BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017983
         (363 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis At 2.1 A Resolution
 pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis At 2.1 A Resolution
 pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis
 pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis
          Length = 239

 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 4   APKDEHEAQIQFALERGIPAILSVIGT-QKLTFPDDAYDLIHCARCRVHWDAQGGKPLLE 62
           A K+  E    FA E+G+  +    GT + L FPDD++D+I C R   H  +   K + E
Sbjct: 51  ATKEXVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITC-RYAAHHFSDVRKAVRE 109

Query: 63  LNRILRPGGFFI 74
           + R+L+  G F+
Sbjct: 110 VARVLKQDGRFL 121


>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
           In Complex With S-Adensyl-L-Methionine (Sam)
 pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
           In Complex With S-Adensyl-L-Homocystein (Sah)
          Length = 374

 Score = 31.6 bits (70), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 5/112 (4%)

Query: 215 AINWSSVRNVMDMNASYGGFAAAL-IDQPLWVMNVVPIDAPDTLS--IIFDRGLIG-MYH 270
           A +WS+VR+V+D+    GG  AA+ +  P     +V +  P   +     D GL   +  
Sbjct: 177 AYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTV 236

Query: 271 DWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 322
              + F   P T D++  SF+L + +   D   +     R L PGG +LV D
Sbjct: 237 AEGDFFKPLPVTADVVLLSFVLLNWSDE-DALTILRGCVRALEPGGRLLVLD 287


>pdb|4F7D|A Chain A, Crystal Structure Of Ferredoxin-Nadp Reductase From
           Burkholderia Thailandensis E264
 pdb|4F7D|B Chain B, Crystal Structure Of Ferredoxin-Nadp Reductase From
           Burkholderia Thailandensis E264
 pdb|4FK8|A Chain A, Crystal Structure Of Ferredoxin-Nadp Reductase From
           Burkholderia Thailandensis E264 With Bound Fad
 pdb|4FK8|B Chain B, Crystal Structure Of Ferredoxin-Nadp Reductase From
           Burkholderia Thailandensis E264 With Bound Fad
          Length = 271

 Score = 31.6 bits (70), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 274 ESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINK 329
           E F    R  DL+ S  L +D+    D+   + E DR++  G   +++DT E++ K
Sbjct: 198 EEFENEGRITDLIASGKLFTDL----DMPPFSPEQDRVMLCGSTAMLKDTTELLKK 249


>pdb|4DAG|A Chain A, Structure Of The Human Metapneumovirus Fusion Protein With
           Neutralizing Antibody Identifies A Pneumovirus Antigenic
           Site
          Length = 415

 Score = 28.1 bits (61), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 102 CWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENT 136
           C+K V+ S+ SNR+G +I Q P   S   N++ +T
Sbjct: 367 CYKGVSCSIGSNRVG-IIKQLPKGCSYITNQDADT 400


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,734,231
Number of Sequences: 62578
Number of extensions: 495664
Number of successful extensions: 1073
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1070
Number of HSP's gapped (non-prelim): 8
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)