLDYANDHSFPTFPFLNRLEVEGVGACGWL---SLAHIF-SRMPKLESIVFEEVRM 363 (363)
Q Consensus 312 -~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~l~~ll-~~~p~L~~L~l~~~~~ 363 (363)
.+...+. ...+++|+.|+++++.- +.. .+...+ .++|+|+.|+++.|++
T Consensus 262 ~~l~~~l~--~~~~~~L~~L~L~~n~i-~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 262 AAVVDAFS--KLENIGLQTLRLQYNEI-ELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHH--TCSSCCCCEEECCSSCC-BHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHHHh--hccCCCeEEEECcCCcC-CHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 0111111 02366788888888754 332 244444 5688888888887754
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.24 E-value=3.9e-12 Score=119.50 Aligned_cols=220 Identities=14% Similarity=0.164 Sum_probs=125.5
Q ss_pred hCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981 115 MRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (363)
Q Consensus 115 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (363)
.++++.|+++.+.. ..+++ +..+++|++|++++|.+...+....+++|++|+|.++.+.+-. . +..+++|++|.
T Consensus 67 l~~L~~L~Ls~n~l--~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQL--TDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEE
T ss_pred hcCCCEEECCCCcc--CCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEE
Confidence 36899999987654 23444 7789999999999998886655778999999999999776542 2 78899999999
Q ss_pred EeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeece
Q 017981 195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIEC 273 (363)
Q Consensus 195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~ 273 (363)
+.+|...+. ..+ ...++|+.|.+.++.... .. ...+++|++|+++++..... .+..+++|+.+.+..+...
T Consensus 141 l~~n~l~~~-~~~-~~l~~L~~L~l~~~~~~~-----~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 141 LSSNTISDI-SAL-SGLTSLQQLSFGNQVTDL-----KP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 212 (466)
T ss_dssp EEEEEECCC-GGG-TTCTTCSEEEEEESCCCC-----GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred CCCCccCCC-hhh-ccCCcccEeecCCcccCc-----hh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccc
Confidence 999986654 220 113566666665322110 00 12334555555555433221 1334444444444332210
Q ss_pred eccC-----------CCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHH
Q 017981 274 ILDY-----------DSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLS 342 (363)
Q Consensus 274 ~~~~-----------~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 342 (363)
.... ...+... -...+..+++|+.|.++++.+ ..+. .+..+++|+.|+++.+.-.....
T Consensus 213 ~~~~~~~l~~L~~L~l~~n~l~--~~~~l~~l~~L~~L~l~~n~l---~~~~-----~~~~l~~L~~L~l~~n~l~~~~~ 282 (466)
T 1o6v_A 213 DITPLGILTNLDELSLNGNQLK--DIGTLASLTNLTDLDLANNQI---SNLA-----PLSGLTKLTELKLGANQISNISP 282 (466)
T ss_dssp CCGGGGGCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCC---CCCG-----GGTTCTTCSEEECCSSCCCCCGG
T ss_pred ccccccccCCCCEEECCCCCcc--cchhhhcCCCCCEEECCCCcc---ccch-----hhhcCCCCCEEECCCCccCcccc
Confidence 0000 0000000 001244556666666666544 2211 13355667777777764422221
Q ss_pred HHHHHHhCCCCcceEEeeec
Q 017981 343 LAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 343 l~~ll~~~p~L~~L~l~~~~ 362 (363)
+..+++|+.|++..++
T Consensus 283 ----~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 283 ----LAGLTALTNLELNENQ 298 (466)
T ss_dssp ----GTTCTTCSEEECCSSC
T ss_pred ----ccCCCccCeEEcCCCc
Confidence 5677888888877665
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.23 E-value=3.4e-13 Score=119.96 Aligned_cols=220 Identities=12% Similarity=0.082 Sum_probs=103.6
Q ss_pred CCceEEEEEc-CCCccccCCcccccCCcccEEEeccccccc-CC-CcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981 116 RNVREIEISL-NDDECIELPHCIYTCKTLEVLKLDMNFFIK-TP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (363)
Q Consensus 116 ~~l~~L~l~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (363)
+.++.|+++. ... ...+|..+..+++|++|+|++|.+.. .+ .+..+++|++|+|.++.+.+. +...+..+++|++
T Consensus 76 ~~L~~L~L~~~n~l-~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 76 PYLNFLYIGGINNL-VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG 153 (313)
T ss_dssp TTCSEEEEEEETTE-ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred CCCCeeeCCCCCcc-cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCe
Confidence 4666666653 322 22455555666666666666666542 22 244566666666666666533 1222455666666
Q ss_pred EEEeeeEeCCC-ceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCC---ceeeecCCCceEEEEe
Q 017981 193 LSIKGYIYGTD-SVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG---LYVVHELHSLTKAVVD 268 (363)
Q Consensus 193 L~L~~c~~~~~-~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~---~~~~~~~~~L~~~~l~ 268 (363)
|.+.+|...+. ...+.--.++|+.|++.+|......... +....|++|+++++... ...+..+++|+.+.+.
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~----~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT----FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG----GGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH----HhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence 66666553211 0000001126666666666432110000 01112666666665332 1224556666666655
Q ss_pred eeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHH
Q 017981 269 YGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFS 348 (363)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~ 348 (363)
.+.... ....+..+++|+.|+++.+.+ .... .. .+..+++|+.|+++++.-.+. ++.. .
T Consensus 230 ~N~l~~------------~~~~~~~l~~L~~L~Ls~N~l---~~~~--p~-~l~~l~~L~~L~Ls~N~l~~~--ip~~-~ 288 (313)
T 1ogq_A 230 KNSLAF------------DLGKVGLSKNLNGLDLRNNRI---YGTL--PQ-GLTQLKFLHSLNVSFNNLCGE--IPQG-G 288 (313)
T ss_dssp SSEECC------------BGGGCCCCTTCCEEECCSSCC---EECC--CG-GGGGCTTCCEEECCSSEEEEE--CCCS-T
T ss_pred CCceee------------ecCcccccCCCCEEECcCCcc---cCcC--Ch-HHhcCcCCCEEECcCCccccc--CCCC-c
Confidence 433210 001134556677777766654 2110 01 223455666666666532100 1111 4
Q ss_pred hCCCCcceEEeeec
Q 017981 349 RMPKLESIVFEEVR 362 (363)
Q Consensus 349 ~~p~L~~L~l~~~~ 362 (363)
..++|+.|++..|+
T Consensus 289 ~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 289 NLQRFDVSAYANNK 302 (313)
T ss_dssp TGGGSCGGGTCSSS
T ss_pred cccccChHHhcCCC
Confidence 45666666665543
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.21 E-value=9.7e-13 Score=124.01 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=12.1
Q ss_pred HHhhccCcceEEEEeCCcc
Q 017981 289 DMLRDIKNIKSLSLSSGTM 307 (363)
Q Consensus 289 ~~l~~l~~l~~L~l~~~~~ 307 (363)
..+..+++|+.|+++++.+
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp HHHTTCTTCCEEECCSSCC
T ss_pred HHhcCccccCeeECCCCcC
Confidence 3456667777777766654
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.21 E-value=1e-12 Score=123.91 Aligned_cols=222 Identities=17% Similarity=0.119 Sum_probs=122.6
Q ss_pred CceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (363)
+++.|+++.+.. ....+..+..+++|++|+|+++.+... ..+..+++|++|+|.++.+++-. ...+..+++|+.|.
T Consensus 105 ~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 105 NLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLR 182 (477)
T ss_dssp TCCEEECTTSCC-CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEE
T ss_pred CCCEEECCCCcc-ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEe
Confidence 555555544432 112233444566666666666655432 23446667777777776654432 23456677777777
Q ss_pred EeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeeee
Q 017981 195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGI 271 (363)
Q Consensus 195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~ 271 (363)
+.+|...+.........++|+.|++.+|....... ......++|++|+++++...... +..+++|+.+++..+.
T Consensus 183 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT---PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC---TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred CCCCcCcEeChhhcccCcccceeeCCCCccccccC---cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence 77765322200011123677777777764322100 00012347888888877655433 5677888888776543
Q ss_pred ceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCC
Q 017981 272 ECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMP 351 (363)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p 351 (363)
-... ....+..+++|+.|.++++.+ ..+.. . .+..+++|+.|+++.+.-... ....+..++
T Consensus 260 l~~~-----------~~~~~~~l~~L~~L~L~~n~l---~~~~~--~-~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~ 320 (477)
T 2id5_A 260 ISTI-----------EGSMLHELLRLQEIQLVGGQL---AVVEP--Y-AFRGLNYLRVLNVSGNQLTTL--EESVFHSVG 320 (477)
T ss_dssp CCEE-----------CTTSCTTCTTCCEEECCSSCC---SEECT--T-TBTTCTTCCEEECCSSCCSCC--CGGGBSCGG
T ss_pred CCcc-----------ChhhccccccCCEEECCCCcc---ceECH--H-HhcCcccCCEEECCCCcCcee--CHhHcCCCc
Confidence 2110 123356778888888888766 33221 1 344667788888887643221 112456678
Q ss_pred CCcceEEeeec
Q 017981 352 KLESIVFEEVR 362 (363)
Q Consensus 352 ~L~~L~l~~~~ 362 (363)
+|+.|+++.|+
T Consensus 321 ~L~~L~l~~N~ 331 (477)
T 2id5_A 321 NLETLILDSNP 331 (477)
T ss_dssp GCCEEECCSSC
T ss_pred ccCEEEccCCC
Confidence 88888887765
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.20 E-value=5.1e-12 Score=115.91 Aligned_cols=104 Identities=12% Similarity=0.128 Sum_probs=61.3
Q ss_pred cCcceEEEeecCCCce-eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcccccccccccc
Q 017981 239 PNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYAN 317 (363)
Q Consensus 239 p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~ 317 (363)
++|++|.++++..... .+..+++|+.+++..+.-.. .....+..+++|+.|.++++.+ ..+..
T Consensus 226 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~l---~~~~~-- 289 (390)
T 3o6n_A 226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK-----------IMYHPFVKMQRLERLYISNNRL---VALNL-- 289 (390)
T ss_dssp SSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE-----------EESGGGTTCSSCCEEECCSSCC---CEEEC--
T ss_pred ccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCC-----------cChhHccccccCCEEECCCCcC---cccCc--
Confidence 4556666555544322 24456666666665443211 0123456677888888877766 33322
Q ss_pred CCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981 318 DHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 318 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
....+++|+.|+++.+.-.. +..-+..+|+|+.|+++.+++
T Consensus 290 --~~~~l~~L~~L~L~~n~l~~---~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 290 --YGQPIPTLKVLDLSHNHLLH---VERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp --SSSCCTTCCEEECCSSCCCC---CGGGHHHHTTCSEEECCSSCC
T ss_pred --ccCCCCCCCEEECCCCccee---cCccccccCcCCEEECCCCcc
Confidence 23356789999998875422 233346679999999988764
No 20
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.19 E-value=5.4e-12 Score=113.00 Aligned_cols=223 Identities=14% Similarity=0.044 Sum_probs=108.6
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
.+++.|++..+... ...|..+..+++|++|+|++|.+...+. ..+++|++|++.++.+..-. ...+.++++|++|.+
T Consensus 76 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 76 KNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVEL 152 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCS-SCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccCh-hhcccccEEECCCCcccccC-HhHhcCCccccEEEC
Confidence 35666666544321 1224445556666666666665553222 12245555555555443321 222344555555555
Q ss_pred eee--------------------------EeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeec
Q 017981 196 KGY--------------------------IYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDH 249 (363)
Q Consensus 196 ~~c--------------------------~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 249 (363)
.+| ........+ .++|+.|++.+|....... .....+++|++|+++++
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDA---ASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECT---GGGTTCTTCCEEECCSS
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc---cccCCEEECCCCcCCccCH---HHhcCCCCCCEEECCCC
Confidence 544 322220000 1455555555554321100 00123456666666665
Q ss_pred CCCce---eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcccccccccc-cc-C-CCCCC
Q 017981 250 GPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDY-AN-D-HSFPT 323 (363)
Q Consensus 250 ~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~-~~-~-~~~~~ 323 (363)
..... .+..+++|+.+.+..+.-. .+...+..+++|+.|.++++.+ ..+.. .+ . .....
T Consensus 227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~------------~lp~~l~~l~~L~~L~l~~N~i---~~~~~~~f~~~~~~~~ 291 (330)
T 1xku_A 227 SISAVDNGSLANTPHLRELHLNNNKLV------------KVPGGLADHKYIQVVYLHNNNI---SAIGSNDFCPPGYNTK 291 (330)
T ss_dssp CCCEECTTTGGGSTTCCEEECCSSCCS------------SCCTTTTTCSSCCEEECCSSCC---CCCCTTSSSCSSCCTT
T ss_pred cCceeChhhccCCCCCCEEECCCCcCc------------cCChhhccCCCcCEEECCCCcC---CccChhhcCCcccccc
Confidence 54332 2445566666665544321 0222356677888888887766 43332 11 1 01123
Q ss_pred CCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981 324 FPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 324 ~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
...|+.|++.+++...+.....-+.++++|+.++++.|+
T Consensus 292 ~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 456778888777653333334567788999999988775
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.19 E-value=4.9e-12 Score=116.02 Aligned_cols=122 Identities=14% Similarity=0.156 Sum_probs=75.0
Q ss_pred CcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeeeeceeccCCCchhhHHHHHH
Q 017981 213 TLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVD 289 (363)
Q Consensus 213 ~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~ 289 (363)
+|+.|++.+|..... .....+|+|++|+++++..... .+..+++|+.+.+..+.-.. +..
T Consensus 227 ~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~ 289 (390)
T 3o6n_A 227 ELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA------------LNL 289 (390)
T ss_dssp SCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE------------EEC
T ss_pred cccEEECCCCCCccc-----HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc------------cCc
Confidence 455555555543321 1123468888888888866544 34567888888776543211 111
Q ss_pred HhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981 290 MLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 290 ~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
.+..+++|+.|.++++.+ ..+.. .+..+++|+.|++.++.-.+.. +..+++|+.|+++.|++
T Consensus 290 ~~~~l~~L~~L~L~~n~l---~~~~~----~~~~l~~L~~L~L~~N~i~~~~-----~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 290 YGQPIPTLKVLDLSHNHL---LHVER----NQPQFDRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp SSSCCTTCCEEECCSSCC---CCCGG----GHHHHTTCSEEECCSSCCCCCC-----CCTTCCCSEEECCSSCE
T ss_pred ccCCCCCCCEEECCCCcc---eecCc----cccccCcCCEEECCCCccceeC-----chhhccCCEEEcCCCCc
Confidence 234577888888888766 43322 2335677888888887643321 56788888888887753
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.19 E-value=3.8e-13 Score=125.95 Aligned_cols=81 Identities=19% Similarity=0.107 Sum_probs=36.8
Q ss_pred CceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (363)
+++.|++..+... ...+..+.++++|++|+|++|.+... ..+..+++|++|+|.++.++.-. ...+..+++|++|.
T Consensus 76 ~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 76 NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRELW 153 (452)
T ss_dssp TCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCEEE
T ss_pred CccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCCEEE
Confidence 4555555443321 11223334455555555555544432 12334555555555555443221 12234455555555
Q ss_pred EeeeE
Q 017981 195 IKGYI 199 (363)
Q Consensus 195 L~~c~ 199 (363)
|.+|.
T Consensus 154 L~~N~ 158 (452)
T 3zyi_A 154 LRNNP 158 (452)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 55544
No 23
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.18 E-value=7.1e-13 Score=118.12 Aligned_cols=210 Identities=14% Similarity=0.075 Sum_probs=115.8
Q ss_pred CCceEEEEEcCCCccccCC-cccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981 116 RNVREIEISLNDDECIELP-HCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (363)
+++++|+++.+... .++ ..+..+++|++|+|++|.+...+.+..+++|++|+|.++.+++- ..+++|++|.
T Consensus 34 ~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l------~~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL------LVGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCC--CCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEE------EECTTCCEEE
T ss_pred CCCCEEECcCCccC--cCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccc------cCCCCcCEEE
Confidence 36777777665431 233 34556788888888887776444466777888888887776542 1346666666
Q ss_pred EeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEec-------------------------cCcceEEEeec
Q 017981 195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRA-------------------------PNLEQLYIRDH 249 (363)
Q Consensus 195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-------------------------p~L~~L~l~~~ 249 (363)
+.+|...+. .....++|+.|.+.+|....... .....+ ++|++|+++++
T Consensus 106 l~~n~l~~~---~~~~~~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 106 AANNNISRV---SCSRGQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CCSSCCSEE---EECCCSSCEEEECCSSCCCSGGG---BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CCCCccCCc---CccccCCCCEEECCCCCCCCccc---hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 666553221 11113556666665554332100 000123 44555555444
Q ss_pred CCCcee-eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcc
Q 017981 250 GPGLYV-VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLN 328 (363)
Q Consensus 250 ~~~~~~-~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~ 328 (363)
...... ...+++|+.+++..+.-.. +...+..+++|+.|+++++.+ ..+.. .+..+++|+
T Consensus 180 ~l~~~~~~~~l~~L~~L~Ls~N~l~~------------l~~~~~~l~~L~~L~L~~N~l---~~l~~----~~~~l~~L~ 240 (317)
T 3o53_A 180 FIYDVKGQVVFAKLKTLDLSSNKLAF------------MGPEFQSAAGVTWISLRNNKL---VLIEK----ALRFSQNLE 240 (317)
T ss_dssp CCCEEECCCCCTTCCEEECCSSCCCE------------ECGGGGGGTTCSEEECTTSCC---CEECT----TCCCCTTCC
T ss_pred cCcccccccccccCCEEECCCCcCCc------------chhhhcccCcccEEECcCCcc---cchhh----HhhcCCCCC
Confidence 333221 1124445555444332110 111256677888888887766 43322 344567788
Q ss_pred eEEEEeccCCChHHHHHHHHhCCCCcceEEe
Q 017981 329 RLEVEGVGACGWLSLAHIFSRMPKLESIVFE 359 (363)
Q Consensus 329 ~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~ 359 (363)
.|+++++.. ....+...+..+|+|+.|.+.
T Consensus 241 ~L~l~~N~~-~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 241 HFDLRGNGF-HCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp EEECTTCCC-BHHHHHHHHHTCHHHHHHHHH
T ss_pred EEEccCCCc-cCcCHHHHHhccccceEEECC
Confidence 888887754 334677777888888777654
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.18 E-value=9.7e-13 Score=123.17 Aligned_cols=67 Identities=22% Similarity=0.322 Sum_probs=42.4
Q ss_pred HHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981 289 DMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 289 ~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
..+..+++|+.|+++++.+ ..+.. . .+..+++|+.|+++++.-.+. ....+..+++|+.|+++.|++
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l---~~~~~--~-~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHI---RALGD--Q-SFLGLPNLKELALDTNQLKSV--PDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp GGGTTCTTCCEEECCSSCC---CEECT--T-TTTTCTTCCEEECCSSCCSCC--CTTTTTTCTTCCEEECCSSCB
T ss_pred hHhcCcccCCEEECCCCcc---cccCh--h-hccccccccEEECCCCccccC--CHhHhccCCcccEEEccCCCc
Confidence 3456677788888877765 33211 1 344677888888887653221 122457788899888887754
No 25
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.18 E-value=9.5e-12 Score=116.41 Aligned_cols=199 Identities=14% Similarity=0.065 Sum_probs=97.1
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
++++.|+++.+.... +| +..+++|++|++++|.+... ....+++|++|+|.++.+++-. +..+++|++|.+
T Consensus 64 ~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCeec----CCCCCcCCEEEC
Confidence 355555554443211 22 34455555555555555433 2445555555555555443321 445555555555
Q ss_pred eeeEeCCCceeEEEe-cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCceEEEEeeeecee
Q 017981 196 KGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECI 274 (363)
Q Consensus 196 ~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~ 274 (363)
.+|...+. . +. .++|+.|++.+|..... . -...+++|++|+++++......+..+++|+.+.+..+.-..
T Consensus 135 ~~N~l~~l-~---l~~l~~L~~L~l~~n~~~~~----~-~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 135 ARNTLTEI-D---VSHNTQLTELDCHLNKKITK----L-DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp TTSCCSCC-C---CTTCTTCCEEECTTCSCCCC----C-CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSC
T ss_pred CCCcccee-c---cccCCcCCEEECCCCCcccc----c-ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCe
Confidence 55544332 1 21 25555555555532211 0 01234566666666665555455556666666554332210
Q ss_pred ccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCc
Q 017981 275 LDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLE 354 (363)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~ 354 (363)
. -+..+++|+.|+++.+.+ ..+ ++..+++|+.|+++.+.-... . +..+++|+
T Consensus 206 ------------~--~l~~l~~L~~L~Ls~N~l---~~i------p~~~l~~L~~L~l~~N~l~~~---~--~~~l~~L~ 257 (457)
T 3bz5_A 206 ------------L--DLNQNIQLTFLDCSSNKL---TEI------DVTPLTQLTYFDCSVNPLTEL---D--VSTLSKLT 257 (457)
T ss_dssp ------------C--CCTTCTTCSEEECCSSCC---SCC------CCTTCTTCSEEECCSSCCSCC---C--CTTCTTCC
T ss_pred ------------e--ccccCCCCCEEECcCCcc---ccc------CccccCCCCEEEeeCCcCCCc---C--HHHCCCCC
Confidence 0 145566777777766655 221 233556677777766543221 1 34566666
Q ss_pred ceEEee
Q 017981 355 SIVFEE 360 (363)
Q Consensus 355 ~L~l~~ 360 (363)
.|++..
T Consensus 258 ~L~l~~ 263 (457)
T 3bz5_A 258 TLHCIQ 263 (457)
T ss_dssp EEECTT
T ss_pred EEeccC
Confidence 555443
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.16 E-value=5.2e-13 Score=129.67 Aligned_cols=81 Identities=22% Similarity=0.219 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (363)
++++|++..+.. ..+|..+..+++|++|++++|.+... ..+..+++|++|++.++.+........+..+++|++|.
T Consensus 279 ~L~~L~l~~n~l--~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 279 GLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TCSEEECTTSCC--SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred CCCEEeccCCcc--CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 444444443332 13444444455555555555544432 12334555555555555433221112234455555555
Q ss_pred EeeeE
Q 017981 195 IKGYI 199 (363)
Q Consensus 195 L~~c~ 199 (363)
+.+|.
T Consensus 357 l~~n~ 361 (606)
T 3t6q_A 357 LSHDD 361 (606)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 55544
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.16 E-value=4.2e-13 Score=125.18 Aligned_cols=206 Identities=17% Similarity=0.194 Sum_probs=103.6
Q ss_pred CCceEEEEEcCCCccccCC-cccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981 116 RNVREIEISLNDDECIELP-HCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (363)
++++.|+++.+... .++ ..+..+++|++|+|++|.+...+ .+..+++|++|+|.++.+..-. ...+..+++|++
T Consensus 88 ~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~ 164 (440)
T 3zyj_A 88 RHLEILQLSRNHIR--TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSLRR 164 (440)
T ss_dssp SSCCEEECCSSCCC--EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC-TTTTTTCTTCCE
T ss_pred CCCCEEECCCCcCC--ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccC-HHHhhhCcccCE
Confidence 35666666554431 222 23444666666666666655432 2445666666666666554321 123456666776
Q ss_pred EEEeeeEeCCCceeEEE----ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEE
Q 017981 193 LSIKGYIYGTDSVTLNI----PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKA 265 (363)
Q Consensus 193 L~L~~c~~~~~~~~l~i----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~ 265 (363)
|.+.+|.. . ..+.. ..++|+.|++.+|..... . -....++|++|+++++..... .+.++++|+.+
T Consensus 165 L~l~~~~~--l-~~i~~~~~~~l~~L~~L~L~~n~l~~~----~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 236 (440)
T 3zyj_A 165 LDLGELKR--L-SYISEGAFEGLSNLRYLNLAMCNLREI----P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236 (440)
T ss_dssp EECCCCTT--C-CEECTTTTTTCSSCCEEECTTSCCSSC----C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred eCCCCCCC--c-ceeCcchhhcccccCeecCCCCcCccc----c-ccCCCcccCEEECCCCccCccChhhhccCccCCEE
Confidence 66666431 1 11110 125666777766654322 1 123456677777776654433 24455666666
Q ss_pred EEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC---CChHH
Q 017981 266 VVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA---CGWLS 342 (363)
Q Consensus 266 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~ 342 (363)
.+..+.-... ....+..+++|+.|+++++.+ ..+.. . .+..+++|+.|++.+++- +...+
T Consensus 237 ~L~~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~l---~~~~~--~-~~~~l~~L~~L~L~~Np~~CdC~l~~ 299 (440)
T 3zyj_A 237 WMIQSQIQVI-----------ERNAFDNLQSLVEINLAHNNL---TLLPH--D-LFTPLHHLERIHLHHNPWNCNCDILW 299 (440)
T ss_dssp ECTTCCCCEE-----------CTTSSTTCTTCCEEECTTSCC---CCCCT--T-TTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred ECCCCceeEE-----------ChhhhcCCCCCCEEECCCCCC---CccCh--h-HhccccCCCEEEcCCCCccCCCCchH
Confidence 5543321110 122345566777777776655 32221 1 233456677777766542 23344
Q ss_pred HHHHHHh
Q 017981 343 LAHIFSR 349 (363)
Q Consensus 343 l~~ll~~ 349 (363)
+...++.
T Consensus 300 l~~~~~~ 306 (440)
T 3zyj_A 300 LSWWIKD 306 (440)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 4444443
No 28
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.15 E-value=1.2e-12 Score=123.49 Aligned_cols=219 Identities=14% Similarity=0.099 Sum_probs=108.8
Q ss_pred CceEEEEEcCCCccccCC-cccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 117 NVREIEISLNDDECIELP-HCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
+++.|+++.+... .++ ..+..+++|++|+|++|.+...+++..+++|++|+|+++.+++- ...|+|++|.+
T Consensus 35 ~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l------~~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL------LVGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCC--CCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEE------EECTTCCEEEC
T ss_pred CccEEEeeCCcCC--CCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCC------CCCCCcCEEEC
Confidence 6777777665431 233 34556777777777777766444466777777777777766542 12366666666
Q ss_pred eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceee----ecCCCceEEEEeeee
Q 017981 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVV----HELHSLTKAVVDYGI 271 (363)
Q Consensus 196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~----~~~~~L~~~~l~~~~ 271 (363)
.+|.+.+. . ....++|+.|++.+|....... .....+++|++|+++++....... ..+++|+.+++..+.
T Consensus 107 ~~N~l~~~-~--~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 107 ANNNISRV-S--CSRGQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CSSCCCCE-E--ECCCSSCEEEECCSSCCCSGGG---BCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred cCCcCCCC-C--ccccCCCCEEECCCCCCCCCCc---hhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 66654332 1 1122556666666554432100 000123455555555444332211 133444444443222
Q ss_pred ceecc-----------CCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCCh
Q 017981 272 ECILD-----------YDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGW 340 (363)
Q Consensus 272 ~~~~~-----------~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 340 (363)
-.... .+..+.+.. +..-+..+++|+.|+++++.+ ..+.. .+..+++|+.|++.++.. ..
T Consensus 181 l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l---~~lp~----~l~~l~~L~~L~l~~N~l-~c 251 (487)
T 3oja_A 181 IYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL---VLIEK----ALRFSQNLEHFDLRGNGF-HC 251 (487)
T ss_dssp CCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCC---CEECT----TCCCCTTCCEEECTTCCB-CH
T ss_pred cccccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcC---cccch----hhccCCCCCEEEcCCCCC-cC
Confidence 10000 000000000 111145666777777777655 32221 334556677777776654 33
Q ss_pred HHHHHHHHhCCCCcceEE
Q 017981 341 LSLAHIFSRMPKLESIVF 358 (363)
Q Consensus 341 ~~l~~ll~~~p~L~~L~l 358 (363)
..++..+..+|.|+.+.+
T Consensus 252 ~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 252 GTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHhCCCCcEEec
Confidence 456666667776666554
No 29
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.15 E-value=5.4e-12 Score=112.41 Aligned_cols=189 Identities=10% Similarity=0.095 Sum_probs=125.2
Q ss_pred cCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcce
Q 017981 139 TCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR 216 (363)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~ 216 (363)
.+++|++|+|++|.+...+ .+..+++|++|+|.++.+++.. . +..+++|++|.+.+|.+.+. . ..++|+.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~Ls~n~l~~l----~-~~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNYVQEL----L-VGPSIET 103 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTCCEEECCSSEEEEE----E-ECTTCCE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCCCEEECcCCccccc----c-CCCCcCE
Confidence 4789999999999888653 3568999999999999876542 1 77899999999999886443 1 3489999
Q ss_pred EEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhc
Q 017981 217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRD 293 (363)
Q Consensus 217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (363)
|.+.+|..... .....++|++|.++++..... .+..+++|+.+.+..+.-.... ...+...
T Consensus 104 L~l~~n~l~~~------~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------~~~~~~~ 167 (317)
T 3o53_A 104 LHAANNNISRV------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN----------FAELAAS 167 (317)
T ss_dssp EECCSSCCSEE------EECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE----------GGGGGGG
T ss_pred EECCCCccCCc------CccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc----------HHHHhhc
Confidence 99999976432 234478999999999876543 4567788998887654321100 1223346
Q ss_pred cCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981 294 IKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 294 l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
+++|+.|.++++.+ ..+. ....+++|+.|+++.+.-.. +..-+..+++|+.|+++.++
T Consensus 168 l~~L~~L~L~~N~l---~~~~-----~~~~l~~L~~L~Ls~N~l~~---l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 168 SDTLEHLNLQYNFI---YDVK-----GQVVFAKLKTLDLSSNKLAF---MGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp TTTCCEEECTTSCC---CEEE-----CCCCCTTCCEEECCSSCCCE---ECGGGGGGTTCSEEECTTSC
T ss_pred cCcCCEEECCCCcC---cccc-----cccccccCCEEECCCCcCCc---chhhhcccCcccEEECcCCc
Confidence 67888888887766 3321 11234556666666553211 11113445555555555443
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.14 E-value=1.4e-12 Score=115.55 Aligned_cols=220 Identities=15% Similarity=0.085 Sum_probs=121.7
Q ss_pred CCceEEEEEcCCCccccCCcc-cccCCcccEEEecccccccC----CCcccCcccceeeeeeEEEccchHHHHhccCCcc
Q 017981 116 RNVREIEISLNDDECIELPHC-IYTCKTLEVLKLDMNFFIKT----PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPAL 190 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L 190 (363)
.++++|++..+.. ..+|.. +..+++|++|+|++|.+... .....+++|++|+|.++.+..- ..-+..+++|
T Consensus 28 ~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l--~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM--SSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE--EEEEETCTTC
T ss_pred CCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC--hhhcCCCCCC
Confidence 4677777765543 245544 34577777777777765422 2233567777777777755432 1225567777
Q ss_pred ceEEEeeeEeCCCcee--EEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCc----eeeecCCCceE
Q 017981 191 EDLSIKGYIYGTDSVT--LNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL----YVVHELHSLTK 264 (363)
Q Consensus 191 e~L~L~~c~~~~~~~~--l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~----~~~~~~~~L~~ 264 (363)
++|.+.+|...+. .. .....++|+.|++.+|........ ....+++|++|.++++.... ..+..+++|+.
T Consensus 104 ~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 104 EHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp CEEECTTSEEESS-TTTTTTTTCTTCCEEECTTSCCEECSTT---TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CEEECCCCccccc-ccchhhhhccCCCEEECCCCcCCccchh---hcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence 7777777664433 11 111236777777777654321000 11235677777777664432 23456677777
Q ss_pred EEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHH
Q 017981 265 AVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLA 344 (363)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~ 344 (363)
+++..+.-.. .....+..+++|+.|.++++.+ ..+.. . .+..+++|+.|+++++.-.+. ..
T Consensus 180 L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l---~~~~~--~-~~~~l~~L~~L~L~~N~l~~~--~~ 240 (306)
T 2z66_A 180 LDLSQCQLEQ-----------LSPTAFNSLSSLQVLNMSHNNF---FSLDT--F-PYKCLNSLQVLDYSLNHIMTS--KK 240 (306)
T ss_dssp EECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCC---SBCCS--G-GGTTCTTCCEEECTTSCCCBC--SS
T ss_pred EECCCCCcCC-----------cCHHHhcCCCCCCEEECCCCcc---CccCh--h-hccCcccCCEeECCCCCCccc--CH
Confidence 7665443211 0123456677888888877765 32221 0 233566788888877643111 11
Q ss_pred HHHHhCC-CCcceEEeeec
Q 017981 345 HIFSRMP-KLESIVFEEVR 362 (363)
Q Consensus 345 ~ll~~~p-~L~~L~l~~~~ 362 (363)
..+..+| +|+.|+++.|+
T Consensus 241 ~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SSCCCCCTTCCEEECTTCC
T ss_pred HHHHhhhccCCEEEccCCC
Confidence 1234454 78888887765
No 31
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.14 E-value=7.8e-12 Score=117.96 Aligned_cols=189 Identities=10% Similarity=0.105 Sum_probs=128.0
Q ss_pred cCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcce
Q 017981 139 TCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR 216 (363)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~ 216 (363)
.+++|++|+|++|.+...+ .+..+++|++|+|+++.+++.. . +..+++|++|+|.+|.+.+. ...++|+.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNYVQEL-----LVGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSEEEEE-----EECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCcCCCC-----CCCCCcCE
Confidence 4569999999999988653 3568999999999999876542 1 78899999999999986443 13489999
Q ss_pred EEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhc
Q 017981 217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRD 293 (363)
Q Consensus 217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (363)
|++.+|..... .....|+|++|.++++..... .++.+++|+.+++..+.-.... ...+...
T Consensus 104 L~L~~N~l~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------~~~l~~~ 167 (487)
T 3oja_A 104 LHAANNNISRV------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN----------FAELAAS 167 (487)
T ss_dssp EECCSSCCCCE------EECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE----------GGGGGGG
T ss_pred EECcCCcCCCC------CccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC----------hHHHhhh
Confidence 99999976532 223468999999999876643 4577899999888655321100 1223346
Q ss_pred cCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981 294 IKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 294 l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
+++|+.|+++++.+ ..+. ....+++|+.|+++++.-.. +..-+..+|+|+.|+++.|+
T Consensus 168 l~~L~~L~Ls~N~l---~~~~-----~~~~l~~L~~L~Ls~N~l~~---~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 168 SDTLEHLNLQYNFI---YDVK-----GQVVFAKLKTLDLSSNKLAF---MGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp TTTCCEEECTTSCC---CEEE-----CCCCCTTCCEEECCSSCCCE---ECGGGGGGTTCSEEECTTSC
T ss_pred CCcccEEecCCCcc---cccc-----ccccCCCCCEEECCCCCCCC---CCHhHcCCCCccEEEecCCc
Confidence 78888888888766 3321 12235566677666654311 11114455666666665544
No 32
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.14 E-value=7e-13 Score=124.33 Aligned_cols=84 Identities=10% Similarity=0.062 Sum_probs=36.2
Q ss_pred CCceEEEEEcCCCccc---cCCcccccCCcccEEEecccccccC-C-C-cccCc----ccceeeeeeEEEccc---hHHH
Q 017981 116 RNVREIEISLNDDECI---ELPHCIYTCKTLEVLKLDMNFFIKT-P-P-TIFFP----SAKILHVILNTIDNN---FSDW 182 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~~~~~-~-~-~~~~~----~L~~L~L~~~~~~~~---~l~~ 182 (363)
++++.|+++.+..... .++..+..+++|++|+|++|.+.+. + . ...++ +|++|+|.+|.+++. .+..
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 3555555554432211 2333344455555555555544321 0 0 01122 455555555554433 2233
Q ss_pred HhccCCccceEEEeeeE
Q 017981 183 LFSKCPALEDLSIKGYI 199 (363)
Q Consensus 183 ll~~cp~Le~L~L~~c~ 199 (363)
.+..+++|++|.+.+|.
T Consensus 108 ~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HTTSCTTCCEEECCSSB
T ss_pred HHccCCceeEEECCCCc
Confidence 34455555555555544
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.13 E-value=4.8e-12 Score=121.84 Aligned_cols=224 Identities=17% Similarity=0.125 Sum_probs=112.3
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCC---------------------cccCcccceeeeeeEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPP---------------------TIFFPSAKILHVILNT 174 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~---------------------~~~~~~L~~L~L~~~~ 174 (363)
.+++.+++..+.. ..+|..+..+ +|++|++.+|.+...+. ...+++|++|++.++.
T Consensus 282 ~~L~~L~l~~~~l--~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 282 TNVSSFSLVSVTI--ERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358 (570)
T ss_dssp TTCSEEEEESCEE--CSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred CcccEEEecCccc--hhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence 5788888866542 2455555555 66666666665553222 2344455555555444
Q ss_pred Eccc-hHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCc
Q 017981 175 IDNN-FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL 253 (363)
Q Consensus 175 ~~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~ 253 (363)
+... .....+.++++|++|.+.+|...+. ..-....++|+.|++.+|....... ......+++|++|+++++....
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTT--SCTTTTCTTCCEEECTTSCCEE
T ss_pred cCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccc--hhhhhcCCCCCEEeCcCCcccc
Confidence 3322 1112234455555555555543222 1111123555555555543321100 0011234556666655553321
Q ss_pred ---eeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceE
Q 017981 254 ---YVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRL 330 (363)
Q Consensus 254 ---~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L 330 (363)
..+..+++|+.+.+..+.... ..+...+..+++|+.|+++++.+ ..+. .. .+..+++|+.|
T Consensus 436 ~~~~~~~~l~~L~~L~l~~n~l~~----------~~~p~~~~~l~~L~~L~l~~n~l---~~~~--~~-~~~~l~~L~~L 499 (570)
T 2z63_A 436 AFNGIFNGLSSLEVLKMAGNSFQE----------NFLPDIFTELRNLTFLDLSQCQL---EQLS--PT-AFNSLSSLQVL 499 (570)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGG----------GEECSCCTTCTTCCEEECTTSCC---CEEC--TT-TTTTCTTCCEE
T ss_pred cchhhhhcCCcCcEEECcCCcCcc----------ccchhhhhcccCCCEEECCCCcc---ccCC--hh-hhhcccCCCEE
Confidence 123445566665554332100 00223456677788888877765 3221 11 34466788888
Q ss_pred EEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981 331 EVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 331 ~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
++.++.-.+. ....+..+|+|+.|+++.+++
T Consensus 500 ~l~~n~l~~~--~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 500 NMASNQLKSV--PDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECCSSCCSCC--CTTTTTTCTTCCEEECCSSCB
T ss_pred eCCCCcCCCC--CHHHhhcccCCcEEEecCCcc
Confidence 8887743221 123457788899888887753
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.12 E-value=9.2e-12 Score=111.61 Aligned_cols=133 Identities=15% Similarity=0.123 Sum_probs=81.1
Q ss_pred CCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeeeeceeccCCCchhhHHHHH
Q 017981 212 LTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVV 288 (363)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 288 (363)
++|+.|++.+|....... .....+++|++|+++++..... .+..+++|+.+++..+.-.. +.
T Consensus 193 ~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------lp 257 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIEL---EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR------------VP 257 (332)
T ss_dssp SSCSCCBCCSSCCCCCCT---TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB------------CC
T ss_pred CCCCEEECCCCcCCccCH---HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee------------cC
Confidence 567777777765432210 1113457888888887765433 35677888888776553211 22
Q ss_pred HHhhccCcceEEEEeCCcccccccccc-ccCCC--CCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981 289 DMLRDIKNIKSLSLSSGTMFALDRLDY-ANDHS--FPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 289 ~~l~~l~~l~~L~l~~~~~~~~~~l~~-~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
..+..+++|+.|+++++.+ ..+.. .+... ...+.+|+.|++.+++...+......+.++++|+.++++.++
T Consensus 258 ~~l~~l~~L~~L~l~~N~l---~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTNNI---TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTGGGCTTCCEEECCSSCC---CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhhhcCccCCEEECCCCCC---CccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 3367889999999998877 44332 11101 112567899999988653333444567889999999998875
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.12 E-value=1.1e-11 Score=119.95 Aligned_cols=217 Identities=13% Similarity=0.114 Sum_probs=115.6
Q ss_pred CCceEEEEEcCCCccccCCc-ccccCCcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981 116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (363)
.+++.|++..+.. ..+++ .+..+++|++|+|++|.+...+. +..+++|++|+|.++.+.+-. ...+..+++|++
T Consensus 99 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~ 175 (597)
T 3oja_B 99 HTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQN 175 (597)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCE
T ss_pred CCCCEEECCCCcC--CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcE
Confidence 4777777766553 23333 34567788888888777765433 346777888888777665431 223566777777
Q ss_pred EEEeeeEeCCCc-------eeE--------E-EecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-e
Q 017981 193 LSIKGYIYGTDS-------VTL--------N-IPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-V 255 (363)
Q Consensus 193 L~L~~c~~~~~~-------~~l--------~-i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~ 255 (363)
|.+.+|.+.+.. ..+ . ...++|+.|++.+|..... .....++|+.|.++++..... .
T Consensus 176 L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~------~~~~~~~L~~L~L~~n~l~~~~~ 249 (597)
T 3oja_B 176 LQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV------RGPVNVELTILKLQHNNLTDTAW 249 (597)
T ss_dssp EECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEE------ECSCCSCCCEEECCSSCCCCCGG
T ss_pred EECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccc------ccccCCCCCEEECCCCCCCCChh
Confidence 777776543320 000 0 0123444555544433211 001124566666666544322 2
Q ss_pred eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEec
Q 017981 256 VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGV 335 (363)
Q Consensus 256 ~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~ 335 (363)
+..+++|+.+.+..+.... .....+..+++|+.|.++++.+ ..+.. ....+++|+.|+++.+
T Consensus 250 l~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l---~~l~~----~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEK-----------IMYHPFVKMQRLERLYISNNRL---VALNL----YGQPIPTLKVLDLSHN 311 (597)
T ss_dssp GGGCTTCSEEECCSSCCCE-----------EESGGGTTCSSCCEEECTTSCC---CEEEC----SSSCCTTCCEEECCSS
T ss_pred hccCCCCCEEECCCCccCC-----------CCHHHhcCccCCCEEECCCCCC---CCCCc----ccccCCCCcEEECCCC
Confidence 4566677776665443211 0123355667777777777655 33221 2234566777777766
Q ss_pred cCCChHHHHHHHHhCCCCcceEEeeec
Q 017981 336 GACGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 336 ~~~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
.-.. ++.-+..+|+|+.|+++.++
T Consensus 312 ~l~~---i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 312 HLLH---VERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CCCC---CGGGHHHHTTCSEEECCSSC
T ss_pred CCCc---cCcccccCCCCCEEECCCCC
Confidence 4322 22223455666666665554
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.12 E-value=2.3e-12 Score=115.39 Aligned_cols=219 Identities=15% Similarity=0.065 Sum_probs=119.6
Q ss_pred CCceEEEEEcCCCccccCCc-ccccCCcccEEEecccccccC-C-CcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981 116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKT-P-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (363)
+.++.|+++.+.. ..++. .+..+++|++|+|++|.+... + .+..+++|++|+|.++.++.-. ...+++|++
T Consensus 52 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTLQE 125 (330)
T ss_dssp TTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC----SSCCTTCCE
T ss_pred CCCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccC----hhhcccccE
Confidence 4677787766553 23443 456788999999998877654 2 4557888999999888765321 112378999
Q ss_pred EEEeeeEeCCCceeE-EEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCceEEEEeeee
Q 017981 193 LSIKGYIYGTDSVTL-NIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGI 271 (363)
Q Consensus 193 L~L~~c~~~~~~~~l-~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~ 271 (363)
|.+.+|...+. ..- -...++|+.|++.+|........ ......+++|++|.++++....+...-.++|+.+.+..+.
T Consensus 126 L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~ 203 (330)
T 1xku_A 126 LRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIE-NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK 203 (330)
T ss_dssp EECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBC-TTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSC
T ss_pred EECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcC-hhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCc
Confidence 99988765433 111 11237788888877755321000 0011235677777777665443332223556666554332
Q ss_pred ceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCC
Q 017981 272 ECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMP 351 (363)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p 351 (363)
-.. .....+..+++|+.|.++++.+ ..+.. . .+..+++|+.|+++.+.-. .++.-+..++
T Consensus 204 l~~-----------~~~~~~~~l~~L~~L~Ls~n~l---~~~~~--~-~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~ 263 (330)
T 1xku_A 204 ITK-----------VDAASLKGLNNLAKLGLSFNSI---SAVDN--G-SLANTPHLRELHLNNNKLV---KVPGGLADHK 263 (330)
T ss_dssp CCE-----------ECTGGGTTCTTCCEEECCSSCC---CEECT--T-TGGGSTTCCEEECCSSCCS---SCCTTTTTCS
T ss_pred CCc-----------cCHHHhcCCCCCCEEECCCCcC---ceeCh--h-hccCCCCCCEEECCCCcCc---cCChhhccCC
Confidence 110 0122345566666666666554 22211 0 1224455666666655332 1222245566
Q ss_pred CCcceEEeeec
Q 017981 352 KLESIVFEEVR 362 (363)
Q Consensus 352 ~L~~L~l~~~~ 362 (363)
+|+.|+++.++
T Consensus 264 ~L~~L~l~~N~ 274 (330)
T 1xku_A 264 YIQVVYLHNNN 274 (330)
T ss_dssp SCCEEECCSSC
T ss_pred CcCEEECCCCc
Confidence 66666665554
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.12 E-value=1.7e-10 Score=110.55 Aligned_cols=227 Identities=14% Similarity=0.123 Sum_probs=151.7
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (363)
+.++.|+++.+... ...|..+..+++|++|+|++|.+...+ .+..+++|++|+|+++.+.+.. ...+.++++|++|
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEE
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC-HHHhccCCCCcEE
Confidence 57899999876642 233456778999999999999887543 3668999999999999887652 3446889999999
Q ss_pred EEeeeEeCCCcee-EEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEe
Q 017981 194 SIKGYIYGTDSVT-LNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVD 268 (363)
Q Consensus 194 ~L~~c~~~~~~~~-l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~ 268 (363)
.+.+|...+. .. -.+ ..++|+.|++.+|........ .....+++|++|+++++..... .+..+++|+.+.+.
T Consensus 104 ~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 104 NLMGNPYQTL-GVTSLFPNLTNLQTLRIGNVETFSEIRR--IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp ECTTCCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEECT--TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred ECCCCccccc-chhhhhhccCCccEEECCCCccccccCH--hhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 9999986543 11 112 248999999999863221000 0113468999999999876543 24567778888776
Q ss_pred eeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCCh---HHHHH
Q 017981 269 YGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGW---LSLAH 345 (363)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~l~~ 345 (363)
.... .. ....++..+++++.|.++++.+ ..+..........+.+|+.|++..+.. .. ..+..
T Consensus 181 ~n~~--------~~---~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~l~~ 245 (549)
T 2z81_A 181 LSES--------AF---LLEIFADILSSVRYLELRDTNL---ARFQFSPLPVDEVSSPMKKLAFRGSVL-TDESFNELLK 245 (549)
T ss_dssp CSBS--------TT---HHHHHHHSTTTBSEEEEESCBC---TTCCCCCCSSCCCCCCCCEEEEESCEE-EHHHHHHHHG
T ss_pred cCcc--------cc---cchhhHhhcccccEEEccCCcc---ccccccccchhhhhhcccceecccccc-chhHHHHHHH
Confidence 5442 11 1233456789999999999876 332110000122467899999988643 32 23444
Q ss_pred HHHhCCCCcceEEeeec
Q 017981 346 IFSRMPKLESIVFEEVR 362 (363)
Q Consensus 346 ll~~~p~L~~L~l~~~~ 362 (363)
.+..+++|+.|+++.++
T Consensus 246 ~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 246 LLRYILELSEVEFDDCT 262 (549)
T ss_dssp GGGGCTTCCEEEEESCE
T ss_pred Hhhhhcccccccccccc
Confidence 55677888888776543
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.12 E-value=8.4e-12 Score=109.37 Aligned_cols=129 Identities=16% Similarity=0.077 Sum_probs=59.1
Q ss_pred CCceEEEEEcCCCccccCC-cccccCCcccEEEecccccccC--CCcccCcccceeeeeeEE-EccchHHHHhccCCccc
Q 017981 116 RNVREIEISLNDDECIELP-HCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNT-IDNNFSDWLFSKCPALE 191 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le 191 (363)
+++++|+++.+... .++ ..+..+++|++|+|+++.+... ..+..+++|++|+|.++. +..-. ...+..+++|+
T Consensus 32 ~~l~~L~l~~n~i~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGNRIS--HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCC
T ss_pred CCceEEEeeCCcCC--ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCC
Confidence 35666665544321 222 2344466666666666655432 223455666666666654 32211 22244566666
Q ss_pred eEEEeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981 192 DLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP 251 (363)
Q Consensus 192 ~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 251 (363)
+|.+.+|...+. ..-.+ ..++|+.|++.+|........ ....+++|++|+++++..
T Consensus 109 ~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 109 TLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDD---TFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp EEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCEE-CHhHhhCCcCCCEEECCCCcccccCHh---HhccCCCccEEECCCCcc
Confidence 666666553322 10001 125566666655543321000 001245555555555543
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.12 E-value=1.8e-12 Score=125.89 Aligned_cols=127 Identities=15% Similarity=0.044 Sum_probs=53.0
Q ss_pred cCCcccEEEecccccccCCCcccCcccceeeeeeEEEccc-hHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceE
Q 017981 139 TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRL 217 (363)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L 217 (363)
.+++|++|++++|..........+++|++|+|.++.+.+. .+...+..+++|++|.+.+|...+. ...-...++|+.|
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L 404 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHL 404 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEE
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCee
Confidence 4444444444444222222333455555555555544432 1123345556666666665542221 1000012556666
Q ss_pred EEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEe
Q 017981 218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVD 268 (363)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~ 268 (363)
++.+|....... ......+++|++|+++++..... .+..+++|+.+.+.
T Consensus 405 ~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 405 DFQHSTLKRVTE--FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp ECTTSEEESTTT--TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred ECCCCccCCccC--hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence 655554322100 00011345555555555433211 13444555555543
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.12 E-value=1.2e-11 Score=119.70 Aligned_cols=223 Identities=15% Similarity=0.140 Sum_probs=143.4
Q ss_pred hCCceEEEEEcCCCccccCC-cccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccc
Q 017981 115 MRNVREIEISLNDDECIELP-HCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALE 191 (363)
Q Consensus 115 ~~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 191 (363)
.++++.|++..+... .++ ..+..+++|++|+|++|.+...+ .+..+++|++|+|.++.++.- ...++..+++|+
T Consensus 74 l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~ 150 (597)
T 3oja_B 74 FRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLT 150 (597)
T ss_dssp CCCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred CCCCcEEECCCCCCC--CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCC
Confidence 368999999776542 333 46677999999999999888653 246899999999999987643 234467899999
Q ss_pred eEEEeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCc-------------eEEEEeccCcceEEEeecCCCceeee
Q 017981 192 DLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITK-------------YKVIIRAPNLEQLYIRDHGPGLYVVH 257 (363)
Q Consensus 192 ~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~~p~L~~L~l~~~~~~~~~~~ 257 (363)
+|.|.+|.+.+. ..-.+ ..++|+.|++.+|......... ..-....++|+.|.++++....+...
T Consensus 151 ~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 151 TLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp EEECCSSCCCBC-CTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred EEEeeCCcCCCC-ChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence 999999875443 11112 2478999999988654321000 00011223445555554444333333
Q ss_pred cCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC
Q 017981 258 ELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA 337 (363)
Q Consensus 258 ~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 337 (363)
..++|+.+.+..+... ....+..+++|+.|+++++.+ ..+.. . .+..+++|+.|+++++.-
T Consensus 230 ~~~~L~~L~L~~n~l~-------------~~~~l~~l~~L~~L~Ls~N~l---~~~~~--~-~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 230 VNVELTILKLQHNNLT-------------DTAWLLNYPGLVEVDLSYNEL---EKIMY--H-PFVKMQRLERLYISNNRL 290 (597)
T ss_dssp CCSCCCEEECCSSCCC-------------CCGGGGGCTTCSEEECCSSCC---CEEES--G-GGTTCSSCCEEECTTSCC
T ss_pred cCCCCCEEECCCCCCC-------------CChhhccCCCCCEEECCCCcc---CCCCH--H-HhcCccCCCEEECCCCCC
Confidence 3345665555433321 024577889999999999876 33221 1 344678899999988754
Q ss_pred CChHHHHHHHHhCCCCcceEEeeecC
Q 017981 338 CGWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 338 ~~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
.. +......+|+|+.|++..+++
T Consensus 291 ~~---l~~~~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 291 VA---LNLYGQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp CE---EECSSSCCTTCCEEECCSSCC
T ss_pred CC---CCcccccCCCCcEEECCCCCC
Confidence 22 333346689999999988764
No 41
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.11 E-value=3.1e-11 Score=107.01 Aligned_cols=166 Identities=15% Similarity=0.077 Sum_probs=101.0
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
++++.|+++.+.. ..++. +..+++|++|+|++|.+...+....+++|++|+|.++.+.+- .. +..+++|++|.+
T Consensus 63 ~~L~~L~L~~n~i--~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQI--TDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCC--CCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEEC
T ss_pred CCCCEEEccCCcC--CCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEEC
Confidence 5777777766543 23333 566777777777777776555566777777777777766543 22 567777777777
Q ss_pred eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCcee-eecCCCceEEEEeeeecee
Q 017981 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV-VHELHSLTKAVVDYGIECI 274 (363)
Q Consensus 196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~L~~~~l~~~~~~~ 274 (363)
.+|...+. .. -...++|+.|++.+|...... . ...+++|+.|+++++...... +..+++|+.+.+..+.-..
T Consensus 137 ~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~----~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 137 DLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLT----P-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp CSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCB
T ss_pred CCCccCcC-cc-ccCCCCccEEEccCCcCCCCh----h-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCc
Confidence 77765554 22 112367777777777554321 1 234577777777776554322 5566777777665443211
Q ss_pred ccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981 275 LDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM 307 (363)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 307 (363)
.. .+..+++|+.|.++++.+
T Consensus 210 ------------~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 210 ------------VS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp ------------CG-GGTTCTTCCEEEEEEEEE
T ss_pred ------------cc-cccCCCCCCEEEccCCee
Confidence 01 156667777777776654
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.09 E-value=1.6e-11 Score=114.85 Aligned_cols=203 Identities=11% Similarity=0.016 Sum_probs=155.8
Q ss_pred hCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981 115 MRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (363)
Q Consensus 115 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (363)
.++++.|+++.+... .+| .+..+++|++|+|++|.+...+ ...+++|++|+|+++.+++-. +..+++|++|.
T Consensus 41 l~~L~~L~Ls~n~l~--~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSIT--DMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCC--CCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcc--cCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee----cCCCCcCCEEE
Confidence 368999999876543 344 5778999999999999988654 778999999999999886643 67899999999
Q ss_pred EeeeEeCCCceeEEEe-cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeec-CCCceeeecCCCceEEEEeeeec
Q 017981 195 IKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDH-GPGLYVVHELHSLTKAVVDYGIE 272 (363)
Q Consensus 195 L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~-~~~~~~~~~~~~L~~~~l~~~~~ 272 (363)
+.+|...+. . +. .++|+.|.+.+|..... . ...+++|++|.++++ ......+..+++|+.+++..+.-
T Consensus 113 L~~N~l~~l-~---~~~l~~L~~L~l~~N~l~~l-----~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 113 CDTNKLTKL-D---VSQNPLLTYLNCARNTLTEI-----D-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp CCSSCCSCC-C---CTTCTTCCEEECTTSCCSCC-----C-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCC
T ss_pred CCCCcCCee-c---CCCCCcCCEEECCCCcccee-----c-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcc
Confidence 999986665 2 33 48999999999876532 1 245789999999988 44455678889999998875542
Q ss_pred eeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCC
Q 017981 273 CILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPK 352 (363)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~ 352 (363)
.. +. +..+++++.|.++.+.+ ..+ .+..+++|+.|+++.+.-.. ++ +..+++
T Consensus 183 ~~------------l~--l~~l~~L~~L~l~~N~l---~~~------~l~~l~~L~~L~Ls~N~l~~---ip--~~~l~~ 234 (457)
T 3bz5_A 183 TE------------LD--VSQNKLLNRLNCDTNNI---TKL------DLNQNIQLTFLDCSSNKLTE---ID--VTPLTQ 234 (457)
T ss_dssp CC------------CC--CTTCTTCCEEECCSSCC---SCC------CCTTCTTCSEEECCSSCCSC---CC--CTTCTT
T ss_pred ce------------ec--cccCCCCCEEECcCCcC---Cee------ccccCCCCCEEECcCCcccc---cC--ccccCC
Confidence 11 11 67789999999999877 332 24567889999999886533 33 678999
Q ss_pred CcceEEeeecC
Q 017981 353 LESIVFEEVRM 363 (363)
Q Consensus 353 L~~L~l~~~~~ 363 (363)
|+.|+++.+++
T Consensus 235 L~~L~l~~N~l 245 (457)
T 3bz5_A 235 LTYFDCSVNPL 245 (457)
T ss_dssp CSEEECCSSCC
T ss_pred CCEEEeeCCcC
Confidence 99999988764
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.09 E-value=3.8e-10 Score=108.49 Aligned_cols=104 Identities=19% Similarity=0.108 Sum_probs=61.1
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
.+++.|+++.+... .-.|..+..+++|++|+|++|.+...+.. .+++|++|+|+++.+.+-.+...+.++++|++|.+
T Consensus 76 ~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L 153 (562)
T 3a79_B 76 SELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153 (562)
T ss_dssp TTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEE
T ss_pred CCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEec
Confidence 46777777655431 12244455677777777777776644443 67777777777777654222234566777777777
Q ss_pred eeeEeCCCceeEEEecCCc--ceEEEEecCC
Q 017981 196 KGYIYGTDSVTLNIPSLTL--KRLRLELEAP 224 (363)
Q Consensus 196 ~~c~~~~~~~~l~i~~~~L--~~L~l~~~~~ 224 (363)
.+|..... ..- ..++| +.|.+.+|..
T Consensus 154 ~~n~l~~~-~~~--~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 154 SAAKFRQL-DLL--PVAHLHLSCILLDLVSY 181 (562)
T ss_dssp ECSBCCTT-TTG--GGTTSCEEEEEEEESSC
T ss_pred CCCccccC-chh--hhhhceeeEEEeecccc
Confidence 77664322 110 11334 6666666644
No 44
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.09 E-value=1.4e-11 Score=115.35 Aligned_cols=107 Identities=14% Similarity=0.167 Sum_probs=56.3
Q ss_pred CCceEEEEEcCCCccccC-CcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchH-HHHhccCCccc
Q 017981 116 RNVREIEISLNDDECIEL-PHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFS-DWLFSKCPALE 191 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l-~~ll~~cp~Le 191 (363)
.+++.|++..+... ..+ +..+..+++|++|+|++|.+... ..+..+++|++|+|.++.+++... ...+..+++|+
T Consensus 54 ~~L~~L~L~~n~~~-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 54 QDLQFLKVEQQTPG-LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp TTCCEEECCCCSTT-CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred ccccEEECcCCccc-ceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 35666666544321 122 23344566677777766665432 234456667777776666554311 12355666677
Q ss_pred eEEEeeeEeCCCceeE--EEecCCcceEEEEecCC
Q 017981 192 DLSIKGYIYGTDSVTL--NIPSLTLKRLRLELEAP 224 (363)
Q Consensus 192 ~L~L~~c~~~~~~~~l--~i~~~~L~~L~l~~~~~ 224 (363)
+|.|.+|...+. ... -...++|+.|++.+|..
T Consensus 133 ~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 133 MLVLRDNNIKKI-QPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp EEECCSSBCCSC-CCCGGGGGCTTCCEEECTTCCB
T ss_pred EEECCCCccCcc-CcccccCCCCcccEEeCCCCcc
Confidence 777766654332 111 11236666666666643
No 45
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.09 E-value=2.3e-12 Score=128.46 Aligned_cols=219 Identities=17% Similarity=0.173 Sum_probs=140.3
Q ss_pred CCceEEEEEcCCCccccCCc--ccccCCcccEEEecccccccC-CC--cccCcccceeeeeeEEEccchHH--HHhccCC
Q 017981 116 RNVREIEISLNDDECIELPH--CIYTCKTLEVLKLDMNFFIKT-PP--TIFFPSAKILHVILNTIDNNFSD--WLFSKCP 188 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~-~~--~~~~~~L~~L~L~~~~~~~~~l~--~ll~~cp 188 (363)
++++.|+++.+.. ...+|. .+..+++|++|+|++|.+... +. ...+++|++|+|+++.+.+.... ..+.+|+
T Consensus 100 ~~L~~L~Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 100 ASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp TTCCEEECCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCEEECCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 4778887765543 223455 667788888888888877643 21 25778888888888877665222 2367888
Q ss_pred ccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEE
Q 017981 189 ALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKA 265 (363)
Q Consensus 189 ~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~ 265 (363)
+|++|.+.+|...+. ... ...++|+.|++.+|..... ... ...+++|++|+++++..... .+..+++|+.+
T Consensus 179 ~L~~L~Ls~n~l~~~-~~~-~~l~~L~~L~Ls~n~l~~~---~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 179 ELKHLAISGNKISGD-VDV-SRCVNLEFLDVSSNNFSTG---IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp TCCEEECCSSEEESC-CBC-TTCTTCCEEECCSSCCCSC---CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred CCCEEECCCCccccc-CCc-ccCCcCCEEECcCCcCCCC---Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 888888888875443 221 2347888888888866432 111 34568888888888766532 35677888888
Q ss_pred EEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCC-CCCCcceEEEEeccCCChHHHH
Q 017981 266 VVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFP-TFPFLNRLEVEGVGACGWLSLA 344 (363)
Q Consensus 266 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~l~ 344 (363)
++..+..... . +. ..+++|+.|.++.+.+ .. .... .+. .+++|++|++..+.-.. .++
T Consensus 253 ~Ls~n~l~~~--~-~~----------~~l~~L~~L~L~~n~l---~~--~ip~-~~~~~~~~L~~L~Ls~n~l~~--~~p 311 (768)
T 3rgz_A 253 NISSNQFVGP--I-PP----------LPLKSLQYLSLAENKF---TG--EIPD-FLSGACDTLTGLDLSGNHFYG--AVP 311 (768)
T ss_dssp ECCSSCCEES--C-CC----------CCCTTCCEEECCSSEE---EE--SCCC-CSCTTCTTCSEEECCSSEEEE--CCC
T ss_pred ECCCCcccCc--c-Cc----------cccCCCCEEECcCCcc---CC--ccCH-HHHhhcCcCCEEECcCCcCCC--ccc
Confidence 7765542110 0 00 1577888888888755 21 1111 222 34789999998874311 133
Q ss_pred HHHHhCCCCcceEEeeec
Q 017981 345 HIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 345 ~ll~~~p~L~~L~l~~~~ 362 (363)
..+.++++|++|++..++
T Consensus 312 ~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNN 329 (768)
T ss_dssp GGGGGCTTCCEEECCSSE
T ss_pred hHHhcCCCccEEECCCCc
Confidence 456889999999998765
No 46
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.08 E-value=7.7e-12 Score=124.70 Aligned_cols=219 Identities=18% Similarity=0.091 Sum_probs=140.4
Q ss_pred CCceEEEEEcCCCccccCCccc-ccCCcccEEEecccccccCCC-----cccCcccceeeeeeEEEccc-hHHHHhccCC
Q 017981 116 RNVREIEISLNDDECIELPHCI-YTCKTLEVLKLDMNFFIKTPP-----TIFFPSAKILHVILNTIDNN-FSDWLFSKCP 188 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~~~~-----~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp 188 (363)
.+++.|+++.+.. ....|..+ .++++|++|+|++|.+..... ...+++|++|+|.++.+.+. . ...++
T Consensus 126 ~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~ 200 (768)
T 3rgz_A 126 SGLKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCV 200 (768)
T ss_dssp TTCCEEECCSSEE-ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----CTTCT
T ss_pred CCCCEEECcCCcc-CCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC----cccCC
Confidence 5888888876543 22344433 568899999999888765322 45788999999999988765 3 26789
Q ss_pred ccceEEEeeeEeCCCceeEEEe-cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCc-eeeecCCCceEEE
Q 017981 189 ALEDLSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL-YVVHELHSLTKAV 266 (363)
Q Consensus 189 ~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~L~~~~ 266 (363)
+|++|++.+|...+.... +. .++|+.|++.+|..... .......+++|++|+++++.... .....+++|+.++
T Consensus 201 ~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGD---FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSC---HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred cCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCc---ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 999999999876543122 33 48899999998875421 11112356889999998875532 2223678888888
Q ss_pred EeeeeceeccCCCchhhHHHHHHHh-hccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHH
Q 017981 267 VDYGIECILDYDSPEDVAQAVVDML-RDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAH 345 (363)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 345 (363)
+..+..... +...+ ..+++|+.|+++++.+ ..... . .+..+++|++|++..+.... ..-..
T Consensus 276 L~~n~l~~~-----------ip~~~~~~~~~L~~L~Ls~n~l---~~~~p--~-~~~~l~~L~~L~L~~n~l~~-~ip~~ 337 (768)
T 3rgz_A 276 LAENKFTGE-----------IPDFLSGACDTLTGLDLSGNHF---YGAVP--P-FFGSCSLLESLALSSNNFSG-ELPMD 337 (768)
T ss_dssp CCSSEEEES-----------CCCCSCTTCTTCSEEECCSSEE---EECCC--G-GGGGCTTCCEEECCSSEEEE-ECCHH
T ss_pred CcCCccCCc-----------cCHHHHhhcCcCCEEECcCCcC---CCccc--h-HHhcCCCccEEECCCCcccC-cCCHH
Confidence 765542110 11112 2348899999988765 32111 1 23456788888888764310 11123
Q ss_pred HHHhCCCCcceEEeeec
Q 017981 346 IFSRMPKLESIVFEEVR 362 (363)
Q Consensus 346 ll~~~p~L~~L~l~~~~ 362 (363)
.+..+++|+.|+++.++
T Consensus 338 ~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp HHTTCTTCCEEECCSSE
T ss_pred HHhcCCCCCEEeCcCCc
Confidence 46788999999888765
No 47
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.07 E-value=1.2e-10 Score=110.96 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=47.1
Q ss_pred hccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981 292 RDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 292 ~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
..+++++.|+++++.+ ... ... .+..+++|+.|+++.+.-.+...++..+..+++|+.|+++.+++
T Consensus 321 ~~l~~L~~L~Ls~n~l---~~~--~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLL---TDT--VFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp SSCCCCCEEECCSSCC---CTT--TTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred hhCCcccEEEeECCcc---Chh--hhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence 4667788888877655 221 112 34567889999999887655556777788999999999987764
No 48
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.07 E-value=4.2e-12 Score=116.31 Aligned_cols=222 Identities=12% Similarity=0.064 Sum_probs=145.8
Q ss_pred ccCCcccccCCcccEEEecccccccC------CCcccCcccceeeeeeEEEc---cc------hHHHHhccCCccceEEE
Q 017981 131 IELPHCIYTCKTLEVLKLDMNFFIKT------PPTIFFPSAKILHVILNTID---NN------FSDWLFSKCPALEDLSI 195 (363)
Q Consensus 131 ~~l~~~~~~~~~L~~L~L~~~~~~~~------~~~~~~~~L~~L~L~~~~~~---~~------~l~~ll~~cp~Le~L~L 195 (363)
..++..+..+++|++|+|++|.+... .....+++|++|+|.++.+. +. .+...+..+++|++|.|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 35666677799999999999987742 12457999999999997432 21 23344678999999999
Q ss_pred eeeEeCCCceeE----E-EecCCcceEEEEecCCccccCC-ceEEEEec---------cCcceEEEeecCCCce------
Q 017981 196 KGYIYGTDSVTL----N-IPSLTLKRLRLELEAPEEDYIT-KYKVIIRA---------PNLEQLYIRDHGPGLY------ 254 (363)
Q Consensus 196 ~~c~~~~~~~~l----~-i~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~---------p~L~~L~l~~~~~~~~------ 254 (363)
.+|.+... ... . ..+++|+.|++.+|........ ........ |+|++|.++++.....
T Consensus 102 s~n~l~~~-~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 102 SDNAFGPT-AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CSCCCCTT-THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCcCCHH-HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 99986542 111 1 2358999999999976421000 00001112 8999999999876522
Q ss_pred -eeecCCCceEEEEeeeeceeccCCCchhhHHHHHH-HhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEE
Q 017981 255 -VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVD-MLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEV 332 (363)
Q Consensus 255 -~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l 332 (363)
.+..+++|+.+.+..+.-. .... ..+.. .+..+++|+.|.++++.+.+ ........ .+..+++|+.|++
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~------~~g~-~~l~~~~l~~~~~L~~L~Ls~n~l~~-~g~~~l~~-~l~~~~~L~~L~L 251 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIR------PEGI-EHLLLEGLAYCQELKVLDLQDNTFTH-LGSSALAI-ALKSWPNLRELGL 251 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCC------HHHH-HHHHHTTGGGCTTCCEEECCSSCCHH-HHHHHHHH-HGGGCTTCCEEEC
T ss_pred HHHHhCCCcCEEECcCCCCC------HhHH-HHHHHHHhhcCCCccEEECcCCCCCc-HHHHHHHH-HHccCCCcCEEEC
Confidence 2457889999988755321 1111 12333 77889999999999987611 00011111 3446778999999
Q ss_pred EeccCCChHH---HHHHHHh--CCCCcceEEeeecC
Q 017981 333 EGVGACGWLS---LAHIFSR--MPKLESIVFEEVRM 363 (363)
Q Consensus 333 ~~~~~~~~~~---l~~ll~~--~p~L~~L~l~~~~~ 363 (363)
+.|.- +..+ +...++. +|+|+.|++..+++
T Consensus 252 ~~n~i-~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 252 NDCLL-SARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp TTCCC-CHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred CCCCC-chhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 98864 4443 3445544 89999999998764
No 49
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.07 E-value=5.3e-12 Score=109.87 Aligned_cols=127 Identities=15% Similarity=0.058 Sum_probs=76.1
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
++++++.+..+... .+ ..+..+++|++|++++|.+...+....+++|++|+|.++.+++-. ...+..+++|++|.+
T Consensus 41 ~~L~~L~l~~~~i~--~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIK--SV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCC--CC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcc--cc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCEEEC
Confidence 57787777655431 22 245668888888888887776555667888888888888765431 233567788888888
Q ss_pred eeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecC
Q 017981 196 KGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHG 250 (363)
Q Consensus 196 ~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 250 (363)
.+|.+.+. ..-.+ ..++|+.|++.+|........ ....+++|++|+++++.
T Consensus 117 ~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 117 VENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKG---VFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp TTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSC
T ss_pred CCCcCCcc-CHHHhccCCCCCEEECCCCccCccCHH---HhccCccCCEEECCCCC
Confidence 88765443 11111 235677777776654321000 01234566666666553
No 50
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.06 E-value=2e-10 Score=109.97 Aligned_cols=63 Identities=13% Similarity=0.208 Sum_probs=39.8
Q ss_pred ccCcceEEEeecCCCcee------eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981 238 APNLEQLYIRDHGPGLYV------VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM 307 (363)
Q Consensus 238 ~p~L~~L~l~~~~~~~~~------~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 307 (363)
+++|++|+++++...... ...++.|+.+.+..... .......+...+..+++++.|.++.+..
T Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l-------~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL-------TDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp TTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE-------EHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred cccccEEEccCCccccccccccchhhhhhcccceecccccc-------chhHHHHHHHHhhhhccccccccccccc
Confidence 578888888876554321 23466777777765432 2222333556667788888888887654
No 51
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=2e-11 Score=122.06 Aligned_cols=106 Identities=13% Similarity=0.034 Sum_probs=73.6
Q ss_pred CCceEEEEEcCCCccccCCc--ccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCc-cce
Q 017981 116 RNVREIEISLNDDECIELPH--CIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPA-LED 192 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~-Le~ 192 (363)
++++.|++..+... .+|. .+..+++|+.|+|++|.+...|.+..+++|+.|+|.++.+. .+..-+..+++ |++
T Consensus 548 ~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG 623 (876)
T ss_dssp TTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE
T ss_pred CCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCE
Confidence 37888888777653 7777 77788899999999888775566667888899999888776 23333667787 888
Q ss_pred EEEeeeEeCCCceeEEE-ecCCcceEEEEecCCc
Q 017981 193 LSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPE 225 (363)
Q Consensus 193 L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~ 225 (363)
|.|.+|.+..+...+.. ..++|+.|++.+|...
T Consensus 624 L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp EECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred EECcCCCCCcCchhhhccccCCCCEEECcCCcCC
Confidence 88888875544111111 1134777777777653
No 52
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.04 E-value=2.9e-11 Score=117.37 Aligned_cols=105 Identities=17% Similarity=0.069 Sum_probs=46.7
Q ss_pred CceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (363)
+++.|+++.+.. ....|..+.++++|++|+|++|.+... ..+..+++|++|+|.++.+.+-. ...+..+++|++|.
T Consensus 58 ~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 58 NLTFLDLTRCQI-YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLY 135 (606)
T ss_dssp TCSEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG-GSCCTTCTTCCEEE
T ss_pred cceEEECCCCcc-ceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC-cchhccCCcccEEE
Confidence 455555544332 112233444455555555555544322 12335555555555555544321 11134555555555
Q ss_pred EeeeEeCCCceeEEEecCCcceEEEEecC
Q 017981 195 IKGYIYGTDSVTLNIPSLTLKRLRLELEA 223 (363)
Q Consensus 195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~ 223 (363)
+.+|...+.........++|+.|++.+|.
T Consensus 136 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp CCSSCCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred CCCCcccccCcccccCCcccCEEEcccCc
Confidence 55554332200001113555555555554
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.03 E-value=3.2e-12 Score=113.65 Aligned_cols=221 Identities=12% Similarity=0.046 Sum_probs=137.6
Q ss_pred CCceEEEEEcCCCc-cccCCcccccCCcccEEEecc-cccccC-C-CcccCcccceeeeeeEEEccchHHHHhccCCccc
Q 017981 116 RNVREIEISLNDDE-CIELPHCIYTCKTLEVLKLDM-NFFIKT-P-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALE 191 (363)
Q Consensus 116 ~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~-~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 191 (363)
.++++|++..+... ...+|..+..+++|++|+|++ +.+... | .+..+++|++|+|.++.+.+. +...+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCC
Confidence 46788888766542 126777788888899999884 666532 2 355788889999988877643 223366788899
Q ss_pred eEEEeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEecc-CcceEEEeecCCCce---eeecCCCceEEE
Q 017981 192 DLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAP-NLEQLYIRDHGPGLY---VVHELHSLTKAV 266 (363)
Q Consensus 192 ~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p-~L~~L~l~~~~~~~~---~~~~~~~L~~~~ 266 (363)
+|++.+|.+.+. ..-.+ ..++|+.|++.+|........ .....+ +|++|.++++..... .+..+. |+.++
T Consensus 129 ~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 129 TLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPD---SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp EEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCG---GGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred EEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCH---HHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 998888875432 11111 247888888888865421000 012234 788888887654322 233444 77776
Q ss_pred EeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHH
Q 017981 267 VDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHI 346 (363)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l 346 (363)
+..+.... .....+..+++|+.|.++.+.+ ..... .+..+++|++|+++.+.-.+ .++..
T Consensus 204 Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l---~~~~~----~~~~l~~L~~L~Ls~N~l~~--~~p~~ 263 (313)
T 1ogq_A 204 LSRNMLEG-----------DASVLFGSDKNTQKIHLAKNSL---AFDLG----KVGLSKNLNGLDLRNNRIYG--TLPQG 263 (313)
T ss_dssp CCSSEEEE-----------CCGGGCCTTSCCSEEECCSSEE---CCBGG----GCCCCTTCCEEECCSSCCEE--CCCGG
T ss_pred CcCCcccC-----------cCCHHHhcCCCCCEEECCCCce---eeecC----cccccCCCCEEECcCCcccC--cCChH
Confidence 65443211 0234466788888888888765 32111 23456778888888765321 13344
Q ss_pred HHhCCCCcceEEeeec
Q 017981 347 FSRMPKLESIVFEEVR 362 (363)
Q Consensus 347 l~~~p~L~~L~l~~~~ 362 (363)
+..+++|+.|+++.++
T Consensus 264 l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNN 279 (313)
T ss_dssp GGGCTTCCEEECCSSE
T ss_pred HhcCcCCCEEECcCCc
Confidence 6778888888888765
No 54
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.03 E-value=3.8e-11 Score=117.08 Aligned_cols=223 Identities=10% Similarity=-0.006 Sum_probs=143.4
Q ss_pred CCceEEEEEcCCCccc----------------cCCcccc--cCCcccEEEecccccccC--CCcccCcccceeeeeeEE-
Q 017981 116 RNVREIEISLNDDECI----------------ELPHCIY--TCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNT- 174 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~- 174 (363)
.+++.|+++.+..... .+|..+. ++++|++|+|++|.+... ..+..+++|++|+|.++.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 5899999987764220 1898888 899999999999987653 345689999999999998
Q ss_pred Ecc-c---hHHHH--hccCCccceEEEeeeEeCCCceeE-EE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEE
Q 017981 175 IDN-N---FSDWL--FSKCPALEDLSIKGYIYGTDSVTL-NI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYI 246 (363)
Q Consensus 175 ~~~-~---~l~~l--l~~cp~Le~L~L~~c~~~~~~~~l-~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l 246 (363)
+++ . .+..+ +..+++|++|.+.+|.+..+ ... .+ ..++|+.|++.+|..... .. ....+++|++|.+
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i-p~~~~l~~l~~L~~L~L~~N~l~g~---ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF-PVETSLQKMKKLGMLECLYNQLEGK---LP-AFGSEIKLASLNL 360 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC-CCHHHHTTCTTCCEEECCSCCCEEE---CC-CCEEEEEESEEEC
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCCcc-CchhhhccCCCCCEEeCcCCcCccc---hh-hhCCCCCCCEEEC
Confidence 765 2 23332 24569999999999876544 210 12 247899999999876522 11 2245688999998
Q ss_pred eecCCCce--eeecCCC-ceEEEEeeeeceeccCCCchhhHHHHHHHhhc--cCcceEEEEeCCccccccccccccCCCC
Q 017981 247 RDHGPGLY--VVHELHS-LTKAVVDYGIECILDYDSPEDVAQAVVDMLRD--IKNIKSLSLSSGTMFALDRLDYANDHSF 321 (363)
Q Consensus 247 ~~~~~~~~--~~~~~~~-L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--l~~l~~L~l~~~~~~~~~~l~~~~~~~~ 321 (363)
+++....+ .+..+++ |+.+.+..+.-.. +...+.. +++|+.|+++.+.+ ..... + .+
T Consensus 361 ~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~------------lp~~~~~~~l~~L~~L~Ls~N~l---~~~~p--~-~l 422 (636)
T 4eco_A 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKY------------IPNIFDAKSVSVMSAIDFSYNEI---GSVDG--K-NF 422 (636)
T ss_dssp CSSEEEECCTTSEEECTTCCEEECCSSCCSS------------CCSCCCTTCSSCEEEEECCSSCT---TTTTT--C-SS
T ss_pred CCCccccccHhhhhhcccCcEEEccCCcCcc------------cchhhhhcccCccCEEECcCCcC---CCcch--h-hh
Confidence 88754322 2566777 8888776544211 1112222 33788888887765 22111 1 12
Q ss_pred C-------CCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981 322 P-------TFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 322 ~-------~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
+ .+.+|+.|+++.+.-.. .-..++..+++|+.|+++.+++
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISK--FPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCS--CCTHHHHTTCCCSEEECCSSCC
T ss_pred cccccccccCCCCCEEECcCCccCc--CCHHHHccCCCCCEEECCCCCC
Confidence 2 44577788877765421 1223556678888887776653
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.02 E-value=1.7e-10 Score=111.88 Aligned_cols=62 Identities=15% Similarity=0.027 Sum_probs=29.0
Q ss_pred eccCcceEEEeecCC-CceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981 237 RAPNLEQLYIRDHGP-GLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM 307 (363)
Q Consensus 237 ~~p~L~~L~l~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 307 (363)
.+|+|++|.++++.. ....+..+++|+.+++..+.....+ .....+..+++|+.|.++.+.+
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~---------~~~~~~~~~~~L~~L~L~~n~l 388 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSG---------CCSYSDLGTNSLRHLDLSFNGA 388 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEE---------ECCHHHHCCSCCCEEECCSCSE
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCc---------chhhhhccCCcccEeECCCCcc
Confidence 445555555555421 1223445555555555433211000 0123456667777777766544
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.02 E-value=1.4e-10 Score=116.78 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=54.2
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CC--cccCcccceeeeeeEEEccchHHHHhccCCccc
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALE 191 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 191 (363)
.+++.|+++.+.. ....|..+..+++|++|+|++|.+... .. +..+++|++|+|+++.+.+......+.++++|+
T Consensus 73 ~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 73 PNLRILDLGSSKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp TTCCEEECTTCCC-CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred CCCCEEECCCCcC-cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 4677777765543 223455666677788888877776642 22 456777888888777765543334466777777
Q ss_pred eEEEeeeEe
Q 017981 192 DLSIKGYIY 200 (363)
Q Consensus 192 ~L~L~~c~~ 200 (363)
+|.|.+|.+
T Consensus 152 ~L~Ls~N~i 160 (844)
T 3j0a_A 152 SIDFSSNQI 160 (844)
T ss_dssp EEEEESSCC
T ss_pred EEECCCCcC
Confidence 777777654
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.02 E-value=1.4e-11 Score=107.93 Aligned_cols=198 Identities=14% Similarity=0.101 Sum_probs=94.8
Q ss_pred CcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeE-eCCCceeEEE-ecCCcce
Q 017981 141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI-YGTDSVTLNI-PSLTLKR 216 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~-~~~~~~~l~i-~~~~L~~ 216 (363)
++|++|+|+++.+...+ .+..+++|++|+|.++.+++-. ...+.++++|++|.+.+|. .... ..-.+ ..++|+.
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCE
Confidence 46666666666555432 2445666666666666543321 1224556666666666653 2222 00011 1256666
Q ss_pred EEEEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhc
Q 017981 217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRD 293 (363)
Q Consensus 217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (363)
|++.+|....... .....+++|++|.++++...... +..+++|+.+.+..+.-... ....+..
T Consensus 110 L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~ 175 (285)
T 1ozn_A 110 LHLDRCGLQELGP---GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-----------PERAFRG 175 (285)
T ss_dssp EECTTSCCCCCCT---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-----------CTTTTTT
T ss_pred EECCCCcCCEECH---hHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-----------CHHHhcC
Confidence 6666665432100 00123456666666665443322 34556666665543321100 1112445
Q ss_pred cCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981 294 IKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 294 l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
+++|+.|.++++.+ ..+. .. .+..+++|+.|+++.+.-.+ .....+..+|+|+.|+++.|+
T Consensus 176 l~~L~~L~l~~n~l---~~~~--~~-~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 176 LHSLDRLLLHQNRV---AHVH--PH-AFRDLGRLMTLYLFANNLSA--LPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTCCEEECCSSCC---CEEC--TT-TTTTCTTCCEEECCSSCCSC--CCHHHHTTCTTCCEEECCSSC
T ss_pred ccccCEEECCCCcc---cccC--Hh-HccCcccccEeeCCCCcCCc--CCHHHcccCcccCEEeccCCC
Confidence 56666666666544 2211 11 23345566666666553322 112344566666666666553
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.02 E-value=2.9e-11 Score=116.39 Aligned_cols=232 Identities=11% Similarity=0.061 Sum_probs=123.9
Q ss_pred CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCC-cccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPP-TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
.++++.+..........+..+..+++|++|++.++.+...+. ...+ +|++|++.++.+..-. ...+++|++|.+
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~----~~~l~~L~~L~l 332 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFP----TLKLKSLKRLTF 332 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCC----BCBCSSCCEEEE
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccC----cccccccCEEeC
Confidence 456666655432233566677779999999999998876543 3355 8999999988775221 146777777777
Q ss_pred eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce--eeecCCCceEEEEeeeece
Q 017981 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY--VVHELHSLTKAVVDYGIEC 273 (363)
Q Consensus 196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~--~~~~~~~L~~~~l~~~~~~ 273 (363)
.+|...+. ... ...++|+.|++.+|...... ........+++|++|.++++..... .+..+++|+.+.+..+...
T Consensus 333 ~~n~~~~~-~~~-~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~ 409 (570)
T 2z63_A 333 TSNKGGNA-FSE-VDLPSLEFLDLSRNGLSFKG-CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409 (570)
T ss_dssp ESCBSCCB-CCC-CBCTTCCEEECCSSCCBEEE-EEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEE
T ss_pred cCCccccc-ccc-ccCCCCCEEeCcCCccCccc-cccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccc
Confidence 77663332 111 23466677766666432110 0000012345555555555433221 1444555555544332211
Q ss_pred eccC---C-----------CchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCC
Q 017981 274 ILDY---D-----------SPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACG 339 (363)
Q Consensus 274 ~~~~---~-----------~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 339 (363)
.... + ..+.........+.++++|+.|.++++.+ ..- .... .+..+++|+.|+++.+.-.+
T Consensus 410 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~-~~p~-~~~~l~~L~~L~l~~n~l~~ 484 (570)
T 2z63_A 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF---QEN-FLPD-IFTELRNLTFLDLSQCQLEQ 484 (570)
T ss_dssp SCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE---GGG-EECS-CCTTCTTCCEEECTTSCCCE
T ss_pred cccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcC---ccc-cchh-hhhcccCCCEEECCCCcccc
Confidence 0000 0 00000000223455667777777776654 200 0011 34566778888887764311
Q ss_pred hHHHHHHHHhCCCCcceEEeeecC
Q 017981 340 WLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 340 ~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
..+..+..+|+|+.|++..+++
T Consensus 485 --~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 485 --LSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp --ECTTTTTTCTTCCEEECCSSCC
T ss_pred --CChhhhhcccCCCEEeCCCCcC
Confidence 1133456788899998887653
No 59
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.01 E-value=1.6e-10 Score=73.27 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=33.7
Q ss_pred CCcccCCCChHHHHHHhcCCChhHhhhhhhhccchhhhhc
Q 017981 7 TEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWT 46 (363)
Q Consensus 7 ~~d~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l~~ 46 (363)
+.+.+..||+|++.+||++||.+|+++++.|||+|+.+..
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 4567999999999999999999999999999999997543
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.00 E-value=1.1e-11 Score=111.03 Aligned_cols=219 Identities=12% Similarity=0.076 Sum_probs=137.9
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
.+++.|++..+... ...|..+..+++|++|+|++|.+...+.. .+++|++|++.++.+..-. ...+.++++|++|.+
T Consensus 78 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 78 QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPN-LPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEM 154 (332)
T ss_dssp TTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCCSS-CCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEEEC
T ss_pred CCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccCcc-ccccCCEEECCCCccCccC-HhHhCCCccCCEEEC
Confidence 47888888766542 22345566788888888888877744332 2378888988888765431 234678899999999
Q ss_pred eeeEeCC--CceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeee
Q 017981 196 KGYIYGT--DSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYG 270 (363)
Q Consensus 196 ~~c~~~~--~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~ 270 (363)
.+|.... . ..-.+...+|+.|++.+|........ -.++|++|+++++..... .+..+++|+.+.+..+
T Consensus 155 ~~n~l~~~~~-~~~~~~~l~L~~L~l~~n~l~~l~~~------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 155 GGNPLENSGF-EPGAFDGLKLNYLRISEAKLTGIPKD------LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp CSCCCBGGGS-CTTSSCSCCCSCCBCCSSBCSSCCSS------SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred CCCccccCCC-CcccccCCccCEEECcCCCCCccCcc------ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 8886532 1 11111122788888888875432111 127899999998766543 3667788888877654
Q ss_pred eceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCC--hHHHHH--H
Q 017981 271 IECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACG--WLSLAH--I 346 (363)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~l~~--l 346 (363)
.-.. . ....+..+++|+.|+++++.+ ..+.. .+..+++|+.|+++.+.-.. ...+.. +
T Consensus 228 ~l~~---~--------~~~~~~~l~~L~~L~L~~N~l---~~lp~----~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 228 QIRM---I--------ENGSLSFLPTLRELHLDNNKL---SRVPA----GLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289 (332)
T ss_dssp CCCC---C--------CTTGGGGCTTCCEEECCSSCC---CBCCT----TGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred cCCc---C--------ChhHhhCCCCCCEEECCCCcC---eecCh----hhhcCccCCEEECCCCCCCccChhHcccccc
Confidence 3211 0 122467889999999999877 43322 34467789999998875311 111110 0
Q ss_pred HHhCCCCcceEEeeec
Q 017981 347 FSRMPKLESIVFEEVR 362 (363)
Q Consensus 347 l~~~p~L~~L~l~~~~ 362 (363)
....+.|+.|++..+.
T Consensus 290 ~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNP 305 (332)
T ss_dssp CSSSCCBSEEECCSSS
T ss_pred ccccccccceEeecCc
Confidence 1125678888887764
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.00 E-value=1.6e-12 Score=115.15 Aligned_cols=202 Identities=13% Similarity=0.026 Sum_probs=125.1
Q ss_pred CCceEEEEEcCCCccc-cCCcccccCCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981 116 RNVREIEISLNDDECI-ELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (363)
++++.|++..+..... ..+..+..+++|++|+|++|.+...+ .+..+++|++|+|.++.+.+......+..+++|++|
T Consensus 52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 131 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131 (306)
T ss_dssp TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE
T ss_pred ccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEE
Confidence 4788888866543211 22445556788888888888766432 355788888888888877654322346778888888
Q ss_pred EEeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEee
Q 017981 194 SIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDY 269 (363)
Q Consensus 194 ~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~ 269 (363)
.+.+|...+. ..-.+ ..++|+.|.+.+|..... ........+++|++|+++++..... .+..+++|+.+.+..
T Consensus 132 ~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 132 DISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp ECTTSCCEEC-STTTTTTCTTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ECCCCcCCcc-chhhcccCcCCCEEECCCCccccc--cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence 8888763221 00001 237888888887754320 0111223467888888888766543 355678888887765
Q ss_pred eeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCC-CCcceEEEEeccC
Q 017981 270 GIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTF-PFLNRLEVEGVGA 337 (363)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~-~~L~~L~l~~~~~ 337 (363)
+.-.. . ....+..+++|+.|+++++.+ ..... . .+..+ ++|+.|+++++.-
T Consensus 209 N~l~~---~--------~~~~~~~l~~L~~L~L~~N~l---~~~~~--~-~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 209 NNFFS---L--------DTFPYKCLNSLQVLDYSLNHI---MTSKK--Q-ELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp SCCSB---C--------CSGGGTTCTTCCEEECTTSCC---CBCSS--S-SCCCCCTTCCEEECTTCCE
T ss_pred CccCc---c--------ChhhccCcccCCEeECCCCCC---cccCH--H-HHHhhhccCCEEEccCCCe
Confidence 43211 0 111256789999999999876 33221 1 23344 4899999988754
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.00 E-value=1.6e-12 Score=115.52 Aligned_cols=201 Identities=16% Similarity=0.058 Sum_probs=98.8
Q ss_pred cCCcccEEEecccccccC-CC-c--ccCcccceeeeeeEEEccc--hHHHHhc-cCCccceEEEeeeEeCCCceeEEE-e
Q 017981 139 TCKTLEVLKLDMNFFIKT-PP-T--IFFPSAKILHVILNTIDNN--FSDWLFS-KCPALEDLSIKGYIYGTDSVTLNI-P 210 (363)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~-~~-~--~~~~~L~~L~L~~~~~~~~--~l~~ll~-~cp~Le~L~L~~c~~~~~~~~l~i-~ 210 (363)
.+++|++|+|++|.+... +. . ..+++|++|+|.++.+++. .+..+.. .+++|++|.+.+|...+. ..-.+ .
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhcc
Confidence 355666666666655431 21 1 4556666666666655443 1222111 126666666666654333 10011 2
Q ss_pred cCCcceEEEEecCCccccCCceEE-EEeccCcceEEEeecCCCce------eeecCCCceEEEEeeeeceeccCCCchhh
Q 017981 211 SLTLKRLRLELEAPEEDYITKYKV-IIRAPNLEQLYIRDHGPGLY------VVHELHSLTKAVVDYGIECILDYDSPEDV 283 (363)
Q Consensus 211 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~~p~L~~L~l~~~~~~~~------~~~~~~~L~~~~l~~~~~~~~~~~~~~~~ 283 (363)
.++|+.|++.+|...........+ ....++|++|+++++..... .+..+++|+.+++..+.-....
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------- 244 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA------- 244 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-------
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc-------
Confidence 356666666665432100000000 02346666666666554311 1234456666655433221100
Q ss_pred HHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981 284 AQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 284 ~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
....+..+++|+.|.++.+.+ ..+.. .++ ++|+.|+++.+.-.+. +. +..+|+|+.|+++.|++
T Consensus 245 ---~~~~~~~l~~L~~L~Ls~N~l---~~ip~----~~~--~~L~~L~Ls~N~l~~~---p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 245 ---GAPSCDWPSQLNSLNLSFTGL---KQVPK----GLP--AKLSVLDLSYNRLDRN---PS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp ---CCSCCCCCTTCCEEECTTSCC---SSCCS----SCC--SEEEEEECCSSCCCSC---CC-TTTSCEEEEEECTTCTT
T ss_pred ---chhhhhhcCCCCEEECCCCcc---Chhhh----hcc--CCceEEECCCCCCCCC---hh-HhhCCCCCEEeccCCCC
Confidence 001123456788888887766 32211 222 6788888887754322 22 66788888888887764
No 63
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.00 E-value=4e-11 Score=116.92 Aligned_cols=150 Identities=13% Similarity=0.075 Sum_probs=93.4
Q ss_pred CCceEEEEEcCCCccccCCc--ccccCCcccEEEecccccc-cCCCcccCcccceeeeeeEEEccchHHHHhccCCc-cc
Q 017981 116 RNVREIEISLNDDECIELPH--CIYTCKTLEVLKLDMNFFI-KTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPA-LE 191 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~-Le 191 (363)
.++++|++..+... .+|. .+..+++|++|++++|.+. ..|.+..+++|++|+|.++.+.. +..-+..+++ |+
T Consensus 305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~~L~ 380 (636)
T 4eco_A 305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE--IPANFCGFTEQVE 380 (636)
T ss_dssp GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEE--CCTTSEEECTTCC
T ss_pred CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCcccc--ccHhhhhhcccCc
Confidence 68999998877653 7887 7888999999999999887 44666678899999999988762 3333677888 99
Q ss_pred eEEEeeeEeCCCceeEEEe-cCCcceEEEEecCCccccCCce----EEEEeccCcceEEEeecCCCcee---eecCCCce
Q 017981 192 DLSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKY----KVIIRAPNLEQLYIRDHGPGLYV---VHELHSLT 263 (363)
Q Consensus 192 ~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~----~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~ 263 (363)
+|.+.+|....+...+... .++|+.|++.+|.......... .-....++|++|.++++....+. +..+++|+
T Consensus 381 ~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp EEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred EEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence 9999888755441111111 1367778877776543100000 00013446666666665443221 23345555
Q ss_pred EEEEee
Q 017981 264 KAVVDY 269 (363)
Q Consensus 264 ~~~l~~ 269 (363)
.+.+..
T Consensus 461 ~L~Ls~ 466 (636)
T 4eco_A 461 SINLMG 466 (636)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 555543
No 64
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.99 E-value=9e-11 Score=103.12 Aligned_cols=165 Identities=16% Similarity=0.159 Sum_probs=78.3
Q ss_pred CCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEE
Q 017981 140 CKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRL 219 (363)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l 219 (363)
+++|++|++++|.+...++...+++|++|+|.++.+++-. . +..+++|++|.+.+|...+. .. -...++|+.|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDL-SS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCG-GG-GTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCC-hh-hccCCCCCEEEC
Confidence 4445555555554443344444555555555555443321 1 44455555555555443332 11 001244555555
Q ss_pred EecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcce
Q 017981 220 ELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIK 298 (363)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 298 (363)
.+|..... .....+++|++|+++++..... .+..+++|+.+.+..+.-.. ... +..+++|+
T Consensus 120 ~~n~i~~~-----~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~------------~~~-l~~l~~L~ 181 (291)
T 1h6t_A 120 EHNGISDI-----NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD------------IVP-LAGLTKLQ 181 (291)
T ss_dssp TTSCCCCC-----GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC------------CGG-GTTCTTCC
T ss_pred CCCcCCCC-----hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc------------chh-hcCCCccC
Confidence 54443221 0012357788888887755432 24456666666655432210 011 55566666
Q ss_pred EEEEeCCccccccccccccCCCCCCCCCcceEEEEec
Q 017981 299 SLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGV 335 (363)
Q Consensus 299 ~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~ 335 (363)
.|.++++.+ ..+. .+..+++|+.|++.++
T Consensus 182 ~L~L~~N~i---~~l~-----~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 182 NLYLSKNHI---SDLR-----ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp EEECCSSCC---CBCG-----GGTTCTTCSEEEEEEE
T ss_pred EEECCCCcC---CCCh-----hhccCCCCCEEECcCC
Confidence 666666655 3221 2334555666666654
No 65
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=5.2e-11 Score=119.09 Aligned_cols=224 Identities=9% Similarity=-0.039 Sum_probs=140.8
Q ss_pred CCceEEEEEcCCCccc----------------cCCcccc--cCCcccEEEecccccccC-C-CcccCcccceeeeeeEE-
Q 017981 116 RNVREIEISLNDDECI----------------ELPHCIY--TCKTLEVLKLDMNFFIKT-P-PTIFFPSAKILHVILNT- 174 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~~~~~-~-~~~~~~~L~~L~L~~~~- 174 (363)
.+++.|+++.+..... .+|..+. ++++|++|+|++|.+... | .+..+++|+.|+|.++.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 5899999987765321 2888877 899999999999976643 3 35689999999999997
Q ss_pred Ecc-c---hHHHH---hccCCccceEEEeeeEeCCCcee-EEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEE
Q 017981 175 IDN-N---FSDWL---FSKCPALEDLSIKGYIYGTDSVT-LNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLY 245 (363)
Q Consensus 175 ~~~-~---~l~~l---l~~cp~Le~L~L~~c~~~~~~~~-l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~ 245 (363)
+++ . .+..+ +..+|+|++|.|.+|.+..+ .. -.+ ..++|+.|++.+|..... . ....+++|+.|.
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i-p~~~~l~~L~~L~~L~Ls~N~l~~l----p-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF-PASASLQKMVKLGLLDCVHNKVRHL----E-AFGTNVKLTDLK 601 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC-CCHHHHTTCTTCCEEECTTSCCCBC----C-CCCTTSEESEEE
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCCcc-CChhhhhcCCCCCEEECCCCCcccc----h-hhcCCCcceEEE
Confidence 665 2 33332 35678999999999876543 21 012 247899999998876421 1 224568899999
Q ss_pred EeecCCCcee--eecCCC-ceEEEEeeeeceeccCCCchhhHHHHHHHhhccC--cceEEEEeCCcccccccccc-ccCC
Q 017981 246 IRDHGPGLYV--VHELHS-LTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIK--NIKSLSLSSGTMFALDRLDY-ANDH 319 (363)
Q Consensus 246 l~~~~~~~~~--~~~~~~-L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~l~~L~l~~~~~~~~~~l~~-~~~~ 319 (363)
++++....+. +..+++ |+.+.+..+.-.. +...+...+ +|+.|.++.+.+ ..... ...
T Consensus 602 Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~------------lp~~~~~~~~~~L~~L~Ls~N~l---~g~ip~l~~- 665 (876)
T 4ecn_A 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY------------IPNIFNAKSVYVMGSVDFSYNKI---GSEGRNISC- 665 (876)
T ss_dssp CCSSCCSCCCTTSCEECTTCCEEECCSSCCCS------------CCSCCCTTCSSCEEEEECCSSCT---TTTSSSCSS-
T ss_pred CcCCccccchHHHhhccccCCEEECcCCCCCc------------CchhhhccccCCCCEEECcCCcC---CCccccchh-
Confidence 9987665332 556677 8888776554211 112223333 488888877765 22111 000
Q ss_pred CCC--CCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981 320 SFP--TFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 320 ~~~--~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
... ...+|+.|+++.+.-.. .-..++..+++|+.|+++.+++
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp CTTTCCCCCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSCCC
T ss_pred hhccccCCCcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCCcC
Confidence 111 22367777777665421 1223455677777777776653
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.99 E-value=3.8e-11 Score=104.65 Aligned_cols=132 Identities=17% Similarity=0.090 Sum_probs=82.7
Q ss_pred CCceEEEEEcCCCccccCCc-ccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981 116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (363)
.+++.|+++.+.. ..++. .+..+++|++|+|++|.+...+ .+..+++|++|+|.++.+..-. ...+.++++|++
T Consensus 28 ~~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCE
T ss_pred CCccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccccE
Confidence 4677777765543 23333 5566888888888888776432 3557888888888888765432 233567888888
Q ss_pred EEEeeeEeCCCceeEEEe-cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCc
Q 017981 193 LSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL 253 (363)
Q Consensus 193 L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~ 253 (363)
|.+.+|...+. ....+. .++|+.|++.+|..... ........+++|++|+++++....
T Consensus 105 L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~--~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 105 LVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp EECTTSCCCCS-TTCCCTTCTTCCEEECCSSCCCCC--CCCGGGGGCTTCCEEECCSSCCCE
T ss_pred EECCCCCcccc-CchhcccCCCCCEEECcCCcccee--cCchhhccCCCCCEEECCCCCCCc
Confidence 88888775544 222232 37888888888765431 001111345778888888775543
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.99 E-value=3e-12 Score=120.01 Aligned_cols=245 Identities=11% Similarity=0.071 Sum_probs=145.9
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccC------CCcccCcccceeeeeeEEEccchHHHHhccCC-
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT------PPTIFFPSAKILHVILNTIDNNFSDWLFSKCP- 188 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~------~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp- 188 (363)
+.+++|+++.+..........+..+++|++|+|++|.+.+. .....+++|++|+|+++.+.+.++..+...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 35778888766543334344456699999999999987632 12346799999999999988777777777776
Q ss_pred ---ccceEEEeeeEeCCCce--eE--E-EecCCcceEEEEecCCccccCCc-e-EEEEeccCcceEEEeecCCCce----
Q 017981 189 ---ALEDLSIKGYIYGTDSV--TL--N-IPSLTLKRLRLELEAPEEDYITK-Y-KVIIRAPNLEQLYIRDHGPGLY---- 254 (363)
Q Consensus 189 ---~Le~L~L~~c~~~~~~~--~l--~-i~~~~L~~L~l~~~~~~~~~~~~-~-~~~~~~p~L~~L~l~~~~~~~~---- 254 (363)
+|++|++.+|..... . .+ . ...++|++|++.+|......... . .+....++|++|.++++.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~-~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGA-GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGG-GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCceeEEEccCCCCCHH-HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 799999999875431 1 00 1 12478999999888653210000 0 0001124577777766644321
Q ss_pred ---eeecCCCceEEEEeeeeceecc------------------CCC----chhhHHHHHHHhhccCcceEEEEeCCcccc
Q 017981 255 ---VVHELHSLTKAVVDYGIECILD------------------YDS----PEDVAQAVVDMLRDIKNIKSLSLSSGTMFA 309 (363)
Q Consensus 255 ---~~~~~~~L~~~~l~~~~~~~~~------------------~~~----~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~ 309 (363)
.+..+++|+.+++..+.-...+ .+. .......+...+..+++|+.|.++++.+.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 1234566666655543210000 000 011112356667778888888888775511
Q ss_pred ccccccccCCCCCCCCCcceEEEEeccCCChHH---HHHHHHhCCCCcceEEeeecC
Q 017981 310 LDRLDYANDHSFPTFPFLNRLEVEGVGACGWLS---LAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 310 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---l~~ll~~~p~L~~L~l~~~~~ 363 (363)
..+....+.....+++|++|+++.+.- +..+ +...+..+|+|++|+++.+++
T Consensus 242 -~~~~~l~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 242 -VGMAELCPGLLHPSSRLRTLWIWECGI-TAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp -HHHHHHHHHHTSTTCCCCEEECTTSCC-CHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred -HHHHHHHHHHhcCCCCceEEECcCCCC-CHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 111110110122466899999988743 4444 666777899999999987753
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.98 E-value=8.9e-10 Score=106.51 Aligned_cols=131 Identities=16% Similarity=0.071 Sum_probs=75.5
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
.+++.|+++.+... .+|. .+++|++|+|++|.+...+. .+++|++|+|.++.++.- -..+++|+.|.+
T Consensus 61 ~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l-----~~~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHL-----PALPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCC-----CCCCTTCCEEEC
T ss_pred CCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCC-----CCCCCCcCEEEC
Confidence 46677777655432 3444 45677777777776654443 566777777776655432 114566777777
Q ss_pred eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCceEEEEeee
Q 017981 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYG 270 (363)
Q Consensus 196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~ 270 (363)
.+|....+ .. ..++|+.|++.+|..... ....++|+.|.++++....+. ..+++|+.+.+..+
T Consensus 129 ~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-------~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N 191 (622)
T 3g06_A 129 FGNQLTSL-PV---LPPGLQELSVSDNQLASL-------PALPSELCKLWAYNNQLTSLP-MLPSGLQELSVSDN 191 (622)
T ss_dssp CSSCCSCC-CC---CCTTCCEEECCSSCCSCC-------CCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSS
T ss_pred CCCCCCcC-CC---CCCCCCEEECcCCcCCCc-------CCccCCCCEEECCCCCCCCCc-ccCCCCcEEECCCC
Confidence 76654443 11 126777777777654321 112456777777766554433 45567777766544
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.97 E-value=2.1e-10 Score=103.65 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=33.5
Q ss_pred HHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC
Q 017981 287 VVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA 337 (363)
Q Consensus 287 ~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 337 (363)
+...+..+++|+.|+++++.+ ..+... .+..+++|+.|++.+++-
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l---~~i~~~---~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQL---KSVPDG---IFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCC---CCCCTT---TTTTCTTCCEEECCSSCB
T ss_pred hHHHHhcccCCCEEECCCCCC---CccCHH---HHhcCCCCCEEEeeCCCc
Confidence 566788999999999999877 433221 234678899999998764
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.97 E-value=7.5e-11 Score=109.90 Aligned_cols=224 Identities=13% Similarity=0.080 Sum_probs=147.9
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (363)
.+++.|+++.+... .-.+..+.++++|++|+|++|.+...+ .+..+++|++|+|.++.++.-. ...+..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCcee
Confidence 57888888766542 122345667899999999998876532 3557899999999998776431 2346788999999
Q ss_pred EEeeeEeCCCcee-EEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeee
Q 017981 194 SIKGYIYGTDSVT-LNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGI 271 (363)
Q Consensus 194 ~L~~c~~~~~~~~-l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~ 271 (363)
.|.+|.+... .. .....++|+.|++.+|........ .....+++|++|+++++....+ .+..+++|+.+++..+.
T Consensus 142 ~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 142 WLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH 218 (440)
T ss_dssp ECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECT--TTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSC
T ss_pred eCCCCccccc-CHHHhhhCcccCEeCCCCCCCcceeCc--chhhcccccCeecCCCCcCccccccCCCcccCEEECCCCc
Confidence 9998864322 11 011247899999988643221000 0112468899999998866533 35677888888876543
Q ss_pred ceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCC
Q 017981 272 ECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMP 351 (363)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p 351 (363)
-.. .....+.++++|+.|.++.+.+ ..+.. . .+..+++|+.|+++.+.-... ....+..++
T Consensus 219 l~~-----------~~~~~~~~l~~L~~L~L~~n~l---~~~~~--~-~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~ 279 (440)
T 3zyj_A 219 LSA-----------IRPGSFQGLMHLQKLWMIQSQI---QVIER--N-AFDNLQSLVEINLAHNNLTLL--PHDLFTPLH 279 (440)
T ss_dssp CCE-----------ECTTTTTTCTTCCEEECTTCCC---CEECT--T-SSTTCTTCCEEECTTSCCCCC--CTTTTSSCT
T ss_pred cCc-----------cChhhhccCccCCEEECCCCce---eEECh--h-hhcCCCCCCEEECCCCCCCcc--ChhHhcccc
Confidence 211 0133467889999999998876 43322 1 345678899999988754221 123467789
Q ss_pred CCcceEEeeecC
Q 017981 352 KLESIVFEEVRM 363 (363)
Q Consensus 352 ~L~~L~l~~~~~ 363 (363)
+|+.|+++.|.+
T Consensus 280 ~L~~L~L~~Np~ 291 (440)
T 3zyj_A 280 HLERIHLHHNPW 291 (440)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEcCCCCc
Confidence 999999988763
No 71
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.97 E-value=3.1e-11 Score=109.51 Aligned_cols=72 Identities=10% Similarity=0.022 Sum_probs=35.2
Q ss_pred HHHHhhcc-CcceEEEEeCCcccccccccc--ccCCCCCCCCCcceEEEEecc--CCChHHHHHHHHhCC---CCcceEE
Q 017981 287 VVDMLRDI-KNIKSLSLSSGTMFALDRLDY--ANDHSFPTFPFLNRLEVEGVG--ACGWLSLAHIFSRMP---KLESIVF 358 (363)
Q Consensus 287 ~~~~l~~l-~~l~~L~l~~~~~~~~~~l~~--~~~~~~~~~~~L~~L~l~~~~--~~~~~~l~~ll~~~p---~L~~L~l 358 (363)
+...+... ++|+.|+++++.+ ..... ... .+..+++|+.|+++++. ..+..++..+....+ +|+.|++
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l---~~~~~~~l~~-~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL 291 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCL---HGPSLENLKL-LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCC---CCCCHHHHHH-TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred HHHHHhcCCCCceEEECcCCCC---CcHHHHHHHH-HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEec
Confidence 44444443 4777777777655 22111 011 23355567777777664 234444555444433 3444445
Q ss_pred eeec
Q 017981 359 EEVR 362 (363)
Q Consensus 359 ~~~~ 362 (363)
+.++
T Consensus 292 ~~N~ 295 (362)
T 3goz_A 292 NGKE 295 (362)
T ss_dssp TSCB
T ss_pred CCCc
Confidence 4443
No 72
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.97 E-value=3.7e-10 Score=93.14 Aligned_cols=59 Identities=19% Similarity=0.066 Sum_probs=33.2
Q ss_pred cCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEe
Q 017981 139 TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIY 200 (363)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~ 200 (363)
.+++|++|+++++.+...++...+++|++|++.++.+..- . .+..+++|++|.+.+|..
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l 100 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDV 100 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTC
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCcc
Confidence 3556666666666555444555666666666666643222 1 245566666666666543
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.96 E-value=1.9e-11 Score=107.31 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=108.0
Q ss_pred CceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (363)
.++++.+..... ..+|..+. ++++.|+|+++.+... ..+..+++|+.|+|.++.++.-.. ...+++|++|.
T Consensus 11 ~l~~l~~~~~~l--~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~ 83 (290)
T 1p9a_G 11 SHLEVNCDKRNL--TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLD 83 (290)
T ss_dssp TCCEEECTTSCC--SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEE
T ss_pred CccEEECCCCCC--CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEE
Confidence 455555543332 24444332 5777888887776543 234567778888888776654311 15677888888
Q ss_pred EeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeeee
Q 017981 195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGI 271 (363)
Q Consensus 195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~ 271 (363)
+.+|.+..+ .......++|+.|.+.+|........ ....+++|++|.++++...... +..+++|+.+.+..+.
T Consensus 84 Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 84 LSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLG---ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp CCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSS---TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHH---HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 887765444 21111236777888877765432111 1123567788877776554332 3456677777665433
Q ss_pred ceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEecc
Q 017981 272 ECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG 336 (363)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 336 (363)
-.. . ....+..+++|+.|.++++.+ ..+.. .+....+|+.|.+.+++
T Consensus 160 l~~---l--------~~~~~~~l~~L~~L~L~~N~l---~~ip~----~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTE---L--------PAGLLNGLENLDTLLLQENSL---YTIPK----GFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSC---C--------CTTTTTTCTTCCEEECCSSCC---CCCCT----TTTTTCCCSEEECCSCC
T ss_pred CCc---c--------CHHHhcCcCCCCEEECCCCcC---CccCh----hhcccccCCeEEeCCCC
Confidence 210 0 123355677788888877766 43322 22234467777777654
No 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.95 E-value=2.1e-10 Score=115.52 Aligned_cols=105 Identities=18% Similarity=0.076 Sum_probs=48.0
Q ss_pred CceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (363)
+++.|+++.+... ...+..+..+++|+.|+|++|.+... ..+..+++|++|+|.++.+... ....+.++++|++|.
T Consensus 267 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 267 SVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGLPKVAYID 344 (844)
T ss_dssp CCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CSCSCSSCTTCCEEE
T ss_pred CccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CHHHhcCCCCCCEEE
Confidence 4555555433321 11233334456666666666555432 1234555666666666554322 012244555566665
Q ss_pred EeeeEeCCCceeEE-EecCCcceEEEEecCC
Q 017981 195 IKGYIYGTDSVTLN-IPSLTLKRLRLELEAP 224 (363)
Q Consensus 195 L~~c~~~~~~~~l~-i~~~~L~~L~l~~~~~ 224 (363)
+.+|..... ..-. ...++|+.|++.+|..
T Consensus 345 L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 345 LQKNHIAII-QDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp CCSCCCCCC-CSSCSCSCCCCCEEEEETCCS
T ss_pred CCCCCCCcc-ChhhhcCCCCCCEEECCCCCC
Confidence 555543332 1111 1135555555555543
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.95 E-value=5e-11 Score=105.73 Aligned_cols=229 Identities=13% Similarity=0.052 Sum_probs=109.4
Q ss_pred cceEEEEecCCCChhhHHHHHHHHHhCCceEEEEEcCCCccccCCccc--ccCCcccEEEecccccccCC------Cccc
Q 017981 90 INKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCI--YTCKTLEVLKLDMNFFIKTP------PTIF 161 (363)
Q Consensus 90 l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~------~~~~ 161 (363)
++++.+... ......+..........++++|+++.+.. ....|..+ ..+++|++|+|++|.+.... ....
T Consensus 66 l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 66 VRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred eeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 444444422 22233344444444445677777765543 12333333 45666677777666655321 1124
Q ss_pred CcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCC---ceeEE-EecCCcceEEEEecCCccccCCceEEEEe
Q 017981 162 FPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTD---SVTLN-IPSLTLKRLRLELEAPEEDYITKYKVIIR 237 (363)
Q Consensus 162 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~---~~~l~-i~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 237 (363)
+++|++|+|.++.+... ....+..+++|++|+|.+|...+. ..... ...++|+.|.+.+|...........+...
T Consensus 144 ~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 56666666666655332 122344566666666666542110 00000 01245555555555432110000000112
Q ss_pred ccCcceEEEeecCCCceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcccccccccccc
Q 017981 238 APNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYAN 317 (363)
Q Consensus 238 ~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~ 317 (363)
+++|++|+++++.........+ ..+..+++|+.|.++.+.+ ..+..
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~-----------------------------~~~~~~~~L~~L~Ls~N~l---~~lp~-- 268 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSA-----------------------------PRCMWSSALNSLNLSFAGL---EQVPK-- 268 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCC-----------------------------SSCCCCTTCCCEECCSSCC---CSCCS--
T ss_pred CCCCCEEECCCCCCCccchhhH-----------------------------HhccCcCcCCEEECCCCCC---Cchhh--
Confidence 3555555555543321110000 0011235788888887766 42211
Q ss_pred CCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981 318 DHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 318 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
.+ +++|+.|+++.+.-... . .+..+|+|+.|+++.|++
T Consensus 269 --~~--~~~L~~L~Ls~N~l~~~---~-~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 269 --GL--PAKLRVLDLSSNRLNRA---P-QPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp --CC--CSCCSCEECCSCCCCSC---C-CTTSCCCCSCEECSSTTT
T ss_pred --hh--cCCCCEEECCCCcCCCC---c-hhhhCCCccEEECcCCCC
Confidence 22 26788888888754322 1 246778899888888764
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.94 E-value=1.9e-11 Score=110.91 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=67.6
Q ss_pred CcceEEEeecCCCcee-------eecCC-CceEEEEeeeeceeccCCCchhhHHHHHHHhhccC-cceEEEEeCCccccc
Q 017981 240 NLEQLYIRDHGPGLYV-------VHELH-SLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIK-NIKSLSLSSGTMFAL 310 (363)
Q Consensus 240 ~L~~L~l~~~~~~~~~-------~~~~~-~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~l~~~~~~~~ 310 (363)
+|++|+++++...... +...+ +|+.+.+..+.- .......+...+..++ +|+.|+++++.+.+.
T Consensus 139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-------~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-------ASKNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-------GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC-------chhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 5666666655433111 12333 666666554432 1222334677788884 999999999876210
Q ss_pred c--ccccccCCCCCC-CCCcceEEEEeccC--CChHHHHHHHHhCCCCcceEEeeec
Q 017981 311 D--RLDYANDHSFPT-FPFLNRLEVEGVGA--CGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 311 ~--~l~~~~~~~~~~-~~~L~~L~l~~~~~--~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
. .+... +.. .++|++|+++++.- .....+..+++.+++|+.|+++.++
T Consensus 212 ~~~~l~~~----l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 212 SYAELAYI----FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CHHHHHHH----HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHH----HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 0 01111 112 24799999999864 2335667778899999999998775
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.92 E-value=2.7e-10 Score=98.93 Aligned_cols=175 Identities=15% Similarity=0.106 Sum_probs=85.8
Q ss_pred CcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEE
Q 017981 141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLR 218 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~ 218 (363)
++|++|+|+++.+...+ .+..+++|++|+|.++.++.-. ..++..+++|++|.+.+|.............++|+.|.
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC-TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC-hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 34555555555554332 2335555555555555443211 12234555556655555543322000001124555555
Q ss_pred EEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccC
Q 017981 219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIK 295 (363)
Q Consensus 219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 295 (363)
+.++........ ....+++|++|.++++...... +..+++|+.+.+..+.-.. . ....+..++
T Consensus 116 l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~--------~~~~~~~l~ 181 (270)
T 2o6q_A 116 LDRNQLKSLPPR---VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR---V--------PEGAFDKLT 181 (270)
T ss_dssp CCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC---C--------CTTTTTTCT
T ss_pred CCCCccCeeCHH---HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE---e--------ChhHhccCC
Confidence 555543221000 0123466666666665443322 3456666666664332110 0 112355678
Q ss_pred cceEEEEeCCccccccccccccCCCCCCCCCcceEEEEecc
Q 017981 296 NIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG 336 (363)
Q Consensus 296 ~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 336 (363)
+|+.|+++++.+ ..+.. . .+..+++|+.|++.+++
T Consensus 182 ~L~~L~L~~N~l---~~~~~--~-~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 182 ELKTLKLDNNQL---KRVPE--G-AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCCEEECCSSCC---SCCCT--T-TTTTCTTCCEEECCSSC
T ss_pred CcCEEECCCCcC---CcCCH--H-HhccccCCCEEEecCCC
Confidence 888888888766 33221 1 24456778888888765
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.91 E-value=9.1e-11 Score=101.92 Aligned_cols=199 Identities=15% Similarity=0.111 Sum_probs=136.5
Q ss_pred CcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEE
Q 017981 141 KTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLE 220 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~ 220 (363)
.+.+.++++++.+...|.. -.++|++|+|.++.+..-. ...+.++++|++|.+.+|.............++|+.|++.
T Consensus 16 ~~~~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCC-CCCCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3578899998888754432 2368999999999876432 2346789999999999987554411111235899999999
Q ss_pred ecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcc
Q 017981 221 LEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNI 297 (363)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 297 (363)
+|........ ....+++|++|.++++...... +..+++|+.+.+..+.-.. . ....+..+++|
T Consensus 94 ~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~--------~~~~~~~l~~L 159 (270)
T 2o6q_A 94 DNKLQALPIG---VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS---L--------PKGVFDKLTSL 159 (270)
T ss_dssp SSCCCCCCTT---TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---C--------CTTTTTTCTTC
T ss_pred CCcCCcCCHh---HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc---c--------CHhHccCCccc
Confidence 9876532111 1134689999999998665443 5678999999887553211 0 12336778999
Q ss_pred eEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981 298 KSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 298 ~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
+.|.++++.+ ..+.. . .+..+++|+.|+++.+.-... ....+..+++|+.|+++.|.+
T Consensus 160 ~~L~L~~n~l---~~~~~--~-~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 160 KELRLYNNQL---KRVPE--G-AFDKLTELKTLKLDNNQLKRV--PEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CEEECCSSCC---SCCCT--T-TTTTCTTCCEEECCSSCCSCC--CTTTTTTCTTCCEEECCSSCB
T ss_pred ceeEecCCcC---cEeCh--h-HhccCCCcCEEECCCCcCCcC--CHHHhccccCCCEEEecCCCe
Confidence 9999999876 43322 1 345678899999998754221 123457899999999988763
No 79
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.90 E-value=2.5e-10 Score=106.75 Aligned_cols=206 Identities=18% Similarity=0.188 Sum_probs=141.6
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (363)
.+++.|+++.+... ...+..+.++++|++|+|++|.+...+. +..+++|++|+|.++.+..-. ...+..+++|++|
T Consensus 99 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L 176 (452)
T 3zyi_A 99 HHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP-SYAFNRVPSLMRL 176 (452)
T ss_dssp TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC-HhHHhcCCcccEE
Confidence 58999999876642 2233556679999999999998876533 557999999999999876431 2347789999999
Q ss_pred EEeeeEeCCCceeEEE----ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEE
Q 017981 194 SIKGYIYGTDSVTLNI----PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAV 266 (363)
Q Consensus 194 ~L~~c~~~~~~~~l~i----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~ 266 (363)
.+.+|.. . ..+.. ..++|+.|++.+|..... . -...+++|++|+++++..... .+.++++|+.+.
T Consensus 177 ~l~~~~~--l-~~i~~~~~~~l~~L~~L~L~~n~l~~~----~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 177 DLGELKK--L-EYISEGAFEGLFNLKYLNLGMCNIKDM----P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248 (452)
T ss_dssp ECCCCTT--C-CEECTTTTTTCTTCCEEECTTSCCSSC----C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred eCCCCCC--c-cccChhhccCCCCCCEEECCCCccccc----c-cccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence 9998641 1 11211 237899999999976532 1 124568999999999877544 366788899888
Q ss_pred EeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC---CChHHH
Q 017981 267 VDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA---CGWLSL 343 (363)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~l 343 (363)
+..+.-... ....+..+++|+.|+++++.+ ..+.. . .+..+++|+.|++.+++- +...++
T Consensus 249 L~~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~l---~~~~~--~-~~~~l~~L~~L~L~~Np~~CdC~~~~l 311 (452)
T 3zyi_A 249 VMNSQVSLI-----------ERNAFDGLASLVELNLAHNNL---SSLPH--D-LFTPLRYLVELHLHHNPWNCDCDILWL 311 (452)
T ss_dssp CTTSCCCEE-----------CTTTTTTCTTCCEEECCSSCC---SCCCT--T-SSTTCTTCCEEECCSSCEECSTTTHHH
T ss_pred eCCCcCceE-----------CHHHhcCCCCCCEEECCCCcC---CccCh--H-HhccccCCCEEEccCCCcCCCCCchHH
Confidence 765432110 123467789999999999876 43222 1 334677899999988752 333444
Q ss_pred HHHHH
Q 017981 344 AHIFS 348 (363)
Q Consensus 344 ~~ll~ 348 (363)
...++
T Consensus 312 ~~~l~ 316 (452)
T 3zyi_A 312 AWWLR 316 (452)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 80
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.90 E-value=7e-11 Score=116.23 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=20.1
Q ss_pred cCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeE
Q 017981 161 FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI 199 (363)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~ 199 (363)
.+++|+.|+|.++.+.+.-....+.++++|++|.+.+|.
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 455666666666554432111224555666666665554
No 81
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.89 E-value=1.6e-10 Score=111.56 Aligned_cols=165 Identities=16% Similarity=0.173 Sum_probs=82.0
Q ss_pred CCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEE-ecCCcceEE
Q 017981 140 CKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLKRLR 218 (363)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~ 218 (363)
+++|+.|.+.+|.+...++...+++|+.|+|+++.+.+-. . +..+++|+.|.|.+|.+.+. . .+ ..++|+.|+
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l-~--~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENKIKDL-S--SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCC-T--TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCCCCCC-h--hhccCCCCCEEE
Confidence 4444555555444443344444555555555555443321 1 44455555555555543332 1 01 124455555
Q ss_pred EEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcc
Q 017981 219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNI 297 (363)
Q Consensus 219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 297 (363)
+.+|..... .-...+|+|+.|.++++..... .+..+++|+.+.+..+.... ... +..+++|
T Consensus 116 Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~------------~~~-l~~l~~L 177 (605)
T 1m9s_A 116 LEHNGISDI-----NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD------------IVP-LAGLTKL 177 (605)
T ss_dssp CTTSCCCCC-----GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCC------------CGG-GTTCTTC
T ss_pred ecCCCCCCC-----ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCC------------chh-hccCCCC
Confidence 555443221 0012457888888887755433 24566777777665443211 011 5666777
Q ss_pred eEEEEeCCccccccccccccCCCCCCCCCcceEEEEecc
Q 017981 298 KSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG 336 (363)
Q Consensus 298 ~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 336 (363)
+.|.|+.+.+ ..+. .+..+++|+.|++..+.
T Consensus 178 ~~L~Ls~N~i---~~l~-----~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 178 QNLYLSKNHI---SDLR-----ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CEEECCSSCC---CBCG-----GGTTCTTCSEEECCSEE
T ss_pred CEEECcCCCC---CCCh-----HHccCCCCCEEEccCCc
Confidence 7777777655 3221 23345667777766653
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.88 E-value=1.5e-09 Score=105.02 Aligned_cols=217 Identities=16% Similarity=0.075 Sum_probs=129.9
Q ss_pred CCcceEEEEecCCCChhhHHHHHHHHHhCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccce
Q 017981 88 GNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKI 167 (363)
Q Consensus 88 ~~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~ 167 (363)
..++.+.+....-.. +.. ..++++.|+++.+... .+|. .+++|++|+|++|.+...+. .+++|++
T Consensus 61 ~~L~~L~L~~N~l~~---lp~-----~l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~ 125 (622)
T 3g06_A 61 AHITTLVIPDNNLTS---LPA-----LPPELRTLEVSGNQLT--SLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCK 125 (622)
T ss_dssp TTCSEEEECSCCCSC---CCC-----CCTTCCEEEECSCCCS--CCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCE
T ss_pred CCCcEEEecCCCCCC---CCC-----cCCCCCEEEcCCCcCC--cCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCE
Confidence 356777776543111 111 1368999999877642 4555 67899999999998886554 6788999
Q ss_pred eeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEe
Q 017981 168 LHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIR 247 (363)
Q Consensus 168 L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 247 (363)
|+|.++.++.- -..+++|++|.+.+|.+.++ .. ..++|+.|.+.+|..... ....++|+.|+++
T Consensus 126 L~L~~N~l~~l-----p~~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l-------~~~~~~L~~L~Ls 189 (622)
T 3g06_A 126 LWIFGNQLTSL-----PVLPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL-------PMLPSGLQELSVS 189 (622)
T ss_dssp EECCSSCCSCC-----CCCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-------CCCCTTCCEEECC
T ss_pred EECCCCCCCcC-----CCCCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCC-------cccCCCCcEEECC
Confidence 99988866542 22358888888888875543 11 224566666665544321 0223555555555
Q ss_pred ecCCCcee-------------------eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccc
Q 017981 248 DHGPGLYV-------------------VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMF 308 (363)
Q Consensus 248 ~~~~~~~~-------------------~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~ 308 (363)
++....+. ...+++|+.+.+..+.- ..+-..+++|+.|.++++.+
T Consensus 190 ~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L---------------~~lp~~l~~L~~L~Ls~N~L- 253 (622)
T 3g06_A 190 DNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL---------------TSLPVLPSELKELMVSGNRL- 253 (622)
T ss_dssp SSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCC---------------SCCCCCCTTCCEEECCSSCC-
T ss_pred CCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCcc---------------CcCCCCCCcCcEEECCCCCC-
Confidence 54332211 01224455554433221 00113456777777777655
Q ss_pred cccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981 309 ALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM 363 (363)
Q Consensus 309 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 363 (363)
..+ .+.+++|+.|+++.+.-. .++.-+.++|+|+.|+++.|++
T Consensus 254 --~~l-------p~~~~~L~~L~Ls~N~L~---~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 254 --TSL-------PMLPSGLLSLSVYRNQLT---RLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp --SCC-------CCCCTTCCEEECCSSCCC---SCCGGGGGSCTTCEEECCSCCC
T ss_pred --CcC-------CcccccCcEEeCCCCCCC---cCCHHHhhccccCEEEecCCCC
Confidence 321 114568999999887542 3444578899999999998864
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.87 E-value=1.5e-10 Score=100.60 Aligned_cols=124 Identities=15% Similarity=0.084 Sum_probs=58.7
Q ss_pred CCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeE-EEecCCcceEE
Q 017981 140 CKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL-NIPSLTLKRLR 218 (363)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l-~i~~~~L~~L~ 218 (363)
+++|++|.+.++.+...++...+++|++|+|.++.+.+- . -+..+++|++|.+.+|.+.+. ..- -...++|+.|+
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEE
Confidence 455566666655555444455556666666665554432 1 244556666666665543332 110 01125566666
Q ss_pred EEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeee
Q 017981 219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYG 270 (363)
Q Consensus 219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~ 270 (363)
+.+|........ ....+++|++|.++++...... +..+++|+.+.+..+
T Consensus 116 L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 116 LVENQLQSLPDG---VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp CTTSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcCCccCHH---HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC
Confidence 655543321000 0122455666666555443222 344555555555433
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.86 E-value=1.3e-10 Score=103.06 Aligned_cols=209 Identities=15% Similarity=0.046 Sum_probs=133.4
Q ss_pred cCCcccccCCcccEEEecccccccC--CCcc--------cCcccceeeeeeEEEccchHHHH-hccCCccceEEEeeeEe
Q 017981 132 ELPHCIYTCKTLEVLKLDMNFFIKT--PPTI--------FFPSAKILHVILNTIDNNFSDWL-FSKCPALEDLSIKGYIY 200 (363)
Q Consensus 132 ~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~--------~~~~L~~L~L~~~~~~~~~l~~l-l~~cp~Le~L~L~~c~~ 200 (363)
.+|..+... |++|+|+++.+... +... .+++|++|+|.++.+++..-..+ +..+++|++|.|.+|..
T Consensus 56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133 (312)
T ss_dssp CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence 335434333 88888888777432 2222 58899999999998876422222 37889999999999886
Q ss_pred CCCceeEEEe----cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-------eeecCCCceEEEEee
Q 017981 201 GTDSVTLNIP----SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-------VVHELHSLTKAVVDY 269 (363)
Q Consensus 201 ~~~~~~l~i~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-------~~~~~~~L~~~~l~~ 269 (363)
.+....+.-- .++|+.|++.+|........ ....+++|++|+++++...+. .+..+++|+.+++..
T Consensus 134 ~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~ 210 (312)
T 1wwl_A 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE---QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210 (312)
T ss_dssp SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT---TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT
T ss_pred cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH---HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC
Confidence 5531111100 27899999999976543111 123578999999998864321 237788999888865
Q ss_pred eeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHh
Q 017981 270 GIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSR 349 (363)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~ 349 (363)
+.- ...+.....++..+++|+.|+++.+.+ ..... .. .+..+++|+.|+++.+.-.. ++.-+.
T Consensus 211 N~l--------~~~~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~-~~-~~~~l~~L~~L~Ls~N~l~~---ip~~~~- 273 (312)
T 1wwl_A 211 AGM--------ETPSGVCSALAAARVQLQGLDLSHNSL---RDAAG-AP-SCDWPSQLNSLNLSFTGLKQ---VPKGLP- 273 (312)
T ss_dssp SCC--------CCHHHHHHHHHHTTCCCSEEECTTSCC---CSSCC-CS-CCCCCTTCCEEECTTSCCSS---CCSSCC-
T ss_pred CcC--------cchHHHHHHHHhcCCCCCEEECCCCcC---Ccccc-hh-hhhhcCCCCEEECCCCccCh---hhhhcc-
Confidence 432 112233456677889999999999876 33221 01 22345789999998875421 111111
Q ss_pred CCCCcceEEeeecC
Q 017981 350 MPKLESIVFEEVRM 363 (363)
Q Consensus 350 ~p~L~~L~l~~~~~ 363 (363)
++|+.|+++.|++
T Consensus 274 -~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 274 -AKLSVLDLSYNRL 286 (312)
T ss_dssp -SEEEEEECCSSCC
T ss_pred -CCceEEECCCCCC
Confidence 7899999988764
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.85 E-value=3e-09 Score=101.18 Aligned_cols=213 Identities=16% Similarity=0.136 Sum_probs=101.0
Q ss_pred CcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEE
Q 017981 141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLR 218 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~ 218 (363)
++|++|+|++|.+...+ .+..+++|++|+|+++.+++-. ...+.++++|++|+|.+|....+ ... ..++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~l-p~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD-ISVFKFNQELEYLDLSHNKLVKI-SCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEE-GGGGTTCTTCCEEECCSSCCCEE-ECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcC-hHHhhcccCCCEEecCCCceeec-Ccc--ccCCccEEe
Confidence 56666666666655432 2345666666666666554321 22345566666666666654332 111 346666666
Q ss_pred EEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCc--eEEEEeeeeceeccCCCchhh-------------
Q 017981 219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSL--TKAVVDYGIECILDYDSPEDV------------- 283 (363)
Q Consensus 219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L--~~~~l~~~~~~~~~~~~~~~~------------- 283 (363)
+.+|..... ........+++|++|+++++......+..+++| +.+.+..+.....+ ..+..+
T Consensus 97 L~~N~l~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~-~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 97 LSFNAFDAL--PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEK-EDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CCSSCCSSC--CCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSS-CCTTTTTTCCEEEEEEECC
T ss_pred ccCCccccc--cchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccc-cccccccccccceEEEEec
Confidence 666654321 000111234566666666665544444555555 55555443210000 000000
Q ss_pred ----HH-HHHHHhhccCcceEEEEeCCccc-cccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHH--hCCCCcc
Q 017981 284 ----AQ-AVVDMLRDIKNIKSLSLSSGTMF-ALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFS--RMPKLES 355 (363)
Q Consensus 284 ----~~-~~~~~l~~l~~l~~L~l~~~~~~-~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~--~~p~L~~ 355 (363)
.. .....+..+++++.|.++.+... ....+....+ .+..+++|+.|++..+.. ....+..+.. .+++|+.
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l-~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET-TWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE-EHHHHHHHHHHHHTSSCSE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc-CHHHHHHHHHHhhhCcccE
Confidence 00 00112334666777777665300 0011111111 233556677777776643 3333333332 3568888
Q ss_pred eEEeeec
Q 017981 356 IVFEEVR 362 (363)
Q Consensus 356 L~l~~~~ 362 (363)
|+++.++
T Consensus 252 L~l~~n~ 258 (520)
T 2z7x_B 252 FSISNVK 258 (520)
T ss_dssp EEEEEEE
T ss_pred EEeeccc
Confidence 8888765
No 86
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.85 E-value=2.5e-10 Score=112.29 Aligned_cols=206 Identities=15% Similarity=0.068 Sum_probs=139.4
Q ss_pred CcccccCCcccEEEecccccccC---CCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeE---
Q 017981 134 PHCIYTCKTLEVLKLDMNFFIKT---PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL--- 207 (363)
Q Consensus 134 ~~~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l--- 207 (363)
|..+..+++|++|+|++|.+... ..+.++++|+.|+|.++.+.+-. ...+..+|+|++|.+.+|...+. ..+
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~-~~~p~~ 475 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT-RNSFALVPSLQRLMLRRVALKNV-DSSPSP 475 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC-TTTTTTCTTCCEEECTTSCCBCT-TCSSCT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC-hhhhhcCcccccchhcccccccc-ccCCcc
Confidence 44556789999999999987632 24568999999999999876542 23366899999999999875322 111
Q ss_pred EEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-----------eeecCCCceEEEEeeeeceecc
Q 017981 208 NIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-----------VVHELHSLTKAVVDYGIECILD 276 (363)
Q Consensus 208 ~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-----------~~~~~~~L~~~~l~~~~~~~~~ 276 (363)
....++|+.|++.+|........ ....+++|++|+++++..... .+.++++|+.+++..+.-..
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~i~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-- 550 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNNIANINDD---MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-- 550 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC--
T ss_pred cccCCCCCEEECCCCCCCcCChh---hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC--
Confidence 11247899999999876432111 113568999999998765432 25678899998887553211
Q ss_pred CCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHH-hCCCCcc
Q 017981 277 YDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFS-RMPKLES 355 (363)
Q Consensus 277 ~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~-~~p~L~~ 355 (363)
. ....+.++++|+.|+++.+.+ ..+.. . .+..+++|+.|++..+.-... ....+. .+++|+.
T Consensus 551 -i--------~~~~~~~l~~L~~L~Ls~N~l---~~l~~--~-~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~~~L~~ 613 (680)
T 1ziw_A 551 -I--------PVEVFKDLFELKIIDLGLNNL---NTLPA--S-VFNNQVSLKSLNLQKNLITSV--EKKVFGPAFRNLTE 613 (680)
T ss_dssp -C--------CTTTTTTCTTCCEEECCSSCC---CCCCT--T-TTTTCTTCCEEECTTSCCCBC--CHHHHHHHHTTCSE
T ss_pred -C--------CHHHcccccCcceeECCCCCC---CcCCH--h-HhCCCCCCCEEECCCCcCCcc--ChhHhcccccccCE
Confidence 0 123467889999999998877 43322 1 234667899999988753221 112233 6789999
Q ss_pred eEEeeecC
Q 017981 356 IVFEEVRM 363 (363)
Q Consensus 356 L~l~~~~~ 363 (363)
|+++.|++
T Consensus 614 l~l~~N~~ 621 (680)
T 1ziw_A 614 LDMRFNPF 621 (680)
T ss_dssp EECTTCCC
T ss_pred EEccCCCc
Confidence 99988764
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.84 E-value=4.5e-10 Score=92.67 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=74.0
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
.+++++++..+... .+| .+..+++|++|++++|.+...+....+++|++|++.++.+++... ..+..+++|++|.+
T Consensus 44 ~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGS-CCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccC-hhhcCCCCCCEEEe
Confidence 46777777765542 444 456677788888877766544555677778888887776665322 12556777888877
Q ss_pred eeeEeCCCceeEEE-ecCCcceEEEEecC-CccccCCceEEEEeccCcceEEEeecCC
Q 017981 196 KGYIYGTDSVTLNI-PSLTLKRLRLELEA-PEEDYITKYKVIIRAPNLEQLYIRDHGP 251 (363)
Q Consensus 196 ~~c~~~~~~~~l~i-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 251 (363)
.+|...+. ..-.+ ..++|+.|++.+|. .... . ....+|+|++|.++++..
T Consensus 120 s~n~i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~----~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 120 SHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDI----M-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp CSSBCBGG-GHHHHTTCSSCCEEECCSCTBCCCC----G-GGGGCSSCCEEECTTBCC
T ss_pred cCCccCcH-hHHHHhhCCCCCEEEccCCCCcccc----H-hhcCCCCCCEEECCCCCC
Confidence 77764431 01111 23667777777665 3221 0 113346666666666543
No 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.80 E-value=8.7e-10 Score=105.98 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=48.2
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC---CcccCcccceeeeeeEEEccchHHHHhccCCcc--
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP---PTIFFPSAKILHVILNTIDNNFSDWLFSKCPAL-- 190 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L-- 190 (363)
.+++.|+++.+... .+|.. .+++|++|+|++|.+...+ .+..+++|++|+|.++.+...++ ..+++|
T Consensus 100 ~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L 171 (562)
T 3a79_B 100 QDLEYLDVSHNRLQ--NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL----LPVAHLHL 171 (562)
T ss_dssp TTCCEEECTTSCCC--EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT----GGGTTSCE
T ss_pred CCCCEEECCCCcCC--ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch----hhhhhcee
Confidence 46777777665542 45544 6777888888877766432 34567777778777776655432 233444
Q ss_pred ceEEEeeeEe
Q 017981 191 EDLSIKGYIY 200 (363)
Q Consensus 191 e~L~L~~c~~ 200 (363)
++|.+.+|..
T Consensus 172 ~~L~L~~n~l 181 (562)
T 3a79_B 172 SCILLDLVSY 181 (562)
T ss_dssp EEEEEEESSC
T ss_pred eEEEeecccc
Confidence 6666666543
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.79 E-value=4.2e-09 Score=89.51 Aligned_cols=101 Identities=6% Similarity=-0.008 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCccccCCc-ccccCCcccEEEecccc-cccCC--CcccCcccceeeeee-EEEccchHHHHhccCCccc
Q 017981 117 NVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNF-FIKTP--PTIFFPSAKILHVIL-NTIDNNFSDWLFSKCPALE 191 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le 191 (363)
+++.|++..+.. ..++. .+..+++|++|++++|. +...+ .+..+++|++|+|.+ +.++.-. ...+.++++|+
T Consensus 32 ~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCC
T ss_pred cccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCC
Confidence 566666665543 23333 34456667777776664 43322 334666667776666 4333211 12245566677
Q ss_pred eEEEeeeEeCCCceeEEEecCCcc---eEEEEec
Q 017981 192 DLSIKGYIYGTDSVTLNIPSLTLK---RLRLELE 222 (363)
Q Consensus 192 ~L~L~~c~~~~~~~~l~i~~~~L~---~L~l~~~ 222 (363)
+|.+.+|...+. .. ....++|+ .|++.+|
T Consensus 109 ~L~l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 109 FLGIFNTGLKMF-PD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEEEEECCCSC-CC-CTTCCBCCSEEEEEEESC
T ss_pred EEeCCCCCCccc-cc-cccccccccccEEECCCC
Confidence 777666654443 22 11124444 6666655
No 90
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.77 E-value=5.3e-10 Score=89.67 Aligned_cols=134 Identities=22% Similarity=0.088 Sum_probs=92.4
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
+++++|++..+......+|..+..+++|++|+|++|.+.....+..+++|++|+|+++.+.+. +...+..+++|++|.+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEec
Confidence 468888887766432467777778999999999999887665566889999999999988664 4455667899999999
Q ss_pred eeeEeCCCcee-EEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981 196 KGYIYGTDSVT-LNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP 251 (363)
Q Consensus 196 ~~c~~~~~~~~-l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 251 (363)
.+|.+.+. .. -.+ ..++|+.|++.+|...............+|+|++|+++++..
T Consensus 103 s~N~l~~~-~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 103 SGNKLKDI-STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp BSSSCCSS-GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred cCCccCcc-hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 99876554 21 111 247788888888765432110001223467788877777644
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.76 E-value=3.1e-09 Score=93.28 Aligned_cols=166 Identities=17% Similarity=0.120 Sum_probs=124.4
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
.+++.|.+..+... .++ .+..+++|++|+|++|.+...+....+++|+.|+|.++.+.+- .. +..+++|++|.+
T Consensus 46 ~~L~~L~l~~~~i~--~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEEC
T ss_pred CcccEEEccCCCcc--cCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEEC
Confidence 57899988766542 333 3677999999999999988665577899999999999987653 22 788999999999
Q ss_pred eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeecee
Q 017981 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECI 274 (363)
Q Consensus 196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~ 274 (363)
.+|...+. ..+ ...++|+.|++.+|..... .....+++|++|+++++..... .+..+++|+.+++..+.-..
T Consensus 120 ~~n~i~~~-~~l-~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 120 EHNGISDI-NGL-VHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp TTSCCCCC-GGG-GGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred CCCcCCCC-hhh-cCCCCCCEEEccCCcCCcc-----hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC
Confidence 99886554 211 1248999999999976532 1124578999999999866533 37788999999887654311
Q ss_pred ccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981 275 LDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM 307 (363)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 307 (363)
+ ..+..+++|+.|.++++.+
T Consensus 193 ------------l-~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 193 ------------L-RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp ------------C-GGGTTCTTCSEEEEEEEEE
T ss_pred ------------C-hhhccCCCCCEEECcCCcc
Confidence 1 1277899999999998765
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.75 E-value=2e-09 Score=91.61 Aligned_cols=192 Identities=12% Similarity=0.041 Sum_probs=123.6
Q ss_pred CcccEEEecccccccCC--CcccCcccceeeeeeEE-EccchHHHHhccCCccceEEEee-eEeCCCceeEEEecCCcce
Q 017981 141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNT-IDNNFSDWLFSKCPALEDLSIKG-YIYGTDSVTLNIPSLTLKR 216 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~-c~~~~~~~~l~i~~~~L~~ 216 (363)
++|++|+++++.+...+ .+..+++|++|+|.++. ++.-. ...+.++++|++|.+.+ +.............++|+.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 48999999999887543 35689999999999986 53321 12367899999999998 5443321112234589999
Q ss_pred EEEEecCCccccCCceEEEEeccCcc---eEEEeec-CCCcee---eecCCCce-EEEEeeeeceeccCCCchhhHHHHH
Q 017981 217 LRLELEAPEEDYITKYKVIIRAPNLE---QLYIRDH-GPGLYV---VHELHSLT-KAVVDYGIECILDYDSPEDVAQAVV 288 (363)
Q Consensus 217 L~l~~~~~~~~~~~~~~~~~~~p~L~---~L~l~~~-~~~~~~---~~~~~~L~-~~~l~~~~~~~~~~~~~~~~~~~~~ 288 (363)
|++.+|..... .. ...+++|+ +|+++++ ....+. +..+++|+ .+.+....-.. . ..
T Consensus 110 L~l~~n~l~~l----p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~---i--------~~ 173 (239)
T 2xwt_C 110 LGIFNTGLKMF----PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS---V--------QG 173 (239)
T ss_dssp EEEEEECCCSC----CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE---E--------CT
T ss_pred EeCCCCCCccc----cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc---c--------CH
Confidence 99999976532 11 23456676 9999988 554433 55677888 87775443211 0 01
Q ss_pred HHhhccCcceEEEEeCCc-cccccccccccCCCCCCC-CCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeee
Q 017981 289 DMLRDIKNIKSLSLSSGT-MFALDRLDYANDHSFPTF-PFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEV 361 (363)
Q Consensus 289 ~~l~~l~~l~~L~l~~~~-~~~~~~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 361 (363)
..+.. ++|+.|+++++. + ..+.. . .+..+ ++|+.|+++.+.-... .. ..+++|+.|.+..+
T Consensus 174 ~~~~~-~~L~~L~L~~n~~l---~~i~~--~-~~~~l~~~L~~L~l~~N~l~~l---~~--~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 174 YAFNG-TKLDAVYLNKNKYL---TVIDK--D-AFGGVYSGPSLLDVSQTSVTAL---PS--KGLEHLKELIARNT 236 (239)
T ss_dssp TTTTT-CEEEEEECTTCTTC---CEECT--T-TTTTCSBCCSEEECTTCCCCCC---CC--TTCTTCSEEECTTC
T ss_pred hhcCC-CCCCEEEcCCCCCc---ccCCH--H-HhhccccCCcEEECCCCccccC---Ch--hHhccCceeeccCc
Confidence 12333 689999998884 5 33322 1 33456 7899999987653221 11 15788888887643
No 93
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.75 E-value=9.2e-10 Score=96.55 Aligned_cols=198 Identities=13% Similarity=0.020 Sum_probs=105.2
Q ss_pred cccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcce
Q 017981 137 IYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR 216 (363)
Q Consensus 137 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~ 216 (363)
+.++++|+++++.++.+...|.. -.++|+.|+|.++.++.-. ...+..+++|++|.|.+|..... ... ...++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCC-CCCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCE
Confidence 34466677777777666644322 2356777777777654331 22355667777777777654332 111 12367777
Q ss_pred EEEEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhc
Q 017981 217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRD 293 (363)
Q Consensus 217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (363)
|++.+|..... .......++|++|.++++...... +..+++|+.+.+..+.-.. . ....+..
T Consensus 82 L~Ls~N~l~~l----~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~---~--------~~~~~~~ 146 (290)
T 1p9a_G 82 LDLSHNQLQSL----PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT---L--------PPGLLTP 146 (290)
T ss_dssp EECCSSCCSSC----CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC---C--------CTTTTTT
T ss_pred EECCCCcCCcC----chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc---c--------Chhhccc
Confidence 77777655321 111134567777777766554332 4556667766665432110 0 1223455
Q ss_pred cCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981 294 IKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 294 l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
+++|+.|.++.+.+ ..+.. . .+..+++|+.|++..+.-. .++.-+...++|+.|.+..|.
T Consensus 147 l~~L~~L~L~~N~l---~~l~~--~-~~~~l~~L~~L~L~~N~l~---~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 147 TPKLEKLSLANNNL---TELPA--G-LLNGLENLDTLLLQENSLY---TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTCCEEECTTSCC---SCCCT--T-TTTTCTTCCEEECCSSCCC---CCCTTTTTTCCCSEEECCSCC
T ss_pred ccCCCEEECCCCcC---CccCH--H-HhcCcCCCCEEECCCCcCC---ccChhhcccccCCeEEeCCCC
Confidence 66777777776655 32221 1 2234566777777665432 122223345567777666654
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.73 E-value=2.4e-09 Score=92.49 Aligned_cols=147 Identities=19% Similarity=0.126 Sum_probs=95.3
Q ss_pred cccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcce
Q 017981 137 IYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR 216 (363)
Q Consensus 137 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~ 216 (363)
+..+++|++|++++|.+...++...+++|+.|+|+++.+.+-. . +..+++|++|.+.+|...+. ..+.. ++|+.
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l-~~~~~--~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNL-NGIPS--ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCC-TTCCC--SSCCE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCc-Ccccc--CcccE
Confidence 4557888888888887776666677888888888888776542 2 67888888888888876554 22211 78888
Q ss_pred EEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccC
Q 017981 217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIK 295 (363)
Q Consensus 217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 295 (363)
|++.+|..... . ....+++|+.|+++++..... .+..+++|+.+.+..+.-.. . ..+..++
T Consensus 111 L~L~~N~l~~~----~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~------------~-~~l~~l~ 172 (263)
T 1xeu_A 111 LFLDNNELRDT----D-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN------------T-GGLTRLK 172 (263)
T ss_dssp EECCSSCCSBS----G-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCB------------C-TTSTTCC
T ss_pred EEccCCccCCC----h-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcc------------h-HHhccCC
Confidence 88888865432 1 123467788888877655432 24456666666554433211 1 3355566
Q ss_pred cceEEEEeCCcc
Q 017981 296 NIKSLSLSSGTM 307 (363)
Q Consensus 296 ~l~~L~l~~~~~ 307 (363)
+|+.|.++++.+
T Consensus 173 ~L~~L~l~~N~~ 184 (263)
T 1xeu_A 173 KVNWIDLTGQKC 184 (263)
T ss_dssp CCCEEEEEEEEE
T ss_pred CCCEEeCCCCcc
Confidence 777777766544
No 95
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.67 E-value=5.2e-10 Score=87.82 Aligned_cols=108 Identities=19% Similarity=0.112 Sum_probs=77.8
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
.++++|++..+......+|..+..+++|++|++++|.+........+++|++|+|+++.+.+. +...+..+++|++|.+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence 468888887665432367777778999999999999887665666889999999999988664 4556677899999999
Q ss_pred eeeEeCCCcee-EEE-ecCCcceEEEEecCCc
Q 017981 196 KGYIYGTDSVT-LNI-PSLTLKRLRLELEAPE 225 (363)
Q Consensus 196 ~~c~~~~~~~~-l~i-~~~~L~~L~l~~~~~~ 225 (363)
.+|.+.+. .. -.+ ..++|+.|++.+|...
T Consensus 96 s~N~i~~~-~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 96 SGNKIKDL-STIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp TTSCCCSH-HHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCcCCCh-HHHHHHhhCCCCCEEeCcCCccc
Confidence 99875543 11 111 2367777777776543
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.66 E-value=3e-09 Score=102.56 Aligned_cols=166 Identities=17% Similarity=0.097 Sum_probs=122.8
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
.+++.|.++.+.. ..++ .+..+++|+.|+|++|.+...+....+++|+.|+|.++.+.+-. -+..+++|++|.|
T Consensus 43 ~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCC--CCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT---TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCC--CCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh---hhccCCCCCEEEe
Confidence 5788887765553 2333 46779999999999998886666778999999999999876532 3678999999999
Q ss_pred eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeecee
Q 017981 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECI 274 (363)
Q Consensus 196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~ 274 (363)
.+|.+.+. .. -...++|+.|.+.+|..... .....+++|+.|.++++..... .+..+++|+.+.+..+....
T Consensus 117 s~N~l~~l-~~-l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 117 EHNGISDI-NG-LVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp TTSCCCCC-GG-GGGCTTCSEEECCSSCCCCC-----GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred cCCCCCCC-cc-ccCCCccCEEECCCCccCCc-----hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC
Confidence 99886554 22 11248999999999876532 1224579999999999876533 37788999999887654311
Q ss_pred ccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981 275 LDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM 307 (363)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 307 (363)
+ ..+..+++|+.|.++++.+
T Consensus 190 ------------l-~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 190 ------------L-RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp ------------C-GGGTTCTTCSEEECCSEEE
T ss_pred ------------C-hHHccCCCCCEEEccCCcC
Confidence 1 2377899999999998765
No 97
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.66 E-value=1.5e-08 Score=94.61 Aligned_cols=79 Identities=15% Similarity=0.064 Sum_probs=36.9
Q ss_pred cccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcce
Q 017981 137 IYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR 216 (363)
Q Consensus 137 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~ 216 (363)
+..+++|++|++++|.+...+. ..++|++|++.++.+.. +.. +..+++|++|.+.+|...+. .. ..++|+.
T Consensus 191 ~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~ 261 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNSLKKLPD--LPLSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLKTL-PD---LPPSLEA 261 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSSC-CS---CCTTCCE
T ss_pred ccCCCCCCEEECCCCcCCcCCC--CcCcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCCcc-cc---cccccCE
Confidence 3344555555555544443221 11345555555554431 111 44566666666666654433 11 1255666
Q ss_pred EEEEecCC
Q 017981 217 LRLELEAP 224 (363)
Q Consensus 217 L~l~~~~~ 224 (363)
|++.+|..
T Consensus 262 L~l~~N~l 269 (454)
T 1jl5_A 262 LNVRDNYL 269 (454)
T ss_dssp EECCSSCC
T ss_pred EECCCCcc
Confidence 66665543
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.66 E-value=5.3e-09 Score=99.95 Aligned_cols=185 Identities=12% Similarity=0.061 Sum_probs=125.6
Q ss_pred hCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981 115 MRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (363)
Q Consensus 115 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (363)
..+++.|++..+... .+|..++ ++|++|+|++|.+...| ..+++|++|+|.++.+++ +.. +. .+|++|.
T Consensus 58 ~~~L~~L~Ls~n~L~--~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L~ 126 (571)
T 3cvr_A 58 INQFSELQLNRLNLS--SLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKHLD 126 (571)
T ss_dssp HTTCSEEECCSSCCS--CCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEE
T ss_pred cCCccEEEeCCCCCC--ccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCEEE
Confidence 458999999876643 4776553 88999999999988656 668999999999998765 333 32 3999999
Q ss_pred EeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCceEEEEeeeecee
Q 017981 195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECI 274 (363)
Q Consensus 195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~ 274 (363)
|.+|.+.++ .. ..++|+.|++.+|..... .. ..++|++|.++++....+.. -.++|+.+++..+.-..
T Consensus 127 Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l----p~---~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 127 VDNNQLTML-PE---LPALLEYINADNNQLTML----PE---LPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTNLLES 194 (571)
T ss_dssp CCSSCCSCC-CC---CCTTCCEEECCSSCCSCC----CC---CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSS
T ss_pred CCCCcCCCC-CC---cCccccEEeCCCCccCcC----CC---cCCCcCEEECCCCCCCCcch-hhCCCCEEECcCCCCCc
Confidence 999987776 33 568999999999986532 11 56899999999987654322 11678888776553211
Q ss_pred ccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC
Q 017981 275 LDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA 337 (363)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 337 (363)
+.. +.. .+....+.++.|+++++.+ ..+.. .+..+++|+.|+++++.-
T Consensus 195 ---lp~--~~~---~L~~~~~~L~~L~Ls~N~l---~~lp~----~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 195 ---LPA--VPV---RNHHSEETEIFFRCRENRI---THIPE----NILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ---CCC--CC-----------CCEEEECCSSCC---CCCCG----GGGGSCTTEEEECCSSSC
T ss_pred ---hhh--HHH---hhhcccccceEEecCCCcc---eecCH----HHhcCCCCCEEEeeCCcC
Confidence 100 111 2223334459999999877 43332 233477899999988764
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.65 E-value=6.2e-10 Score=96.22 Aligned_cols=166 Identities=10% Similarity=0.028 Sum_probs=117.2
Q ss_pred cCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEE
Q 017981 139 TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLR 218 (363)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~ 218 (363)
.+.+++.+.++++.+.+.+....+++|+.|++.++.+.+-. -+..+++|++|.+.+|...+. .. -...++|+.|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEE
Confidence 35667777888877775566678999999999999876532 367899999999999987766 33 11248999999
Q ss_pred EEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcc
Q 017981 219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNI 297 (363)
Q Consensus 219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 297 (363)
+.+|...... . +.. ++|++|.++++..... .+..+++|+.+++..+.-.. + ..+..+++|
T Consensus 92 L~~N~l~~l~-~---~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~------------~-~~l~~l~~L 152 (263)
T 1xeu_A 92 VNRNRLKNLN-G---IPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS------------I-VMLGFLSKL 152 (263)
T ss_dssp CCSSCCSCCT-T---CCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB------------C-GGGGGCTTC
T ss_pred CCCCccCCcC-c---ccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCC------------C-hHHccCCCC
Confidence 9999765431 1 111 8999999999866543 35677888888776443211 1 146778888
Q ss_pred eEEEEeCCccccccccccccCCCCCCCCCcceEEEEecc
Q 017981 298 KSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG 336 (363)
Q Consensus 298 ~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 336 (363)
+.|.++++.+ ..+ . .+..+++|+.|++.++.
T Consensus 153 ~~L~L~~N~i---~~~----~-~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 153 EVLDLHGNEI---TNT----G-GLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CEEECTTSCC---CBC----T-TSTTCCCCCEEEEEEEE
T ss_pred CEEECCCCcC---cch----H-HhccCCCCCEEeCCCCc
Confidence 8888888766 333 1 45567778888888764
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.60 E-value=2.1e-08 Score=88.68 Aligned_cols=177 Identities=11% Similarity=0.012 Sum_probs=97.6
Q ss_pred CCceEEEEEcCCCccccCC----cccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccc-hHH--HHhcc
Q 017981 116 RNVREIEISLNDDECIELP----HCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNN-FSD--WLFSK 186 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~----~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~-~l~--~ll~~ 186 (363)
.++++|+++.+.... ..+ ..+..+++|++|+|++|.+...+ .+..+++|++|+|+++.+.+. ++. ..+..
T Consensus 117 ~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 117 LALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp BCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 467777776655321 111 12235777777777777765432 234677777777777765432 221 11246
Q ss_pred CCccceEEEeeeEeCCCceeE----EEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCc
Q 017981 187 CPALEDLSIKGYIYGTDSVTL----NIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSL 262 (363)
Q Consensus 187 cp~Le~L~L~~c~~~~~~~~l----~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L 262 (363)
+|+|++|.|.+|..... ... .-..++|+.|++++|................++|++|+++++....+...-.++|
T Consensus 196 l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L 274 (310)
T 4glp_A 196 FPAIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKL 274 (310)
T ss_dssp SCCCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCC
T ss_pred CCCCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCC
Confidence 77777777777765432 111 1123677777777776543210101011122677777777766553332223567
Q ss_pred eEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981 263 TKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM 307 (363)
Q Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 307 (363)
+.+++..+.-.. + ..+..+++|+.|.++++.+
T Consensus 275 ~~L~Ls~N~l~~------------~-~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 275 RVLDLSSNRLNR------------A-PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCEECCSCCCCS------------C-CCTTSCCCCSCEECSSTTT
T ss_pred CEEECCCCcCCC------------C-chhhhCCCccEEECcCCCC
Confidence 777665443211 0 1145678888888888765
No 101
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.60 E-value=7.4e-09 Score=96.68 Aligned_cols=75 Identities=16% Similarity=0.097 Sum_probs=50.6
Q ss_pred CcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEE
Q 017981 141 KTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLE 220 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~ 220 (363)
++|++|++++|.+...+....+++|++|++.++.+.+- . ...++|++|.+.+|...+. .. ..++|+.|++.
T Consensus 215 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l--~---~~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls 285 (454)
T 1jl5_A 215 LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL--P---DLPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVS 285 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC--C---SCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECC
T ss_pred CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcc--c---ccccccCEEECCCCccccc-Cc---ccCcCCEEECc
Confidence 57888888888777556666788888888888766531 1 1347788888877765543 11 12667777777
Q ss_pred ecCC
Q 017981 221 LEAP 224 (363)
Q Consensus 221 ~~~~ 224 (363)
+|..
T Consensus 286 ~N~l 289 (454)
T 1jl5_A 286 ENIF 289 (454)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 7654
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.59 E-value=5.2e-08 Score=93.09 Aligned_cols=156 Identities=15% Similarity=-0.014 Sum_probs=106.5
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
.+++.|+++.+... .+| ..+++|++|+|++|.+...|.. ..+|++|+|.++.+++ +.. .+++|++|.|
T Consensus 80 ~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~l--~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI--SLP---ELPASLEYLDACDNRLSTLPEL--PASLKHLDVDNNQLTM--LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSC--CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCCcchh--hcCCCEEECCCCcCCC--CCC---cCccccEEeC
Confidence 57999999776643 555 3478999999999988865542 2289999999987765 222 6899999999
Q ss_pred eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCc-------eEEEEe
Q 017981 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSL-------TKAVVD 268 (363)
Q Consensus 196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L-------~~~~l~ 268 (363)
.+|.+.++ .. ..++|+.|++++|..... .. +. ++|++|+++++....+.. -..+| +.+++.
T Consensus 148 s~N~l~~l-p~---~l~~L~~L~Ls~N~L~~l----p~--l~-~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 148 DNNQLTML-PE---LPTSLEVLSVRNNQLTFL----PE--LP-ESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCR 215 (571)
T ss_dssp CSSCCSCC-CC---CCTTCCEEECCSSCCSCC----CC--CC-TTCCEEECCSSCCSSCCC-CC--------CCEEEECC
T ss_pred CCCccCcC-CC---cCCCcCEEECCCCCCCCc----ch--hh-CCCCEEECcCCCCCchhh-HHHhhhcccccceEEecC
Confidence 99887665 33 457899999999976542 11 12 899999999886653322 11145 666665
Q ss_pred eeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981 269 YGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM 307 (363)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 307 (363)
.+.-.. +...+..+++|+.|.++++.+
T Consensus 216 ~N~l~~------------lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 216 ENRITH------------IPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp SSCCCC------------CCGGGGGSCTTEEEECCSSSC
T ss_pred CCccee------------cCHHHhcCCCCCEEEeeCCcC
Confidence 433210 223344588999999999877
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.57 E-value=1.5e-08 Score=86.71 Aligned_cols=151 Identities=14% Similarity=0.023 Sum_probs=92.0
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (363)
.+++.|++..+... ...+..+..+++|++|+|++|.+...+. +..+++|++|+|.++.+..-. ...+..+++|++|
T Consensus 35 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-hhHhcccCCCCEE
Confidence 36777777655431 1222345567888888888887765432 457788888888888765431 2345677888888
Q ss_pred EEeeeEeCCCceeE-EEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEee
Q 017981 194 SIKGYIYGTDSVTL-NIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDY 269 (363)
Q Consensus 194 ~L~~c~~~~~~~~l-~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~ 269 (363)
.|.+|.+.+. ..- ....++|+.|++.+|........ ....+++|++|+++++..... .+..+++|+.+.+..
T Consensus 113 ~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 113 YLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAG---AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp ECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred EcCCCcCCCc-ChhHhccCCcccEEECcCCcCCccCHH---HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 8888765443 111 11246788888887765432110 112357788888887765433 245667777777665
Q ss_pred eec
Q 017981 270 GIE 272 (363)
Q Consensus 270 ~~~ 272 (363)
+..
T Consensus 189 N~~ 191 (251)
T 3m19_A 189 NQF 191 (251)
T ss_dssp CCB
T ss_pred Cce
Confidence 543
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.56 E-value=8.9e-09 Score=88.23 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=75.9
Q ss_pred ceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 118 VREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 118 l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
.+++++.... -..+|..+. ++|++|+|+++.+...+ .+..+++|++|+|.++.+.+-. ...+..+++|++|.|
T Consensus 16 ~~~l~~~~~~--l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 16 KKEVDCQGKS--LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGL 90 (251)
T ss_dssp GTEEECTTCC--CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEEC
T ss_pred CeEEecCCCC--ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEEC
Confidence 4445443332 234554433 68899999998887543 3567899999999998776542 234677899999999
Q ss_pred eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP 251 (363)
Q Consensus 196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 251 (363)
.+|.+...........++|+.|++.+|......... ...+++|++|.++++..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV---FDRLTKLKELRLNTNQL 143 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhH---hccCCcccEEECcCCcC
Confidence 988754430001112367777777777553221110 12346666666666544
No 105
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.52 E-value=4.3e-08 Score=88.36 Aligned_cols=153 Identities=16% Similarity=0.115 Sum_probs=87.1
Q ss_pred hHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEE-EeccCcceEEEeec---CCCc-
Q 017981 179 FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVI-IRAPNLEQLYIRDH---GPGL- 253 (363)
Q Consensus 179 ~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~p~L~~L~l~~~---~~~~- 253 (363)
++..++..+|+|++|.|.+|. +. ....+..++|++|.+..|..... ....+. ..+|+|++|.++.. ....
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~--~l-~l~~~~~~~L~~L~L~~~~l~~~--~l~~l~~~~lp~L~~L~L~~~~~~~~~~~ 237 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTN--NL-SIGKKPRPNLKSLEIISGGLPDS--VVEDILGSDLPNLEKLVLYVGVEDYGFDG 237 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCB--TC-BCCSCBCTTCSEEEEECSBCCHH--HHHHHHHSBCTTCCEEEEECBCGGGTCCS
T ss_pred CHHHHHhcCCCCcEEEEeCCC--Cc-eeccccCCCCcEEEEecCCCChH--HHHHHHHccCCCCcEEEEeccccccccch
Confidence 467888999999999999863 12 11123478999999987764322 111111 25799999988631 1111
Q ss_pred -e-----ee--ecCCCceEEEEeeeeceeccCCCchhhHHHHHHHh---hccCcceEEEEeCCccccccccccccCCCCC
Q 017981 254 -Y-----VV--HELHSLTKAVVDYGIECILDYDSPEDVAQAVVDML---RDIKNIKSLSLSSGTMFALDRLDYANDHSFP 322 (363)
Q Consensus 254 -~-----~~--~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l---~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~ 322 (363)
. .+ ..+|+|+.+.+..+.. .+.....+ ..+++|+.|.|+.+.+.+ ........ .++
T Consensus 238 ~~~~l~~~l~~~~~p~Lr~L~L~~~~i-----------~~~~~~~la~a~~~~~L~~LdLs~n~L~d-~G~~~L~~-~L~ 304 (362)
T 2ra8_A 238 DMNVFRPLFSKDRFPNLKWLGIVDAEE-----------QNVVVEMFLESDILPQLETMDISAGVLTD-EGARLLLD-HVD 304 (362)
T ss_dssp CGGGTGGGSCTTTCTTCCEEEEESCTT-----------HHHHHHHHHHCSSGGGCSEEECCSSCCBH-HHHHHHHT-THH
T ss_pred hHHHHHHHHhcCCCCCcCEEeCCCCCC-----------chHHHHHHHhCccCCCCCEEECCCCCCCh-HHHHHHHh-hcc
Confidence 1 11 3467888887764321 11111122 246788888887765411 10000111 234
Q ss_pred CCCCcceEEEEeccCCChHHHHHHHHhC
Q 017981 323 TFPFLNRLEVEGVGACGWLSLAHIFSRM 350 (363)
Q Consensus 323 ~~~~L~~L~l~~~~~~~~~~l~~ll~~~ 350 (363)
.+++|+.|++..|. .+..++..+-+..
T Consensus 305 ~l~~L~~L~L~~n~-i~d~~~~~l~~al 331 (362)
T 2ra8_A 305 KIKHLKFINMKYNY-LSDEMKKELQKSL 331 (362)
T ss_dssp HHTTCSEEECCSBB-CCHHHHHHHHHHC
T ss_pred cCCcceEEECCCCc-CCHHHHHHHHHHc
Confidence 56678888887764 4666666665544
No 106
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.50 E-value=1.5e-07 Score=91.41 Aligned_cols=130 Identities=18% Similarity=0.099 Sum_probs=74.3
Q ss_pred CCceEEEEEcCCCccccCCc-ccccCCcccEEEecccccccC-C-CcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981 116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKT-P-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (363)
..+++|+++.... ..+++ .+.++++|++|+|++|.+... + .+.++++|++|+|.++.++.-. ...+.++++|++
T Consensus 52 ~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-GGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-HHHhcCCCCCCE
Confidence 3677777765543 24443 455677888888887776643 2 2456777888888877654321 234667778888
Q ss_pred EEEeeeEeCCCceeEEEe-cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981 193 LSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP 251 (363)
Q Consensus 193 L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 251 (363)
|.|.+|...++ ....+. .++|+.|++.+|..... ........+++|++|.++++..
T Consensus 129 L~Ls~N~l~~l-~~~~~~~L~~L~~L~Ls~N~l~~~--~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 129 LVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp EECTTSCCCCS-TTCCCTTCTTCCEEECCSSCCCCC--CCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC-ChhhhhcCcccCeeccccCccccC--CCchhhccchhhhhhcccCccc
Confidence 88877765444 222222 36677777776654321 0011112345666666665543
No 107
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.46 E-value=9.7e-08 Score=86.03 Aligned_cols=176 Identities=17% Similarity=0.143 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCC-CCcceEEEEecCCC--Ch-hhHHHHHHH-HHhCCceEEEEEcCCCc--------cccCCcccccC
Q 017981 74 RFENFVHRVLLSAS-GNINKFSLRCCGLV--DS-SRLKLWVSF-ATMRNVREIEISLNDDE--------CIELPHCIYTC 140 (363)
Q Consensus 74 ~~~~~i~~~l~~~~-~~l~~l~l~~~~~~--~~-~~~~~wi~~-~~~~~l~~L~l~~~~~~--------~~~l~~~~~~~ 140 (363)
.+.+.+.+++.... ..++.+.+...... .. ..+..+... ...+++++|.+...... ...+...+..+
T Consensus 92 ~~~~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~ 171 (362)
T 2ra8_A 92 EGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM 171 (362)
T ss_dssp TTCCHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTC
T ss_pred cHHHHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcC
Confidence 44456777777777 55778877754311 11 223333321 12359999988432211 11244455668
Q ss_pred CcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHh-ccCCccceEEEeeeE--eCCC------ceeEEE-e
Q 017981 141 KTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLF-SKCPALEDLSIKGYI--YGTD------SVTLNI-P 210 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll-~~cp~Le~L~L~~c~--~~~~------~~~l~i-~ 210 (363)
++|++|+|+++.....+. ...++|++|+|..+.++++++..+. ..+|+|++|.|..+. ..+. ...+.. .
T Consensus 172 P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~ 250 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250 (362)
T ss_dssp TTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTT
T ss_pred CCCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCC
Confidence 999999998874222233 3489999999999888777776665 379999999996432 1111 001111 2
Q ss_pred cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecC
Q 017981 211 SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHG 250 (363)
Q Consensus 211 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 250 (363)
.|+|+.|.+.+|...+.......-...+|+|++|+++.+.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 4788888888776542100000000135677777776543
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.42 E-value=6.7e-08 Score=77.23 Aligned_cols=82 Identities=20% Similarity=0.027 Sum_probs=50.1
Q ss_pred CCcccEEEecccccc--cCCC-cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcce
Q 017981 140 CKTLEVLKLDMNFFI--KTPP-TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR 216 (363)
Q Consensus 140 ~~~L~~L~L~~~~~~--~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~ 216 (363)
.++|++|++++|.+. ..+. +..+++|+.|+|.++.+.+- ..+..+++|++|.+.+|.+.+......-..++|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 367888888888776 3333 35778888888888776543 44667778888888877654420111111355555
Q ss_pred EEEEecCC
Q 017981 217 LRLELEAP 224 (363)
Q Consensus 217 L~l~~~~~ 224 (363)
|++.+|..
T Consensus 100 L~Ls~N~l 107 (168)
T 2ell_A 100 LNLSGNKL 107 (168)
T ss_dssp EECBSSSC
T ss_pred EeccCCcc
Confidence 55555543
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.37 E-value=2.9e-07 Score=82.83 Aligned_cols=217 Identities=14% Similarity=0.065 Sum_probs=116.9
Q ss_pred CCceEEEEEcCCCccccCCcc-cccCCcccEEEecccccccC--C-CcccCccccee-eeeeEEEccchHHHHhccCCcc
Q 017981 116 RNVREIEISLNDDECIELPHC-IYTCKTLEVLKLDMNFFIKT--P-PTIFFPSAKIL-HVILNTIDNNFSDWLFSKCPAL 190 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~--~-~~~~~~~L~~L-~L~~~~~~~~~l~~ll~~cp~L 190 (363)
.++++|+++.+.. ..+|.. +.++++|++|+|++|.+... + .+.++++|+++ .+.++.+..- -...+..+++|
T Consensus 30 ~~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTTC
T ss_pred CCCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhcccc
Confidence 5789999987764 356654 55699999999999976432 2 23467776654 4444433221 12346788999
Q ss_pred ceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeec--CCCceEEEEe
Q 017981 191 EDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHE--LHSLTKAVVD 268 (363)
Q Consensus 191 e~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~--~~~L~~~~l~ 268 (363)
++|.+.+|..............++..|.+.++..... .....+......++.|.++++....+.... ..+|+.+.+.
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECT
T ss_pred ccccccccccccCCchhhcccchhhhhhhcccccccc-ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhc
Confidence 9999999886544122223346677777766532110 000001111245778888887665433222 2334444332
Q ss_pred eeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHH
Q 017981 269 YGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFS 348 (363)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~ 348 (363)
.... .... ....+..+++|+.|+++++.+ ..+.. ..|.+|++|.+..+.... .++. +.
T Consensus 186 ~~n~--l~~i--------~~~~f~~l~~L~~LdLs~N~l---~~lp~------~~~~~L~~L~~l~~~~l~--~lP~-l~ 243 (350)
T 4ay9_X 186 DNNN--LEEL--------PNDVFHGASGPVILDISRTRI---HSLPS------YGLENLKKLRARSTYNLK--KLPT-LE 243 (350)
T ss_dssp TCTT--CCCC--------CTTTTTTEECCSEEECTTSCC---CCCCS------SSCTTCCEEECTTCTTCC--CCCC-TT
T ss_pred cCCc--ccCC--------CHHHhccCcccchhhcCCCCc---CccCh------hhhccchHhhhccCCCcC--cCCC-ch
Confidence 1111 0011 123467888999999998876 33211 134556655554443211 1111 34
Q ss_pred hCCCCcceEE
Q 017981 349 RMPKLESIVF 358 (363)
Q Consensus 349 ~~p~L~~L~l 358 (363)
..++|+.+++
T Consensus 244 ~l~~L~~l~l 253 (350)
T 4ay9_X 244 KLVALMEASL 253 (350)
T ss_dssp TCCSCCEEEC
T ss_pred hCcChhhCcC
Confidence 4555555554
No 110
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.34 E-value=5e-08 Score=80.32 Aligned_cols=87 Identities=21% Similarity=0.130 Sum_probs=59.7
Q ss_pred cCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEe-
Q 017981 132 ELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP- 210 (363)
Q Consensus 132 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~- 210 (363)
.+|..+..+++|++|+|++|.+...+....+++|+.|+|.++.+.. +...+..+|+|++|.+.+|.+.+. . .+.
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l-~--~~~~ 113 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASL-S--GIEK 113 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCH-H--HHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcC-C--cccc
Confidence 3444666788899999988888766666678888888888888763 344555678888888888876554 2 111
Q ss_pred cCCcceEEEEecC
Q 017981 211 SLTLKRLRLELEA 223 (363)
Q Consensus 211 ~~~L~~L~l~~~~ 223 (363)
.++|+.|++.+|.
T Consensus 114 l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 114 LVNLRVLYMSNNK 126 (198)
T ss_dssp HHHSSEEEESEEE
T ss_pred CCCCCEEECCCCc
Confidence 2455555555554
No 111
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.33 E-value=1.5e-08 Score=91.88 Aligned_cols=57 Identities=11% Similarity=-0.012 Sum_probs=35.6
Q ss_pred HHHHhhccCcceEEEEeCCcccccc--ccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHH
Q 017981 287 VVDMLRDIKNIKSLSLSSGTMFALD--RLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFS 348 (363)
Q Consensus 287 ~~~~l~~l~~l~~L~l~~~~~~~~~--~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~ 348 (363)
+...+...++|+.|+++++.+.+.. .+.. .+...++|++|+++++.- +..+...+..
T Consensus 203 L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~----~L~~~~~L~~L~Ls~N~i-~~~g~~~L~~ 261 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYNGAGDTAALALAR----AAREHPSLELLHLYFNEL-SSEGRQVLRD 261 (372)
T ss_dssp HHHHGGGCSCCCEEECCSSCCCHHHHHHHHH----HHHHCSSCCEEECTTSSC-CHHHHHHHHH
T ss_pred HHHHHhcCCCcCeEECCCCCCCHHHHHHHHH----HHHhCCCCCEEeccCCCC-CHHHHHHHHH
Confidence 5677778888999999888662110 1111 122446788888888764 6666665543
No 112
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.31 E-value=2.4e-08 Score=80.57 Aligned_cols=32 Identities=13% Similarity=0.012 Sum_probs=16.0
Q ss_pred eccCcceEEEeecCCCce------eeecCCCceEEEEe
Q 017981 237 RAPNLEQLYIRDHGPGLY------VVHELHSLTKAVVD 268 (363)
Q Consensus 237 ~~p~L~~L~l~~~~~~~~------~~~~~~~L~~~~l~ 268 (363)
.+|+|++|.++++..... .+..+|+|+.+++.
T Consensus 111 ~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 111 SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence 345555555555433211 24456666665544
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.30 E-value=2.5e-07 Score=77.94 Aligned_cols=125 Identities=18% Similarity=-0.004 Sum_probs=73.7
Q ss_pred CcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeE-EEecCCcceE
Q 017981 141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL-NIPSLTLKRL 217 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l-~i~~~~L~~L 217 (363)
++|++|+|++|.+.... .+..+++|+.|+|.++.+..-. ...+.++++|++|.|.+|.+... ..- .-..++|+.|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeE
Confidence 67777777777766542 2446777777777777663321 23356677777777777764433 111 1123677777
Q ss_pred EEEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeeee
Q 017981 218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGI 271 (363)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~ 271 (363)
++.+|........ ...+++|++|+++++....+. +..+++|+.+.+..++
T Consensus 118 ~Ls~N~l~~lp~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 118 FMCCNKLTELPRG----IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp ECCSSCCCSCCTT----GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eccCCcccccCcc----cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 7777765422111 135577888888877554332 4556777777665554
No 114
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=1e-07 Score=76.01 Aligned_cols=68 Identities=7% Similarity=0.030 Sum_probs=42.6
Q ss_pred cCCcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEE-EccchHHHHhcc---CCccceEEEeeeE
Q 017981 132 ELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNT-IDNNFSDWLFSK---CPALEDLSIKGYI 199 (363)
Q Consensus 132 ~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~---cp~Le~L~L~~c~ 199 (363)
.+|......-+|++|++++|.+.+. ....++++|++|+|++|. +++.++..+... |++|++|.|.+|.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 5554333445677777777765421 223467777777777774 555576666552 6677777777765
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.28 E-value=2.4e-07 Score=77.55 Aligned_cols=128 Identities=15% Similarity=0.084 Sum_probs=73.2
Q ss_pred CcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEE
Q 017981 141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLR 218 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~ 218 (363)
++|+.|+|+++.+...+ .+..+++|+.|+|.++.+..-. ...+.++++|++|.|.+|.+..+........++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 56777777777665432 3456777777777777654321 22355667777777777664433111111236677777
Q ss_pred EEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeeeec
Q 017981 219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGIE 272 (363)
Q Consensus 219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~~ 272 (363)
+.+|........ ....+++|++|+++++....+. +..+++|+.+.+..++.
T Consensus 111 L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNANKINCLRVD---AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEeCHH---HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 777755432111 1123577888888777554332 45567777777765554
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.27 E-value=2.4e-07 Score=78.06 Aligned_cols=130 Identities=15% Similarity=0.033 Sum_probs=92.5
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (363)
.+++.|+++.+... ...|..+..+++|++|+|++|.+...+. +..+++|+.|+|+++.++.- ....+..+++|++|
T Consensus 40 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeE
Confidence 57888888776642 2234556679999999999998875543 46899999999999987643 13446789999999
Q ss_pred EEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981 194 SIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP 251 (363)
Q Consensus 194 ~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 251 (363)
.|.+|.+..+...+ ...++|+.|++.+|........ ....+++|+.|.++++..
T Consensus 118 ~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 118 FMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPHG---AFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp ECCSSCCCSCCTTG-GGCTTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECTTSCB
T ss_pred eccCCcccccCccc-ccCCCCCEEECCCCcCCccCHH---HHhCCCCCCEEEeeCCCc
Confidence 99998865441111 2348999999999976533111 113468999999998754
No 117
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.26 E-value=1.1e-07 Score=82.42 Aligned_cols=174 Identities=10% Similarity=0.048 Sum_probs=94.7
Q ss_pred CCceEEEEEcCCCccccCC-cccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981 116 RNVREIEISLNDDECIELP-HCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (363)
.+++.|+++.+.. ..++ ..+..+++|++|+|++|.+...+ .+..+++|++|++.++.+..-. ...+..+++|++
T Consensus 52 ~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~ 128 (276)
T 2z62_A 52 PELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKE 128 (276)
T ss_dssp TTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST-TCCCTTCTTCCE
T ss_pred cCCcEEECCCCcC--CccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccC-chhcccCCCCCE
Confidence 4677777765543 1233 24455777888888877665432 3456777888887777655431 112566777888
Q ss_pred EEEeeeEeCCCcee-EEE-ecCCcceEEEEecCCccccCCceEEEEeccCcc----eEEEeecCCCceee--ecCCCceE
Q 017981 193 LSIKGYIYGTDSVT-LNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLE----QLYIRDHGPGLYVV--HELHSLTK 264 (363)
Q Consensus 193 L~L~~c~~~~~~~~-l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~----~L~l~~~~~~~~~~--~~~~~L~~ 264 (363)
|.+.+|...+. .. -.+ ..++|+.|++.+|......... ....++|+ +|.++++....... ....+|+.
T Consensus 129 L~l~~n~l~~~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~ 204 (276)
T 2z62_A 129 LNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTD---LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE 204 (276)
T ss_dssp EECCSSCCCCC-CCCGGGGGCTTCCEEECCSSCCCEECGGG---GHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEE
T ss_pred EECcCCcccee-cCchhhccCCCCCEEECCCCCCCcCCHHH---hhhhhhccccceeeecCCCcccccCccccCCCcccE
Confidence 88877765432 10 011 1367777877777543210000 01233444 56666655443221 12235666
Q ss_pred EEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981 265 AVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM 307 (363)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 307 (363)
+++..+.-.. . ....+..+++++.|+++++.+
T Consensus 205 L~L~~n~l~~---~--------~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 205 LALDTNQLKS---V--------PDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp EECCSSCCSC---C--------CTTTTTTCCSCCEEECCSSCB
T ss_pred EECCCCceee---c--------CHhHhcccccccEEEccCCcc
Confidence 6655433110 0 123356677888888887766
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.26 E-value=5.6e-08 Score=78.38 Aligned_cols=133 Identities=11% Similarity=-0.033 Sum_probs=68.7
Q ss_pred cccCCcccEEEecccccccCCCcccCc-ccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcc
Q 017981 137 IYTCKTLEVLKLDMNFFIKTPPTIFFP-SAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLK 215 (363)
Q Consensus 137 ~~~~~~L~~L~L~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~ 215 (363)
+..+++|++|++++|.+...+....+. +|+.|+|+++.+.+- .-+..+++|++|.+.+|.+.+. .. .
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~-~~-~------- 82 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRI-GE-G------- 82 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEE-CS-C-------
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCccccc-Cc-c-------
Confidence 345667777777777666444444433 667777766655432 2345566666666666543221 00 0
Q ss_pred eEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce----eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHh
Q 017981 216 RLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY----VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDML 291 (363)
Q Consensus 216 ~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 291 (363)
+...+|+|++|+++++....+ .+..+++|+.+.+..+.-.. .+..-...+
T Consensus 83 ------------------~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~--------~~~~~~~~~ 136 (176)
T 1a9n_A 83 ------------------LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN--------KKHYRLYVI 136 (176)
T ss_dssp ------------------HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG--------STTHHHHHH
T ss_pred ------------------hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC--------cHhHHHHHH
Confidence 001233444444444333211 24566777777766544211 111123356
Q ss_pred hccCcceEEEEeCCcc
Q 017981 292 RDIKNIKSLSLSSGTM 307 (363)
Q Consensus 292 ~~l~~l~~L~l~~~~~ 307 (363)
..+++|+.|+++.+..
T Consensus 137 ~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 137 YKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHCTTCSEETTEECCH
T ss_pred HHCCccceeCCCcCCH
Confidence 7777888887777655
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.25 E-value=1e-07 Score=74.53 Aligned_cols=80 Identities=19% Similarity=0.041 Sum_probs=51.0
Q ss_pred CCcccEEEecccccc--cCCC-cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCC-CceeEEEecCCcc
Q 017981 140 CKTLEVLKLDMNFFI--KTPP-TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGT-DSVTLNIPSLTLK 215 (363)
Q Consensus 140 ~~~L~~L~L~~~~~~--~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~~l~i~~~~L~ 215 (363)
.++|++|++++|.+. ..+. ...+++|+.|+|.++.+.+- ..+..+++|++|.+.+|...+ . .......++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGL-EVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCT-HHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchH-HHHhhhCCCCC
Confidence 467888888888776 3333 35788888888888876553 446677888888888876544 2 11111234555
Q ss_pred eEEEEecC
Q 017981 216 RLRLELEA 223 (363)
Q Consensus 216 ~L~l~~~~ 223 (363)
.|++.+|.
T Consensus 92 ~L~ls~N~ 99 (149)
T 2je0_A 92 HLNLSGNK 99 (149)
T ss_dssp EEECTTSC
T ss_pred EEECCCCc
Confidence 55555554
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.22 E-value=3.2e-07 Score=76.82 Aligned_cols=127 Identities=15% Similarity=0.044 Sum_probs=60.5
Q ss_pred cccEEEecccccccCC--C-cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEE
Q 017981 142 TLEVLKLDMNFFIKTP--P-TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLR 218 (363)
Q Consensus 142 ~L~~L~L~~~~~~~~~--~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~ 218 (363)
.+++|+|+++.+...+ . +..+++|+.|+|.++.+++-. ...+.++++|++|.|.+|.+.+.........++|++|+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 3455555555554321 1 335555555555555443221 11244555556665555554332000001125555555
Q ss_pred EEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeeeec
Q 017981 219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIE 272 (363)
Q Consensus 219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~ 272 (363)
+.+|........ ....+++|++|+++++..... .+..+++|+.+.+..++.
T Consensus 112 Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 112 LRSNRITCVGND---SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CTTSCCCCBCTT---SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCCcCCeECHh---HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 555544321000 012346677777776655433 245667777777765554
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.22 E-value=3.8e-07 Score=75.54 Aligned_cols=60 Identities=20% Similarity=0.180 Sum_probs=27.0
Q ss_pred cCCcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeE
Q 017981 139 TCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI 199 (363)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~ 199 (363)
.+++|++|+++++.+...+. +..+++|++|+|.++.+..-. ...+..+++|++|.+.+|.
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP-NGVFDKLTQLKELALNTNQ 111 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC-HhHhcCccCCCEEEcCCCc
Confidence 35555555555554443221 234455555555555443221 1223445555555555544
No 122
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.21 E-value=6.2e-07 Score=77.28 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=33.9
Q ss_pred cccCCCChHHHHHHhcCCChhHhh-hhhhhccchhhh
Q 017981 9 DRISCLPNAILCHILSFLPTKYAV-ATCVLSSTWKLV 44 (363)
Q Consensus 9 d~i~~LPd~il~~Ils~L~~~d~~-~~~~vskrWr~l 44 (363)
..+..||+|++.+||++||.++++ ++++|||+|+.+
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 468899999999999999999999 999999999975
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.20 E-value=5.1e-07 Score=74.77 Aligned_cols=126 Identities=17% Similarity=0.034 Sum_probs=84.1
Q ss_pred CCcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEE-EecCCcce
Q 017981 140 CKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLN-IPSLTLKR 216 (363)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~-i~~~~L~~ 216 (363)
.++|++|+++++.+...+. +..+++|++|+|.++.+..- ....+..+++|++|.+.+|.+.+. ..-. ...++|+.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCE
Confidence 4689999999998875543 45899999999999977643 234467899999999999875544 1111 12478889
Q ss_pred EEEEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeee
Q 017981 217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYG 270 (363)
Q Consensus 217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~ 270 (363)
|++.+|........ ....+++|++|+++++...... +..+++|+.+.+..+
T Consensus 105 L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 105 LALNTNQLQSLPDG---VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEcCCCcCcccCHh---HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 98888865432111 1124578888888877554322 345566666665544
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.16 E-value=4.8e-07 Score=75.72 Aligned_cols=128 Identities=15% Similarity=0.046 Sum_probs=87.8
Q ss_pred CCceEEEEEcCCCccccCCc-ccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981 116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (363)
.++++|.+..+.. ..++. .+..+++|++|+|++|.+... ..+..+++|++|+|+++.++.- -..++.++++|++
T Consensus 32 ~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCE
Confidence 4688888876654 23443 455688999999999887753 3456889999999999887643 1334678899999
Q ss_pred EEEeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecC
Q 017981 193 LSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHG 250 (363)
Q Consensus 193 L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 250 (363)
|.|.+|.+.+. ..-.+ ..++|+.|++.+|........ .....++|++|.++++.
T Consensus 109 L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 109 LLLNANKINCL-RVDAFQDLHNLNLLSLYDNKLQTIAKG---TFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSC
T ss_pred EECCCCCCCEe-CHHHcCCCCCCCEEECCCCcCCEECHH---HHhCCCCCCEEEeCCCC
Confidence 99999875544 11111 237899999999876543111 11246889999998874
No 125
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.12 E-value=5.2e-07 Score=76.90 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=32.3
Q ss_pred ccCCCChHHHHHHhcCCChhHhhhhhhhccchhh
Q 017981 10 RISCLPNAILCHILSFLPTKYAVATCVLSSTWKL 43 (363)
Q Consensus 10 ~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~ 43 (363)
.|++||+||+.+||+||+.+|+++++.|||+||.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999995
No 126
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=9.9e-07 Score=70.25 Aligned_cols=81 Identities=14% Similarity=0.050 Sum_probs=63.7
Q ss_pred CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCc---cc----CcccceeeeeeEE-EccchHHHHhccCC
Q 017981 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPT---IF----FPSAKILHVILNT-IDNNFSDWLFSKCP 188 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~---~~----~~~L~~L~L~~~~-~~~~~l~~ll~~cp 188 (363)
.+++|+++.+......+.. +..|++|++|+|++|...++.+. .. +++|++|+|++|. +++.++..+ ..||
T Consensus 62 ~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCT
T ss_pred eEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCC
Confidence 6999999988765555543 46899999999999975444222 12 4689999999995 888888876 5799
Q ss_pred ccceEEEeeeE
Q 017981 189 ALEDLSIKGYI 199 (363)
Q Consensus 189 ~Le~L~L~~c~ 199 (363)
+|++|.|.+|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999986
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.09 E-value=9e-07 Score=74.04 Aligned_cols=130 Identities=11% Similarity=0.017 Sum_probs=83.2
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (363)
..+++|.++.+......-+..+..+++|++|+|+++.+...+ .+..+++|++|+|.++.++.-. ...+.++++|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ-HKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-GGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC-HhHhcCCcCCCEE
Confidence 356777776655422212233556888888888888776543 3567888888888888775442 3346778888888
Q ss_pred EEeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecC
Q 017981 194 SIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHG 250 (363)
Q Consensus 194 ~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 250 (363)
.|.+|.+.+. ..-.+ ..++|+.|++.+|........ ....+++|++|.++++.
T Consensus 111 ~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 111 MLRSNRITCV-GNDSFIGLSSVRLLSLYDNQITTVAPG---AFDTLHSLSTLNLLANP 164 (220)
T ss_dssp ECTTSCCCCB-CTTSSTTCTTCSEEECTTSCCCCBCTT---TTTTCTTCCEEECCSCC
T ss_pred ECCCCcCCeE-CHhHcCCCccCCEEECCCCcCCEECHH---HhcCCCCCCEEEecCcC
Confidence 8888875443 11111 237888888888865432111 11246788888888764
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.07 E-value=3.7e-07 Score=82.50 Aligned_cols=83 Identities=18% Similarity=0.033 Sum_probs=47.7
Q ss_pred CcccEEEecccccccCC-C-cc-cCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceE
Q 017981 141 KTLEVLKLDMNFFIKTP-P-TI-FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRL 217 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~~~-~-~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L 217 (363)
+.++.|+|+++.+...+ . +. .+++|++|+|.++.+..-. ...+.++++|++|+|.+|.+...........++|+.|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 45778888887776432 2 33 6778888888877665431 1235677888888887765322100000012556666
Q ss_pred EEEecCC
Q 017981 218 RLELEAP 224 (363)
Q Consensus 218 ~l~~~~~ 224 (363)
++.+|..
T Consensus 118 ~L~~N~i 124 (361)
T 2xot_A 118 LLYNNHI 124 (361)
T ss_dssp ECCSSCC
T ss_pred ECCCCcc
Confidence 6665543
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.03 E-value=1.1e-06 Score=79.34 Aligned_cols=153 Identities=16% Similarity=0.075 Sum_probs=98.8
Q ss_pred CCceEEEEEcCCCccccCCcc-cc-cCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccc
Q 017981 116 RNVREIEISLNDDECIELPHC-IY-TCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALE 191 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~-~~-~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 191 (363)
..++.|+++.+.. ..++.. +. .+++|++|+|++|.+...+ .+..+++|+.|+|+++.+..- ....+.++++|+
T Consensus 39 ~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred CCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCC
Confidence 3577888876653 234443 33 7899999999999887543 356889999999999977543 123467889999
Q ss_pred eEEEeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCC--ceEE
Q 017981 192 DLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHS--LTKA 265 (363)
Q Consensus 192 ~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~--L~~~ 265 (363)
+|.|.+|.+... ..-.+ ..++|+.|++.+|...........-...+++|+.|+++++....+. +..++. ++.+
T Consensus 116 ~L~L~~N~i~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 116 VLLLYNNHIVVV-DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp EEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTE
T ss_pred EEECCCCcccEE-CHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceE
Confidence 999999874322 10011 2378999999998765431111111145789999999988765443 344554 3556
Q ss_pred EEeeeec
Q 017981 266 VVDYGIE 272 (363)
Q Consensus 266 ~l~~~~~ 272 (363)
.+..++.
T Consensus 195 ~l~~N~~ 201 (361)
T 2xot_A 195 YLHNNPL 201 (361)
T ss_dssp ECCSSCE
T ss_pred EecCCCc
Confidence 6665544
No 130
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.01 E-value=2.8e-07 Score=89.43 Aligned_cols=171 Identities=12% Similarity=0.008 Sum_probs=94.5
Q ss_pred ccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEecc
Q 017981 160 IFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAP 239 (363)
Q Consensus 160 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p 239 (363)
..+++|+.+++..+......-...+..+++|+.+.+..|.............++|+.|.+.+|..... ........++
T Consensus 417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~--~~~~~~~~l~ 494 (635)
T 4g8a_A 417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELR 494 (635)
T ss_dssp TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG--EECSCCTTCT
T ss_pred cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc--cCchhhhhcc
Confidence 35556666666555443332223345566666666665542211000111236788888877743211 0011123467
Q ss_pred CcceEEEeecCCCce---eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccc
Q 017981 240 NLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYA 316 (363)
Q Consensus 240 ~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~ 316 (363)
+|++|+++++..... .+.++++|+.+++..+.-.. . ....+.++++|+.|+++++.+ ..+..
T Consensus 495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~---l--------~~~~~~~l~~L~~L~Ls~N~l---~~~~~- 559 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS---L--------DTFPYKCLNSLQVLDYSLNHI---MTSKK- 559 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB---C--------CCGGGTTCTTCCEEECTTSCC---CBCCS-
T ss_pred ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC---C--------ChhHHhCCCCCCEEECCCCcC---CCCCH-
Confidence 899999998866544 35678888888876543211 0 123367788999999998876 43322
Q ss_pred cCCCCCCC-CCcceEEEEeccC---CChHHHHHHHHh
Q 017981 317 NDHSFPTF-PFLNRLEVEGVGA---CGWLSLAHIFSR 349 (363)
Q Consensus 317 ~~~~~~~~-~~L~~L~l~~~~~---~~~~~l~~ll~~ 349 (363)
. .+..+ .+|+.|++++++- ++..++...++.
T Consensus 560 -~-~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~ 594 (635)
T 4g8a_A 560 -Q-ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 594 (635)
T ss_dssp -S-CTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHH
T ss_pred -H-HHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHh
Confidence 1 22233 5789999988653 233455555544
No 131
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.95 E-value=9.4e-08 Score=86.68 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=88.5
Q ss_pred HhCCceEEEEEcCCCcc---ccCCccccc-CCcccEEEecccccccC---CCcccCcccceeeeeeEEEccchHHHH---
Q 017981 114 TMRNVREIEISLNDDEC---IELPHCIYT-CKTLEVLKLDMNFFIKT---PPTIFFPSAKILHVILNTIDNNFSDWL--- 183 (363)
Q Consensus 114 ~~~~l~~L~l~~~~~~~---~~l~~~~~~-~~~L~~L~L~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l--- 183 (363)
+...+++++++.+.... ..+...+.. +++|++|+|++|.+.+. .-...+++|++|+|++|.+++.+...+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 34577777776554321 122222222 46888888888876532 112246678888888887776644333
Q ss_pred h-ccCCccceEEEeeeEeCCCceeEE-----EecCCcceEEEEecCCccccCC-ceEEEEeccCcceEEEeecCCCceee
Q 017981 184 F-SKCPALEDLSIKGYIYGTDSVTLN-----IPSLTLKRLRLELEAPEEDYIT-KYKVIIRAPNLEQLYIRDHGPGLYVV 256 (363)
Q Consensus 184 l-~~cp~Le~L~L~~c~~~~~~~~l~-----i~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~p~L~~L~l~~~~~~~~~~ 256 (363)
+ ..+++|++|.|.+|.+... .... ...++|++|++.+|...+.... ........++|++|+++++..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i----- 223 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAA-GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA----- 223 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHH-HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC-----
T ss_pred HHhcCCccceeeCCCCCCChH-HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC-----
Confidence 2 3567788888888764321 1101 1235677777776654321000 000001234555555555432
Q ss_pred ecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981 257 HELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM 307 (363)
Q Consensus 257 ~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 307 (363)
.+.....+...+...++|+.|+++++.+
T Consensus 224 -----------------------~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 224 -----------------------GDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp -----------------------CHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred -----------------------CHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 1111223556666778888888887765
No 132
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.92 E-value=2.7e-06 Score=79.18 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=37.1
Q ss_pred CCCcccCCCChHHHHHHhcCCChhHhhhhhhhccchhhhhc
Q 017981 6 STEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWT 46 (363)
Q Consensus 6 ~~~d~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l~~ 46 (363)
-..|.|+.||+|++.+||+|||.+|++++++|||+|+++..
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~ 50 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR 50 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999999999986533
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.88 E-value=3.1e-06 Score=69.13 Aligned_cols=80 Identities=19% Similarity=0.127 Sum_probs=39.7
Q ss_pred CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (363)
++++|.+..+.. ..+|..+..+++|++|+|++|.+...+ .+..+++|++|+|.++.+..-. ...+.++++|++|.
T Consensus 32 ~l~~L~L~~n~i--~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 32 DVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLLS 108 (193)
T ss_dssp TCCEEECCSSCC--CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcC--chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEEE
Confidence 455555544432 134444445556666666665555332 1345555666666555544321 11244555555555
Q ss_pred EeeeE
Q 017981 195 IKGYI 199 (363)
Q Consensus 195 L~~c~ 199 (363)
|.+|.
T Consensus 109 L~~N~ 113 (193)
T 2wfh_A 109 LHGND 113 (193)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 55554
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.86 E-value=2.1e-06 Score=82.21 Aligned_cols=79 Identities=20% Similarity=0.231 Sum_probs=41.3
Q ss_pred CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (363)
.++.|+++.+.. ..+|. +..+++|+.|+|++|.+...| .+..+++|+.|+|+++.+++ +. -+..+++|++|.|
T Consensus 442 ~L~~L~Ls~n~l--~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDL--TVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCC--SSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCC--CCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEEC
Confidence 455555544432 12443 555666666666666555332 23355666666666665543 22 2455566666666
Q ss_pred eeeEeC
Q 017981 196 KGYIYG 201 (363)
Q Consensus 196 ~~c~~~ 201 (363)
.+|.+.
T Consensus 516 s~N~l~ 521 (567)
T 1dce_A 516 CNNRLQ 521 (567)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 665543
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.85 E-value=3.2e-06 Score=75.92 Aligned_cols=182 Identities=13% Similarity=0.005 Sum_probs=98.3
Q ss_pred cCCcccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeee-EeCCCceeEE
Q 017981 132 ELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGY-IYGTDSVTLN 208 (363)
Q Consensus 132 ~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c-~~~~~~~~l~ 208 (363)
.+|..+ .+++++|+|+++.+...+ .+.++++|++|+|+++.+.+.-=...+.++++|+++....+ ....+.....
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 456544 368999999999887644 35689999999999986543210234677888887655543 2211100011
Q ss_pred EecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCC-cee---eecC-CCceEEEEeeeeceeccCCCchhh
Q 017981 209 IPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG-LYV---VHEL-HSLTKAVVDYGIECILDYDSPEDV 283 (363)
Q Consensus 209 i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~-~~~---~~~~-~~L~~~~l~~~~~~~~~~~~~~~~ 283 (363)
...++|+.|.+.+|....... .......++..|.+.++... ... +..+ ..++.+.+....-..
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--------- 168 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPD---VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--------- 168 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCC---CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE---------
T ss_pred hhccccccccccccccccCCc---hhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC---------
Confidence 224789999999987643211 01134456777777664322 111 1222 235555544332110
Q ss_pred HHHHHHHhhccCcceEEEEeCC-ccccccccccccCCCCCCCCCcceEEEEecc
Q 017981 284 AQAVVDMLRDIKNIKSLSLSSG-TMFALDRLDYANDHSFPTFPFLNRLEVEGVG 336 (363)
Q Consensus 284 ~~~~~~~l~~l~~l~~L~l~~~-~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 336 (363)
+..-+-...+++.|.+... .+ ..+.. + .+..+++|+.|+++.+.
T Consensus 169 ---i~~~~f~~~~L~~l~l~~~n~l---~~i~~--~-~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 169 ---IHNSAFNGTQLDELNLSDNNNL---EELPN--D-VFHGASGPVILDISRTR 213 (350)
T ss_dssp ---ECTTSSTTEEEEEEECTTCTTC---CCCCT--T-TTTTEECCSEEECTTSC
T ss_pred ---CChhhccccchhHHhhccCCcc---cCCCH--H-HhccCcccchhhcCCCC
Confidence 0001112346777777643 33 22211 1 23456778888888764
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.85 E-value=3.7e-06 Score=68.64 Aligned_cols=88 Identities=17% Similarity=0.049 Sum_probs=50.8
Q ss_pred cCCcccccCCcccEEEecccccccCCC---cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEE
Q 017981 132 ELPHCIYTCKTLEVLKLDMNFFIKTPP---TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLN 208 (363)
Q Consensus 132 ~l~~~~~~~~~L~~L~L~~~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~ 208 (363)
.+|..+. ++|++|.|+++.+...+. +..+++|++|+|.++.+++-. ...+.++++|++|.|.+|.+.+. ..-.
T Consensus 22 ~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~ 97 (192)
T 1w8a_A 22 EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEI-SNKM 97 (192)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEE-CSSS
T ss_pred cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCcc-CHHH
Confidence 4454333 377888888877765432 457778888888887765431 23356677888888877764332 1000
Q ss_pred E-ecCCcceEEEEecC
Q 017981 209 I-PSLTLKRLRLELEA 223 (363)
Q Consensus 209 i-~~~~L~~L~l~~~~ 223 (363)
+ ..++|+.|++.+|.
T Consensus 98 ~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp STTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCc
Confidence 1 12455555555554
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.80 E-value=6.2e-06 Score=66.23 Aligned_cols=106 Identities=17% Similarity=0.081 Sum_probs=50.3
Q ss_pred CcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEE-EecCCcceE
Q 017981 141 KTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLN-IPSLTLKRL 217 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~-i~~~~L~~L 217 (363)
++|++|+++++.+...+. +..+++|++|+|.++.++.-. ...+..+++|++|.+.+|.+.+. ..-. ...++|+.|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCCcccc-CHHHhhCCcccCEE
Confidence 455666666555543321 234556666666655543221 12234556666666665553332 1100 112556666
Q ss_pred EEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981 218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP 251 (363)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 251 (363)
++.+|........ ....+++|++|+++++..
T Consensus 106 ~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 106 ALDTNQLKSVPDG---IFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ECCSSCCSCCCTT---TTTTCTTCCEEECCSSCB
T ss_pred ECcCCcceEeCHH---HhcCCcccCEEEecCCCe
Confidence 6665544321110 012346777777776643
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.79 E-value=8.4e-06 Score=65.45 Aligned_cols=121 Identities=17% Similarity=0.057 Sum_probs=53.8
Q ss_pred cEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeE-EEecCCcceEEEEec
Q 017981 144 EVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL-NIPSLTLKRLRLELE 222 (363)
Q Consensus 144 ~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l-~i~~~~L~~L~l~~~ 222 (363)
+.+++.++.+...| ...+++|++|+|.++.+..- ....+..+++|++|.+.+|.+.+. ..- ....++|+.|++.+|
T Consensus 10 ~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVP-TGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCC-CCCCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCC
Confidence 44555554444322 22235566666665554322 112244556666666665553332 110 012255666666655
Q ss_pred CCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeee
Q 017981 223 APEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYG 270 (363)
Q Consensus 223 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~ 270 (363)
........ .....++|++|+++++....+. +..+++|+.+.+..+
T Consensus 87 ~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 87 KLQSLPNG---VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CccccCHH---HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 44321000 0012455666666655443222 234555555555444
No 139
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.78 E-value=8.9e-06 Score=75.29 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=37.7
Q ss_pred CCCCCCcccCCCChHHHHHHhcCCChhHhhhhhhhccchhhh
Q 017981 3 NGPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLV 44 (363)
Q Consensus 3 ~~~~~~d~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l 44 (363)
++....|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus 11 ~~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 11 EPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred CccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 344567899999999999999999999999999999999853
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.73 E-value=5.7e-06 Score=79.19 Aligned_cols=78 Identities=14% Similarity=-0.018 Sum_probs=41.2
Q ss_pred cccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEe-cCCcceEEEE
Q 017981 142 TLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTLKRLRLE 220 (363)
Q Consensus 142 ~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~ 220 (363)
.|+.|+|++|.+...|.+..+++|+.|+|+++.++. +..-+.++++|+.|.|.+|.+.++ . .+. .++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~l-p--~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENV-D--GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCC-G--GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccc--cchhhhcCCCCCEEECCCCCCCCC-c--ccCCCCCCcEEECC
Confidence 355666666665554555566666666666665541 222345566666666666554443 2 111 2455555555
Q ss_pred ecCC
Q 017981 221 LEAP 224 (363)
Q Consensus 221 ~~~~ 224 (363)
+|..
T Consensus 517 ~N~l 520 (567)
T 1dce_A 517 NNRL 520 (567)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 5443
No 141
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.71 E-value=9.3e-06 Score=74.96 Aligned_cols=40 Identities=30% Similarity=0.364 Sum_probs=36.5
Q ss_pred CCCCCcccCCCChH----HHHHHhcCCChhHhhhhhhhccchhh
Q 017981 4 GPSTEDRISCLPNA----ILCHILSFLPTKYAVATCVLSSTWKL 43 (363)
Q Consensus 4 ~~~~~d~i~~LPd~----il~~Ils~L~~~d~~~~~~vskrWr~ 43 (363)
+.-..|.|+.||+| ++.+||+||+.++++++++|||+|+.
T Consensus 4 ~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 4 IMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 33457899999999 99999999999999999999999984
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.67 E-value=1.4e-05 Score=65.31 Aligned_cols=60 Identities=20% Similarity=0.162 Sum_probs=35.8
Q ss_pred CcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeC
Q 017981 141 KTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYG 201 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~ 201 (363)
++|++|+|+++.+...+ .+..+++|+.|+|+++.++.-. ...+.++++|++|+|.+|...
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCccC
Confidence 46777777777666443 3345667777777776655331 123556677777777666543
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=3.5e-05 Score=68.45 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=64.1
Q ss_pred ccCcceEEEeecCCC---ceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcce-EEEEeCCcccccccc
Q 017981 238 APNLEQLYIRDHGPG---LYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIK-SLSLSSGTMFALDRL 313 (363)
Q Consensus 238 ~p~L~~L~l~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~L~l~~~~~~~~~~l 313 (363)
+++|++++++++... ...+.++.+|+.+.+....... ....+.++++|+ .+.+.. .. ..+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I------------~~~aF~~~~~L~~~l~l~~-~l---~~I 288 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTI------------GQRVFSNCGRLAGTLELPA-SV---TAI 288 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEE------------CTTTTTTCTTCCEEEEECT-TC---CEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCccccee------------hHHHhhCChhccEEEEEcc-cc---eEE
Confidence 789999999986543 2347788899988775432111 234577899999 999987 33 333
Q ss_pred ccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEE
Q 017981 314 DYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVF 358 (363)
Q Consensus 314 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l 358 (363)
.. . .+..+.+|++|.+..+.-... -...+.+|++|+++..
T Consensus 289 ~~--~-aF~~c~~L~~l~l~~n~i~~I--~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 289 EF--G-AFMGCDNLRYVLATGDKITTL--GDELFGNGVPSKLIYK 328 (329)
T ss_dssp CT--T-TTTTCTTEEEEEECSSCCCEE--CTTTTCTTCCCCEEEC
T ss_pred ch--h-hhhCCccCCEEEeCCCccCcc--chhhhcCCcchhhhcc
Confidence 32 1 344677888888855421110 1124678999998864
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.64 E-value=8.2e-06 Score=66.54 Aligned_cols=82 Identities=15% Similarity=0.028 Sum_probs=62.0
Q ss_pred CceEEEEEcCCCccccCCc--ccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981 117 NVREIEISLNDDECIELPH--CIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (363)
Q Consensus 117 ~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (363)
++++|.+..+.. ..++. .+..+++|++|+|++|.+... ..+..+++|+.|+|+++.+.+-. ...+.++++|++
T Consensus 30 ~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~ 106 (192)
T 1w8a_A 30 HTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLKT 106 (192)
T ss_dssp TCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCCE
T ss_pred CCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCCCCE
Confidence 788888876653 23443 366799999999999988764 24568999999999999876542 233667899999
Q ss_pred EEEeeeEeC
Q 017981 193 LSIKGYIYG 201 (363)
Q Consensus 193 L~L~~c~~~ 201 (363)
|.|.+|.+.
T Consensus 107 L~L~~N~l~ 115 (192)
T 1w8a_A 107 LNLYDNQIS 115 (192)
T ss_dssp EECCSSCCC
T ss_pred EECCCCcCC
Confidence 999998743
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.48 E-value=4.2e-06 Score=74.47 Aligned_cols=83 Identities=11% Similarity=0.029 Sum_probs=50.0
Q ss_pred CCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcc-eEEEEeccC
Q 017981 259 LHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLN-RLEVEGVGA 337 (363)
Q Consensus 259 ~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~-~L~l~~~~~ 337 (363)
+++|+.+.+....-.. -....+.+|++|+.|.+... + +.+.. . .+..+.+|+ .+.+...-
T Consensus 225 ~~~L~~l~L~~n~i~~-----------I~~~aF~~~~~L~~l~l~~n-i---~~I~~--~-aF~~~~~L~~~l~l~~~l- 285 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT-----------IPDFTFAQKKYLLKIKLPHN-L---KTIGQ--R-VFSNCGRLAGTLELPASV- 285 (329)
T ss_dssp CTTCCEEECTTBCCCE-----------ECTTTTTTCTTCCEEECCTT-C---CEECT--T-TTTTCTTCCEEEEECTTC-
T ss_pred cCCCeEEECCCCCcce-----------ecHhhhhCCCCCCEEECCcc-c---ceehH--H-HhhCChhccEEEEEcccc-
Confidence 6788888775421100 02345778899999999875 3 33333 1 234666788 88886521
Q ss_pred CChHHHHHHHHhCCCCcceEEeeec
Q 017981 338 CGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 338 ~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
.. .-...+.+|++|+++++..++
T Consensus 286 -~~-I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 286 -TA-IEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp -CE-ECTTTTTTCTTEEEEEECSSC
T ss_pred -eE-EchhhhhCCccCCEEEeCCCc
Confidence 11 001346789999999986554
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.44 E-value=4.6e-05 Score=60.69 Aligned_cols=61 Identities=23% Similarity=0.116 Sum_probs=38.7
Q ss_pred CcccEEEecccccccC-C-CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCC
Q 017981 141 KTLEVLKLDMNFFIKT-P-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGT 202 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~ 202 (363)
++|++|+|+++.+... + .+..+++|++|+|.++.+..-. ...+.++++|++|+|.+|.+.+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~ 92 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKS 92 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCE
Confidence 6777777777776654 2 2446777777777777665331 2334567777777777766443
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.40 E-value=5.6e-05 Score=60.49 Aligned_cols=68 Identities=18% Similarity=0.090 Sum_probs=39.6
Q ss_pred cCCcccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCC
Q 017981 132 ELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGT 202 (363)
Q Consensus 132 ~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~ 202 (363)
.+|..+. ++|++|+|+++.+...+ .+..+++|+.|+|.++.+..-. ..++..+++|++|+|.+|.+.+
T Consensus 26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~ 95 (174)
T 2r9u_A 26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKS 95 (174)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCC
T ss_pred ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCccce
Confidence 4444332 66777777777666442 2446677777777777654421 2234566777777777665433
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.34 E-value=5.9e-06 Score=66.97 Aligned_cols=96 Identities=10% Similarity=-0.039 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHh--CCceEEEEEcC-CCcc---ccCCcccccCCcccEEEecccccccC------CCcccCcccceeeee
Q 017981 104 SRLKLWVSFATM--RNVREIEISLN-DDEC---IELPHCIYTCKTLEVLKLDMNFFIKT------PPTIFFPSAKILHVI 171 (363)
Q Consensus 104 ~~~~~wi~~~~~--~~l~~L~l~~~-~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~~------~~~~~~~~L~~L~L~ 171 (363)
..+..++..+.. +.+++|+++.+ .... ..+...+..+++|++|+|++|.+.+. ......++|++|+|+
T Consensus 22 ~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 22 TDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp CCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred cHHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence 344445544443 25666666544 3211 12333344466677777776665531 011234566777777
Q ss_pred eEEEccch---HHHHhccCCccceEEE--eeeE
Q 017981 172 LNTIDNNF---SDWLFSKCPALEDLSI--KGYI 199 (363)
Q Consensus 172 ~~~~~~~~---l~~ll~~cp~Le~L~L--~~c~ 199 (363)
++.+.+.+ +...+..+++|++|.| .+|.
T Consensus 102 ~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 102 SNFISGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred CCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 77666553 3333455666777766 5554
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.31 E-value=4.1e-05 Score=62.61 Aligned_cols=103 Identities=16% Similarity=0.122 Sum_probs=78.1
Q ss_pred hCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcc-cCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981 115 MRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTI-FFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (363)
Q Consensus 115 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (363)
..+++.|+++.+.. ..+| .+..+++|++|++++|.+...+... .+++|++|+|.++.+++ +. -+..+++|++|
T Consensus 47 l~~L~~L~ls~n~l--~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 47 LKACKHLALSTNNI--EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVL 120 (198)
T ss_dssp TTTCSEEECSEEEE--SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEE
T ss_pred CCCCCEEECCCCCC--cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEE
Confidence 46899999965543 2356 6777999999999999888655433 56999999999998865 33 36678999999
Q ss_pred EEeeeEeCCCceeE-EE-ecCCcceEEEEecCC
Q 017981 194 SIKGYIYGTDSVTL-NI-PSLTLKRLRLELEAP 224 (363)
Q Consensus 194 ~L~~c~~~~~~~~l-~i-~~~~L~~L~l~~~~~ 224 (363)
++.+|.+.+. ..+ .+ ..++|+.|++.+|..
T Consensus 121 ~l~~N~i~~~-~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 121 YMSNNKITNW-GEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EESEEECCCH-HHHHHHTTTTTCSEEEECSCHH
T ss_pred ECCCCcCCch-hHHHHHhcCCCCCEEEecCCcc
Confidence 9999986654 221 12 248999999999864
No 150
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.30 E-value=2e-05 Score=77.81 Aligned_cols=105 Identities=15% Similarity=0.075 Sum_probs=74.2
Q ss_pred CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (363)
..++.|+|+.+.. ..+|..++.+++|++|+|++|.+...| .+..+++|+.|+|+++.++. +-.-+..+++|++|.
T Consensus 224 ~~L~~L~Ls~n~l--~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQI--FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS--LPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSCC--SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS--CCSSGGGGTTCSEEE
T ss_pred CCCcEEECCCCCC--CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc--cChhhcCCCCCCEEE
Confidence 4677777766553 367777788888999999988877544 35578889999999888762 233356788899999
Q ss_pred EeeeEeCCCceeEEEecCCcceEEEEecCCc
Q 017981 195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPE 225 (363)
Q Consensus 195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~ 225 (363)
|.+|.+..+ ..---..++|+.|+|.+|...
T Consensus 300 L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 300 FFDNMVTTL-PWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CCSSCCCCC-CSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCCCCcc-ChhhhcCCCccEEeCCCCccC
Confidence 988875544 111112378888888888654
No 151
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.30 E-value=1.5e-05 Score=78.76 Aligned_cols=113 Identities=11% Similarity=-0.078 Sum_probs=79.0
Q ss_pred CCcccccCCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEec
Q 017981 133 LPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPS 211 (363)
Q Consensus 133 l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~ 211 (363)
.+..+..+++|+.|+|++|.+...+ ....+++|++|+|.++.++. +..-+..+++|++|+|.+|.+..+ ..--...
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTE--LPAEIKNLSNLRVLDLSHNRLTSL-PAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSC--CCGGGGGGTTCCEEECTTSCCSSC-CSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcc--cChhhhCCCCCCEEeCcCCcCCcc-ChhhcCC
Confidence 3455667899999999999887543 45589999999999998862 333467899999999999986543 1111124
Q ss_pred CCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCC
Q 017981 212 LTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG 252 (363)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~ 252 (363)
++|+.|.|.+|....... ....+++|++|+++++...
T Consensus 293 ~~L~~L~L~~N~l~~lp~----~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPW----EFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TTCSEEECCSSCCCCCCS----STTSCTTCCCEECTTSCCC
T ss_pred CCCCEEECCCCCCCccCh----hhhcCCCccEEeCCCCccC
Confidence 889999999997643211 1245689999999987654
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.28 E-value=0.00016 Score=57.72 Aligned_cols=84 Identities=13% Similarity=0.098 Sum_probs=64.5
Q ss_pred CCceEEEEEcCCCccccC-CcccccCCcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981 116 RNVREIEISLNDDECIEL-PHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (363)
.+++.|+++.+.. ..+ |..+..+++|++|+|++|.+...+. +..+++|++|+|.++.+..-. ...+..+++|++
T Consensus 33 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCSE
T ss_pred CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC-HHHhccccCCCE
Confidence 5788888876654 234 4456679999999999999886543 458999999999999876431 234678899999
Q ss_pred EEEeeeEeCC
Q 017981 193 LSIKGYIYGT 202 (363)
Q Consensus 193 L~L~~c~~~~ 202 (363)
|.|.+|.+..
T Consensus 110 L~L~~N~~~c 119 (174)
T 2r9u_A 110 IYLYNNPWDC 119 (174)
T ss_dssp EECCSSCBCT
T ss_pred EEeCCCCccc
Confidence 9999987543
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.23 E-value=0.00021 Score=56.85 Aligned_cols=84 Identities=15% Similarity=0.090 Sum_probs=63.7
Q ss_pred CCceEEEEEcCCCccccC-CcccccCCcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981 116 RNVREIEISLNDDECIEL-PHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (363)
..++.|++..+.. ..+ |..+..+++|++|+|++|.+...+. +..+++|++|+|.++.+..-. ...+..+++|++
T Consensus 30 ~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC-HHHhcCCCCCCE
Confidence 5788888876653 234 4456679999999999999886543 458999999999999876531 234678899999
Q ss_pred EEEeeeEeCC
Q 017981 193 LSIKGYIYGT 202 (363)
Q Consensus 193 L~L~~c~~~~ 202 (363)
|.|.+|.+..
T Consensus 107 L~L~~N~~~c 116 (170)
T 3g39_A 107 IWLLNNPWDC 116 (170)
T ss_dssp EECCSSCBCT
T ss_pred EEeCCCCCCC
Confidence 9999987543
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.15 E-value=7.6e-05 Score=66.73 Aligned_cols=91 Identities=14% Similarity=0.081 Sum_probs=59.0
Q ss_pred ccCCcccccCCcccEEEecc-cccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeE
Q 017981 131 IELPHCIYTCKTLEVLKLDM-NFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL 207 (363)
Q Consensus 131 ~~l~~~~~~~~~L~~L~L~~-~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l 207 (363)
..+|. +..+++|++|+|++ +.+...+ .+..+++|+.|+|+++.+.+- ....+.++++|++|+|.+|.+.++ ..-
T Consensus 22 ~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~-~~~ 98 (347)
T 2ifg_A 22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNALESL-SWK 98 (347)
T ss_dssp TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCCSCC-CST
T ss_pred CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCcccee-CHH
Confidence 34676 66778888888885 7766543 255788888888888876543 123456788888888888775544 111
Q ss_pred EEecCCcceEEEEecCC
Q 017981 208 NIPSLTLKRLRLELEAP 224 (363)
Q Consensus 208 ~i~~~~L~~L~l~~~~~ 224 (363)
.+...+|+.|.+.+|.+
T Consensus 99 ~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNPL 115 (347)
T ss_dssp TTCSCCCCEEECCSSCC
T ss_pred HcccCCceEEEeeCCCc
Confidence 11122388888887754
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.81 E-value=0.00059 Score=55.02 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=49.8
Q ss_pred HHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEE--EeccCCChHH---HHHHHHhCCCCcceEEee
Q 017981 286 AVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEV--EGVGACGWLS---LAHIFSRMPKLESIVFEE 360 (363)
Q Consensus 286 ~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l--~~~~~~~~~~---l~~ll~~~p~L~~L~l~~ 360 (363)
.+...+...++|+.|.++.+.+.+ +......+ .+....+|++|++ ..+.- +..+ +...++.++.|++|+++.
T Consensus 84 ~l~~~L~~n~~L~~L~L~~N~i~~-~g~~~l~~-~L~~n~~L~~L~L~~~~N~i-~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 84 ALAEMLKVNNTLKSLNVESNFISG-SGILALVE-ALQSNTSLIELRIDNQSQPL-GNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHHHHHCSSCCEEECCSSCCCH-HHHHHHHH-GGGGCSSCCEEECCCCSSCC-CHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHhCCCcCEEECcCCcCCH-HHHHHHHH-HHHhCCCceEEEecCCCCCC-CHHHHHHHHHHHHhCCCcCEEeccC
Confidence 467777788899999999887632 11111112 2335567999999 55543 5444 667788899999999987
Q ss_pred ec
Q 017981 361 VR 362 (363)
Q Consensus 361 ~~ 362 (363)
++
T Consensus 161 n~ 162 (185)
T 1io0_A 161 TQ 162 (185)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.76 E-value=0.0012 Score=60.31 Aligned_cols=166 Identities=14% Similarity=0.250 Sum_probs=87.2
Q ss_pred cccCCcccEEEecccccccC-CCcccCcccceeeeeeE--EEccchHHHHhccCCccceEEEeeeEeCCCceeEEE---e
Q 017981 137 IYTCKTLEVLKLDMNFFIKT-PPTIFFPSAKILHVILN--TIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI---P 210 (363)
Q Consensus 137 ~~~~~~L~~L~L~~~~~~~~-~~~~~~~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i---~ 210 (363)
+..|++|+.+.|..+.+... .+...+.+|+.+.|... .+. ...+.+|++|+++.+..+. ..+.. .
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~----~~aF~~~~~L~~l~l~~~l-----~~I~~~aF~ 246 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIG----SQAFLKTSQLKTIEIPENV-----STIGQEAFR 246 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEEC----TTTTTTCTTCCCEECCTTC-----CEECTTTTT
T ss_pred hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheeh----hhHhhCCCCCCEEecCCCc-----cCccccccc
Confidence 34477777777776554432 23334567777777533 111 1236678888888876532 11111 1
Q ss_pred cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC--------CceeeecCCCceEEEEeeeeceeccCCCchh
Q 017981 211 SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP--------GLYVVHELHSLTKAVVDYGIECILDYDSPED 282 (363)
Q Consensus 211 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~--------~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~ 282 (363)
..+|+++.+.+.- ... ....-..+++|+.+.+.+... ....+.++++|+.+.+.-.....
T Consensus 247 ~~~L~~i~lp~~i-~~I---~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I-------- 314 (401)
T 4fdw_A 247 ESGITTVKLPNGV-TNI---ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRIL-------- 314 (401)
T ss_dssp TCCCSEEEEETTC-CEE---CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEE--------
T ss_pred cCCccEEEeCCCc-cEE---ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEE--------
Confidence 2567777774331 100 000113567888888776532 12345667777777653211100
Q ss_pred hHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEec
Q 017981 283 VAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGV 335 (363)
Q Consensus 283 ~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~ 335 (363)
....+.+|.+|+.+.|... + ..+.. . .+..+ +|+.+.+..+
T Consensus 315 ----~~~aF~~c~~L~~l~lp~~-l---~~I~~--~-aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 315 ----GQGLLGGNRKVTQLTIPAN-V---TQINF--S-AFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ----CTTTTTTCCSCCEEEECTT-C---CEECT--T-SSSSS-CCCEEEECCS
T ss_pred ----hhhhhcCCCCccEEEECcc-c---cEEcH--H-hCCCC-CCCEEEEcCC
Confidence 2234667788888888543 2 22222 1 22344 6788777765
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.35 E-value=0.00015 Score=66.22 Aligned_cols=196 Identities=8% Similarity=0.017 Sum_probs=89.9
Q ss_pred cccEEEecccc-cccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEE
Q 017981 142 TLEVLKLDMNF-FIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLE 220 (363)
Q Consensus 142 ~L~~L~L~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~ 220 (363)
+|+++.+...- ......+.+|++|+.++|..+.++.=.-. .+. |.+|+++.+.... ..+.......|++|+++.+.
T Consensus 158 ~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~-aF~-~~~L~~l~lp~~l-~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPAS-TFV-YAGIEEVLLPVTL-KEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTT-TTT-TCCCSEEECCTTC-CEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechh-hEe-ecccCEEEeCCch-heehhhHhhCCCCCCEEecC
Confidence 45555555411 11112344566666666654322211000 011 4566666654321 00000001124567777765
Q ss_pred ecCCccccCCceEEEEeccCcceEEEeecCC--CceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcce
Q 017981 221 LEAPEEDYITKYKVIIRAPNLEQLYIRDHGP--GLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIK 298 (363)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 298 (363)
.+-.. . ...+....+|+.+.+..... ....+.++++|+.+.+....... .....-....+.+|++|+
T Consensus 235 ~~l~~-I----~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~------~~~~~I~~~aF~~c~~L~ 303 (401)
T 4fdw_A 235 ENVST-I----GQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFND------DPEAMIHPYCLEGCPKLA 303 (401)
T ss_dssp TTCCE-E----CTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCC------CTTCEECTTTTTTCTTCC
T ss_pred CCccC-c----cccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccC------CcccEECHHHhhCCccCC
Confidence 43110 0 00011124677777744321 13346677888888775432110 000000233466788888
Q ss_pred EEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981 299 SLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR 362 (363)
Q Consensus 299 ~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 362 (363)
.+.+... + +.+.. . .+..+.+|+.+.+...- ..- -...+.+| +|+++.+..+.
T Consensus 304 ~l~l~~~-i---~~I~~--~-aF~~c~~L~~l~lp~~l--~~I-~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 304 RFEIPES-I---RILGQ--G-LLGGNRKVTQLTIPANV--TQI-NFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp EECCCTT-C---CEECT--T-TTTTCCSCCEEEECTTC--CEE-CTTSSSSS-CCCEEEECCSS
T ss_pred eEEeCCc-e---EEEhh--h-hhcCCCCccEEEECccc--cEE-cHHhCCCC-CCCEEEEcCCC
Confidence 8888743 3 33332 1 23356678888884321 100 01235678 89999887653
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.44 E-value=0.0032 Score=53.67 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=43.0
Q ss_pred CCceEEEEEcCCCcc-ccCCcccccCCcccEEEecccccccCCCcccCc--ccceeeeeeEEEccc------hHHHHhcc
Q 017981 116 RNVREIEISLNDDEC-IELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFP--SAKILHVILNTIDNN------FSDWLFSK 186 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~~------~l~~ll~~ 186 (363)
+.++.|+|+.+.... ..++..+..+++|++|+|++|.+.+......+. +|+.|+|.++.+.+. -...++..
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~ 249 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER 249 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence 466666665544321 134444455677777777776666432222333 667777766665431 12345566
Q ss_pred CCccceEE
Q 017981 187 CPALEDLS 194 (363)
Q Consensus 187 cp~Le~L~ 194 (363)
+|+|+.|+
T Consensus 250 ~P~L~~LD 257 (267)
T 3rw6_A 250 FPKLLRLD 257 (267)
T ss_dssp CTTCCEES
T ss_pred CcccCeEC
Confidence 67766653
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.10 E-value=0.0079 Score=53.41 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=52.5
Q ss_pred CceEEEEEc-CCCccccCC-cccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981 117 NVREIEISL-NDDECIELP-HCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (363)
Q Consensus 117 ~l~~L~l~~-~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (363)
++++|+|+. ... ..++ ..+..+++|++|+|++|.+...+ .+..+++|+.|+|+++.+..-. ..++...+ |+.
T Consensus 32 ~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~-L~~ 107 (347)
T 2ifg_A 32 NLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS-WKTVQGLS-LQE 107 (347)
T ss_dssp CCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC-STTTCSCC-CCE
T ss_pred CeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC-HHHcccCC-ceE
Confidence 677888764 442 2444 34556888888888888777543 2457888888888888775431 12233344 888
Q ss_pred EEEeeeEe
Q 017981 193 LSIKGYIY 200 (363)
Q Consensus 193 L~L~~c~~ 200 (363)
|.|.+|.+
T Consensus 108 l~l~~N~~ 115 (347)
T 2ifg_A 108 LVLSGNPL 115 (347)
T ss_dssp EECCSSCC
T ss_pred EEeeCCCc
Confidence 88887764
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.10 E-value=0.013 Score=49.82 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=29.7
Q ss_pred cCcccceeeeeeEEEccc-hHHHHhccCCccceEEEeeeEeCCCceeEE-EecCCcceEEEEecCC
Q 017981 161 FFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGYIYGTDSVTLN-IPSLTLKRLRLELEAP 224 (363)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~-i~~~~L~~L~l~~~~~ 224 (363)
.+|+|++|+|+++.+.+- ++...+..+|+|+.|.|.+|.+.+. ..+. +...+|++|.+.+|..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcC
Confidence 355555555555555442 3334444556666666655554332 1110 0111566666665543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.55 E-value=0.0042 Score=50.19 Aligned_cols=96 Identities=11% Similarity=0.102 Sum_probs=44.6
Q ss_pred ChhhHHHHHHHHHhC--CceEEEEEcC-CCc---cccCCcccccCCcccEEEecccccccC--CC----cccCcccceee
Q 017981 102 DSSRLKLWVSFATMR--NVREIEISLN-DDE---CIELPHCIYTCKTLEVLKLDMNFFIKT--PP----TIFFPSAKILH 169 (363)
Q Consensus 102 ~~~~~~~wi~~~~~~--~l~~L~l~~~-~~~---~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~----~~~~~~L~~L~ 169 (363)
+...++..+...... .+++|.++.. ... ...+...+..-.+|++|+|++|.+.+. .. ....+.|++|+
T Consensus 25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 25 NDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN 104 (197)
T ss_dssp --CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred CCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEe
Confidence 334555555554432 5666666432 211 112222333445666666666665532 00 11345566666
Q ss_pred eeeEEEccchHHH---HhccCCccceEEEee
Q 017981 170 VILNTIDNNFSDW---LFSKCPALEDLSIKG 197 (363)
Q Consensus 170 L~~~~~~~~~l~~---ll~~cp~Le~L~L~~ 197 (363)
|.++.+.+.+... .+.....|++|.|.+
T Consensus 105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 105 VESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred cCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 6666665553332 233444555555554
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.37 E-value=0.0036 Score=56.88 Aligned_cols=54 Identities=13% Similarity=0.071 Sum_probs=28.5
Q ss_pred CCceEEEEEcCCCccccCCc-ccccCCcccEEEecccc-cccCCCcccCcccceeeeee
Q 017981 116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNF-FIKTPPTIFFPSAKILHVIL 172 (363)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~L~~L~L~~ 172 (363)
.+++.+.+.... ..++. .+..|.+|+.+.+..+. ......+..++.|+.+.+..
T Consensus 162 ~~L~~i~l~~~~---~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 162 ESLEYVSLPDSM---ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp TTCCEEECCTTC---CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCT
T ss_pred CCCcEEecCCcc---ceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCC
Confidence 356766663221 23333 33458888888886541 11123344566666665543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.65 E-value=0.081 Score=42.63 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEecCCCChhhHHHHHHHHHh--CCceEEEEEcCCCc---cccCCcccccCCcccEEEe
Q 017981 74 RFENFVHRVLLSASGNINKFSLRCCGLVDSSRLKLWVSFATM--RNVREIEISLNDDE---CIELPHCIYTCKTLEVLKL 148 (363)
Q Consensus 74 ~~~~~i~~~l~~~~~~l~~l~l~~~~~~~~~~~~~wi~~~~~--~~l~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~L 148 (363)
.+.+.+.+++... ..++.+.+..........+... ..+.. ..+++|.|+.+... ...+...+...++|++|+|
T Consensus 28 ~v~~~l~~ll~~n-~~L~~L~L~~nn~igd~ga~~l-a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L 105 (197)
T 1pgv_A 28 DVESCINRLREDD-TDLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV 105 (197)
T ss_dssp CHHHHHHHHHTTC-SSCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred CHHHHHHHHHhcC-CCccEEECCCCCCCCHHHHHHH-HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence 4445565555433 4677787753212333433333 23333 37999999776543 2344455556789999999
Q ss_pred cccccccC------CCcccCcccceeeeeeE---EEccc---hHHHHhccCCccceEEEeeeE
Q 017981 149 DMNFFIKT------PPTIFFPSAKILHVILN---TIDNN---FSDWLFSKCPALEDLSIKGYI 199 (363)
Q Consensus 149 ~~~~~~~~------~~~~~~~~L~~L~L~~~---~~~~~---~l~~ll~~cp~Le~L~L~~c~ 199 (363)
++|.+.+. ........|++|+|.++ .+.+. .+...+...+.|++|.+..+.
T Consensus 106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 99988742 12335677999999865 34443 567778899999999998654
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=87.83 E-value=1.1 Score=40.11 Aligned_cols=34 Identities=9% Similarity=0.098 Sum_probs=16.1
Q ss_pred ccCCcccEEEecccccc-cCCCcccCcccceeeee
Q 017981 138 YTCKTLEVLKLDMNFFI-KTPPTIFFPSAKILHVI 171 (363)
Q Consensus 138 ~~~~~L~~L~L~~~~~~-~~~~~~~~~~L~~L~L~ 171 (363)
..|.+|+.+.+...... ....+..+.+|+.+.+.
T Consensus 134 ~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 134 HHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred hhhcccccccccceeeeecccceeccccccccccc
Confidence 44777777777532111 11223344555555443
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=72.44 E-value=1.8 Score=38.73 Aligned_cols=100 Identities=12% Similarity=0.154 Sum_probs=60.3
Q ss_pred cccCCcccEEEecccccc-cCCCcccCcccceeeeeeE--EEccchHHHHhccCCccceEEEeeeEeCCCceeE----EE
Q 017981 137 IYTCKTLEVLKLDMNFFI-KTPPTIFFPSAKILHVILN--TIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL----NI 209 (363)
Q Consensus 137 ~~~~~~L~~L~L~~~~~~-~~~~~~~~~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l----~i 209 (363)
+..|.+|+++.+...... +...+.++++|+.+.+... .+.+ ..+.+|.+|+++.|-.. + ..+ ..
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~~----v-~~I~~~aF~ 331 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPE----SVFAGCISLKSIDIPEG----I-TQILDDAFA 331 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCEEECCTT----C-CEECTTTTT
T ss_pred eeecccccEEecccccceecCcccccccccccccCCCcccccCc----eeecCCCCcCEEEeCCc----c-cEehHhHhh
Confidence 445899999988654322 2244567888988888642 1222 33778999999988542 1 112 12
Q ss_pred ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeec
Q 017981 210 PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDH 249 (363)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 249 (363)
.|.+|+++.+-..- ... + ...-..|++|+.+.+.+.
T Consensus 332 ~C~~L~~i~ip~sv-~~I--~-~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 332 GCEQLERIAIPSSV-TKI--P-ESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCTTCCEEEECTTC-CBC--C-GGGGTTCTTCCEEEESSC
T ss_pred CCCCCCEEEECccc-CEE--h-HhHhhCCCCCCEEEECCc
Confidence 35788888885431 100 0 011145788999988875
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=69.23 E-value=2.9 Score=30.88 Aligned_cols=38 Identities=18% Similarity=0.097 Sum_probs=27.9
Q ss_pred CcccEEEecccccccCC--CcccCcccceeeeeeEEEccc
Q 017981 141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNN 178 (363)
Q Consensus 141 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~ 178 (363)
++|++|+|++|.+...+ .+..+++|+.|+|.++.+.-+
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 46888888888887543 234678888888888877644
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=61.25 E-value=6.1 Score=35.23 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=52.1
Q ss_pred ccccCCcccEEEeccc-ccccCCCcccCcccceeeeeeE--EEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecC
Q 017981 136 CIYTCKTLEVLKLDMN-FFIKTPPTIFFPSAKILHVILN--TIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSL 212 (363)
Q Consensus 136 ~~~~~~~L~~L~L~~~-~~~~~~~~~~~~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~ 212 (363)
.+..|.+|+.+.+... ...+...+.+|.+|++++|... .+.+ ..+.+|.+|+++.+-.+. ..+.......|+
T Consensus 292 ~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~c~~L~~i~lp~~l-~~I~~~aF~~C~ 366 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIGK----RSFRGCTSLSNINFPLSL-RKIGANAFQGCI 366 (394)
T ss_dssp TTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTTCCEECT----TTTTTCTTCCEECCCTTC-CEECTTTBTTCT
T ss_pred cccccccccccccccccceechhhhcCCCCCCEEEeCCcccEEhH----HhccCCCCCCEEEECccc-cEehHHHhhCCC
Confidence 3456999999999754 2222345668999999999643 1222 237789999999886531 111011122468
Q ss_pred CcceEEEEec
Q 017981 213 TLKRLRLELE 222 (363)
Q Consensus 213 ~L~~L~l~~~ 222 (363)
+|+++.+...
T Consensus 367 ~L~~i~lp~~ 376 (394)
T 4fs7_A 367 NLKKVELPKR 376 (394)
T ss_dssp TCCEEEEEGG
T ss_pred CCCEEEECCC
Confidence 9999998765
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=50.63 E-value=7.1 Score=34.48 Aligned_cols=79 Identities=11% Similarity=0.087 Sum_probs=46.6
Q ss_pred cccCCcccEEEecccccc-cCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEE----Eec
Q 017981 137 IYTCKTLEVLKLDMNFFI-KTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLN----IPS 211 (363)
Q Consensus 137 ~~~~~~L~~L~L~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~----i~~ 211 (363)
+..|.+|+.+.+....-. ....+.+|++|+.+.+....+..=+ ...+.+|.+|+++.|-.. + ..+. ..|
T Consensus 259 F~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~-~~aF~~c~~L~~i~lp~~----l-~~I~~~aF~~C 332 (379)
T 4h09_A 259 LQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLE-PRVFMDCVKLSSVTLPTA----L-KTIQVYAFKNC 332 (379)
T ss_dssp TTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEEC-TTTTTTCTTCCEEECCTT----C-CEECTTTTTTC
T ss_pred cceeehhccccccccceeccccccccccccccccccccccceeh-hhhhcCCCCCCEEEcCcc----c-cEEHHHHhhCC
Confidence 345888998888654211 1234567889999888653221100 123678999999888542 1 1221 134
Q ss_pred CCcceEEEEe
Q 017981 212 LTLKRLRLEL 221 (363)
Q Consensus 212 ~~L~~L~l~~ 221 (363)
.+|+++.+..
T Consensus 333 ~~L~~i~ip~ 342 (379)
T 4h09_A 333 KALSTISYPK 342 (379)
T ss_dssp TTCCCCCCCT
T ss_pred CCCCEEEECC
Confidence 6788777643
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=47.19 E-value=7 Score=28.72 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=34.5
Q ss_pred EEEecccccc--cCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEe
Q 017981 145 VLKLDMNFFI--KTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIY 200 (363)
Q Consensus 145 ~L~L~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~ 200 (363)
.++-++..+. ..|. .-.++|++|+|+++.++.-. ...+...++|+.|.|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCe
Confidence 4444554444 3332 12347999999999876432 23466788999999988764
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=44.19 E-value=10 Score=33.43 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=52.5
Q ss_pred cccCCcccEEEecccccc-cCCCcccCcccceeeeeeE--EEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCC
Q 017981 137 IYTCKTLEVLKLDMNFFI-KTPPTIFFPSAKILHVILN--TIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLT 213 (363)
Q Consensus 137 ~~~~~~L~~L~L~~~~~~-~~~~~~~~~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~ 213 (363)
+..|.+|+.+.+...... ....+.++.+|+.+.+... .+. ...+.+|.+|+.+.+.... ..+.......|++
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~I~----~~aF~~~~~l~~i~l~~~i-~~i~~~aF~~c~~ 287 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIG----SFLLQNCTALKTLNFYAKV-KTVPYLLCSGCSN 287 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCEEC----TTTTTTCTTCCEEEECCCC-SEECTTTTTTCTT
T ss_pred cccccccceeeeccceeEEccccccCCccceEEEcCCCccEeC----ccccceeehhccccccccc-eeccccccccccc
Confidence 344777887777543221 1233456777777777543 111 1235678888887775421 0000001123467
Q ss_pred cceEEEEecCCccccCCceEEEEeccCcceEEEee
Q 017981 214 LKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRD 248 (363)
Q Consensus 214 L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 248 (363)
|+++.+.++........ .-..|.+|+.+.+..
T Consensus 288 L~~i~l~~~~i~~I~~~---aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPR---VFMDCVKLSSVTLPT 319 (379)
T ss_dssp CCEEEECCTTCCEECTT---TTTTCTTCCEEECCT
T ss_pred cccccccccccceehhh---hhcCCCCCCEEEcCc
Confidence 77777765532211000 013457777777643
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.82 E-value=38 Score=23.38 Aligned_cols=12 Identities=0% Similarity=0.050 Sum_probs=6.6
Q ss_pred cCCcccEEEecc
Q 017981 139 TCKTLEVLKLDM 150 (363)
Q Consensus 139 ~~~~L~~L~L~~ 150 (363)
+|.+|+++.|-.
T Consensus 18 ~c~~L~~i~iP~ 29 (100)
T 2lz0_A 18 GNTVIREITVQP 29 (100)
T ss_dssp TCTTCCCEEECT
T ss_pred CCCCCcEEEcCC
Confidence 356666655543
No 172
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=29.26 E-value=49 Score=19.11 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=9.1
Q ss_pred cccCCCChHHHHHHhc
Q 017981 9 DRISCLPNAILCHILS 24 (363)
Q Consensus 9 d~i~~LPd~il~~Ils 24 (363)
+-|+.||.||=.+|++
T Consensus 19 eVF~~LP~dIQ~Ells 34 (48)
T 2kwv_A 19 EVFKQLPADIQEEILS 34 (48)
T ss_dssp GGTTTSCHHHHHHHTT
T ss_pred HHHHHCcHHHHHHHHh
Confidence 3456666666555554
Done!