Query 017983
Match_columns 363
No_of_seqs 355 out of 1654
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:08:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 6E-106 1E-110 810.3 22.6 347 1-353 143-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 3.4E-40 7.4E-45 333.5 9.5 213 125-357 17-264 (506)
3 PLN02336 phosphoethanolamine N 99.8 1.3E-20 2.7E-25 193.2 12.1 273 6-322 65-369 (475)
4 COG2226 UbiE Methylase involve 99.8 9.9E-19 2.1E-23 165.1 10.5 118 197-325 34-159 (238)
5 PF01209 Ubie_methyltran: ubiE 99.7 9.5E-18 2.1E-22 158.1 8.1 118 197-324 30-155 (233)
6 PF08241 Methyltransf_11: Meth 99.6 1.8E-16 3.9E-21 124.8 6.1 89 225-320 1-95 (95)
7 PLN02233 ubiquinone biosynthes 99.6 1.4E-15 3.1E-20 145.2 9.9 98 221-323 74-183 (261)
8 KOG1540 Ubiquinone biosynthesi 99.5 9.6E-14 2.1E-18 131.4 10.8 121 217-341 97-234 (296)
9 PRK05785 hypothetical protein; 99.5 1.1E-13 2.3E-18 129.7 9.9 107 198-316 33-141 (226)
10 PF13489 Methyltransf_23: Meth 99.4 1.4E-13 3E-18 119.0 6.7 94 220-324 22-117 (161)
11 PLN02244 tocopherol O-methyltr 99.4 3E-13 6.6E-18 133.9 9.1 96 220-322 118-223 (340)
12 PLN02396 hexaprenyldihydroxybe 99.4 2.6E-13 5.6E-18 133.8 8.0 96 221-323 132-236 (322)
13 TIGR02752 MenG_heptapren 2-hep 99.4 7.5E-13 1.6E-17 122.7 10.1 116 198-323 29-152 (231)
14 PRK10258 biotin biosynthesis p 99.4 8.7E-13 1.9E-17 124.2 10.6 96 220-322 42-140 (251)
15 PRK14103 trans-aconitate 2-met 99.4 5.6E-13 1.2E-17 126.2 8.5 97 220-322 29-126 (255)
16 PTZ00098 phosphoethanolamine N 99.4 6.2E-13 1.3E-17 127.2 8.6 105 213-323 47-157 (263)
17 PRK11207 tellurite resistance 99.4 2.2E-12 4.8E-17 118.1 10.2 131 221-359 31-183 (197)
18 PF12847 Methyltransf_18: Meth 99.4 1.4E-12 3E-17 106.9 7.2 98 222-322 3-111 (112)
19 TIGR00477 tehB tellurite resis 99.4 4.6E-12 1E-16 115.9 10.6 130 221-358 31-181 (195)
20 PRK11036 putative S-adenosyl-L 99.3 2.2E-12 4.8E-17 122.2 8.6 96 221-322 45-149 (255)
21 TIGR00452 methyltransferase, p 99.3 7.3E-12 1.6E-16 123.1 10.9 96 221-322 122-225 (314)
22 PRK00107 gidB 16S rRNA methylt 99.3 2.9E-11 6.2E-16 110.6 13.4 133 200-344 27-167 (187)
23 PF08242 Methyltransf_12: Meth 99.3 1.1E-12 2.5E-17 105.9 2.5 90 225-318 1-99 (99)
24 PRK15068 tRNA mo(5)U34 methylt 99.3 1.1E-11 2.4E-16 122.1 9.9 96 221-322 123-226 (322)
25 COG2226 UbiE Methylase involve 99.3 2.2E-12 4.8E-17 122.1 4.6 70 6-76 81-155 (238)
26 PRK01683 trans-aconitate 2-met 99.3 1.6E-11 3.4E-16 116.0 10.2 98 220-322 31-130 (258)
27 smart00138 MeTrc Methyltransfe 99.3 1.5E-11 3.2E-16 118.0 9.9 130 192-325 70-245 (264)
28 PF02353 CMAS: Mycolic acid cy 99.3 8.3E-12 1.8E-16 120.5 8.2 102 210-321 54-165 (273)
29 PF13847 Methyltransf_31: Meth 99.3 7.7E-12 1.7E-16 109.2 6.9 99 221-324 4-112 (152)
30 PRK11873 arsM arsenite S-adeno 99.3 1.6E-11 3.4E-16 117.1 8.8 98 221-323 78-184 (272)
31 PLN02490 MPBQ/MSBQ methyltrans 99.3 1.7E-11 3.6E-16 121.8 9.3 116 221-341 114-251 (340)
32 smart00828 PKS_MT Methyltransf 99.3 1.3E-11 2.8E-16 113.9 7.8 97 222-323 1-105 (224)
33 PF08241 Methyltransf_11: Meth 99.2 3.2E-12 6.9E-17 100.5 2.9 70 5-75 24-95 (95)
34 PRK08317 hypothetical protein; 99.2 2.4E-11 5.3E-16 111.2 9.2 99 220-322 19-124 (241)
35 COG2227 UbiG 2-polyprenyl-3-me 99.2 9.3E-12 2E-16 117.2 6.2 99 221-325 60-164 (243)
36 PRK15451 tRNA cmo(5)U34 methyl 99.2 1.2E-11 2.5E-16 117.1 6.9 100 221-323 57-165 (247)
37 TIGR02072 BioC biotin biosynth 99.2 3.1E-11 6.8E-16 110.8 9.6 98 221-323 35-136 (240)
38 TIGR00740 methyltransferase, p 99.2 1.6E-11 3.4E-16 115.1 7.6 100 221-323 54-162 (239)
39 PF13649 Methyltransf_25: Meth 99.2 3.5E-12 7.6E-17 103.9 2.2 91 224-316 1-101 (101)
40 PLN02336 phosphoethanolamine N 99.2 3.2E-11 7E-16 123.8 9.1 98 221-322 38-142 (475)
41 PRK11088 rrmA 23S rRNA methylt 99.2 3.9E-11 8.4E-16 115.0 8.2 91 221-323 86-182 (272)
42 TIGR03587 Pse_Me-ase pseudamin 99.2 4.2E-11 9.1E-16 110.7 8.1 96 221-322 44-142 (204)
43 PRK06202 hypothetical protein; 99.2 5.8E-11 1.2E-15 110.8 9.1 100 219-323 59-167 (232)
44 PRK12335 tellurite resistance 99.2 6.5E-11 1.4E-15 114.4 8.4 94 222-321 122-222 (287)
45 PRK11705 cyclopropane fatty ac 99.2 8.4E-11 1.8E-15 118.5 9.2 100 213-322 162-267 (383)
46 PRK06922 hypothetical protein; 99.1 5E-11 1.1E-15 126.2 7.1 101 221-323 419-538 (677)
47 PF07021 MetW: Methionine bios 99.1 7.9E-11 1.7E-15 107.9 7.3 90 222-321 15-108 (193)
48 PRK00121 trmB tRNA (guanine-N( 99.1 1.4E-10 2.9E-15 106.8 8.8 123 221-344 41-179 (202)
49 TIGR00138 gidB 16S rRNA methyl 99.1 1.2E-10 2.6E-15 105.7 8.1 109 221-338 43-158 (181)
50 TIGR00537 hemK_rel_arch HemK-r 99.1 8.6E-10 1.9E-14 99.0 13.2 117 222-344 21-163 (179)
51 PF05401 NodS: Nodulation prot 99.1 1.2E-10 2.7E-15 107.0 7.4 103 215-324 38-148 (201)
52 PF01209 Ubie_methyltran: ubiE 99.1 3.5E-11 7.6E-16 113.6 3.5 70 6-76 78-152 (233)
53 KOG1270 Methyltransferases [Co 99.1 1E-10 2.3E-15 111.3 6.4 96 221-325 90-198 (282)
54 PRK04266 fibrillarin; Provisio 99.1 1.7E-09 3.7E-14 101.7 13.0 99 214-320 68-174 (226)
55 PRK08287 cobalt-precorrin-6Y C 99.1 1.3E-09 2.9E-14 98.4 11.6 112 221-341 32-151 (187)
56 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 5.9E-10 1.3E-14 101.6 9.1 100 220-323 39-144 (223)
57 PRK00216 ubiE ubiquinone/menaq 99.0 1.4E-09 3E-14 100.1 10.7 98 221-322 52-158 (239)
58 TIGR02469 CbiT precorrin-6Y C5 99.0 1.6E-09 3.4E-14 89.7 9.8 94 221-321 20-121 (124)
59 TIGR00406 prmA ribosomal prote 99.0 1.7E-09 3.7E-14 104.9 11.5 136 194-342 137-279 (288)
60 PLN02232 ubiquinone biosynthes 99.0 2.7E-10 5.7E-15 101.2 5.4 71 7-78 4-82 (160)
61 PRK11188 rrmJ 23S rRNA methylt 99.0 7.8E-10 1.7E-14 102.6 8.3 99 221-323 52-166 (209)
62 COG4976 Predicted methyltransf 99.0 8.9E-11 1.9E-15 110.0 1.9 146 193-344 89-263 (287)
63 PRK00517 prmA ribosomal protei 99.0 1.3E-09 2.8E-14 103.4 9.9 114 221-344 120-236 (250)
64 TIGR02021 BchM-ChlM magnesium 99.0 2.3E-09 5E-14 99.1 11.2 97 220-323 55-159 (219)
65 PRK00377 cbiT cobalt-precorrin 99.0 4E-09 8.7E-14 96.4 12.5 143 193-343 13-167 (198)
66 TIGR02081 metW methionine bios 99.0 9.7E-10 2.1E-14 100.0 8.0 88 222-315 15-105 (194)
67 PLN02233 ubiquinone biosynthes 99.0 1.8E-09 4E-14 103.2 9.8 71 6-77 104-182 (261)
68 TIGR00091 tRNA (guanine-N(7)-) 99.0 1.7E-09 3.7E-14 98.8 8.6 120 221-341 17-153 (194)
69 TIGR02716 C20_methyl_CrtF C-20 99.0 1.4E-09 3.1E-14 105.7 8.5 99 220-323 149-255 (306)
70 TIGR00438 rrmJ cell division p 99.0 1.7E-09 3.6E-14 98.0 8.4 98 221-321 33-145 (188)
71 PF03848 TehB: Tellurite resis 99.0 2.1E-09 4.5E-14 99.0 8.8 127 221-353 31-176 (192)
72 COG2230 Cfa Cyclopropane fatty 99.0 2.3E-09 5E-14 103.8 9.3 100 212-321 66-175 (283)
73 PRK01544 bifunctional N5-gluta 98.9 9.1E-08 2E-12 99.9 20.5 120 220-340 347-482 (506)
74 PRK07580 Mg-protoporphyrin IX 98.9 5.9E-09 1.3E-13 96.2 9.5 94 221-322 64-166 (230)
75 KOG4300 Predicted methyltransf 98.9 3.3E-09 7.1E-14 98.2 7.7 98 222-325 78-185 (252)
76 TIGR01983 UbiG ubiquinone bios 98.9 5.8E-09 1.2E-13 96.0 8.9 97 221-323 46-150 (224)
77 PRK13944 protein-L-isoaspartat 98.9 5E-09 1.1E-13 96.6 8.2 93 221-322 73-173 (205)
78 PTZ00146 fibrillarin; Provisio 98.9 2.3E-08 4.9E-13 97.5 12.9 101 214-321 128-236 (293)
79 PLN02232 ubiquinone biosynthes 98.9 2.9E-09 6.3E-14 94.6 6.0 71 250-324 2-83 (160)
80 KOG1540 Ubiquinone biosynthesi 98.9 2.1E-09 4.5E-14 102.2 5.3 69 7-76 137-213 (296)
81 PRK05134 bifunctional 3-demeth 98.9 5.8E-09 1.3E-13 96.9 7.9 98 220-323 48-152 (233)
82 PRK14968 putative methyltransf 98.9 3E-08 6.5E-13 88.2 11.9 117 221-343 24-170 (188)
83 TIGR03840 TMPT_Se_Te thiopurin 98.8 1.3E-08 2.9E-13 94.9 9.5 94 222-321 36-151 (213)
84 PRK13255 thiopurine S-methyltr 98.8 1.4E-08 3.1E-13 95.0 9.7 95 222-320 39-153 (218)
85 PRK10258 biotin biosynthesis p 98.8 7.2E-09 1.6E-13 97.6 6.9 84 6-91 70-153 (251)
86 KOG1541 Predicted protein carb 98.8 1.3E-08 2.7E-13 95.2 7.9 119 213-334 43-175 (270)
87 PRK14967 putative methyltransf 98.8 4.4E-08 9.4E-13 91.2 11.5 116 222-342 38-180 (223)
88 cd02440 AdoMet_MTases S-adenos 98.8 2.1E-08 4.6E-13 77.7 7.9 95 223-321 1-103 (107)
89 KOG3010 Methyltransferase [Gen 98.8 6.3E-09 1.4E-13 98.2 5.7 113 221-340 34-158 (261)
90 PF08003 Methyltransf_9: Prote 98.8 2E-08 4.2E-13 98.0 9.3 111 198-321 100-218 (315)
91 COG4106 Tam Trans-aconitate me 98.8 2.6E-08 5.6E-13 92.9 9.3 133 216-359 26-192 (257)
92 TIGR00080 pimt protein-L-isoas 98.8 2.7E-08 5.8E-13 92.1 9.2 97 213-321 72-176 (215)
93 PRK14121 tRNA (guanine-N(7)-)- 98.8 2.8E-08 6.1E-13 100.3 9.9 114 221-336 123-250 (390)
94 PRK15001 SAM-dependent 23S rib 98.7 4.8E-08 1E-12 98.5 10.6 109 222-333 230-353 (378)
95 PF05175 MTS: Methyltransferas 98.7 9.7E-08 2.1E-12 85.4 11.5 97 221-321 32-139 (170)
96 TIGR03438 probable methyltrans 98.7 2E-08 4.3E-13 98.0 7.4 99 221-321 64-176 (301)
97 PRK09328 N5-glutamine S-adenos 98.7 1.1E-07 2.4E-12 90.3 11.6 129 221-353 109-275 (275)
98 TIGR03534 RF_mod_PrmC protein- 98.7 6.3E-08 1.4E-12 90.4 9.2 116 222-340 89-235 (251)
99 PRK09489 rsmC 16S ribosomal RN 98.7 9.3E-08 2E-12 95.2 10.9 97 222-322 198-303 (342)
100 PLN02244 tocopherol O-methyltr 98.7 2E-08 4.4E-13 99.6 6.1 71 7-78 148-224 (340)
101 KOG2361 Predicted methyltransf 98.7 5E-08 1.1E-12 92.2 8.2 126 193-323 48-184 (264)
102 PRK13942 protein-L-isoaspartat 98.7 4.8E-08 1E-12 90.6 7.9 98 213-322 71-176 (212)
103 TIGR00536 hemK_fam HemK family 98.7 1.6E-07 3.5E-12 90.8 11.8 128 222-353 116-282 (284)
104 COG2264 PrmA Ribosomal protein 98.7 1.9E-07 4.2E-12 91.2 11.7 139 194-344 140-286 (300)
105 TIGR01177 conserved hypothetic 98.7 7.8E-08 1.7E-12 94.8 8.9 113 221-339 183-309 (329)
106 PRK07402 precorrin-6B methylas 98.6 2.2E-07 4.8E-12 84.6 10.8 111 221-339 41-160 (196)
107 PLN03075 nicotianamine synthas 98.6 1.1E-07 2.4E-12 92.8 9.3 132 220-355 123-276 (296)
108 PRK14966 unknown domain/N5-glu 98.6 3.3E-07 7.2E-12 93.3 12.8 131 222-353 253-418 (423)
109 PF05148 Methyltransf_8: Hypot 98.6 5.8E-08 1.2E-12 90.3 6.4 106 221-344 73-183 (219)
110 PF06325 PrmA: Ribosomal prote 98.6 1.5E-07 3.2E-12 92.1 9.5 146 194-354 139-295 (295)
111 COG4123 Predicted O-methyltran 98.6 2.2E-07 4.7E-12 88.6 10.0 122 221-343 45-191 (248)
112 TIGR03533 L3_gln_methyl protei 98.6 2.8E-07 6E-12 89.4 10.4 115 221-339 122-267 (284)
113 PLN02585 magnesium protoporphy 98.6 1.8E-07 3.9E-12 92.2 9.0 94 221-319 145-247 (315)
114 PRK00312 pcm protein-L-isoaspa 98.6 2.6E-07 5.7E-12 85.0 9.5 89 221-323 79-176 (212)
115 PRK11805 N5-glutamine S-adenos 98.5 5E-07 1.1E-11 88.7 11.1 112 222-337 135-277 (307)
116 PF13659 Methyltransf_26: Meth 98.5 7.5E-08 1.6E-12 79.5 4.4 98 222-321 2-114 (117)
117 PTZ00098 phosphoethanolamine N 98.5 6.7E-08 1.5E-12 92.6 4.6 73 6-78 81-157 (263)
118 PF00891 Methyltransf_2: O-met 98.5 1.8E-07 4E-12 87.6 6.2 99 217-323 97-200 (241)
119 PF03291 Pox_MCEL: mRNA cappin 98.5 2.3E-07 5E-12 92.1 7.2 120 200-323 42-187 (331)
120 PRK05785 hypothetical protein; 98.5 1.1E-07 2.4E-12 89.2 4.7 69 6-78 80-149 (226)
121 TIGR00563 rsmB ribosomal RNA s 98.5 8.2E-07 1.8E-11 90.7 10.9 102 220-322 238-368 (426)
122 PRK11088 rrmA 23S rRNA methylt 98.5 2.6E-07 5.6E-12 88.6 6.9 66 6-79 118-183 (272)
123 PRK04457 spermidine synthase; 98.4 1.5E-06 3.2E-11 83.5 11.0 100 220-321 66-176 (262)
124 TIGR03704 PrmC_rel_meth putati 98.4 1.1E-06 2.4E-11 83.7 10.0 121 222-344 88-238 (251)
125 PLN02396 hexaprenyldihydroxybe 98.4 1.3E-07 2.7E-12 93.6 3.4 72 6-78 159-236 (322)
126 PRK14103 trans-aconitate 2-met 98.4 1.9E-07 4.2E-12 88.4 4.4 69 6-78 59-127 (255)
127 PRK01544 bifunctional N5-gluta 98.4 1E-06 2.2E-11 92.1 10.1 116 221-341 139-288 (506)
128 PRK00811 spermidine synthase; 98.4 6.1E-07 1.3E-11 87.0 7.7 101 220-321 76-190 (283)
129 PRK13943 protein-L-isoaspartat 98.4 9.2E-07 2E-11 87.5 8.6 98 212-321 74-179 (322)
130 PRK10901 16S rRNA methyltransf 98.4 1.8E-06 3.8E-11 88.3 11.0 115 220-335 244-389 (427)
131 PRK14901 16S rRNA methyltransf 98.4 1.9E-06 4.1E-11 88.2 10.6 115 221-336 253-402 (434)
132 PRK14904 16S rRNA methyltransf 98.4 1.2E-06 2.7E-11 89.9 9.0 114 221-336 251-395 (445)
133 PRK14903 16S rRNA methyltransf 98.4 1.3E-06 2.9E-11 89.5 9.1 115 220-335 237-383 (431)
134 COG2890 HemK Methylase of poly 98.4 3.5E-06 7.7E-11 81.8 11.5 113 223-339 113-255 (280)
135 PF02390 Methyltransf_4: Putat 98.3 1.4E-06 3.1E-11 80.2 8.1 114 222-336 19-148 (195)
136 KOG3045 Predicted RNA methylas 98.3 9.4E-07 2E-11 84.5 6.9 104 222-344 182-289 (325)
137 PRK11873 arsM arsenite S-adeno 98.3 6.7E-07 1.5E-11 85.3 6.0 73 6-79 108-185 (272)
138 TIGR00446 nop2p NOL1/NOP2/sun 98.3 4E-06 8.7E-11 80.4 10.3 102 220-322 71-199 (264)
139 PLN02781 Probable caffeoyl-CoA 98.3 3.2E-06 6.9E-11 79.8 9.4 128 220-354 68-233 (234)
140 PLN02490 MPBQ/MSBQ methyltrans 98.3 6.3E-07 1.4E-11 89.3 4.8 102 6-108 143-254 (340)
141 PRK01581 speE spermidine synth 98.3 1.6E-06 3.4E-11 87.1 7.5 103 219-323 149-269 (374)
142 PRK14902 16S rRNA methyltransf 98.3 2.7E-06 5.9E-11 87.3 9.2 116 221-336 251-397 (444)
143 COG0500 SmtA SAM-dependent met 98.3 5.7E-06 1.2E-10 65.5 9.0 94 224-324 52-157 (257)
144 PRK01683 trans-aconitate 2-met 98.3 2.2E-06 4.8E-11 80.9 7.4 94 6-106 61-154 (258)
145 PRK08317 hypothetical protein; 98.3 1.3E-06 2.9E-11 79.8 5.6 72 6-78 50-125 (241)
146 TIGR02072 BioC biotin biosynth 98.2 1.2E-06 2.5E-11 80.5 5.2 72 6-78 64-136 (240)
147 smart00138 MeTrc Methyltransfe 98.2 8.1E-07 1.8E-11 85.3 4.2 73 6-78 138-243 (264)
148 PF01739 CheR: CheR methyltran 98.2 4E-06 8.6E-11 77.5 8.4 128 194-324 4-177 (196)
149 PF13649 Methyltransf_25: Meth 98.2 2.5E-07 5.5E-12 75.1 0.3 66 6-71 30-101 (101)
150 COG2242 CobL Precorrin-6B meth 98.2 4.7E-05 1E-09 69.8 14.8 120 211-340 27-154 (187)
151 KOG4300 Predicted methyltransf 98.2 3.1E-06 6.7E-11 78.8 6.6 72 6-78 105-183 (252)
152 TIGR00417 speE spermidine synt 98.2 4.5E-06 9.7E-11 80.2 7.7 100 220-321 72-185 (270)
153 PF13489 Methyltransf_23: Meth 98.2 1.7E-06 3.7E-11 74.5 4.2 50 30-80 69-118 (161)
154 PRK11783 rlmL 23S rRNA m(2)G24 98.2 2.7E-06 5.9E-11 92.1 6.7 121 221-343 539-677 (702)
155 TIGR02752 MenG_heptapren 2-hep 98.2 2.2E-06 4.8E-11 79.4 5.1 71 7-78 77-152 (231)
156 KOG2940 Predicted methyltransf 98.2 1.7E-06 3.6E-11 81.7 4.2 97 220-321 72-173 (325)
157 PRK03612 spermidine synthase; 98.2 1.1E-05 2.4E-10 84.7 10.6 120 220-340 297-438 (521)
158 KOG1975 mRNA cap methyltransfe 98.1 6.2E-06 1.4E-10 81.1 7.7 137 194-340 97-256 (389)
159 PF01135 PCMT: Protein-L-isoas 98.1 3.9E-06 8.5E-11 78.2 5.8 100 210-322 64-172 (209)
160 PF05219 DREV: DREV methyltran 98.1 8.2E-06 1.8E-10 78.3 8.1 92 220-321 94-187 (265)
161 PHA03411 putative methyltransf 98.1 8.9E-06 1.9E-10 78.9 8.2 97 221-321 65-182 (279)
162 KOG1331 Predicted methyltransf 98.1 1.9E-06 4.2E-11 83.2 3.3 94 221-321 46-142 (293)
163 PLN02366 spermidine synthase 98.1 8.6E-06 1.9E-10 80.2 7.8 101 220-321 91-205 (308)
164 PF06080 DUF938: Protein of un 98.1 1.9E-05 4.2E-10 73.4 9.5 129 223-353 28-204 (204)
165 PRK10611 chemotaxis methyltran 98.1 8.3E-06 1.8E-10 79.6 7.1 124 192-324 93-264 (287)
166 PRK11036 putative S-adenosyl-L 98.1 2.5E-06 5.5E-11 80.9 3.3 72 6-78 72-150 (255)
167 PF05891 Methyltransf_PK: AdoM 98.0 1.3E-05 2.9E-10 75.0 7.7 121 220-343 55-198 (218)
168 PRK06922 hypothetical protein; 98.0 3.3E-06 7.1E-11 90.1 4.0 73 6-78 448-538 (677)
169 COG2813 RsmC 16S RNA G1207 met 98.0 1.9E-05 4E-10 77.3 8.7 108 223-333 161-279 (300)
170 PRK13256 thiopurine S-methyltr 98.0 2.2E-05 4.8E-10 74.1 8.9 95 221-321 44-162 (226)
171 smart00650 rADc Ribosomal RNA 98.0 2E-05 4.3E-10 70.2 8.1 95 221-323 14-114 (169)
172 TIGR00740 methyltransferase, p 98.0 1.4E-05 3E-10 74.9 6.9 72 6-79 85-163 (239)
173 PRK00107 gidB 16S rRNA methylt 98.0 4.2E-05 9.2E-10 70.1 9.7 102 6-122 75-186 (187)
174 KOG1269 SAM-dependent methyltr 98.0 7.2E-06 1.6E-10 82.4 5.0 94 223-323 113-216 (364)
175 PF01728 FtsJ: FtsJ-like methy 98.0 2E-05 4.4E-10 70.7 7.4 141 213-353 15-180 (181)
176 PF13847 Methyltransf_31: Meth 97.9 1.3E-05 2.9E-10 69.7 5.5 71 6-78 34-111 (152)
177 PRK13168 rumA 23S rRNA m(5)U19 97.9 7.9E-05 1.7E-09 76.6 12.0 110 221-341 298-419 (443)
178 PRK15068 tRNA mo(5)U34 methylt 97.9 1.1E-05 2.3E-10 79.8 5.4 70 7-78 152-227 (322)
179 PRK15451 tRNA cmo(5)U34 methyl 97.9 1.7E-05 3.7E-10 75.1 6.3 71 6-78 88-165 (247)
180 smart00828 PKS_MT Methyltransf 97.9 8.7E-06 1.9E-10 75.1 4.2 71 6-78 29-105 (224)
181 KOG1271 Methyltransferases [Ge 97.9 3.9E-05 8.4E-10 70.3 7.8 112 222-335 69-194 (227)
182 PRK11207 tellurite resistance 97.9 1.2E-05 2.6E-10 73.6 4.4 70 6-76 58-133 (197)
183 TIGR00477 tehB tellurite resis 97.9 1.2E-05 2.6E-10 73.6 4.1 70 6-76 58-132 (195)
184 COG2227 UbiG 2-polyprenyl-3-me 97.9 6E-06 1.3E-10 78.3 2.1 73 6-79 87-163 (243)
185 TIGR00452 methyltransferase, p 97.9 1.5E-05 3.3E-10 78.6 5.1 71 6-78 150-226 (314)
186 PHA03412 putative methyltransf 97.9 4.4E-05 9.6E-10 72.6 7.8 97 222-320 51-160 (241)
187 COG2521 Predicted archaeal met 97.9 5.1E-05 1.1E-09 71.9 8.1 133 219-354 133-287 (287)
188 COG0220 Predicted S-adenosylme 97.8 5.4E-05 1.2E-09 71.6 7.8 112 222-334 50-178 (227)
189 KOG3010 Methyltransferase [Gen 97.8 8.4E-06 1.8E-10 77.3 2.1 90 5-104 60-158 (261)
190 PRK00216 ubiE ubiquinone/menaq 97.8 0.00018 4E-09 66.1 10.8 72 6-78 82-159 (239)
191 TIGR00479 rumA 23S rRNA (uraci 97.8 9.4E-05 2E-09 75.5 9.7 111 221-341 293-415 (431)
192 PRK15128 23S rRNA m(5)C1962 me 97.8 7E-05 1.5E-09 76.2 8.6 120 221-342 221-365 (396)
193 PLN02476 O-methyltransferase 97.7 0.00018 3.9E-09 69.9 10.1 126 220-354 118-278 (278)
194 PF02527 GidB: rRNA small subu 97.7 0.00029 6.2E-09 64.6 10.7 132 198-341 27-170 (184)
195 TIGR01934 MenG_MenH_UbiE ubiqu 97.7 4.5E-05 9.8E-10 69.4 5.2 72 6-78 70-144 (223)
196 PRK03522 rumB 23S rRNA methylu 97.7 7.4E-05 1.6E-09 73.4 7.1 103 222-333 175-286 (315)
197 TIGR03587 Pse_Me-ase pseudamin 97.7 4.1E-05 8.9E-10 70.9 4.8 69 6-77 73-142 (204)
198 TIGR00478 tly hemolysin TlyA f 97.7 0.00017 3.7E-09 68.2 9.1 106 221-342 76-213 (228)
199 PF05148 Methyltransf_8: Hypot 97.7 7.1E-05 1.5E-09 69.9 6.3 91 26-124 109-199 (219)
200 PF01596 Methyltransf_3: O-met 97.7 0.00023 5E-09 66.2 9.7 126 220-354 45-205 (205)
201 PF05724 TPMT: Thiopurine S-me 97.7 8.9E-05 1.9E-09 69.5 6.7 127 210-343 29-187 (218)
202 COG1352 CheR Methylase of chem 97.7 0.00016 3.5E-09 70.0 8.2 130 194-326 70-245 (268)
203 PLN02672 methionine S-methyltr 97.6 0.00026 5.6E-09 79.9 10.7 116 222-341 120-298 (1082)
204 COG2518 Pcm Protein-L-isoaspar 97.6 0.00025 5.5E-09 66.2 8.8 98 210-323 64-170 (209)
205 PRK06202 hypothetical protein; 97.6 6.5E-05 1.4E-09 70.1 4.9 70 5-76 93-165 (232)
206 PF08242 Methyltransf_12: Meth 97.6 6.8E-06 1.5E-10 66.2 -1.5 66 7-73 27-99 (99)
207 PF05401 NodS: Nodulation prot 97.6 5E-05 1.1E-09 70.3 3.5 72 6-78 71-147 (201)
208 COG2519 GCD14 tRNA(1-methylade 97.6 0.00071 1.5E-08 64.8 10.9 116 213-340 89-214 (256)
209 PRK12335 tellurite resistance 97.6 7.9E-05 1.7E-09 72.1 4.5 70 6-76 148-222 (287)
210 PF12847 Methyltransf_18: Meth 97.5 7E-05 1.5E-09 61.0 3.5 70 7-77 32-111 (112)
211 KOG3045 Predicted RNA methylas 97.5 0.00016 3.5E-09 69.5 6.0 92 26-125 215-306 (325)
212 PRK11705 cyclopropane fatty ac 97.5 8.8E-05 1.9E-09 75.1 4.5 70 6-78 196-268 (383)
213 PRK00121 trmB tRNA (guanine-N( 97.5 0.00015 3.2E-09 66.8 5.3 72 6-78 70-157 (202)
214 PF12147 Methyltransf_20: Puta 97.5 0.00057 1.2E-08 66.8 9.4 126 219-344 134-277 (311)
215 PF10294 Methyltransf_16: Puta 97.4 0.00037 8.1E-09 62.7 7.1 120 198-322 17-156 (173)
216 KOG2899 Predicted methyltransf 97.4 0.00046 9.9E-09 65.9 7.6 100 221-322 59-209 (288)
217 TIGR02085 meth_trns_rumB 23S r 97.4 0.00047 1E-08 69.5 8.2 108 222-342 235-352 (374)
218 PF07021 MetW: Methionine bios 97.4 8.7E-05 1.9E-09 68.4 2.6 67 7-78 43-110 (193)
219 PRK10909 rsmD 16S rRNA m(2)G96 97.4 0.00046 1E-08 63.9 7.4 97 222-324 55-161 (199)
220 COG4627 Uncharacterized protei 97.4 1.1E-05 2.3E-10 72.1 -3.3 52 30-81 38-90 (185)
221 PF05185 PRMT5: PRMT5 arginine 97.4 0.00046 9.9E-09 71.4 7.7 127 190-319 151-294 (448)
222 COG4627 Uncharacterized protei 97.4 4.2E-05 9E-10 68.3 0.0 47 274-321 38-85 (185)
223 COG4122 Predicted O-methyltran 97.3 0.0012 2.5E-08 62.3 9.4 128 220-354 59-218 (219)
224 TIGR01177 conserved hypothetic 97.3 0.00029 6.2E-09 69.6 5.6 93 6-110 210-315 (329)
225 KOG1499 Protein arginine N-met 97.3 0.00032 6.9E-09 69.8 5.8 96 221-319 61-164 (346)
226 PLN03075 nicotianamine synthas 97.3 0.00024 5.2E-09 69.7 4.6 107 6-125 155-277 (296)
227 KOG2940 Predicted methyltransf 97.3 8.7E-05 1.9E-09 70.3 1.4 70 6-76 101-173 (325)
228 PRK05134 bifunctional 3-demeth 97.3 0.00025 5.3E-09 65.9 4.3 72 6-78 76-152 (233)
229 PF07942 N2227: N2227-like pro 97.3 0.0015 3.2E-08 63.4 9.8 115 221-344 57-240 (270)
230 KOG2904 Predicted methyltransf 97.2 0.0025 5.4E-08 61.9 10.6 121 198-322 129-285 (328)
231 TIGR01983 UbiG ubiquinone bios 97.2 0.00034 7.3E-09 64.3 4.3 71 7-78 74-150 (224)
232 TIGR00406 prmA ribosomal prote 97.2 0.00084 1.8E-08 65.2 7.2 69 6-78 188-260 (288)
233 TIGR00091 tRNA (guanine-N(7)-) 97.2 0.00057 1.2E-08 62.4 5.5 72 6-78 46-133 (194)
234 PLN02823 spermine synthase 97.2 0.0009 1.9E-08 66.8 7.2 100 220-321 103-219 (336)
235 TIGR00138 gidB 16S rRNA methyl 97.2 0.00089 1.9E-08 60.9 6.6 66 7-78 73-143 (181)
236 PRK00274 ksgA 16S ribosomal RN 97.2 0.00084 1.8E-08 64.7 6.4 65 221-289 43-112 (272)
237 PF09243 Rsm22: Mitochondrial 97.1 0.0024 5.3E-08 61.8 9.5 120 220-344 33-166 (274)
238 PRK04148 hypothetical protein; 97.1 0.0019 4E-08 56.5 7.7 89 220-321 16-108 (134)
239 TIGR02081 metW methionine bios 97.1 0.00048 1.1E-08 62.5 3.6 66 7-78 43-110 (194)
240 PRK00517 prmA ribosomal protei 97.1 0.0016 3.4E-08 61.9 7.2 91 6-110 148-238 (250)
241 TIGR02469 CbiT precorrin-6Y C5 97.0 0.0014 3E-08 53.9 5.8 69 5-77 48-122 (124)
242 PF02353 CMAS: Mycolic acid cy 97.0 0.00059 1.3E-08 66.1 4.0 67 7-76 92-165 (273)
243 COG1041 Predicted DNA modifica 97.0 0.0046 9.9E-08 61.8 10.3 108 222-332 199-320 (347)
244 PRK11933 yebU rRNA (cytosine-C 97.0 0.0038 8.3E-08 65.0 9.8 104 219-322 112-242 (470)
245 TIGR00537 hemK_rel_arch HemK-r 97.0 0.002 4.2E-08 57.7 6.7 71 6-78 47-141 (179)
246 PRK14896 ksgA 16S ribosomal RN 96.9 0.002 4.3E-08 61.6 6.9 66 221-292 30-101 (258)
247 PRK08287 cobalt-precorrin-6Y C 96.9 0.0069 1.5E-07 54.6 10.1 88 6-107 61-153 (187)
248 PRK13699 putative methylase; P 96.9 0.02 4.3E-07 54.0 13.2 43 34-76 15-71 (227)
249 PF08704 GCD14: tRNA methyltra 96.9 0.0053 1.2E-07 58.8 9.5 117 212-341 34-166 (247)
250 PRK13944 protein-L-isoaspartat 96.9 0.0019 4.2E-08 59.4 6.3 66 6-78 103-174 (205)
251 PRK00536 speE spermidine synth 96.9 0.0053 1.2E-07 59.3 9.4 91 219-323 71-172 (262)
252 KOG1270 Methyltransferases [Co 96.9 0.00044 9.6E-09 66.5 1.6 70 5-78 116-196 (282)
253 PLN02589 caffeoyl-CoA O-methyl 96.9 0.007 1.5E-07 58.0 9.7 126 220-354 79-246 (247)
254 TIGR00755 ksgA dimethyladenosi 96.8 0.004 8.6E-08 59.2 8.0 41 220-263 29-70 (253)
255 PF02475 Met_10: Met-10+ like- 96.8 0.0034 7.4E-08 58.3 7.2 108 193-319 82-199 (200)
256 PRK14121 tRNA (guanine-N(7)-)- 96.8 0.0015 3.4E-08 66.3 5.3 71 7-78 153-236 (390)
257 KOG1975 mRNA cap methyltransfe 96.8 0.0018 3.9E-08 64.1 5.3 75 6-80 146-240 (389)
258 COG1092 Predicted SAM-dependen 96.7 0.0037 8E-08 63.7 6.8 115 221-337 218-357 (393)
259 TIGR02716 C20_methyl_CrtF C-20 96.7 0.0022 4.8E-08 62.4 4.9 68 10-79 182-256 (306)
260 TIGR03534 RF_mod_PrmC protein- 96.6 0.0081 1.8E-07 55.9 8.4 96 6-111 117-242 (251)
261 cd02440 AdoMet_MTases S-adenos 96.6 0.0027 5.9E-08 48.6 4.0 71 6-76 27-103 (107)
262 PF01269 Fibrillarin: Fibrilla 96.6 0.016 3.4E-07 54.9 9.6 96 216-321 71-177 (229)
263 COG0357 GidB Predicted S-adeno 96.6 0.042 9.2E-07 51.7 12.5 135 198-344 46-193 (215)
264 PRK09489 rsmC 16S ribosomal RN 96.6 0.013 2.9E-07 58.5 9.8 71 6-78 226-304 (342)
265 PRK11188 rrmJ 23S rRNA methylt 96.5 0.0046 1E-07 57.4 5.9 44 34-78 112-166 (209)
266 COG4106 Tam Trans-aconitate me 96.5 0.0035 7.5E-08 59.1 4.9 110 6-129 60-170 (257)
267 TIGR03840 TMPT_Se_Te thiopurin 96.5 0.0041 8.9E-08 58.1 5.0 71 6-76 62-151 (213)
268 PF13659 Methyltransf_26: Meth 96.5 0.0021 4.5E-08 52.7 2.7 73 6-78 29-116 (117)
269 PF11968 DUF3321: Putative met 96.4 0.02 4.3E-07 53.9 9.4 112 222-344 53-179 (219)
270 PRK04338 N(2),N(2)-dimethylgua 96.4 0.0055 1.2E-07 62.2 6.1 91 222-321 59-157 (382)
271 KOG3178 Hydroxyindole-O-methyl 96.4 0.0076 1.6E-07 60.1 6.9 98 220-323 177-276 (342)
272 PRK13942 protein-L-isoaspartat 96.4 0.0074 1.6E-07 56.0 6.5 65 7-78 108-177 (212)
273 PRK11760 putative 23S rRNA C24 96.4 0.075 1.6E-06 53.4 13.8 92 220-321 211-304 (357)
274 KOG1331 Predicted methyltransf 96.4 0.00099 2.1E-08 64.8 0.4 79 2-81 67-147 (293)
275 PF06080 DUF938: Protein of un 96.4 0.013 2.9E-07 54.6 7.9 119 3-122 52-204 (204)
276 PRK14967 putative methyltransf 96.4 0.0057 1.2E-07 56.9 5.5 72 6-78 65-160 (223)
277 PTZ00338 dimethyladenosine tra 96.4 0.0084 1.8E-07 58.8 6.8 63 221-289 37-108 (294)
278 TIGR00095 RNA methyltransferas 96.4 0.0096 2.1E-07 54.5 6.8 96 222-323 51-160 (189)
279 COG1189 Predicted rRNA methyla 96.3 0.047 1E-06 52.1 11.3 122 213-343 73-221 (245)
280 KOG1541 Predicted protein carb 96.3 0.014 2.9E-07 55.4 7.6 73 6-79 78-162 (270)
281 PRK10901 16S rRNA methyltransf 96.3 0.0062 1.3E-07 62.4 5.7 77 6-82 274-377 (427)
282 PRK14901 16S rRNA methyltransf 96.3 0.0093 2E-07 61.3 7.0 76 6-81 283-388 (434)
283 COG0500 SmtA SAM-dependent met 96.3 0.007 1.5E-07 47.7 4.8 72 6-79 78-157 (257)
284 TIGR02143 trmA_only tRNA (urac 96.3 0.011 2.4E-07 59.3 7.2 106 223-342 200-330 (353)
285 PRK00050 16S rRNA m(4)C1402 me 96.3 0.0046 9.9E-08 60.8 4.3 82 210-293 11-101 (296)
286 KOG1500 Protein arginine N-met 96.2 0.018 3.8E-07 57.6 8.2 118 220-341 177-308 (517)
287 TIGR00563 rsmB ribosomal RNA s 96.2 0.012 2.5E-07 60.4 7.2 76 6-81 268-372 (426)
288 TIGR02021 BchM-ChlM magnesium 96.2 0.0029 6.4E-08 58.4 2.5 68 6-76 83-157 (219)
289 PRK04266 fibrillarin; Provisio 96.2 0.0061 1.3E-07 57.5 4.6 98 7-109 103-209 (226)
290 PF01170 UPF0020: Putative RNA 96.2 0.0047 1E-07 56.0 3.7 119 220-343 28-168 (179)
291 PRK11727 23S rRNA mA1618 methy 96.2 0.022 4.8E-07 56.6 8.7 120 219-344 113-267 (321)
292 PF08003 Methyltransf_9: Prote 96.2 0.0059 1.3E-07 60.1 4.5 74 3-78 144-220 (315)
293 PRK10611 chemotaxis methyltran 96.1 0.0025 5.4E-08 62.3 1.8 47 32-78 215-263 (287)
294 PRK14968 putative methyltransf 96.1 0.047 1E-06 48.3 9.8 92 7-107 52-170 (188)
295 TIGR03439 methyl_EasF probable 96.1 0.021 4.5E-07 56.8 8.2 98 222-321 78-196 (319)
296 PRK13255 thiopurine S-methyltr 96.1 0.0073 1.6E-07 56.6 4.5 70 6-75 65-153 (218)
297 KOG1269 SAM-dependent methyltr 95.9 0.004 8.6E-08 62.9 2.2 49 27-76 166-214 (364)
298 PRK07580 Mg-protoporphyrin IX 95.9 0.0088 1.9E-07 55.0 4.2 66 6-74 91-163 (230)
299 PRK05031 tRNA (uracil-5-)-meth 95.9 0.022 4.8E-07 57.3 7.3 107 222-342 208-339 (362)
300 KOG1663 O-methyltransferase [S 95.9 0.018 3.8E-07 54.7 6.1 96 221-322 74-183 (237)
301 PRK09328 N5-glutamine S-adenos 95.9 0.071 1.5E-06 50.5 10.4 96 6-111 138-263 (275)
302 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.9 0.0099 2.1E-07 57.3 4.5 42 281-322 157-199 (256)
303 PTZ00146 fibrillarin; Provisio 95.8 0.011 2.4E-07 57.9 4.8 66 7-76 164-236 (293)
304 PRK00377 cbiT cobalt-precorrin 95.8 0.023 5E-07 51.8 6.6 68 7-78 72-146 (198)
305 TIGR00080 pimt protein-L-isoas 95.8 0.021 4.6E-07 52.7 6.4 66 6-78 108-178 (215)
306 COG2521 Predicted archaeal met 95.8 0.009 1.9E-07 57.0 3.7 69 34-109 200-276 (287)
307 PRK14904 16S rRNA methyltransf 95.8 0.027 6E-07 58.0 7.7 75 6-81 281-381 (445)
308 KOG1661 Protein-L-isoaspartate 95.8 0.024 5.2E-07 53.3 6.4 91 222-323 84-194 (237)
309 KOG3115 Methyltransferase-like 95.8 0.02 4.4E-07 53.6 5.8 100 223-325 63-186 (249)
310 COG5459 Predicted rRNA methyla 95.8 0.012 2.5E-07 59.1 4.6 101 221-323 114-226 (484)
311 TIGR03438 probable methyltrans 95.7 0.0084 1.8E-07 58.6 3.5 76 3-78 91-178 (301)
312 PF03291 Pox_MCEL: mRNA cappin 95.7 0.0077 1.7E-07 60.0 3.2 74 6-79 91-188 (331)
313 COG2263 Predicted RNA methylas 95.7 0.017 3.6E-07 53.4 5.1 65 221-290 46-116 (198)
314 COG1041 Predicted DNA modifica 95.7 0.016 3.5E-07 58.0 5.2 73 6-78 225-311 (347)
315 COG4976 Predicted methyltransf 95.7 0.0032 7E-08 59.8 0.3 103 6-109 153-264 (287)
316 PRK13699 putative methylase; P 95.6 0.031 6.8E-07 52.7 6.8 40 301-340 51-90 (227)
317 PF10672 Methyltrans_SAM: S-ad 95.6 0.012 2.5E-07 57.7 3.9 101 221-323 124-239 (286)
318 PRK14966 unknown domain/N5-glu 95.6 0.098 2.1E-06 53.9 10.5 105 6-119 281-415 (423)
319 PRK14903 16S rRNA methyltransf 95.5 0.02 4.4E-07 58.9 5.3 76 6-81 268-370 (431)
320 TIGR00446 nop2p NOL1/NOP2/sun 95.4 0.043 9.3E-07 52.7 6.9 76 6-81 102-203 (264)
321 PF03848 TehB: Tellurite resis 95.3 0.022 4.7E-07 52.7 4.5 69 7-76 59-132 (192)
322 COG3963 Phospholipid N-methylt 95.3 0.036 7.9E-07 50.5 5.7 105 216-322 44-156 (194)
323 PLN02585 magnesium protoporphy 95.3 0.021 4.7E-07 56.5 4.6 68 6-78 172-250 (315)
324 PF05175 MTS: Methyltransferas 95.3 0.068 1.5E-06 47.7 7.4 68 7-78 62-141 (170)
325 PF01739 CheR: CheR methyltran 95.2 0.0099 2.2E-07 55.0 1.8 46 33-78 130-176 (196)
326 PRK00312 pcm protein-L-isoaspa 95.1 0.061 1.3E-06 49.4 6.9 65 7-78 107-176 (212)
327 TIGR00536 hemK_fam HemK family 95.1 0.22 4.8E-06 48.1 11.0 99 6-114 144-273 (284)
328 COG0421 SpeE Spermidine syntha 94.9 0.14 3E-06 50.1 9.0 101 219-321 75-189 (282)
329 COG1889 NOP1 Fibrillarin-like 94.8 0.51 1.1E-05 44.4 11.9 93 221-321 77-179 (231)
330 COG4798 Predicted methyltransf 94.8 0.1 2.2E-06 48.7 7.3 107 214-323 44-167 (238)
331 COG2264 PrmA Ribosomal protein 94.8 0.026 5.6E-07 55.6 3.6 92 6-109 191-287 (300)
332 PF11968 DUF3321: Putative met 94.8 0.099 2.1E-06 49.3 7.3 84 36-125 101-195 (219)
333 PF01564 Spermine_synth: Sperm 94.8 0.12 2.7E-06 49.2 8.2 123 220-344 76-218 (246)
334 TIGR00308 TRM1 tRNA(guanine-26 94.8 0.043 9.3E-07 55.7 5.3 90 223-321 47-146 (374)
335 PRK11524 putative methyltransf 94.8 0.076 1.7E-06 51.5 6.8 33 301-333 59-91 (284)
336 COG0144 Sun tRNA and rRNA cyto 94.7 0.12 2.5E-06 52.1 8.1 101 217-322 153-288 (355)
337 TIGR03533 L3_gln_methyl protei 94.7 0.13 2.8E-06 50.1 8.2 72 6-78 151-252 (284)
338 KOG3987 Uncharacterized conser 94.7 0.014 3E-07 54.9 1.3 91 221-321 113-206 (288)
339 TIGR00438 rrmJ cell division p 94.7 0.064 1.4E-06 48.4 5.6 44 35-78 94-147 (188)
340 PRK13256 thiopurine S-methyltr 94.5 0.05 1.1E-06 51.5 4.7 72 6-77 71-163 (226)
341 KOG3201 Uncharacterized conser 94.5 0.0079 1.7E-07 54.4 -0.6 79 33-123 97-175 (201)
342 COG0293 FtsJ 23S rRNA methylas 94.5 0.059 1.3E-06 50.4 5.0 113 221-338 46-180 (205)
343 PF07942 N2227: N2227-like pro 94.4 0.032 7E-07 54.2 3.1 73 37-110 163-242 (270)
344 PF03269 DUF268: Caenorhabditi 94.3 0.031 6.6E-07 50.5 2.6 44 279-322 60-111 (177)
345 TIGR02987 met_A_Alw26 type II 94.3 0.17 3.7E-06 53.1 8.6 41 221-261 32-80 (524)
346 COG2230 Cfa Cyclopropane fatty 94.3 0.049 1.1E-06 53.3 4.1 69 7-78 102-177 (283)
347 KOG2798 Putative trehalase [Ca 94.3 0.12 2.6E-06 51.3 6.7 62 281-345 258-336 (369)
348 PRK14902 16S rRNA methyltransf 94.2 0.095 2.1E-06 54.0 6.4 75 6-81 281-383 (444)
349 KOG2361 Predicted methyltransf 94.2 0.046 1E-06 52.3 3.6 75 7-81 104-187 (264)
350 KOG3201 Uncharacterized conser 94.0 0.064 1.4E-06 48.7 4.0 119 221-343 30-163 (201)
351 PRK00811 spermidine synthase; 94.0 0.13 2.9E-06 49.9 6.6 71 7-78 107-192 (283)
352 PF03602 Cons_hypoth95: Conser 93.9 0.03 6.5E-07 51.2 1.8 97 222-323 44-154 (183)
353 PRK15001 SAM-dependent 23S rib 93.6 0.098 2.1E-06 53.2 5.1 72 6-78 258-341 (378)
354 PF02384 N6_Mtase: N-6 DNA Met 93.5 0.16 3.5E-06 49.3 6.3 107 219-325 45-186 (311)
355 PRK13943 protein-L-isoaspartat 93.2 0.16 3.4E-06 50.6 5.6 65 7-78 112-181 (322)
356 PRK11805 N5-glutamine S-adenos 93.1 0.15 3.3E-06 50.1 5.4 73 5-78 162-264 (307)
357 PLN02668 indole-3-acetate carb 93.1 0.3 6.6E-06 49.8 7.6 17 279-295 158-175 (386)
358 KOG2352 Predicted spermine/spe 93.1 0.32 6.9E-06 50.7 7.8 98 223-323 51-162 (482)
359 KOG2352 Predicted spermine/spe 93.1 0.2 4.4E-06 52.2 6.4 71 6-76 77-160 (482)
360 PRK01581 speE spermidine synth 92.9 0.45 9.8E-06 48.3 8.5 71 7-78 181-269 (374)
361 KOG3191 Predicted N6-DNA-methy 92.9 1.1 2.4E-05 41.5 10.2 118 221-344 44-191 (209)
362 PF03269 DUF268: Caenorhabditi 92.9 0.044 9.6E-07 49.5 1.1 43 38-80 62-114 (177)
363 PF01170 UPF0020: Putative RNA 92.7 0.33 7.1E-06 44.0 6.5 89 5-109 66-170 (179)
364 COG1352 CheR Methylase of chem 92.6 0.12 2.7E-06 50.1 3.8 43 36-78 199-242 (268)
365 PF05958 tRNA_U5-meth_tr: tRNA 92.4 0.93 2E-05 45.5 10.0 107 223-342 199-329 (352)
366 PF05219 DREV: DREV methyltran 92.4 0.16 3.5E-06 49.2 4.3 65 7-76 123-187 (265)
367 KOG1271 Methyltransferases [Ge 92.4 0.37 8.1E-06 44.7 6.4 73 6-78 97-182 (227)
368 COG2265 TrmA SAM-dependent met 92.3 0.51 1.1E-05 48.9 8.1 108 220-334 293-409 (432)
369 PF01234 NNMT_PNMT_TEMT: NNMT/ 92.3 0.091 2E-06 50.7 2.5 48 30-77 144-199 (256)
370 PRK03612 spermidine synthase; 92.1 0.32 7E-06 51.3 6.6 71 7-78 328-416 (521)
371 PRK04457 spermidine synthase; 91.9 0.57 1.2E-05 45.0 7.5 70 7-76 97-176 (262)
372 COG0742 N6-adenine-specific me 91.9 0.53 1.2E-05 43.4 6.9 99 221-325 44-157 (187)
373 PF06859 Bin3: Bicoid-interact 91.6 0.069 1.5E-06 45.2 0.6 59 283-341 2-71 (110)
374 KOG1596 Fibrillarin and relate 91.3 0.69 1.5E-05 44.6 7.1 100 213-322 151-261 (317)
375 PRK07402 precorrin-6B methylas 91.1 0.33 7.2E-06 44.0 4.7 67 7-78 71-143 (196)
376 PF13679 Methyltransf_32: Meth 91.0 0.24 5.2E-06 42.9 3.5 43 219-263 24-72 (141)
377 PF00891 Methyltransf_2: O-met 90.9 0.27 5.9E-06 45.9 4.0 45 33-79 154-201 (241)
378 KOG2899 Predicted methyltransf 90.8 0.23 5.1E-06 47.8 3.5 61 33-97 160-225 (288)
379 PF06325 PrmA: Ribosomal prote 90.5 0.56 1.2E-05 46.1 6.0 89 7-110 191-283 (295)
380 PF01189 Nol1_Nop2_Fmu: NOL1/N 90.5 0.34 7.4E-06 47.1 4.4 116 217-336 82-237 (283)
381 PRK11783 rlmL 23S rRNA m(2)G24 90.4 0.68 1.5E-05 50.7 7.1 79 247-325 258-350 (702)
382 KOG1709 Guanidinoacetate methy 90.2 0.84 1.8E-05 43.4 6.5 96 219-322 100-206 (271)
383 TIGR00417 speE spermidine synt 90.2 0.63 1.4E-05 44.7 5.9 71 7-78 103-187 (270)
384 COG4123 Predicted O-methyltran 89.9 0.49 1.1E-05 45.5 4.8 89 7-107 75-191 (248)
385 KOG2539 Mitochondrial/chloropl 89.2 0.9 1.9E-05 47.3 6.4 100 220-323 200-316 (491)
386 KOG1122 tRNA and rRNA cytosine 89.0 1.8 3.9E-05 44.7 8.4 102 215-322 236-371 (460)
387 TIGR01444 fkbM_fam methyltrans 88.7 0.41 8.9E-06 40.6 3.1 30 223-252 1-32 (143)
388 PF13578 Methyltransf_24: Meth 88.7 0.14 3.1E-06 41.5 0.2 94 225-322 1-105 (106)
389 PRK11524 putative methyltransf 88.6 0.38 8.2E-06 46.6 3.2 54 25-78 11-81 (284)
390 PF05724 TPMT: Thiopurine S-me 88.5 0.42 9E-06 44.9 3.3 68 7-75 66-153 (218)
391 PLN02366 spermidine synthase 88.4 1.1 2.4E-05 44.3 6.3 71 7-78 122-207 (308)
392 PHA03411 putative methyltransf 88.1 0.77 1.7E-05 44.9 4.9 75 6-81 94-189 (279)
393 PF08123 DOT1: Histone methyla 87.3 0.83 1.8E-05 42.6 4.5 35 282-321 122-157 (205)
394 COG3897 Predicted methyltransf 87.3 1.6 3.5E-05 40.9 6.2 96 220-324 79-181 (218)
395 PRK11933 yebU rRNA (cytosine-C 87.0 0.86 1.9E-05 47.7 4.8 77 5-81 143-246 (470)
396 PF01555 N6_N4_Mtase: DNA meth 86.9 0.55 1.2E-05 42.3 3.0 21 301-321 35-55 (231)
397 PF09445 Methyltransf_15: RNA 86.1 0.56 1.2E-05 42.3 2.5 109 222-337 1-135 (163)
398 KOG0820 Ribosomal RNA adenine 85.4 2.7 5.9E-05 41.3 6.9 62 221-288 59-129 (315)
399 PLN02781 Probable caffeoyl-CoA 85.3 0.98 2.1E-05 42.6 3.9 66 7-76 100-177 (234)
400 PF02390 Methyltransf_4: Putat 85.2 1 2.3E-05 41.4 3.9 66 12-78 57-134 (195)
401 COG0220 Predicted S-adenosylme 85.0 1.5 3.3E-05 41.5 5.0 67 11-78 87-165 (227)
402 TIGR03704 PrmC_rel_meth putati 84.9 4.1 8.9E-05 38.8 8.0 94 6-108 116-238 (251)
403 PF03492 Methyltransf_7: SAM d 84.8 0.7 1.5E-05 46.1 2.8 17 279-295 103-120 (334)
404 COG0030 KsgA Dimethyladenosine 84.8 2.9 6.2E-05 40.6 6.9 66 221-289 31-102 (259)
405 cd08283 FDH_like_1 Glutathione 84.0 4.4 9.6E-05 40.4 8.2 99 222-322 186-306 (386)
406 COG2519 GCD14 tRNA(1-methylade 84.0 2.8 6.2E-05 40.5 6.4 86 7-107 126-217 (256)
407 PF06859 Bin3: Bicoid-interact 83.9 0.18 3.9E-06 42.7 -1.6 38 40-78 2-45 (110)
408 cd08254 hydroxyacyl_CoA_DH 6-h 83.4 4.1 8.9E-05 38.9 7.4 87 222-321 167-262 (338)
409 PF04816 DUF633: Family of unk 82.4 14 0.00031 34.4 10.3 111 224-344 1-122 (205)
410 COG2520 Predicted methyltransf 82.4 8.6 0.00019 38.8 9.3 110 221-340 189-314 (341)
411 COG2813 RsmC 16S RNA G1207 met 81.5 2.6 5.6E-05 41.7 5.2 69 6-78 188-267 (300)
412 PF12147 Methyltransf_20: Puta 81.5 3.4 7.5E-05 40.8 6.0 113 6-118 167-306 (311)
413 COG4122 Predicted O-methyltran 81.4 2.5 5.4E-05 40.0 4.9 66 7-76 91-165 (219)
414 PF01135 PCMT: Protein-L-isoas 81.3 1.9 4.1E-05 40.3 4.0 64 7-78 104-173 (209)
415 PF01555 N6_N4_Mtase: DNA meth 80.9 2.4 5.2E-05 38.1 4.5 23 58-80 37-59 (231)
416 COG1064 AdhP Zn-dependent alco 80.8 3 6.4E-05 42.0 5.4 88 221-321 167-258 (339)
417 KOG2915 tRNA(1-methyladenosine 80.2 13 0.00028 36.6 9.3 121 212-344 99-233 (314)
418 KOG2198 tRNA cytosine-5-methyl 80.1 8.3 0.00018 39.2 8.3 129 214-344 151-326 (375)
419 COG4262 Predicted spermidine s 79.6 5.1 0.00011 41.0 6.6 99 220-324 289-409 (508)
420 PF05891 Methyltransf_PK: AdoM 79.4 1.2 2.5E-05 42.2 1.9 104 8-111 86-202 (218)
421 KOG3420 Predicted RNA methylas 79.0 3.1 6.8E-05 37.4 4.4 69 221-293 49-125 (185)
422 PHA01634 hypothetical protein 78.5 4.7 0.0001 35.5 5.2 55 193-254 5-60 (156)
423 PF04445 SAM_MT: Putative SAM- 78.5 3 6.6E-05 39.8 4.5 98 194-294 45-163 (234)
424 smart00650 rADc Ribosomal RNA 78.5 2.5 5.4E-05 37.3 3.7 67 6-76 41-112 (169)
425 PHA03412 putative methyltransf 77.6 5.8 0.00012 38.1 6.1 67 7-75 83-160 (241)
426 PF00398 RrnaAD: Ribosomal RNA 77.6 2.1 4.5E-05 41.0 3.1 40 220-262 30-70 (262)
427 PRK00536 speE spermidine synth 77.0 4.1 8.8E-05 39.5 5.0 35 37-77 137-171 (262)
428 COG0144 Sun tRNA and rRNA cyto 75.9 6.6 0.00014 39.5 6.3 77 5-81 187-292 (355)
429 KOG1099 SAM-dependent methyltr 75.8 1.1 2.3E-05 43.1 0.6 135 198-336 17-182 (294)
430 PLN02823 spermine synthase 75.2 8.9 0.00019 38.4 7.0 70 7-77 134-220 (336)
431 PRK10742 putative methyltransf 74.7 15 0.00032 35.5 8.0 91 213-309 81-188 (250)
432 KOG2793 Putative N2,N2-dimethy 73.6 10 0.00022 36.6 6.6 95 220-321 86-198 (248)
433 KOG2798 Putative trehalase [Ca 72.7 3.5 7.5E-05 41.3 3.3 68 38-109 258-336 (369)
434 PF11899 DUF3419: Protein of u 72.6 3.3 7.2E-05 42.2 3.3 44 279-323 291-335 (380)
435 PF08704 GCD14: tRNA methyltra 72.4 9.9 0.00021 36.5 6.3 87 7-107 72-168 (247)
436 PF10294 Methyltransf_16: Puta 71.5 2.2 4.7E-05 38.3 1.5 42 36-78 116-157 (173)
437 PF03059 NAS: Nicotianamine sy 71.5 12 0.00026 36.6 6.7 100 221-323 121-231 (276)
438 PF03492 Methyltransf_7: SAM d 70.3 3.4 7.3E-05 41.3 2.7 23 31-54 99-121 (334)
439 COG4798 Predicted methyltransf 70.3 1.7 3.8E-05 40.7 0.6 72 36-109 127-204 (238)
440 PRK15128 23S rRNA m(5)C1962 me 69.4 5.8 0.00013 40.6 4.2 71 6-78 249-340 (396)
441 PF14740 DUF4471: Domain of un 69.3 6.8 0.00015 38.6 4.5 56 279-342 219-285 (289)
442 COG2890 HemK Methylase of poly 69.1 55 0.0012 31.8 10.8 95 6-111 140-264 (280)
443 PF02527 GidB: rRNA small subu 68.9 14 0.0003 33.9 6.2 81 16-108 92-173 (184)
444 KOG2187 tRNA uracil-5-methyltr 68.6 3.3 7.3E-05 43.7 2.3 46 193-242 359-405 (534)
445 COG2518 Pcm Protein-L-isoaspar 68.0 12 0.00025 35.3 5.5 64 8-78 102-170 (209)
446 PF06962 rRNA_methylase: Putat 65.2 23 0.00049 31.3 6.5 94 7-103 6-115 (140)
447 PRK01747 mnmC bifunctional tRN 64.7 13 0.00028 40.2 6.0 58 281-342 165-223 (662)
448 cd08230 glucose_DH Glucose deh 64.2 33 0.00072 33.5 8.3 90 221-321 173-268 (355)
449 COG0863 DNA modification methy 64.1 17 0.00038 34.5 6.1 50 301-354 78-127 (302)
450 TIGR02822 adh_fam_2 zinc-bindi 64.0 37 0.0008 33.1 8.5 85 221-321 166-253 (329)
451 PF05430 Methyltransf_30: S-ad 63.9 19 0.0004 31.0 5.7 50 302-354 70-124 (124)
452 PLN02668 indole-3-acetate carb 63.0 6.4 0.00014 40.3 3.1 22 32-54 155-176 (386)
453 cd08245 CAD Cinnamyl alcohol d 62.6 37 0.00081 32.4 8.2 89 221-321 163-255 (330)
454 cd08234 threonine_DH_like L-th 61.9 35 0.00076 32.6 7.9 89 221-321 160-256 (334)
455 COG4076 Predicted RNA methylas 61.4 5.6 0.00012 37.3 2.1 91 222-320 34-133 (252)
456 PRK13168 rumA 23S rRNA m(5)U19 59.9 17 0.00037 37.4 5.6 69 6-79 325-402 (443)
457 PF00107 ADH_zinc_N: Zinc-bind 59.7 16 0.00035 30.0 4.5 80 230-321 1-88 (130)
458 COG0116 Predicted N6-adenine-s 59.5 53 0.0011 33.7 8.8 107 221-329 192-351 (381)
459 KOG1663 O-methyltransferase [S 58.9 21 0.00045 34.2 5.4 38 35-76 145-182 (237)
460 PLN02476 O-methyltransferase 58.5 6.3 0.00014 38.5 2.0 66 7-76 150-227 (278)
461 cd00315 Cyt_C5_DNA_methylase C 57.9 22 0.00048 34.3 5.7 65 223-289 2-69 (275)
462 PF07757 AdoMet_MTase: Predict 57.9 6.7 0.00015 33.3 1.8 25 220-244 58-82 (112)
463 PF11899 DUF3419: Protein of u 56.6 12 0.00026 38.2 3.7 43 35-78 291-335 (380)
464 KOG1661 Protein-L-isoaspartate 55.8 15 0.00034 34.8 4.0 54 17-78 141-194 (237)
465 KOG4589 Cell division protein 55.8 37 0.00081 31.9 6.4 19 221-239 70-88 (232)
466 PRK09424 pntA NAD(P) transhydr 54.6 47 0.001 35.3 7.8 96 220-321 164-284 (509)
467 KOG1562 Spermidine synthase [A 53.7 29 0.00063 34.6 5.7 100 220-322 121-236 (337)
468 KOG3178 Hydroxyindole-O-methyl 51.4 14 0.0003 37.3 3.1 45 30-78 231-276 (342)
469 PF07091 FmrO: Ribosomal RNA m 51.4 19 0.00041 34.9 3.9 117 219-343 104-241 (251)
470 PF00107 ADH_zinc_N: Zinc-bind 50.9 8.4 0.00018 31.7 1.3 65 7-78 21-90 (130)
471 COG2242 CobL Precorrin-6B meth 50.9 29 0.00062 32.2 4.9 60 13-78 74-136 (187)
472 COG1092 Predicted SAM-dependen 50.2 6.1 0.00013 40.5 0.4 72 7-78 247-337 (393)
473 cd08232 idonate-5-DH L-idonate 49.2 76 0.0016 30.4 7.9 90 221-321 166-261 (339)
474 TIGR00479 rumA 23S rRNA (uraci 48.8 26 0.00057 35.8 4.8 69 6-78 320-397 (431)
475 PF10354 DUF2431: Domain of un 48.5 45 0.00097 29.9 5.7 58 280-339 72-145 (166)
476 COG1063 Tdh Threonine dehydrog 48.5 52 0.0011 32.7 6.8 88 223-321 171-268 (350)
477 cd05188 MDR Medium chain reduc 48.3 59 0.0013 29.4 6.7 90 221-322 135-232 (271)
478 PF04672 Methyltransf_19: S-ad 48.2 50 0.0011 32.2 6.3 37 285-321 153-189 (267)
479 PRK04338 N(2),N(2)-dimethylgua 48.2 23 0.00049 36.2 4.2 70 6-80 87-161 (382)
480 PF14740 DUF4471: Domain of un 46.3 27 0.00058 34.5 4.2 66 37-108 220-287 (289)
481 PRK10909 rsmD 16S rRNA m(2)G96 46.1 1.3E+02 0.0028 27.8 8.5 101 7-124 83-192 (199)
482 TIGR00478 tly hemolysin TlyA f 45.6 70 0.0015 30.3 6.8 92 6-107 104-214 (228)
483 COG2384 Predicted SAM-dependen 45.2 2.8E+02 0.0062 26.5 11.5 125 223-354 19-159 (226)
484 COG0421 SpeE Spermidine syntha 44.7 41 0.00089 33.0 5.2 68 7-76 107-189 (282)
485 KOG2651 rRNA adenine N-6-methy 44.7 24 0.00053 36.4 3.7 33 219-254 152-185 (476)
486 PF01564 Spermine_synth: Sperm 44.2 20 0.00043 34.1 2.9 71 7-78 107-192 (246)
487 TIGR01202 bchC 2-desacetyl-2-h 44.0 71 0.0015 30.7 6.8 82 222-321 146-230 (308)
488 PF06962 rRNA_methylase: Putat 44.0 43 0.00093 29.5 4.7 62 281-344 45-123 (140)
489 COG1064 AdhP Zn-dependent alco 43.9 26 0.00057 35.3 3.8 65 7-79 197-261 (339)
490 cd08237 ribitol-5-phosphate_DH 43.8 65 0.0014 31.5 6.6 88 221-321 164-255 (341)
491 TIGR00675 dcm DNA-methyltransf 43.5 2.7E+02 0.0059 27.3 10.9 97 224-325 1-110 (315)
492 TIGR03439 methyl_EasF probable 43.1 26 0.00055 35.0 3.6 77 2-78 106-198 (319)
493 cd08261 Zn_ADH7 Alcohol dehydr 42.7 54 0.0012 31.5 5.7 89 222-321 161-257 (337)
494 PLN02589 caffeoyl-CoA O-methyl 41.9 17 0.00037 34.8 2.1 36 37-76 154-189 (247)
495 COG0287 TyrA Prephenate dehydr 41.4 99 0.0021 30.2 7.3 107 222-338 4-116 (279)
496 KOG2904 Predicted methyltransf 40.2 1.5E+02 0.0032 29.5 8.1 99 6-109 178-313 (328)
497 KOG1709 Guanidinoacetate methy 39.7 14 0.0003 35.4 1.1 42 34-76 164-205 (271)
498 COG4301 Uncharacterized conser 39.4 94 0.002 30.5 6.5 99 221-321 79-192 (321)
499 PF10354 DUF2431: Domain of un 38.2 1.8E+02 0.0038 26.1 7.9 86 11-108 44-150 (166)
500 KOG1122 tRNA and rRNA cytosine 38.0 77 0.0017 33.1 6.1 68 13-81 283-375 (460)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=6.1e-106 Score=810.32 Aligned_cols=347 Identities=53% Similarity=1.077 Sum_probs=331.3
Q ss_pred CCCCcCCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983 1 MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV 80 (363)
Q Consensus 1 ms~ap~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~ 80 (363)
|||||+|.|++|+|||+|||+|++++++++++|||||++||+|||++|+++|+.+++.+|.|++|||||||||++|+||+
T Consensus 143 ~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 143 MSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred EEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 89999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred C-CCChhhHHHHHHHHHHHhhcceEEEEEecCCCceeEEEEecCCCChhcccccC-CCCCCCCCCCCCCCCCccccCccc
Q 017983 81 Y-RHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREE-NTPPLCDGKNNLNSSWHVPLSNCI 158 (363)
Q Consensus 81 ~-~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~~~~c~~~~~~-~~~~~C~~~~~~~~~wy~~~~~Cl 158 (363)
| ++.+++.++|++|++||++|||++++++++ ++|||||.||+||++|+. +.||+|++++|||++||+||++||
T Consensus 223 ~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~-----~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Ci 297 (506)
T PF03141_consen 223 YQRTDEDLEEEWNAMEDLAKSLCWKKVAEKGD-----TAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACI 297 (506)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHheeeCC-----EEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhc
Confidence 9 788889999999999999999999999988 899999999999999986 789999988999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CchhhccccchhHHHHHHHhhhh--ccccCCCCCceEEEecccc
Q 017983 159 SRLPTDSKGNLHSWPAPWPQRLSSKPPSLPP-----DSEEAFNKDTTHWYALVSDVYVG--GLAINWSSVRNVMDMNASY 231 (363)
Q Consensus 159 ~~~p~~~~~~~~~~p~~WP~rl~~~~~~l~~-----~~~e~F~~~~~~W~~~~~~~y~~--~l~i~~~~~r~VLDvGCG~ 231 (363)
+|+|+......++++.+||+||+++|+||+. ++.|.|.+|+++|++++.+ |.. .+.++++++||||||++|+
T Consensus 298 t~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~-Y~~l~~~~i~~~~iRNVMDMnAg~ 376 (506)
T PF03141_consen 298 TPLPEVSSEIAGGWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSH-YKKLLGLAIKWGRIRNVMDMNAGY 376 (506)
T ss_pred CcCCcccccccccCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHH-HHHhhcccccccceeeeeeecccc
Confidence 9999975445566899999999999999987 4799999999999999997 543 3458899999999999999
Q ss_pred cHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCceeeeccccccCCCCCCCcceeeeccccccccccCCHHHHHHHHhHh
Q 017983 232 GGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRI 311 (363)
Q Consensus 232 G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RV 311 (363)
|+|||+|.+++||||||+|+..+++|.++++|||+|+||||||++++||+|||+||++.+|+++.++|+++++|.|||||
T Consensus 377 GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRI 456 (506)
T PF03141_consen 377 GGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRI 456 (506)
T ss_pred cHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhh
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeEEEEEcCHHHHHHHHHHHHhCCceeeee--------cceEEEEEe
Q 017983 312 LRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY--------HDQFLVGKK 353 (363)
Q Consensus 312 LRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~--------~~~~li~~K 353 (363)
|||||++||+|..+++.+|++++++|+|++.+. +|+||||||
T Consensus 457 LRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 457 LRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred cCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 999999999999999999999999999999887 699999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=3.4e-40 Score=333.55 Aligned_cols=213 Identities=22% Similarity=0.379 Sum_probs=181.4
Q ss_pred CChhcccccCCCCCCCCCCCCCCCCCccccCcccccCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCC--------
Q 017983 125 SYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRL------SSKPPSLPPD-------- 190 (363)
Q Consensus 125 ~~~c~~~~~~~~~~~C~~~~~~~~~wy~~~~~Cl~~~p~~~~~~~~~~p~~WP~rl------~~~~~~l~~~-------- 190 (363)
+.+-+++||+| |+..++ +..|++|+|. +|+ .|++||+|+ |+|++.|+..
T Consensus 17 ~~~~~~~rERh----CP~~~~--------~~~CLVp~P~---gYk--~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~ 79 (506)
T PF03141_consen 17 SRERMEHRERH----CPPPEE--------RLRCLVPPPK---GYK--TPIPWPKSRDYIWYANVPHTKLAEEKADQNWVR 79 (506)
T ss_pred CcccccEeecc----CcCCCC--------CCccccCCCc---cCC--CCCCCCcccceeeecccCchHHhhhccccccee
Confidence 44566778888 887554 7999999998 457 799999999 8888888761
Q ss_pred -c--hhhccccchhHHHHHHHhhhhccc----c--CCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHH
Q 017983 191 -S--EEAFNKDTTHWYALVSDVYVGGLA----I--NWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII 260 (363)
Q Consensus 191 -~--~e~F~~~~~~W~~~~~~~y~~~l~----i--~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a 260 (363)
. .-.|+..+..+.+.+.+ |++++. + ..+.+|++||+|||+|+||++|.+++|.+|++.+.|.+ .++++|
T Consensus 80 ~~gd~~~FPgggt~F~~Ga~~-Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfa 158 (506)
T PF03141_consen 80 VEGDKFRFPGGGTMFPHGADH-YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFA 158 (506)
T ss_pred ecCCEEEeCCCCccccCCHHH-HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhh
Confidence 1 22689999999988886 886543 3 55789999999999999999999999999999999998 899999
Q ss_pred HhcCceeeeccccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC----------HHHHHH
Q 017983 261 FDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT----------LEMINK 329 (363)
Q Consensus 261 ~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~----------~~~~~~ 329 (363)
.|||+..++....+.+|||| ++||+|||+.|+..|....++ +|.|++|||||||||+++-. .+.+++
T Consensus 159 leRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~--~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~ 236 (506)
T PF03141_consen 159 LERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGF--LLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNA 236 (506)
T ss_pred hhcCcchhhhhhccccccCCccchhhhhcccccccchhcccc--eeehhhhhhccCceEEecCCcccccchHHHHHHHHH
Confidence 99998544443335789999 999999999999999877665 99999999999999999843 468999
Q ss_pred HHHHHHhCCceeeeecceEEEEEeccCC
Q 017983 330 LKPVLHSLQWSTNIYHDQFLVGKKGFWR 357 (363)
Q Consensus 330 i~~l~~~l~W~~~~~~~~~li~~K~~w~ 357 (363)
|++++++|||+..+++++++||||+.=.
T Consensus 237 ~~~l~~~lCW~~va~~~~~aIwqKp~~~ 264 (506)
T PF03141_consen 237 MEDLAKSLCWKKVAEKGDTAIWQKPTNN 264 (506)
T ss_pred HHHHHHHHHHHHheeeCCEEEEeccCCc
Confidence 9999999999999999999999998743
No 3
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.83 E-value=1.3e-20 Score=193.15 Aligned_cols=273 Identities=15% Similarity=0.200 Sum_probs=155.6
Q ss_pred CCCCHHHHHHHHHcC--C-Cceeeeccc--CCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeCC
Q 017983 6 KDEHEAQIQFALERG--I-PAILSVIGT--QKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSATP 79 (363)
Q Consensus 6 ~D~~~~qvq~A~erg--~-p~~~~~~~~--~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~~ 79 (363)
-|.++.+++.|.++. . .+.+.+.++ ..+||++++||+|+|+.+++|++++ ...++.++.|+|||||++++....
T Consensus 65 iD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 65 LDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred EeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 378899999887652 2 244555565 3689999999999999998887653 257999999999999999997432
Q ss_pred CCCC-------Chhh---HHHHHHHHHH--Hhh---cceEEEEEecCCCceeEEEEecCCCCh-hcccccCCCCCCCCCC
Q 017983 80 VYRH-------DDRH---RSVWNAMVNL--TES---MCWKAVARSVDSNRIGFVIYQKPVSYS-CYKNREENTPPLCDGK 143 (363)
Q Consensus 80 ~~~~-------~~e~---~~~~~~~~~l--~~~---~cw~~~~~~~~~~~~~~~i~~k~~~~~-c~~~~~~~~~~~C~~~ 143 (363)
.... .+.. ...|..+-.- ... .-|.+..-...+ +.-|.+|.+|. -|.+..+. +-.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~ 217 (475)
T PLN02336 145 FHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNSFELSLVGCKC----IGAYVKNKKNQNQICWLWQK---VSSTN 217 (475)
T ss_pred CCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCEEEEEEEEeec----hhhhhhccCCcceEEEEEEe---ecCCc
Confidence 1111 1111 1223222111 011 112222221111 34466666542 22221111 11000
Q ss_pred CCCCCCCccccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhccccchhHHHHHH--HhhhhccccCCCCC
Q 017983 144 NNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPPDSEEAFNKDTTHWYALVS--DVYVGGLAINWSSV 221 (363)
Q Consensus 144 ~~~~~~wy~~~~~Cl~~~p~~~~~~~~~~p~~WP~rl~~~~~~l~~~~~e~F~~~~~~W~~~~~--~~y~~~l~i~~~~~ 221 (363)
. .....++-++ .| .++.+. ..+.|-..+..+...+. +..++.+.+. +.
T Consensus 218 ~-------~~~~~~~~~~-----~y--------------~~~~i~--~~~~f~g~~~~v~~~v~~te~l~~~~~~~--~~ 267 (475)
T PLN02336 218 D-------KGFQRFLDNV-----QY--------------KSSGIL--RYERVFGEGFVSTGGLETTKEFVDKLDLK--PG 267 (475)
T ss_pred c-------hhHHHHhhhh-----cc--------------ccccHH--HHHHHhCCCCCCCchHHHHHHHHHhcCCC--CC
Confidence 0 1122222210 00 000010 01111111111111111 1133333333 34
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----eee-eccccccCCCCC-CCcceeeeccccc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IGM-YHDWCESFNTYP-RTYDLLHSSFLLS 293 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----~~~-~~d~~e~~lpfp-~sFDlVh~~~~l~ 293 (363)
.+|||+|||+|.++..|++.. ...++++|.+ +|+..|.++.. +.+ ..|. . .+||| ++||+|+|..++.
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~-~-~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADC-T-KKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCc-c-cCCCCCCCEEEEEECCccc
Confidence 699999999999999888753 1257888988 89988876531 222 2342 2 36888 8999999999999
Q ss_pred cccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 294 DVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
|+++ .+.+|.|+.|+|||||.++|.|
T Consensus 344 h~~d---~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 344 HIQD---KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred ccCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 9874 5789999999999999999986
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.77 E-value=9.9e-19 Score=165.14 Aligned_cols=118 Identities=26% Similarity=0.341 Sum_probs=94.9
Q ss_pred ccchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc------eeee
Q 017983 197 KDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL------IGMY 269 (363)
Q Consensus 197 ~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl------~~~~ 269 (363)
..++.|++.... .+++. +..+|||+|||||.++..+++... ...|+++|.+ +||.++++|.. +..+
T Consensus 34 g~~~~Wr~~~i~----~~~~~--~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv 106 (238)
T COG2226 34 GLHRLWRRALIS----LLGIK--PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFV 106 (238)
T ss_pred cchHHHHHHHHH----hhCCC--CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEE
Confidence 466889987764 23333 456999999999999999998643 4578999999 99999999954 2233
Q ss_pred ccccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH
Q 017983 270 HDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE 325 (363)
Q Consensus 270 ~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~ 325 (363)
+..++ .|||| +|||+|.+++.|++++ +++.+|+||.|||||||.+++.|...
T Consensus 107 ~~dAe-~LPf~D~sFD~vt~~fglrnv~---d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 107 VGDAE-NLPFPDNSFDAVTISFGLRNVT---DIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred Eechh-hCCCCCCccCEEEeeehhhcCC---CHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 44455 59999 9999999999999876 57899999999999999999998643
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.72 E-value=9.5e-18 Score=158.14 Aligned_cols=118 Identities=20% Similarity=0.297 Sum_probs=76.3
Q ss_pred ccchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc------eeee
Q 017983 197 KDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL------IGMY 269 (363)
Q Consensus 197 ~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl------~~~~ 269 (363)
..++.|++.+.+ .+ ... +..+|||+|||||.++..|++.......|+++|.+ +||+.+.+|.. +..+
T Consensus 30 g~~~~wr~~~~~-~~---~~~--~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v 103 (233)
T PF01209_consen 30 GQDRRWRRKLIK-LL---GLR--PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFV 103 (233)
T ss_dssp -------SHHHH-HH---T----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEE
T ss_pred cHHHHHHHHHHh-cc---CCC--CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEE
Confidence 456889987765 22 223 34599999999999999998753233468899999 99999988732 3334
Q ss_pred ccccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983 270 HDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 324 (363)
Q Consensus 270 ~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 324 (363)
...++ .+||+ +|||+|.|++++++++ +...+|.||+|||||||+++|.|..
T Consensus 104 ~~da~-~lp~~d~sfD~v~~~fglrn~~---d~~~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 104 QGDAE-DLPFPDNSFDAVTCSFGLRNFP---DRERALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp E-BTT-B--S-TT-EEEEEEES-GGG-S---SHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCHH-HhcCCCCceeEEEHHhhHHhhC---CHHHHHHHHHHHcCCCeEEEEeecc
Confidence 44455 49999 9999999999999776 4688999999999999999999854
No 6
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.65 E-value=1.8e-16 Score=124.81 Aligned_cols=89 Identities=27% Similarity=0.435 Sum_probs=69.7
Q ss_pred EEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcCc---eeeeccccccCCCCC-CCcceeeecccccccccc
Q 017983 225 MDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR 298 (363)
Q Consensus 225 LDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~ 298 (363)
||+|||+|.++..|+++ +. +++++|.+ ++++.+.++.. ........+ .+||+ ++||+|++..+++|+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~-~l~~~~~sfD~v~~~~~~~~~~-- 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNEGVSFRQGDAE-DLPFPDNSFDVVFSNSVLHHLE-- 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTSTEEEEESBTT-SSSS-TT-EEEEEEESHGGGSS--
T ss_pred CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhcccccCchheeehHH-hCccccccccccccccceeecc--
Confidence 89999999999999998 43 46778888 88998888764 223333233 58999 9999999999999983
Q ss_pred CCHHHHHHHHhHhccCCeEEEE
Q 017983 299 CDIADVAVEMDRILRPGGYVLV 320 (363)
Q Consensus 299 ~~~~~~L~Em~RVLRPGG~lii 320 (363)
+...++.|+.|+|||||+++|
T Consensus 75 -~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 -DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -HHHHHHHHHHHHEEEEEEEEE
T ss_pred -CHHHHHHHHHHHcCcCeEEeC
Confidence 468899999999999999986
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.62 E-value=1.4e-15 Score=145.17 Aligned_cols=98 Identities=21% Similarity=0.246 Sum_probs=77.8
Q ss_pred CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcCc---------eeeeccccccCCCCC-CCcceeee
Q 017983 221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL---------IGMYHDWCESFNTYP-RTYDLLHS 288 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rgl---------~~~~~d~~e~~lpfp-~sFDlVh~ 288 (363)
..+|||+|||+|.++..|+++ +.. ..|+++|.+ +|++.|.+|.. +......++ .+||+ ++||+|++
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~-~lp~~~~sfD~V~~ 151 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDAT-DLPFDDCYFDAITM 151 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccc-cCCCCCCCEeEEEE
Confidence 469999999999999888864 211 257888999 89999876621 223333333 48999 99999999
Q ss_pred ccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 289 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 289 ~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
+++++|+++ +..+|.|+.|+|||||++++.|.
T Consensus 152 ~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 152 GYGLRNVVD---RLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ecccccCCC---HHHHHHHHHHHcCcCcEEEEEEC
Confidence 999998864 67899999999999999999874
No 8
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.50 E-value=9.6e-14 Score=131.35 Aligned_cols=121 Identities=19% Similarity=0.227 Sum_probs=90.8
Q ss_pred CCCCCceEEEecccccHHHHHhhcCCCe-----EEEEeecCCc-chHHHHHhcC----c-----eeeeccccccCCCCC-
Q 017983 217 NWSSVRNVMDMNASYGGFAAALIDQPLW-----VMNVVPIDAP-DTLSIIFDRG----L-----IGMYHDWCESFNTYP- 280 (363)
Q Consensus 217 ~~~~~r~VLDvGCG~G~faa~L~~~~v~-----v~~v~~~d~s-~~L~~a~~Rg----l-----~~~~~d~~e~~lpfp- 280 (363)
.++...+||||+||||..|-.+.++--. .-+|+..|.+ +||.++..|. + ...+...+| .||||
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE-~LpFdd 175 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE-DLPFDD 175 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc-cCCCCC
Confidence 3455589999999999998888765211 1467788988 8999887775 2 112222345 59999
Q ss_pred CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHHHH-HHHHHHHHhCCcee
Q 017983 281 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMI-NKLKPVLHSLQWST 341 (363)
Q Consensus 281 ~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~l~~~l~W~~ 341 (363)
++||+...++.++.+++ ++++|+|++|||||||.|.+.+.+.+- ..++.+.+.--.++
T Consensus 176 ~s~D~yTiafGIRN~th---~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVTH---IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred CcceeEEEecceecCCC---HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 99999999999998775 688999999999999999999887654 45666555444433
No 9
>PRK05785 hypothetical protein; Provisional
Probab=99.49 E-value=1.1e-13 Score=129.71 Aligned_cols=107 Identities=20% Similarity=0.249 Sum_probs=80.4
Q ss_pred cchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccC
Q 017983 198 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESF 276 (363)
Q Consensus 198 ~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~ 276 (363)
.+..|++.+.. .+.... . ...+|||+|||||.++..|++.. ...|+++|.+ +||+.+.++.. .++..++ .
T Consensus 33 ~~~~wr~~~~~-~l~~~~-~--~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~~--~~~~d~~-~ 103 (226)
T PRK05785 33 QDVRWRAELVK-TILKYC-G--RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVADD--KVVGSFE-A 103 (226)
T ss_pred CcHHHHHHHHH-HHHHhc-C--CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhccc--eEEechh-h
Confidence 34678876654 232111 1 23599999999999999998763 1357889999 99999988753 2232334 4
Q ss_pred CCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCe
Q 017983 277 NTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGG 316 (363)
Q Consensus 277 lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG 316 (363)
+||+ ++||+|+++++++|+. +++.+|.||.|||||++
T Consensus 104 lp~~d~sfD~v~~~~~l~~~~---d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 104 LPFRDKSFDVVMSSFALHASD---NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCCCEEEEEecChhhccC---CHHHHHHHHHHHhcCce
Confidence 8999 9999999999998875 46889999999999953
No 10
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.44 E-value=1.4e-13 Score=118.95 Aligned_cols=94 Identities=23% Similarity=0.474 Sum_probs=74.4
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-CCcceeeeccccccccc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ 297 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~ 297 (363)
...+|||+|||+|.++..|++.+. .++++|.+ .+++. +.......+ ....+++ ++||+|+|..+|+|+++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFD--AQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEE--CHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhh--hhhhhccccchhhHhhHHHHhhccc
Confidence 356999999999999999988876 57788888 67766 333222221 1234456 99999999999999985
Q ss_pred cCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983 298 RCDIADVAVEMDRILRPGGYVLVQDTL 324 (363)
Q Consensus 298 ~~~~~~~L~Em~RVLRPGG~lii~D~~ 324 (363)
+..+|.+|.|+|||||++++.+..
T Consensus 94 ---~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 94 ---PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 688999999999999999999864
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.43 E-value=3e-13 Score=133.90 Aligned_cols=96 Identities=18% Similarity=0.235 Sum_probs=74.9
Q ss_pred CCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeec
Q 017983 220 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSS 289 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~ 289 (363)
...+|||+|||+|.++..|+++ +. .|+++|.+ .|++.+.++ |+ +......++ .+||+ ++||+|++.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~-~~~~~~~~FD~V~s~ 193 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL-NQPFEDGQFDLVWSM 193 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc-cCCCCCCCccEEEEC
Confidence 4568999999999999999875 33 46777888 788766553 33 222322233 47899 999999999
Q ss_pred cccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
.+++|+++ ...++.|+.|+|||||+++|.+
T Consensus 194 ~~~~h~~d---~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMPD---KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 99999874 5789999999999999999975
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.43 E-value=2.6e-13 Score=133.78 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=77.1
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c---eeeeccccccCCCCC-CCcceeeeccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L---IGMYHDWCESFNTYP-RTYDLLHSSFL 291 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l---~~~~~d~~e~~lpfp-~sFDlVh~~~~ 291 (363)
..+|||+|||+|.++..|+..+. .|+++|.+ +|++.|.++. . +...+..++ .+|++ ++||+|+|..+
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae-~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAE-KLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHH-HhhhccCCCCEEEEhhH
Confidence 35899999999999999987654 47788988 8999887652 1 223333233 36777 89999999999
Q ss_pred cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
|+|+.+ ...+|.|+.|+|||||.++|.+.
T Consensus 208 LeHv~d---~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 208 IEHVAN---PAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HHhcCC---HHHHHHHHHHHcCCCcEEEEEEC
Confidence 999875 47899999999999999999864
No 13
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.42 E-value=7.5e-13 Score=122.73 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=82.4
Q ss_pred cchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c--eeeec
Q 017983 198 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L--IGMYH 270 (363)
Q Consensus 198 ~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l--~~~~~ 270 (363)
....|++.+.. .+.+++ ..+|||+|||+|.++..|++.......++++|.+ +|++.+.++. + +..+.
T Consensus 29 ~~~~~~~~~l~----~l~~~~--~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~ 102 (231)
T TIGR02752 29 RHKKWRKDTMK----RMNVQA--GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVH 102 (231)
T ss_pred chHHHHHHHHH----hcCCCC--CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEE
Confidence 45566654433 233333 3599999999999999988641111257788887 8887776552 2 23333
Q ss_pred cccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 271 DWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 271 d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
..++ .+|++ ++||+|++..+++|+++ ...+|.|+.|+|||||++++.+.
T Consensus 103 ~d~~-~~~~~~~~fD~V~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 103 GNAM-ELPFDDNSFDYVTIGFGLRNVPD---YMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred echh-cCCCCCCCccEEEEecccccCCC---HHHHHHHHHHHcCcCeEEEEEEC
Confidence 3333 37888 99999999999988754 57899999999999999998764
No 14
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.42 E-value=8.7e-13 Score=124.20 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=76.6
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCC-CCcceeeecccccccc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVT 296 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~ 296 (363)
...+|||+|||+|.++..|+..+. .++++|.+ +|++.+.++.. ...+....+ .+||+ ++||+|+++.++++..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~V~s~~~l~~~~ 117 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIE-SLPLATATFDLAWSNLAVQWCG 117 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcc-cCcCCCCcEEEEEECchhhhcC
Confidence 456899999999999999987653 46788988 89999988853 222222233 47898 8999999998888654
Q ss_pred ccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 297 QRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 297 ~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
++..+|.|+.|+|||||.++++.
T Consensus 118 ---d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 118 ---NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred ---CHHHHHHHHHHHcCCCeEEEEEe
Confidence 46889999999999999999985
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.40 E-value=5.6e-13 Score=126.20 Aligned_cols=97 Identities=22% Similarity=0.231 Sum_probs=76.0
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCCCCcceeeecccccccccc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR 298 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~ 298 (363)
...+|||+|||+|.++..|+.... ...|+++|.+ .|++.+.++++.....| .+. ++..++||+|+|+.+|+|+++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~~~~~~d-~~~-~~~~~~fD~v~~~~~l~~~~d- 104 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGVDARTGD-VRD-WKPKPDTDVVVSNAALQWVPE- 104 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCCcEEEcC-hhh-CCCCCCceEEEEehhhhhCCC-
Confidence 346999999999999999987621 1247888988 89999998875333333 232 432389999999999999864
Q ss_pred CCHHHHHHHHhHhccCCeEEEEEc
Q 017983 299 CDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 299 ~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
...++.++.|+|||||++++..
T Consensus 105 --~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 105 --HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred --HHHHHHHHHHhCCCCcEEEEEc
Confidence 5789999999999999999963
No 16
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.40 E-value=6.2e-13 Score=127.19 Aligned_cols=105 Identities=19% Similarity=0.254 Sum_probs=79.3
Q ss_pred ccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc----eeeeccccccCCCCC-CCccee
Q 017983 213 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMYHDWCESFNTYP-RTYDLL 286 (363)
Q Consensus 213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl----~~~~~d~~e~~lpfp-~sFDlV 286 (363)
.+.+.+ ..+|||+|||+|.++..|+... ...|+++|.+ +|++.+.++.. +......++ ..||+ ++||+|
T Consensus 47 ~l~l~~--~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~-~~~~~~~~FD~V 121 (263)
T PTZ00098 47 DIELNE--NSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDIL-KKDFPENTFDMI 121 (263)
T ss_pred hCCCCC--CCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcc-cCCCCCCCeEEE
Confidence 344443 4599999999999999887642 1257888888 89988887632 333322223 37898 999999
Q ss_pred eeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
++..++.|+.. .+...+|.|+.|+|||||++++.|.
T Consensus 122 ~s~~~l~h~~~-~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 122 YSRDAILHLSY-ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEhhhHHhCCH-HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999988752 2467899999999999999999874
No 17
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.38 E-value=2.2e-12 Score=118.12 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=90.2
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--e-eeeccccccCCCCCCCcceeeecccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--I-GMYHDWCESFNTYPRTYDLLHSSFLL 292 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~-~~~~d~~e~~lpfp~sFDlVh~~~~l 292 (363)
..+|||+|||+|.++..|++++. +|+++|.+ .|++.+.++ ++ + ....|.. .++++++||+|+|..++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~--~~~~~~~fD~I~~~~~~ 105 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLN--NLTFDGEYDFILSTVVL 105 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChh--hCCcCCCcCEEEEecch
Confidence 35899999999999999998764 46777888 788766543 32 1 2223322 24566789999999999
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEEcCH-----------H---HHHHHHHHHHhCCceeeeecceEEEEEeccCCC
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-----------E---MINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRP 358 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-----------~---~~~~i~~l~~~l~W~~~~~~~~~li~~K~~w~~ 358 (363)
+|++ ......++.++.|+|||||++++.+.. . -..++.+... .|+.....+.+....|+.|..
T Consensus 106 ~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~~~~~~~~~~~g 182 (197)
T PRK11207 106 MFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNEDVGELHRTDANG 182 (197)
T ss_pred hhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCCHHhhcccccCC
Confidence 8765 345788999999999999996553211 0 1233444444 587776666666677766654
Q ss_pred C
Q 017983 359 T 359 (363)
Q Consensus 359 ~ 359 (363)
.
T Consensus 183 ~ 183 (197)
T PRK11207 183 N 183 (197)
T ss_pred C
Confidence 4
No 18
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.36 E-value=1.4e-12 Score=106.94 Aligned_cols=98 Identities=24% Similarity=0.331 Sum_probs=72.4
Q ss_pred ceEEEecccccHHHHHhhc--CCCeEEEEeecCCc-chHHHHHhcC----c---eeeeccccccCCCCCCCcceeeecc-
Q 017983 222 RNVMDMNASYGGFAAALID--QPLWVMNVVPIDAP-DTLSIIFDRG----L---IGMYHDWCESFNTYPRTYDLLHSSF- 290 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~--~~v~v~~v~~~d~s-~~L~~a~~Rg----l---~~~~~d~~e~~lpfp~sFDlVh~~~- 290 (363)
.+|||+|||+|.++.+|++ .+.. ++++|.+ .|++.+.++- . +..++........+...||+|++..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCC
Confidence 5899999999999999998 5544 6777888 7888877774 1 3334332211233447899999999
Q ss_pred ccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
+++++.+......+|.++.+.|||||+++|.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55544433456789999999999999999975
No 19
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.35 E-value=4.6e-12 Score=115.86 Aligned_cols=130 Identities=16% Similarity=0.235 Sum_probs=89.5
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-e-eeeccccccCCCCCCCcceeeeccccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-I-GMYHDWCESFNTYPRTYDLLHSSFLLS 293 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~-~~~~d~~e~~lpfp~sFDlVh~~~~l~ 293 (363)
..+|||+|||+|.++.+|++++. .|+++|.+ .|++.+.++ |+ + ....+. . ..+++++||+|+++.+|+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~-~~~~~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDI-N-AAALNEDYDFIFSTVVFM 105 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-h-hccccCCCCEEEEecccc
Confidence 35899999999999999998763 47788888 788765443 33 1 112221 1 245567899999999999
Q ss_pred cccccCCHHHHHHHHhHhccCCeEEEEEcC-----------HH---HHHHHHHHHHhCCceeeeecceEEEEEeccCCC
Q 017983 294 DVTQRCDIADVAVEMDRILRPGGYVLVQDT-----------LE---MINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRP 358 (363)
Q Consensus 294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----------~~---~~~~i~~l~~~l~W~~~~~~~~~li~~K~~w~~ 358 (363)
|++. .+...++.++.|+|||||+++|.+. .. -..++.++.. .|+.....|.+..+.|+-|..
T Consensus 106 ~~~~-~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~~~~~ 181 (195)
T TIGR00477 106 FLQA-GRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHATDANG 181 (195)
T ss_pred cCCH-HHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeecccccccccccCC
Confidence 8753 3567899999999999999665421 11 1234544444 388777776666666665543
No 20
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.35 E-value=2.2e-12 Score=122.23 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=74.7
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeeccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSFL 291 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~~ 291 (363)
..+|||+|||+|.++..|++.+. .|+++|.+ +|++.|.++ |+ +.++....+...+++ ++||+|+|..+
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 46999999999999999998764 46788888 899888765 32 222332222223466 99999999999
Q ss_pred cccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
|+|+.+ +..+|.++.|+|||||++++..
T Consensus 122 l~~~~~---~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 122 LEWVAD---PKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHhhCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 999864 4689999999999999998864
No 21
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.32 E-value=7.3e-12 Score=123.13 Aligned_cols=96 Identities=14% Similarity=0.034 Sum_probs=69.6
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHH--hc-----CceeeeccccccCCCCCCCcceeeecccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIF--DR-----GLIGMYHDWCESFNTYPRTYDLLHSSFLL 292 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~--~R-----gl~~~~~d~~e~~lpfp~sFDlVh~~~~l 292 (363)
.++|||+|||+|.++..++..+.. .|+++|.+ .|+..+. ++ ..+.......+ .+|+..+||+|+|..++
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie-~lp~~~~FD~V~s~gvL 198 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIE-QLHELYAFDTVFSMGVL 198 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHH-HCCCCCCcCEEEEcchh
Confidence 469999999999999888877643 36777877 6765321 11 11222211122 36656789999999999
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
.|+.+ +..+|.|++|+|||||.+++.+
T Consensus 199 ~H~~d---p~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 199 YHRKS---PLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred hccCC---HHHHHHHHHHhcCCCCEEEEEE
Confidence 99864 5789999999999999999863
No 22
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.31 E-value=2.9e-11 Score=110.64 Aligned_cols=133 Identities=16% Similarity=0.207 Sum_probs=93.0
Q ss_pred hhHHHHHHHh-hhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeecc
Q 017983 200 THWYALVSDV-YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHD 271 (363)
Q Consensus 200 ~~W~~~~~~~-y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d 271 (363)
..|++.+.+. ++.. .++. ..+|||+|||+|.++..++... ....|+++|.+ +|++.+.++ ++ +..+..
T Consensus 27 ~~~~~~~~d~l~l~~-~l~~--g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~ 102 (187)
T PRK00107 27 ELWERHILDSLAIAP-YLPG--GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG 102 (187)
T ss_pred HHHHHHHHHHHHHHh-hcCC--CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec
Confidence 4787766431 1111 1222 4689999999999888887521 12257788888 788766543 33 333443
Q ss_pred ccccCCCCCCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeeee
Q 017983 272 WCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY 344 (363)
Q Consensus 272 ~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~ 344 (363)
.++. ++..++||+|+|... .+++.++.++.|+|||||++++.+.......+.++++.+.|.....
T Consensus 103 d~~~-~~~~~~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 103 RAEE-FGQEEKFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred cHhh-CCCCCCccEEEEccc-------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeee
Confidence 3333 333579999998642 2467899999999999999999998888899999999999986544
No 23
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.29 E-value=1.1e-12 Score=105.93 Aligned_cols=90 Identities=23% Similarity=0.325 Sum_probs=54.7
Q ss_pred EEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc------eeeecccccc-CCCCC-CCcceeeeccccccc
Q 017983 225 MDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL------IGMYHDWCES-FNTYP-RTYDLLHSSFLLSDV 295 (363)
Q Consensus 225 LDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl------~~~~~d~~e~-~lpfp-~sFDlVh~~~~l~~~ 295 (363)
||+|||+|.++..|.+.. ....++++|.| .|++.+.+|-. .....-.... ..+.+ ++||+|++..+|+|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 899999999999998763 34568888988 88866555521 1111110111 12223 699999999999998
Q ss_pred cccCCHHHHHHHHhHhccCCeEE
Q 017983 296 TQRCDIADVAVEMDRILRPGGYV 318 (363)
Q Consensus 296 ~~~~~~~~~L~Em~RVLRPGG~l 318 (363)
.++..+|..+.++|||||.+
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 35789999999999999986
No 24
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.29 E-value=1.1e-11 Score=122.12 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=70.6
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHH--Hhc--C---ceeeeccccccCCCCCCCcceeeecccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII--FDR--G---LIGMYHDWCESFNTYPRTYDLLHSSFLL 292 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a--~~R--g---l~~~~~d~~e~~lpfp~sFDlVh~~~~l 292 (363)
.++|||+|||+|.++..|+..+.. .|+++|.+ .|+..+ ..+ + -+.+.....+ .+|++++||+|+|..++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e-~lp~~~~FD~V~s~~vl 199 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE-QLPALKAFDTVFSMGVL 199 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH-HCCCcCCcCEEEECChh
Confidence 469999999999999999887533 26777877 566432 111 1 1222322223 36778999999999999
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
+|.. ++..+|.++.|+|||||.+++.+
T Consensus 200 ~H~~---dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 200 YHRR---SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred hccC---CHHHHHHHHHHhcCCCcEEEEEE
Confidence 9875 46789999999999999999863
No 25
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.28 E-value=2.2e-12 Score=122.09 Aligned_cols=70 Identities=26% Similarity=0.349 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHcCCC-----ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983 6 KDEHEAQIQFALERGIP-----AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~p-----~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s 76 (363)
-|.|++|+..|++|-.. +.+.+.+|+.|||||+|||+|.|+..+.+.++ ..++|+||.|||||||.+++.
T Consensus 81 ~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d-~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 81 LDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTD-IDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred EECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCC-HHHHHHHHHHhhcCCeEEEEE
Confidence 48999999999999544 55678889999999999999999999988774 679999999999999988875
No 26
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.28 E-value=1.6e-11 Score=115.97 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=73.6
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCCCCcceeeeccccccccc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ 297 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~ 297 (363)
+..+|||+|||+|.++..|++.. ....|+++|.+ .|++.+.++.- +.......+ .++.+++||+|+++.+|+|+.+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~-~~~~~~~fD~v~~~~~l~~~~d 108 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIA-SWQPPQALDLIFANASLQWLPD 108 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchh-ccCCCCCccEEEEccChhhCCC
Confidence 34699999999999999998752 12257788888 89998887742 222222222 2332389999999999998764
Q ss_pred cCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 298 RCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 298 ~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
...+|.++.|+|||||++++..
T Consensus 109 ---~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 109 ---HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ---HHHHHHHHHHhcCCCcEEEEEC
Confidence 5789999999999999999963
No 27
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.28 E-value=1.5e-11 Score=118.00 Aligned_cols=130 Identities=17% Similarity=0.198 Sum_probs=89.5
Q ss_pred hhhccccchhHHHHHHHhhhhcc--ccCCCCCceEEEecccccH----HHHHhhcCC----CeEEEEeecCCc-chHHHH
Q 017983 192 EEAFNKDTTHWYALVSDVYVGGL--AINWSSVRNVMDMNASYGG----FAAALIDQP----LWVMNVVPIDAP-DTLSII 260 (363)
Q Consensus 192 ~e~F~~~~~~W~~~~~~~y~~~l--~i~~~~~r~VLDvGCG~G~----faa~L~~~~----v~v~~v~~~d~s-~~L~~a 260 (363)
...|-.+...|...... .+..+ ....++..+|+|+|||+|. +|..|++.. .+...|+++|.+ .||+.|
T Consensus 70 ~T~FfR~~~~~~~l~~~-vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~A 148 (264)
T smart00138 70 ETRFFRESKHFEALEEK-VLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKA 148 (264)
T ss_pred CCcccCCcHHHHHHHHH-HhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHH
Confidence 45677788888775543 22211 1112334689999999995 555555531 124578999999 899988
Q ss_pred HhcCc----------------------------------eeeeccccccCCCCC-CCcceeeeccccccccccCCHHHHH
Q 017983 261 FDRGL----------------------------------IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVA 305 (363)
Q Consensus 261 ~~Rgl----------------------------------~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L 305 (363)
.+.-. ....+|.. ..+++ ++||+|+|..+|+|+.+ .....++
T Consensus 149 r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~--~~~~~~~~fD~I~crnvl~yf~~-~~~~~~l 225 (264)
T smart00138 149 RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLL--AESPPLGDFDLIFCRNVLIYFDE-PTQRKLL 225 (264)
T ss_pred HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCC--CCCCccCCCCEEEechhHHhCCH-HHHHHHH
Confidence 76420 11234432 25666 99999999999999964 3457899
Q ss_pred HHHhHhccCCeEEEEEcCHH
Q 017983 306 VEMDRILRPGGYVLVQDTLE 325 (363)
Q Consensus 306 ~Em~RVLRPGG~lii~D~~~ 325 (363)
.++.|+|||||++++.....
T Consensus 226 ~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 226 NRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred HHHHHHhCCCeEEEEECccc
Confidence 99999999999999986543
No 28
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.28 E-value=8.3e-12 Score=120.47 Aligned_cols=102 Identities=21% Similarity=0.403 Sum_probs=69.9
Q ss_pred hhhccccCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHH----HhcCc---eee-eccccccCCCC
Q 017983 210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSII----FDRGL---IGM-YHDWCESFNTY 279 (363)
Q Consensus 210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a----~~Rgl---~~~-~~d~~e~~lpf 279 (363)
+++.+++++| .+|||+|||.|+++.+++++ ++. |+++..| ++.+.+ .++|+ +.+ ..|+ ..+
T Consensus 54 ~~~~~~l~~G--~~vLDiGcGwG~~~~~~a~~~g~~---v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~----~~~ 124 (273)
T PF02353_consen 54 LCEKLGLKPG--DRVLDIGCGWGGLAIYAAERYGCH---VTGITLSEEQAEYARERIREAGLEDRVEVRLQDY----RDL 124 (273)
T ss_dssp HHTTTT--TT---EEEEES-TTSHHHHHHHHHH--E---EEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G----GG-
T ss_pred HHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCcE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec----ccc
Confidence 5667777766 49999999999999999987 665 5556666 666554 45565 222 2232 334
Q ss_pred CCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 280 PRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 280 p~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
+.+||.|++-.+|+|+.. .+...++.+++|+|||||.+++.
T Consensus 125 ~~~fD~IvSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 125 PGKFDRIVSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp --S-SEEEEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred CCCCCEEEEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 569999999999999964 46788999999999999999875
No 29
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.27 E-value=7.7e-12 Score=109.16 Aligned_cols=99 Identities=19% Similarity=0.351 Sum_probs=75.2
Q ss_pred CceEEEecccccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC--CCCCcceeeecc
Q 017983 221 VRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT--YPRTYDLLHSSF 290 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp--fp~sFDlVh~~~ 290 (363)
..+|||+|||+|.++..|++ .+. ...++++|.+ +|++.|.++ ++ +..++...+. ++ |++.||+|++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISNG 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEES
T ss_pred CCEEEEecCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEcC
Confidence 35999999999999999994 221 1237788988 899888774 33 3344333333 55 668999999999
Q ss_pred ccccccccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983 291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 324 (363)
Q Consensus 291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 324 (363)
+++|+.+ ...+|.++.|.|+|||.+++.+..
T Consensus 82 ~l~~~~~---~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPD---PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSH---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccC---HHHHHHHHHHHcCCCcEEEEEECC
Confidence 9987764 467999999999999999999876
No 30
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.26 E-value=1.6e-11 Score=117.14 Aligned_cols=98 Identities=17% Similarity=0.170 Sum_probs=72.1
Q ss_pred CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcC----c--eeeeccccccCCCCC-CCcceeeeccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG----L--IGMYHDWCESFNTYP-RTYDLLHSSFL 291 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rg----l--~~~~~d~~e~~lpfp-~sFDlVh~~~~ 291 (363)
..+|||+|||+|..+..++.. +. ...|+++|.+ +|++.+.++. + +..+....+ .+|++ ++||+|++..+
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~-~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIE-ALPVADNSVDVIISNCV 155 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchh-hCCCCCCceeEEEEcCc
Confidence 469999999999876655542 21 1246788888 8898887752 2 222222223 47888 89999999999
Q ss_pred cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
++|.++ ...++.|+.|+|||||++++.|.
T Consensus 156 ~~~~~d---~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 156 INLSPD---KERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred ccCCCC---HHHHHHHHHHHcCCCcEEEEEEe
Confidence 988754 57799999999999999999763
No 31
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.25 E-value=1.7e-11 Score=121.77 Aligned_cols=116 Identities=14% Similarity=0.071 Sum_probs=84.8
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc---eeeeccccccCCCCC-CCcceeeeccccccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLLSDV 295 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~ 295 (363)
..+|||+|||+|.++..+++.. ....++++|.+ +|++.+.++.. +..++...+ .+||+ ++||+|++..+++|+
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e-~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAE-DLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHH-hCCCCCCceeEEEEcChhhhC
Confidence 4689999999999988887631 11257788888 89998887632 223333233 47898 999999999999988
Q ss_pred cccCCHHHHHHHHhHhccCCeEEEEEcCHH-----------------HHHHHHHHHHhCCcee
Q 017983 296 TQRCDIADVAVEMDRILRPGGYVLVQDTLE-----------------MINKLKPVLHSLQWST 341 (363)
Q Consensus 296 ~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-----------------~~~~i~~l~~~l~W~~ 341 (363)
++ .+.+|.|+.|+|||||++++.+... ..+++.+++++..++.
T Consensus 192 ~d---~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 192 PD---PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred CC---HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeE
Confidence 75 4679999999999999998865311 1355666666666654
No 32
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.25 E-value=1.3e-11 Score=113.92 Aligned_cols=97 Identities=21% Similarity=0.385 Sum_probs=72.8
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCCCCcceeeeccccc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFLLS 293 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~~~l~ 293 (363)
++|||+|||+|.++..+++... ..+++++|.+ +++..+.++ |+ +..+....+ ..|++++||+|++..+++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~-~~~~~~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSA-KDPFPDTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccc-cCCCCCCCCEeehHHHHH
Confidence 3799999999999999887421 1246677777 788777664 33 233332222 246778999999999999
Q ss_pred cccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 294 DVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
|+.+ ...++.++.|+|||||++++.+.
T Consensus 79 ~~~~---~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 79 HIKD---KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred hCCC---HHHHHHHHHHHcCCCCEEEEEEc
Confidence 9864 57899999999999999999864
No 33
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.25 E-value=3.2e-12 Score=100.46 Aligned_cols=70 Identities=24% Similarity=0.386 Sum_probs=58.0
Q ss_pred cCCCCHHHHHHHHHcCCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEE
Q 017983 5 PKDEHEAQIQFALERGIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIW 75 (363)
Q Consensus 5 p~D~~~~qvq~A~erg~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~ 75 (363)
--|.++.+++.|+++..+ ..+...+.+.|||++++||+|+|..+++|+ ++...++.|+.|||||||++++
T Consensus 24 ~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 24 GIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCHHHHHHHHHHHcCcCeEEeC
Confidence 348899999999998544 337778899999999999999999888887 4577999999999999999986
No 34
>PRK08317 hypothetical protein; Provisional
Probab=99.25 E-value=2.4e-11 Score=111.22 Aligned_cols=99 Identities=28% Similarity=0.372 Sum_probs=75.1
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc--Cc---eeeeccccccCCCCC-CCcceeeecccc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR--GL---IGMYHDWCESFNTYP-RTYDLLHSSFLL 292 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R--gl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l 292 (363)
...+|||+|||+|.++..+++.......++++|.+ ++++.+.++ +. +....... ..+|++ ++||+|++..++
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA-DGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc-ccCCCCCCCceEEEEechh
Confidence 34699999999999999988742111257788888 788888776 11 22222211 236788 999999999999
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
+|+.+ ...++.++.++|||||++++.+
T Consensus 98 ~~~~~---~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 98 QHLED---PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hccCC---HHHHHHHHHHHhcCCcEEEEEe
Confidence 99864 5789999999999999999875
No 35
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.24 E-value=9.3e-12 Score=117.22 Aligned_cols=99 Identities=17% Similarity=0.245 Sum_probs=78.0
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCce-eeeccc---cccCCCCC-CCcceeeecccccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-GMYHDW---CESFNTYP-RTYDLLHSSFLLSD 294 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~-~~~~d~---~e~~lpfp-~sFDlVh~~~~l~~ 294 (363)
..+|||+|||-|.++..|+..|. +|+++|.+ +++++|..+... ++..++ ....+-.. .+||+|+|..+++|
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 45899999999999999999884 47899999 899999866541 111111 01124455 79999999999999
Q ss_pred ccccCCHHHHHHHHhHhccCCeEEEEEcCHH
Q 017983 295 VTQRCDIADVAVEMDRILRPGGYVLVQDTLE 325 (363)
Q Consensus 295 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~ 325 (363)
++++ +.++++..+.|||||.+++++.+.
T Consensus 137 v~dp---~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 137 VPDP---ESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred cCCH---HHHHHHHHHHcCCCcEEEEecccc
Confidence 9864 679999999999999999997643
No 36
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.24 E-value=1.2e-11 Score=117.10 Aligned_cols=100 Identities=12% Similarity=0.124 Sum_probs=73.1
Q ss_pred CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcC----c---eeeeccccccCCCCCCCcceeeeccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG----L---IGMYHDWCESFNTYPRTYDLLHSSFL 291 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rg----l---~~~~~d~~e~~lpfp~sFDlVh~~~~ 291 (363)
..+|||+|||+|.++..|+.. ......++++|.+ +|++.+.++- . +..+....+ .+|+ ..||+|++..+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~-~~~~-~~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR-DIAI-ENASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChh-hCCC-CCCCEEehhhH
Confidence 358999999999998888752 0011257888988 8999887762 1 223322222 2333 56999999999
Q ss_pred cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
++|++. .....++.||.|+|||||.+++.|.
T Consensus 135 l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 135 LQFLEP-SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHhCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 999864 3467899999999999999999873
No 37
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.24 E-value=3.1e-11 Score=110.83 Aligned_cols=98 Identities=18% Similarity=0.275 Sum_probs=75.2
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc--eeeeccccccCCCCC-CCcceeeecccccccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVT 296 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~ 296 (363)
..+|||+|||+|.++..|++.... ..++++|.+ .++..+.++.. +..+....+ ..|++ ++||+|++..+++|..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLSENVQFICGDAE-KLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcCCCCeEEecchh-hCCCCCCceeEEEEhhhhhhcc
Confidence 368999999999999999876421 236778888 78888877642 222222223 36778 9999999999999875
Q ss_pred ccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 297 QRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 297 ~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
+ ...+|.++.|+|||||++++.+.
T Consensus 113 ~---~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 113 D---LSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred C---HHHHHHHHHHHcCCCcEEEEEeC
Confidence 3 57899999999999999999753
No 38
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.24 E-value=1.6e-11 Score=115.12 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=73.3
Q ss_pred CceEEEecccccHHHHHhhcCC-CeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCCCCcceeeeccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFL 291 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~-v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~~~ 291 (363)
..+|||+|||+|.++..|++.. .....++++|.+ +|++.|.++ +. +..++.... .+++ ..||+|+++.+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~-~~~~-~~~d~v~~~~~ 131 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIR-HVEI-KNASMVILNFT 131 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChh-hCCC-CCCCEEeeecc
Confidence 4589999999999998887641 112357888888 899888765 11 222322111 2333 56999999999
Q ss_pred cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
++|+++. +...+|.++.|+|||||.++++|.
T Consensus 132 l~~~~~~-~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 132 LQFLPPE-DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhhCCHH-HHHHHHHHHHHhcCCCeEEEEeec
Confidence 9998643 467899999999999999999974
No 39
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.22 E-value=3.5e-12 Score=103.86 Aligned_cols=91 Identities=21% Similarity=0.309 Sum_probs=66.6
Q ss_pred EEEecccccHHHHHhhcCC--CeEEEEeecCCc-chHHHHHhcCc-----eeeeccccccCCCCC-CCcceeeeccc-cc
Q 017983 224 VMDMNASYGGFAAALIDQP--LWVMNVVPIDAP-DTLSIIFDRGL-----IGMYHDWCESFNTYP-RTYDLLHSSFL-LS 293 (363)
Q Consensus 224 VLDvGCG~G~faa~L~~~~--v~v~~v~~~d~s-~~L~~a~~Rgl-----~~~~~d~~e~~lpfp-~sFDlVh~~~~-l~ 293 (363)
|||+|||+|..+..|++.. ..-..+.++|.+ +|+..+.++.. +..++..++ .+++. ++||+|+|+.. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~-~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADAR-DLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTT-CHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHh-HCcccCCCeeEEEEcCCccC
Confidence 7999999999999888642 111457888999 89999888862 233443343 37777 89999999655 88
Q ss_pred cccccCCHHHHHHHHhHhccCCe
Q 017983 294 DVTQRCDIADVAVEMDRILRPGG 316 (363)
Q Consensus 294 ~~~~~~~~~~~L~Em~RVLRPGG 316 (363)
|+.+ ...+.++.++.++|||||
T Consensus 80 ~~~~-~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSP-EELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSH-HHHHHHHHHHHHTEEEEE
T ss_pred CCCH-HHHHHHHHHHHHHhCCCC
Confidence 8754 467899999999999998
No 40
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.21 E-value=3.2e-11 Score=123.84 Aligned_cols=98 Identities=19% Similarity=0.357 Sum_probs=75.9
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-c---eeee-ccccccCCCCC-CCcceeeeccccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-L---IGMY-HDWCESFNTYP-RTYDLLHSSFLLS 293 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-l---~~~~-~d~~e~~lpfp-~sFDlVh~~~~l~ 293 (363)
..+|||+|||+|.++..|++... .|+++|.+ +|++.+.++. . +..+ .|.....+|+| ++||+|+|..+++
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 45899999999999999998643 46788888 8887765432 1 2222 23211247888 9999999999999
Q ss_pred cccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 294 DVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
|+++. .+..+|.|+.|+|||||++++.|
T Consensus 115 ~l~~~-~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 115 YLSDK-EVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred hCCHH-HHHHHHHHHHHhcCCCeEEEEEe
Confidence 98753 46789999999999999999986
No 41
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.20 E-value=3.9e-11 Score=114.98 Aligned_cols=91 Identities=18% Similarity=0.274 Sum_probs=67.8
Q ss_pred CceEEEecccccHHHHHhhcCCC--eEEEEeecCCc-chHHHHHhcCc-ee-eeccccccCCCCC-CCcceeeecccccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPL--WVMNVVPIDAP-DTLSIIFDRGL-IG-MYHDWCESFNTYP-RTYDLLHSSFLLSD 294 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v--~v~~v~~~d~s-~~L~~a~~Rgl-~~-~~~d~~e~~lpfp-~sFDlVh~~~~l~~ 294 (363)
..+|||+|||+|.++..|++... ....++++|.+ +|+..|.++.. +. ...| . ..+||+ ++||+|++...
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d-~-~~lp~~~~sfD~I~~~~~--- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVAS-S-HRLPFADQSLDAIIRIYA--- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEee-c-ccCCCcCCceeEEEEecC---
Confidence 46899999999999999876421 11357889999 89999987743 22 2233 2 358999 99999997532
Q ss_pred ccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 295 VTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 295 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
+ ..+.|+.|+|||||++++...
T Consensus 161 -~------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 161 -P------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred -C------CCHHHHHhhccCCCEEEEEeC
Confidence 1 146899999999999999854
No 42
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.19 E-value=4.2e-11 Score=110.72 Aligned_cols=96 Identities=14% Similarity=0.175 Sum_probs=73.9
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCC-CCcceeeeccccccccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ 297 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~ 297 (363)
..+|||+|||+|.++..|+.... ...++++|.+ +|++.|.++.. +......+. -||+ ++||+|++..+|+|+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~--~~~~~~sfD~V~~~~vL~hl~- 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLPNINIIQGSLF--DPFKDNFFDLVLTKGVLIHIN- 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCCCCcEEEeecc--CCCCCCCEEEEEECChhhhCC-
Confidence 46899999999999999987511 1257888988 89999987532 222332222 2788 9999999999999985
Q ss_pred cCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 298 RCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 298 ~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
+..+..++.||.|++ +|+++|.+
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 556789999999998 57888875
No 43
>PRK06202 hypothetical protein; Provisional
Probab=99.19 E-value=5.8e-11 Score=110.83 Aligned_cols=100 Identities=15% Similarity=0.233 Sum_probs=73.6
Q ss_pred CCCceEEEecccccHHHHHhhc----CCCeEEEEeecCCc-chHHHHHhcCc---eeeeccccccCCCCC-CCcceeeec
Q 017983 219 SSVRNVMDMNASYGGFAAALID----QPLWVMNVVPIDAP-DTLSIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSS 289 (363)
Q Consensus 219 ~~~r~VLDvGCG~G~faa~L~~----~~v~v~~v~~~d~s-~~L~~a~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~ 289 (363)
.+..+|||+|||+|.++..|++ .+. ...++++|.+ +|++.+.++.. +......+ ..++++ ++||+|+|+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAVS-DELVAEGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEec-ccccccCCCccEEEEC
Confidence 3456999999999999888864 221 2358899998 89999988732 11111112 236677 899999999
Q ss_pred cccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
.+|+|+++. .+..+|.||.|++| |.++|.|.
T Consensus 137 ~~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 137 HFLHHLDDA-EVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred CeeecCChH-HHHHHHHHHHHhcC--eeEEEecc
Confidence 999999764 35689999999999 56666664
No 44
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.17 E-value=6.5e-11 Score=114.45 Aligned_cols=94 Identities=22% Similarity=0.322 Sum_probs=70.3
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-ee-eeccccccCCCCCCCcceeeecccccc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IG-MYHDWCESFNTYPRTYDLLHSSFLLSD 294 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~-~~~d~~e~~lpfp~sFDlVh~~~~l~~ 294 (363)
.+|||+|||+|.++.+|++.+. .|+++|.+ .+++.+.++ ++ +. ...|. . ..+++++||+|++..+|+|
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~-~-~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDI-N-SASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEech-h-cccccCCccEEEEcchhhh
Confidence 4899999999999999998764 46788888 777765443 43 11 12221 1 1234589999999999998
Q ss_pred ccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 295 VTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 295 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
++ ...+..++.+|.|+|||||++++.
T Consensus 197 l~-~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 197 LN-RERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred CC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 75 346788999999999999996653
No 45
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.16 E-value=8.4e-11 Score=118.53 Aligned_cols=100 Identities=18% Similarity=0.330 Sum_probs=75.7
Q ss_pred ccccCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcCc---eee-eccccccCCCCCCCccee
Q 017983 213 GLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL---IGM-YHDWCESFNTYPRTYDLL 286 (363)
Q Consensus 213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rgl---~~~-~~d~~e~~lpfp~sFDlV 286 (363)
.+.++++ .+|||+|||+|+++..+++. ++ .|+++|.+ +|++.+.++.- +.+ ..|+ ...+++||+|
T Consensus 162 ~l~l~~g--~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~----~~l~~~fD~I 232 (383)
T PRK11705 162 KLQLKPG--MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLPVEIRLQDY----RDLNGQFDRI 232 (383)
T ss_pred HhCCCCC--CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCeEEEEECch----hhcCCCCCEE
Confidence 3444443 59999999999999999874 43 47788988 89998888642 111 1221 2225899999
Q ss_pred eeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
++..+|+|+.. .+...++.++.|+|||||++++.+
T Consensus 233 vs~~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 233 VSVGMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEeCchhhCCh-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999999854 356789999999999999999964
No 46
>PRK06922 hypothetical protein; Provisional
Probab=99.15 E-value=5e-11 Score=126.20 Aligned_cols=101 Identities=14% Similarity=0.190 Sum_probs=76.1
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----eeeeccccccCCC--CC-CCcceeeeccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IGMYHDWCESFNT--YP-RTYDLLHSSFL 291 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----~~~~~d~~e~~lp--fp-~sFDlVh~~~~ 291 (363)
..+|||+|||+|.++..|+... ....++++|.+ .|++.+.++.. +..+...+. .+| |+ ++||+|+++.+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~-dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAI-NLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchH-hCccccCCCCEEEEEEchH
Confidence 4699999999999988887642 12367888999 89988877521 222222233 366 77 99999999999
Q ss_pred cccccc----------cCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 292 LSDVTQ----------RCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 292 l~~~~~----------~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
++|+.+ ..++..+|.|+.|+|||||.++|.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 887631 23568899999999999999999974
No 47
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.14 E-value=7.9e-11 Score=107.89 Aligned_cols=90 Identities=23% Similarity=0.322 Sum_probs=71.8
Q ss_pred ceEEEecccccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCC-CC-CCcceeeeccccccccc
Q 017983 222 RNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNT-YP-RTYDLLHSSFLLSDVTQ 297 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lp-fp-~sFDlVh~~~~l~~~~~ 297 (363)
.+|||+|||.|.+.++|.+ +++.+ .+++.. +.+..+.+||+.-+.+|. +..|+ || ++||.|+++..+.++.+
T Consensus 15 srVLDLGCGdG~LL~~L~~~k~v~g---~GvEid~~~v~~cv~rGv~Viq~Dl-d~gL~~f~d~sFD~VIlsqtLQ~~~~ 90 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEKQVDG---YGVEIDPDNVAACVARGVSVIQGDL-DEGLADFPDQSFDYVILSQTLQAVRR 90 (193)
T ss_pred CEEEecCCCchHHHHHHHHhcCCeE---EEEecCHHHHHHHHHcCCCEEECCH-HHhHhhCCCCCccEEehHhHHHhHhH
Confidence 5999999999999999987 55554 455666 678899999985444554 34464 99 99999999999999865
Q ss_pred cCCHHHHHHHHhHhccCCeEEEEE
Q 017983 298 RCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 298 ~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
++.+|.||-|| |...|++
T Consensus 91 ---P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 91 ---PDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred ---HHHHHHHHHHh---cCeEEEE
Confidence 57899999888 6677776
No 48
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.14 E-value=1.4e-10 Score=106.83 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=83.9
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC--CC-CCcceeeecc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT--YP-RTYDLLHSSF 290 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp--fp-~sFDlVh~~~ 290 (363)
..+|||+|||+|.++..|++..- ...++++|.+ +|++.+.++ ++ +.++...+...++ ++ ++||+|++.+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 46999999999999999877521 1257788888 788777653 22 3333332312355 77 9999999875
Q ss_pred cccccc-----ccCCHHHHHHHHhHhccCCeEEEEE-cCHHHHHHHHHHHHhCCceeeee
Q 017983 291 LLSDVT-----QRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHSLQWSTNIY 344 (363)
Q Consensus 291 ~l~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~l~W~~~~~ 344 (363)
...... .......+|.++.|+|||||.++|. +.......+.+.+..-.|.+...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSE 179 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccccc
Confidence 543111 1112467999999999999999997 45556777777777667776643
No 49
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.14 E-value=1.2e-10 Score=105.74 Aligned_cols=109 Identities=15% Similarity=0.249 Sum_probs=76.5
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHh----cCc--eeeeccccccCCCCCCCcceeeeccccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGL--IGMYHDWCESFNTYPRTYDLLHSSFLLS 293 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~----Rgl--~~~~~d~~e~~lpfp~sFDlVh~~~~l~ 293 (363)
..+|||+|||+|.++..|+.... ...|+++|.+ +|++.+.+ .|+ +.++....+. ++..++||+|+|.. ++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~-~~~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAED-FQHEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh-ccccCCccEEEehh-hh
Confidence 46999999999998888765321 1246777887 67655443 243 3334433333 33348999999865 33
Q ss_pred cccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCC
Q 017983 294 DVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQ 338 (363)
Q Consensus 294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~ 338 (363)
++..++.++.|+|||||.+++........++..+.++++
T Consensus 120 ------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~ 158 (181)
T TIGR00138 120 ------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQ 158 (181)
T ss_pred ------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhh
Confidence 346689999999999999999988777777777776644
No 50
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.13 E-value=8.6e-10 Score=98.97 Aligned_cols=117 Identities=14% Similarity=0.086 Sum_probs=83.2
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCC-CCcceeeecccccc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYP-RTYDLLHSSFLLSD 294 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~ 294 (363)
.+|||+|||+|.++..++..+. .++++|.+ +|++.+.++ +. +.++...+ ...+ ++||+|+++..+++
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDL---FKGVRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccc---ccccCCcccEEEECCCCCC
Confidence 5899999999999999998754 57788887 787766554 22 22222211 2223 79999999977765
Q ss_pred ccccC------------------CHHHHHHHHhHhccCCeEEEEEcCHHH-HHHHHHHHHhCCceeeee
Q 017983 295 VTQRC------------------DIADVAVEMDRILRPGGYVLVQDTLEM-INKLKPVLHSLQWSTNIY 344 (363)
Q Consensus 295 ~~~~~------------------~~~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~l~~~l~W~~~~~ 344 (363)
..+.. .++.+|.++.|+|||||.+++.+.... ...+.++++...+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 53210 146789999999999999999876554 667777777777776554
No 51
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.12 E-value=1.2e-10 Score=107.03 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=77.2
Q ss_pred ccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc----eeeeccccccCCC--CC-CCccee
Q 017983 215 AINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMYHDWCESFNT--YP-RTYDLL 286 (363)
Q Consensus 215 ~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl----~~~~~d~~e~~lp--fp-~sFDlV 286 (363)
.+....++++|++|||.|.|+..|+.+ +-.++.+|.+ ..++.|++|-- +...+ ..+| .| ++||+|
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~----~dvp~~~P~~~FDLI 110 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGLPHVEWIQ----ADVPEFWPEGRFDLI 110 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-SSEEEEE----S-TTT---SS-EEEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCCCCeEEEE----CcCCCCCCCCCeeEE
Confidence 356678899999999999999999986 3468888998 78999988843 22222 1233 56 999999
Q ss_pred eeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983 287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 324 (363)
Q Consensus 287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 324 (363)
+++.++.++.+..++..++..+...|+|||.+++....
T Consensus 111 V~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 111 VLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp EEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred EEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 99999999976667888999999999999999998654
No 52
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.11 E-value=3.5e-11 Score=113.61 Aligned_cols=70 Identities=23% Similarity=0.463 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHc----CC-CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983 6 KDEHEAQIQFALER----GI-PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~-p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s 76 (363)
-|.|+.|++.|+++ |. .+.+.+.+++.|||+|++||+|.|+..+.+.++ ..++|.|+.|||||||+|++-
T Consensus 78 vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d-~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 78 VDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPD-RERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp EES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SS-HHHHHHHHHHHEEEEEEEEEE
T ss_pred ecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCC-HHHHHHHHHHHcCCCeEEEEe
Confidence 48999999999987 23 467778889999999999999999999888774 678999999999999999885
No 53
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.11 E-value=1e-10 Score=111.29 Aligned_cols=96 Identities=18% Similarity=0.226 Sum_probs=74.8
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----ee-------eeccccccCCCCCCCcceee
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IG-------MYHDWCESFNTYPRTYDLLH 287 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----~~-------~~~d~~e~~lpfp~sFDlVh 287 (363)
.++|||+|||+|-+...|+..+.. |+++|.+ +|+++|.++-- .+ ..+...|. +...||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~---V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~---~~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQ---VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG---LTGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCCe---eEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh---cccccceee
Confidence 378999999999999999998755 6788888 89999988731 11 11111111 225599999
Q ss_pred eccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH
Q 017983 288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE 325 (363)
Q Consensus 288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~ 325 (363)
|+.+++|+.+ +..++.-+.+.|||||.++|++.+.
T Consensus 164 csevleHV~d---p~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 164 CSEVLEHVKD---PQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred eHHHHHHHhC---HHHHHHHHHHHhCCCCceEeeehhh
Confidence 9999999875 5779999999999999999998654
No 54
>PRK04266 fibrillarin; Provisional
Probab=99.07 E-value=1.7e-09 Score=101.72 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=63.7
Q ss_pred cccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHH----Hhc-Cceeeecccccc--CCCCCCCcce
Q 017983 214 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII----FDR-GLIGMYHDWCES--FNTYPRTYDL 285 (363)
Q Consensus 214 l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a----~~R-gl~~~~~d~~e~--~lpfp~sFDl 285 (363)
+.+.++ .+|||+|||+|.++..|++... ...|.++|.+ .|++.+ .++ ++.....|-.+. ..+++.+||+
T Consensus 68 l~i~~g--~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 68 FPIKKG--SKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred CCCCCC--CEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCE
Confidence 445554 5999999999999999987521 1247788888 777644 333 222233332111 1223477999
Q ss_pred eeeccccccccccCCHHHHHHHHhHhccCCeEEEE
Q 017983 286 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV 320 (363)
Q Consensus 286 Vh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii 320 (363)
|++.. .++.....+|.|+.|+|||||+++|
T Consensus 145 i~~d~-----~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 145 IYQDV-----AQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred EEECC-----CChhHHHHHHHHHHHhcCCCcEEEE
Confidence 98542 2222234578999999999999999
No 55
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.07 E-value=1.3e-09 Score=98.41 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=79.5
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCCCCcceeeeccccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYPRTYDLLHSSFLLS 293 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp~sFDlVh~~~~l~ 293 (363)
..+|||+|||+|.++..++.... ...++++|.+ .+++.+.++ ++ +.++... ...+++++||+|++.....
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d--~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGE--APIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecC--chhhcCcCCCEEEECCCcc
Confidence 46999999999999998886531 1246777887 777776543 22 2222221 1234558899999876543
Q ss_pred cccccCCHHHHHHHHhHhccCCeEEEEEc-CHHHHHHHHHHHHhCCcee
Q 017983 294 DVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWST 341 (363)
Q Consensus 294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~~ 341 (363)
.+..++.++.|+|||||++++.. ......++.++++...++.
T Consensus 109 ------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 109 ------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred ------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 34668999999999999999976 3456677888888888853
No 56
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.06 E-value=5.9e-10 Score=101.57 Aligned_cols=100 Identities=24% Similarity=0.353 Sum_probs=74.5
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc----eeeeccccccCCCCC-CCcceeeeccccc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMYHDWCESFNTYP-RTYDLLHSSFLLS 293 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl----~~~~~d~~e~~lpfp-~sFDlVh~~~~l~ 293 (363)
+..+|||+|||+|.++..++........++++|.+ .++..+.++.. +...+.... .++++ ++||+|+++.+++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAE-ALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchh-cCCCCCCcEEEEEEeeeeC
Confidence 34699999999999999888753211357777877 77777776542 222222222 36677 8999999999998
Q ss_pred cccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 294 DVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
|.. ++..++.++.++|||||++++.+.
T Consensus 118 ~~~---~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 118 NVT---DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred Ccc---cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 765 467899999999999999998753
No 57
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.04 E-value=1.4e-09 Score=100.13 Aligned_cols=98 Identities=26% Similarity=0.370 Sum_probs=73.0
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-------ceeeeccccccCCCCC-CCcceeeeccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-------LIGMYHDWCESFNTYP-RTYDLLHSSFL 291 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-------l~~~~~d~~e~~lpfp-~sFDlVh~~~~ 291 (363)
..+|||+|||+|.++..++........++++|.+ ++++.+.++. .+..+....+ .++++ ++||+|+++.+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCCCCCCCccEEEEecc
Confidence 3689999999999998887753112357788887 7887776652 1223322222 35677 89999999999
Q ss_pred cccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
++++. +...+|.++.++|+|||++++.+
T Consensus 131 l~~~~---~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 131 LRNVP---DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cccCC---CHHHHHHHHHHhccCCcEEEEEE
Confidence 98765 46789999999999999999875
No 58
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.03 E-value=1.6e-09 Score=89.70 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=64.9
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeecccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL 292 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l 292 (363)
..+|||+|||+|.++..+++.... ..++++|.+ .+++.+.+. ++ +..+.......+++. .+||.|++....
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence 359999999999999999875211 357788887 777765432 22 222211111124444 899999987654
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
++ ...++.++.|+|||||++++.
T Consensus 99 ~~------~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 99 GL------LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred hh------HHHHHHHHHHHcCCCCEEEEE
Confidence 43 357999999999999999985
No 59
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.03 E-value=1.7e-09 Score=104.87 Aligned_cols=136 Identities=16% Similarity=0.207 Sum_probs=87.2
Q ss_pred hccccchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceee
Q 017983 194 AFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGM 268 (363)
Q Consensus 194 ~F~~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~ 268 (363)
.|-...+-..+.+.. .+..+. . +..+|||+|||+|.++.+++..+.. .|+++|.+ .+++.+.+.. +...
T Consensus 137 aFgtG~h~tt~l~l~-~l~~~~-~--~g~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~ 210 (288)
T TIGR00406 137 AFGTGTHPTTSLCLE-WLEDLD-L--KDKNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDR 210 (288)
T ss_pred cccCCCCHHHHHHHH-HHHhhc-C--CCCEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence 454545545454443 343322 1 2369999999999999888876542 57788888 7888776653 1111
Q ss_pred eccccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH-HHHHHHHHHHHhCCceee
Q 017983 269 YHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWSTN 342 (363)
Q Consensus 269 ~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~~~ 342 (363)
+........+++ +.||+|+++.+..+ +..++.++.|+|||||+++++... +....+.+..++. |+..
T Consensus 211 ~~~~~~~~~~~~~~~fDlVvan~~~~~------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 211 LQVKLIYLEQPIEGKADVIVANILAEV------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred eEEEecccccccCCCceEEEEecCHHH------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Ccee
Confidence 111111134455 89999999865432 456999999999999999998653 3445566655554 6543
No 60
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.03 E-value=2.7e-10 Score=101.21 Aligned_cols=71 Identities=18% Similarity=0.121 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHcC--------CCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 7 DEHEAQIQFALERG--------IPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 7 D~~~~qvq~A~erg--------~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
|.|+.|++.|++|. ..+.+.+.+++.|||++++||+|+|+.+++++. +...+|+|+.|||||||.|++...
T Consensus 4 D~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 4 DFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred cCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 89999999997652 125677788999999999999999999887775 467899999999999999998744
No 61
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.02 E-value=7.8e-10 Score=102.57 Aligned_cols=99 Identities=18% Similarity=0.123 Sum_probs=62.7
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCceeeeccccccC-------CCCC-CCcceeeecccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESF-------NTYP-RTYDLLHSSFLL 292 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~-------lpfp-~sFDlVh~~~~l 292 (363)
..+|||+|||+|.++..|++.......|+++|.+.|... .++.....| .+.. -+++ .+||+|+++.+.
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~---~~v~~i~~D-~~~~~~~~~i~~~~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI---VGVDFLQGD-FRDELVLKALLERVGDSKVQVVMSDMAP 127 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC---CCcEEEecC-CCChHHHHHHHHHhCCCCCCEEecCCCC
Confidence 358999999999999888875321124566666543221 232222233 2221 1366 899999998655
Q ss_pred ccccccC-C-------HHHHHHHHhHhccCCeEEEEEcC
Q 017983 293 SDVTQRC-D-------IADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 293 ~~~~~~~-~-------~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
....+.. + .+.+|.|+.|+|||||.+++...
T Consensus 128 ~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 128 NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 4332210 1 25689999999999999999643
No 62
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.02 E-value=8.9e-11 Score=109.96 Aligned_cols=146 Identities=16% Similarity=0.264 Sum_probs=102.8
Q ss_pred hhccccchhHHHHHHH--hh-----hhc-cc-cCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHh
Q 017983 193 EAFNKDTTHWYALVSD--VY-----VGG-LA-INWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD 262 (363)
Q Consensus 193 e~F~~~~~~W~~~~~~--~y-----~~~-l~-i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~ 262 (363)
.-|+.-.+++.+.+.+ .| +.+ ++ ...+..+++||+|||||-++-+|.+.. -.+.++|.| |||..|.+
T Consensus 89 ~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 89 TLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHE 165 (287)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHh
Confidence 4566666666665543 12 111 11 345668999999999999999987752 236888999 99999999
Q ss_pred cCce-eeeccccccCCC-CC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH-------------H-
Q 017983 263 RGLI-GMYHDWCESFNT-YP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-------------E- 325 (363)
Q Consensus 263 Rgl~-~~~~d~~e~~lp-fp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-------------~- 325 (363)
||+. ..++.....|++ -. +-||+|.+..||.++.+ ++.++.=..+.|.|||.|++|-.. .
T Consensus 166 Kg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~Ry 242 (287)
T COG4976 166 KGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA---LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRY 242 (287)
T ss_pred ccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcc---hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhh
Confidence 9982 222322233555 34 89999999999998864 678999999999999999998311 0
Q ss_pred --HHHHHHHHHHhCCceeeee
Q 017983 326 --MINKLKPVLHSLQWSTNIY 344 (363)
Q Consensus 326 --~~~~i~~l~~~l~W~~~~~ 344 (363)
-...|..+..+-..++...
T Consensus 243 AH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 243 AHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred ccchHHHHHHHHhcCceEEEe
Confidence 1356777777777766544
No 63
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.02 E-value=1.3e-09 Score=103.41 Aligned_cols=114 Identities=15% Similarity=0.242 Sum_probs=78.6
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-CCcceeeecccccccccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR 298 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~ 298 (363)
..+|||+|||+|.++.+++..+.. .|+++|.+ .+++.+.++.....+.+.. .++.. .+||+|+|+....
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~--~~~~~~~~fD~Vvani~~~----- 190 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNV--YLPQGDLKADVIVANILAN----- 190 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceE--EEccCCCCcCEEEEcCcHH-----
Confidence 469999999999998888776543 37788888 7888776653211111100 12222 2799999874332
Q ss_pred CCHHHHHHHHhHhccCCeEEEEEcCHH-HHHHHHHHHHhCCceeeee
Q 017983 299 CDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTNIY 344 (363)
Q Consensus 299 ~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~~~ 344 (363)
.+..++.++.|+|||||++++++... ....+.+.++...++....
T Consensus 191 -~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 191 -PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 24568999999999999999997543 4567777777777775443
No 64
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.01 E-value=2.3e-09 Score=99.07 Aligned_cols=97 Identities=11% Similarity=0.093 Sum_probs=73.1
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-------eeeeccccccCCCCCCCcceeeeccc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-------IGMYHDWCESFNTYPRTYDLLHSSFL 291 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-------~~~~~d~~e~~lpfp~sFDlVh~~~~ 291 (363)
+..+|||+|||+|.++..|++.+. .++++|.+ +|+..+.++.. +...+...+ .+ +++||+|++..+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~-~~--~~~fD~ii~~~~ 128 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL-SL--CGEFDIVVCMDV 128 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh-hC--CCCcCEEEEhhH
Confidence 356999999999999999998754 46788988 89988877632 222222111 12 389999999999
Q ss_pred cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
++|++. .++..++.++.|++++|+++.+...
T Consensus 129 l~~~~~-~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 129 LIHYPA-SDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred HHhCCH-HHHHHHHHHHHHHhCCCEEEEECCC
Confidence 998854 3577899999999999888887644
No 65
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.01 E-value=4e-09 Score=96.43 Aligned_cols=143 Identities=13% Similarity=0.157 Sum_probs=86.8
Q ss_pred hhccc--cchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc
Q 017983 193 EAFNK--DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL 265 (363)
Q Consensus 193 e~F~~--~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl 265 (363)
+.|.. +...++..+..--+..+.+.. ..+|||+|||+|.++..++..-.....|+.+|.+ .+++.+.++ |+
T Consensus 13 ~~~~~~~~~~~t~~~~r~~~l~~l~~~~--~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~ 90 (198)
T PRK00377 13 EEFERDEEIPMTKEEIRALALSKLRLRK--GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV 90 (198)
T ss_pred HHHccCCCCCCCHHHHHHHHHHHcCCCC--cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence 44443 334555544321122344443 3599999999999988876531111246778887 788766544 32
Q ss_pred ---eeeeccccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE-cCHHHHHHHHHHHHhCCce
Q 017983 266 ---IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHSLQWS 340 (363)
Q Consensus 266 ---~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~l~W~ 340 (363)
+.++.......++.. ..||+|++... ...+..++.++.|+|||||++++. -..+.+.++...++.+.++
T Consensus 91 ~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 91 LNNIVLIKGEAPEILFTINEKFDRIFIGGG------SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFN 164 (198)
T ss_pred CCCeEEEEechhhhHhhcCCCCCEEEECCC------cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCC
Confidence 222222222234444 78999998532 124678999999999999999883 2344566677777666665
Q ss_pred eee
Q 017983 341 TNI 343 (363)
Q Consensus 341 ~~~ 343 (363)
..+
T Consensus 165 ~~~ 167 (198)
T PRK00377 165 LEI 167 (198)
T ss_pred eEE
Confidence 443
No 66
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.00 E-value=9.7e-10 Score=99.96 Aligned_cols=88 Identities=22% Similarity=0.269 Sum_probs=66.3
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCC-CCC-CCcceeeecccccccccc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFN-TYP-RTYDLLHSSFLLSDVTQR 298 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~l-pfp-~sFDlVh~~~~l~~~~~~ 298 (363)
.+|||+|||+|.++..|++... .++.++|.+ +++..+.++++.....+ .+..+ +++ ++||+|+|+.+|+|+++
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~~d-~~~~l~~~~~~sfD~Vi~~~~l~~~~d- 90 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQGD-LDEGLEAFPDKSFDYVILSQTLQATRN- 90 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEEEE-hhhcccccCCCCcCEEEEhhHhHcCcC-
Confidence 4899999999999999876421 134677887 88988888875333333 22234 477 89999999999999864
Q ss_pred CCHHHHHHHHhHhccCC
Q 017983 299 CDIADVAVEMDRILRPG 315 (363)
Q Consensus 299 ~~~~~~L~Em~RVLRPG 315 (363)
...+|+||.|+++++
T Consensus 91 --~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 91 --PEEILDEMLRVGRHA 105 (194)
T ss_pred --HHHHHHHHHHhCCeE
Confidence 578999999987754
No 67
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.99 E-value=1.8e-09 Score=103.21 Aligned_cols=71 Identities=21% Similarity=0.147 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHcC-------C-CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983 6 KDEHEAQIQFALERG-------I-PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA 77 (363)
Q Consensus 6 ~D~~~~qvq~A~erg-------~-p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~ 77 (363)
-|.|+.|++.|.+|. . .+.+.+.+++.|||++++||+|+|+.+++|+. ++..+|.|+.|||||||+|++..
T Consensus 104 vD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 104 LDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVV-DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCC-CHHHHHHHHHHHcCcCcEEEEEE
Confidence 389999999998762 1 35567788999999999999999999987776 47789999999999999999974
No 68
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.98 E-value=1.7e-09 Score=98.75 Aligned_cols=120 Identities=14% Similarity=0.198 Sum_probs=76.2
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCC--CCC-CCcceeeecc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFN--TYP-RTYDLLHSSF 290 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~l--pfp-~sFDlVh~~~ 290 (363)
...|||+|||+|.++..|+.... ..+++++|.+ .|+..+.++ |+ +.+++..+...+ .++ ++||.|++.+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 35899999999999999987532 1257788887 787776543 32 333333222211 256 7999999875
Q ss_pred cccccc-----ccCCHHHHHHHHhHhccCCeEEEEE-cCHHHHHHHHHHHHh-CCcee
Q 017983 291 LLSDVT-----QRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHS-LQWST 341 (363)
Q Consensus 291 ~l~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~-l~W~~ 341 (363)
-..+.. .+.....++.++.|+|||||.+++. |.......+.+.+.. -+|+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 433211 1111257999999999999999886 444455555444433 33443
No 69
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.97 E-value=1.4e-09 Score=105.69 Aligned_cols=99 Identities=17% Similarity=0.326 Sum_probs=69.8
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHh----cCc---eeee-ccccccCCCCCCCcceeeeccc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFD----RGL---IGMY-HDWCESFNTYPRTYDLLHSSFL 291 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~----Rgl---~~~~-~d~~e~~lpfp~sFDlVh~~~~ 291 (363)
+.++|||+|||+|.++..++++.-. ..++..|.+.+++.+.+ .|+ +..+ +|..+ .++| .+|+|+++++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~--~~~~-~~D~v~~~~~ 224 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYK--ESYP-EADAVLFCRI 224 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCC-CEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccC--CCCC-CCCEEEeEhh
Confidence 4579999999999999999875311 23556676667766544 344 2222 33111 3455 4799999999
Q ss_pred cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
++++.+ .....+|+++.|+|||||+++|.|.
T Consensus 225 lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 225 LYSANE-QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhcCCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 998753 3346799999999999999999874
No 70
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.97 E-value=1.7e-09 Score=97.97 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=59.6
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCceeeeccccccCC------CCC-CCcceeeecccc-
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFN------TYP-RTYDLLHSSFLL- 292 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~l------pfp-~sFDlVh~~~~l- 292 (363)
..+|||+|||+|+++..++.+......|+++|.+.+. ...++.....|..+..+ .++ ++||+|++....
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~ 109 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPN 109 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCC
Confidence 4599999999999988887642111135666766332 11233222223211110 256 789999986432
Q ss_pred -------ccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 293 -------SDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 293 -------~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
.|....+..+.+|.++.|+|||||++++.
T Consensus 110 ~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 110 ISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 12111122467999999999999999994
No 71
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.97 E-value=2.1e-09 Score=98.96 Aligned_cols=127 Identities=20% Similarity=0.262 Sum_probs=81.4
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-c----hHHHHHhcCc-ee-eeccccccCCCCCCCcceeeeccccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-D----TLSIIFDRGL-IG-MYHDWCESFNTYPRTYDLLHSSFLLS 293 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~----~L~~a~~Rgl-~~-~~~d~~e~~lpfp~sFDlVh~~~~l~ 293 (363)
..++||+|||.|.-+.+|+++|.. |+++|.+ . ..++|.++++ +. ...|. + ...+++.||+|++..+|.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl-~-~~~~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRLAEEEGLDIRTRVADL-N-DFDFPEEYDFIVSTVVFM 105 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BG-C-CBS-TTTEEEEEEESSGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHhhcCceeEEEEecc-h-hccccCCcCEEEEEEEec
Confidence 359999999999999999999865 4555655 2 3345666676 32 23332 2 134568899999999999
Q ss_pred cccccCCHHHHHHHHhHhccCCeEEEEEcC-----------HHHHHHHHHHH-HhCCceeeeecceEEEEEe
Q 017983 294 DVTQRCDIADVAVEMDRILRPGGYVLVQDT-----------LEMINKLKPVL-HSLQWSTNIYHDQFLVGKK 353 (363)
Q Consensus 294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----------~~~~~~i~~l~-~~l~W~~~~~~~~~li~~K 353 (363)
|++ +..+..++..|..-|+|||+++|-.. .++.-+-.+|. .=-.|+.....|.+--..|
T Consensus 106 fL~-~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~dW~il~y~E~~g~~h~ 176 (192)
T PF03848_consen 106 FLQ-RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYADWEILKYNEDVGELHR 176 (192)
T ss_dssp GS--GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEEEEEEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhCCCeEEEEEccccceee
Confidence 886 45778999999999999999888321 12222222333 2225988877666654444
No 72
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.96 E-value=2.3e-09 Score=103.79 Aligned_cols=100 Identities=21% Similarity=0.386 Sum_probs=76.8
Q ss_pred hccccCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHH----hcCce---e-eeccccccCCCCCC
Q 017983 212 GGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIF----DRGLI---G-MYHDWCESFNTYPR 281 (363)
Q Consensus 212 ~~l~i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~----~Rgl~---~-~~~d~~e~~lpfp~ 281 (363)
+.+++++| .+|||+|||-|+++.+++++ ++. |++++.| ++...+. ++|+. . .++|| -.+..
T Consensus 66 ~kl~L~~G--~~lLDiGCGWG~l~~~aA~~y~v~---V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~----rd~~e 136 (283)
T COG2230 66 EKLGLKPG--MTLLDIGCGWGGLAIYAAEEYGVT---VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY----RDFEE 136 (283)
T ss_pred HhcCCCCC--CEEEEeCCChhHHHHHHHHHcCCE---EEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc----ccccc
Confidence 35667766 49999999999999999986 666 5666777 6765544 45663 2 24553 22346
Q ss_pred CcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 282 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 282 sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
.||-|++..+|+|+.. .+..+++.-++++|+|||.+++-
T Consensus 137 ~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 137 PFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred ccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 6999999999999975 57889999999999999998875
No 73
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.93 E-value=9.1e-08 Score=99.90 Aligned_cols=120 Identities=8% Similarity=0.101 Sum_probs=72.7
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-----chHHHHHhcCc--eeeecccccc-CCCCC-CCcceeeecc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-----DTLSIIFDRGL--IGMYHDWCES-FNTYP-RTYDLLHSSF 290 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-----~~L~~a~~Rgl--~~~~~d~~e~-~lpfp-~sFDlVh~~~ 290 (363)
....+||+|||.|.|...++...-. .++++++.. ..+..+.++|+ +.++.+..+. ..-|| +++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3468999999999999999975322 145555554 34455566665 2222221111 01267 9999999864
Q ss_pred ccc-----cccccCCHHHHHHHHhHhccCCeEEEEE-cCHHHHHHHHHHH-HhCCce
Q 017983 291 LLS-----DVTQRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVL-HSLQWS 340 (363)
Q Consensus 291 ~l~-----~~~~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~-~~l~W~ 340 (363)
-=. |-..+---...|.++.|+|||||.+.+. |..++...+.+.. ..-.|+
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~ 482 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFE 482 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeE
Confidence 322 1111111267999999999999998886 5555555544444 333344
No 74
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.91 E-value=5.9e-09 Score=96.19 Aligned_cols=94 Identities=16% Similarity=0.117 Sum_probs=70.5
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c---eeeeccccccCCCCC-CCcceeeeccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L---IGMYHDWCESFNTYP-RTYDLLHSSFL 291 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l---~~~~~d~~e~~lpfp-~sFDlVh~~~~ 291 (363)
..+|||+|||+|.++..|++.+.. ++++|.+ +|++.+.++- . +.... ..++++ ++||+|++..+
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~----~d~~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPEAGLAGNITFEV----GDLESLLGRFDTVVCLDV 136 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccCcEEEE----cCchhccCCcCEEEEcch
Confidence 469999999999999999887643 7888988 8998887762 1 12222 125566 89999999999
Q ss_pred cccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
++|+++. .+..++.++.|++++|+.+.+..
T Consensus 137 l~~~~~~-~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 137 LIHYPQE-DAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred hhcCCHH-HHHHHHHHHHhhcCCeEEEEECC
Confidence 9988653 46789999999887666555443
No 75
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.90 E-value=3.3e-09 Score=98.20 Aligned_cols=98 Identities=20% Similarity=0.265 Sum_probs=70.0
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-----c--eeeeccccccCCC-CC-CCcceeeeccc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-----L--IGMYHDWCESFNT-YP-RTYDLLHSSFL 291 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-----l--~~~~~d~~e~~lp-fp-~sFDlVh~~~~ 291 (363)
-.||.+|||||.--.++-..+ +-.|+.+|.+ +|-+++.++. + ...++...| .+| .+ .|||.|+|..+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p--~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge-~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKP--INSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGE-NLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cceEEecccCCCCcccccCCC--CceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechh-cCcccccCCeeeEEEEEE
Confidence 468999999997544444332 2245666766 7776655443 1 213333344 477 67 99999999999
Q ss_pred cccccccCCHHHHHHHHhHhccCCeEEEEEcCHH
Q 017983 292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE 325 (363)
Q Consensus 292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~ 325 (363)
|-... +.++.|.|+.|+|||||.+++.+...
T Consensus 155 LCSve---~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 155 LCSVE---DPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EeccC---CHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 98554 56899999999999999999998653
No 76
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.89 E-value=5.8e-09 Score=96.01 Aligned_cols=97 Identities=20% Similarity=0.268 Sum_probs=70.7
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCC-CCCcceeeecccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTY-PRTYDLLHSSFLL 292 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpf-p~sFDlVh~~~~l 292 (363)
..+|||+|||+|.++..+++.+.. ++++|.+ .++..+.++ +. +.......+..... +++||+|++..++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 468999999999999988876533 6677877 777776654 22 22222222222222 2799999999999
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
+|.. ++..+|.++.++|+|||.+++.+.
T Consensus 123 ~~~~---~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 123 EHVP---DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HhCC---CHHHHHHHHHHhcCCCcEEEEEec
Confidence 9875 457899999999999999998753
No 77
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.88 E-value=5e-09 Score=96.57 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=62.5
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCCCCcceeeecccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFLL 292 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~~~l 292 (363)
..+|||+|||+|.+++.|++.-.....|+++|.+ ++++.+.++ |+ +.+++..+...++...+||+|++...+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAA 152 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCc
Confidence 3699999999999998887631001146777877 777766543 32 233332222222222899999999877
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
.+++ .|+.|+|||||++++..
T Consensus 153 ~~~~---------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 153 STIP---------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred chhh---------HHHHHhcCcCcEEEEEE
Confidence 6543 47889999999998854
No 78
>PTZ00146 fibrillarin; Provisional
Probab=98.88 E-value=2.3e-08 Score=97.46 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=66.9
Q ss_pred cccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-c----hHHHHHhc-Cceeeecccccc-CCCCC-CCcce
Q 017983 214 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-D----TLSIIFDR-GLIGMYHDWCES-FNTYP-RTYDL 285 (363)
Q Consensus 214 l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~----~L~~a~~R-gl~~~~~d~~e~-~lpfp-~sFDl 285 (363)
+.|+++ .+|||+|||+|.++..|++.-...-.|.++|.+ + ++..+.+| ++..+..|.... ....+ .+||+
T Consensus 128 l~IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 128 IPIKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred eccCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCE
Confidence 445554 599999999999999998752101135666766 3 56776665 444455553211 12234 78999
Q ss_pred eeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 286 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 286 Vh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
|++.... +.....++.|+.|+|||||+|+|.
T Consensus 206 V~~Dva~-----pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVAQ-----PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCCC-----cchHHHHHHHHHHhccCCCEEEEE
Confidence 9988642 223445778999999999999994
No 79
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.87 E-value=2.9e-09 Score=94.56 Aligned_cols=71 Identities=23% Similarity=0.260 Sum_probs=56.4
Q ss_pred ecCCc-chHHHHHhcCc---------eeeeccccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEE
Q 017983 250 PIDAP-DTLSIIFDRGL---------IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYV 318 (363)
Q Consensus 250 ~~d~s-~~L~~a~~Rgl---------~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~l 318 (363)
++|.| +||++|.+|.- +..+...++ .+||+ ++||+|++.++++++. +...+|+|++|+|||||++
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~-~lp~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAI-DLPFDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechh-hCCCCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCeEE
Confidence 56888 89999866521 333443444 48999 8999999999999886 4578999999999999999
Q ss_pred EEEcCH
Q 017983 319 LVQDTL 324 (363)
Q Consensus 319 ii~D~~ 324 (363)
+|.|..
T Consensus 78 ~i~d~~ 83 (160)
T PLN02232 78 SILDFN 83 (160)
T ss_pred EEEECC
Confidence 998754
No 80
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.87 E-value=2.1e-09 Score=102.18 Aligned_cols=69 Identities=25% Similarity=0.274 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHcC----CC----ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983 7 DEHEAQIQFALERG----IP----AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 7 D~~~~qvq~A~erg----~p----~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s 76 (363)
|++..|+..+.+|. +. +.....+|+.|||||++||+...+...-.|++ ..++|+|++|||||||+|.+-
T Consensus 137 Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th-~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 137 DINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH-IQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred eCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCC-HHHHHHHHHHhcCCCcEEEEE
Confidence 88889988877764 32 33445579999999999999999998889985 779999999999999999875
No 81
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.86 E-value=5.8e-09 Score=96.92 Aligned_cols=98 Identities=19% Similarity=0.315 Sum_probs=71.8
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCC-CCcceeeecccc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYP-RTYDLLHSSFLL 292 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l 292 (363)
+..+|||+|||+|.++..+.+.+. .++.+|.+ +++..+.++ +. +.......+.....+ ++||+|+++.++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 346899999999999999987753 46777877 777777654 22 112211111222234 899999999999
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
+|..+ ...+|.++.|+|+|||.+++.+.
T Consensus 125 ~~~~~---~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 125 EHVPD---PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hccCC---HHHHHHHHHHHcCCCcEEEEEec
Confidence 98764 57799999999999999999853
No 82
>PRK14968 putative methyltransferase; Provisional
Probab=98.85 E-value=3e-08 Score=88.25 Aligned_cols=117 Identities=17% Similarity=0.218 Sum_probs=78.9
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----C-----ceeeeccccccCCCCC-CCcceeeec
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----G-----LIGMYHDWCESFNTYP-RTYDLLHSS 289 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----g-----l~~~~~d~~e~~lpfp-~sFDlVh~~ 289 (363)
..+|||+|||+|.++..|+..+ .++.++|.+ +++..+.++ + ......|+ ..+++ ++||+|+++
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~d~vi~n 97 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL---FEPFRGDKFDVILFN 97 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccc---cccccccCceEEEEC
Confidence 4589999999999999998874 356778887 787766433 2 22223332 23456 789999987
Q ss_pred ccccccc------------------ccCCHHHHHHHHhHhccCCeEEEEEcCH-HHHHHHHHHHHhCCceeee
Q 017983 290 FLLSDVT------------------QRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWSTNI 343 (363)
Q Consensus 290 ~~l~~~~------------------~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~~~~ 343 (363)
..+.+.. ....+..++.++.|+|||||.+++.... .....+.+++....|+...
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeee
Confidence 5443210 0112466899999999999998876432 2345677777777776543
No 83
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.84 E-value=1.3e-08 Score=94.85 Aligned_cols=94 Identities=19% Similarity=0.127 Sum_probs=68.0
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHh-cCc-----------------ee-eeccccccCCCC-C
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD-RGL-----------------IG-MYHDWCESFNTY-P 280 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~-Rgl-----------------~~-~~~d~~e~~lpf-p 280 (363)
.+|||+|||.|.-+.+|+++|. +|+++|.| ..++.+.. .|+ +. ...|..+ ++. .
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~--~~~~~ 110 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA--LTAAD 110 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC--CCccc
Confidence 5999999999999999999875 46788888 66765432 332 11 2233211 222 2
Q ss_pred -CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 281 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 281 -~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
.+||+|.-..+|+|++ +.....++..|.|.|||||++++.
T Consensus 111 ~~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 111 LGPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CCCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEE
Confidence 6799999999999985 345678999999999999975543
No 84
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.84 E-value=1.4e-08 Score=94.97 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=68.3
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHH-HhcCceee--------------eccccccCCCC---C-C
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII-FDRGLIGM--------------YHDWCESFNTY---P-R 281 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a-~~Rgl~~~--------------~~d~~e~~lpf---p-~ 281 (363)
.+|||+|||.|.-+.+|+++|.. |+++|.+ ..++.+ .++|+... +.-++.....+ . .
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~---V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHE---VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCe---EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 59999999999999999998754 6788888 666654 34444110 00011122222 3 6
Q ss_pred CcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEE
Q 017983 282 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV 320 (363)
Q Consensus 282 sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii 320 (363)
+||+|.-+.+|+|++ ......++..|.++|||||++++
T Consensus 116 ~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence 899999999999986 34568899999999999997444
No 85
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.81 E-value=7.2e-09 Score=97.60 Aligned_cols=84 Identities=18% Similarity=0.283 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCCh
Q 017983 6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDD 85 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~ 85 (363)
-|.++.+++.|+++.....+.+.+.+.+||++++||+|+|+.++ ||..+...+|.|+.|+|||||.|+++.+. ....+
T Consensus 70 ~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~-~~~~~ 147 (251)
T PRK10258 70 LDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTLV-QGSLP 147 (251)
T ss_pred EECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeCC-CCchH
Confidence 48899999999998755556677899999999999999998765 67767788999999999999999999763 23455
Q ss_pred hhHHHH
Q 017983 86 RHRSVW 91 (363)
Q Consensus 86 e~~~~~ 91 (363)
|....|
T Consensus 148 el~~~~ 153 (251)
T PRK10258 148 ELHQAW 153 (251)
T ss_pred HHHHHH
Confidence 544333
No 86
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.80 E-value=1.3e-08 Score=95.21 Aligned_cols=119 Identities=15% Similarity=0.073 Sum_probs=83.1
Q ss_pred ccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCcee-eeccccccCCCCC-CCcceeeec
Q 017983 213 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIG-MYHDWCESFNTYP-RTYDLLHSS 289 (363)
Q Consensus 213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~-~~~d~~e~~lpfp-~sFDlVh~~ 289 (363)
.|++..+..+-|||||||+|--+..|.+.+- -.+++|.| .||++|.+|-+.+ .++.....-+||+ +|||.|++-
T Consensus 43 LLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISI 119 (270)
T KOG1541|consen 43 LLALPGPKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISI 119 (270)
T ss_pred HhhCCCCCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEe
Confidence 4556655678999999999999999988762 25688999 8999999876532 2222223469999 999999987
Q ss_pred cccccc-------ccc-CCHHHHHHHHhHhccCCeEEEEEc---CHHHHHHHHHHH
Q 017983 290 FLLSDV-------TQR-CDIADVAVEMDRILRPGGYVLVQD---TLEMINKLKPVL 334 (363)
Q Consensus 290 ~~l~~~-------~~~-~~~~~~L~Em~RVLRPGG~lii~D---~~~~~~~i~~l~ 334 (363)
.++.-+ +++ ..+..++.-++.+|++|+..++.= ..+.++.|..-|
T Consensus 120 SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a 175 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQA 175 (270)
T ss_pred eeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHH
Confidence 665411 111 123456777999999999999973 344444554444
No 87
>PRK14967 putative methyltransferase; Provisional
Probab=98.80 E-value=4.4e-08 Score=91.20 Aligned_cols=116 Identities=18% Similarity=0.288 Sum_probs=73.5
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeee-ccccccCCCCC-CCcceeeeccccc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMY-HDWCESFNTYP-RTYDLLHSSFLLS 293 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~-~d~~e~~lpfp-~sFDlVh~~~~l~ 293 (363)
.+|||+|||+|.++..++..+. ..++++|.+ .++..+.++ ++ +.++ .|+. ..++ ++||+|+++--+.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~---~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWA---RAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchh---hhccCCCeeEEEECCCCC
Confidence 5999999999999999887653 257788888 778766553 32 2222 2321 2356 8999999974322
Q ss_pred cccc------------------cCCHHHHHHHHhHhccCCeEEEEEcCH-HHHHHHHHHHHhCCceee
Q 017983 294 DVTQ------------------RCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWSTN 342 (363)
Q Consensus 294 ~~~~------------------~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~~~ 342 (363)
+-.. ...++.++.++.|+|||||.+++.... .....+.++++.-.+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 180 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAE 180 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeE
Confidence 1110 001466889999999999999985322 123344455555555433
No 88
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.80 E-value=2.1e-08 Score=77.66 Aligned_cols=95 Identities=24% Similarity=0.366 Sum_probs=66.2
Q ss_pred eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHH---hcCc---eeeeccccccCCCCC-CCcceeeecccccc
Q 017983 223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIF---DRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLLSD 294 (363)
Q Consensus 223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~---~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~ 294 (363)
+|||+|||+|.++..++... ...+...|.+ +.+..+. +.+. +..++.......+.+ .+||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 58999999999998888732 2356677776 5555554 1111 233332223323334 89999999999887
Q ss_pred ccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 295 VTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 295 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
+ ......++..+.+.|||||.+++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4 235678999999999999999986
No 89
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.80 E-value=6.3e-09 Score=98.19 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=75.5
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCcee-------eeccccccCCCCCCCcceeeecccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIG-------MYHDWCESFNTYPRTYDLLHSSFLL 292 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~-------~~~d~~e~~lpfp~sFDlVh~~~~l 292 (363)
-|.++|+|||+|--+..++++. -+|+++|.+ .||++|.+.-.+. +..+-....+.=++|.|+|+|+.++
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred cceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 3689999999994444445542 257888998 8999887764321 2222111111114999999999999
Q ss_pred ccccccCCHHHHHHHHhHhccCCe-EEEE---EcCHHHHHHHHHHHHhCCce
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGG-YVLV---QDTLEMINKLKPVLHSLQWS 340 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG-~lii---~D~~~~~~~i~~l~~~l~W~ 340 (363)
|- ++++.++.++.|||||.| .+.+ .|..-+..++..+..+++|+
T Consensus 111 HW----Fdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 111 HW----FDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred Hh----hchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 84 457899999999999977 4333 34333455666666666665
No 90
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.80 E-value=2e-08 Score=98.03 Aligned_cols=111 Identities=17% Similarity=0.171 Sum_probs=73.4
Q ss_pred cchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc--chHHHHHhcCce------eee
Q 017983 198 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP--DTLSIIFDRGLI------GMY 269 (363)
Q Consensus 198 ~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s--~~L~~a~~Rgl~------~~~ 269 (363)
.+-+|.....+ +. +-..++|||||||.|.++-.++..+.. .|+++|.+ -.+++..-+.++ ..+
T Consensus 100 Sd~KW~rl~p~--l~-----~L~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l 170 (315)
T PF08003_consen 100 SDWKWDRLLPH--LP-----DLKGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL 170 (315)
T ss_pred ccchHHHHHhh--hC-----CcCCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEc
Confidence 34567665543 32 224579999999999999999887753 24555544 122322211111 111
Q ss_pred ccccccCCCCCCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 270 HDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 270 ~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
-..-| .+|..++||+|+|-.||=|..+ +...|.++...|||||.+++-
T Consensus 171 plgvE-~Lp~~~~FDtVF~MGVLYHrr~---Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 171 PLGVE-DLPNLGAFDTVFSMGVLYHRRS---PLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred Ccchh-hccccCCcCEEEEeeehhccCC---HHHHHHHHHHhhCCCCEEEEE
Confidence 01112 3555699999999999998654 578999999999999999975
No 91
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.79 E-value=2.6e-08 Score=92.90 Aligned_cols=133 Identities=17% Similarity=0.239 Sum_probs=98.7
Q ss_pred cCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcCc-----eeeeccccccCCCCC-CCcceee
Q 017983 216 INWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL-----IGMYHDWCESFNTYP-RTYDLLH 287 (363)
Q Consensus 216 i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rgl-----~~~~~d~~e~~lpfp-~sFDlVh 287 (363)
+.....++|.|+|||+|.....|+.+ +.. .+.++|.| +||+.|..|.. .+.+++|| | ..+|+++
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A--~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~------p~~~~dllf 97 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRWPDA--VITGIDSSPAMLAKAAQRLPDATFEEADLRTWK------PEQPTDLLF 97 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhCCCC--eEeeccCCHHHHHHHHHhCCCCceecccHhhcC------CCCccchhh
Confidence 34456789999999999999999886 322 37899999 99999999976 24456664 5 8899999
Q ss_pred eccccccccccCCHHHHHHHHhHhccCCeEEEEEcC--HH--HHHHHHHHHHhCCceeeee-------------------
Q 017983 288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT--LE--MINKLKPVLHSLQWSTNIY------------------- 344 (363)
Q Consensus 288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~--~~--~~~~i~~l~~~l~W~~~~~------------------- 344 (363)
++-+|+-+++ -..+|.-+---|.|||.+.+.-. .+ .-..|.+.++..-|.....
T Consensus 98 aNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL 174 (257)
T COG4106 98 ANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL 174 (257)
T ss_pred hhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence 9999997764 35688888889999999999722 11 2245667776666654332
Q ss_pred ---cceEEEEEeccCCCC
Q 017983 345 ---HDQFLVGKKGFWRPT 359 (363)
Q Consensus 345 ---~~~~li~~K~~w~~~ 359 (363)
..++=||.+.|-++-
T Consensus 175 a~~~~rvDiW~T~Y~h~l 192 (257)
T COG4106 175 APLACRVDIWHTTYYHQL 192 (257)
T ss_pred CcccceeeeeeeeccccC
Confidence 466778888887653
No 92
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.77 E-value=2.7e-08 Score=92.12 Aligned_cols=97 Identities=19% Similarity=0.119 Sum_probs=63.7
Q ss_pred ccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcc
Q 017983 213 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYD 284 (363)
Q Consensus 213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFD 284 (363)
.+.+.. ..+|||+|||+|.+++.|++.......|+++|.+ ++++.|.++ |+ +.+.+..... .... ..||
T Consensus 72 ~l~~~~--~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~-~~~~~~~fD 148 (215)
T TIGR00080 72 LLELKP--GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQ-GWEPLAPYD 148 (215)
T ss_pred HhCCCC--cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCccc-CCcccCCCC
Confidence 344443 4599999999999999988752221236677877 778776654 33 2233322222 1223 7899
Q ss_pred eeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 285 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 285 lVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
+|++.....+ +..++.+.|+|||++++.
T Consensus 149 ~Ii~~~~~~~---------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 149 RIYVTAAGPK---------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred EEEEcCCccc---------ccHHHHHhcCcCcEEEEE
Confidence 9998765543 345688999999999885
No 93
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.77 E-value=2.8e-08 Score=100.30 Aligned_cols=114 Identities=11% Similarity=0.125 Sum_probs=74.4
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHH----hcCc--eeeeccccccC-CCCC-CCcceeeeccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIF----DRGL--IGMYHDWCESF-NTYP-RTYDLLHSSFL 291 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~----~Rgl--~~~~~d~~e~~-lpfp-~sFDlVh~~~~ 291 (363)
...+||+|||+|.++..|+...- -.+++++|.+ .++..+. .+|+ +.++...+... .+++ ++||.|++.+-
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 35899999999999999997531 1257788887 6665544 3344 33333322221 2578 99999998644
Q ss_pred cccccccC----CHHHHHHHHhHhccCCeEEEEE-cCHHHHHHHHHHHHh
Q 017983 292 LSDVTQRC----DIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHS 336 (363)
Q Consensus 292 l~~~~~~~----~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~ 336 (363)
.. |+... ....+|.|+.|+|||||.+.+. |..++...+.+....
T Consensus 202 dP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~ 250 (390)
T PRK14121 202 VP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLK 250 (390)
T ss_pred CC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHh
Confidence 32 22111 1257999999999999999886 555555555555433
No 94
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.74 E-value=4.8e-08 Score=98.53 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=72.9
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----C-----ceeeeccccccCCCCC-CCcceeeecc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----G-----LIGMYHDWCESFNTYP-RTYDLLHSSF 290 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----g-----l~~~~~d~~e~~lpfp-~sFDlVh~~~ 290 (363)
.+|||+|||+|.++..++.+.. ...|+.+|.+ .+++.+.+. + .+.++.+.+. ..++ .+||+|+|+-
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l--~~~~~~~fDlIlsNP 306 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL--SGVEPFRFNAVLCNP 306 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccc--ccCCCCCEEEEEECc
Confidence 5899999999999999987531 1247788888 778777643 1 1233333221 2345 6999999987
Q ss_pred cccccc--ccCCHHHHHHHHhHhccCCeEEEEEc--CHHHHHHHHHH
Q 017983 291 LLSDVT--QRCDIADVAVEMDRILRPGGYVLVQD--TLEMINKLKPV 333 (363)
Q Consensus 291 ~l~~~~--~~~~~~~~L~Em~RVLRPGG~lii~D--~~~~~~~i~~l 333 (363)
-|+... ......+++.+..|+|||||.++|-- ...+...++++
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~ 353 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKI 353 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHH
Confidence 776432 11124678999999999999999873 23344445543
No 95
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.74 E-value=9.7e-08 Score=85.43 Aligned_cols=97 Identities=24% Similarity=0.354 Sum_probs=64.2
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeec-cccccCCCCC-CCcceeeeccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYH-DWCESFNTYP-RTYDLLHSSFL 291 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~-d~~e~~lpfp-~sFDlVh~~~~ 291 (363)
..+|||+|||+|.++..++.+... ..|+.+|.+ ++++.+.+. ++ +.+++ |+ .-+.+ ..||+|+|+-=
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~---~~~~~~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDL---FEALPDGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESST---TTTCCTTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCccccccccccc---cccccccceeEEEEccc
Confidence 458999999999999999886433 237778888 677665442 22 33333 32 23455 99999999843
Q ss_pred cccccc--cCCHHHHHHHHhHhccCCeEEEEE
Q 017983 292 LSDVTQ--RCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 292 l~~~~~--~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
++.-.+ .....+++.+..+.|||||.+++-
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 332111 112578999999999999998543
No 96
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.74 E-value=2e-08 Score=98.02 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=69.2
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC------c-e-eeeccccccCCCCCCCc-----cee
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L-I-GMYHDWCESFNTYPRTY-----DLL 286 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg------l-~-~~~~d~~e~~lpfp~sF-----DlV 286 (363)
..+|||+|||+|.++..|++.......++++|.| +||+.+.++- + + .+..|.. ..++++..+ .++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~-~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFT-QPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEccc-chhhhhcccccCCeEEE
Confidence 3589999999999999998753212358899999 8998887761 2 1 2334432 224455222 344
Q ss_pred eeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
++...+.+++ +.+...+|+++.++|+|||.++|.
T Consensus 143 ~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4456677764 445678999999999999999985
No 97
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.72 E-value=1.1e-07 Score=90.25 Aligned_cols=129 Identities=21% Similarity=0.407 Sum_probs=82.4
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc---Cc---eeeec-cccccCCCCC-CCcceeeeccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR---GL---IGMYH-DWCESFNTYP-RTYDLLHSSFL 291 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R---gl---~~~~~-d~~e~~lpfp-~sFDlVh~~~~ 291 (363)
..+|||+|||+|.++..|+.... ...++++|.+ .+++.+.+. +. +.+++ |+ ..+++ ++||+|+++--
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSNPP 184 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEECCC
Confidence 45899999999999999987531 1257788888 788777664 11 22232 32 23455 89999998521
Q ss_pred cc--------------ccc---------ccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCce-eeee---
Q 017983 292 LS--------------DVT---------QRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWS-TNIY--- 344 (363)
Q Consensus 292 l~--------------~~~---------~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~-~~~~--- 344 (363)
+. |-+ .......++.++.++|||||++++.-....-..++.+.....+. +...
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~ 264 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDL 264 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCC
Confidence 11 000 00113568889999999999999975545556677777766554 2222
Q ss_pred --cceEEEEEe
Q 017983 345 --HDQFLVGKK 353 (363)
Q Consensus 345 --~~~~li~~K 353 (363)
.+++++++|
T Consensus 265 ~~~~r~~~~~~ 275 (275)
T PRK09328 265 AGRDRVVLGRR 275 (275)
T ss_pred CCCceEEEEEC
Confidence 456666543
No 98
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.70 E-value=6.3e-08 Score=90.36 Aligned_cols=116 Identities=19% Similarity=0.358 Sum_probs=78.0
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeeccccc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLLS 293 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l~ 293 (363)
.+|||+|||+|.++..++.... ...++++|.+ .+++.+.+. ++ +..++..+ ..+++ ++||+|+|+--+.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~--~~~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW--FEPLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch--hccCcCCceeEEEECCCCC
Confidence 5899999999999999987521 1257788887 777766543 33 23333222 23566 8999999853222
Q ss_pred c------cccc-----------------CCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCce
Q 017983 294 D------VTQR-----------------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWS 340 (363)
Q Consensus 294 ~------~~~~-----------------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~ 340 (363)
. +... .....++.++.|+|||||.+++.........+.++++...++
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~ 235 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFA 235 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCC
Confidence 1 1100 012467899999999999999987665667788888777774
No 99
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.70 E-value=9.3e-08 Score=95.23 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=68.4
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Ccee-eeccccccCCCC-CCCcceeeecccccc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG-MYHDWCESFNTY-PRTYDLLHSSFLLSD 294 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl~~-~~~d~~e~~lpf-p~sFDlVh~~~~l~~ 294 (363)
.+|||+|||+|.++..+++... ...|+.+|.+ .++..+.+. ++.. ++.. ..+.. ++.||+|+|+--||+
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~---D~~~~~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLEGEVFAS---NVFSDIKGRFDMIISNPPFHD 273 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEc---ccccccCCCccEEEECCCccC
Confidence 3799999999999999987632 1247788888 788766542 3321 2221 11233 489999999988875
Q ss_pred ccc--cCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 295 VTQ--RCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 295 ~~~--~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
... ....+.++.++.|.|||||.++|-.
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 321 2235789999999999999998864
No 100
>PLN02244 tocopherol O-methyltransferase
Probab=98.70 E-value=2e-08 Score=99.59 Aligned_cols=71 Identities=24% Similarity=0.276 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHc----CC--CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 7 DEHEAQIQFALER----GI--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 7 D~~~~qvq~A~er----g~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
|.++.|++.|.++ |+ .+.+.+.++..+||++++||+|+|..+.+|+.+ ...++.|+.|+|||||+|+++..
T Consensus 148 D~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d-~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 148 TLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPD-KRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred ECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCC-HHHHHHHHHHHcCCCcEEEEEEe
Confidence 7899999988764 54 367777889999999999999999999988875 56899999999999999999865
No 101
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.69 E-value=5e-08 Score=92.19 Aligned_cols=126 Identities=15% Similarity=0.252 Sum_probs=86.6
Q ss_pred hhccccchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCC-eEEEEeecCCc-chHHHHHhcCc-----
Q 017983 193 EAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPL-WVMNVVPIDAP-DTLSIIFDRGL----- 265 (363)
Q Consensus 193 e~F~~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v-~v~~v~~~d~s-~~L~~a~~Rgl----- 265 (363)
+.| -.+++|-.+--..|.. ....+..+||.+|||.|...--|.+... .-+.|.+.|.+ +.++...+.--
T Consensus 48 ~rF-fkdR~wL~~Efpel~~---~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~ 123 (264)
T KOG2361|consen 48 NRF-FKDRNWLLREFPELLP---VDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESR 123 (264)
T ss_pred ccc-cchhHHHHHhhHHhhC---ccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhh
Confidence 344 3456665544322332 2223334899999999987777765321 12456777888 77776665532
Q ss_pred -eeeeccccccCCCC--C-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 266 -IGMYHDWCESFNTY--P-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 266 -~~~~~d~~e~~lpf--p-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
...+.|.+.+.+.. + +++|+|++-++|+-++ ++.+..++..+.|+|||||.++++|-
T Consensus 124 ~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~-pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 124 VEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred hcccceeccchhccCCCCcCccceEEEEEEEeccC-hHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 34556666555443 3 9999999999999885 45788999999999999999999984
No 102
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.69 E-value=4.8e-08 Score=90.63 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=64.4
Q ss_pred ccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcc
Q 017983 213 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYD 284 (363)
Q Consensus 213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFD 284 (363)
.+.+.+ ..+|||+|||+|.+++.|+........|+++|.+ ++++.+.++ |+ +.+.+..+.. .+++ ..||
T Consensus 71 ~l~~~~--g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~-~~~~~~~fD 147 (212)
T PRK13942 71 LLDLKE--GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL-GYEENAPYD 147 (212)
T ss_pred HcCCCC--cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc-CCCcCCCcC
Confidence 344443 4699999999999998887642111246677877 788777665 22 3333322221 2334 8999
Q ss_pred eeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 285 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 285 lVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
+|++...++++ ..++.+.|||||.+++--
T Consensus 148 ~I~~~~~~~~~---------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 148 RIYVTAAGPDI---------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEEECCCcccc---------hHHHHHhhCCCcEEEEEE
Confidence 99998766543 346777999999998853
No 103
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.68 E-value=1.6e-07 Score=90.79 Aligned_cols=128 Identities=16% Similarity=0.244 Sum_probs=85.5
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeee-ccccccCCCCC-CCcceeeec--
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMY-HDWCESFNTYP-RTYDLLHSS-- 289 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~-~d~~e~~lpfp-~sFDlVh~~-- 289 (363)
.+|||+|||+|.++..|+.... ...++++|.+ +++..+.+. ++ +.++ .|+. .+++ +.||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~---~~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLF---EPLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh---ccCcCCCccEEEECCC
Confidence 5899999999999999987421 1257788888 788777664 22 2223 3432 2456 589999985
Q ss_pred -----------ccccccccc---------CCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHH-hCCcee-eee---
Q 017983 290 -----------FLLSDVTQR---------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLH-SLQWST-NIY--- 344 (363)
Q Consensus 290 -----------~~l~~~~~~---------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~-~l~W~~-~~~--- 344 (363)
.++.|.+.. ..+..++.+..++|+|||++++--....-..+.++.. ...|.. ...
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D~ 271 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRDL 271 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecCC
Confidence 122222210 1256789999999999999998776666677777776 456642 333
Q ss_pred --cceEEEEEe
Q 017983 345 --HDQFLVGKK 353 (363)
Q Consensus 345 --~~~~li~~K 353 (363)
.++++++++
T Consensus 272 ~g~~R~~~~~~ 282 (284)
T TIGR00536 272 NGKERVVLGFY 282 (284)
T ss_pred CCCceEEEEEe
Confidence 567777654
No 104
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=1.9e-07 Score=91.22 Aligned_cols=139 Identities=18% Similarity=0.263 Sum_probs=86.1
Q ss_pred hccccchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceee
Q 017983 194 AFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGM 268 (363)
Q Consensus 194 ~F~~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~ 268 (363)
.|-..++-=-..|.. .++.+.. +.++|||+|||+|-++.+.++.|+. .+++.|.- ..++++++.- ....
T Consensus 140 AFGTG~HpTT~lcL~-~Le~~~~---~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~ 213 (300)
T COG2264 140 AFGTGTHPTTSLCLE-ALEKLLK---KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELL 213 (300)
T ss_pred ccCCCCChhHHHHHH-HHHHhhc---CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchh
Confidence 454444444444543 3433321 4579999999999999988887754 35666765 4565555532 2111
Q ss_pred eccccccCCCCC--CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH-HHHHHHHHHHhCCceeeee
Q 017983 269 YHDWCESFNTYP--RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTNIY 344 (363)
Q Consensus 269 ~~d~~e~~lpfp--~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~~~ 344 (363)
.+.-.-..+..+ ..||+|+|+- |-+. +..+..++.|.|||||++++|--.. ..+.+.+...+-.|++.-.
T Consensus 214 ~~~~~~~~~~~~~~~~~DvIVANI-LA~v-----l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 214 VQAKGFLLLEVPENGPFDVIVANI-LAEV-----LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred hhcccccchhhcccCcccEEEehh-hHHH-----HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEE
Confidence 111111124456 5999999984 3322 4568899999999999999995433 3456666666667765444
No 105
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.66 E-value=7.8e-08 Score=94.82 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=75.4
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeecccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL 292 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l 292 (363)
..+|||.|||+|+++..++..+. .++++|.+ .|+..+... |+ +.++...+. .+|++ ++||+|+++--+
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSESVDAIATDPPY 258 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccCCCCEEEECCCC
Confidence 45899999999999877766543 46788888 787765443 33 223332233 47887 999999996211
Q ss_pred c---ccc---ccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCc
Q 017983 293 S---DVT---QRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQW 339 (363)
Q Consensus 293 ~---~~~---~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W 339 (363)
. ... ......++|.|+.|+|||||++++.-... ..++++++.-.|
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 1 000 00124789999999999999988875443 255566777666
No 106
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.64 E-value=2.2e-07 Score=84.61 Aligned_cols=111 Identities=15% Similarity=0.115 Sum_probs=69.9
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeecccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL 292 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l 292 (363)
..+|||+|||+|.++..++... ....|+++|.+ ++++.+.++ |+ +.++...+...++.. ..+|.++...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 4589999999999998887531 11246778887 787766553 32 233332222222332 4567765431
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEEcCH-HHHHHHHHHHHhCCc
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQW 339 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W 339 (363)
...+..++.++.|+|+|||++++.... +.+..+.+..+.+.+
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 160 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQA 160 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence 124678999999999999999988643 234455555555433
No 107
>PLN03075 nicotianamine synthase; Provisional
Probab=98.64 E-value=1.1e-07 Score=92.84 Aligned_cols=132 Identities=10% Similarity=0.105 Sum_probs=80.8
Q ss_pred CCceEEEecccccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhc-----Cc---ee-eeccccccCCCCC-CCcceee
Q 017983 220 SVRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDR-----GL---IG-MYHDWCESFNTYP-RTYDLLH 287 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~R-----gl---~~-~~~d~~e~~lpfp-~sFDlVh 287 (363)
..++|+|||||.|.+.+.+.. .-.....++++|.+ ++++.|++. |+ +. ..+|..+ ++-. +.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~--~~~~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD--VTESLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh--cccccCCcCEEE
Confidence 468999999999876554432 11111236677877 666655542 32 22 2233221 2223 8899999
Q ss_pred eccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH---HHHHHHHHHHHhCCceeeee-------cceEEEEEecc
Q 017983 288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL---EMINKLKPVLHSLQWSTNIY-------HDQFLVGKKGF 355 (363)
Q Consensus 288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~---~~~~~i~~l~~~l~W~~~~~-------~~~~li~~K~~ 355 (363)
|. +++++. ..+...+|..+.|.|||||+++++-.. .++..+-....--.|+.... -+-+.|.+|.-
T Consensus 201 ~~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 201 LA-ALVGMD-KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred Ee-cccccc-cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeec
Confidence 99 888873 346789999999999999999998531 11111111111116665544 35578888865
No 108
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.63 E-value=3.3e-07 Score=93.35 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=84.9
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeee-ccccccCCCCCCCcceeeeccccc-
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMY-HDWCESFNTYPRTYDLLHSSFLLS- 293 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~-~d~~e~~lpfp~sFDlVh~~~~l~- 293 (363)
.+|||+|||+|.++..|+.... ...++++|.+ .|++.+.+. +. +.++ .|+.+..+|-.++||+|+|+-=..
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 4899999999999998875321 1247788988 888877664 22 2223 343222122226899999953110
Q ss_pred ------------ccc------ccC---CHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeee-e-----cc
Q 017983 294 ------------DVT------QRC---DIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI-Y-----HD 346 (363)
Q Consensus 294 ------------~~~------~~~---~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~-~-----~~ 346 (363)
|-+ ..+ -+..++.+..+.|+|||++++--..+.-+.++++++...|+... . .+
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~d 411 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGLD 411 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCCCc
Confidence 000 001 13467788889999999998866656677888888887776432 2 57
Q ss_pred eEEEEEe
Q 017983 347 QFLVGKK 353 (363)
Q Consensus 347 ~~li~~K 353 (363)
++++.++
T Consensus 412 R~v~~~~ 418 (423)
T PRK14966 412 RVTLGKY 418 (423)
T ss_pred EEEEEEE
Confidence 7887764
No 109
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.62 E-value=5.8e-08 Score=90.29 Aligned_cols=106 Identities=14% Similarity=0.198 Sum_probs=61.4
Q ss_pred CceEEEecccccHHHHHhhcC-CCeEEEEeecCCcchHHHHHhcCceeeeccccccCCCCC-CCcceeeecccccccccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR 298 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~ 298 (363)
.-.|-|+|||.+.+|..+.+. .|.-.++++... . +..... +.+|.+ ++.|++++...|..
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~----------~---Vtacdi-a~vPL~~~svDv~VfcLSLMG---- 134 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNP----------R---VTACDI-ANVPLEDESVDVAVFCLSLMG---- 134 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-SST----------T---EEES-T-TS-S--TT-EEEEEEES---S----
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCCCC----------C---EEEecC-ccCcCCCCceeEEEEEhhhhC----
Confidence 358999999999999887542 233333333321 1 122222 368999 99999887655542
Q ss_pred CCHHHHHHHHhHhccCCeEEEEEcCHHH---HHHHHHHHHhCCceeeee
Q 017983 299 CDIADVAVEMDRILRPGGYVLVQDTLEM---INKLKPVLHSLQWSTNIY 344 (363)
Q Consensus 299 ~~~~~~L~Em~RVLRPGG~lii~D~~~~---~~~i~~l~~~l~W~~~~~ 344 (363)
-+..++|.|..|||||||.+.|.+...- ++..-+..+++..+....
T Consensus 135 Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 135 TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEE
T ss_pred CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEec
Confidence 3578899999999999999999986543 334445567777777665
No 110
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.62 E-value=1.5e-07 Score=92.11 Aligned_cols=146 Identities=19% Similarity=0.244 Sum_probs=82.6
Q ss_pred hccccchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHh----cCceee
Q 017983 194 AFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLIGM 268 (363)
Q Consensus 194 ~F~~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~----Rgl~~~ 268 (363)
.|-..++---+.|.. ++..+. . +..+|||+|||+|-++.+-++.|+. .|+++|.. ..++.+.+ .|+...
T Consensus 139 AFGTG~H~TT~lcl~-~l~~~~-~--~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~~ 212 (295)
T PF06325_consen 139 AFGTGHHPTTRLCLE-LLEKYV-K--PGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVEDR 212 (295)
T ss_dssp SS-SSHCHHHHHHHH-HHHHHS-S--TTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TTC
T ss_pred cccCCCCHHHHHHHH-HHHHhc-c--CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCee
Confidence 566666655555654 554432 2 2359999999999887777766643 35556655 34444333 343111
Q ss_pred eccccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH-HHHHHHHHHHHhCCceeeee--
Q 017983 269 YHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWSTNIY-- 344 (363)
Q Consensus 269 ~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~~~~~-- 344 (363)
+.- .....++ ..||+|+|+-...- +..++.++.+.|+|||++++|-.. +..+.|.+..+. .|+..-.
T Consensus 213 ~~v--~~~~~~~~~~~dlvvANI~~~v------L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 213 IEV--SLSEDLVEGKFDLVVANILADV------LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEERE 283 (295)
T ss_dssp EEE--SCTSCTCCS-EEEEEEES-HHH------HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEE
T ss_pred EEE--EEecccccccCCEEEECCCHHH------HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEE
Confidence 110 0123455 99999998844432 456888999999999999998432 233455555555 6655433
Q ss_pred cce--EEEEEec
Q 017983 345 HDQ--FLVGKKG 354 (363)
Q Consensus 345 ~~~--~li~~K~ 354 (363)
++. -++++|+
T Consensus 284 ~~~W~~l~~~Kk 295 (295)
T PF06325_consen 284 EGEWVALVFKKK 295 (295)
T ss_dssp ETTEEEEEEEE-
T ss_pred ECCEEEEEEEeC
Confidence 333 2445553
No 111
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.60 E-value=2.2e-07 Score=88.64 Aligned_cols=122 Identities=16% Similarity=0.262 Sum_probs=86.9
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCC-CC-CCcceeeecc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT-YP-RTYDLLHSSF 290 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lp-fp-~sFDlVh~~~ 290 (363)
..+|||+|||+|..+..|+.+--. ..+++++.. .+.+.|.+- ++ +.++++.-....+ .+ .+||+|+|+=
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 579999999999999999887211 235666666 444444332 11 4555544333333 34 6799999971
Q ss_pred ---------------ccccccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeee
Q 017983 291 ---------------LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI 343 (363)
Q Consensus 291 ---------------~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~ 343 (363)
...|..-.+++++.++=..++|||||++.+--..+.+.+|-+++++++|....
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence 11122334678999999999999999999999999999999999999998654
No 112
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.59 E-value=2.8e-07 Score=89.43 Aligned_cols=115 Identities=21% Similarity=0.270 Sum_probs=74.9
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeec--
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSS-- 289 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~-- 289 (363)
..+|||+|||+|.++..|+.... ...++++|.+ .+++.|.+. |+ +.++...+ ..+++ ++||+|+++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~--~~~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL--FAALPGRKYDLIVSNPP 198 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch--hhccCCCCccEEEECCC
Confidence 35899999999999999987521 1247788988 788777654 33 23333222 12456 789999985
Q ss_pred ----ccc-------cccccc---------CCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCc
Q 017983 290 ----FLL-------SDVTQR---------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQW 339 (363)
Q Consensus 290 ----~~l-------~~~~~~---------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W 339 (363)
..+ .|.+.. .....++.++.++|+|||++++--..+. ..++++.....|
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~ 267 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPF 267 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCC
Confidence 111 111100 1135788999999999999988654433 677777765433
No 113
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.58 E-value=1.8e-07 Score=92.24 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=64.4
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCcee-------eeccccccCCCC-CCCcceeeeccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIG-------MYHDWCESFNTY-PRTYDLLHSSFL 291 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~-------~~~d~~e~~lpf-p~sFDlVh~~~~ 291 (363)
..+|||+|||+|.++..|++.+. .|+++|.+ +|++.+.++.... ....+....++. +++||+|+|..+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 35999999999999999998764 57888999 8999888873210 000111111332 489999999999
Q ss_pred cccccccCCHHHHHHHHhHhccCCeEEE
Q 017983 292 LSDVTQRCDIADVAVEMDRILRPGGYVL 319 (363)
Q Consensus 292 l~~~~~~~~~~~~L~Em~RVLRPGG~li 319 (363)
++|+++. ....++..+.++ .+||.++
T Consensus 222 L~H~p~~-~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 222 LIHYPQD-KADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EEecCHH-HHHHHHHHHHhh-cCCEEEE
Confidence 9998753 344566677654 5565544
No 114
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.58 E-value=2.6e-07 Score=85.04 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=61.5
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC--CCcceeeeccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP--RTYDLLHSSFL 291 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp--~sFDlVh~~~~ 291 (363)
..+|||+|||+|.++..|+.... .++.+|.+ ++++.+.++ |+ +.+.+.... .+++ ++||+|++...
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~--~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGW--KGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcc--cCCCcCCCcCEEEEccC
Confidence 46999999999999888776532 46677777 777766654 32 233332222 2333 89999999876
Q ss_pred cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
+.+ +..++.+.|+|||.+++.-.
T Consensus 154 ~~~---------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APE---------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chh---------hhHHHHHhcCCCcEEEEEEc
Confidence 554 34567899999999998643
No 115
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.55 E-value=5e-07 Score=88.69 Aligned_cols=112 Identities=20% Similarity=0.209 Sum_probs=72.4
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeecc--
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSF-- 290 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~-- 290 (363)
.+|||+|||+|.++.+|+.... ...|+++|.+ .+++.|.+. |+ +.+++... ..+++ ++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~--~~~l~~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDL--FAALPGRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECch--hhhCCCCCccEEEECCCC
Confidence 5899999999999999987521 1357888988 788776654 32 33333211 12345 7899999861
Q ss_pred ----c-------ccccccc---------CCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhC
Q 017983 291 ----L-------LSDVTQR---------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSL 337 (363)
Q Consensus 291 ----~-------l~~~~~~---------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l 337 (363)
. +.|.+.. .....++.++.++|+|||++++--... ...+.++....
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 0 1121110 113578999999999999999854433 34566666543
No 116
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.55 E-value=7.5e-08 Score=79.48 Aligned_cols=98 Identities=17% Similarity=0.265 Sum_probs=63.9
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c---eeeeccccccCC-CCC-CCcceeeeccc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L---IGMYHDWCESFN-TYP-RTYDLLHSSFL 291 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l---~~~~~d~~e~~l-pfp-~sFDlVh~~~~ 291 (363)
.+|||+|||+|.++.++++.+ ...+.++|.. ..++.++.+- + +.++........ +++ +.||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 489999999999999988765 2356777877 5566555432 1 223322222222 467 99999999865
Q ss_pred ccccc-----ccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 292 LSDVT-----QRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 292 l~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
+.... .......++.++.|+|||||.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 55321 1112467899999999999999875
No 117
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.54 E-value=6.7e-08 Score=92.56 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHcCC---CceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALERGI---PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~---p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.++.+++.|.++.. .+.+...++..+||++++||+|++..+++|+.. +...+|+++.|+|||||+|+++.+
T Consensus 81 iD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 81 VDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3789999999998732 355666777889999999999999888888863 567899999999999999999866
No 118
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.50 E-value=1.8e-07 Score=87.64 Aligned_cols=99 Identities=24% Similarity=0.445 Sum_probs=71.2
Q ss_pred CCCCCceEEEecccccHHHHHhhcC-C-CeEEEEeecCCcchHHHHHhcCceee-eccccccCCCCCCCcceeeeccccc
Q 017983 217 NWSSVRNVMDMNASYGGFAAALIDQ-P-LWVMNVVPIDAPDTLSIIFDRGLIGM-YHDWCESFNTYPRTYDLLHSSFLLS 293 (363)
Q Consensus 217 ~~~~~r~VLDvGCG~G~faa~L~~~-~-v~v~~v~~~d~s~~L~~a~~Rgl~~~-~~d~~e~~lpfp~sFDlVh~~~~l~ 293 (363)
...+.++|||||+|.|.++.++++. + .. ++-.|.+..++.+.+..-+.. -+|. +-|+|. +|+++.+++||
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~---~~v~Dlp~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~vLh 169 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLR---ATVFDLPEVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRHVLH 169 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSE---EEEEE-HHHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEESSGG
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCc---ceeeccHhhhhccccccccccccccH---Hhhhcc-ccceeeehhhh
Confidence 4456789999999999999999873 2 32 344566655555555333333 3442 356778 99999999999
Q ss_pred cccccCCHHHHHHHHhHhccCC--eEEEEEcC
Q 017983 294 DVTQRCDIADVAVEMDRILRPG--GYVLVQDT 323 (363)
Q Consensus 294 ~~~~~~~~~~~L~Em~RVLRPG--G~lii~D~ 323 (363)
+|++. ....+|+.+.+.|+|| |+++|.|.
T Consensus 170 ~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 170 DWSDE-DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GS-HH-HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hcchH-HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 99764 5678999999999999 99999874
No 119
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.50 E-value=2.3e-07 Score=92.07 Aligned_cols=120 Identities=18% Similarity=0.275 Sum_probs=73.2
Q ss_pred hhHHHHH-HHhhhhccccCCCCCceEEEecccccH-HHHHhhcCCCeEEEEeecCCc-chHHHHHhcC------------
Q 017983 200 THWYALV-SDVYVGGLAINWSSVRNVMDMNASYGG-FAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------------ 264 (363)
Q Consensus 200 ~~W~~~~-~~~y~~~l~i~~~~~r~VLDvGCG~G~-faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg------------ 264 (363)
..|.+.+ ...|...+. ...+..+|||||||-|+ +..+... + +-.++++|.+ ..++.|.+|.
T Consensus 42 NNwvKs~LI~~~~~~~~-~~~~~~~VLDl~CGkGGDL~Kw~~~-~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~ 117 (331)
T PF03291_consen 42 NNWVKSVLIQKYAKKVK-QNRPGLTVLDLCCGKGGDLQKWQKA-K--IKHYVGIDISEESIEEARERYKQLKKRNNSKQY 117 (331)
T ss_dssp HHHHHHHHHHHHCHCCC-CTTTT-EEEEET-TTTTTHHHHHHT-T---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTS
T ss_pred hHHHHHHHHHHHHHhhh-ccCCCCeEEEecCCCchhHHHHHhc-C--CCEEEEEeCCHHHHHHHHHHHHHhccccccccc
Confidence 5576644 233544222 11256799999999887 4444433 3 2347888888 7788888776
Q ss_pred ---c-eeeecccccc-----CCCCC-CCcceeeecccccccc-ccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 265 ---L-IGMYHDWCES-----FNTYP-RTYDLLHSSFLLSDVT-QRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 265 ---l-~~~~~d~~e~-----~lpfp-~sFDlVh~~~~l~~~~-~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
. ...+...|.. .++.+ ..||+|-|-++||+.= +......+|.-+.+.|||||+||.+-.
T Consensus 118 ~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 118 RFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp EECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 1 1122222321 12333 5999999999999742 333467799999999999999999854
No 120
>PRK05785 hypothetical protein; Provisional
Probab=98.50 E-value=1.1e-07 Score=89.23 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCe-EEEEEeC
Q 017983 6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGG-FFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG-~~~~s~~ 78 (363)
-|.|+.+++.|.++. ...+.+++.|||++++||+|+|+.+++|+. +...+|+|+.|||||.+ .+-++.|
T Consensus 80 vD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~-d~~~~l~e~~RvLkp~~~ile~~~p 149 (226)
T PRK05785 80 LDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHASD-NIEKVIAEFTRVSRKQVGFIAMGKP 149 (226)
T ss_pred ECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhccC-CHHHHHHHHHHHhcCceEEEEeCCC
Confidence 489999999999874 234667899999999999999999886655 57789999999999953 4444443
No 121
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.48 E-value=8.2e-07 Score=90.68 Aligned_cols=102 Identities=15% Similarity=0.202 Sum_probs=65.2
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cce-ee-eccccccCCCC--C-CCcceeeec
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI-GM-YHDWCESFNTY--P-RTYDLLHSS 289 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl~-~~-~~d~~e~~lpf--p-~sFDlVh~~ 289 (363)
+..+|||+|||+|+.+..++..-- ...|+++|.+ +++..+.++ |+. .+ ..+......++ + ++||.|++.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 346999999999999988886421 1247788888 777665544 431 11 12111112333 5 889999952
Q ss_pred ------ccccccccc------C-------CHHHHHHHHhHhccCCeEEEEEc
Q 017983 290 ------FLLSDVTQR------C-------DIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 290 ------~~l~~~~~~------~-------~~~~~L~Em~RVLRPGG~lii~D 322 (363)
.++++.++- . .-..+|.++.|+|||||+++++.
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 344432210 0 02579999999999999999983
No 122
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.48 E-value=2.6e-07 Score=88.61 Aligned_cols=66 Identities=26% Similarity=0.364 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983 6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP 79 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~ 79 (363)
-|+|+.+++.|.++...+.+.+.++..|||++++||+|++..+ ...+.|+.|+|||||+|++..|.
T Consensus 118 iD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~--------~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 118 LDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA--------PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred ECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC--------CCCHHHHHhhccCCCEEEEEeCC
Confidence 4999999999998876677788889999999999999998643 14679999999999999998773
No 123
>PRK04457 spermidine synthase; Provisional
Probab=98.44 E-value=1.5e-06 Score=83.50 Aligned_cols=100 Identities=7% Similarity=0.080 Sum_probs=66.5
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-c------eeeeccccccCCC-CCCCcceeeecc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-L------IGMYHDWCESFNT-YPRTYDLLHSSF 290 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-l------~~~~~d~~e~~lp-fp~sFDlVh~~~ 290 (363)
..++|||+|||.|.++.+++.... ...++.+|.. ++++.|.+.- . +.++...+..++. .+.+||+|++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D- 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD- 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe-
Confidence 357999999999999998876421 2346777876 7888887652 1 2233332222232 24789999986
Q ss_pred cccc--ccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 291 LLSD--VTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 291 ~l~~--~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
.+.. .+.......++.++.++|+|||.+++.
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3332 111112368999999999999999983
No 124
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.43 E-value=1.1e-06 Score=83.74 Aligned_cols=121 Identities=16% Similarity=0.080 Sum_probs=78.3
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----CceeeeccccccCCC--CCCCcceeeeccccc-
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDWCESFNT--YPRTYDLLHSSFLLS- 293 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl~~~~~d~~e~~lp--fp~sFDlVh~~~~l~- 293 (363)
.+|||+|||+|.++..|+.... ...++++|.+ .+++.+.+. |......|+. ..++ +.+.||+|+++-=..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~-~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGGTVHEGDLY-DALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeech-hhcchhcCCCEeEEEECCCCCC
Confidence 4899999999999998876411 1246778887 777766543 2211223322 2232 236799999862111
Q ss_pred -------------cccc------cC---CHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeeee
Q 017983 294 -------------DVTQ------RC---DIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY 344 (363)
Q Consensus 294 -------------~~~~------~~---~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~ 344 (363)
|.+. .. -+.+++....++|||||.+++.-..+....+..+++...|+..+.
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVA 238 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceee
Confidence 1000 00 134778888899999999999876666778888888777776554
No 125
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.43 E-value=1.3e-07 Score=93.63 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHcC----C--CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALERG----I--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~erg----~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.++.++++|+++. . .+.+...+++.+|+++++||+|+|..+++|+.+ +..+|.|+.|+|||||.++++..
T Consensus 159 ID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d-~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 159 VDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVAN-PAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred EeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCC-HHHHHHHHHHHcCCCcEEEEEEC
Confidence 388999999998762 1 355666678899999999999999999988775 67899999999999999999965
No 126
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.42 E-value=1.9e-07 Score=88.39 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.|+.+++.|+++++ .+...+++.++ ++++||+|+|+.+++|.. +...++.++.|+|||||+|++..+
T Consensus 59 vD~s~~~~~~a~~~~~--~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 59 LDSSPEMVAAARERGV--DARTGDVRDWK-PKPDTDVVVSNAALQWVP-EHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred EECCHHHHHHHHhcCC--cEEEcChhhCC-CCCCceEEEEehhhhhCC-CHHHHHHHHHHhCCCCcEEEEEcC
Confidence 4889999999999875 45556777775 678999999998876544 567899999999999999999866
No 127
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.42 E-value=1e-06 Score=92.09 Aligned_cols=116 Identities=16% Similarity=0.352 Sum_probs=77.3
Q ss_pred CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc---eeee-ccccccCCCCC-CCcceeeec
Q 017983 221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMY-HDWCESFNTYP-RTYDLLHSS 289 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~-~d~~e~~lpfp-~sFDlVh~~ 289 (363)
..+|||+|||+|.++..|+.. +. ..++++|.+ .+++.|.+. |+ +.++ .|+ ..+++ ++||+|+|+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~--~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~---~~~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN--ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW---FENIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch---hhhCcCCCccEEEEC
Confidence 358999999999999888753 21 247788888 788877665 32 2222 232 12345 789999984
Q ss_pred c--------------cccccc------ccC---CHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCcee
Q 017983 290 F--------------LLSDVT------QRC---DIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWST 341 (363)
Q Consensus 290 ~--------------~l~~~~------~~~---~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~ 341 (363)
- +..|.+ ..+ .+..++.++.++|+|||.+++.-....-+.+.+++....|+.
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~ 288 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNI 288 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCc
Confidence 1 111111 011 134578899999999999998755556677888887777764
No 128
>PRK00811 spermidine synthase; Provisional
Probab=98.41 E-value=6.1e-07 Score=87.00 Aligned_cols=101 Identities=11% Similarity=0.114 Sum_probs=67.2
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC------c-----eeeeccccccCCCCC-CCccee
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L-----IGMYHDWCESFNTYP-RTYDLL 286 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg------l-----~~~~~d~~e~~lpfp-~sFDlV 286 (363)
..++|||+|||.|+++.++++++ .+..|+.++.. ++++.+.+.- . +.++...+...+... ++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45799999999999999998863 12256777777 6787776531 1 223333333345445 899999
Q ss_pred eecccccccccc-CCHHHHHHHHhHhccCCeEEEEE
Q 017983 287 HSSFLLSDVTQR-CDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 287 h~~~~l~~~~~~-~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
++...-...+.. -.-+.++.++.|+|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 986432211110 01256789999999999999985
No 129
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.40 E-value=9.2e-07 Score=87.53 Aligned_cols=98 Identities=16% Similarity=0.107 Sum_probs=62.9
Q ss_pred hccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCc
Q 017983 212 GGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTY 283 (363)
Q Consensus 212 ~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sF 283 (363)
+.+.+++ ..+|||+|||+|.+++.|++.......|+++|.+ ++++.|.++ |+ +...+..+.. .+.+ ..|
T Consensus 74 ~~L~i~~--g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~-~~~~~~~f 150 (322)
T PRK13943 74 EWVGLDK--GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYY-GVPEFAPY 150 (322)
T ss_pred HhcCCCC--CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhh-cccccCCc
Confidence 3344443 3599999999999999988642111135677877 788776653 33 2222222222 2334 789
Q ss_pred ceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 284 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 284 DlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
|+|++...+.+ ....+.++|||||.+++.
T Consensus 151 D~Ii~~~g~~~---------ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 151 DVIFVTVGVDE---------VPETWFTQLKEGGRVIVP 179 (322)
T ss_pred cEEEECCchHH---------hHHHHHHhcCCCCEEEEE
Confidence 99999855543 334567899999998884
No 130
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.40 E-value=1.8e-06 Score=88.32 Aligned_cols=115 Identities=20% Similarity=0.271 Sum_probs=70.4
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCC-CC-CCcceeee---
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNT-YP-RTYDLLHS--- 288 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lp-fp-~sFDlVh~--- 288 (363)
+..+|||+|||+|+.+..+++.... ..|+++|.+ +++..+.++ |+ +.++...+....+ ++ ++||.|++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 3469999999999999998875311 247788888 777766554 32 2222222222122 45 78999994
Q ss_pred -cc--cccccc------ccCC-------HHHHHHHHhHhccCCeEEEEEcC----HHHHHHHHHHHH
Q 017983 289 -SF--LLSDVT------QRCD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLH 335 (363)
Q Consensus 289 -~~--~l~~~~------~~~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~ 335 (363)
+. .+.+-+ +..+ ..++|.+..++|||||+++++.- .+....+..+++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~ 389 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLA 389 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHH
Confidence 32 111100 1111 23689999999999999998752 333345555554
No 131
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.37 E-value=1.9e-06 Score=88.24 Aligned_cols=115 Identities=16% Similarity=0.140 Sum_probs=71.9
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC----CC-CCcceeee
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT----YP-RTYDLLHS 288 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp----fp-~sFDlVh~ 288 (363)
..+|||+|||+|+.+..|+..--....|+++|.+ ++++.+.++ |+ +.++....+ .++ +. ++||.|++
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~-~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR-NLLELKPQWRGYFDRILL 331 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChh-hcccccccccccCCEEEE
Confidence 4689999999999998887641111246778887 777666543 33 233322222 233 44 89999996
Q ss_pred c------ccccccccc------CC-------HHHHHHHHhHhccCCeEEEEEc----CHHHHHHHHHHHHh
Q 017983 289 S------FLLSDVTQR------CD-------IADVAVEMDRILRPGGYVLVQD----TLEMINKLKPVLHS 336 (363)
Q Consensus 289 ~------~~l~~~~~~------~~-------~~~~L~Em~RVLRPGG~lii~D----~~~~~~~i~~l~~~ 336 (363)
. .++++-++. .+ ..++|.++.++|||||+++.++ ..+....|..+++.
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 3 234332210 01 2578999999999999999875 22445556666554
No 132
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.37 E-value=1.2e-06 Score=89.92 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=68.8
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeec---
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSS--- 289 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~--- 289 (363)
..+|||+|||+|+.+..+++.-.....|+++|.+ ++++.+.++ |+ +.+....+.. ++ + ++||+|++.
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~-~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARS-FS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccc-cc-cCCCCCEEEEcCCC
Confidence 4699999999999887776531011247788888 787766544 43 2222221221 22 4 889999952
Q ss_pred ---ccccccc------ccCC-------HHHHHHHHhHhccCCeEEEEEcC----HHHHHHHHHHHHh
Q 017983 290 ---FLLSDVT------QRCD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHS 336 (363)
Q Consensus 290 ---~~l~~~~------~~~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~ 336 (363)
..+..-+ ...+ ...+|.++.++|||||+++++.- .+.-..|..++++
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 1221100 0011 13589999999999999999862 2234455555543
No 133
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.36 E-value=1.3e-06 Score=89.49 Aligned_cols=115 Identities=18% Similarity=0.176 Sum_probs=69.7
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC-CC-CCcceeeec-
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT-YP-RTYDLLHSS- 289 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp-fp-~sFDlVh~~- 289 (363)
+..+|||+|||+|+.+.+++..--....|+++|.+ ++++.+.++ |+ +.+.+.... .++ +. ++||.|++.
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccCCEEEECC
Confidence 34689999999999888877631011247788888 788766554 43 223322222 234 55 889999963
Q ss_pred --cccccccccC----------------CHHHHHHHHhHhccCCeEEEEEcC----HHHHHHHHHHHH
Q 017983 290 --FLLSDVTQRC----------------DIADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLH 335 (363)
Q Consensus 290 --~~l~~~~~~~----------------~~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~ 335 (363)
..+..+.... .-.++|.+..+.|||||.++.+.- .+.-..|+.++.
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 1111111100 114679999999999999999842 233344555443
No 134
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=3.5e-06 Score=81.76 Aligned_cols=113 Identities=21% Similarity=0.339 Sum_probs=79.0
Q ss_pred eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cce---eeeccccccCCCCCCCcceeeec-----
Q 017983 223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---GMYHDWCESFNTYPRTYDLLHSS----- 289 (363)
Q Consensus 223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl~---~~~~d~~e~~lpfp~sFDlVh~~----- 289 (363)
+|||+|||+|..|.+|+..... .+|+++|.+ ..+..|.+- |+. .+..|| +.+.++.||+|+|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl---f~~~~~~fDlIVsNPPYip 188 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDL---FEPLRGKFDLIVSNPPYIP 188 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec---ccccCCceeEEEeCCCCCC
Confidence 8999999999999999986432 368899998 777665443 431 122233 34455799999986
Q ss_pred -c-------ccccc------cccC---CHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCc
Q 017983 290 -F-------LLSDV------TQRC---DIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQW 339 (363)
Q Consensus 290 -~-------~l~~~------~~~~---~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W 339 (363)
. ++.|- ...+ -...++.+..++|+|||.+++.-.......++++.....+
T Consensus 189 ~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~ 255 (280)
T COG2890 189 AEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGF 255 (280)
T ss_pred CcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCC
Confidence 1 00010 0111 2467889999999999999998776777888888888884
No 135
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.35 E-value=1.4e-06 Score=80.17 Aligned_cols=114 Identities=18% Similarity=0.262 Sum_probs=69.7
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-ch----HHHHHhcCc--eeeeccccccCCC--CC-CCcceeeeccc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DT----LSIIFDRGL--IGMYHDWCESFNT--YP-RTYDLLHSSFL 291 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~----L~~a~~Rgl--~~~~~d~~e~~lp--fp-~sFDlVh~~~~ 291 (363)
..+||+|||.|.|...++...-. .++++++.. +. +..+..+++ +.++...+...+. ++ +++|.|+..+-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 38999999999999999874211 246666765 43 344555565 3344432322222 45 99999987633
Q ss_pred cc-----cccccCCHHHHHHHHhHhccCCeEEEEE-cCHHHHHHHHHHHHh
Q 017983 292 LS-----DVTQRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHS 336 (363)
Q Consensus 292 l~-----~~~~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~ 336 (363)
=. |...+---..+|.++.|+|+|||.+.+. |..++...+.+.+..
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 22 2111111267999999999999999886 555566666666655
No 136
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.34 E-value=9.4e-07 Score=84.51 Aligned_cols=104 Identities=16% Similarity=0.226 Sum_probs=70.7
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCceeeeccccccCCCCC-CCcceeeeccccccccccCC
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCD 300 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~ 300 (363)
-.|-|+|||-+-+|..- ...|..+++++.... +..... ...|.+ +|.|++++ ||+.+. .+
T Consensus 182 ~vIaD~GCGEakiA~~~-~~kV~SfDL~a~~~~-------------V~~cDm-~~vPl~d~svDvaV~--CLSLMg--tn 242 (325)
T KOG3045|consen 182 IVIADFGCGEAKIASSE-RHKVHSFDLVAVNER-------------VIACDM-RNVPLEDESVDVAVF--CLSLMG--TN 242 (325)
T ss_pred eEEEecccchhhhhhcc-ccceeeeeeecCCCc-------------eeeccc-cCCcCccCcccEEEe--eHhhhc--cc
Confidence 47999999999887522 235677777666532 111111 248999 99998776 455433 36
Q ss_pred HHHHHHHHhHhccCCeEEEEEcCHHHHHH---HHHHHHhCCceeeee
Q 017983 301 IADVAVEMDRILRPGGYVLVQDTLEMINK---LKPVLHSLQWSTNIY 344 (363)
Q Consensus 301 ~~~~L~Em~RVLRPGG~lii~D~~~~~~~---i~~l~~~l~W~~~~~ 344 (363)
+.+++.|.+|||||||.++|.+...-... ..+-...|.++....
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence 88999999999999999999876543323 344446777776554
No 137
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.34 E-value=6.7e-07 Score=85.31 Aligned_cols=73 Identities=21% Similarity=0.202 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP 79 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~ 79 (363)
-|.++.+++.|+++ |++ +.+...+.+.+||++++||+|++..+++++. +...++.|+.|+|||||+|+++...
T Consensus 108 vD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~-d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 108 VDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVINLSP-DKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred ECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcccCCC-CHHHHHHHHHHHcCCCcEEEEEEee
Confidence 48899999999875 443 4455567888999999999999986665444 4567999999999999999998653
No 138
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.30 E-value=4e-06 Score=80.38 Aligned_cols=102 Identities=13% Similarity=0.121 Sum_probs=63.6
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeec--
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSS-- 289 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~-- 289 (363)
+..+|||+|||+|+.+..|+..-.....|+++|.+ .+++.+.++ |+ +.+++..+. .++.. +.||.|++.
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~-~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGR-VFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHH-HhhhhccCCCEEEEcCC
Confidence 34689999999999998877631111146788888 777655443 33 233333222 23444 779999863
Q ss_pred ----cccccccc------cC-------CHHHHHHHHhHhccCCeEEEEEc
Q 017983 290 ----FLLSDVTQ------RC-------DIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 290 ----~~l~~~~~------~~-------~~~~~L~Em~RVLRPGG~lii~D 322 (363)
.++.+-++ .. .-.++|.++.+.|||||+++.+.
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 12221110 00 11458999999999999999984
No 139
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.30 E-value=3.2e-06 Score=79.84 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=75.3
Q ss_pred CCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCC-----CC-CCcc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT-----YP-RTYD 284 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lp-----fp-~sFD 284 (363)
+.++|||+|||+|.-+.+|+.. +. ...++.+|.+ ++++.|.+. |+ +.++...+...++ .+ .+||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 3579999999999866666542 11 1135666766 566655443 33 2333322222222 23 6899
Q ss_pred eeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH-----------------HHHHHHHHHHH----hCCceeee
Q 017983 285 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-----------------EMINKLKPVLH----SLQWSTNI 343 (363)
Q Consensus 285 lVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-----------------~~~~~i~~l~~----~l~W~~~~ 343 (363)
+|++..- +.....++.++.|.|||||.+++.+.. .....|+++.+ .=++...+
T Consensus 147 ~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~ 220 (234)
T PLN02781 147 FAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQ 220 (234)
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEE
Confidence 9988622 234567899999999999998874310 12234444433 33444433
Q ss_pred e--cceEEEEEec
Q 017983 344 Y--HDQFLVGKKG 354 (363)
Q Consensus 344 ~--~~~~li~~K~ 354 (363)
. .+.+++++|.
T Consensus 221 lp~gdG~~i~~k~ 233 (234)
T PLN02781 221 ISIGDGVTLCRRL 233 (234)
T ss_pred EEeCCccEEEEEe
Confidence 3 6788888875
No 140
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.29 E-value=6.3e-07 Score=89.28 Aligned_cols=102 Identities=17% Similarity=0.098 Sum_probs=73.3
Q ss_pred CCCCHHHHHHHHHcC--CCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCC
Q 017983 6 KDEHEAQIQFALERG--IPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRH 83 (363)
Q Consensus 6 ~D~~~~qvq~A~erg--~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~ 83 (363)
-|.++.+++.|+++. -.+.+...+++.+||++++||+|+|+.++++|.+ ...+|+|+.|+|||||++++..+..-..
T Consensus 143 VD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d-~~~~L~e~~rvLkPGG~LvIi~~~~p~~ 221 (340)
T PLN02490 143 LDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPD-PQRGIKEAYRVLKIGGKACLIGPVHPTF 221 (340)
T ss_pred EECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCC-HHHHHHHHHHhcCCCcEEEEEEecCcch
Confidence 378999999998873 2345566778889999999999999988877775 5689999999999999999876532111
Q ss_pred Chh--hHH------HHHHHHHHHhhcceEEEEE
Q 017983 84 DDR--HRS------VWNAMVNLTESMCWKAVAR 108 (363)
Q Consensus 84 ~~e--~~~------~~~~~~~l~~~~cw~~~~~ 108 (363)
|.. ... ..+++.++++...++.+.-
T Consensus 222 ~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 222 WLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred hHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 111 001 1245666777777776653
No 141
>PRK01581 speE spermidine synthase; Validated
Probab=98.29 E-value=1.6e-06 Score=87.07 Aligned_cols=103 Identities=14% Similarity=0.188 Sum_probs=69.3
Q ss_pred CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc--------C-c----eeeeccccccCCCCC-CCc
Q 017983 219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR--------G-L----IGMYHDWCESFNTYP-RTY 283 (363)
Q Consensus 219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R--------g-l----~~~~~d~~e~~lpfp-~sF 283 (363)
.+.++||++|||+|+.++.+.+++ .+..|+.+|.. +++++|.+. + + +.+..+.+..++.-. +.|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 345799999999999999888764 23357777887 789988851 1 1 222332233345444 889
Q ss_pred ceeeecccccccc---ccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 284 DLLHSSFLLSDVT---QRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 284 DlVh~~~~l~~~~---~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
|+|++... .... ..-.-..++..+.|.|+|||.+++...
T Consensus 228 DVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99998832 1110 001125688999999999999988754
No 142
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.28 E-value=2.7e-06 Score=87.26 Aligned_cols=116 Identities=17% Similarity=0.236 Sum_probs=69.5
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCC-CCCCCcceeeecc--
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFN-TYPRTYDLLHSSF-- 290 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~l-pfp~sFDlVh~~~-- 290 (363)
..+|||+|||+|+++..+++.-.....|+++|.+ ++++.+.++ |+ +.+++....... +++++||+|++.-
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 330 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPC 330 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCC
Confidence 4689999999999998888641011246778887 677665543 33 233332222222 2458999999741
Q ss_pred ----ccccccc------cCC-------HHHHHHHHhHhccCCeEEEEEcC----HHHHHHHHHHHHh
Q 017983 291 ----LLSDVTQ------RCD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHS 336 (363)
Q Consensus 291 ----~l~~~~~------~~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~ 336 (363)
.+.+-++ ..+ ...+|.+..|+|||||.++.+.- .+.-..++.+++.
T Consensus 331 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~ 397 (444)
T PRK14902 331 SGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEE 397 (444)
T ss_pred CCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHh
Confidence 2221110 011 13589999999999999997642 1233455555544
No 143
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.27 E-value=5.7e-06 Score=65.55 Aligned_cols=94 Identities=26% Similarity=0.390 Sum_probs=60.7
Q ss_pred EEEecccccHH--HHHhhcCCCeEEEEeecCCc-chHHHHHhcC-------ceeeeccccccCCCCCC--Ccceeeeccc
Q 017983 224 VMDMNASYGGF--AAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-------LIGMYHDWCESFNTYPR--TYDLLHSSFL 291 (363)
Q Consensus 224 VLDvGCG~G~f--aa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-------l~~~~~d~~e~~lpfp~--sFDlVh~~~~ 291 (363)
+||+|||+|.. ...+...+.. ++++|.+ .++..+..+. ......+.....+++.. +||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAY---VVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCce---EEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 99999999984 4444433222 3446766 5666544433 11222332111367773 89999 6656
Q ss_pred cccccccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983 292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 324 (363)
Q Consensus 292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 324 (363)
..++.. ....+.++.|+|+|||.+++.+..
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 555433 678999999999999999998654
No 144
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.26 E-value=2.2e-06 Score=80.93 Aligned_cols=94 Identities=20% Similarity=0.198 Sum_probs=67.1
Q ss_pred CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCCh
Q 017983 6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDD 85 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~ 85 (363)
-|.++.+++.|+++--.+.+...++..++ ++++||+|+|+.+++ |..+...++.++.|+|||||.|+++.+.. +.
T Consensus 61 vD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~-~~~d~~~~l~~~~~~LkpgG~~~~~~~~~---~~ 135 (258)
T PRK01683 61 IDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQ-WLPDHLELFPRLVSLLAPGGVLAVQMPDN---LD 135 (258)
T ss_pred EECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChh-hCCCHHHHHHHHHHhcCCCcEEEEECCCC---CC
Confidence 38899999999988544566667776665 557999999998874 55556789999999999999999987632 11
Q ss_pred hhHHHHHHHHHHHhhcceEEE
Q 017983 86 RHRSVWNAMVNLTESMCWKAV 106 (363)
Q Consensus 86 e~~~~~~~~~~l~~~~cw~~~ 106 (363)
+ ..+..+.+++...-|...
T Consensus 136 ~--~~~~~~~~~~~~~~w~~~ 154 (258)
T PRK01683 136 E--PSHVLMREVAENGPWEQN 154 (258)
T ss_pred C--HHHHHHHHHHccCchHHH
Confidence 1 112345555555555443
No 145
>PRK08317 hypothetical protein; Provisional
Probab=98.25 E-value=1.3e-06 Score=79.83 Aligned_cols=72 Identities=32% Similarity=0.499 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.++.+++.|+++ +..+.+...+.+.+||++++||+|++..+++|+.+ ...++.++.++|||||++++..+
T Consensus 50 ~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 50 IDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLED-PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred EeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhccCC-HHHHHHHHHHHhcCCcEEEEEec
Confidence 37889999999887 23355566678889999999999999999888764 67899999999999999999865
No 146
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.25 E-value=1.2e-06 Score=80.46 Aligned_cols=72 Identities=24% Similarity=0.295 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHcCCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALERGIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.++.+++.|.++..+ +.+...+.+.+||++++||+|+|+.+++| ..+...+|.++.|+|||||+|+++.+
T Consensus 64 ~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~-~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 64 LDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQW-CDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred EeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhh-ccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 47889999999888543 45566778889999999999999988754 44577899999999999999999876
No 147
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.25 E-value=8.1e-07 Score=85.32 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHc--------CC------------------------CceeeecccCCCCCCCCCccEEEeCCcccccc
Q 017983 6 KDEHEAQIQFALER--------GI------------------------PAILSVIGTQKLTFPDDAYDLIHCARCRVHWD 53 (363)
Q Consensus 6 ~D~~~~qvq~A~er--------g~------------------------p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~ 53 (363)
-|+++.+++.|++. ++ .+.+.+.+...+|+++++||+|+|+.+++|+.
T Consensus 138 ~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~ 217 (264)
T smart00138 138 TDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD 217 (264)
T ss_pred EECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC
Confidence 48999999999864 12 24556677778888999999999999998886
Q ss_pred cC-CCchhhhhcccccCCeEEEEEeC
Q 017983 54 AQ-GGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 54 ~~-~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
+. ...++.++.|+|+|||+|++...
T Consensus 218 ~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 218 EPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 42 35799999999999999999754
No 148
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.24 E-value=4e-06 Score=77.48 Aligned_cols=128 Identities=20% Similarity=0.257 Sum_probs=73.2
Q ss_pred hccccchhHHHHHHHhhhh-ccc-cCCCCCceEEEecccccH----HHHHhhc--C--CCeEEEEeecCCc-chHHHHHh
Q 017983 194 AFNKDTTHWYALVSDVYVG-GLA-INWSSVRNVMDMNASYGG----FAAALID--Q--PLWVMNVVPIDAP-DTLSIIFD 262 (363)
Q Consensus 194 ~F~~~~~~W~~~~~~~y~~-~l~-i~~~~~r~VLDvGCG~G~----faa~L~~--~--~v~v~~v~~~d~s-~~L~~a~~ 262 (363)
.|-.+...|...... .+. .+. ...+..-+|+..||++|. +|..|.+ . ..+-..|.++|.+ ..|+.|..
T Consensus 4 ~FFRd~~~f~~l~~~-vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 4 YFFRDPEQFEALRDE-VLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp -TTTTTTHHHHHHHH-HH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred cccCCHHHHHHHHHH-HHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 355677778766553 331 121 122345789999999993 5555555 1 2234678999998 78877643
Q ss_pred c--------Cc---------------------------eeeeccccccCCCCCCCcceeeeccccccccccCCHHHHHHH
Q 017983 263 R--------GL---------------------------IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVE 307 (363)
Q Consensus 263 R--------gl---------------------------~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~E 307 (363)
- ++ .-..|+.++ ..|.++.||+|+|..+|.++.. .....++.-
T Consensus 83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~-~~~~~vl~~ 160 (196)
T PF01739_consen 83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDP-ETQQRVLRR 160 (196)
T ss_dssp TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-H-HHHHHHHHH
T ss_pred CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCH-HHHHHHHHH
Confidence 2 10 012344333 1222399999999999999964 346789999
Q ss_pred HhHhccCCeEEEEEcCH
Q 017983 308 MDRILRPGGYVLVQDTL 324 (363)
Q Consensus 308 m~RVLRPGG~lii~D~~ 324 (363)
+++.|+|||++++....
T Consensus 161 l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 161 LHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HGGGEEEEEEEEE-TT-
T ss_pred HHHHcCCCCEEEEecCc
Confidence 99999999999998653
No 149
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.23 E-value=2.5e-07 Score=75.13 Aligned_cols=66 Identities=26% Similarity=0.407 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHcC----CCceeeecccCCCCCCCCCccEEEeCCc-ccccccC-CCchhhhhcccccCCe
Q 017983 6 KDEHEAQIQFALERG----IPAILSVIGTQKLTFPDDAYDLIHCARC-RVHWDAQ-GGKPLLELNRILRPGG 71 (363)
Q Consensus 6 ~D~~~~qvq~A~erg----~p~~~~~~~~~~LPfpd~sFD~v~cs~~-~~~~~~~-~~~~l~E~~RVLrPGG 71 (363)
-|.++.++.+|.++. .++.+.+.+.+.+|+.+++||+|+|+.+ ++|+.++ ...++.++.++|||||
T Consensus 30 vD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 30 VDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 489999999999885 7889999999999999999999999766 6665533 3679999999999998
No 150
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.22 E-value=4.7e-05 Score=69.78 Aligned_cols=120 Identities=17% Similarity=0.137 Sum_probs=77.2
Q ss_pred hhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-ch---HHHHHhc-Cc--eeeeccccccCCCCCCCc
Q 017983 211 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DT---LSIIFDR-GL--IGMYHDWCESFNTYPRTY 283 (363)
Q Consensus 211 ~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~---L~~a~~R-gl--~~~~~d~~e~~lpfp~sF 283 (363)
+..|.+.++ ..++|+|||+|+.+..++..+ -...+++++.. +. ++...+| |. +.++..++-..|+=..+|
T Consensus 27 ls~L~~~~g--~~l~DIGaGtGsi~iE~a~~~-p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 27 LSKLRPRPG--DRLWDIGAGTGSITIEWALAG-PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHhhCCCCC--CEEEEeCCCccHHHHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence 344555554 599999999999998887321 12235566654 33 3333333 32 334444433333311489
Q ss_pred ceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc-CHHHHHHHHHHHHhCCce
Q 017983 284 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWS 340 (363)
Q Consensus 284 DlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~ 340 (363)
|.|+.... . +++.+|.-....|||||.+++.- ..+.....-+..+.+.+.
T Consensus 104 daiFIGGg-~------~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 104 DAIFIGGG-G------NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred CEEEECCC-C------CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 99998866 3 35779999999999999999974 455666666666777773
No 151
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.19 E-value=3.1e-06 Score=78.75 Aligned_cols=72 Identities=28% Similarity=0.418 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHc---CCC--ce-eeecccCCCC-CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALER---GIP--AI-LSVIGTQKLT-FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~er---g~p--~~-~~~~~~~~LP-fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.++.+-.+|..+ ..| .. +.++++++|| .+|+|+|+|+|.+|+-... ++.+.|.|+.|+|||||.+++.-.
T Consensus 105 lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve-~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 105 LDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVE-DPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred eCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccC-CHHHHHHHHHHhcCCCcEEEEEec
Confidence 47778887777654 233 33 5567799999 8999999999988665533 578999999999999999999844
No 152
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.18 E-value=4.5e-06 Score=80.24 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=64.9
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC------c----eeeeccccccCCCC-CCCcceee
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L----IGMYHDWCESFNTY-PRTYDLLH 287 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg------l----~~~~~d~~e~~lpf-p~sFDlVh 287 (363)
+.++||++|||+|+++..++++. .+..++.+|.+ ++++.+.+.- + +.+....+...+.. +++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 35699999999999999888764 12356677777 6777666531 0 11222212222333 38999999
Q ss_pred eccccccccccCC--HHHHHHHHhHhccCCeEEEEE
Q 017983 288 SSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 288 ~~~~l~~~~~~~~--~~~~L~Em~RVLRPGG~lii~ 321 (363)
+..... ...... ...++..+.|+|+|||.+++.
T Consensus 151 ~D~~~~-~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDP-VGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCC-CCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 875422 111111 357889999999999999986
No 153
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.17 E-value=1.7e-06 Score=74.46 Aligned_cols=50 Identities=36% Similarity=0.653 Sum_probs=43.7
Q ss_pred cCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983 30 TQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV 80 (363)
Q Consensus 30 ~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~ 80 (363)
....++++++||+|+|+.+++|.. ++..+|.++.|+|||||+++++.+..
T Consensus 69 ~~~~~~~~~~fD~i~~~~~l~~~~-d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 69 AQDPPFPDGSFDLIICNDVLEHLP-DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp CHTHHCHSSSEEEEEEESSGGGSS-HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhhhhccccchhhHhhHHHHhhcc-cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 445678999999999999988877 47799999999999999999998854
No 154
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.17 E-value=2.7e-06 Score=92.14 Aligned_cols=121 Identities=16% Similarity=0.179 Sum_probs=76.7
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCC-CCCCcceeeecc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNT-YPRTYDLLHSSF 290 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lp-fp~sFDlVh~~~ 290 (363)
.++|||+|||+|+|+.+++..+.. .|+.+|.+ .+++.+.+. |+ +.++...+...+. +.++||+|++.=
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 369999999999999999987643 47788988 778766553 22 1223322222222 247899999851
Q ss_pred -cccc-------ccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeee
Q 017983 291 -LLSD-------VTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI 343 (363)
Q Consensus 291 -~l~~-------~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~ 343 (363)
.|.. +....+...++....|+|+|||.++++.....+....+.+..-.++...
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~ 677 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEE 677 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEE
Confidence 0100 0011134678888999999999998876555444445555555565544
No 155
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.16 E-value=2.2e-06 Score=79.42 Aligned_cols=71 Identities=21% Similarity=0.299 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 7 DEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
|.++.+++.|.++ +.+ +.+...+++.+||++++||+|+++.++++.. +...+|.|+.|+|||||++++..+
T Consensus 77 D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~-~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 77 DFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVP-DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCC-CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 7889999888865 333 4556667888999999999999987765544 456899999999999999998754
No 156
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.16 E-value=1.7e-06 Score=81.66 Aligned_cols=97 Identities=22% Similarity=0.331 Sum_probs=75.4
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc---CceeeeccccccCCCCC-CCcceeeecccccc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR---GLIGMYHDWCESFNTYP-RTYDLLHSSFLLSD 294 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R---gl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~ 294 (363)
....++|+|||.|..+..|...+| -.+.-.|.| .|++-+.+- ++...+-.-.|.+|+|. |+||+|+++..+|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH- 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH- 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh-
Confidence 456899999999999999998874 345667888 888877655 34333322237899999 9999999997776
Q ss_pred ccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 295 VTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 295 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
|.| ++...+..+.-+|||.|.|+-+
T Consensus 149 W~N--dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 149 WTN--DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhc--cCchHHHHHHHhcCCCccchhH
Confidence 443 3567899999999999999875
No 157
>PRK03612 spermidine synthase; Provisional
Probab=98.15 E-value=1.1e-05 Score=84.69 Aligned_cols=120 Identities=15% Similarity=0.152 Sum_probs=76.0
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC---------c----eeeeccccccCCCC-CCCcc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG---------L----IGMYHDWCESFNTY-PRTYD 284 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg---------l----~~~~~d~~e~~lpf-p~sFD 284 (363)
+.++|||+|||+|..+.++.+++. +..++.+|.. ++++.+++.- + +.++...+...+.. +++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 357999999999999999987642 2356777877 7888887721 1 22333323333433 38999
Q ss_pred eeeecccccccccc--CCHHHHHHHHhHhccCCeEEEEEcC-----HHHHHHHHHHHHhCCce
Q 017983 285 LLHSSFLLSDVTQR--CDIADVAVEMDRILRPGGYVLVQDT-----LEMINKLKPVLHSLQWS 340 (363)
Q Consensus 285 lVh~~~~l~~~~~~--~~~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~l~~~l~W~ 340 (363)
+|+++......+.. -.-+++++++.|.|||||.+++... .+....+.+..++....
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLA 438 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCE
Confidence 99998432211110 0124688999999999999998532 33444555555555443
No 158
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.13 E-value=6.2e-06 Score=81.07 Aligned_cols=137 Identities=15% Similarity=0.233 Sum_probs=84.5
Q ss_pred hccccchhHHHHH-HHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc------
Q 017983 194 AFNKDTTHWYALV-SDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL------ 265 (363)
Q Consensus 194 ~F~~~~~~W~~~~-~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl------ 265 (363)
.|-..-.+|.+.+ .+.|. ...+.|||+|||-||=..-.-+.+ +-.++++|.. -.++.|..|.-
T Consensus 97 i~lRnfNNwIKs~LI~~y~-------~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~ 167 (389)
T KOG1975|consen 97 IFLRNFNNWIKSVLINLYT-------KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRF 167 (389)
T ss_pred eehhhhhHHHHHHHHHHHh-------ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhh
Confidence 4445556776644 12233 235689999999998432222222 2346677776 45666655531
Q ss_pred ------eeeeccccc-----cCCCCC-CCcceeeecccccc-ccccCCHHHHHHHHhHhccCCeEEEEEc--CHHHHHHH
Q 017983 266 ------IGMYHDWCE-----SFNTYP-RTYDLLHSSFLLSD-VTQRCDIADVAVEMDRILRPGGYVLVQD--TLEMINKL 330 (363)
Q Consensus 266 ------~~~~~d~~e-----~~lpfp-~sFDlVh~~~~l~~-~~~~~~~~~~L~Em~RVLRPGG~lii~D--~~~~~~~i 330 (363)
.-.+...|. ..++++ ..||+|-|-++||+ +..-.....+|.-+.+.|||||++|-+- ...++.++
T Consensus 168 ~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rl 247 (389)
T KOG1975|consen 168 KKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRL 247 (389)
T ss_pred hcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHH
Confidence 112222342 246777 55999999999986 3333345668999999999999999874 44466777
Q ss_pred HHHHHhCCce
Q 017983 331 KPVLHSLQWS 340 (363)
Q Consensus 331 ~~l~~~l~W~ 340 (363)
+.. ...+|-
T Consensus 248 r~~-e~~~~g 256 (389)
T KOG1975|consen 248 RAG-EVERFG 256 (389)
T ss_pred Hhc-cchhhc
Confidence 665 444553
No 159
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.12 E-value=3.9e-06 Score=78.22 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=59.2
Q ss_pred hhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC--
Q 017983 210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-- 280 (363)
Q Consensus 210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-- 280 (363)
.++.|.++++ .+|||+|||+|.+++.|+........|+.++.. ...+.|.++ |+ +.+.+..+. ..++
T Consensus 64 ~l~~L~l~pg--~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~--~g~~~~ 139 (209)
T PF01135_consen 64 MLEALDLKPG--DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS--EGWPEE 139 (209)
T ss_dssp HHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG--GTTGGG
T ss_pred HHHHHhcCCC--CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh--hccccC
Confidence 3445556665 599999999999998887631111124455555 455555444 32 333433232 4455
Q ss_pred CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 281 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 281 ~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
..||.|++.......+ .++.+-||+||.+++--
T Consensus 140 apfD~I~v~~a~~~ip---------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIP---------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp -SEEEEEESSBBSS-----------HHHHHTEEEEEEEEEEE
T ss_pred CCcCEEEEeeccchHH---------HHHHHhcCCCcEEEEEE
Confidence 7899999998776433 34566699999999853
No 160
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.12 E-value=8.2e-06 Score=78.25 Aligned_cols=92 Identities=16% Similarity=0.283 Sum_probs=70.6
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCce-eeeccccccCCCCCCCcceeeeccccccccc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-GMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ 297 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~-~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~ 297 (363)
...++||+|+|-|+....|+..- -.|...+.| .|...-.+||.. -...+|-+. +..||+|.|-++|-...
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvLDRc~- 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVLDRCD- 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhhhccC-
Confidence 45789999999999999997642 246777888 788888889972 222334211 26799999999887533
Q ss_pred cCCHHHHHHHHhHhccCCeEEEEE
Q 017983 298 RCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 298 ~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
.+..+|.+|++.|+|+|.+++.
T Consensus 166 --~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 166 --RPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred --CHHHHHHHHHHHhCCCCEEEEE
Confidence 4678999999999999999996
No 161
>PHA03411 putative methyltransferase; Provisional
Probab=98.11 E-value=8.9e-06 Score=78.88 Aligned_cols=97 Identities=11% Similarity=0.125 Sum_probs=66.8
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCC-C-CCcceeeecccccccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTY-P-RTYDLLHSSFLLSDVT 296 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpf-p-~sFDlVh~~~~l~~~~ 296 (363)
..+|||+|||+|.++..++.+.. ...|+++|.+ .|++.+.++-. +..+... ...+ . ++||+|+++--|.|..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D---~~e~~~~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSD---VFEFESNEKFDVVISNPPFGKIN 140 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECc---hhhhcccCCCcEEEEcCCccccC
Confidence 35899999999999888876421 1257888888 89988877521 2222221 2223 2 7899999987777643
Q ss_pred cc--CC---------------HHHHHHHHhHhccCCeEEEEE
Q 017983 297 QR--CD---------------IADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 297 ~~--~~---------------~~~~L~Em~RVLRPGG~lii~ 321 (363)
.. .+ +.+.+....++|+|+|.+++.
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 21 01 357788999999999987775
No 162
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.09 E-value=1.9e-06 Score=83.25 Aligned_cols=94 Identities=21% Similarity=0.193 Sum_probs=70.6
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCce-eeeccccccCCCCC-CCcceeeeccccccccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-GMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ 297 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~-~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~ 297 (363)
...+||+|||.|-+. ...+. ..+.+.|.+ ..+..+...|-. -.+.| +. .+||+ .+||.++...++||+..
T Consensus 46 gsv~~d~gCGngky~---~~~p~--~~~ig~D~c~~l~~~ak~~~~~~~~~ad-~l-~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYL---GVNPL--CLIIGCDLCTGLLGGAKRSGGDNVCRAD-AL-KLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred cceeeecccCCcccC---cCCCc--ceeeecchhhhhccccccCCCceeehhh-hh-cCCCCCCccccchhhhhhhhhhh
Confidence 458999999999642 22221 125677777 566777777652 33333 33 58999 99999999999999998
Q ss_pred cCCHHHHHHHHhHhccCCeEEEEE
Q 017983 298 RCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 298 ~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
.+.-+.+|+|+.|+|||||...|-
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEE
Confidence 888899999999999999996653
No 163
>PLN02366 spermidine synthase
Probab=98.09 E-value=8.6e-06 Score=80.18 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=63.8
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc------Cc----eeeeccccccCC-CCC-CCccee
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR------GL----IGMYHDWCESFN-TYP-RTYDLL 286 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R------gl----~~~~~d~~e~~l-pfp-~sFDlV 286 (363)
+.++|||+|||.|+++.++++++ .+..|+.++.. .+++.+++. ++ +.++...+...+ ..+ +.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 35799999999999999999874 23345555655 567766553 11 223322222122 134 789999
Q ss_pred eecccccccccc-CCHHHHHHHHhHhccCCeEEEEE
Q 017983 287 HSSFLLSDVTQR-CDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 287 h~~~~l~~~~~~-~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
++...-.+-+.. -.-..++..+.|.|+|||.+++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 986433221110 01246899999999999999874
No 164
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.08 E-value=1.9e-05 Score=73.36 Aligned_cols=129 Identities=16% Similarity=0.228 Sum_probs=85.0
Q ss_pred eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chH---H-HHHhcCce----eeeccccccCC------CCC-CCccee
Q 017983 223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTL---S-IIFDRGLI----GMYHDWCESFN------TYP-RTYDLL 286 (363)
Q Consensus 223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L---~-~a~~Rgl~----~~~~d~~e~~l------pfp-~sFDlV 286 (363)
+||.||||||--+++++..-- -+.--|+|.. +.+ . .+.+.|+. ...-|-+...- ++. ++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 699999999987777776311 1235788776 332 2 23344431 11222211111 123 799999
Q ss_pred eeccccccccccCCHHHHHHHHhHhccCCeEEEEE-----------cC----------------HHHHHHHHHHHHhCCc
Q 017983 287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ-----------DT----------------LEMINKLKPVLHSLQW 339 (363)
Q Consensus 287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~-----------D~----------------~~~~~~i~~l~~~l~W 339 (363)
+|..++|-.+ ....+.++.+..|+|+|||.|++= ++ ..-++.+.++|.+-..
T Consensus 107 ~~~N~lHI~p-~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCINMLHISP-WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehhHHHhcC-HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 9999988544 334578999999999999999983 11 1246778999987777
Q ss_pred eeeee-----cceEEEEEe
Q 017983 340 STNIY-----HDQFLVGKK 353 (363)
Q Consensus 340 ~~~~~-----~~~~li~~K 353 (363)
+.... .+++|||+|
T Consensus 186 ~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 186 ELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred ccCcccccCCCCeEEEEeC
Confidence 65333 789999997
No 165
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.06 E-value=8.3e-06 Score=79.58 Aligned_cols=124 Identities=17% Similarity=0.180 Sum_probs=81.7
Q ss_pred hhhccccchhHHHHHHHhhhhccccCCCCCceEEEecccccH----HHHHhhcC-C--CeEEEEeecCCc-chHHHHHhc
Q 017983 192 EEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGG----FAAALIDQ-P--LWVMNVVPIDAP-DTLSIIFDR 263 (363)
Q Consensus 192 ~e~F~~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~----faa~L~~~-~--v~v~~v~~~d~s-~~L~~a~~R 263 (363)
.-.|=.+...|...... +.. . +..-+|+..||.+|. +|..|.+. + ..-..|.++|.+ +.|+.|.+-
T Consensus 93 eT~FFRd~~~f~~L~~~--~~~---~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 93 LTAFFREAHHFPILAEH--ARR---R-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred CCCccCCcHHHHHHHHH--HHh---c-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 34566777777665432 211 1 123589999999994 55555542 1 112468999998 788766432
Q ss_pred ---------------------------Cc-----------eeeeccccccCCCCC--CCcceeeeccccccccccCCHHH
Q 017983 264 ---------------------------GL-----------IGMYHDWCESFNTYP--RTYDLLHSSFLLSDVTQRCDIAD 303 (363)
Q Consensus 264 ---------------------------gl-----------~~~~~d~~e~~lpfp--~sFDlVh~~~~l~~~~~~~~~~~ 303 (363)
|. ....|+..+ .+|| +.||+|+|.++|.|+.. .....
T Consensus 167 ~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~--~~~~~~~~fD~I~cRNvliyF~~-~~~~~ 243 (287)
T PRK10611 167 IYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLA--KQWAVPGPFDAIFCRNVMIYFDK-TTQER 243 (287)
T ss_pred CCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCC--CCCccCCCcceeeHhhHHhcCCH-HHHHH
Confidence 10 012233322 2454 89999999999999854 45688
Q ss_pred HHHHHhHhccCCeEEEEEcCH
Q 017983 304 VAVEMDRILRPGGYVLVQDTL 324 (363)
Q Consensus 304 ~L~Em~RVLRPGG~lii~D~~ 324 (363)
++..+.+.|+|||++++....
T Consensus 244 vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 244 ILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred HHHHHHHHhCCCcEEEEeCcc
Confidence 999999999999999987653
No 166
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.06 E-value=2.5e-06 Score=80.86 Aligned_cols=72 Identities=22% Similarity=0.178 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHc----CCC--ceeeecccCCC-CCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALER----GIP--AILSVIGTQKL-TFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~L-Pfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.++.+++.|+++ |+. +.+...+++.+ ++++++||+|+|+.+++|+. ++..+|.++.|+|||||++++...
T Consensus 72 vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~-~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 72 CDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVA-DPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred EECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhC-CHHHHHHHHHHHcCCCeEEEEEEE
Confidence 48899999999876 432 34555666666 58889999999998886654 467899999999999999998754
No 167
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.04 E-value=1.3e-05 Score=75.00 Aligned_cols=121 Identities=16% Similarity=0.254 Sum_probs=75.0
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHh-----cCcee-eeccccccCCCCCCCcceeeecccc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD-----RGLIG-MYHDWCESFNTYPRTYDLLHSSFLL 292 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~-----Rgl~~-~~~d~~e~~lpfp~sFDlVh~~~~l 292 (363)
...++||.|||.|..+..|+-.-... |.-++.. +.++.|.+ .+-++ .+...-+.+-|-++.||+|.+-+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~--VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDE--VDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SE--EEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCE--eEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 46789999999999998776543332 3334444 67887773 22222 2322223344445899999999999
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEEcCHH----------------HHHHHHHHHHhCCceeee
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE----------------MINKLKPVLHSLQWSTNI 343 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~----------------~~~~i~~l~~~l~W~~~~ 343 (363)
.|+++. ++..+|.-...-|||+|.++|-|... ....+++|.+.-..++..
T Consensus 133 ghLTD~-dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 133 GHLTDE-DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp GGS-HH-HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEE
T ss_pred ccCCHH-HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEE
Confidence 999875 68899999999999999999975321 235566666665555544
No 168
>PRK06922 hypothetical protein; Provisional
Probab=98.04 E-value=3.3e-06 Score=90.14 Aligned_cols=73 Identities=21% Similarity=0.150 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHc----CCCceeeecccCCCC--CCCCCccEEEeCCccccccc------------CCCchhhhhcccc
Q 017983 6 KDEHEAQIQFALER----GIPAILSVIGTQKLT--FPDDAYDLIHCARCRVHWDA------------QGGKPLLELNRIL 67 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LP--fpd~sFD~v~cs~~~~~~~~------------~~~~~l~E~~RVL 67 (363)
-|.|+.+++.|.++ +....+...++..+| |++++||+|+++.++++|.+ +...+|+++.|+|
T Consensus 448 IDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVL 527 (677)
T PRK06922 448 IDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVL 527 (677)
T ss_pred EECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHc
Confidence 48999999999876 344555667777888 99999999999988877632 2357899999999
Q ss_pred cCCeEEEEEeC
Q 017983 68 RPGGFFIWSAT 78 (363)
Q Consensus 68 rPGG~~~~s~~ 78 (363)
||||++++...
T Consensus 528 KPGGrLII~D~ 538 (677)
T PRK06922 528 KPGGRIIIRDG 538 (677)
T ss_pred CCCcEEEEEeC
Confidence 99999999865
No 169
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=1.9e-05 Score=77.25 Aligned_cols=108 Identities=18% Similarity=0.286 Sum_probs=68.0
Q ss_pred eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cce--eeeccccccCCCCCCCcceeeeccccccc
Q 017983 223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI--GMYHDWCESFNTYPRTYDLLHSSFLLSDV 295 (363)
Q Consensus 223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl~--~~~~d~~e~~lpfp~sFDlVh~~~~l~~~ 295 (363)
+|||+|||+|-+++.|++..- ...++-+|.+ ..++.+++- ++. .++++. -..+-.+.||+|+|+==||.=
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~--~~~~v~~kfd~IisNPPfh~G 237 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASN--LYEPVEGKFDLIISNPPFHAG 237 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEec--ccccccccccEEEeCCCccCC
Confidence 999999999999999998653 2346667777 455544332 222 234331 123333799999999666521
Q ss_pred ccc--CCHHHHHHHHhHhccCCeEEEEEcC--HHHHHHHHHH
Q 017983 296 TQR--CDIADVAVEMDRILRPGGYVLVQDT--LEMINKLKPV 333 (363)
Q Consensus 296 ~~~--~~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~l 333 (363)
..- .-...++.+-.+.|++||.+.|--. ..+-..++++
T Consensus 238 ~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~ 279 (300)
T COG2813 238 KAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKEL 279 (300)
T ss_pred cchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHh
Confidence 111 0123688999999999999887643 2234444443
No 170
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.02 E-value=2.2e-05 Score=74.11 Aligned_cols=95 Identities=11% Similarity=0.022 Sum_probs=69.4
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc-----------------Cc-eee-eccccccCCCC-
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR-----------------GL-IGM-YHDWCESFNTY- 279 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R-----------------gl-~~~-~~d~~e~~lpf- 279 (363)
..+||+.|||.|.=+.+|+++|.. |+++|.| ..++.++++ |. +.+ ..|..+ ++.
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~--l~~~ 118 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN--LPKI 118 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC--CCcc
Confidence 359999999999999999998764 6777888 556655442 11 222 233221 221
Q ss_pred --C-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 280 --P-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 280 --p-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
. +.||+|.=..+|.+++. ....++..-|.++|||||.+++.
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred ccccCCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEEE
Confidence 1 57999999999999963 45688999999999999998775
No 171
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.02 E-value=2e-05 Score=70.23 Aligned_cols=95 Identities=11% Similarity=0.084 Sum_probs=61.1
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceeeeccccccCCCCC-CCcceeeecccccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYP-RTYDLLHSSFLLSD 294 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~ 294 (363)
..+|||+|||+|.++..|++++. .++++|.+ .+++.+.++. -+.+++..+. .++++ ..||.|+++--++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~-~~~~~~~~~d~vi~n~Py~- 88 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDAL-KFDLPKLQPYKVVGNLPYN- 88 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchh-cCCccccCCCEEEECCCcc-
Confidence 35899999999999999998743 46777877 7887776652 1334443333 35667 6799998874433
Q ss_pred ccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 295 VTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 295 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
.. ...+..++.+. -+.++|.+++...
T Consensus 89 ~~-~~~i~~~l~~~--~~~~~~~l~~q~e 114 (169)
T smart00650 89 IS-TPILFKLLEEP--PAFRDAVLMVQKE 114 (169)
T ss_pred cH-HHHHHHHHhcC--CCcceEEEEEEHH
Confidence 21 12233343332 2568898888743
No 172
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.99 E-value=1.4e-05 Score=74.90 Aligned_cols=72 Identities=11% Similarity=0.119 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHc----C--CCceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALER----G--IPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g--~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.|+.++..|+++ + ..+.+...+...+|+++ ||+|+|+.+++|+++ +...+|.++.|+|||||.|+++.+
T Consensus 85 vD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 85 IDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN--ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred EeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC--CCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 48899999999876 2 24567777888888874 899999988877653 236799999999999999999976
Q ss_pred C
Q 017983 79 P 79 (363)
Q Consensus 79 ~ 79 (363)
.
T Consensus 163 ~ 163 (239)
T TIGR00740 163 F 163 (239)
T ss_pred c
Confidence 3
No 173
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.98 E-value=4.2e-05 Score=70.06 Aligned_cols=102 Identities=17% Similarity=0.137 Sum_probs=75.2
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV 80 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~ 80 (363)
-|.++.+++.|+++ |++ +.+...+++.+++ +++||+|+|.. . .+...++.++.|+|||||+|++...+.
T Consensus 75 iD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-~----~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 75 VDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-V----ASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred EeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc-c----cCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 37888888877654 554 5666667777877 78999999863 1 123469999999999999999996642
Q ss_pred CCCChhhHHHHHHHHHHHhhcceEEEEEecC-CCc----eeEEEEec
Q 017983 81 YRHDDRHRSVWNAMVNLTESMCWKAVARSVD-SNR----IGFVIYQK 122 (363)
Q Consensus 81 ~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~-~~~----~~~~i~~k 122 (363)
+ ...++++++...|.+...+.- .+| -|+.|-+|
T Consensus 149 ~---------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 149 P---------EEEIAELPKALGGKVEEVIELTLPGLDGERHLVIIRK 186 (187)
T ss_pred h---------HHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEec
Confidence 2 456889999999998776542 222 47788776
No 174
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.98 E-value=7.2e-06 Score=82.45 Aligned_cols=94 Identities=20% Similarity=0.236 Sum_probs=65.2
Q ss_pred eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCCCC-CCcceeeecccc
Q 017983 223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNTYP-RTYDLLHSSFLL 292 (363)
Q Consensus 223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lpfp-~sFDlVh~~~~l 292 (363)
.++|+|||+|+...+++.... -++++.+.+ ..+..+.+. ++ .-++++ + ...||+ ++||.+-+..+.
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~-~-~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVAD-F-GKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred cccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhh-h-hcCCCCccccCcEEEEeec
Confidence 899999999998888875321 123444444 222222111 11 113333 3 257999 999999999999
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
.|.++ .+.++.|++|||+|||+++.-+.
T Consensus 189 ~~~~~---~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 189 CHAPD---LEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred ccCCc---HHHHHHHHhcccCCCceEEeHHH
Confidence 98874 57899999999999999998653
No 175
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.98 E-value=2e-05 Score=70.66 Aligned_cols=141 Identities=18% Similarity=0.199 Sum_probs=67.6
Q ss_pred ccc-cCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHH---HHhcCceee--eccccccCCCCC-CCcce
Q 017983 213 GLA-INWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSI---IFDRGLIGM--YHDWCESFNTYP-RTYDL 285 (363)
Q Consensus 213 ~l~-i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~---a~~Rgl~~~--~~d~~e~~lpfp-~sFDl 285 (363)
.+. +..+...+|||+||++|+|+..+.++......|+++|...+-.. -.-+|-+.. ..+.-...++=. ..||+
T Consensus 15 ~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dl 94 (181)
T PF01728_consen 15 KFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDL 94 (181)
T ss_dssp TTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESE
T ss_pred HCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcce
Confidence 344 45556689999999999999999988622334555554422000 000111100 000000111112 68999
Q ss_pred eeecccccc--------ccccCCHHHHHHHHhHhccCCeEEEEE-----cCHHHHHHHHHHHHhCCceeeee-----cce
Q 017983 286 LHSSFLLSD--------VTQRCDIADVAVEMDRILRPGGYVLVQ-----DTLEMINKLKPVLHSLQWSTNIY-----HDQ 347 (363)
Q Consensus 286 Vh~~~~l~~--------~~~~~~~~~~L~Em~RVLRPGG~lii~-----D~~~~~~~i~~l~~~l~W~~~~~-----~~~ 347 (363)
|+|..+..- ..........|.=+.+.|||||.+++- +..+.+..++..-+..++-.-.. .|.
T Consensus 95 v~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~~s~E~ 174 (181)
T PF01728_consen 95 VLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRSESSEE 174 (181)
T ss_dssp EEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBTTCBEE
T ss_pred eccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCCCccEE
Confidence 999873321 111111234445555789999988874 22345555555444433321111 566
Q ss_pred EEEEEe
Q 017983 348 FLVGKK 353 (363)
Q Consensus 348 ~li~~K 353 (363)
.+||++
T Consensus 175 Ylv~~~ 180 (181)
T PF01728_consen 175 YLVCRG 180 (181)
T ss_dssp EEESEE
T ss_pred EEEEcC
Confidence 666653
No 176
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.95 E-value=1.3e-05 Score=69.73 Aligned_cols=71 Identities=27% Similarity=0.431 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeecccCCCC--CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGTQKLT--FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LP--fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.++.+|+.|.++ +++ +.+.+.+...++ |+ +.||+|+++..+++.. +...+|.++.|+|+|||.++++.+
T Consensus 34 vD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l~~~~-~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 34 VDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVLHHFP-DPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp EESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTGGGTS-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCchhhcc-CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 38899999999984 776 777778887788 88 9999999998775555 456799999999999999999977
No 177
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.94 E-value=7.9e-05 Score=76.55 Aligned_cols=110 Identities=19% Similarity=0.299 Sum_probs=71.1
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeecccccc---CCCCC-CCcceeeec
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCES---FNTYP-RTYDLLHSS 289 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~---~lpfp-~sFDlVh~~ 289 (363)
..+|||+|||+|.++..|+.... .|+++|.+ +|++.|.+. |+ +..+....+. .++++ ++||+|++.
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 35899999999999999998753 47788988 788877654 32 2222221221 24466 789999875
Q ss_pred cccccccccCCHHHHHHHHhHhccCCeEEEEEcC-HHHHHHHHHHHHhCCcee
Q 017983 290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWST 341 (363)
Q Consensus 290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~ 341 (363)
+.+.++...+..+.+ |+|++.++++=. ...-..++.|.+. .|++
T Consensus 375 ------PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~~-gY~l 419 (443)
T PRK13168 375 ------PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVEA-GYRL 419 (443)
T ss_pred ------cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhhC-CcEE
Confidence 122334556666666 699999999844 4444556665432 3543
No 178
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.94 E-value=1.1e-05 Score=79.82 Aligned_cols=70 Identities=20% Similarity=0.199 Sum_probs=54.7
Q ss_pred CCCHHHHHHHH--Hc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 7 DEHEAQIQFAL--ER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 7 D~~~~qvq~A~--er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
|.|+.++..+. ++ ...+.+...+.+.+|+ +++||+|+|..+++|.. ++..+|.++.|+|||||.|+++..
T Consensus 152 D~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~-dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 152 DPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRR-SPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred cCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhccC-CHHHHHHHHHHhcCCCcEEEEEEE
Confidence 67777765432 22 2246667778899999 89999999998887765 467899999999999999999854
No 179
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.93 E-value=1.7e-05 Score=75.10 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHc----CC--CceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALER----GI--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.|+.+++.|+++ |. .+.+...++..+|+++ ||+|+|+.++++..++ ...++.++.|+|||||.|+++..
T Consensus 88 vD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 88 IDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN--ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred EeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC--CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 48899999999887 33 3566666778888864 8999999888776542 25799999999999999999864
No 180
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.93 E-value=8.7e-06 Score=75.07 Aligned_cols=71 Identities=23% Similarity=0.312 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.|+.|++.|.++ |+. +.+...+....|++ ++||+|++..+++|+.+ ...++.++.|+|||||+++++.+
T Consensus 29 id~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 29 YTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHIKD-KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred EECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhCCC-HHHHHHHHHHHcCCCCEEEEEEc
Confidence 47899999999876 333 35556666666887 48999999888877754 56899999999999999999865
No 181
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.90 E-value=3.9e-05 Score=70.31 Aligned_cols=112 Identities=14% Similarity=0.217 Sum_probs=69.6
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHH----HHHhcCc---eeeeccccccCCCCC-CCcceeeecccc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLS----IIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLL 292 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~----~a~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l 292 (363)
.+|||+|||.|.+...|++.+... .++++|-+ ..++ +|..+|+ |...+..-.. -.|- ..||+|+=-..+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~-~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD-PDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccC-CcccccceeEEeecCce
Confidence 399999999999999999987542 37788887 5443 4445555 2222211111 1244 788888754333
Q ss_pred ccc---c--ccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHH
Q 017983 293 SDV---T--QRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLH 335 (363)
Q Consensus 293 ~~~---~--~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~ 335 (363)
-.+ + ....+..++--+.++|+|||.|+|+--+-..+++.+...
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~ 194 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFE 194 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHh
Confidence 211 1 112234578889999999999999865544444444443
No 182
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.89 E-value=1.2e-05 Score=73.62 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEE
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s 76 (363)
-|.|+.+++.|+++ ++. +.+.+.+...++++ ++||+|+|+.+++++.. +...++.++.|+|||||++++.
T Consensus 58 vD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 58 WDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred EeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 38899999887654 554 45556677777885 67999999988765543 2468999999999999996553
No 183
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.88 E-value=1.2e-05 Score=73.60 Aligned_cols=70 Identities=19% Similarity=0.297 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEE
Q 017983 6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s 76 (363)
-|.|+.+++.|+++ |+++...+.+...++++ ++||+|+|+.++++.+. +...++.++.|+|||||++++.
T Consensus 58 iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 58 WDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 48889999877544 67666666666667775 68999999988877653 2357999999999999996554
No 184
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.87 E-value=6e-06 Score=78.27 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983 6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP 79 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~ 79 (363)
-|.+|..|+.|..+ |+.+......++.|-...++||+|+|..+++|.++ +..+++++.+.+||||.+++|+.-
T Consensus 87 iD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~d-p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 87 IDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPD-PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred ecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCC-HHHHHHHHHHHcCCCcEEEEeccc
Confidence 48888888888744 66655666668888888899999999999999875 778999999999999999999873
No 185
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.87 E-value=1.5e-05 Score=78.62 Aligned_cols=71 Identities=18% Similarity=0.116 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHH--c--C--CCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALE--R--G--IPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~e--r--g--~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.|+.++.++.. + + ..+.+...+.+.+|+. ++||+|+|+.+++|+. ++..+|.|+.|+|||||.|+++..
T Consensus 150 iDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~~-dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 150 IDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYHRK-SPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred EcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhccC-CHHHHHHHHHHhcCCCCEEEEEEE
Confidence 3677777654321 1 1 2345566778889876 5899999999998876 466899999999999999999854
No 186
>PHA03412 putative methyltransferase; Provisional
Probab=97.86 E-value=4.4e-05 Score=72.60 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=59.8
Q ss_pred ceEEEecccccHHHHHhhcCC--CeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCCCCcceeeecccccccc-
Q 017983 222 RNVMDMNASYGGFAAALIDQP--LWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYPRTYDLLHSSFLLSDVT- 296 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~--v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~- 296 (363)
.+|||+|||+|.++..++.+- ....+|+++|.. .++..|.+... +..++.... ..++..+||+|+++==+.-..
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~-~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADAL-TTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchh-cccccCCccEEEECCCCCCccc
Confidence 599999999999999887631 012368888888 78888875532 222221111 122347999999872222111
Q ss_pred -c-------cCCHHHHHHHHhHhccCCeEEEE
Q 017983 297 -Q-------RCDIADVAVEMDRILRPGGYVLV 320 (363)
Q Consensus 297 -~-------~~~~~~~L~Em~RVLRPGG~lii 320 (363)
+ ..-...++....|.|+||+. |+
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 1 01135588888898888886 44
No 187
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.86 E-value=5.1e-05 Score=71.89 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=80.2
Q ss_pred CCCceEEEecccccHHHHHhhcCCC-eEEEEeecCCcchHHHH----HhcCc----eeeeccccccCC-CCC-CCcceee
Q 017983 219 SSVRNVMDMNASYGGFAAALIDQPL-WVMNVVPIDAPDTLSII----FDRGL----IGMYHDWCESFN-TYP-RTYDLLH 287 (363)
Q Consensus 219 ~~~r~VLDvGCG~G~faa~L~~~~v-~v~~v~~~d~s~~L~~a----~~Rgl----~~~~~d~~e~~l-pfp-~sFDlVh 287 (363)
....+|||.+.|.|.+|+.-+++++ .++.|. .|. +-|+.| ..|++ +.+++..|.+.. .|+ .|||+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvE-kdp-~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVE-KDP-NVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEe-eCC-CeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 3456999999999999999988886 443331 111 122211 12222 334443343333 488 8999886
Q ss_pred ec-cccccccccCCHHHHHHHHhHhccCCeEEEEEc--------CHHHHHHHHHHHHhCCceeeee-cceE-EEEEec
Q 017983 288 SS-FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD--------TLEMINKLKPVLHSLQWSTNIY-HDQF-LVGKKG 354 (363)
Q Consensus 288 ~~-~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D--------~~~~~~~i~~l~~~l~W~~~~~-~~~~-li~~K~ 354 (363)
-. ==|++-... --+.+-.|++|||||||.++=-. ..+....+.+.+.+..+.+... .+.. ++++|+
T Consensus 211 HDPPRfS~AgeL-YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~gv~A~k~ 287 (287)
T COG2521 211 HDPPRFSLAGEL-YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREALGVVAVKP 287 (287)
T ss_pred eCCCccchhhhH-hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhccceEEecC
Confidence 42 112221111 13678999999999999987532 2346678888888888874333 4444 566664
No 188
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.83 E-value=5.4e-05 Score=71.56 Aligned_cols=112 Identities=20% Similarity=0.250 Sum_probs=72.5
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-----chHHHHHhcCc--eeeeccccccCCCC--C-CCcceeeeccc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-----DTLSIIFDRGL--IGMYHDWCESFNTY--P-RTYDLLHSSFL 291 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-----~~L~~a~~Rgl--~~~~~d~~e~~lpf--p-~sFDlVh~~~~ 291 (363)
..+|+||||.|.|...+|.+.-.. ++.+++.. ..+..+.+.|+ +.++...+...+.+ + +|.|-|+..+-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~-nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEK-NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCC-CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 489999999999999999864322 34444433 45667777777 44454445444543 4 59999987633
Q ss_pred cc-----cccccCCHHHHHHHHhHhccCCeEEEEEcCHH-HHHH-HHHHH
Q 017983 292 LS-----DVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-MINK-LKPVL 334 (363)
Q Consensus 292 l~-----~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~-i~~l~ 334 (363)
=. |...+---...|.++.|+|+|||.+.+..+.+ ..+. +....
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~ 178 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVL 178 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHH
Confidence 11 21111112579999999999999999975544 4444 44444
No 189
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.82 E-value=8.4e-06 Score=77.30 Aligned_cols=90 Identities=19% Similarity=0.278 Sum_probs=60.1
Q ss_pred cCCCCHHHHHHHHHcCCCceee-----ecccCCCCCC--CCCccEEEeCCcccccccCCCchhhhhcccccCCe-EEEEE
Q 017983 5 PKDEHEAQIQFALERGIPAILS-----VIGTQKLTFP--DDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGG-FFIWS 76 (363)
Q Consensus 5 p~D~~~~qvq~A~erg~p~~~~-----~~~~~~LPfp--d~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG-~~~~s 76 (363)
--|+|++|++.|.+. -|+.-. ..+.+-.++- ++|.|+|+|+.|. ||.+ ...++.++.||||+.| .+++=
T Consensus 60 atD~s~~mL~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~-HWFd-le~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 60 ATDVSEAMLKVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV-HWFD-LERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred eecCCHHHHHHhhcC-CCcccccCCccccccccccccCCCcceeeehhhhhH-Hhhc-hHHHHHHHHHHcCCCCCEEEEE
Confidence 459999999999655 222222 1223334554 9999999999887 8986 5589999999999866 55543
Q ss_pred eCC-CCCCChhhHHHHHHHHHHHhhcceE
Q 017983 77 ATP-VYRHDDRHRSVWNAMVNLTESMCWK 104 (363)
Q Consensus 77 ~~~-~~~~~~e~~~~~~~~~~l~~~~cw~ 104 (363)
..- ..-. |-+...+..++||+
T Consensus 137 ~Y~dd~v~-------~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 137 NYNDDFVD-------WPEFDSVMLRLYDS 158 (261)
T ss_pred EccCCCcC-------CHHHHHHHHHHhhc
Confidence 321 1112 34456677777776
No 190
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.81 E-value=0.00018 Score=66.06 Aligned_cols=72 Identities=24% Similarity=0.271 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHcC------CCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALERG------IPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~erg------~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.++.+++.|.++- .++.+...+...+++++++||+|+++.+++++.+ ...+|.++.++|+|||++++...
T Consensus 82 ~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~-~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 82 LDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPD-IDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred EeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCC-HHHHHHHHHHhccCCcEEEEEEe
Confidence 477888998888762 2356666778888999999999999988877654 56899999999999999988643
No 191
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.80 E-value=9.4e-05 Score=75.54 Aligned_cols=111 Identities=19% Similarity=0.200 Sum_probs=70.1
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCC---CCC-CCcceeeec
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFN---TYP-RTYDLLHSS 289 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~l---pfp-~sFDlVh~~ 289 (363)
..+|||+|||+|.++..|++... .|+++|.+ ++++.|.+. |+ +.++...++..+ ++. ++||+|++.
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 35899999999999999987643 46777877 777766553 32 233333333222 344 689999864
Q ss_pred cccccccccCC-HHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCcee
Q 017983 290 FLLSDVTQRCD-IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWST 341 (363)
Q Consensus 290 ~~l~~~~~~~~-~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~ 341 (363)
-- +.+ ...++.++.+ |+|+|.++++-....+.+-.+++..-.|+.
T Consensus 370 PP------r~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~ 415 (431)
T TIGR00479 370 PP------RKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGI 415 (431)
T ss_pred cC------CCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeE
Confidence 21 112 2456777665 899999999866665544333343444544
No 192
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.80 E-value=7e-05 Score=76.20 Aligned_cols=120 Identities=17% Similarity=0.194 Sum_probs=69.5
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCC-C--C-CCcceee
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNT-Y--P-RTYDLLH 287 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lp-f--p-~sFDlVh 287 (363)
..+|||+|||+|+|+.+.+..+.. .|+.+|.+ .+++.+.+. |+ +.++...+...+. + . ++||+|+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~--~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCS--QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 368999999999998776554432 46777887 677665442 22 1223222222221 2 2 5899999
Q ss_pred ecccc-cc----c-cccCCHHHHHHHHhHhccCCeEEEEEcC------HHHHHHHHHHHHhCCceee
Q 017983 288 SSFLL-SD----V-TQRCDIADVAVEMDRILRPGGYVLVQDT------LEMINKLKPVLHSLQWSTN 342 (363)
Q Consensus 288 ~~~~l-~~----~-~~~~~~~~~L~Em~RVLRPGG~lii~D~------~~~~~~i~~l~~~l~W~~~ 342 (363)
+.==. .. + ....+..+++.-..++|+|||.++...- .++.+.+.+-+..-.-+.+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~ 365 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQ 365 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 87111 10 0 0001345566678899999999998532 2345555555554444433
No 193
>PLN02476 O-methyltransferase
Probab=97.74 E-value=0.00018 Score=69.95 Aligned_cols=126 Identities=12% Similarity=0.163 Sum_probs=76.5
Q ss_pred CCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHH----HhcCc---eeeeccccccCCC-C-----CCC
Q 017983 220 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSII----FDRGL---IGMYHDWCESFNT-Y-----PRT 282 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a----~~Rgl---~~~~~d~~e~~lp-f-----p~s 282 (363)
+.++||++|+|+|..+.+|+.. +.. |+.++.. +.+++| .+-|+ +.+....+...|+ + .++
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~---V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGC---LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 3579999999999998888752 222 4455554 444444 23344 2333222222232 1 268
Q ss_pred cceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC------------HHHHHHHHH----HHHhCCceeeee--
Q 017983 283 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT------------LEMINKLKP----VLHSLQWSTNIY-- 344 (363)
Q Consensus 283 FDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~------------~~~~~~i~~----l~~~l~W~~~~~-- 344 (363)
||+|+... ++.+...++....+.|||||.+++-+. ......|++ +...=++...+.
T Consensus 195 FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi 268 (278)
T PLN02476 195 YDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI 268 (278)
T ss_pred CCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe
Confidence 99999762 234567789999999999999887532 011123333 444555665554
Q ss_pred cceEEEEEec
Q 017983 345 HDQFLVGKKG 354 (363)
Q Consensus 345 ~~~~li~~K~ 354 (363)
.+.+++++|+
T Consensus 269 gDGl~i~~K~ 278 (278)
T PLN02476 269 GDGMTICRKR 278 (278)
T ss_pred CCeeEEEEEC
Confidence 6788888875
No 194
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.73 E-value=0.00029 Score=64.58 Aligned_cols=132 Identities=17% Similarity=0.279 Sum_probs=73.8
Q ss_pred cchhHHHHHHHhhhhccccCCCCCceEEEeccccc--HHHHHhhcCCCeEEEEeecCCc----chHHHH-HhcCc--eee
Q 017983 198 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYG--GFAAALIDQPLWVMNVVPIDAP----DTLSII-FDRGL--IGM 268 (363)
Q Consensus 198 ~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G--~faa~L~~~~v~v~~v~~~d~s----~~L~~a-~~Rgl--~~~ 268 (363)
..+.|.+.+.+...-.--+.... .+++|||+|-| ++..+++..... ++-+|.. +.|+.+ .+=|+ +.+
T Consensus 27 ~~~~~~~Hi~DSL~~~~~~~~~~-~~~lDiGSGaGfPGipLaI~~p~~~---~~LvEs~~KK~~FL~~~~~~L~L~nv~v 102 (184)
T PF02527_consen 27 PEEIWERHILDSLALLPFLPDFG-KKVLDIGSGAGFPGIPLAIARPDLQ---VTLVESVGKKVAFLKEVVRELGLSNVEV 102 (184)
T ss_dssp HHHHHHHHHHHHHGGGGCS-CCC-SEEEEETSTTTTTHHHHHHH-TTSE---EEEEESSHHHHHHHHHHHHHHT-SSEEE
T ss_pred HHHHHHHHHHHHHHhhhhhccCC-ceEEecCCCCCChhHHHHHhCCCCc---EEEEeCCchHHHHHHHHHHHhCCCCEEE
Confidence 34677766654211101122222 27999999999 444444443333 2333433 345444 33355 556
Q ss_pred eccccccCCCCCCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHHH---HHHHHHHHHhCCcee
Q 017983 269 YHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEM---INKLKPVLHSLQWST 341 (363)
Q Consensus 269 ~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~---~~~i~~l~~~l~W~~ 341 (363)
++...|. ..++.+||+|++. ++. .+..++.-+.+.|+|||.+++.-.... +...+...+.+.++.
T Consensus 103 ~~~R~E~-~~~~~~fd~v~aR-Av~------~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~ 170 (184)
T PF02527_consen 103 INGRAEE-PEYRESFDVVTAR-AVA------PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKV 170 (184)
T ss_dssp EES-HHH-TTTTT-EEEEEEE-SSS------SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEE
T ss_pred EEeeecc-cccCCCccEEEee-hhc------CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEE
Confidence 7777776 3345999999976 333 356688889999999999999865444 444444445554443
No 195
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.72 E-value=4.5e-05 Score=69.35 Aligned_cols=72 Identities=21% Similarity=0.267 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHcCC---CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALERGI---PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~---p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.++.+++.+.++.. .+.+...++..+||++++||+|+|+..+++.. +...+++++.++|||||++++...
T Consensus 70 iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 70 VDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVT-DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcc-cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3778899999988742 35566677788999999999999988776655 466899999999999999998754
No 196
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.72 E-value=7.4e-05 Score=73.40 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=66.0
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeeccccc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLLS 293 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l~ 293 (363)
.+|||+|||+|.++..|+..+. .|+++|.+ .+++.|.+. |+ +..+....+..++-. +.||+|++.
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d---- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN---- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC----
Confidence 6899999999999999998753 46788888 788766543 33 223332222222223 689999987
Q ss_pred cccccCCHHHHHHHHhHhccCCeEEEEEcCHHH-HHHHHHH
Q 017983 294 DVTQRCDIADVAVEMDRILRPGGYVLVQDTLEM-INKLKPV 333 (363)
Q Consensus 294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~l 333 (363)
+.+.++...+.++..-++|++.++++-.... ...++.+
T Consensus 248 --PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l 286 (315)
T PRK03522 248 --PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL 286 (315)
T ss_pred --CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc
Confidence 2233444445555555889999999855443 3444444
No 197
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.71 E-value=4.1e-05 Score=70.87 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEe
Q 017983 6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSA 77 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~ 77 (363)
-|+|+.+++.|+++.-.+.+.+.++.. ||++++||+|+|..+++|+..+ ...++.|+.|++ +++++++.
T Consensus 73 iDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 73 VEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 489999999999874445566667666 9999999999999999988632 367999999998 57777763
No 198
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.70 E-value=0.00017 Score=68.20 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=65.1
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-ee-----ee--ccccccCCCCC-CCcceeeecc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IG-----MY--HDWCESFNTYP-RTYDLLHSSF 290 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~-----~~--~d~~e~~lpfp-~sFDlVh~~~ 290 (363)
..+|||+|||||+|+..|++.++. .|+++|.+ +|+........ +- .+ .+|.+ .+.. ..||+++++.
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga~--~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~--~~~d~~~~DvsfiS~ 151 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGAK--EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPAD--IFPDFATFDVSFISL 151 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCCC--EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhH--cCCCceeeeEEEeeh
Confidence 468999999999999999988643 47888988 67765333321 11 01 12211 2222 4566655542
Q ss_pred ccccccccCCHHHHHHHHhHhccCCeEEEEEcC----------------------HHHHHHHHHHHHhCCceee
Q 017983 291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT----------------------LEMINKLKPVLHSLQWSTN 342 (363)
Q Consensus 291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~----------------------~~~~~~i~~l~~~l~W~~~ 342 (363)
. .+|..|.+.|+| |.+++.-. ...+.++...+..+.|.+.
T Consensus 152 ~-----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 152 I-----------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred H-----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 2 257788888888 77766421 2345666666677777653
No 199
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.70 E-value=7.1e-05 Score=69.92 Aligned_cols=91 Identities=12% Similarity=0.215 Sum_probs=52.3
Q ss_pred eecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEE
Q 017983 26 SVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKA 105 (363)
Q Consensus 26 ~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~ 105 (363)
.+.+...+|.+|++.|+|+|.+++.- -+...+|.|+.|||||||.|.+.--- ..... -+.-.+..++++.++
T Consensus 109 tacdia~vPL~~~svDv~VfcLSLMG--Tn~~~fi~EA~RvLK~~G~L~IAEV~--SRf~~----~~~F~~~~~~~GF~~ 180 (219)
T PF05148_consen 109 TACDIANVPLEDESVDVAVFCLSLMG--TNWPDFIREANRVLKPGGILKIAEVK--SRFEN----VKQFIKALKKLGFKL 180 (219)
T ss_dssp EES-TTS-S--TT-EEEEEEES---S--S-HHHHHHHHHHHEEEEEEEEEEEEG--GG-S-----HHHHHHHHHCTTEEE
T ss_pred EEecCccCcCCCCceeEEEEEhhhhC--CCcHHHHHHHHheeccCcEEEEEEec--ccCcC----HHHHHHHHHHCCCeE
Confidence 34567789999999999999777643 22346999999999999999997220 11111 134445567889999
Q ss_pred EEEecCCCceeEEEEecCC
Q 017983 106 VARSVDSNRIGFVIYQKPV 124 (363)
Q Consensus 106 ~~~~~~~~~~~~~i~~k~~ 124 (363)
..+....+.=-+-.|+|..
T Consensus 181 ~~~d~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 181 KSKDESNKHFVLFEFKKIR 199 (219)
T ss_dssp EEEE--STTEEEEEEEE-S
T ss_pred EecccCCCeEEEEEEEEcC
Confidence 8864322222344456654
No 200
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.70 E-value=0.00023 Score=66.21 Aligned_cols=126 Identities=15% Similarity=0.185 Sum_probs=75.5
Q ss_pred CCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHH----HhcCc---eeeeccccccCCC-----CC-CC
Q 017983 220 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSII----FDRGL---IGMYHDWCESFNT-----YP-RT 282 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a----~~Rgl---~~~~~d~~e~~lp-----fp-~s 282 (363)
..++||.+||++|.-+.+|+.. +..+ +.++.. +..++| ..-|+ +.+....+...++ .+ ++
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i---~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKI---TTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEE---EEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred CCceEEEeccccccHHHHHHHhhcccceE---EEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 3579999999999988888852 3343 333444 444444 33344 3333322222222 22 58
Q ss_pred cceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH----------------HHHHHHHHHHHhCCceeeee--
Q 017983 283 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL----------------EMINKLKPVLHSLQWSTNIY-- 344 (363)
Q Consensus 283 FDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~----------------~~~~~i~~l~~~l~W~~~~~-- 344 (363)
||+|+...- +.+...++..+.+.|||||.+++-+.. .+.+..+.+.+.=+.+..+.
T Consensus 122 fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpi 195 (205)
T PF01596_consen 122 FDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPI 195 (205)
T ss_dssp EEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECS
T ss_pred eeEEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEe
Confidence 999998742 334567888899999999999887431 12233344444445555544
Q ss_pred cceEEEEEec
Q 017983 345 HDQFLVGKKG 354 (363)
Q Consensus 345 ~~~~li~~K~ 354 (363)
.+.+++++|+
T Consensus 196 gdGl~l~~K~ 205 (205)
T PF01596_consen 196 GDGLTLARKR 205 (205)
T ss_dssp TTEEEEEEE-
T ss_pred CCeeEEEEEC
Confidence 7889999885
No 201
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.68 E-value=8.9e-05 Score=69.54 Aligned_cols=127 Identities=20% Similarity=0.288 Sum_probs=81.0
Q ss_pred hhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHh-cCce------ee--------ecccc
Q 017983 210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD-RGLI------GM--------YHDWC 273 (363)
Q Consensus 210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~-Rgl~------~~--------~~d~~ 273 (363)
|++.++.. ...+||+-|||.|.-+.+|+++|. +|+++|.+ ..++.+++ +++. .. +.=+|
T Consensus 29 ~~~~l~~~--~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 29 YLDSLALK--PGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHTTS--TSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHhcCCC--CCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 45444333 345899999999999999999874 57888998 66776644 3331 00 01112
Q ss_pred ccCCCCC----CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEE--EcCH----------HHHHHHHHHHHhC
Q 017983 274 ESFNTYP----RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV--QDTL----------EMINKLKPVLHSL 337 (363)
Q Consensus 274 e~~lpfp----~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii--~D~~----------~~~~~i~~l~~~l 337 (363)
..+..++ +.||+|.=..+|.-++ +....+...-|.++|||||.+++ .+.. -..++|.++.. -
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~ 181 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-P 181 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-T
T ss_pred cccccCChhhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-C
Confidence 2344433 5699999888888775 45678999999999999999333 2210 12466777665 5
Q ss_pred Cceeee
Q 017983 338 QWSTNI 343 (363)
Q Consensus 338 ~W~~~~ 343 (363)
.|++..
T Consensus 182 ~f~i~~ 187 (218)
T PF05724_consen 182 GFEIEE 187 (218)
T ss_dssp TEEEEE
T ss_pred CcEEEE
Confidence 665443
No 202
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.65 E-value=0.00016 Score=69.95 Aligned_cols=130 Identities=17% Similarity=0.258 Sum_probs=83.9
Q ss_pred hccccchhHHHHHHHhhhhcc-ccCCCCCceEEEeccccc----HHHHHhhcCCC----eEEEEeecCCc-chHHHHHh-
Q 017983 194 AFNKDTTHWYALVSDVYVGGL-AINWSSVRNVMDMNASYG----GFAAALIDQPL----WVMNVVPIDAP-DTLSIIFD- 262 (363)
Q Consensus 194 ~F~~~~~~W~~~~~~~y~~~l-~i~~~~~r~VLDvGCG~G----~faa~L~~~~v----~v~~v~~~d~s-~~L~~a~~- 262 (363)
.|=.+.++|.....+ -+..+ .-..++.-+|.-+||+|| ++|..|.+... +.+.|.++|.+ ..|+.|..
T Consensus 70 ~FFR~~~~f~~l~~~-v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 70 EFFRDPEHFEELRDE-VLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred hhccCcHHHHHHHHH-HHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 344666666554432 22111 111123568999999999 46666665432 35678999988 67765521
Q ss_pred --------cCc---------------------------eeeeccccccCCCCCCCcceeeeccccccccccCCHHHHHHH
Q 017983 263 --------RGL---------------------------IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVE 307 (363)
Q Consensus 263 --------Rgl---------------------------~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~E 307 (363)
+|+ .--.|+.-+ ..|+++-||+|+|..|+.++... .-.+++..
T Consensus 149 ~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~-~~~~~~~fD~IfCRNVLIYFd~~-~q~~il~~ 226 (268)
T COG1352 149 IYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLD-DSPFLGKFDLIFCRNVLIYFDEE-TQERILRR 226 (268)
T ss_pred CCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCC-CccccCCCCEEEEcceEEeeCHH-HHHHHHHH
Confidence 222 012344222 23366999999999999998643 45789999
Q ss_pred HhHhccCCeEEEEEcCHHH
Q 017983 308 MDRILRPGGYVLVQDTLEM 326 (363)
Q Consensus 308 m~RVLRPGG~lii~D~~~~ 326 (363)
++..|+|||++++..+..+
T Consensus 227 f~~~L~~gG~LflG~sE~~ 245 (268)
T COG1352 227 FADSLKPGGLLFLGHSETI 245 (268)
T ss_pred HHHHhCCCCEEEEccCccc
Confidence 9999999999999876443
No 203
>PLN02672 methionine S-methyltransferase
Probab=97.64 E-value=0.00026 Score=79.87 Aligned_cols=116 Identities=13% Similarity=0.164 Sum_probs=74.1
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-------------------c---eeee-ccccccCC
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-------------------L---IGMY-HDWCESFN 277 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-------------------l---~~~~-~d~~e~~l 277 (363)
.+|||+|||+|.++..|+...-. ..|+++|.+ ++++.|.+.. + +.++ .|+.+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~--- 195 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLG--- 195 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhh---
Confidence 48999999999999999875211 257888988 7776663221 1 2223 34322
Q ss_pred CCC---CCcceeeecc--------------cccccc-----------c-------cCC---HHHHHHHHhHhccCCeEEE
Q 017983 278 TYP---RTYDLLHSSF--------------LLSDVT-----------Q-------RCD---IADVAVEMDRILRPGGYVL 319 (363)
Q Consensus 278 pfp---~sFDlVh~~~--------------~l~~~~-----------~-------~~~---~~~~L~Em~RVLRPGG~li 319 (363)
+++ ..||+|+++= +..|-+ . .++ +..++.+..++|||||+++
T Consensus 196 ~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 196 YCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred hccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 233 2699999861 110100 0 111 2678899999999999999
Q ss_pred EEcCHHHHHHHH-HHHHhCCcee
Q 017983 320 VQDTLEMINKLK-PVLHSLQWST 341 (363)
Q Consensus 320 i~D~~~~~~~i~-~l~~~l~W~~ 341 (363)
+--..+.-+.+. ++..+..|+.
T Consensus 276 lEiG~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 276 FNMGGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred EEECccHHHHHHHHHHHHCCCCe
Confidence 876666666777 5777766643
No 204
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00025 Score=66.17 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=63.6
Q ss_pred hhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC--
Q 017983 210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-- 280 (363)
Q Consensus 210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-- 280 (363)
.++.|.++++ .+||+||||+|..+|-|++.... |..++.- ...+.|.++ |+ +.+.+... ..-||
T Consensus 64 m~~~L~~~~g--~~VLEIGtGsGY~aAvla~l~~~---V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG--~~G~~~~ 136 (209)
T COG2518 64 MLQLLELKPG--DRVLEIGTGSGYQAAVLARLVGR---VVSIERIEELAEQARRNLETLGYENVTVRHGDG--SKGWPEE 136 (209)
T ss_pred HHHHhCCCCC--CeEEEECCCchHHHHHHHHHhCe---EEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc--ccCCCCC
Confidence 3444555554 69999999999999999885433 3344433 333444332 33 44444432 34566
Q ss_pred CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 281 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 281 ~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
..||.|+.......++. . +.+-|||||.+++-..
T Consensus 137 aPyD~I~Vtaaa~~vP~------~---Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPE------A---LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCH------H---HHHhcccCCEEEEEEc
Confidence 89999999988887653 2 2346999999998644
No 205
>PRK06202 hypothetical protein; Provisional
Probab=97.62 E-value=6.5e-05 Score=70.09 Aligned_cols=70 Identities=13% Similarity=0.179 Sum_probs=54.4
Q ss_pred cCCCCHHHHHHHHHcC--CCceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEE
Q 017983 5 PKDEHEAQIQFALERG--IPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 5 p~D~~~~qvq~A~erg--~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s 76 (363)
--|.++.+++.|+++. -.+.+.+.++..+|+++++||+|+|+.+++|..++. ..+|.|+.|++| |.+++.
T Consensus 93 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 93 AIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred EEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 3589999999999873 224455566778899999999999999998876532 469999999999 455554
No 206
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.62 E-value=6.8e-06 Score=66.15 Aligned_cols=66 Identities=24% Similarity=0.327 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHc----CC-CceeeecccCCC--CCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEE
Q 017983 7 DEHEAQIQFALER----GI-PAILSVIGTQKL--TFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFF 73 (363)
Q Consensus 7 D~~~~qvq~A~er----g~-p~~~~~~~~~~L--Pfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~ 73 (363)
|+|+.+++.|++| +. ...........+ +.+.++||+|+++.+++|+ ++...++..+.++|||||.|
T Consensus 27 D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l-~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 27 DISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL-EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---S-HHHHHHHHTTT-TSS-EE
T ss_pred ECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-hhHHHHHHHHHHHcCCCCCC
Confidence 6777777666555 21 112222222222 2223699999999888887 55678999999999999986
No 207
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.59 E-value=5e-05 Score=70.28 Aligned_cols=72 Identities=24% Similarity=0.334 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHc--CCC-ceeeecccCCCCCCCCCccEEEeCCccccccc--CCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALER--GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDA--QGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~er--g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~--~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|+++..|+.|++| +.+ +.+.+.+... .+|.+.||+|++|.++..+.+ +...++..+...|+|||.|++...
T Consensus 71 vDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 71 VDISPRALARARERLAGLPHVEWIQADVPE-FWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp EES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EeCCHHHHHHHHHhcCCCCCeEEEECcCCC-CCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 48999999999999 545 3344444322 468999999999999977764 234688999999999999999754
No 208
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00071 Score=64.80 Aligned_cols=116 Identities=22% Similarity=0.208 Sum_probs=71.9
Q ss_pred ccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Ccee----eeccccccCCCCCCCc
Q 017983 213 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTYPRTY 283 (363)
Q Consensus 213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl~~----~~~d~~e~~lpfp~sF 283 (363)
.+++.+| .+|||.|.|+|.++++|+..-.-...|+..+.. +.++.|.+. |+.. ...|-++ .-+++.|
T Consensus 89 ~~gi~pg--~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~--~~~~~~v 164 (256)
T COG2519 89 RLGISPG--SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVRE--GIDEEDV 164 (256)
T ss_pred HcCCCCC--CEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccc--ccccccc
Confidence 4566665 499999999999999998521111234445554 455555443 4321 2234333 2234799
Q ss_pred ceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc-CHHHHHHHHHHHHhCCce
Q 017983 284 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWS 340 (363)
Q Consensus 284 DlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~ 340 (363)
|+|+.. ++ ++-++|.-++.+|+|||.+++-- ..+.+.+.-+-++..+|.
T Consensus 165 Dav~LD-----mp---~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 165 DAVFLD-----LP---DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred CEEEEc-----CC---ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 998864 23 34679999999999999988753 444444444444444663
No 209
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.55 E-value=7.9e-05 Score=72.15 Aligned_cols=70 Identities=11% Similarity=0.195 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEE
Q 017983 6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s 76 (363)
-|.|+.+++.|+++ ++.+.+...+....++ +++||+|+|+.++++... +...++.++.|+|||||++++.
T Consensus 148 vD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 148 VDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred EECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 37888888877544 6666666667666666 689999999988866542 2357999999999999997664
No 210
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.54 E-value=7e-05 Score=61.02 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHcC------CCceeeeccc-CCCCCCCCCccEEEeCC-ccccccc--CCCchhhhhcccccCCeEEEEE
Q 017983 7 DEHEAQIQFALERG------IPAILSVIGT-QKLTFPDDAYDLIHCAR-CRVHWDA--QGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 7 D~~~~qvq~A~erg------~p~~~~~~~~-~~LPfpd~sFD~v~cs~-~~~~~~~--~~~~~l~E~~RVLrPGG~~~~s 76 (363)
|.++.+++.|+++- -.+.+...++ ....+. ..||+|+|+. +++++.. +...+|.++.+.|||||+|+++
T Consensus 32 D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 32 DISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp ESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 78899999998773 3355666666 334444 4599999988 5544432 2456899999999999999997
Q ss_pred e
Q 017983 77 A 77 (363)
Q Consensus 77 ~ 77 (363)
.
T Consensus 111 ~ 111 (112)
T PF12847_consen 111 T 111 (112)
T ss_dssp E
T ss_pred E
Confidence 5
No 211
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.52 E-value=0.00016 Score=69.49 Aligned_cols=92 Identities=14% Similarity=0.226 Sum_probs=62.2
Q ss_pred eecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEE
Q 017983 26 SVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKA 105 (363)
Q Consensus 26 ~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~ 105 (363)
.+.+..++|.+|+|.|+++|.+++.- -+...++.|++|||||||.|.+.-- ....++. .....-...|++..
T Consensus 215 ~~cDm~~vPl~d~svDvaV~CLSLMg--tn~~df~kEa~RiLk~gG~l~IAEv--~SRf~dv----~~f~r~l~~lGF~~ 286 (325)
T KOG3045|consen 215 IACDMRNVPLEDESVDVAVFCLSLMG--TNLADFIKEANRILKPGGLLYIAEV--KSRFSDV----KGFVRALTKLGFDV 286 (325)
T ss_pred eeccccCCcCccCcccEEEeeHhhhc--ccHHHHHHHHHHHhccCceEEEEeh--hhhcccH----HHHHHHHHHcCCee
Confidence 34456779999999999998666533 3445799999999999999998621 1122222 22444556788888
Q ss_pred EEEecCCCceeEEEEecCCC
Q 017983 106 VARSVDSNRIGFVIYQKPVS 125 (363)
Q Consensus 106 ~~~~~~~~~~~~~i~~k~~~ 125 (363)
.........--+-.|+|+..
T Consensus 287 ~~~d~~n~~F~lfefkK~~~ 306 (325)
T KOG3045|consen 287 KHKDVSNKYFTLFEFKKTPK 306 (325)
T ss_pred eehhhhcceEEEEEEecCCc
Confidence 77665444444566777643
No 212
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.52 E-value=8.8e-05 Score=75.08 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHc--CCCceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALER--GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~er--g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.|+.|++.|.++ +..+.+...+...+ +++||+|+|...++|... +...++.++.|+|||||+++++..
T Consensus 196 iDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 196 VTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred EeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 38899999999987 44445555555544 589999999887777643 235799999999999999999854
No 213
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.50 E-value=0.00015 Score=66.82 Aligned_cols=72 Identities=26% Similarity=0.363 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeeccc-CCCC--CCCCCccEEEeCCcccccccC--------CCchhhhhcccccC
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGT-QKLT--FPDDAYDLIHCARCRVHWDAQ--------GGKPLLELNRILRP 69 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~-~~LP--fpd~sFD~v~cs~~~~~~~~~--------~~~~l~E~~RVLrP 69 (363)
-|.++.+++.|.++ +.+ +.+.+.++ +.++ |++++||+|++..+. +|... ...+|.++.|+|||
T Consensus 70 VD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~-p~~~~~~~~~~~~~~~~l~~i~~~Lkp 148 (202)
T PRK00121 70 IEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPD-PWPKKRHHKRRLVQPEFLALYARKLKP 148 (202)
T ss_pred EEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCC-CCCCccccccccCCHHHHHHHHHHcCC
Confidence 47889999988764 443 55666777 7787 899999999987653 45321 23589999999999
Q ss_pred CeEEEEEeC
Q 017983 70 GGFFIWSAT 78 (363)
Q Consensus 70 GG~~~~s~~ 78 (363)
||+|+++.+
T Consensus 149 gG~l~i~~~ 157 (202)
T PRK00121 149 GGEIHFATD 157 (202)
T ss_pred CCEEEEEcC
Confidence 999999866
No 214
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.49 E-value=0.00057 Score=66.76 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=87.3
Q ss_pred CCCceEEEecccccHHHHHhhc-CCCeEEEEeecCCc-ch----HHHHHhcCcee---eeccccccCCCCC---CCccee
Q 017983 219 SSVRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DT----LSIIFDRGLIG---MYHDWCESFNTYP---RTYDLL 286 (363)
Q Consensus 219 ~~~r~VLDvGCG~G~faa~L~~-~~v~v~~v~~~d~s-~~----L~~a~~Rgl~~---~~~d~~e~~lpfp---~sFDlV 286 (363)
+..-+||||.||.|.+...... .+....++.-.|.+ .. -+.+.+||+.. +....|-..-.|. -..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 5567999999999986554443 33223345556665 22 35788889833 2233232222233 456999
Q ss_pred eeccccccccccCCHHHHHHHHhHhccCCeEEEEEc--CHHHHHHHHHHHHh----CCceeeee
Q 017983 287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD--TLEMINKLKPVLHS----LQWSTNIY 344 (363)
Q Consensus 287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D--~~~~~~~i~~l~~~----l~W~~~~~ 344 (363)
+.+.+++.+++...+...|.-+.+.|.|||++|.+- -+..++.|...+.+ .-|-++..
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrR 277 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRR 277 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEec
Confidence 999999999987777889999999999999999996 35567777777755 46877654
No 215
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.44 E-value=0.00037 Score=62.75 Aligned_cols=120 Identities=19% Similarity=0.224 Sum_probs=61.2
Q ss_pred cchhHHHHHH-Hhhhhcc-----ccCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCcc---hHHHHHhcC---
Q 017983 198 DTTHWYALVS-DVYVGGL-----AINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPD---TLSIIFDRG--- 264 (363)
Q Consensus 198 ~~~~W~~~~~-~~y~~~l-----~i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s~---~L~~a~~Rg--- 264 (363)
....|..... ..|+... ........+||++|||+|-.+..++.. +. ..|+..|.++ .+....++.
T Consensus 17 G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~--~~Vv~TD~~~~l~~l~~Ni~~N~~~ 94 (173)
T PF10294_consen 17 GGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGA--ARVVLTDYNEVLELLRRNIELNGSL 94 (173)
T ss_dssp ------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T---SEEEEEE-S-HHHHHHHHHHTT---
T ss_pred cEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCC--ceEEEeccchhhHHHHHHHHhcccc
Confidence 4567765332 1355431 112234579999999999666555554 21 1344555443 233322221
Q ss_pred ---c-eeeeccccccC-CC-CC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 265 ---L-IGMYHDWCESF-NT-YP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 265 ---l-~~~~~d~~e~~-lp-fp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
- .....+|.+.. .. .. +.||+|+++.++-. ....+.++.=+.++|+|+|.+++..
T Consensus 95 ~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~---~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 95 LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYD---EELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp -----EEEE--TTS-HHHHHHS-SSBSEEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred ccccccCcEEEecCcccccccccccCCEEEEecccch---HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 1 22345776531 11 23 78999999999873 3456788899999999999988864
No 216
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.42 E-value=0.00046 Score=65.87 Aligned_cols=100 Identities=10% Similarity=0.155 Sum_probs=63.7
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc---------e------------------------
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---------I------------------------ 266 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl---------~------------------------ 266 (363)
...+|||||..|.+.+.+++.-. ..-+.++|+. ..++.|.+..- .
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 34799999999999999987521 1224555554 34444443310 0
Q ss_pred -------------eeeccccccCCCCC-CCcceeeecccc--cccc-ccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 267 -------------GMYHDWCESFNTYP-RTYDLLHSSFLL--SDVT-QRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 267 -------------~~~~d~~e~~lpfp-~sFDlVh~~~~l--~~~~-~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
..+.+. ..+|-+. +.||+|.|-.+= .|+. ..+++..++.-+.|.|+|||++++--
T Consensus 138 t~~~p~n~~f~~~n~vle~-~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLES-DDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccCCcchhcccccEEEec-chhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 001110 1244455 889999986442 2543 33568899999999999999999864
No 217
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.41 E-value=0.00047 Score=69.49 Aligned_cols=108 Identities=13% Similarity=0.194 Sum_probs=67.1
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeeccccc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLLS 293 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l~ 293 (363)
.+|||++||+|.|+..++..+. .|+++|.+ .+++.+.+. |+ +..+....+..++-. +.||+|++. .
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D---P 308 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN---P 308 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC---C
Confidence 5899999999999999997653 46777877 677655543 22 222322222223222 569999887 2
Q ss_pred cccccCCH-HHHHHHHhHhccCCeEEEEEcCHH-HHHHHHHHHHhCCceee
Q 017983 294 DVTQRCDI-ADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTN 342 (363)
Q Consensus 294 ~~~~~~~~-~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~ 342 (363)
.+.++ ..++..+. -++|++.++++-... ....++.| -.|+..
T Consensus 309 ---Pr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~ 352 (374)
T TIGR02085 309 ---PRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIE 352 (374)
T ss_pred ---CCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEE
Confidence 22232 34445554 489999999986654 44556666 246544
No 218
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.41 E-value=8.7e-05 Score=68.41 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHcCCCceeeecccCCC-CCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 7 DEHEAQIQFALERGIPAILSVIGTQKL-TFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 7 D~~~~qvq~A~erg~p~~~~~~~~~~L-Pfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
++++..|..+.+||+++.-..++. .| -|||+|||.|++|..+.+... +..+|.||.|| |...++|-|
T Consensus 43 Eid~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sFD~VIlsqtLQ~~~~-P~~vL~EmlRV---gr~~IVsFP 110 (193)
T PF07021_consen 43 EIDPDNVAACVARGVSVIQGDLDE-GLADFPDQSFDYVILSQTLQAVRR-PDEVLEEMLRV---GRRAIVSFP 110 (193)
T ss_pred ecCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCCccEEehHhHHHhHhH-HHHHHHHHHHh---cCeEEEEec
Confidence 578889999999999866665554 46 499999999999999988764 77899999777 667888876
No 219
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.40 E-value=0.00046 Score=63.89 Aligned_cols=97 Identities=8% Similarity=0.116 Sum_probs=56.0
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeeccccc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLLS 293 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l~ 293 (363)
.+|||+|||+|.++..++.++. ..|+.++.+ ..++.+.+. |+ +.++...+...++.. +.||+|++. .
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~D---P 129 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVD---P 129 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEEC---C
Confidence 5899999999999986544432 245666666 444433321 22 233333333334434 679999987 2
Q ss_pred cccccCCHHHHHHHHhH--hccCCeEEEEEcCH
Q 017983 294 DVTQRCDIADVAVEMDR--ILRPGGYVLVQDTL 324 (363)
Q Consensus 294 ~~~~~~~~~~~L~Em~R--VLRPGG~lii~D~~ 324 (363)
.+.. .-.+.++.-+.. +|+|+|.+++.-..
T Consensus 130 Py~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 130 PFRK-GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 2211 112344444433 47999999988543
No 220
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.40 E-value=1.1e-05 Score=72.09 Aligned_cols=52 Identities=27% Similarity=0.395 Sum_probs=45.8
Q ss_pred cCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeCCCC
Q 017983 30 TQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSATPVY 81 (363)
Q Consensus 30 ~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~~~~ 81 (363)
...++|.|+|.|+|.|..++.|.+-+ ...+++|.+|+|||||+|-+++|...
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 55689999999999999999998754 45799999999999999999999653
No 221
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.37 E-value=0.00046 Score=71.38 Aligned_cols=127 Identities=18% Similarity=0.236 Sum_probs=70.1
Q ss_pred CchhhccccchhHHHHHHH--hhhhccccCCC----CCceEEEecccccHHHHHhhcCC---CeEEEEeecCCc-c---h
Q 017983 190 DSEEAFNKDTTHWYALVSD--VYVGGLAINWS----SVRNVMDMNASYGGFAAALIDQP---LWVMNVVPIDAP-D---T 256 (363)
Q Consensus 190 ~~~e~F~~~~~~W~~~~~~--~y~~~l~i~~~----~~r~VLDvGCG~G~faa~L~~~~---v~v~~v~~~d~s-~---~ 256 (363)
.+-|.|++|..+-..+-.. ..+.... ... ....|||+|||+|-+....+..+ .....|.++..+ + +
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~al~D~~-~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~ 229 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEALKDRV-RKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVT 229 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHHHHHH-TTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHH
T ss_pred ccHhhHhcCHHHHHHHHHHHHHHHHhhh-hhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHH
Confidence 4678999988877654432 1222111 111 13579999999998753332211 012235555554 2 2
Q ss_pred HH-HHHhcCc---eeeeccccccCCCCCCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEE
Q 017983 257 LS-IIFDRGL---IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVL 319 (363)
Q Consensus 257 L~-~a~~Rgl---~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~li 319 (363)
++ .+...|. +.+++...+. ..-|...|+|++..+=+ +...+.+...|.-.+|.|||||.++
T Consensus 230 l~~~v~~n~w~~~V~vi~~d~r~-v~lpekvDIIVSElLGs-fg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 230 LQKRVNANGWGDKVTVIHGDMRE-VELPEKVDIIVSELLGS-FGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHHTTTTTTEEEEES-TTT-SCHSS-EEEEEE---BT-TBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HHHHHHhcCCCCeEEEEeCcccC-CCCCCceeEEEEeccCC-ccccccCHHHHHHHHhhcCCCCEEe
Confidence 32 2233333 6677765443 44568999999865544 4455567788999999999999754
No 222
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=4.2e-05 Score=68.35 Aligned_cols=47 Identities=21% Similarity=0.370 Sum_probs=41.3
Q ss_pred ccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 274 ESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 274 e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
...++|. ||.|+|.|.++++|+.-. .-..+++|.+|+|||||++-|.
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEE
Confidence 3458898 999999999999999754 3468999999999999999997
No 223
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.35 E-value=0.0012 Score=62.27 Aligned_cols=128 Identities=16% Similarity=0.262 Sum_probs=79.3
Q ss_pred CCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHh----cCc---eeeec--cccccCCCCC-CCcceee
Q 017983 220 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFD----RGL---IGMYH--DWCESFNTYP-RTYDLLH 287 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~----Rgl---~~~~~--d~~e~~lpfp-~sFDlVh 287 (363)
..++||.+|.+.|.-+..|+.. +-.. .++.++.. ++.+.|++ -|+ +..+. |+-+...-.. .+||+|+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g-~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDG-RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCC-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 4579999999999888887752 1011 25555665 55555543 243 22222 4332212145 9999999
Q ss_pred eccccccccccCCHHHHHHHHhHhccCCeEEEEEcC--------------HHHHHHHHHHHHhCCce----eeee--cce
Q 017983 288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT--------------LEMINKLKPVLHSLQWS----TNIY--HDQ 347 (363)
Q Consensus 288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~--------------~~~~~~i~~l~~~l~W~----~~~~--~~~ 347 (363)
... ++.+..+++.+.-+.|||||.+++-+. ......++.....+.++ .... .+.
T Consensus 138 IDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDG 211 (219)
T COG4122 138 IDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDG 211 (219)
T ss_pred EeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEecCCc
Confidence 762 334456799999999999998877531 12344456655555554 3333 488
Q ss_pred EEEEEec
Q 017983 348 FLVGKKG 354 (363)
Q Consensus 348 ~li~~K~ 354 (363)
++++.|.
T Consensus 212 l~v~~k~ 218 (219)
T COG4122 212 LLLSRKR 218 (219)
T ss_pred eEEEeec
Confidence 9998885
No 224
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.34 E-value=0.00029 Score=69.61 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCC-----ccc--ccc-cCCCchhhhhcccccCCeE
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCAR-----CRV--HWD-AQGGKPLLELNRILRPGGF 72 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~-----~~~--~~~-~~~~~~l~E~~RVLrPGG~ 72 (363)
-|+++.+++.|++. |++ +.+...++..+|+++++||+|+|.- ... +.. +....+|.++.|+|||||+
T Consensus 210 ~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~ 289 (329)
T TIGR01177 210 CDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGW 289 (329)
T ss_pred EcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcE
Confidence 48888888877654 655 3667788899999999999999941 110 100 0024689999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEec
Q 017983 73 FIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSV 110 (363)
Q Consensus 73 ~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~ 110 (363)
+++..|.-. .++.+++...| .+.++.
T Consensus 290 lv~~~~~~~-----------~~~~~~~~~g~-i~~~~~ 315 (329)
T TIGR01177 290 IVYAVPTRI-----------DLESLAEDAFR-VVKRFE 315 (329)
T ss_pred EEEEEcCCC-----------CHHHHHhhcCc-chheee
Confidence 999987321 34456777778 555543
No 225
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.34 E-value=0.00032 Score=69.77 Aligned_cols=96 Identities=20% Similarity=0.282 Sum_probs=60.9
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchH----HHHHhcCc---eeeeccccccCCCCC-CCcceeeecccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTL----SIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLL 292 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L----~~a~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l 292 (363)
.+.|||+|||+|.+...-++.|. ..|.+++.|++. +++..-++ +.++..-.|. +-.| ...|+|++.++=
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEd-i~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVED-IELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHHHHHHHHHHhcCccceEEEeecceEE-EecCccceeEEeehhhh
Confidence 46999999999988777666653 245666666444 44555554 3333322222 2345 999999986543
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEE
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVL 319 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~li 319 (363)
.-+-....+..+|--=+|-|+|||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 322111235667777899999999754
No 226
>PLN03075 nicotianamine synthase; Provisional
Probab=97.31 E-value=0.00024 Score=69.68 Aligned_cols=107 Identities=17% Similarity=0.238 Sum_probs=73.1
Q ss_pred CCCCHHHHHHHHHc-----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccc-cCCCchhhhhcccccCCeEEEEEe
Q 017983 6 KDEHEAQIQFALER-----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWD-AQGGKPLLELNRILRPGGFFIWSA 77 (363)
Q Consensus 6 ~D~~~~qvq~A~er-----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~-~~~~~~l~E~~RVLrPGG~~~~s~ 77 (363)
-|.++..++.|++. |+. +.+...++..++-..+.||+|+|. ++|+|. .+...+|..+.|+|||||+|++..
T Consensus 155 iD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 155 FDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 48899999988864 332 555666665554335789999999 999995 456789999999999999999985
Q ss_pred CC-----CCC-CChhhHHHHHHHHHHHhhcceEEEEEecCCCc--eeEEEEecCCC
Q 017983 78 TP-----VYR-HDDRHRSVWNAMVNLTESMCWKAVARSVDSNR--IGFVIYQKPVS 125 (363)
Q Consensus 78 ~~-----~~~-~~~e~~~~~~~~~~l~~~~cw~~~~~~~~~~~--~~~~i~~k~~~ 125 (363)
.- .|. -+++ ++ + .|+.....|-.+. ..+.|.+|+..
T Consensus 234 ~~G~r~~LYp~v~~~---------~~--~-gf~~~~~~~P~~~v~Nsvi~~r~~~~ 277 (296)
T PLN03075 234 AHGARAFLYPVVDPC---------DL--R-GFEVLSVFHPTDEVINSVIIARKPGG 277 (296)
T ss_pred ccchHhhcCCCCChh---------hC--C-CeEEEEEECCCCCceeeEEEEEeecC
Confidence 31 121 1121 11 2 8888887764333 25666677543
No 227
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.31 E-value=8.7e-05 Score=70.26 Aligned_cols=70 Identities=24% Similarity=0.346 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHHHc---CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983 6 KDEHEAQIQFALER---GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 6 ~D~~~~qvq~A~er---g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s 76 (363)
-|.|..++|.++.. ++...-.+.+-+.|||.+++||+|++|..+ ||..|...-+..+.-.|||.|.|+.|
T Consensus 101 ~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 101 MDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred eecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-hhhccCchHHHHHHHhcCCCccchhH
Confidence 47888999998876 455556677889999999999999999877 99988778999999999999999887
No 228
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.30 E-value=0.00025 Score=65.90 Aligned_cols=72 Identities=18% Similarity=0.325 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHc----CCCceeeecccCCCC-CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALER----GIPAILSVIGTQKLT-FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LP-fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.++.+++.|.++ +..+.+...+...++ .+++.||+|+|+.++.|.. +...+|.++.|+|+|||+++++.+
T Consensus 76 iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~-~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 76 IDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVP-DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccC-CHHHHHHHHHHHcCCCcEEEEEec
Confidence 37788888888875 444555555655554 5668999999998887765 356789999999999999999866
No 229
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.30 E-value=0.0015 Score=63.38 Aligned_cols=115 Identities=17% Similarity=0.291 Sum_probs=78.2
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chH---HHHHhc----Cc---------------------------
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTL---SIIFDR----GL--------------------------- 265 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L---~~a~~R----gl--------------------------- 265 (363)
.-+||==|||.|.++-.++..+.. +.+.+.| -|| .++.+. +-
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~---~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYA---VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccce---EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 458999999999999999998754 4566666 454 233332 10
Q ss_pred -------------eeeeccccccCCCCC-----CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE------
Q 017983 266 -------------IGMYHDWCESFNTYP-----RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ------ 321 (363)
Q Consensus 266 -------------~~~~~d~~e~~lpfp-----~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~------ 321 (363)
.-..+|..+- |+ ++||.|++.+.+-- ..++.+.|..|.++|||||++|=.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~---y~~~~~~~~~d~VvT~FFIDT---A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh 207 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEV---YGPDENKGSFDVVVTCFFIDT---AENIIEYIETIEHLLKPGGYWINFGPLLYH 207 (270)
T ss_pred cCcccccCCCCceeEecCccEEe---cCCcccCCcccEEEEEEEeec---hHHHHHHHHHHHHHhccCCEEEecCCcccc
Confidence 0011222221 23 49999988855542 346889999999999999965532
Q ss_pred --cC-------HH-HHHHHHHHHHhCCceeeee
Q 017983 322 --DT-------LE-MINKLKPVLHSLQWSTNIY 344 (363)
Q Consensus 322 --D~-------~~-~~~~i~~l~~~l~W~~~~~ 344 (363)
+. .+ .+++|+.+++.+.|+...+
T Consensus 208 ~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 208 FEPMSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred CCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 32 22 4799999999999998765
No 230
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.25 E-value=0.0025 Score=61.88 Aligned_cols=121 Identities=20% Similarity=0.344 Sum_probs=70.3
Q ss_pred cchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc-------Cceeee
Q 017983 198 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR-------GLIGMY 269 (363)
Q Consensus 198 ~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R-------gl~~~~ 269 (363)
+++.|...|.+ -+.+.. ......+||+|||+|..+..|+..=.. ..++++|.| ..+..|.+. |-+.+.
T Consensus 129 ETEE~V~~Vid-~~~~~~--~~~~~~ildlgtGSGaIslsll~~L~~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 129 ETEEWVEAVID-ALNNSE--HSKHTHILDLGTGSGAISLSLLHGLPQ-CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred cHHHHHHHHHH-HHhhhh--hcccceEEEecCCccHHHHHHHhcCCC-ceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 45778887765 232221 111238999999999998888763111 135677777 555544443 224444
Q ss_pred cccc--ccCCCCC---CCcceeeec--cccc------------ccc---------ccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 270 HDWC--ESFNTYP---RTYDLLHSS--FLLS------------DVT---------QRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 270 ~d~~--e~~lpfp---~sFDlVh~~--~~l~------------~~~---------~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
|... +...|++ +.+|+++|+ ++.+ |-+ -...+..+..=.-|.|+|||++.+.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 3211 2245554 999999986 1111 100 0011344556678999999999987
Q ss_pred c
Q 017983 322 D 322 (363)
Q Consensus 322 D 322 (363)
-
T Consensus 285 ~ 285 (328)
T KOG2904|consen 285 L 285 (328)
T ss_pred e
Confidence 3
No 231
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.22 E-value=0.00034 Score=64.31 Aligned_cols=71 Identities=18% Similarity=0.338 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHc----CC-CceeeecccCCCCCC-CCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 7 DEHEAQIQFALER----GI-PAILSVIGTQKLTFP-DDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 7 D~~~~qvq~A~er----g~-p~~~~~~~~~~LPfp-d~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
|.++.++..|+++ ++ ...+...+++.++++ .++||+|+|+.+++|.. +...+|.++.++|+|||+++++.+
T Consensus 74 D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~-~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 74 DASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVP-DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred eCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCC-CHHHHHHHHHHhcCCCcEEEEEec
Confidence 6788888888775 44 355555666666655 48999999988876655 466899999999999999999865
No 232
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.21 E-value=0.00084 Score=65.19 Aligned_cols=69 Identities=17% Similarity=0.144 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.++.+++.|+++ ++...+.......++++++.||+|+|.....+ ...++.++.|+|||||+|++|+.
T Consensus 188 vDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~----l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 188 IDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV----IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH----HHHHHHHHHHHcCCCcEEEEEeC
Confidence 48899999998876 33322222222235667889999999754322 23688999999999999999986
No 233
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.20 E-value=0.00057 Score=62.39 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeecccCCCC---CCCCCccEEEeCCcccccccCC--------CchhhhhcccccC
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGTQKLT---FPDDAYDLIHCARCRVHWDAQG--------GKPLLELNRILRP 69 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LP---fpd~sFD~v~cs~~~~~~~~~~--------~~~l~E~~RVLrP 69 (363)
-|.++.+++.|.++ |+. +.+...++..++ +++++||.|++... .||+... ..++.++.|+|||
T Consensus 46 vD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p-dpw~k~~h~~~r~~~~~~l~~~~r~Lkp 124 (194)
T TIGR00091 46 IEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP-DPWPKKRHNKRRITQPHFLKEYANVLKK 124 (194)
T ss_pred EEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC-CcCCCCCccccccCCHHHHHHHHHHhCC
Confidence 36778888777654 454 455556666554 67889999998643 4665321 2489999999999
Q ss_pred CeEEEEEeC
Q 017983 70 GGFFIWSAT 78 (363)
Q Consensus 70 GG~~~~s~~ 78 (363)
||.|++++.
T Consensus 125 gG~l~~~td 133 (194)
T TIGR00091 125 GGVIHFKTD 133 (194)
T ss_pred CCEEEEEeC
Confidence 999999866
No 234
>PLN02823 spermine synthase
Probab=97.19 E-value=0.0009 Score=66.80 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=63.0
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc----------eeeeccccccCCCCC-CCcceee
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----------IGMYHDWCESFNTYP-RTYDLLH 287 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl----------~~~~~d~~e~~lpfp-~sFDlVh 287 (363)
..++||-+|+|.|+.+.++++++. +..++.++.. ++++++.+.-. +.++.+.+-.++.-. ++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 457999999999999998887531 2345566666 57777765321 222332233344444 7999999
Q ss_pred ecccccccc-ccC---CHHHHHH-HHhHhccCCeEEEEE
Q 017983 288 SSFLLSDVT-QRC---DIADVAV-EMDRILRPGGYVLVQ 321 (363)
Q Consensus 288 ~~~~l~~~~-~~~---~~~~~L~-Em~RVLRPGG~lii~ 321 (363)
+.. ..... ..+ --..++. .+.|.|+|||.+++.
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 873 22110 000 0135676 899999999998875
No 235
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.19 E-value=0.00089 Score=60.85 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 7 DEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
|.++.+++.|.+. |++ +.+...+++.++ ++++||+|+|.. . + +...++.++.|+|||||.+++...
T Consensus 73 D~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~-~---~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 73 ESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L-A---SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred eCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-h---CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 7788877766543 665 555666677775 368999998853 2 2 223588899999999999999855
No 236
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.15 E-value=0.00084 Score=64.69 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=45.0
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC---ceeeeccccccCCCCCC-Ccceeeec
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG---LIGMYHDWCESFNTYPR-TYDLLHSS 289 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg---l~~~~~d~~e~~lpfp~-sFDlVh~~ 289 (363)
..+|||+|||+|.++..|++++. .|+++|.+ +|++.+.++. -+.+++.... .++++. .+|.|+++
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~-~~~~~~~~~~~vv~N 112 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDAL-KVDLSELQPLKVVAN 112 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhh-cCCHHHcCcceEEEe
Confidence 35899999999999999998753 46788888 8888887653 2333332222 245552 26888876
No 237
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.14 E-value=0.0024 Score=61.78 Aligned_cols=120 Identities=15% Similarity=0.165 Sum_probs=75.8
Q ss_pred CCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc--Cceeee-----ccccccCCCCCCCcceeeecc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR--GLIGMY-----HDWCESFNTYPRTYDLLHSSF 290 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R--gl~~~~-----~d~~e~~lpfp~sFDlVh~~~ 290 (363)
..++|||+|||+|.-.-+..+. + ....++.+|.+ .|++++..= ...... ...-....+++ ..|+|++++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP-PDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC-CCcEEEEeh
Confidence 4579999999999765555442 2 34467778888 777654331 111100 00001123333 349999999
Q ss_pred ccccccccCCHHHHHHHHhHhccCCeEEEEEcC-----HHHHHHHHHHHHhCCceeeee
Q 017983 291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-----LEMINKLKPVLHSLQWSTNIY 344 (363)
Q Consensus 291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~l~~~l~W~~~~~ 344 (363)
+|..+++ .....++..+.+-+.+ +++|-|. -..+.++++.+....+.+.+.
T Consensus 111 ~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~AP 166 (274)
T PF09243_consen 111 VLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAP 166 (274)
T ss_pred hhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceECC
Confidence 9999987 6677888888777766 8888775 346777777775555555443
No 238
>PRK04148 hypothetical protein; Provisional
Probab=97.13 E-value=0.0019 Score=56.49 Aligned_cols=89 Identities=13% Similarity=0.205 Sum_probs=59.4
Q ss_pred CCceEEEecccccH-HHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC--CCcceeeeccccccc
Q 017983 220 SVRNVMDMNASYGG-FAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP--RTYDLLHSSFLLSDV 295 (363)
Q Consensus 220 ~~r~VLDvGCG~G~-faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp--~sFDlVh~~~~l~~~ 295 (363)
+..+|||||||+|. ++..|++.+. +|+++|.+ +.++.+.+++...+..|..+ .++. ..+|+|.+-+-
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~--p~~~~y~~a~liysirp---- 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFN--PNLEIYKNAKLIYSIRP---- 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCC--CCHHHHhcCCEEEEeCC----
Confidence 34689999999995 9999998775 46777888 77888888887666666533 2233 88898886522
Q ss_pred cccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 296 TQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 296 ~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
+.++...+.++.+-+ |.-++|.
T Consensus 87 --p~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 87 --PRDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred --CHHHHHHHHHHHHHc--CCCEEEE
Confidence 123445555555533 3344444
No 239
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.06 E-value=0.00048 Score=62.55 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHcCCCceeeecccCC-C-CCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 7 DEHEAQIQFALERGIPAILSVIGTQK-L-TFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 7 D~~~~qvq~A~erg~p~~~~~~~~~~-L-Pfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
|.++.+++.|.++++.. ...+++. + +|++++||+|+|+.+++|.. ++..+|.|+.|++++ .+++.|
T Consensus 43 D~s~~~i~~a~~~~~~~--~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~-d~~~~l~e~~r~~~~---~ii~~p 110 (194)
T TIGR02081 43 EIDQDGVLACVARGVNV--IQGDLDEGLEAFPDKSFDYVILSQTLQATR-NPEEILDEMLRVGRH---AIVSFP 110 (194)
T ss_pred eCCHHHHHHHHHcCCeE--EEEEhhhcccccCCCCcCEEEEhhHhHcCc-CHHHHHHHHHHhCCe---EEEEcC
Confidence 88999999998888643 3445443 5 58999999999998886655 467899999888664 455544
No 240
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.05 E-value=0.0016 Score=61.87 Aligned_cols=91 Identities=18% Similarity=0.035 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCCh
Q 017983 6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDD 85 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~ 85 (363)
-|+++.+++.|+++.-...+ .+...++..+.+||+|+|+..... ...++.++.|+|||||+|++++...
T Consensus 148 iDis~~~l~~A~~n~~~~~~--~~~~~~~~~~~~fD~Vvani~~~~----~~~l~~~~~~~LkpgG~lilsgi~~----- 216 (250)
T PRK00517 148 VDIDPQAVEAARENAELNGV--ELNVYLPQGDLKADVIVANILANP----LLELAPDLARLLKPGGRLILSGILE----- 216 (250)
T ss_pred EECCHHHHHHHHHHHHHcCC--CceEEEccCCCCcCEEEEcCcHHH----HHHHHHHHHHhcCCCcEEEEEECcH-----
Confidence 48899999999876211111 011123444448999999754322 2358899999999999999997631
Q ss_pred hhHHHHHHHHHHHhhcceEEEEEec
Q 017983 86 RHRSVWNAMVNLTESMCWKAVARSV 110 (363)
Q Consensus 86 e~~~~~~~~~~l~~~~cw~~~~~~~ 110 (363)
.....+....+...++.+....
T Consensus 217 ---~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 217 ---EQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred ---hhHHHHHHHHHHCCCEEEEEEE
Confidence 1234556666777787766543
No 241
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.03 E-value=0.0014 Score=53.86 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=49.2
Q ss_pred cCCCCHHHHHHHHHc----CCC-ceeeecccCC-CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983 5 PKDEHEAQIQFALER----GIP-AILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA 77 (363)
Q Consensus 5 p~D~~~~qvq~A~er----g~p-~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~ 77 (363)
--|.++.+++.|.+. +.+ +.+...++.. +++...+||.|++..+..+ ...++.++.|+|||||+|+++.
T Consensus 48 ~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 48 AIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGL----LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcchh----HHHHHHHHHHHcCCCCEEEEEe
Confidence 347888999887653 444 4444444443 5555579999998754433 2369999999999999999874
No 242
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.02 E-value=0.00059 Score=66.12 Aligned_cols=67 Identities=22% Similarity=0.312 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEE
Q 017983 7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s 76 (363)
.+|+.|+++|+++ |++ +.+...+...++. +||.|++-.+.+|... +-..++..+.|+|||||.+++.
T Consensus 92 tlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 92 TLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred ECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 4689999998755 665 5566666666655 9999999999999853 3357999999999999999875
No 243
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.0046 Score=61.82 Aligned_cols=108 Identities=13% Similarity=0.092 Sum_probs=68.9
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeec--cc
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSS--FL 291 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~--~~ 291 (363)
.+|||==||||+|..+..-.| .+++++|.. .|+.-+... |+ ..++.-+....+|++ ++||.|.|. +.
T Consensus 199 ~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYG 275 (347)
T COG1041 199 ELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYG 275 (347)
T ss_pred CEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCC
Confidence 489999999999976654333 457888988 777544322 11 111211112369999 889999985 12
Q ss_pred cccccccC----CHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHH
Q 017983 292 LSDVTQRC----DIADVAVEMDRILRPGGYVLVQDTLEMINKLKP 332 (363)
Q Consensus 292 l~~~~~~~----~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~ 332 (363)
.+.-.... -..++|.++.+|||+||++++--........++
T Consensus 276 rst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~~ 320 (347)
T COG1041 276 RSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELEE 320 (347)
T ss_pred cccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHhh
Confidence 22101111 257899999999999999988766444444444
No 244
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.98 E-value=0.0038 Score=65.01 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=59.2
Q ss_pred CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHH---HHhc-Cc--eeeeccccccCC-CCCCCcceee---
Q 017983 219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSI---IFDR-GL--IGMYHDWCESFN-TYPRTYDLLH--- 287 (363)
Q Consensus 219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~---a~~R-gl--~~~~~d~~e~~l-pfp~sFDlVh--- 287 (363)
....+|||++||.|+=+..|+..--....|++.|.+ +.+.. ..+| |+ +.+.+....... .++.+||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 345699999999998666665421000135677776 43333 2333 54 222222122111 3458899999
Q ss_pred -ecc--ccccccc------cCCH-------HHHHHHHhHhccCCeEEEEEc
Q 017983 288 -SSF--LLSDVTQ------RCDI-------ADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 288 -~~~--~l~~~~~------~~~~-------~~~L~Em~RVLRPGG~lii~D 322 (363)
|+. +|..-++ ..++ .++|....+.|||||+++.+.
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 652 2332110 0000 568888999999999999984
No 245
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.98 E-value=0.002 Score=57.75 Aligned_cols=71 Identities=17% Similarity=0.113 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCC--------------------Cchhh
Q 017983 6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG--------------------GKPLL 61 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~--------------------~~~l~ 61 (363)
-|.++.+++.|.++ ++.+.+...+....+ .++||+|+|+...++..+.. ..++.
T Consensus 47 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (179)
T TIGR00537 47 TDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLD 124 (179)
T ss_pred EECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHH
Confidence 37888998888775 444445555544433 46999999986655443210 23699
Q ss_pred hhcccccCCeEEEEEeC
Q 017983 62 ELNRILRPGGFFIWSAT 78 (363)
Q Consensus 62 E~~RVLrPGG~~~~s~~ 78 (363)
++.|+|||||.+++..+
T Consensus 125 ~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 125 ELPEILKEGGRVQLIQS 141 (179)
T ss_pred hHHHhhCCCCEEEEEEe
Confidence 99999999999999865
No 246
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.95 E-value=0.002 Score=61.59 Aligned_cols=66 Identities=11% Similarity=0.127 Sum_probs=45.3
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceeeeccccccCCCCC-CCcceeeecccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYP-RTYDLLHSSFLL 292 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~~~d~~e~~lpfp-~sFDlVh~~~~l 292 (363)
..+|||+|||+|.++..|++++. .++++|.. .+++.+.++- -+.+++.. .+.++ ..||.|+++.-+
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D---~~~~~~~~~d~Vv~NlPy 101 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGD---ALKVDLPEFNKVVSNLPY 101 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEec---cccCCchhceEEEEcCCc
Confidence 46999999999999999998753 46777877 7887776652 13333322 23334 458999887443
No 247
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.94 E-value=0.0069 Score=54.56 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV 80 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~ 80 (363)
-|.++.+++.|+++ +++ +.+...++ ..+++ ++||+|++.....+ ...++.++.|+|+|||++++.....
T Consensus 61 vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~-~~~~~-~~~D~v~~~~~~~~----~~~~l~~~~~~Lk~gG~lv~~~~~~ 134 (187)
T PRK08287 61 IERNPDALRLIKENRQRFGCGNIDIIPGEA-PIELP-GKADAIFIGGSGGN----LTAIIDWSLAHLHPGGRLVLTFILL 134 (187)
T ss_pred EECCHHHHHHHHHHHHHhCCCCeEEEecCc-hhhcC-cCCCEEEECCCccC----HHHHHHHHHHhcCCCeEEEEEEecH
Confidence 38888888888764 443 33333333 23554 68999998754332 2358899999999999999975411
Q ss_pred CCCChhhHHHHHHHHHHHhhcceEEEE
Q 017983 81 YRHDDRHRSVWNAMVNLTESMCWKAVA 107 (363)
Q Consensus 81 ~~~~~e~~~~~~~~~~l~~~~cw~~~~ 107 (363)
.....+..+.++.+++.+.
T Consensus 135 --------~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 135 --------ENLHSALAHLEKCGVSELD 153 (187)
T ss_pred --------hhHHHHHHHHHHCCCCcce
Confidence 1234555666677765544
No 248
>PRK13699 putative methylase; Provisional
Probab=96.92 E-value=0.02 Score=54.03 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=29.5
Q ss_pred CCCCCCccEEEeCC----ccccccc-----C-----CCchhhhhcccccCCeEEEEE
Q 017983 34 TFPDDAYDLIHCAR----CRVHWDA-----Q-----GGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 34 Pfpd~sFD~v~cs~----~~~~~~~-----~-----~~~~l~E~~RVLrPGG~~~~s 76 (363)
.+||+|+|+|+.+- ....... + ....+.|+.|||||||.+++-
T Consensus 15 ~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 15 RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 58999999999862 0000000 0 025789999999999999864
No 249
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=96.92 E-value=0.0053 Score=58.83 Aligned_cols=117 Identities=20% Similarity=0.256 Sum_probs=67.3
Q ss_pred hccccCCCCCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHHHhc----Cc---eee-eccccccCCC-
Q 017983 212 GGLAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR----GL---IGM-YHDWCESFNT- 278 (363)
Q Consensus 212 ~~l~i~~~~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~-~~d~~e~~lp- 278 (363)
..++|.+|+ +||+.|.|+|+++.+|+.. ... |...+.. +..+.|.+. |+ +.+ ..|.|+...+
T Consensus 34 ~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~---v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 34 MRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGH---VYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSE---EEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeE---EEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 345676664 9999999999999988852 123 3444555 555544433 44 333 3465643221
Q ss_pred -CCCCcceeeeccccccccccCCHHHHHHHHhHhc-cCCeEEEEE-cCHHHHHHHHHHHHhCCcee
Q 017983 279 -YPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRIL-RPGGYVLVQ-DTLEMINKLKPVLHSLQWST 341 (363)
Q Consensus 279 -fp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVL-RPGG~lii~-D~~~~~~~i~~l~~~l~W~~ 341 (363)
..+.||.|+-. ++++ -.+|.-+.++| ||||.+++- -..+.+.+.-+-++...|..
T Consensus 109 ~~~~~~DavfLD-----lp~P---w~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 109 ELESDFDAVFLD-----LPDP---WEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp T-TTSEEEEEEE-----SSSG---GGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred cccCcccEEEEe-----CCCH---HHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 12789988754 3332 34889999999 999998775 44554444444445556754
No 250
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.91 E-value=0.0019 Score=59.44 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=48.5
Q ss_pred CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.++.+++.|.++ |+. +.+...++...+.++++||+|++..+..+ +..|+.|+|+|||+|++...
T Consensus 103 iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~-------~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 103 VEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAAST-------IPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred EeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCcch-------hhHHHHHhcCcCcEEEEEEc
Confidence 37888888888764 554 45566666665556789999999866543 33588999999999998654
No 251
>PRK00536 speE spermidine synthase; Provisional
Probab=96.90 E-value=0.0053 Score=59.31 Aligned_cols=91 Identities=13% Similarity=0.072 Sum_probs=61.7
Q ss_pred CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc------Cc----eeeeccccccCCCCCCCcceee
Q 017983 219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR------GL----IGMYHDWCESFNTYPRTYDLLH 287 (363)
Q Consensus 219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R------gl----~~~~~d~~e~~lpfp~sFDlVh 287 (363)
++.++||=+|-|-|+.++++++++- .|+-++.- ++++.+++- ++ +..+. +.. -...++||+|+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEE
Confidence 4578999999999999999999873 45555554 456555541 11 11111 111 01137899999
Q ss_pred eccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
+...+. ......+.|.|+|||.++..-.
T Consensus 145 vDs~~~--------~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 145 CLQEPD--------IHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred EcCCCC--------hHHHHHHHHhcCCCcEEEECCC
Confidence 985433 3477899999999999998643
No 252
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=96.86 E-value=0.00044 Score=66.53 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=51.4
Q ss_pred cCCCCHHHHHHHHHcC--CCcee---------eecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEE
Q 017983 5 PKDEHEAQIQFALERG--IPAIL---------SVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFF 73 (363)
Q Consensus 5 p~D~~~~qvq~A~erg--~p~~~---------~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~ 73 (363)
--|.++.+|..|.|.- -|..- ...+++.+. ..||+|+|+.+++|..+ +..++.-+.+.|||||.+
T Consensus 116 GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~d-p~~~l~~l~~~lkP~G~l 191 (282)
T KOG1270|consen 116 GIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKD-PQEFLNCLSALLKPNGRL 191 (282)
T ss_pred eecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHHHHHHhC-HHHHHHHHHHHhCCCCce
Confidence 4589999999999882 11111 111233331 22999999999999764 778999999999999999
Q ss_pred EEEeC
Q 017983 74 IWSAT 78 (363)
Q Consensus 74 ~~s~~ 78 (363)
++++=
T Consensus 192 fitti 196 (282)
T KOG1270|consen 192 FITTI 196 (282)
T ss_pred Eeeeh
Confidence 99843
No 253
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.85 E-value=0.007 Score=57.96 Aligned_cols=126 Identities=11% Similarity=0.138 Sum_probs=72.4
Q ss_pred CCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHH----HhcCc---eeeeccccccCCC-------CCC
Q 017983 220 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSII----FDRGL---IGMYHDWCESFNT-------YPR 281 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a----~~Rgl---~~~~~d~~e~~lp-------fp~ 281 (363)
..++||.+|+++|.-+.+|+.. +.. |+.++.. +..++| .+-|+ +.+....+...|+ +.+
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~---v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGK---ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCE---EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 3579999999999877777642 223 3333443 344433 23343 3333222222232 236
Q ss_pred CcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC---------H-----HHH----HHHHH----HHHhCCc
Q 017983 282 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT---------L-----EMI----NKLKP----VLHSLQW 339 (363)
Q Consensus 282 sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~---------~-----~~~----~~i~~----l~~~l~W 339 (363)
+||+|+... ++......+....+.|||||.+++-+. . ... ..|++ +...=++
T Consensus 156 ~fD~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~ 229 (247)
T PLN02589 156 TFDFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRI 229 (247)
T ss_pred cccEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCE
Confidence 899999862 233456678888899999999877431 0 111 12223 3445556
Q ss_pred eeeee--cceEEEEEec
Q 017983 340 STNIY--HDQFLVGKKG 354 (363)
Q Consensus 340 ~~~~~--~~~~li~~K~ 354 (363)
...+- .+.+++++|+
T Consensus 230 ~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 230 EICMLPVGDGITLCRRI 246 (247)
T ss_pred EEEEEEeCCccEEEEEe
Confidence 55544 6788888875
No 254
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.84 E-value=0.004 Score=59.15 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=31.7
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR 263 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R 263 (363)
+..+|||+|||+|.++..|+++... ++++|.+ .+++.+.++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~~~ 70 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILRKL 70 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHHHH
Confidence 3469999999999999999987543 5666766 677766654
No 255
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.83 E-value=0.0034 Score=58.29 Aligned_cols=108 Identities=15% Similarity=0.186 Sum_probs=57.7
Q ss_pred hhccccchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhc--CCCeEEEEeecCCc----chHHHHHhc-Cc
Q 017983 193 EAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALID--QPLWVMNVVPIDAP----DTLSIIFDR-GL 265 (363)
Q Consensus 193 e~F~~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~--~~v~v~~v~~~d~s----~~L~~a~~R-gl 265 (363)
-+|...-..-+.++.+ . +. +..+||||-||.|.|+..++. ++..+ .+.|.. +.|....+. ++
T Consensus 82 vyfs~rl~~Er~Ri~~-~-----v~--~~e~VlD~faGIG~f~l~~ak~~~~~~V---~A~d~Np~a~~~L~~Ni~lNkv 150 (200)
T PF02475_consen 82 VYFSPRLSTERRRIAN-L-----VK--PGEVVLDMFAGIGPFSLPIAKHGKAKRV---YAVDLNPDAVEYLKENIRLNKV 150 (200)
T ss_dssp S---GGGHHHHHHHHT-C---------TT-EEEETT-TTTTTHHHHHHHT-SSEE---EEEES-HHHHHHHHHHHHHTT-
T ss_pred EEEccccHHHHHHHHh-c-----CC--cceEEEEccCCccHHHHHHhhhcCccEE---EEecCCHHHHHHHHHHHHHcCC
Confidence 3455554555555543 1 22 246999999999999999987 44443 344433 333332222 22
Q ss_pred ---eeeeccccccCCCCCCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEE
Q 017983 266 ---IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVL 319 (363)
Q Consensus 266 ---~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~li 319 (363)
+..++..|...++ ...||-|++..- . ....+|.+..+.+|+||.+.
T Consensus 151 ~~~i~~~~~D~~~~~~-~~~~drvim~lp-----~--~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 151 ENRIEVINGDAREFLP-EGKFDRVIMNLP-----E--SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TTTEEEEES-GGG----TT-EEEEEE--T-----S--SGGGGHHHHHHHEEEEEEEE
T ss_pred CCeEEEEcCCHHHhcC-ccccCEEEECCh-----H--HHHHHHHHHHHHhcCCcEEE
Confidence 4445555655444 699998877521 1 12348899999999999874
No 256
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.83 E-value=0.0015 Score=66.31 Aligned_cols=71 Identities=23% Similarity=0.365 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHH----cCCCc-eeeecccCCC--CCCCCCccEEEeCCcccccccCC------CchhhhhcccccCCeEE
Q 017983 7 DEHEAQIQFALE----RGIPA-ILSVIGTQKL--TFPDDAYDLIHCARCRVHWDAQG------GKPLLELNRILRPGGFF 73 (363)
Q Consensus 7 D~~~~qvq~A~e----rg~p~-~~~~~~~~~L--Pfpd~sFD~v~cs~~~~~~~~~~------~~~l~E~~RVLrPGG~~ 73 (363)
|++..++..|.+ +|++. .+...++..+ +|++++||.|++... .||+... ..+|.|+.|+|||||.+
T Consensus 153 EI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l 231 (390)
T PRK14121 153 EIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP-VPWDKKPHRRVISEDFLNEALRVLKPGGTL 231 (390)
T ss_pred ECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC-CCccccchhhccHHHHHHHHHHHcCCCcEE
Confidence 667667665544 46654 4455566654 689999999998643 5675322 36899999999999999
Q ss_pred EEEeC
Q 017983 74 IWSAT 78 (363)
Q Consensus 74 ~~s~~ 78 (363)
.+.+.
T Consensus 232 ~l~TD 236 (390)
T PRK14121 232 ELRTD 236 (390)
T ss_pred EEEEE
Confidence 99755
No 257
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.81 E-value=0.0018 Score=64.12 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHc-----C------CCceeeecc------cCCCCCCCCCccEEEeCCcccccccC---CCchhhhhcc
Q 017983 6 KDEHEAQIQFALER-----G------IPAILSVIG------TQKLTFPDDAYDLIHCARCRVHWDAQ---GGKPLLELNR 65 (363)
Q Consensus 6 ~D~~~~qvq~A~er-----g------~p~~~~~~~------~~~LPfpd~sFD~v~cs~~~~~~~~~---~~~~l~E~~R 65 (363)
-|+.+.-||+|++| + .++.+...+ ...++|+|-.||+|-|-.|+|.=-.. ...+|+-+.+
T Consensus 146 iDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~ 225 (389)
T KOG1975|consen 146 IDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAK 225 (389)
T ss_pred eehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHh
Confidence 37788888888877 1 356777776 34589999999999998887442221 2468999999
Q ss_pred cccCCeEEEEEeCCC
Q 017983 66 ILRPGGFFIWSATPV 80 (363)
Q Consensus 66 VLrPGG~~~~s~~~~ 80 (363)
.|||||+|+-+.|..
T Consensus 226 ~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 226 CLKPGGVFIGTIPDS 240 (389)
T ss_pred hcCCCcEEEEecCcH
Confidence 999999999999943
No 258
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.69 E-value=0.0037 Score=63.68 Aligned_cols=115 Identities=18% Similarity=0.226 Sum_probs=73.2
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCCCC-C---Ccceee
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNTYP-R---TYDLLH 287 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lpfp-~---sFDlVh 287 (363)
.++|||+=|-||+|+.+.+..|+. .|+.+|.| ..|+.|.+. |+ +..+...|-..+.+. + +||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 469999999999999998887762 35666888 677766654 33 122332233334443 3 999999
Q ss_pred ec---ccccc---ccccCCHHHHHHHHhHhccCCeEEEEEcCH------HHHHHHHHHHHhC
Q 017983 288 SS---FLLSD---VTQRCDIADVAVEMDRILRPGGYVLVQDTL------EMINKLKPVLHSL 337 (363)
Q Consensus 288 ~~---~~l~~---~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------~~~~~i~~l~~~l 337 (363)
.. +.-+- +.-..+..+++.+..++|+|||.++++... ..+..+.+-+..+
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~ 357 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAA 357 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhc
Confidence 74 11110 111123467899999999999999998642 3444444444443
No 259
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=96.67 E-value=0.0022 Score=62.41 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=49.8
Q ss_pred HHHHHHHHH----cCCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeCC
Q 017983 10 EAQIQFALE----RGIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSATP 79 (363)
Q Consensus 10 ~~qvq~A~e----rg~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~~ 79 (363)
+.+++.|++ .|+. +.+...+....++|. +|+|+++.++|+|.++. ..+|+++.|+|||||++++....
T Consensus 182 ~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 182 PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 456666654 3554 345555666667774 69999999999887542 46899999999999999998653
No 260
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.65 E-value=0.0081 Score=55.92 Aligned_cols=96 Identities=19% Similarity=0.264 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccc------cccC-------------------
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVH------WDAQ------------------- 55 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~------~~~~------------------- 55 (363)
-|.++.+++.|.+. |++ +.+...+... ++++++||+|+|.--.+. +..+
T Consensus 117 iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 195 (251)
T TIGR03534 117 VDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDF 195 (251)
T ss_pred EECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHH
Confidence 37788888888754 554 4555555544 678899999998431111 1100
Q ss_pred CCchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEecC
Q 017983 56 GGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVD 111 (363)
Q Consensus 56 ~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~ 111 (363)
...++.++.|+|+|||.+++.... . .-..+.++....+++.+..+.+
T Consensus 196 ~~~~i~~~~~~L~~gG~~~~~~~~---~------~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 196 YRRIIAQAPRLLKPGGWLLLEIGY---D------QGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred HHHHHHHHHHhcccCCEEEEEECc---c------HHHHHHHHHHhCCCCceEEEeC
Confidence 014678999999999999998651 1 1234566666677766554444
No 261
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.58 E-value=0.0027 Score=48.57 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHH---HcC--CCceeeecccCCCC-CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983 6 KDEHEAQIQFAL---ERG--IPAILSVIGTQKLT-FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 6 ~D~~~~qvq~A~---erg--~p~~~~~~~~~~LP-fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s 76 (363)
-|.++.+++.+. +.+ ....+...+....+ .+.+.||+|+|.....++......++..+.++|||||+++++
T Consensus 27 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 27 VDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 367888888776 222 22344444544443 367899999998877653444567999999999999999986
No 262
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.57 E-value=0.016 Score=54.86 Aligned_cols=96 Identities=20% Similarity=0.344 Sum_probs=60.4
Q ss_pred cCCCCCceEEEecccccHHHHHhhc----CC-CeEEEEeecCCcchHHHHHhcC-ceeeeccccccCCC--CC---CCcc
Q 017983 216 INWSSVRNVMDMNASYGGFAAALID----QP-LWVMNVVPIDAPDTLSIIFDRG-LIGMYHDWCESFNT--YP---RTYD 284 (363)
Q Consensus 216 i~~~~~r~VLDvGCG~G~faa~L~~----~~-v~v~~v~~~d~s~~L~~a~~Rg-l~~~~~d~~e~~lp--fp---~sFD 284 (363)
|.+| .+||-+|+.+|+....+.+ .| |.+....|....+.+.+|.+|- ++.++.| ++.| |. ...|
T Consensus 71 ik~g--skVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~D---Ar~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 71 IKPG--SKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILED---ARHPEKYRMLVEMVD 145 (229)
T ss_dssp --TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES----TTSGGGGTTTS--EE
T ss_pred CCCC--CEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeecc---CCChHHhhccccccc
Confidence 4444 5999999999998777765 22 2222222222225678899986 4667776 3455 33 6778
Q ss_pred eeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 285 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 285 lVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
+|++.-. .+...+-++.-....||+||+++|.
T Consensus 146 vI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 146 VIFQDVA-----QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp EEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEecCC-----ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 8887622 2334555788888999999999987
No 263
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.56 E-value=0.042 Score=51.68 Aligned_cols=135 Identities=17% Similarity=0.190 Sum_probs=77.4
Q ss_pred cchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHH--HhhcCCCeEEEEeecCCc----chHHHHHh-cCc--eee
Q 017983 198 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAA--ALIDQPLWVMNVVPIDAP----DTLSIIFD-RGL--IGM 268 (363)
Q Consensus 198 ~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa--~L~~~~v~v~~v~~~d~s----~~L~~a~~-Rgl--~~~ 268 (363)
..+.|.+.+-+.-.-...+... ..+++|+|+|.|-=+. ++...... |+-+|.. +.|+.+.. =|+ +.+
T Consensus 46 ~~e~~~rHilDSl~~~~~~~~~-~~~~~DIGSGaGfPGipLAI~~p~~~---vtLles~~Kk~~FL~~~~~eL~L~nv~i 121 (215)
T COG0357 46 PEELWQRHILDSLVLLPYLDGK-AKRVLDIGSGAGFPGIPLAIAFPDLK---VTLLESLGKKIAFLREVKKELGLENVEI 121 (215)
T ss_pred HHHHHHHHHHHHhhhhhccccc-CCEEEEeCCCCCCchhhHHHhccCCc---EEEEccCchHHHHHHHHHHHhCCCCeEE
Confidence 3477877665421100111111 3699999999994333 33333333 3344433 45654443 355 566
Q ss_pred eccccccCCCCCCC-cceeeeccccccccccCCHHHHHHHHhHhccCCeEEEE---EcCHHHHHHHHHHHHhCCceeeee
Q 017983 269 YHDWCESFNTYPRT-YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV---QDTLEMINKLKPVLHSLQWSTNIY 344 (363)
Q Consensus 269 ~~d~~e~~lpfp~s-FDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii---~D~~~~~~~i~~l~~~l~W~~~~~ 344 (363)
++..+|.+-+- .. ||+|.|. ++. .+..++.=....||+||+++. .-..+.+.++++-.....+.+...
T Consensus 122 ~~~RaE~~~~~-~~~~D~vtsR-Ava------~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 122 VHGRAEEFGQE-KKQYDVVTSR-AVA------SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred ehhhHhhcccc-cccCcEEEee-hcc------chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 77766653321 22 9999876 333 244466667789999998753 344556677777777777776554
No 264
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.56 E-value=0.013 Score=58.51 Aligned_cols=71 Identities=14% Similarity=0.064 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCccccccc----CCCchhhhhcccccCCeEEEEEe
Q 017983 6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA----QGGKPLLELNRILRPGGFFIWSA 77 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~----~~~~~l~E~~RVLrPGG~~~~s~ 77 (363)
-|+++.+++.|+++ ++...+...+. +...++.||+|+|+...|.... ....++.++.|.|||||.|++..
T Consensus 226 vDis~~Al~~A~~nl~~n~l~~~~~~~D~--~~~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 226 SDVSAAALESSRATLAANGLEGEVFASNV--FSDIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred EECCHHHHHHHHHHHHHcCCCCEEEEccc--ccccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 38899999888753 55555544443 3334689999999865533211 12478999999999999999976
Q ss_pred C
Q 017983 78 T 78 (363)
Q Consensus 78 ~ 78 (363)
.
T Consensus 304 n 304 (342)
T PRK09489 304 N 304 (342)
T ss_pred e
Confidence 5
No 265
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.54 E-value=0.0046 Score=57.38 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=34.1
Q ss_pred CCCCCCccEEEeCCcccccccCC-----------CchhhhhcccccCCeEEEEEeC
Q 017983 34 TFPDDAYDLIHCARCRVHWDAQG-----------GKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 34 Pfpd~sFD~v~cs~~~~~~~~~~-----------~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
++++++||+|+|+.+. +|..++ ..+|.++.|+|||||.|++...
T Consensus 112 ~~~~~~~D~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 112 RVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred HhCCCCCCEEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 3788999999997654 443221 2489999999999999999754
No 266
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=96.53 E-value=0.0035 Score=59.14 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCCh
Q 017983 6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDD 85 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~ 85 (363)
-|.|.+|+..|.+|...+.+...+.... -|++.+|+++++-++ ||..|....|.-..--|.|||+|++-.|.. +.
T Consensus 60 iDsS~~Mla~Aa~rlp~~~f~~aDl~~w-~p~~~~dllfaNAvl-qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN---~d 134 (257)
T COG4106 60 IDSSPAMLAKAAQRLPDATFEEADLRTW-KPEQPTDLLFANAVL-QWLPDHPELLPRLVSQLAPGGVLAVQMPDN---LD 134 (257)
T ss_pred ccCCHHHHHHHHHhCCCCceecccHhhc-CCCCccchhhhhhhh-hhccccHHHHHHHHHhhCCCceEEEECCCc---cC
Confidence 4899999999999998888887776554 367899999988554 897777789999999999999999999943 22
Q ss_pred hhHHHHHHHHHHHhhcceEEEEEecCCCceeEEEEecCCC-Chhc
Q 017983 86 RHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVS-YSCY 129 (363)
Q Consensus 86 e~~~~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~~-~~c~ 129 (363)
| ..-..|.+.+++.-|...... ..+.+++.- -+-|
T Consensus 135 e--psH~~mr~~A~~~p~~~~l~~-------~~~~r~~v~s~a~Y 170 (257)
T COG4106 135 E--PSHRLMRETADEAPFAQELGG-------RGLTRAPLPSPAAY 170 (257)
T ss_pred c--hhHHHHHHHHhcCchhhhhCc-------cccccCCCCCHHHH
Confidence 2 234578899988877543321 223577764 3444
No 267
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=96.46 E-value=0.0041 Score=58.07 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHH-HcCC----------------CceeeecccCCCCCC-CCCccEEEeCCcccccccC-CCchhhhhccc
Q 017983 6 KDEHEAQIQFAL-ERGI----------------PAILSVIGTQKLTFP-DDAYDLIHCARCRVHWDAQ-GGKPLLELNRI 66 (363)
Q Consensus 6 ~D~~~~qvq~A~-erg~----------------p~~~~~~~~~~LPfp-d~sFD~v~cs~~~~~~~~~-~~~~l~E~~RV 66 (363)
-|+|+..|+.|. +.|+ .+.+.+.|...++.. ...||.|.-+.+++|.+.+ ...++..+.+.
T Consensus 62 vD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~l 141 (213)
T TIGR03840 62 VELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLAL 141 (213)
T ss_pred EeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHH
Confidence 378888888753 4444 345567777666643 4679999988888887654 25689999999
Q ss_pred ccCCeEEEEE
Q 017983 67 LRPGGFFIWS 76 (363)
Q Consensus 67 LrPGG~~~~s 76 (363)
|||||++++.
T Consensus 142 LkpgG~~ll~ 151 (213)
T TIGR03840 142 LPPGARQLLI 151 (213)
T ss_pred cCCCCeEEEE
Confidence 9999975554
No 268
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.45 E-value=0.0021 Score=52.74 Aligned_cols=73 Identities=22% Similarity=0.362 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHHc----CC--CceeeecccCCCC--CCCCCccEEEeCCcccccccCC-------CchhhhhcccccCC
Q 017983 6 KDEHEAQIQFALER----GI--PAILSVIGTQKLT--FPDDAYDLIHCARCRVHWDAQG-------GKPLLELNRILRPG 70 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~--p~~~~~~~~~~LP--fpd~sFD~v~cs~~~~~~~~~~-------~~~l~E~~RVLrPG 70 (363)
-|+++..++.|+++ ++ ++.+.+.+...++ ++++.||+|+++-=......+. ..++.++.|+||||
T Consensus 29 vdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g 108 (117)
T PF13659_consen 29 VDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG 108 (117)
T ss_dssp EESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEE
T ss_pred EEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCC
Confidence 36778888888765 33 3677777766664 8999999999965333221111 25789999999999
Q ss_pred eEEEEEeC
Q 017983 71 GFFIWSAT 78 (363)
Q Consensus 71 G~~~~s~~ 78 (363)
|.+++..|
T Consensus 109 G~~~~~~~ 116 (117)
T PF13659_consen 109 GVLVFITP 116 (117)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEeC
Confidence 99999865
No 269
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.43 E-value=0.02 Score=53.87 Aligned_cols=112 Identities=17% Similarity=0.264 Sum_probs=75.5
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCceeeeccccccCCCC-C-CCcceeeeccccccccccC
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTY-P-RTYDLLHSSFLLSDVTQRC 299 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~lpf-p-~sFDlVh~~~~l~~~~~~~ 299 (363)
-++|||||=....+ .... ...+|+++|.... ..++ ...|+.+.-+|- + +.||+|.|+.||..++++.
T Consensus 53 lrlLEVGals~~N~--~s~~--~~fdvt~IDLns~-----~~~I--~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNA--CSTS--GWFDVTRIDLNSQ-----HPGI--LQQDFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCc--cccc--CceeeEEeecCCC-----CCCc--eeeccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 58999998744322 1111 1345777775521 1111 134544433553 3 8999999999999999887
Q ss_pred CHHHHHHHHhHhccCCeE-----EEEEcC------HH--HHHHHHHHHHhCCceeeee
Q 017983 300 DIADVAVEMDRILRPGGY-----VLVQDT------LE--MINKLKPVLHSLQWSTNIY 344 (363)
Q Consensus 300 ~~~~~L~Em~RVLRPGG~-----lii~D~------~~--~~~~i~~l~~~l~W~~~~~ 344 (363)
..-+.++-+.+.|||+|. ++|--. .. ..+.+..+..+|.......
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 778899999999999999 655422 11 2367889999999987665
No 270
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.43 E-value=0.0055 Score=62.19 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=58.1
Q ss_pred ceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCCCCcceeeeccccc
Q 017983 222 RNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYPRTYDLLHSSFLLS 293 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp~sFDlVh~~~~l~ 293 (363)
.+|||++||+|.++..++.. ++ -.|+.+|.+ +.++.+.+. ++ ..++...+...+.-.+.||+|+..= +
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 48999999999999998753 32 246677776 555444322 22 2234333332222146799999862 1
Q ss_pred cccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 294 DVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
.....+|....+.++|||.++++
T Consensus 135 -----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 22345777767889999999998
No 271
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.42 E-value=0.0076 Score=60.15 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=64.6
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHh--cCceeeeccccccCCCCCCCcceeeeccccccccc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFD--RGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ 297 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~--Rgl~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~ 297 (363)
.....+|+|.|.|..+..+..+--+ +..+-.|.+.-++.+.. .|+-.+..|-... . -+-|+|++-+++|||++
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~-ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~---P~~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPH-IKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-T---PKGDAIWMKWILHDWTD 251 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCC-CceeecCHHHHHhhhhhhcCCcceeccccccc-C---CCcCeEEEEeecccCCh
Confidence 3578999999999998888774222 12222233322222221 3332233332111 2 34459999999999987
Q ss_pred cCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 298 RCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 298 ~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
. +..++|+-...-|+|||.+++-|.
T Consensus 252 e-dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 252 E-DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred H-HHHHHHHHHHHhCCCCCEEEEEec
Confidence 4 678999999999999999999875
No 272
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.42 E-value=0.0074 Score=55.96 Aligned_cols=65 Identities=15% Similarity=0.066 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 7 DEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
|.++.+++.|+++ |+. +.+...++...+++++.||+|++.....+ ...++.+.|||||.|++...
T Consensus 108 E~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 108 ERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred eCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEEEc
Confidence 6788889888875 554 55566666666677899999998754422 34567789999999998643
No 273
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.40 E-value=0.075 Score=53.38 Aligned_cols=92 Identities=20% Similarity=0.249 Sum_probs=59.2
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCceeeeccccccCCCCCCCcceeeeccccccccccC
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRC 299 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~ 299 (363)
+..++||+||++|+|+-.|.+++.. |+++|...|-+...+.+.+..+....-...|-++.+|+++|..+-.
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~---V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~------ 281 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMF---VTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK------ 281 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCE---EEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC------
Confidence 3469999999999999999999864 5666755554444555544333221112233248899999985533
Q ss_pred CHHHHHHHHhHhccCC--eEEEEE
Q 017983 300 DIADVAVEMDRILRPG--GYVLVQ 321 (363)
Q Consensus 300 ~~~~~L~Em~RVLRPG--G~lii~ 321 (363)
+..++.=|.+-|..| +.+|+.
T Consensus 282 -P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 282 -PARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred -HHHHHHHHHHHHhcCcccEEEEE
Confidence 345666666677665 456665
No 274
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.39 E-value=0.00099 Score=64.76 Aligned_cols=79 Identities=22% Similarity=0.213 Sum_probs=61.6
Q ss_pred CCCcCCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccC--CCchhhhhcccccCCeEEEEEeCC
Q 017983 2 SLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ--GGKPLLELNRILRPGGFFIWSATP 79 (363)
Q Consensus 2 s~ap~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~--~~~~l~E~~RVLrPGG~~~~s~~~ 79 (363)
++.+-|.+...+.-|...|.. .+.+.++-.+||++.+||.++..-+.|||... ...++.|+.|+|||||...+-+..
T Consensus 67 ~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 67 LIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred eeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 355667777777777555532 56677899999999999999998888888542 357999999999999998777664
Q ss_pred CC
Q 017983 80 VY 81 (363)
Q Consensus 80 ~~ 81 (363)
.+
T Consensus 146 ~~ 147 (293)
T KOG1331|consen 146 LE 147 (293)
T ss_pred hh
Confidence 44
No 275
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.38 E-value=0.013 Score=54.60 Aligned_cols=119 Identities=13% Similarity=0.247 Sum_probs=73.0
Q ss_pred CCcCCCCHHHH----HHHHHcCCCceee--ecccCCCC--------CCCCCccEEEeCCcccccccC--CCchhhhhccc
Q 017983 3 LAPKDEHEAQI----QFALERGIPAILS--VIGTQKLT--------FPDDAYDLIHCARCRVHWDAQ--GGKPLLELNRI 66 (363)
Q Consensus 3 ~ap~D~~~~qv----q~A~erg~p~~~~--~~~~~~LP--------fpd~sFD~v~cs~~~~~~~~~--~~~~l~E~~RV 66 (363)
+-|.|..+... +-+.+.|.+++.. .+|+.+-+ +..++||+|+|.= .+|...- -..++.++.++
T Consensus 52 WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N-~lHI~p~~~~~~lf~~a~~~ 130 (204)
T PF06080_consen 52 WQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCIN-MLHISPWSAVEGLFAGAARL 130 (204)
T ss_pred EcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeeehh-HHHhcCHHHHHHHHHHHHHh
Confidence 44667665553 1233445543332 23333332 2356999999963 3444321 24689999999
Q ss_pred ccCCeEEEEEeCCCCC--CChh-hHHH---------------HHHHHHHHhhcceEEEEEecCCCceeEEEEec
Q 017983 67 LRPGGFFIWSATPVYR--HDDR-HRSV---------------WNAMVNLTESMCWKAVARSVDSNRIGFVIYQK 122 (363)
Q Consensus 67 LrPGG~~~~s~~~~~~--~~~e-~~~~---------------~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k 122 (363)
|+|||.|++-+|-.+. ..++ +.+. .+.|+.++..-+.++.....=.....+.||+|
T Consensus 131 L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 131 LKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 9999999999986552 1112 1111 35799999999999887653222246788887
No 276
>PRK14967 putative methyltransferase; Provisional
Probab=96.37 E-value=0.0057 Score=56.85 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccC--------------------CCchhh
Q 017983 6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ--------------------GGKPLL 61 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~--------------------~~~~l~ 61 (363)
-|.++.+++.|+++ |+.+.+...+... ++++++||+|+|..-.++-... ...++.
T Consensus 65 vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 143 (223)
T PRK14967 65 VDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCD 143 (223)
T ss_pred EECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHH
Confidence 37888888877653 5555555555543 4678899999996322111000 013678
Q ss_pred hhcccccCCeEEEEEeC
Q 017983 62 ELNRILRPGGFFIWSAT 78 (363)
Q Consensus 62 E~~RVLrPGG~~~~s~~ 78 (363)
++.|+|||||.+++..+
T Consensus 144 ~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 144 AAPALLAPGGSLLLVQS 160 (223)
T ss_pred HHHHhcCCCcEEEEEEe
Confidence 89999999999998755
No 277
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=96.37 E-value=0.0084 Score=58.76 Aligned_cols=63 Identities=11% Similarity=0.166 Sum_probs=43.8
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----C---ceeeeccccccCCCCC-CCcceeeec
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----G---LIGMYHDWCESFNTYP-RTYDLLHSS 289 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----g---l~~~~~d~~e~~lpfp-~sFDlVh~~ 289 (363)
..+|||+|||+|.++..|++.+.. |+++|.+ +|++.+.++ + -+.+++.. .+.++ ..||.|+++
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~---V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~D---al~~~~~~~d~VvaN 108 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKK---VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGD---ALKTEFPYFDVCVAN 108 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCc---EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECC---HhhhcccccCEEEec
Confidence 458999999999999999886533 5677777 677766653 2 13344432 34455 679998876
No 278
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.36 E-value=0.0096 Score=54.49 Aligned_cols=96 Identities=6% Similarity=-0.013 Sum_probs=55.1
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCC-C--CC-Ccceeeec
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT-Y--PR-TYDLLHSS 289 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lp-f--p~-sFDlVh~~ 289 (363)
.+|||++||+|.++.+++.++.. .|+.+|.+ ..++.+.+- ++ +.++...+...+. + .. .||+|+..
T Consensus 51 ~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 58999999999999999998763 35666766 444433321 22 2223222222222 2 22 47888875
Q ss_pred cccccccccCCHHHHHHHH--hHhccCCeEEEEEcC
Q 017983 290 FLLSDVTQRCDIADVAVEM--DRILRPGGYVLVQDT 323 (363)
Q Consensus 290 ~~l~~~~~~~~~~~~L~Em--~RVLRPGG~lii~D~ 323 (363)
==+. . .....++.-+ ..+|++||.+++...
T Consensus 129 PPy~---~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFF---N-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCC---C-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 2221 1 1233344333 457999998887644
No 279
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=0.047 Score=52.09 Aligned_cols=122 Identities=15% Similarity=0.244 Sum_probs=81.9
Q ss_pred ccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeecc-ccccCCC--CCCCcceee
Q 017983 213 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHD-WCESFNT--YPRTYDLLH 287 (363)
Q Consensus 213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d-~~e~~lp--fp~sFDlVh 287 (363)
.+.+.. ..+++||+|+-||||.-.|.++++. -|.++|.. ++|.--..... +-++.. .....-| |..-.|+++
T Consensus 73 ~F~l~~-k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v 149 (245)
T COG1189 73 EFELDV-KGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIV 149 (245)
T ss_pred hcCcCC-CCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEE
Confidence 344443 3589999999999999999998764 36777776 66654433332 111111 0000111 124568999
Q ss_pred eccccccccccCCHHHHHHHHhHhccCCeEEEEEc----------------------CHHHHHHHHHHHHhCCceeee
Q 017983 288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD----------------------TLEMINKLKPVLHSLQWSTNI 343 (363)
Q Consensus 288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D----------------------~~~~~~~i~~l~~~l~W~~~~ 343 (363)
|.-.|.. +..+|-.+..+|+|+|.++..- ...++.++.+.+....|.+.-
T Consensus 150 ~DvSFIS------L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~g 221 (245)
T COG1189 150 IDVSFIS------LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKG 221 (245)
T ss_pred EEeehhh------HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEee
Confidence 9877774 3569999999999999988752 134678899999999998644
No 280
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.32 E-value=0.014 Score=55.38 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHcCCCceeeecc-cCCCCCCCCCccEEEeCCcccccccC-------CC----chhhhhcccccCCeEE
Q 017983 6 KDEHEAQIQFALERGIPAILSVIG-TQKLTFPDDAYDLIHCARCRVHWDAQ-------GG----KPLLELNRILRPGGFF 73 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~p~~~~~~~-~~~LPfpd~sFD~v~cs~~~~~~~~~-------~~----~~l~E~~RVLrPGG~~ 73 (363)
-|+|..|+..|.||-+...+...+ .+.|||+.++||-|++- .++.|.-+ +. .|+.-++.+|++|+..
T Consensus 78 vDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISI-SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~ra 156 (270)
T KOG1541|consen 78 VDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISI-SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARA 156 (270)
T ss_pred ecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEe-eeeeeecccCccccChHHHHHHHhhhhhhhhccCcee
Confidence 489999999999987664444444 38999999999999863 44577322 11 3677799999999999
Q ss_pred EEEeCC
Q 017983 74 IWSATP 79 (363)
Q Consensus 74 ~~s~~~ 79 (363)
++--.|
T Consensus 157 V~QfYp 162 (270)
T KOG1541|consen 157 VLQFYP 162 (270)
T ss_pred EEEecc
Confidence 998554
No 281
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.30 E-value=0.0062 Score=62.43 Aligned_cols=77 Identities=19% Similarity=0.400 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHc----CCCceeeecccCCCC--CCCCCccEEE----eCCcc-------cccccCC----------Cc
Q 017983 6 KDEHEAQIQFALER----GIPAILSVIGTQKLT--FPDDAYDLIH----CARCR-------VHWDAQG----------GK 58 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LP--fpd~sFD~v~----cs~~~-------~~~~~~~----------~~ 58 (363)
-|.++.+++.++++ |+.+.+...++..++ ++.++||.|+ |+... +.|.... ..
T Consensus 274 ~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~ 353 (427)
T PRK10901 274 LDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSE 353 (427)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHH
Confidence 48888888888655 666666777777664 4678999999 44221 1122111 25
Q ss_pred hhhhhcccccCCeEEEEEeCCCCC
Q 017983 59 PLLELNRILRPGGFFIWSATPVYR 82 (363)
Q Consensus 59 ~l~E~~RVLrPGG~~~~s~~~~~~ 82 (363)
+|.++.++|||||++++|+-.++.
T Consensus 354 iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 354 ILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred HHHHHHHhcCCCCEEEEEeCCCCh
Confidence 789999999999999999865543
No 282
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.30 E-value=0.0093 Score=61.25 Aligned_cols=76 Identities=17% Similarity=0.287 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeecccCCCC----CCCCCccEEEe----CC-cccccccC----------------
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGTQKLT----FPDDAYDLIHC----AR-CRVHWDAQ---------------- 55 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LP----fpd~sFD~v~c----s~-~~~~~~~~---------------- 55 (363)
-|.++..++.++++ |+. +.+...++..++ +.+++||.|++ |- ..++-..+
T Consensus 283 ~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~ 362 (434)
T PRK14901 283 VDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPL 362 (434)
T ss_pred EcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHH
Confidence 48888888877654 665 466667777776 66789999995 32 11111111
Q ss_pred CCchhhhhcccccCCeEEEEEeCCCC
Q 017983 56 GGKPLLELNRILRPGGFFIWSATPVY 81 (363)
Q Consensus 56 ~~~~l~E~~RVLrPGG~~~~s~~~~~ 81 (363)
....|.++.++|||||++++|+-.++
T Consensus 363 Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 363 QAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 13578999999999999999987655
No 283
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.29 E-value=0.007 Score=47.65 Aligned_cols=72 Identities=28% Similarity=0.355 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHcCCC-----ceeeecccCC--CCCCC-CCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983 6 KDEHEAQIQFALERGIP-----AILSVIGTQK--LTFPD-DAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA 77 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~p-----~~~~~~~~~~--LPfpd-~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~ 77 (363)
-|.+..++..+..+... +.....+... +||.+ ..||++ ++.+..++.. ....+.++.|+|+|||.++++.
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 78 VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLHLLP-PAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeehhcCC-HHHHHHHHHHhcCCCcEEEEEe
Confidence 37788777776555421 2445555544 89998 599999 8777766654 4689999999999999999986
Q ss_pred CC
Q 017983 78 TP 79 (363)
Q Consensus 78 ~~ 79 (363)
..
T Consensus 156 ~~ 157 (257)
T COG0500 156 LL 157 (257)
T ss_pred cc
Confidence 63
No 284
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.27 E-value=0.011 Score=59.26 Aligned_cols=106 Identities=10% Similarity=0.198 Sum_probs=63.2
Q ss_pred eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC-------CC--------
Q 017983 223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT-------YP-------- 280 (363)
Q Consensus 223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp-------fp-------- 280 (363)
+|||++||+|.|+..|++... .|+++|.+ ++++.+.+. |+ +.++....+..++ ++
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 599999999999999987643 47777887 788766654 22 2222222222121 10
Q ss_pred -CCcceeeeccccccccccCCH-HHHHHHHhHhccCCeEEEEEcCHH-HHHHHHHHHHhCCceee
Q 017983 281 -RTYDLLHSSFLLSDVTQRCDI-ADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTN 342 (363)
Q Consensus 281 -~sFDlVh~~~~l~~~~~~~~~-~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~ 342 (363)
..||+|+.. |.+.++ ..++.- +++|++.++|+=... .-..++.|.++ |++.
T Consensus 277 ~~~~d~v~lD------PPR~G~~~~~l~~---l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~ 330 (353)
T TIGR02143 277 SYNCSTIFVD------PPRAGLDPDTCKL---VQAYERILYISCNPETLKANLEQLSET--HRVE 330 (353)
T ss_pred cCCCCEEEEC------CCCCCCcHHHHHH---HHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEE
Confidence 127887765 223332 334444 445899999985554 44556666544 6543
No 285
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.26 E-value=0.0046 Score=60.78 Aligned_cols=82 Identities=20% Similarity=0.146 Sum_probs=53.1
Q ss_pred hhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceeeeccccccCCCCC-C--
Q 017983 210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYP-R-- 281 (363)
Q Consensus 210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~~~d~~e~~lpfp-~-- 281 (363)
.++.|.+.++ ..++|++||.|+++.++++..-....|++.|.. .+++.+.++- -+..+++.......+. .
T Consensus 11 vl~~L~~~pg--~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 11 VVDALAIKPD--GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred HHHhhCCCCC--CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCC
Confidence 3444544443 499999999999999999763112347888988 8998887652 2334444332222222 2
Q ss_pred -Ccceeeeccccc
Q 017983 282 -TYDLLHSSFLLS 293 (363)
Q Consensus 282 -sFDlVh~~~~l~ 293 (363)
+||.|++....+
T Consensus 89 ~~vDgIl~DLGvS 101 (296)
T PRK00050 89 GKVDGILLDLGVS 101 (296)
T ss_pred CccCEEEECCCcc
Confidence 899999876555
No 286
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.24 E-value=0.018 Score=57.58 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=70.8
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcC----c---eeeeccccccCCCCCCCcceeeecccc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRG----L---IGMYHDWCESFNTYPRTYDLLHSSFLL 292 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rg----l---~~~~~d~~e~~lpfp~sFDlVh~~~~l 292 (363)
..+.|||+|||.|.+.-.-+..|+. .|.++.+|+|.+.|+.-- + |.++-.--| ....|...|++++.-+-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiE-dieLPEk~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAK--KVYAVEASEMAQYARKLVASNNLADRITVIPGKIE-DIELPEKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcc--eEEEEehhHHHHHHHHHHhcCCccceEEEccCccc-cccCchhccEEEeccch
Confidence 3579999999999754333333322 356677778887665421 1 223222112 25678899999875332
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEE-------cCHHHHHHHHHHHHhCCcee
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQ-------DTLEMINKLKPVLHSLQWST 341 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~-------D~~~~~~~i~~l~~~l~W~~ 341 (363)
-.+-+. .+...-.-.+|-|+|.|..+=+ ...+....++...+++-|--
T Consensus 254 ~mL~NE-RMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQ 308 (517)
T KOG1500|consen 254 YMLVNE-RMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQ 308 (517)
T ss_pred hhhhhH-HHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhh
Confidence 222232 2333333456999999986533 34566677888888888853
No 287
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.21 E-value=0.012 Score=60.39 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHc----CCCcee--eecccCCCCC--CCCCccEEEe----CC-ccc-c-----cccC----------C
Q 017983 6 KDEHEAQIQFALER----GIPAIL--SVIGTQKLTF--PDDAYDLIHC----AR-CRV-H-----WDAQ----------G 56 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p~~~--~~~~~~~LPf--pd~sFD~v~c----s~-~~~-~-----~~~~----------~ 56 (363)
-|.++..++.+.++ |+.+.+ ...++..+++ ++++||.|++ |. ... + |... .
T Consensus 268 ~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ 347 (426)
T TIGR00563 268 LDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQ 347 (426)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHH
Confidence 47888888777655 666433 3334444555 6789999985 32 111 1 1111 1
Q ss_pred CchhhhhcccccCCeEEEEEeCCCC
Q 017983 57 GKPLLELNRILRPGGFFIWSATPVY 81 (363)
Q Consensus 57 ~~~l~E~~RVLrPGG~~~~s~~~~~ 81 (363)
..+|.++.|+|||||+|++|+-.+.
T Consensus 348 ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 348 SEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 3589999999999999999977554
No 288
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=96.20 E-value=0.0029 Score=58.35 Aligned_cols=68 Identities=22% Similarity=0.358 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHcC----C--CceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEE
Q 017983 6 KDEHEAQIQFALERG----I--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 6 ~D~~~~qvq~A~erg----~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s 76 (363)
-|.++.+++.|+++. . .+.+.+.+.+.++ ++||+|+++..++|++. +...++.++.|++++|+++.++
T Consensus 83 vD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 83 VDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 388999999998872 2 3556666677766 89999999988888753 3457899999999988877765
No 289
>PRK04266 fibrillarin; Provisional
Probab=96.20 E-value=0.0061 Score=57.51 Aligned_cols=98 Identities=11% Similarity=0.134 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHc--CCC-ceeeecccCC----CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983 7 DEHEAQIQFALER--GIP-AILSVIGTQK----LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP 79 (363)
Q Consensus 7 D~~~~qvq~A~er--g~p-~~~~~~~~~~----LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~ 79 (363)
|.++.+++.+.++ ..+ +.+...++.. .+++ .+||+|++.... +|. ...+|.|+.|+|||||+|+++.+-
T Consensus 103 D~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~~~-p~~--~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 103 EFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDVAQ-PNQ--AEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred ECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECCCC-hhH--HHHHHHHHHHhcCCCcEEEEEEec
Confidence 7888777754333 112 3444445432 2334 569999875321 221 134689999999999999997442
Q ss_pred --CCCCChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983 80 --VYRHDDRHRSVWNAMVNLTESMCWKAVARS 109 (363)
Q Consensus 80 --~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~ 109 (363)
+-...++ ....+......+..+.+.+...
T Consensus 179 ~~~d~~~~~-~~~~~~~~~~l~~aGF~~i~~~ 209 (226)
T PRK04266 179 RSIDVTKDP-KEIFKEEIRKLEEGGFEILEVV 209 (226)
T ss_pred ccccCcCCH-HHHHHHHHHHHHHcCCeEEEEE
Confidence 1111111 1222333355555566666543
No 290
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.19 E-value=0.0047 Score=56.03 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=64.4
Q ss_pred CCceEEEecccccHHHHHhh--cCCCe------EEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CC
Q 017983 220 SVRNVMDMNASYGGFAAALI--DQPLW------VMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RT 282 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~--~~~v~------v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~s 282 (363)
....|||-=||+|++..+-+ ..++. ...+.++|.. +++..+.+. |+ +.... +....+|++ ++
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~-~D~~~l~~~~~~ 106 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ-WDARELPLPDGS 106 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE---GGGGGGTTSB
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe-cchhhcccccCC
Confidence 34689999999999874432 22222 1125677877 677655433 32 23332 222347766 99
Q ss_pred cceeeecccccc-ccc----cCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeee
Q 017983 283 YDLLHSSFLLSD-VTQ----RCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI 343 (363)
Q Consensus 283 FDlVh~~~~l~~-~~~----~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~ 343 (363)
+|.|+++-=+-. +.. ..-...++.|+.|+|+|...+++..... +++.+....|+...
T Consensus 107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~----~~~~~~~~~~~~~~ 168 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNRE----LEKALGLKGWRKRK 168 (179)
T ss_dssp SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCC----HHHHHTSTTSEEEE
T ss_pred CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH----HHHHhcchhhceEE
Confidence 999999721110 000 1113567899999999955555555433 34444444665443
No 291
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=96.18 E-value=0.022 Score=56.58 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=63.4
Q ss_pred CCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHh---c--Cc---eeeec-ccccc-C--CCCC-CCc
Q 017983 219 SSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFD---R--GL---IGMYH-DWCES-F--NTYP-RTY 283 (363)
Q Consensus 219 ~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~---R--gl---~~~~~-d~~e~-~--lpfp-~sF 283 (363)
+...+|||||||+|..+..|+.+ ..| .++++|.+ ..++.|.+ + ++ +.+.+ ..... + +..+ ..|
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~--~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGW--RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCC--EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCce
Confidence 44578999999999888777653 223 46777776 55554432 2 22 22221 10000 1 1134 789
Q ss_pred ceeeeccccccccccCC----HHHHHHH----------------HhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeee
Q 017983 284 DLLHSSFLLSDVTQRCD----IADVAVE----------------MDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI 343 (363)
Q Consensus 284 DlVh~~~~l~~~~~~~~----~~~~L~E----------------m~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~ 343 (363)
|+|+|+==|+. .... -.+-.+. ..+.+-+||.+.+... ++.+-..+++...|-..+
T Consensus 191 DlivcNPPf~~--s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~--mi~eS~~~~~~~gwftsm 266 (321)
T PRK11727 191 DATLCNPPFHA--SAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKR--MIEESKAFAKQVLWFTSL 266 (321)
T ss_pred EEEEeCCCCcC--cchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehH--hhHHHHHHHhhCcEEEEE
Confidence 99999832221 1000 0011111 1234557888766544 334446777777776555
Q ss_pred e
Q 017983 344 Y 344 (363)
Q Consensus 344 ~ 344 (363)
.
T Consensus 267 v 267 (321)
T PRK11727 267 V 267 (321)
T ss_pred e
Confidence 3
No 292
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.17 E-value=0.0059 Score=60.14 Aligned_cols=74 Identities=20% Similarity=0.227 Sum_probs=57.1
Q ss_pred CCcCCCCHHHHHHHHHc-CCCceeee--cccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 3 LAPKDEHEAQIQFALER-GIPAILSV--IGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 3 ~ap~D~~~~qvq~A~er-g~p~~~~~--~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
|-|....-.|-+++.+- |....... ++.+.||. .++||+|+|.-++.|-. ++-..|.++...|||||.|++-+-
T Consensus 144 iDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr-~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 144 IDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRR-SPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred ECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhccC-CHHHHHHHHHHhhCCCCEEEEEEe
Confidence 44556666777777655 44443333 57999999 89999999999998855 477899999999999999998754
No 293
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.15 E-value=0.0025 Score=62.33 Aligned_cols=47 Identities=17% Similarity=0.410 Sum_probs=38.8
Q ss_pred CCCCC-CCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeC
Q 017983 32 KLTFP-DDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 32 ~LPfp-d~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
..||| .+.||+|+|.-+++|+... ..+++..+.+.|+|||+|++...
T Consensus 215 ~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 215 AKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred CCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 33554 6899999999999998643 46899999999999999988755
No 294
>PRK14968 putative methyltransferase; Provisional
Probab=96.13 E-value=0.047 Score=48.28 Aligned_cols=92 Identities=17% Similarity=0.233 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHc----CCC---ceeeecccCCCCCCCCCccEEEeCCccccccc----------------C----CCch
Q 017983 7 DEHEAQIQFALER----GIP---AILSVIGTQKLTFPDDAYDLIHCARCRVHWDA----------------Q----GGKP 59 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p---~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~----------------~----~~~~ 59 (363)
|.++.+++.|+++ +.. +.+...+... ++++++||+|+++.-..+... + ...+
T Consensus 52 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (188)
T PRK14968 52 DINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRF 130 (188)
T ss_pred ECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHH
Confidence 7888888888654 333 4444444433 567779999998643222100 0 1236
Q ss_pred hhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEE
Q 017983 60 LLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVA 107 (363)
Q Consensus 60 l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~ 107 (363)
+.++.|+|||||.+++..+... .. ..+..+.....++...
T Consensus 131 i~~~~~~Lk~gG~~~~~~~~~~--~~------~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 131 LDEVGRYLKPGGRILLLQSSLT--GE------DEVLEYLEKLGFEAEV 170 (188)
T ss_pred HHHHHHhcCCCeEEEEEEcccC--CH------HHHHHHHHHCCCeeee
Confidence 8999999999999988766321 11 2455566666665544
No 295
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.12 E-value=0.021 Score=56.76 Aligned_cols=98 Identities=10% Similarity=0.084 Sum_probs=59.3
Q ss_pred ceEEEecccccHHHH----HhhcCCCeEEEEeecCCc-chHHHHHhcCc---------eeeeccccc--cCCCC---CCC
Q 017983 222 RNVMDMNASYGGFAA----ALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---------IGMYHDWCE--SFNTY---PRT 282 (363)
Q Consensus 222 r~VLDvGCG~G~faa----~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl---------~~~~~d~~e--~~lpf---p~s 282 (363)
..++|+|||.|.=.. +|...+. ....+|+|.| ++|+.+.++-. .++.+|+.. ..+|= +..
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 489999999997443 3432221 2357999999 78876655422 122222211 11221 234
Q ss_pred cceeeec-cccccccccCCHHHHHHHHhH-hccCCeEEEEE
Q 017983 283 YDLLHSS-FLLSDVTQRCDIADVAVEMDR-ILRPGGYVLVQ 321 (363)
Q Consensus 283 FDlVh~~-~~l~~~~~~~~~~~~L~Em~R-VLRPGG~lii~ 321 (363)
..++..- ..+..+.. .....+|.++.+ .|+|||.++|.
T Consensus 157 ~r~~~flGSsiGNf~~-~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 157 PTTILWLGSSIGNFSR-PEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred ccEEEEeCccccCCCH-HHHHHHHHHHHHhhCCCCCEEEEe
Confidence 5555443 35555432 345689999999 99999999996
No 296
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.07 E-value=0.0073 Score=56.59 Aligned_cols=70 Identities=13% Similarity=0.046 Sum_probs=50.8
Q ss_pred CCCCHHHHHHH-HHcCCC----------------ceeeecccCCCCCC-CCCccEEEeCCcccccccC-CCchhhhhccc
Q 017983 6 KDEHEAQIQFA-LERGIP----------------AILSVIGTQKLTFP-DDAYDLIHCARCRVHWDAQ-GGKPLLELNRI 66 (363)
Q Consensus 6 ~D~~~~qvq~A-~erg~p----------------~~~~~~~~~~LPfp-d~sFD~v~cs~~~~~~~~~-~~~~l~E~~RV 66 (363)
-|.|+..|+.| .++|++ +.+.+.|...++.. ...||+|.-+.+++|.+.. ...++..+.++
T Consensus 65 vD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~l 144 (218)
T PRK13255 65 VELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAAL 144 (218)
T ss_pred EccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHH
Confidence 48888888875 456654 34456666666443 3689999988888887643 35799999999
Q ss_pred ccCCeEEEE
Q 017983 67 LRPGGFFIW 75 (363)
Q Consensus 67 LrPGG~~~~ 75 (363)
|||||++++
T Consensus 145 L~pgG~~~l 153 (218)
T PRK13255 145 LPAGCRGLL 153 (218)
T ss_pred cCCCCeEEE
Confidence 999996444
No 297
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.94 E-value=0.004 Score=62.88 Aligned_cols=49 Identities=31% Similarity=0.493 Sum_probs=41.4
Q ss_pred ecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983 27 VIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 27 ~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s 76 (363)
..+....||+|++||.|-+..+..|-+. ...++.|+.|||+|||+++..
T Consensus 166 ~~~~~~~~fedn~fd~v~~ld~~~~~~~-~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 166 VADFGKMPFEDNTFDGVRFLEVVCHAPD-LEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred hhhhhcCCCCccccCcEEEEeecccCCc-HHHHHHHHhcccCCCceEEeH
Confidence 3346678999999999999887777554 568999999999999999875
No 298
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.90 E-value=0.0088 Score=55.00 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHc----CC--CceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEE
Q 017983 6 KDEHEAQIQFALER----GI--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFI 74 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~ 74 (363)
-|.++.+++.|+++ +. .+.+...+ +++++++||+|+|+.+++||++. ...++.++.|++++|+.+.
T Consensus 91 ~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 91 SDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred EECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 47899999999886 22 12233333 67778999999999999888743 2467888888776555443
No 299
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.88 E-value=0.022 Score=57.26 Aligned_cols=107 Identities=10% Similarity=0.204 Sum_probs=63.2
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC-C--------------
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT-Y-------------- 279 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp-f-------------- 279 (363)
.+|||++||+|.|+.+|+.... .|+++|.+ .+++.+.+. |+ +.++....+..++ +
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 3699999999999999987533 46777877 777666553 32 2223222222221 1
Q ss_pred -CCCcceeeeccccccccccCCH-HHHHHHHhHhccCCeEEEEEcCHHHH-HHHHHHHHhCCceee
Q 017983 280 -PRTYDLLHSSFLLSDVTQRCDI-ADVAVEMDRILRPGGYVLVQDTLEMI-NKLKPVLHSLQWSTN 342 (363)
Q Consensus 280 -p~sFDlVh~~~~l~~~~~~~~~-~~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~l~~~l~W~~~ 342 (363)
...||+|+.. . .+.++ +.++.-+ ++|++.++++=....+ ..++.|.+ .|++.
T Consensus 285 ~~~~~D~v~lD---P---PR~G~~~~~l~~l---~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~ 339 (362)
T PRK05031 285 KSYNFSTIFVD---P---PRAGLDDETLKLV---QAYERILYISCNPETLCENLETLSQ--THKVE 339 (362)
T ss_pred cCCCCCEEEEC---C---CCCCCcHHHHHHH---HccCCEEEEEeCHHHHHHHHHHHcC--CcEEE
Confidence 1258998875 2 22232 3344444 3489999998665543 44666654 45543
No 300
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.88 E-value=0.018 Score=54.67 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=56.0
Q ss_pred CceEEEecccccHHHHHh----hcCC-CeEEEEeecCCcchHHHHHhcCc---eeeeccccccCCC-----CC-CCccee
Q 017983 221 VRNVMDMNASYGGFAAAL----IDQP-LWVMNVVPIDAPDTLSIIFDRGL---IGMYHDWCESFNT-----YP-RTYDLL 286 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L----~~~~-v~v~~v~~~d~s~~L~~a~~Rgl---~~~~~d~~e~~lp-----fp-~sFDlV 286 (363)
.+++||+|.=||.-+.+. -+.+ +..+++.+....-..+.....|. +...+.-+...|+ +. +|||++
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 469999998777533333 2332 22333322222223455555564 3333322211222 45 999999
Q ss_pred eeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
+.. |+. .+......+.-|.||+||.+++-.
T Consensus 154 FvD----adK--~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 154 FVD----ADK--DNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEc----cch--HHHHHHHHHHHhhcccccEEEEec
Confidence 864 543 345589999999999999888753
No 301
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.86 E-value=0.071 Score=50.48 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHc---CC--CceeeecccCCCCCCCCCccEEEeCCccccc------ccC-------------------
Q 017983 6 KDEHEAQIQFALER---GI--PAILSVIGTQKLTFPDDAYDLIHCARCRVHW------DAQ------------------- 55 (363)
Q Consensus 6 ~D~~~~qvq~A~er---g~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~------~~~------------------- 55 (363)
-|+++.+++.|.+. +. .+.+...+.. -++++++||+|+|..-.+.- ..+
T Consensus 138 iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~-~~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~ 216 (275)
T PRK09328 138 VDISPEALAVARRNAKHGLGARVEFLQGDWF-EPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDF 216 (275)
T ss_pred EECCHHHHHHHHHHHHhCCCCcEEEEEcccc-CcCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHH
Confidence 47899999999876 22 2444444442 24557899999985211110 000
Q ss_pred CCchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEecC
Q 017983 56 GGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVD 111 (363)
Q Consensus 56 ~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~ 111 (363)
-..++.++.++|+|||++++.... . .-..+..+.....+..+..+.|
T Consensus 217 ~~~~~~~~~~~Lk~gG~l~~e~g~---~------~~~~~~~~l~~~gf~~v~~~~d 263 (275)
T PRK09328 217 YRRIIEQAPRYLKPGGWLLLEIGY---D------QGEAVRALLAAAGFADVETRKD 263 (275)
T ss_pred HHHHHHHHHHhcccCCEEEEEECc---h------HHHHHHHHHHhCCCceeEEecC
Confidence 023667788999999999997541 1 1123555555666654444334
No 302
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.86 E-value=0.0099 Score=57.30 Aligned_cols=42 Identities=21% Similarity=0.421 Sum_probs=34.5
Q ss_pred CCcceeeecccccccc-ccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 281 RTYDLLHSSFLLSDVT-QRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 281 ~sFDlVh~~~~l~~~~-~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
..||+|++.++++..- +.+....++.-+-+.|||||+|++..
T Consensus 157 ~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3699999999998543 44456789999999999999999973
No 303
>PTZ00146 fibrillarin; Provisional
Probab=95.83 E-value=0.011 Score=57.95 Aligned_cols=66 Identities=18% Similarity=0.133 Sum_probs=42.9
Q ss_pred CCCHH----HHHHHHHcCCCceeeecccCC---CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983 7 DEHEA----QIQFALERGIPAILSVIGTQK---LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 7 D~~~~----qvq~A~erg~p~~~~~~~~~~---LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s 76 (363)
|.++. ++..|.+| -.+.....++.. ++++..+||+|+|... .++ +...++.++.|+|||||+|++.
T Consensus 164 D~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva-~pd--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 164 EFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADVA-QPD--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeCC-Ccc--hHHHHHHHHHHhccCCCEEEEE
Confidence 55553 56666665 223444455432 3334568999999763 332 2345778999999999999996
No 304
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.83 E-value=0.023 Score=51.82 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHc----CC--CceeeecccCC-CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 7 DEHEAQIQFALER----GI--PAILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 7 D~~~~qvq~A~er----g~--p~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
|.++.+++.|+++ |+ .+.+...++.. ++..++.||.|++.... .+...++.++.|+|||||++++...
T Consensus 72 D~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~~----~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 72 DKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGGS----EKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred ECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCCc----ccHHHHHHHHHHHcCCCcEEEEEee
Confidence 7888888887655 53 23444445544 45555789999985321 1234689999999999999998655
No 305
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.82 E-value=0.021 Score=52.73 Aligned_cols=66 Identities=21% Similarity=0.160 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
-|.++.+++.|+++ |+. +.+...++...+...+.||+|++..+.. ....++.+.|+|||+|++...
T Consensus 108 vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~-------~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 108 IERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGP-------KIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred EeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCcc-------cccHHHHHhcCcCcEEEEEEc
Confidence 47788889888765 554 4455555655544567999999875432 345678899999999998754
No 306
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=95.79 E-value=0.009 Score=57.00 Aligned_cols=69 Identities=22% Similarity=0.339 Sum_probs=46.2
Q ss_pred CCCCCCccEEEe-----CCcccccccCCCchhhhhcccccCCeEEEEE-eCCC--CCCChhhHHHHHHHHHHHhhcceEE
Q 017983 34 TFPDDAYDLIHC-----ARCRVHWDAQGGKPLLELNRILRPGGFFIWS-ATPV--YRHDDRHRSVWNAMVNLTESMCWKA 105 (363)
Q Consensus 34 Pfpd~sFD~v~c-----s~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s-~~~~--~~~~~e~~~~~~~~~~l~~~~cw~~ 105 (363)
.|+|.|||+|+- |.+-+=++ ..+..|+.|||||||.++.- +.|. |+. .+.++.+.....+..+..
T Consensus 200 ~~~D~sfDaIiHDPPRfS~AgeLYs---eefY~El~RiLkrgGrlFHYvG~Pg~ryrG----~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 200 DFDDESFDAIIHDPPRFSLAGELYS---EEFYRELYRILKRGGRLFHYVGNPGKRYRG----LDLPKGVAERLRRVGFEV 272 (287)
T ss_pred cCCccccceEeeCCCccchhhhHhH---HHHHHHHHHHcCcCCcEEEEeCCCCccccc----CChhHHHHHHHHhcCcee
Confidence 599999999974 22221111 25889999999999999875 3332 221 134567777778888887
Q ss_pred EEEe
Q 017983 106 VARS 109 (363)
Q Consensus 106 ~~~~ 109 (363)
+.+-
T Consensus 273 v~~~ 276 (287)
T COG2521 273 VKKV 276 (287)
T ss_pred eeee
Confidence 7654
No 307
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=95.78 E-value=0.027 Score=58.01 Aligned_cols=75 Identities=16% Similarity=0.317 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEe----CCcc-------cccccC----------CCch
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHC----ARCR-------VHWDAQ----------GGKP 59 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~c----s~~~-------~~~~~~----------~~~~ 59 (363)
-|.|+.+++.|.++ |+. +.+...++..++ ++++||+|++ |-.. +.|... ...+
T Consensus 281 vD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~i 359 (445)
T PRK14904 281 VDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAEL 359 (445)
T ss_pred EECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHH
Confidence 48888888777654 665 456666676665 6789999995 2211 112211 1247
Q ss_pred hhhhcccccCCeEEEEEeCCCC
Q 017983 60 LLELNRILRPGGFFIWSATPVY 81 (363)
Q Consensus 60 l~E~~RVLrPGG~~~~s~~~~~ 81 (363)
|.++.++|||||.+++++-.+.
T Consensus 360 L~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 360 LDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred HHHHHHhcCCCcEEEEEeCCCC
Confidence 9999999999999999987544
No 308
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.024 Score=53.28 Aligned_cols=91 Identities=21% Similarity=0.271 Sum_probs=54.7
Q ss_pred ceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHH----------------HHhcCceeeeccccccCCCCC--C
Q 017983 222 RNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSI----------------IFDRGLIGMYHDWCESFNTYP--R 281 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~----------------a~~Rgl~~~~~d~~e~~lpfp--~ 281 (363)
-+.||+|.|+|.+.+.++-. +....+..+++.. +.++. -+++|-..++...| +.-|+ .
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg--r~g~~e~a 161 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG--RKGYAEQA 161 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc--cccCCccC
Confidence 48999999999876655521 1122223455543 32322 23444333333334 23455 8
Q ss_pred CcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 282 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 282 sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
-||.|||.-.-+ +..+|+--.|+|||.++|--.
T Consensus 162 ~YDaIhvGAaa~---------~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 162 PYDAIHVGAAAS---------ELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CcceEEEccCcc---------ccHHHHHHhhccCCeEEEeec
Confidence 999999973333 367788889999999998643
No 309
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.76 E-value=0.02 Score=53.59 Aligned_cols=100 Identities=16% Similarity=0.240 Sum_probs=51.3
Q ss_pred eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----------Cc---eeeeccccccCCCCCCCcceeee
Q 017983 223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----------GL---IGMYHDWCESFNTYPRTYDLLHS 288 (363)
Q Consensus 223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----------gl---~~~~~d~~e~~lpfp~sFDlVh~ 288 (363)
...|||||+|++...|+...--. -+.+..+- .-.+.+.+| |. +++++.-|-.++| |-|-.-..
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdt-LiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp--n~f~kgqL 139 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDT-LILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP--NFFEKGQL 139 (249)
T ss_pred eEEeeccCccchhhhccccCccc-eeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc--chhhhccc
Confidence 68999999999999998753111 01222222 112222222 11 3455443322332 33332222
Q ss_pred ccccc-----cccccC---C--HHHHHHHHhHhccCCeEEEEEcCHH
Q 017983 289 SFLLS-----DVTQRC---D--IADVAVEMDRILRPGGYVLVQDTLE 325 (363)
Q Consensus 289 ~~~l~-----~~~~~~---~--~~~~L~Em~RVLRPGG~lii~D~~~ 325 (363)
+-.|. |+..+. . -..++.|..=+||+||.++....+.
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 22222 221110 0 1357899999999999998876554
No 310
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.75 E-value=0.012 Score=59.11 Aligned_cols=101 Identities=21% Similarity=0.229 Sum_probs=60.4
Q ss_pred CceEEEecccccHHHHHhhcCCCeE--EEEeecCCcchHHHH---HhcCceee-----eccccccCCCCC--CCcceeee
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWV--MNVVPIDAPDTLSII---FDRGLIGM-----YHDWCESFNTYP--RTYDLLHS 288 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v--~~v~~~d~s~~L~~a---~~Rgl~~~-----~~d~~e~~lpfp--~sFDlVh~ 288 (363)
..++||+|.|.|.-+.++.+ +|- -+++-...+..|..+ .++..... ..+.-+.++++| ..|++|+.
T Consensus 114 pqsiLDvG~GPgtgl~A~n~--i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 114 PQSILDVGAGPGTGLWALND--IWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred cchhhccCCCCchhhhhhcc--cCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 45799999999986655543 221 011122223222111 11111111 111123467777 99999998
Q ss_pred ccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 289 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 289 ~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
..=|-|..+.-.+...+.-...+|+|||.++|.+.
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 77666655544466688889999999999999975
No 311
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=95.74 E-value=0.0084 Score=58.59 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=49.8
Q ss_pred CCcCCCCHHHHHHHHHc------CCCceeeecccCC-CCCCCCC---ccEEE-eCCccccccc-CCCchhhhhcccccCC
Q 017983 3 LAPKDEHEAQIQFALER------GIPAILSVIGTQK-LTFPDDA---YDLIH-CARCRVHWDA-QGGKPLLELNRILRPG 70 (363)
Q Consensus 3 ~ap~D~~~~qvq~A~er------g~p~~~~~~~~~~-LPfpd~s---FD~v~-cs~~~~~~~~-~~~~~l~E~~RVLrPG 70 (363)
+.+-|+|+.+++.|.++ ++++...+.+... ++++... .++++ +.....++.. +...+|+++.++|+||
T Consensus 91 ~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pg 170 (301)
T TIGR03438 91 YVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPG 170 (301)
T ss_pred EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCC
Confidence 45679999999999876 2333444556544 5665443 23333 3334444443 2356899999999999
Q ss_pred eEEEEEeC
Q 017983 71 GFFIWSAT 78 (363)
Q Consensus 71 G~~~~s~~ 78 (363)
|.|++...
T Consensus 171 G~~lig~d 178 (301)
T TIGR03438 171 GGLLIGVD 178 (301)
T ss_pred CEEEEecc
Confidence 99999855
No 312
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.71 E-value=0.0077 Score=60.03 Aligned_cols=74 Identities=24% Similarity=0.275 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHcC---------------CCceeeecccC------CCCCCCCCccEEEeCCcccccccCC---Cchhh
Q 017983 6 KDEHEAQIQFALERG---------------IPAILSVIGTQ------KLTFPDDAYDLIHCARCRVHWDAQG---GKPLL 61 (363)
Q Consensus 6 ~D~~~~qvq~A~erg---------------~p~~~~~~~~~------~LPfpd~sFD~v~cs~~~~~~~~~~---~~~l~ 61 (363)
-|++..-|++|.+|= ..+.+...+.. .++.+...||+|-|-.|+|+--... ..+|.
T Consensus 91 ~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~ 170 (331)
T PF03291_consen 91 IDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLK 170 (331)
T ss_dssp EES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHH
Confidence 388899999999884 44555555522 2344456999999998887765432 35889
Q ss_pred hhcccccCCeEEEEEeCC
Q 017983 62 ELNRILRPGGFFIWSATP 79 (363)
Q Consensus 62 E~~RVLrPGG~~~~s~~~ 79 (363)
-+.+.|||||+|+.+.|.
T Consensus 171 Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 171 NVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp HHHHTEEEEEEEEEEEE-
T ss_pred HHHHhcCCCCEEEEEecC
Confidence 999999999999999993
No 313
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=0.017 Score=53.40 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=37.2
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc---Cc--eeeeccccccCCCCCCCcceeeecc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR---GL--IGMYHDWCESFNTYPRTYDLLHSSF 290 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R---gl--~~~~~d~~e~~lpfp~sFDlVh~~~ 290 (363)
.+.|+|+|||||.|+...+-.+.. .|.++|.. ++++++.+. +. +..+.. +-.-|..-||.|+.+=
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~---dv~~~~~~~dtvimNP 116 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVEFVVA---DVSDFRGKFDTVIMNP 116 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceEEEEc---chhhcCCccceEEECC
Confidence 468999999999876555544432 24455554 555554433 22 222221 1233458899888863
No 314
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.67 E-value=0.016 Score=57.98 Aligned_cols=73 Identities=23% Similarity=0.381 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHHc----CCC-c-eeeecccCCCCCCCCCccEEEeCC----cc-ccccc--C-CCchhhhhcccccCCe
Q 017983 6 KDEHEAQIQFALER----GIP-A-ILSVIGTQKLTFPDDAYDLIHCAR----CR-VHWDA--Q-GGKPLLELNRILRPGG 71 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~-~~~~~~~~~LPfpd~sFD~v~cs~----~~-~~~~~--~-~~~~l~E~~RVLrPGG 71 (363)
.|+.+.|++-|... |+. . .+.+.++..|||++++||.|.|-- .. ..-.. . -..+|.++.+|||+||
T Consensus 225 ~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG 304 (347)
T COG1041 225 SDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGG 304 (347)
T ss_pred cchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCc
Confidence 48899999998754 444 2 234448999999999999999821 10 11000 0 1258899999999999
Q ss_pred EEEEEeC
Q 017983 72 FFIWSAT 78 (363)
Q Consensus 72 ~~~~s~~ 78 (363)
++++..|
T Consensus 305 ~~vf~~p 311 (347)
T COG1041 305 RIVFAAP 311 (347)
T ss_pred EEEEecC
Confidence 9999988
No 315
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.67 E-value=0.0032 Score=59.83 Aligned_cols=103 Identities=20% Similarity=0.208 Sum_probs=71.6
Q ss_pred CCCCHHHHHHHHHcCCCceeeecccCC-CC-CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCC
Q 017983 6 KDEHEAQIQFALERGIPAILSVIGTQK-LT-FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRH 83 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~p~~~~~~~~~~-LP-fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~ 83 (363)
-|+|++|+..|.|+|+==.+.+.++.. |+ -....||+|.+..++...- +.+.++.-+.+.|.|||.|++|+-..-..
T Consensus 153 vDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG-~Le~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 153 VDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLG-ALEGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred CchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhc-chhhHHHHHHHhcCCCceEEEEecccCCC
Confidence 489999999999999765566666543 44 6678999999998885544 45679999999999999999995422111
Q ss_pred C-------hhhHHHHHHHHHHHhhcceEEEEEe
Q 017983 84 D-------DRHRSVWNAMVNLTESMCWKAVARS 109 (363)
Q Consensus 84 ~-------~e~~~~~~~~~~l~~~~cw~~~~~~ 109 (363)
+ .+......-+..+...-..+.+.-.
T Consensus 232 ~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 232 GGFVLGPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred CCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence 1 1111123456666666666666543
No 316
>PRK13699 putative methylase; Provisional
Probab=95.63 E-value=0.031 Score=52.69 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=25.6
Q ss_pred HHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCce
Q 017983 301 IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWS 340 (363)
Q Consensus 301 ~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~ 340 (363)
++.++.|+.|||||||.+++.-....+..+....+...|.
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~ 90 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFS 90 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCE
Confidence 3578999999999999988743322233333444444444
No 317
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.61 E-value=0.012 Score=57.68 Aligned_cols=101 Identities=22% Similarity=0.299 Sum_probs=58.6
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCCC---CCCcceeee
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNTY---PRTYDLLHS 288 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lpf---p~sFDlVh~ 288 (363)
.++|||+=|-||+|+.+.+..|+. .|+.+|.| ..|+.+.+- |+ +..+...+-..+.. .+.||+|++
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~--~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAK--EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTES--EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 359999999999999987776643 35666777 667665544 32 11222112111211 278999997
Q ss_pred c---cccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 289 S---FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 289 ~---~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
. +.=+...-..+..+++....++|+|||.++++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3 2111111111346788889999999999988743
No 318
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=95.55 E-value=0.098 Score=53.87 Aligned_cols=105 Identities=13% Similarity=0.100 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHHc----CCCceeeecccCCCCCC-CCCccEEEeCCccccccc--------------------CC----
Q 017983 6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFP-DDAYDLIHCARCRVHWDA--------------------QG---- 56 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfp-d~sFD~v~cs~~~~~~~~--------------------~~---- 56 (363)
-|.|+.+++.|++. |..+.+...+.....++ +++||+|+|+-=.++-.+ ++
T Consensus 281 VDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~y 360 (423)
T PRK14966 281 SDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCI 360 (423)
T ss_pred EECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHH
Confidence 48899999998875 55556666665443343 468999999542111000 00
Q ss_pred CchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEecCCCc-eeEEE
Q 017983 57 GKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNR-IGFVI 119 (363)
Q Consensus 57 ~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~~~~-~~~~i 119 (363)
..++.++.+.|+|||++++.... ..-..+.++.....|..+....|..| -.+.+
T Consensus 361 r~Ii~~a~~~LkpgG~lilEiG~---------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~ 415 (423)
T PRK14966 361 RTLAQGAPDRLAEGGFLLLEHGF---------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTL 415 (423)
T ss_pred HHHHHHHHHhcCCCcEEEEEECc---------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEE
Confidence 13556667899999999987652 12346777777778877665556544 24443
No 319
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.47 E-value=0.02 Score=58.88 Aligned_cols=76 Identities=18% Similarity=0.324 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeecccCCCC-CCCCCccEEEeC-Cc--ccccccC------------------CCc
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGTQKLT-FPDDAYDLIHCA-RC--RVHWDAQ------------------GGK 58 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LP-fpd~sFD~v~cs-~~--~~~~~~~------------------~~~ 58 (363)
-|+|+..++.+.++ |+. +.+...++..++ +.+++||.|+|- -| .-.+..+ ...
T Consensus 268 ~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~ 347 (431)
T PRK14903 268 VDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLR 347 (431)
T ss_pred EECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHH
Confidence 48888888887655 665 456677777776 677899999962 12 1111111 124
Q ss_pred hhhhhcccccCCeEEEEEeCCCC
Q 017983 59 PLLELNRILRPGGFFIWSATPVY 81 (363)
Q Consensus 59 ~l~E~~RVLrPGG~~~~s~~~~~ 81 (363)
.|.++.+.|||||++++|+-.+.
T Consensus 348 iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 348 IVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred HHHHHHHhcCCCCEEEEEECCCC
Confidence 68899999999999999977544
No 320
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.37 E-value=0.043 Score=52.65 Aligned_cols=76 Identities=12% Similarity=0.262 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEe----CCc-cc--------cccc--------CCCch
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHC----ARC-RV--------HWDA--------QGGKP 59 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~c----s~~-~~--------~~~~--------~~~~~ 59 (363)
-|.++..++.+.++ |+. +.+...++..++...++||+|++ |-. .. .|.. ....+
T Consensus 102 ~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~i 181 (264)
T TIGR00446 102 NEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKEL 181 (264)
T ss_pred EcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHH
Confidence 48888888777654 654 45666677777777778999985 211 00 1111 01248
Q ss_pred hhhhcccccCCeEEEEEeCCCC
Q 017983 60 LLELNRILRPGGFFIWSATPVY 81 (363)
Q Consensus 60 l~E~~RVLrPGG~~~~s~~~~~ 81 (363)
|.++.+.|||||++++|+-.+.
T Consensus 182 L~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 182 IDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred HHHHHHhcCCCCEEEEEeCCCC
Confidence 8999999999999999977544
No 321
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=95.33 E-value=0.022 Score=52.70 Aligned_cols=69 Identities=19% Similarity=0.349 Sum_probs=48.6
Q ss_pred CCCHHHH----HHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEE
Q 017983 7 DEHEAQI----QFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 7 D~~~~qv----q~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s 76 (363)
|.|+..+ +.|.++++++...+.+.....++ +.||+|+++.++.+...+. ...+..|..-++|||++++-
T Consensus 59 D~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 59 DISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp ESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred ECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 4555433 45667799988888897777776 7899999987776655431 35788889999999998883
No 322
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=95.31 E-value=0.036 Score=50.46 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=68.3
Q ss_pred cCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc----e-ee-eccccccCCCCC-CCcceee
Q 017983 216 INWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----I-GM-YHDWCESFNTYP-RTYDLLH 287 (363)
Q Consensus 216 i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl----~-~~-~~d~~e~~lpfp-~sFDlVh 287 (363)
+++.+...||.+|.|||-|..+++.+++.--++..+..+ +....-.++-- + +. ++.. +..--++ .-||.|+
T Consensus 44 I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~-~~l~e~~gq~~D~vi 122 (194)
T COG3963 44 IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLR-TTLGEHKGQFFDSVI 122 (194)
T ss_pred cCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHH-HHHhhcCCCeeeeEE
Confidence 455566799999999999999999988755556666655 43333222211 1 11 1110 0112256 8899999
Q ss_pred eccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
|.-=+-.++.. .-..+|.+..--|++||.++-..
T Consensus 123 S~lPll~~P~~-~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 123 SGLPLLNFPMH-RRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred eccccccCcHH-HHHHHHHHHHHhcCCCCeEEEEE
Confidence 98666555432 23578899999999999988653
No 323
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=95.29 E-value=0.021 Score=56.49 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHcCC----------CceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEE
Q 017983 6 KDEHEAQIQFALERGI----------PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFI 74 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~----------p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~ 74 (363)
-|.|+.+++.|+++.- .+.+.+.+.+ ..+++||+|+|..+++|++++. ..++..+.+ +.+||. +
T Consensus 172 vD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~---~l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-i 246 (315)
T PLN02585 172 SDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE---SLSGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-I 246 (315)
T ss_pred EECCHHHHHHHHHHHHhcccccccccceEEEEcchh---hcCCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-E
Confidence 4899999999988731 1233333433 3368999999999999987643 234455554 455555 4
Q ss_pred EEeC
Q 017983 75 WSAT 78 (363)
Q Consensus 75 ~s~~ 78 (363)
++..
T Consensus 247 Is~~ 250 (315)
T PLN02585 247 ISFA 250 (315)
T ss_pred EEeC
Confidence 5543
No 324
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=95.26 E-value=0.068 Score=47.67 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccC-------CCchhhhhcccccCCeEEE
Q 017983 7 DEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-------GGKPLLELNRILRPGGFFI 74 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-------~~~~l~E~~RVLrPGG~~~ 74 (363)
|+++..++.|++. ++. +.+...+.. -+++++.||+|+|.- |+... ...++.++.+.|||||.|+
T Consensus 62 Di~~~a~~~a~~n~~~n~~~~v~~~~~d~~-~~~~~~~fD~Iv~NP---P~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 62 DINPDALELAKRNAERNGLENVEVVQSDLF-EALPDGKFDLIVSNP---PFHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp ESBHHHHHHHHHHHHHTTCTTEEEEESSTT-TTCCTTCEEEEEE------SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHhcCcccccccccccc-ccccccceeEEEEcc---chhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 7888888888763 666 444444431 134489999999963 22211 1357899999999999997
Q ss_pred EEeC
Q 017983 75 WSAT 78 (363)
Q Consensus 75 ~s~~ 78 (363)
+...
T Consensus 138 lv~~ 141 (170)
T PF05175_consen 138 LVIN 141 (170)
T ss_dssp EEEE
T ss_pred EEee
Confidence 7644
No 325
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=95.19 E-value=0.0099 Score=54.99 Aligned_cols=46 Identities=28% Similarity=0.577 Sum_probs=32.4
Q ss_pred CCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeC
Q 017983 33 LTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 33 LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
.+.+.+.||+|+|.-+++.+... ..+++.-+.+.|+|||+|++...
T Consensus 130 ~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 130 PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 34567899999999999998753 36799999999999999999855
No 326
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=95.14 E-value=0.061 Score=49.40 Aligned_cols=65 Identities=15% Similarity=0.038 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 7 DEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
|.++.+++.|+++ |+. +.+...+......+.+.||+|++..+..+ ...++.+.|+|||.+++...
T Consensus 107 d~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 107 ERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE-------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred eCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEEc
Confidence 6678888888765 554 44444444332123589999998754322 35678899999999999755
No 327
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.10 E-value=0.22 Score=48.13 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCC-------------ccccccc-----------C
Q 017983 6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCAR-------------CRVHWDA-----------Q 55 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~-------------~~~~~~~-----------~ 55 (363)
-|+|+.+++.|++. |+. +.+...+... +++++.||+|+|.- ...|-+. .
T Consensus 144 vDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~ 222 (284)
T TIGR00536 144 VDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNI 222 (284)
T ss_pred EECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHH
Confidence 47899999888875 554 4444445432 56666899999951 0111000 0
Q ss_pred CCchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHh-hcceEEEEEecCCCc
Q 017983 56 GGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTE-SMCWKAVARSVDSNR 114 (363)
Q Consensus 56 ~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~-~~cw~~~~~~~~~~~ 114 (363)
-..++.++.++|+|||++++.... .....+..+.. ...|..+.-..|..|
T Consensus 223 ~~~ii~~a~~~L~~gG~l~~e~g~---------~q~~~~~~~~~~~~~~~~~~~~~D~~g 273 (284)
T TIGR00536 223 LRQIIELAPDYLKPNGFLVCEIGN---------WQQKSLKELLRIKFTWYDVENGRDLNG 273 (284)
T ss_pred HHHHHHHHHHhccCCCEEEEEECc---------cHHHHHHHHHHhcCCCceeEEecCCCC
Confidence 124678889999999999998662 11234555555 456765554555444
No 328
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=94.92 E-value=0.14 Score=50.11 Aligned_cols=101 Identities=12% Similarity=0.125 Sum_probs=61.9
Q ss_pred CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc----------eeeeccccccCCC-CCCCccee
Q 017983 219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----------IGMYHDWCESFNT-YPRTYDLL 286 (363)
Q Consensus 219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl----------~~~~~d~~e~~lp-fp~sFDlV 286 (363)
+..++||=+|-|.|+.++++.+++- +-.++.++.- +.++.+++.-- +.++-+..-..+. ++++||+|
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence 4458999999999999999998752 2233444444 45555554411 1111111112233 44789999
Q ss_pred eeccccccccccCC--HHHHHHHHhHhccCCeEEEEE
Q 017983 287 HSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 287 h~~~~l~~~~~~~~--~~~~L~Em~RVLRPGG~lii~ 321 (363)
++...=. ...... -..+.+.+.|.|+|+|.++..
T Consensus 154 i~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 154 IVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 9863211 110000 167899999999999999998
No 329
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.85 E-value=0.51 Score=44.36 Aligned_cols=93 Identities=20% Similarity=0.348 Sum_probs=65.5
Q ss_pred CceEEEecccccHHHHHhhc---CC-CeEEEEeecCCcchHHHHHhcC-ceeeeccccccCCC--CC---CCcceeeecc
Q 017983 221 VRNVMDMNASYGGFAAALID---QP-LWVMNVVPIDAPDTLSIIFDRG-LIGMYHDWCESFNT--YP---RTYDLLHSSF 290 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~---~~-v~v~~v~~~d~s~~L~~a~~Rg-l~~~~~d~~e~~lp--fp---~sFDlVh~~~ 290 (363)
..+||=+|+-+|+....+.+ .| +.+..+.|....+.|.++.+|- ++.++.| ++.| |. ...|+|.+.
T Consensus 77 g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D---A~~P~~Y~~~Ve~VDviy~D- 152 (231)
T COG1889 77 GSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILED---ARKPEKYRHLVEKVDVIYQD- 152 (231)
T ss_pred CCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecc---cCCcHHhhhhcccccEEEEe-
Confidence 45999999999998877766 23 3445555555557889999986 4666776 3455 32 567777765
Q ss_pred ccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
+..+...+-+..-++..||+||++++.
T Consensus 153 ----VAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 153 ----VAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred ----cCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 223344555788899999999988886
No 330
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.85 E-value=0.1 Score=48.70 Aligned_cols=107 Identities=19% Similarity=0.190 Sum_probs=65.4
Q ss_pred cccCCCCCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc--------chHHHHHhcCc--eeeeccccccCCCCC
Q 017983 214 LAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP--------DTLSIIFDRGL--IGMYHDWCESFNTYP 280 (363)
Q Consensus 214 l~i~~~~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s--------~~L~~a~~Rgl--~~~~~d~~e~~lpfp 280 (363)
.+++++ .+|.|+=-|-|.|.+-|... ...|-+++|.+.. .+-.++++.+. ...+..-- -.++-|
T Consensus 44 aGlkpg--~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~-~A~~~p 120 (238)
T COG4798 44 AGLKPG--ATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPL-VALGAP 120 (238)
T ss_pred eccCCC--CEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcc-cccCCC
Confidence 356665 49999999999999888763 1256677777652 12233444433 11111100 013322
Q ss_pred CCcceeeecccccccc----ccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 281 RTYDLLHSSFLLSDVT----QRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 281 ~sFDlVh~~~~l~~~~----~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
+-.|++.....-|.++ +.....++-.++++.|||||.+.+.|.
T Consensus 121 q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 6667766644433222 234568899999999999999999874
No 331
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=94.83 E-value=0.026 Score=55.61 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCC-CccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983 6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDD-AYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV 80 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~-sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~ 80 (363)
-|+.+..|+.|++. |++..........+.++.+ .||+|+|+.-+... ..+..++.|.|||||++++|+=..
T Consensus 191 ~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~vl----~~La~~~~~~lkpgg~lIlSGIl~ 266 (300)
T COG2264 191 VDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAEVL----VELAPDIKRLLKPGGRLILSGILE 266 (300)
T ss_pred ecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHHHH----HHHHHHHHHHcCCCceEEEEeehH
Confidence 37778888888765 6654233333444567764 99999998643331 368889999999999999998421
Q ss_pred CCCChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983 81 YRHDDRHRSVWNAMVNLTESMCWKAVARS 109 (363)
Q Consensus 81 ~~~~~e~~~~~~~~~~l~~~~cw~~~~~~ 109 (363)
..-+.+.+...+-.|++....
T Consensus 267 --------~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 267 --------DQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred --------hHHHHHHHHHHhCCCeEeEEE
Confidence 112334444445567666644
No 332
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.81 E-value=0.099 Score=49.27 Aligned_cols=84 Identities=17% Similarity=0.272 Sum_probs=60.1
Q ss_pred CCCCccEEEeCCccccccc--CCCchhhhhcccccCCeE-----EEEEeCCC---C-CCChhhHHHHHHHHHHHhhcceE
Q 017983 36 PDDAYDLIHCARCRVHWDA--QGGKPLLELNRILRPGGF-----FIWSATPV---Y-RHDDRHRSVWNAMVNLTESMCWK 104 (363)
Q Consensus 36 pd~sFD~v~cs~~~~~~~~--~~~~~l~E~~RVLrPGG~-----~~~s~~~~---~-~~~~e~~~~~~~~~~l~~~~cw~ 104 (363)
+++.||+|.||+++--.++ ..+..++-+.+.|||+|. |++..|.- + ++.. .+.+..+...|++.
T Consensus 101 ~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~-----~~~l~~im~~LGf~ 175 (219)
T PF11968_consen 101 ESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMT-----EERLREIMESLGFT 175 (219)
T ss_pred cccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccC-----HHHHHHHHHhCCcE
Confidence 4889999999998744442 236799999999999999 77776621 1 1221 35788889999998
Q ss_pred EEEEecCCCceeEEEEecCCC
Q 017983 105 AVARSVDSNRIGFVIYQKPVS 125 (363)
Q Consensus 105 ~~~~~~~~~~~~~~i~~k~~~ 125 (363)
.+..+ +.+..+--.|+|...
T Consensus 176 ~~~~~-~~~Kl~y~l~r~~~~ 195 (219)
T PF11968_consen 176 RVKYK-KSKKLAYWLFRKSGK 195 (219)
T ss_pred EEEEE-ecCeEEEEEEeecCC
Confidence 88765 445566667777543
No 333
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=94.80 E-value=0.12 Score=49.22 Aligned_cols=123 Identities=16% Similarity=0.235 Sum_probs=71.8
Q ss_pred CCceEEEecccccHHHHHhhcCC-CeEEEEeecCCc-chHHHHHhc------C----ceeeeccccccCCC-CCC-Ccce
Q 017983 220 SVRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDR------G----LIGMYHDWCESFNT-YPR-TYDL 285 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~-v~v~~v~~~d~s-~~L~~a~~R------g----l~~~~~d~~e~~lp-fp~-sFDl 285 (363)
+.++||=+|-|.|+.+.++.+.+ +. .++.++.. ..++.+++- + -+.++.+.+-.++- ..+ .||+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~--~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVE--SITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-S--EEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcc--eEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 46899999999999999999875 33 34444444 455554332 1 12233332322222 344 8999
Q ss_pred eeecccccccccc-CCHHHHHHHHhHhccCCeEEEEEc-----CHHHHHHHHHHHHhCCceeeee
Q 017983 286 LHSSFLLSDVTQR-CDIADVAVEMDRILRPGGYVLVQD-----TLEMINKLKPVLHSLQWSTNIY 344 (363)
Q Consensus 286 Vh~~~~l~~~~~~-~~~~~~L~Em~RVLRPGG~lii~D-----~~~~~~~i~~l~~~l~W~~~~~ 344 (363)
|+....-...+.. ---...++.+.|.|+|||.+++.- ..+.+..+.+..+...-.+...
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~ 218 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPY 218 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEE
Confidence 9975332111100 012578999999999999999863 2345566666666665555443
No 334
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=94.79 E-value=0.043 Score=55.65 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=60.7
Q ss_pred eEEEecccccHHHHHhhcC--CCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeecccc
Q 017983 223 NVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL 292 (363)
Q Consensus 223 ~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l 292 (363)
+|||+-||+|.++..++.+ ++ -.|+..|.+ +.++.+.+. ++ +.+++..+...+... +.||+|...= +
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 8999999999999999876 43 246677776 444433221 22 234443343334333 6799998763 3
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
. ....++...-+.+++||.+.++
T Consensus 124 G------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 G------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C------CcHHHHHHHHHhcccCCEEEEE
Confidence 2 2246999999999999999998
No 335
>PRK11524 putative methyltransferase; Provisional
Probab=94.78 E-value=0.076 Score=51.46 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=24.1
Q ss_pred HHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHH
Q 017983 301 IADVAVEMDRILRPGGYVLVQDTLEMINKLKPV 333 (363)
Q Consensus 301 ~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l 333 (363)
++..|.|+.|+|||||.+++.-....+..+..+
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~~~~~~~~~~~~ 91 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMNSTENMPFIDLY 91 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCchhhhHHHHH
Confidence 357999999999999999987554444434333
No 336
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=94.72 E-value=0.12 Score=52.09 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=57.9
Q ss_pred CCCCCceEEEecccccHHHHHhhcC----CCeEEEEeecCCc-c---hHHHHHhc-Cce---eeeccccccCCC--CC--
Q 017983 217 NWSSVRNVMDMNASYGGFAAALIDQ----PLWVMNVVPIDAP-D---TLSIIFDR-GLI---GMYHDWCESFNT--YP-- 280 (363)
Q Consensus 217 ~~~~~r~VLDvGCG~G~faa~L~~~----~v~v~~v~~~d~s-~---~L~~a~~R-gl~---~~~~d~~e~~lp--fp-- 280 (363)
.+.+..+||||.++.|+=+..|+.. +.. |++.|.+ + .|....+| |+. -+.+|.. .++ ++
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~i---V~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~--~~~~~~~~~ 227 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAI---VVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDAR--RLAELLPGG 227 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCce---EEEEcCCHHHHHHHHHHHHHcCCCceEEEecccc--ccccccccc
Confidence 3444579999999999855555442 222 5677777 3 33333333 442 2233321 222 23
Q ss_pred CCcceeeec------ccccccc------ccCC-------HHHHHHHHhHhccCCeEEEEEc
Q 017983 281 RTYDLLHSS------FLLSDVT------QRCD-------IADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 281 ~sFDlVh~~------~~l~~~~------~~~~-------~~~~L~Em~RVLRPGG~lii~D 322 (363)
..||.|.+. .+++.=+ ...+ -..+|....++|||||.++.+.
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 359999852 3332100 0001 1468888999999999999984
No 337
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=94.71 E-value=0.13 Score=50.06 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCC-----c-c----cccccCC-------------
Q 017983 6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCAR-----C-R----VHWDAQG------------- 56 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~-----~-~----~~~~~~~------------- 56 (363)
-|+|+.+++.|++. |+. +.+...+... ++++++||+|+|.- . . ..+..++
T Consensus 151 vDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~ 229 (284)
T TIGR03533 151 VDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDL 229 (284)
T ss_pred EECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHH
Confidence 48899999888765 654 4445555422 45677899999851 0 0 0010001
Q ss_pred -CchhhhhcccccCCeEEEEEeC
Q 017983 57 -GKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 57 -~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
..++.++.++|+|||++++...
T Consensus 230 ~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 230 VRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEC
Confidence 2468889999999999999866
No 338
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=94.69 E-value=0.014 Score=54.92 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=63.1
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCCCCcceeeecccccccccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR 298 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~ 298 (363)
..++||+|+|-|.....++..- -.|.+...| .|...-..++. +-...+|.+. .=.||+|.|-.++.-.-
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk~ynVl~~~ew~~t----~~k~dli~clNlLDRc~-- 183 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKKNYNVLTEIEWLQT----DVKLDLILCLNLLDRCF-- 183 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhcCCceeeehhhhhc----CceeehHHHHHHHHhhc--
Confidence 4789999999999888776531 125566667 67777777765 2223333221 12399999987775221
Q ss_pred CCHHHHHHHHhHhccC-CeEEEEE
Q 017983 299 CDIADVAVEMDRILRP-GGYVLVQ 321 (363)
Q Consensus 299 ~~~~~~L~Em~RVLRP-GG~lii~ 321 (363)
+.-.+|..++-||+| .|.+|+.
T Consensus 184 -~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 184 -DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred -ChHHHHHHHHHHhccCCCcEEEE
Confidence 346799999999999 9998886
No 339
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=94.66 E-value=0.064 Score=48.39 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=32.0
Q ss_pred CCCCCccEEEeCCccc---ccccC-------CCchhhhhcccccCCeEEEEEeC
Q 017983 35 FPDDAYDLIHCARCRV---HWDAQ-------GGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 35 fpd~sFD~v~cs~~~~---~~~~~-------~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
+++++||+|+|..+.+ +|..+ ...+|.++.|+|||||++++...
T Consensus 94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 6788999999854321 12211 14689999999999999999754
No 340
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=94.54 E-value=0.05 Score=51.53 Aligned_cols=72 Identities=7% Similarity=-0.035 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHH-----------------cCCCceeeecccCCCCCCC---CCccEEEeCCcccccccC-CCchhhhhc
Q 017983 6 KDEHEAQIQFALE-----------------RGIPAILSVIGTQKLTFPD---DAYDLIHCARCRVHWDAQ-GGKPLLELN 64 (363)
Q Consensus 6 ~D~~~~qvq~A~e-----------------rg~p~~~~~~~~~~LPfpd---~sFD~v~cs~~~~~~~~~-~~~~l~E~~ 64 (363)
-|.|+..|+.+.+ +|..+.+.+.|.-.|+.+. +.||+|.=..++++.+.+ ..++...|.
T Consensus 71 vDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~ 150 (226)
T PRK13256 71 IELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMML 150 (226)
T ss_pred EecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHH
Confidence 3778888887654 3667888888888887532 689998755555555443 467999999
Q ss_pred ccccCCeEEEEEe
Q 017983 65 RILRPGGFFIWSA 77 (363)
Q Consensus 65 RVLrPGG~~~~s~ 77 (363)
++|+|||.+++..
T Consensus 151 ~lL~pgg~llll~ 163 (226)
T PRK13256 151 EVCSNNTQILLLV 163 (226)
T ss_pred HHhCCCcEEEEEE
Confidence 9999999988863
No 341
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.0079 Score=54.45 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=55.0
Q ss_pred CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEecCC
Q 017983 33 LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDS 112 (363)
Q Consensus 33 LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~~ 112 (363)
+--.-+.||.|.|+.|+. +.+.....+.-+.+.|||.|..++++| +....+...++.+.++- +|-.+-..|+
T Consensus 97 sq~eq~tFDiIlaADClF-fdE~h~sLvdtIk~lL~p~g~Al~fsP---RRg~sL~kF~de~~~~g--f~v~l~enyd-- 168 (201)
T KOG3201|consen 97 SQQEQHTFDIILAADCLF-FDEHHESLVDTIKSLLRPSGRALLFSP---RRGQSLQKFLDEVGTVG--FTVCLEENYD-- 168 (201)
T ss_pred HHHhhCcccEEEeccchh-HHHHHHHHHHHHHHHhCcccceeEecC---cccchHHHHHHHHHhce--eEEEecccHh--
Confidence 445557999999999983 233335688889999999999999999 66666555666555443 4544444453
Q ss_pred CceeEEEEecC
Q 017983 113 NRIGFVIYQKP 123 (363)
Q Consensus 113 ~~~~~~i~~k~ 123 (363)
.+|||+.
T Consensus 169 ----e~iwqrh 175 (201)
T KOG3201|consen 169 ----EAIWQRH 175 (201)
T ss_pred ----HHHHHHH
Confidence 4778764
No 342
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.51 E-value=0.059 Score=50.38 Aligned_cols=113 Identities=16% Similarity=0.298 Sum_probs=59.1
Q ss_pred CceEEEecccccHHHHHhhcC---C--CeEEEEeecCCcchHHHHHhcCceeeeccccccCC--CCC-CCcceeeecccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQ---P--LWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFN--TYP-RTYDLLHSSFLL 292 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~---~--v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~l--pfp-~sFDlVh~~~~l 292 (363)
..+|+|+||-+|+++..++++ + +.+.++.|.+....+. .=+|-+ ....|...+ -++ ..+|+|.+...=
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~--~iq~d~--~~~~~~~~l~~~l~~~~~DvV~sD~ap 121 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVI--FLQGDI--TDEDTLEKLLEALGGAPVDVVLSDMAP 121 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCce--EEeeec--cCccHHHHHHHHcCCCCcceEEecCCC
Confidence 359999999999998877663 1 3445566665431110 001100 000000001 133 346888754322
Q ss_pred --------ccccccCCHHHHHHHHh-HhccCCeEEEEEc-----CHHHHHHHHHHHHhCC
Q 017983 293 --------SDVTQRCDIADVAVEMD-RILRPGGYVLVQD-----TLEMINKLKPVLHSLQ 338 (363)
Q Consensus 293 --------~~~~~~~~~~~~L~Em~-RVLRPGG~lii~D-----~~~~~~~i~~l~~~l~ 338 (363)
.|...- .+..+..||. ++|+|||.+++-+ ..+.+..++++-+.++
T Consensus 122 ~~~g~~~~Dh~r~~-~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~ 180 (205)
T COG0293 122 NTSGNRSVDHARSM-YLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVK 180 (205)
T ss_pred CcCCCccccHHHHH-HHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeE
Confidence 222111 1234445554 5999999999974 4556666666554443
No 343
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.38 E-value=0.032 Score=54.18 Aligned_cols=73 Identities=12% Similarity=0.246 Sum_probs=53.1
Q ss_pred CCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCChh-------hHHHHHHHHHHHhhcceEEEEEe
Q 017983 37 DDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDR-------HRSVWNAMVNLTESMCWKAVARS 109 (363)
Q Consensus 37 d~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e-------~~~~~~~~~~l~~~~cw~~~~~~ 109 (363)
.++||+|++.. .+.-..+--.+|..+.++|||||+++=-+|..|..-+- ..-.+++|..+++.+.|+...+.
T Consensus 163 ~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 163 KGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred CCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 37999998642 12212223458999999999999998889987753332 22238999999999999998876
Q ss_pred c
Q 017983 110 V 110 (363)
Q Consensus 110 ~ 110 (363)
.
T Consensus 242 ~ 242 (270)
T PF07942_consen 242 S 242 (270)
T ss_pred E
Confidence 3
No 344
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.33 E-value=0.031 Score=50.53 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=35.6
Q ss_pred CCCCcceeeecccccccc--------ccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 279 YPRTYDLLHSSFLLSDVT--------QRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 279 fp~sFDlVh~~~~l~~~~--------~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
|.++||.+.|-+.++|.. ++..-...+.++.|+|||||.+++.-
T Consensus 60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 678999999999998842 22233678999999999999999974
No 345
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.28 E-value=0.17 Score=53.13 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=29.1
Q ss_pred CceEEEecccccHHHHHhhcCC-------CeEEEEeecCCc-chHHHHH
Q 017983 221 VRNVMDMNASYGGFAAALIDQP-------LWVMNVVPIDAP-DTLSIIF 261 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~-------v~v~~v~~~d~s-~~L~~a~ 261 (363)
..+|||.+||+|+|..+++++. ....++.+.|.. ..+..+.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~ 80 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK 80 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH
Confidence 4589999999999988887531 123577888877 5555444
No 346
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=94.27 E-value=0.049 Score=53.25 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEeC
Q 017983 7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
++|++|...|.+| |++ +.+. .+..+...+.||.|++-...+|+.. +-..++.-+.++|+|||.+++-+=
T Consensus 102 TlS~~Q~~~~~~r~~~~gl~~~v~v~---l~d~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 102 TLSEEQLAYAEKRIAARGLEDNVEVR---LQDYRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred eCCHHHHHHHHHHHHHcCCCcccEEE---eccccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 6799999998875 665 3333 3344444455999999988888864 235799999999999999998643
No 347
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.26 E-value=0.12 Score=51.33 Aligned_cols=62 Identities=24% Similarity=0.433 Sum_probs=47.1
Q ss_pred CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE--------cC--------HH-HHHHHHHHHHhCCceeee
Q 017983 281 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ--------DT--------LE-MINKLKPVLHSLQWSTNI 343 (363)
Q Consensus 281 ~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~--------D~--------~~-~~~~i~~l~~~l~W~~~~ 343 (363)
++||+|+..+.+- ...++-+.|.-|..+|||||.++=. |. ++ ..+.+..+++.+.|++..
T Consensus 258 ~~~d~VvTcfFID---Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 258 GSYDVVVTCFFID---TAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred CccceEEEEEEee---chHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 3699998875554 2236889999999999999987742 31 12 368899999999999877
Q ss_pred ec
Q 017983 344 YH 345 (363)
Q Consensus 344 ~~ 345 (363)
+.
T Consensus 335 e~ 336 (369)
T KOG2798|consen 335 ER 336 (369)
T ss_pred ee
Confidence 63
No 348
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=94.25 E-value=0.095 Score=53.97 Aligned_cols=75 Identities=20% Similarity=0.425 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeecccCCC--CCCCCCccEEEeCC-cc-----c-----ccccC----------CC
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGTQKL--TFPDDAYDLIHCAR-CR-----V-----HWDAQ----------GG 57 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~L--Pfpd~sFD~v~cs~-~~-----~-----~~~~~----------~~ 57 (363)
-|+++.+++.|+++ |+. +.+...++..+ +++ ++||+|++.- |. - .|... ..
T Consensus 281 vDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~ 359 (444)
T PRK14902 281 LDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQL 359 (444)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHH
Confidence 48888888887654 655 45555666555 355 8899999631 11 0 11100 02
Q ss_pred chhhhhcccccCCeEEEEEeCCCC
Q 017983 58 KPLLELNRILRPGGFFIWSATPVY 81 (363)
Q Consensus 58 ~~l~E~~RVLrPGG~~~~s~~~~~ 81 (363)
.+|.++.|+|||||.+++|+-.+.
T Consensus 360 ~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 360 EILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred HHHHHHHHHcCCCCEEEEEcCCCC
Confidence 478999999999999999876443
No 349
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=94.15 E-value=0.046 Score=52.32 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHcC------CCceeeecccCC--CCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEe
Q 017983 7 DEHEAQIQFALERG------IPAILSVIGTQK--LTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSA 77 (363)
Q Consensus 7 D~~~~qvq~A~erg------~p~~~~~~~~~~--LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~ 77 (363)
|-|...|.+-.+.. +.+.+..++... -|.+.+++|.|++-.++...+.+ ...++..++|+|||||.+++..
T Consensus 104 Dfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 104 DFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred CCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 45555565555442 222223333333 37788999999987766555443 4679999999999999999998
Q ss_pred CCCC
Q 017983 78 TPVY 81 (363)
Q Consensus 78 ~~~~ 81 (363)
.-.|
T Consensus 184 Yg~~ 187 (264)
T KOG2361|consen 184 YGRY 187 (264)
T ss_pred cccc
Confidence 7655
No 350
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.03 E-value=0.064 Score=48.70 Aligned_cols=119 Identities=14% Similarity=0.229 Sum_probs=70.5
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc----chHHHHHhcCceee--------eccccccCCCCC-CCcceee
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP----DTLSIIFDRGLIGM--------YHDWCESFNTYP-RTYDLLH 287 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s----~~L~~a~~Rgl~~~--------~~d~~e~~lpfp-~sFDlVh 287 (363)
.+.||.+|.|.-+++--|....+..-+|--.|.. ..++-+..+..... .+-| .+++--. ++||+|.
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~-~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIW-GAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHh-hhHHHHhhCcccEEE
Confidence 3789999999988887776543332233333433 34555555542111 1111 2334445 8999999
Q ss_pred eccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH--HHHHHHHHHHHhCCceeee
Q 017983 288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL--EMINKLKPVLHSLQWSTNI 343 (363)
Q Consensus 288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i~~l~~~l~W~~~~ 343 (363)
|+.|+-.= +..+.++.-|.+.|||.|..++.-.. +.+++..+.+...-..+..
T Consensus 109 aADClFfd---E~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 109 AADCLFFD---EHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred eccchhHH---HHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEe
Confidence 99887531 12367899999999999998887432 2333444444333344433
No 351
>PRK00811 spermidine synthase; Provisional
Probab=94.01 E-value=0.13 Score=49.86 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHcC------C---C-ceeeecccCC-CCCCCCCccEEEeCCcccccccC----CCchhhhhcccccCCe
Q 017983 7 DEHEAQIQFALERG------I---P-AILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQ----GGKPLLELNRILRPGG 71 (363)
Q Consensus 7 D~~~~qvq~A~erg------~---p-~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~----~~~~l~E~~RVLrPGG 71 (363)
|+++..++.|++.- . | +.+...|+.. ++..++.||+|++... -++... ...+++++.|.|+|||
T Consensus 107 Eid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gG 185 (283)
T PRK00811 107 EIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDST-DPVGPAEGLFTKEFYENCKRALKEDG 185 (283)
T ss_pred eCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCC-CCCCchhhhhHHHHHHHHHHhcCCCc
Confidence 67888999998751 1 1 3455555433 4556789999998543 233211 1357889999999999
Q ss_pred EEEEEeC
Q 017983 72 FFIWSAT 78 (363)
Q Consensus 72 ~~~~s~~ 78 (363)
.+++...
T Consensus 186 vlv~~~~ 192 (283)
T PRK00811 186 IFVAQSG 192 (283)
T ss_pred EEEEeCC
Confidence 9998643
No 352
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=93.94 E-value=0.03 Score=51.16 Aligned_cols=97 Identities=15% Similarity=0.269 Sum_probs=53.9
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCC---CC-CCcceeeec
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT---YP-RTYDLLHSS 289 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lp---fp-~sFDlVh~~ 289 (363)
.+|||+=||+|.++.+-+.+|+. .|+-++.+ +.+..+.+- +. ..++...+...++ .. ..||+|++.
T Consensus 44 ~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 59999999999999988888854 35555655 333322221 21 1222211111121 24 899999987
Q ss_pred cccccccccCCHHHHHHHHh--HhccCCeEEEEEcC
Q 017983 290 FLLSDVTQRCDIADVAVEMD--RILRPGGYVLVQDT 323 (363)
Q Consensus 290 ~~l~~~~~~~~~~~~L~Em~--RVLRPGG~lii~D~ 323 (363)
..+.....+..++.-+. .+|+++|.+++--.
T Consensus 122 ---PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 122 ---PPYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp ----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ---CCcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 43332111355666665 79999999988653
No 353
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=93.63 E-value=0.098 Score=53.16 Aligned_cols=72 Identities=10% Similarity=0.008 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHc----CCC----ceeeecccCCCCCCCCCccEEEeCCccccc---ccC-CCchhhhhcccccCCeEE
Q 017983 6 KDEHEAQIQFALER----GIP----AILSVIGTQKLTFPDDAYDLIHCARCRVHW---DAQ-GGKPLLELNRILRPGGFF 73 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p----~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~---~~~-~~~~l~E~~RVLrPGG~~ 73 (363)
-|+|+..++.|++. +.. +.+...+... .++..+||+|+|.-..+.- .++ ..+++.++.|+|||||.|
T Consensus 258 vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L 336 (378)
T PRK15001 258 VDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGEL 336 (378)
T ss_pred EECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEE
Confidence 48899999999864 221 2333333211 2456789999997544221 111 135789999999999999
Q ss_pred EEEeC
Q 017983 74 IWSAT 78 (363)
Q Consensus 74 ~~s~~ 78 (363)
++...
T Consensus 337 ~iV~n 341 (378)
T PRK15001 337 YIVAN 341 (378)
T ss_pred EEEEe
Confidence 99853
No 354
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=93.55 E-value=0.16 Score=49.32 Aligned_cols=107 Identities=13% Similarity=0.212 Sum_probs=54.5
Q ss_pred CCCceEEEecccccHHHHHhhcC------CCeEEEEeecCCc-chHHHHHh----cCce----eeeccccccCCCCC--C
Q 017983 219 SSVRNVMDMNASYGGFAAALIDQ------PLWVMNVVPIDAP-DTLSIIFD----RGLI----GMYHDWCESFNTYP--R 281 (363)
Q Consensus 219 ~~~r~VLDvGCG~G~faa~L~~~------~v~v~~v~~~d~s-~~L~~a~~----Rgl~----~~~~d~~e~~lpfp--~ 281 (363)
....+|||-+||+|+|..++.++ .....++.+.|.. .+..++.- +|.. .+.+...-....+. .
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 34568999999999998777652 0112356677776 44444432 3321 12221100001121 5
Q ss_pred Ccceeeeccccccc--c---------------ccCCH-HHHHHHHhHhccCCeEEEEEcCHH
Q 017983 282 TYDLLHSSFLLSDV--T---------------QRCDI-ADVAVEMDRILRPGGYVLVQDTLE 325 (363)
Q Consensus 282 sFDlVh~~~~l~~~--~---------------~~~~~-~~~L~Em~RVLRPGG~lii~D~~~ 325 (363)
.||+|+++-=|... . ..... ..++.-+.+.|++||++++.-...
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 89999986322211 0 00111 236788999999999976654443
No 355
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.18 E-value=0.16 Score=50.56 Aligned_cols=65 Identities=17% Similarity=0.045 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 7 DEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
|.++.+++.|+++ |+. +.+...++...+.+.++||+|+++....+ ....+.++|||||.+++...
T Consensus 112 Dis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 112 EYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred ECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEeC
Confidence 7888888888763 554 34445556666666688999998744322 33457789999999988654
No 356
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=93.14 E-value=0.15 Score=50.12 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=47.4
Q ss_pred cCCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcc-------------ccccc------CC---
Q 017983 5 PKDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCR-------------VHWDA------QG--- 56 (363)
Q Consensus 5 p~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~-------------~~~~~------~~--- 56 (363)
--|+|+.+++.|++. |+. +.+...+... ++++++||+|+|.--. .|.+. ++
T Consensus 162 avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~ 240 (307)
T PRK11805 162 AVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLD 240 (307)
T ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHH
Confidence 358899999988766 543 4455555422 3456789999995210 01110 00
Q ss_pred --CchhhhhcccccCCeEEEEEeC
Q 017983 57 --GKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 57 --~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
..++.++.++|+|||++++...
T Consensus 241 ~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 241 LVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEC
Confidence 2467889999999999999755
No 357
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.10 E-value=0.3 Score=49.80 Aligned_cols=17 Identities=41% Similarity=0.810 Sum_probs=15.0
Q ss_pred CC-CCcceeeeccccccc
Q 017983 279 YP-RTYDLLHSSFLLSDV 295 (363)
Q Consensus 279 fp-~sFDlVh~~~~l~~~ 295 (363)
|| +|.+++|++.++|-+
T Consensus 158 fP~~Slh~~~Ss~slHWL 175 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWL 175 (386)
T ss_pred cCCCceEEEEeeccceec
Confidence 89 999999999999743
No 358
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.10 E-value=0.32 Score=50.72 Aligned_cols=98 Identities=13% Similarity=0.244 Sum_probs=66.0
Q ss_pred eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----eeeeccccccCCCCC-CCcceeeeccccccc
Q 017983 223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IGMYHDWCESFNTYP-RTYDLLHSSFLLSDV 295 (363)
Q Consensus 223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~ 295 (363)
++|=+|||.=.+.-.|-+.+.. +|.-+|.| -.+..+..++. ..+..... ..+.|+ .|||+|+.-..+.++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~-~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDM-DQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecc-hhccCCCcceeEEEecCccccc
Confidence 8999999999888888775532 34455666 34444444442 22222212 358899 999999998888765
Q ss_pred cccC-------CHHHHHHHHhHhccCCeEEEEEcC
Q 017983 296 TQRC-------DIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 296 ~~~~-------~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
-... .....+.|+.|||+|||+++.-..
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 4221 235678999999999999776544
No 359
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.09 E-value=0.2 Score=52.18 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHHcC---CC-ceeeecccCCCCCCCCCccEEEeCCcccccccC---------CCchhhhhcccccCCeE
Q 017983 6 KDEHEAQIQFALERG---IP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ---------GGKPLLELNRILRPGGF 72 (363)
Q Consensus 6 ~D~~~~qvq~A~erg---~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~---------~~~~l~E~~RVLrPGG~ 72 (363)
-|.|..-|..++.++ .+ .....++...|.|+|+|||+|+---.+.+.-.+ ....+.|+.|||+|||.
T Consensus 77 iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk 156 (482)
T KOG2352|consen 77 IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGK 156 (482)
T ss_pred ccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCE
Confidence 467777787777775 22 344566789999999999999863333332222 22467899999999999
Q ss_pred EEEE
Q 017983 73 FIWS 76 (363)
Q Consensus 73 ~~~s 76 (363)
++..
T Consensus 157 ~~sv 160 (482)
T KOG2352|consen 157 YISV 160 (482)
T ss_pred EEEE
Confidence 7664
No 360
>PRK01581 speE spermidine synthase; Validated
Probab=92.94 E-value=0.45 Score=48.30 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHc--------C----CCceeeecccCC-CCCCCCCccEEEeCCccccccc-----CCCchhhhhccccc
Q 017983 7 DEHEAQIQFALER--------G----IPAILSVIGTQK-LTFPDDAYDLIHCARCRVHWDA-----QGGKPLLELNRILR 68 (363)
Q Consensus 7 D~~~~qvq~A~er--------g----~p~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~-----~~~~~l~E~~RVLr 68 (363)
|+++.+++.|++. + -.+.+...|+.. |+-.++.||+|++... -+... ....++..+.|.|+
T Consensus 181 EIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~Lk 259 (374)
T PRK01581 181 DLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLT 259 (374)
T ss_pred eCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcC
Confidence 7899999999962 1 124444555433 5556788999998631 11110 01248899999999
Q ss_pred CCeEEEEEeC
Q 017983 69 PGGFFIWSAT 78 (363)
Q Consensus 69 PGG~~~~s~~ 78 (363)
|||.|+....
T Consensus 260 PgGV~V~Qs~ 269 (374)
T PRK01581 260 EDGAFVCQSN 269 (374)
T ss_pred CCcEEEEecC
Confidence 9999988643
No 361
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.90 E-value=1.1 Score=41.49 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=64.8
Q ss_pred CceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-----chHHHHHhcCc-eeee-ccccccCCCCC-CCcceeeec
Q 017983 221 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-----DTLSIIFDRGL-IGMY-HDWCESFNTYP-RTYDLLHSS 289 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-----~~L~~a~~Rgl-~~~~-~d~~e~~lpfp-~sFDlVh~~ 289 (363)
...+|++|||+|.....|+.. ++. ...+|.. .+++-|...+. +.++ .|.. .... ++.|+++-+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~---~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~---~~l~~~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQAL---YLATDINPEALEATLETARCNRVHIDVVRTDLL---SGLRNESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCce---EEEecCCHHHHHHHHHHHHhcCCccceeehhHH---hhhccCCccEEEEC
Confidence 568999999999888888764 222 2344544 24454544432 2222 2211 1112 555555433
Q ss_pred c--------------cccccc----ccCCHHHHHHHHhHhccCCeEEEEEcCHH-HHHHHHHHHHhCCceeeee
Q 017983 290 F--------------LLSDVT----QRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTNIY 344 (363)
Q Consensus 290 ~--------------~l~~~~----~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~~~ 344 (363)
- .-..|. -+.-+..+|..+.-+|-|-|.+++--... -..+|-++.+.-.|.+++.
T Consensus 118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIA 191 (209)
T ss_pred CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEE
Confidence 1 111121 11114677888889999999998864332 2344555666777765554
No 362
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=92.90 E-value=0.044 Score=49.52 Aligned_cols=43 Identities=14% Similarity=0.373 Sum_probs=32.6
Q ss_pred CCccEEEeCCcccccc-------cC---CCchhhhhcccccCCeEEEEEeCCC
Q 017983 38 DAYDLIHCARCRVHWD-------AQ---GGKPLLELNRILRPGGFFIWSATPV 80 (363)
Q Consensus 38 ~sFD~v~cs~~~~~~~-------~~---~~~~l~E~~RVLrPGG~~~~s~~~~ 80 (363)
++||.+.|..+..|.- -| +-+.++++.|||||||.|++++|..
T Consensus 62 ~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 62 GSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred ccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 6899998866665541 01 1258899999999999999999953
No 363
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=92.70 E-value=0.33 Score=43.98 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=57.3
Q ss_pred cCCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCC----------Cchhhhhccccc
Q 017983 5 PKDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG----------GKPLLELNRILR 68 (363)
Q Consensus 5 p~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~----------~~~l~E~~RVLr 68 (363)
-.|+++.+|+.|++. |+. +.+.+.++..||+++++||.|+|.. ||-..- ..++.|+.|||+
T Consensus 66 g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~ 142 (179)
T PF01170_consen 66 GSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLK 142 (179)
T ss_dssp EEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHST
T ss_pred ecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCC
Confidence 468888999888755 554 5666778999999999999999942 332110 146899999999
Q ss_pred CCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983 69 PGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARS 109 (363)
Q Consensus 69 PGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~ 109 (363)
|...++++.. ..++.+....-|+....+
T Consensus 143 ~~~v~l~~~~-------------~~~~~~~~~~~~~~~~~~ 170 (179)
T PF01170_consen 143 PRAVFLTTSN-------------RELEKALGLKGWRKRKLY 170 (179)
T ss_dssp TCEEEEEESC-------------CCHHHHHTSTTSEEEEEE
T ss_pred CCEEEEEECC-------------HHHHHHhcchhhceEEEE
Confidence 9555555543 123444555566666544
No 364
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=92.57 E-value=0.12 Score=50.11 Aligned_cols=43 Identities=23% Similarity=0.485 Sum_probs=36.9
Q ss_pred CCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeC
Q 017983 36 PDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 36 pd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
..+-||+|+|.-+++.+... ..+++..++..|+|||+|++...
T Consensus 199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 55789999999999988753 35799999999999999999755
No 365
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=92.45 E-value=0.93 Score=45.48 Aligned_cols=107 Identities=16% Similarity=0.257 Sum_probs=54.5
Q ss_pred eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHH----hcCc--eeeeccccccCCC---------------CC
Q 017983 223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIF----DRGL--IGMYHDWCESFNT---------------YP 280 (363)
Q Consensus 223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~----~Rgl--~~~~~d~~e~~lp---------------fp 280 (363)
+|||+-||+|+|+..|++....| .+++.. ++++.|. ..|+ +..+...++.... ..
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V---~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~ 275 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKV---IGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK 275 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEE---EEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred cEEEEeecCCHHHHHHHhhCCeE---EEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence 79999999999999999876554 444544 4554443 3343 2222211221111 11
Q ss_pred -CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc-CHHHHHHHHHHHHhCCceee
Q 017983 281 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWSTN 342 (363)
Q Consensus 281 -~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~~~ 342 (363)
..+|+|+.. |.+.++...+.+. +.++.-.++||= .......++.|.+ .|++.
T Consensus 276 ~~~~d~vilD------PPR~G~~~~~~~~--~~~~~~ivYvSCnP~tlaRDl~~L~~--~y~~~ 329 (352)
T PF05958_consen 276 SFKFDAVILD------PPRAGLDEKVIEL--IKKLKRIVYVSCNPATLARDLKILKE--GYKLE 329 (352)
T ss_dssp CTTESEEEE---------TT-SCHHHHHH--HHHSSEEEEEES-HHHHHHHHHHHHC--CEEEE
T ss_pred hcCCCEEEEc------CCCCCchHHHHHH--HhcCCeEEEEECCHHHHHHHHHHHhh--cCEEE
Confidence 257777654 3344443333333 235666788874 4445556666654 46543
No 366
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=92.42 E-value=0.16 Score=49.16 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983 7 DEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 7 D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s 76 (363)
+.|..|...=.+||.. +.+.....-.+..||+|.|-=.+ .=.+++...|.+|++.|+|+|.++++
T Consensus 123 E~S~~Mr~rL~~kg~~----vl~~~~w~~~~~~fDvIscLNvL-DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 123 EASPPMRWRLSKKGFT----VLDIDDWQQTDFKFDVISCLNVL-DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred cCCHHHHHHHHhCCCe----EEehhhhhccCCceEEEeehhhh-hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 5677787777788974 33333333345689999994322 33445678999999999999999998
No 367
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=92.37 E-value=0.37 Score=44.69 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=51.2
Q ss_pred CCCCHHHHHHHH----HcCCC--ceeeecccCCCCCCCCCccEEEe-----CCccccc--ccCCCchhhhhcccccCCeE
Q 017983 6 KDEHEAQIQFAL----ERGIP--AILSVIGTQKLTFPDDAYDLIHC-----ARCRVHW--DAQGGKPLLELNRILRPGGF 72 (363)
Q Consensus 6 ~D~~~~qvq~A~----erg~p--~~~~~~~~~~LPfpd~sFD~v~c-----s~~~~~~--~~~~~~~l~E~~RVLrPGG~ 72 (363)
-|-|+..|..|. .+|.+ +.+.+++...-.|-.+.||+|+= +..+.+- ......++.-+.+.|+|||.
T Consensus 97 vDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gi 176 (227)
T KOG1271|consen 97 VDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGI 176 (227)
T ss_pred cccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcE
Confidence 466777777664 34888 77788886666888899999974 2222221 11123577888999999999
Q ss_pred EEEEeC
Q 017983 73 FIWSAT 78 (363)
Q Consensus 73 ~~~s~~ 78 (363)
|++++=
T Consensus 177 fvItSC 182 (227)
T KOG1271|consen 177 FVITSC 182 (227)
T ss_pred EEEEec
Confidence 999865
No 368
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.27 E-value=0.51 Score=48.87 Aligned_cols=108 Identities=17% Similarity=0.179 Sum_probs=62.8
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-c-hHHHHHhcCce--eeeccccccCCCC--C-CCcceeeecccc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-D-TLSIIFDRGLI--GMYHDWCESFNTY--P-RTYDLLHSSFLL 292 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~-~L~~a~~Rgl~--~~~~d~~e~~lpf--p-~sFDlVh~~~~l 292 (363)
+..+|||+=||.|+|+..|+++...|..+..+..+ + .-..|..-|+. ......++.+.+= . ..||.|+..
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD--- 369 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD--- 369 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC---
Confidence 34699999999999999999765444444333322 2 22233333432 2222223433332 2 578998875
Q ss_pred ccccccCCHH-HHHHHHhHhccCCeEEEEEcCHHHH-HHHHHHH
Q 017983 293 SDVTQRCDIA-DVAVEMDRILRPGGYVLVQDTLEMI-NKLKPVL 334 (363)
Q Consensus 293 ~~~~~~~~~~-~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~l~ 334 (363)
+.+.++. .+++++.+ ++|-..++||=....+ ..++.|.
T Consensus 370 ---PPR~G~~~~~lk~l~~-~~p~~IvYVSCNP~TlaRDl~~L~ 409 (432)
T COG2265 370 ---PPRAGADREVLKQLAK-LKPKRIVYVSCNPATLARDLAILA 409 (432)
T ss_pred ---CCCCCCCHHHHHHHHh-cCCCcEEEEeCCHHHHHHHHHHHH
Confidence 3455555 55666555 5788899998655543 4444444
No 369
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=92.26 E-value=0.091 Score=50.69 Aligned_cols=48 Identities=21% Similarity=0.350 Sum_probs=36.7
Q ss_pred cCCCCCCC-----CCccEEEeCCcccccccCC---CchhhhhcccccCCeEEEEEe
Q 017983 30 TQKLTFPD-----DAYDLIHCARCRVHWDAQG---GKPLLELNRILRPGGFFIWSA 77 (363)
Q Consensus 30 ~~~LPfpd-----~sFD~v~cs~~~~~~~~~~---~~~l~E~~RVLrPGG~~~~s~ 77 (363)
++.-|++. ..||+|+++.|+.--..+. ..+++-+.+.|||||.|++.+
T Consensus 144 ~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 144 TQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp TSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 34445544 3599999999998776553 468899999999999999973
No 370
>PRK03612 spermidine synthase; Provisional
Probab=92.11 E-value=0.32 Score=51.32 Aligned_cols=71 Identities=18% Similarity=0.107 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHcC-----------CC-ceeeecccCC-CCCCCCCccEEEeCCcccccccCC-----Cchhhhhccccc
Q 017983 7 DEHEAQIQFALERG-----------IP-AILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQG-----GKPLLELNRILR 68 (363)
Q Consensus 7 D~~~~qvq~A~erg-----------~p-~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~~-----~~~l~E~~RVLr 68 (363)
|+++..++.|++.- -| +.+...|+.. +...+++||+|++... .++.... ..+++++.|.||
T Consensus 328 Eid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~ 406 (521)
T PRK03612 328 DLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLP-DPSNPALGKLYSVEFYRLLKRRLA 406 (521)
T ss_pred ECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCC-CCCCcchhccchHHHHHHHHHhcC
Confidence 77899999998831 12 3445556543 4444579999998632 2321111 147889999999
Q ss_pred CCeEEEEEeC
Q 017983 69 PGGFFIWSAT 78 (363)
Q Consensus 69 PGG~~~~s~~ 78 (363)
|||.+++...
T Consensus 407 pgG~lv~~~~ 416 (521)
T PRK03612 407 PDGLLVVQST 416 (521)
T ss_pred CCeEEEEecC
Confidence 9999998754
No 371
>PRK04457 spermidine synthase; Provisional
Probab=91.90 E-value=0.57 Score=45.03 Aligned_cols=70 Identities=11% Similarity=0.073 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHc-CCC-----ceeeecccCC-CCCCCCCccEEEeCCc-cccccc--CCCchhhhhcccccCCeEEEEE
Q 017983 7 DEHEAQIQFALER-GIP-----AILSVIGTQK-LTFPDDAYDLIHCARC-RVHWDA--QGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 7 D~~~~qvq~A~er-g~p-----~~~~~~~~~~-LPfpd~sFD~v~cs~~-~~~~~~--~~~~~l~E~~RVLrPGG~~~~s 76 (363)
|+++..++.|++. +.+ +.+...|+.. ++-..++||+|++... ....+. .-..++.++.++|+|||.|++-
T Consensus 97 Eidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 97 EINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred ECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 6788999999886 332 3444455322 3323368999997421 111111 1147899999999999999985
No 372
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=91.88 E-value=0.53 Score=43.43 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=59.3
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----C---ceeeeccccccCCCCC---CCcceeeec
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----G---LIGMYHDWCESFNTYP---RTYDLLHSS 289 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----g---l~~~~~d~~e~~lpfp---~sFDlVh~~ 289 (363)
..++||+=+|+|.++.+-+.+++.- ++-++.+ ....++.+- + -..++...+...|+-. +.||+|+..
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRGA~~--~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRGAAR--VVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCCCce--EEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 3599999999999999999988653 3444444 333332222 2 2334443333344444 349999987
Q ss_pred cccccccccCCH--HHHH--HHHhHhccCCeEEEEEcCHH
Q 017983 290 FLLSDVTQRCDI--ADVA--VEMDRILRPGGYVLVQDTLE 325 (363)
Q Consensus 290 ~~l~~~~~~~~~--~~~L--~Em~RVLRPGG~lii~D~~~ 325 (363)
..+. .+.. +..+ .+-...|+|||.+++-...+
T Consensus 122 ---PPy~-~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 122 ---PPYA-KGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred ---CCCc-cchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 3332 1122 2223 33668899999999875544
No 373
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=91.56 E-value=0.069 Score=45.19 Aligned_cols=59 Identities=14% Similarity=0.312 Sum_probs=35.8
Q ss_pred cceeeeccccc--cccc-cCCHHHHHHHHhHhccCCeEEEEEcCH--------HHHHHHHHHHHhCCcee
Q 017983 283 YDLLHSSFLLS--DVTQ-RCDIADVAVEMDRILRPGGYVLVQDTL--------EMINKLKPVLHSLQWST 341 (363)
Q Consensus 283 FDlVh~~~~l~--~~~~-~~~~~~~L~Em~RVLRPGG~lii~D~~--------~~~~~i~~l~~~l~W~~ 341 (363)
||+|.|-.+-- |+.. .+++..++.-|.+.|||||.+++--.. .....+.+-.+++++..
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP 71 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRP 71 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----G
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEECh
Confidence 89999866543 5542 245788999999999999999996431 12344555556666543
No 374
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=91.32 E-value=0.69 Score=44.62 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=63.4
Q ss_pred ccccCCCCCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc--chHHHHHhcC-ceeeeccccccCCCCC-----C
Q 017983 213 GLAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP--DTLSIIFDRG-LIGMYHDWCESFNTYP-----R 281 (363)
Q Consensus 213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s--~~L~~a~~Rg-l~~~~~d~~e~~lpfp-----~ 281 (363)
++.|++++ +||=+|++.|.......+- ...|-.|.=+.-+ +.+..|.+|- ++.++.| ++.|+. .
T Consensus 151 nihikpGs--KVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiED---ArhP~KYRmlVg 225 (317)
T KOG1596|consen 151 NIHIKPGS--KVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIED---ARHPAKYRMLVG 225 (317)
T ss_pred ceeecCCc--eEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeecc---CCCchheeeeee
Confidence 45567665 9999999999877666652 1122122222223 4667788884 4677776 356644 3
Q ss_pred CcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 282 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 282 sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
-.|+|++ .+..++...-+.+-..-.||+||.|+|+-
T Consensus 226 mVDvIFa-----Dvaqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 226 MVDVIFA-----DVAQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eEEEEec-----cCCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 4455554 44444444456778888999999999983
No 375
>PRK07402 precorrin-6B methylase; Provisional
Probab=91.12 E-value=0.33 Score=43.99 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHc----CCC-ceeeecccCC-CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 7 DEHEAQIQFALER----GIP-AILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p-~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
|.++.+++.|.++ |+. +.+...++.. ++.-...+|.++... ..+...++.++.|+|+|||+|++..+
T Consensus 71 D~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 71 ERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred eCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 7888888888763 554 3444444432 333334467765421 11224789999999999999999976
No 376
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=90.98 E-value=0.24 Score=42.88 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=29.1
Q ss_pred CCCceEEEecccccHHHHHhhc-----CCCeEEEEeecCCc-chHHHHHhc
Q 017983 219 SSVRNVMDMNASYGGFAAALID-----QPLWVMNVVPIDAP-DTLSIIFDR 263 (363)
Q Consensus 219 ~~~r~VLDvGCG~G~faa~L~~-----~~v~v~~v~~~d~s-~~L~~a~~R 263 (363)
.+...|+|+|||-|.++..|+. . ....|.++|.. ..++.+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence 4567999999999999998887 3 22345566655 444444443
No 377
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=90.85 E-value=0.27 Score=45.91 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=38.3
Q ss_pred CCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCC--eEEEEEeCC
Q 017983 33 LTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPG--GFFIWSATP 79 (363)
Q Consensus 33 LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPG--G~~~~s~~~ 79 (363)
=|+|. +|+++.+.++|+|+++. ...|+.+.+.|+|| |++++....
T Consensus 154 ~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 154 DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 57786 99999999999998753 57899999999999 999998653
No 378
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=90.84 E-value=0.23 Score=47.78 Aligned_cols=61 Identities=18% Similarity=0.432 Sum_probs=40.6
Q ss_pred CCCCCCCccEEEeCC----cccccccCC-CchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHH
Q 017983 33 LTFPDDAYDLIHCAR----CRVHWDAQG-GKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNL 97 (363)
Q Consensus 33 LPfpd~sFD~v~cs~----~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l 97 (363)
|-+-...||+|.|-- +-..|.+++ ..++.-+.|.|.|||+|++... +|.-....-+.++.+
T Consensus 160 l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ----pWksY~kaar~~e~~ 225 (288)
T KOG2899|consen 160 LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ----PWKSYKKAARRSEKL 225 (288)
T ss_pred hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC----chHHHHHHHHHHHHh
Confidence 445677899999932 223455543 4689999999999999999744 455544443444443
No 379
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=90.52 E-value=0.56 Score=46.15 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCC
Q 017983 7 DEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYR 82 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~ 82 (363)
|+.+..++.|++. |+...+.+.. ...++...||+|++..-... ....+..+.++|+|||+|++|+=...
T Consensus 191 DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~~~v----L~~l~~~~~~~l~~~G~lIlSGIl~~- 263 (295)
T PF06325_consen 191 DIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANILADV----LLELAPDIASLLKPGGYLILSGILEE- 263 (295)
T ss_dssp ESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES-HHH----HHHHHHHCHHHEEEEEEEEEEEEEGG-
T ss_pred cCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCCHHH----HHHHHHHHHHhhCCCCEEEEccccHH-
Confidence 5666666666654 7766554432 23455699999999754322 12467788999999999999976321
Q ss_pred CChhhHHHHHHHHHHHhhcceEEEEEec
Q 017983 83 HDDRHRSVWNAMVNLTESMCWKAVARSV 110 (363)
Q Consensus 83 ~~~e~~~~~~~~~~l~~~~cw~~~~~~~ 110 (363)
....+.+..+. .+++.....
T Consensus 264 -------~~~~v~~a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 264 -------QEDEVIEAYKQ-GFELVEERE 283 (295)
T ss_dssp -------GHHHHHHHHHT-TEEEEEEEE
T ss_pred -------HHHHHHHHHHC-CCEEEEEEE
Confidence 12334444455 888776554
No 380
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=90.45 E-value=0.34 Score=47.14 Aligned_cols=116 Identities=21% Similarity=0.263 Sum_probs=63.6
Q ss_pred CCCCCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHH---HHHhc-Cc--eeee-ccccccCCC-CC-CCc
Q 017983 217 NWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLS---IIFDR-GL--IGMY-HDWCESFNT-YP-RTY 283 (363)
Q Consensus 217 ~~~~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~---~a~~R-gl--~~~~-~d~~e~~lp-fp-~sF 283 (363)
.+.+..+|||++||.|+-+..|++. ... +++.|.+ +-+. ...+| |. +.+. +|. ....+ ++ ..|
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~---i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~-~~~~~~~~~~~f 157 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGE---IVANDISPKRLKRLKENLKRLGVFNVIVINADA-RKLDPKKPESKF 157 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSE---EEEEESSHHHHHHHHHHHHHTT-SSEEEEESHH-HHHHHHHHTTTE
T ss_pred cccccccccccccCCCCceeeeeecccchhH---HHHhccCHHHHHHHHHHHHhcCCceEEEEeecc-cccccccccccc
Confidence 3344568999999999866666542 223 5666766 3332 22223 43 2233 332 21122 23 459
Q ss_pred ceeee----cc--cccccc------ccCCH-------HHHHHHHhHhc----cCCeEEEEEcC----HHHHHHHHHHHHh
Q 017983 284 DLLHS----SF--LLSDVT------QRCDI-------ADVAVEMDRIL----RPGGYVLVQDT----LEMINKLKPVLHS 336 (363)
Q Consensus 284 DlVh~----~~--~l~~~~------~~~~~-------~~~L~Em~RVL----RPGG~lii~D~----~~~~~~i~~l~~~ 336 (363)
|.|.. +. ++..-+ ...++ .++|....+.| ||||+++.+.= .+.-..|+.++++
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~ 237 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKR 237 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHH
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 99985 22 222111 01111 46788899999 99999999842 2233455555544
No 381
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=90.38 E-value=0.68 Score=50.68 Aligned_cols=79 Identities=11% Similarity=0.033 Sum_probs=41.4
Q ss_pred EEeecCCc-chHHHHHhc----Cc---eeee-ccccccCCCCC-CCcceeeeccccc-cccccCCHHHHHHH---HhHhc
Q 017983 247 NVVPIDAP-DTLSIIFDR----GL---IGMY-HDWCESFNTYP-RTYDLLHSSFLLS-DVTQRCDIADVAVE---MDRIL 312 (363)
Q Consensus 247 ~v~~~d~s-~~L~~a~~R----gl---~~~~-~d~~e~~lpfp-~sFDlVh~~~~l~-~~~~~~~~~~~L~E---m~RVL 312 (363)
.++++|.. .++..|.+. |+ +.+. .|+.+...+++ ++||+|+++==+- .+....++..+-.+ +.|.+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 47888887 777665444 44 2232 33322222344 6899999981110 11111223334344 44444
Q ss_pred cCCeEEEEEcCHH
Q 017983 313 RPGGYVLVQDTLE 325 (363)
Q Consensus 313 RPGG~lii~D~~~ 325 (363)
.||+.+++.....
T Consensus 338 ~~g~~~~llt~~~ 350 (702)
T PRK11783 338 FGGWNAALFSSSP 350 (702)
T ss_pred CCCCeEEEEeCCH
Confidence 4999887766544
No 382
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=90.22 E-value=0.84 Score=43.40 Aligned_cols=96 Identities=21% Similarity=0.359 Sum_probs=63.2
Q ss_pred CCCceEEEecccccHHHHHhhcCCC---eEEEEeecCCc-chHHHHHhcCc------eeeeccccccCCCCC-CCcceee
Q 017983 219 SSVRNVMDMNASYGGFAAALIDQPL---WVMNVVPIDAP-DTLSIIFDRGL------IGMYHDWCESFNTYP-RTYDLLH 287 (363)
Q Consensus 219 ~~~r~VLDvGCG~G~faa~L~~~~v---~v~~v~~~d~s-~~L~~a~~Rgl------~~~~~d~~e~~lpfp-~sFDlVh 287 (363)
.+.++||.||=|.|...-.+.+++. |++ ..+ .-++..++-|. +-....|-...-..| +.||-|.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~Ii-----E~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWII-----EAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEE-----ecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeE
Confidence 3457999999999988888877643 332 222 45555555553 333445532223477 8999998
Q ss_pred eccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
-.-.-.|+ +++..+-+-+.|.|||||.+-...
T Consensus 175 yDTy~e~y---Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 175 YDTYSELY---EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred eechhhHH---HHHHHHHHHHhhhcCCCceEEEec
Confidence 65332444 346678889999999999987763
No 383
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=90.15 E-value=0.63 Score=44.72 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHcC---------CCceeeecccCC-CCCCCCCccEEEeCCcccccccC----CCchhhhhcccccCCeE
Q 017983 7 DEHEAQIQFALERG---------IPAILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQ----GGKPLLELNRILRPGGF 72 (363)
Q Consensus 7 D~~~~qvq~A~erg---------~p~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~----~~~~l~E~~RVLrPGG~ 72 (363)
|+++..++.|++.- -.+.+...++.. +.-..+.||+|++.... +.... ...++..+.+.|+|||.
T Consensus 103 eid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~ 181 (270)
T TIGR00417 103 DIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTD-PVGPAETLFTKEFYELLKKALNEDGI 181 (270)
T ss_pred eCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCC-CCCcccchhHHHHHHHHHHHhCCCcE
Confidence 67788888887741 112333334322 33335799999985431 22211 12577899999999999
Q ss_pred EEEEeC
Q 017983 73 FIWSAT 78 (363)
Q Consensus 73 ~~~s~~ 78 (363)
+++...
T Consensus 182 lv~~~~ 187 (270)
T TIGR00417 182 FVAQSE 187 (270)
T ss_pred EEEcCC
Confidence 999744
No 384
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=89.87 E-value=0.49 Score=45.53 Aligned_cols=89 Identities=15% Similarity=0.259 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHc----CCC--ceeeecccCCC--CCCCCCccEEEeCCccccccc--------------------CCCc
Q 017983 7 DEHEAQIQFALER----GIP--AILSVIGTQKL--TFPDDAYDLIHCARCRVHWDA--------------------QGGK 58 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p--~~~~~~~~~~L--Pfpd~sFD~v~cs~~~~~~~~--------------------~~~~ 58 (363)
++.+...++|++. +.. +.+...|...+ +++-.+||+|+|.- |+.+ +...
T Consensus 75 Eiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP---Pyf~~~~~~~~~~~~~~Ar~e~~~~le~ 151 (248)
T COG4123 75 EIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP---PYFKQGSRLNENPLRAIARHEITLDLED 151 (248)
T ss_pred EeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC---CCCCCccccCcChhhhhhhhhhcCCHHH
Confidence 4567777777654 222 44555564443 34445899999942 1111 1123
Q ss_pred hhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEE
Q 017983 59 PLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVA 107 (363)
Q Consensus 59 ~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~ 107 (363)
.++=+.++|||||+|++.-|+ +....+-++++++.|..-.
T Consensus 152 ~i~~a~~~lk~~G~l~~V~r~---------erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 152 LIRAAAKLLKPGGRLAFVHRP---------ERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred HHHHHHHHccCCCEEEEEecH---------HHHHHHHHHHHhcCCCceE
Confidence 556667899999999999884 3355667777777775543
No 385
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=89.23 E-value=0.9 Score=47.34 Aligned_cols=100 Identities=20% Similarity=0.251 Sum_probs=63.8
Q ss_pred CCceEEEeccccc--HHHHHhhcCCCeEEEEeecCCc-chHHHHHh--cC-c-e------e-eeccccccCCCCC--CCc
Q 017983 220 SVRNVMDMNASYG--GFAAALIDQPLWVMNVVPIDAP-DTLSIIFD--RG-L-I------G-MYHDWCESFNTYP--RTY 283 (363)
Q Consensus 220 ~~r~VLDvGCG~G--~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~--Rg-l-~------~-~~~d~~e~~lpfp--~sF 283 (363)
..+.++|+|-|.| +.++.+.-+. +.-.++-+|.+ .|+..+.. |+ - + . ++++ .++|-+ +-|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r---~~~pi~~~~~y 275 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR---QRLPIDIKNGY 275 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc---ccCCCCcccce
Confidence 3467888887766 4555554432 12234444555 55543321 12 0 1 1 3343 578887 669
Q ss_pred ceeeeccccccccccCCHHHHHHHHhH-hccCCeEEEEEcC
Q 017983 284 DLLHSSFLLSDVTQRCDIADVAVEMDR-ILRPGGYVLVQDT 323 (363)
Q Consensus 284 DlVh~~~~l~~~~~~~~~~~~L~Em~R-VLRPGG~lii~D~ 323 (363)
|+|+|++.++++.+...-.++..+..| ..||||+++|.+.
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 999999999999877666667777655 6899999999865
No 386
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=89.03 E-value=1.8 Score=44.65 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=59.1
Q ss_pred ccCCCCCceEEEecccccH---HHHHhhc-CCCeEEEEeecCCc-chHH----HHHhcCc---eeeeccccccCCC---C
Q 017983 215 AINWSSVRNVMDMNASYGG---FAAALID-QPLWVMNVVPIDAP-DTLS----IIFDRGL---IGMYHDWCESFNT---Y 279 (363)
Q Consensus 215 ~i~~~~~r~VLDvGCG~G~---faa~L~~-~~v~v~~v~~~d~s-~~L~----~a~~Rgl---~~~~~d~~e~~lp---f 279 (363)
++.+-...+||||.|-.|+ +.|+|.+ .|+ |.+.|.. +-+. .+..-|. +.+.+|.- ..| |
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~----I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~--ef~~~~~ 309 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGV----IFANDSNENRLKSLKANLHRLGVTNTIVSNYDGR--EFPEKEF 309 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCce----EEecccchHHHHHHHHHHHHhCCCceEEEccCcc--ccccccc
Confidence 3556667899999999996 5555544 443 4566654 3332 2333354 33344421 233 5
Q ss_pred CCCcceee----ecc--ccccccccCC-------------HHHHHHHHhHhccCCeEEEEEc
Q 017983 280 PRTYDLLH----SSF--LLSDVTQRCD-------------IADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 280 p~sFDlVh----~~~--~l~~~~~~~~-------------~~~~L~Em~RVLRPGG~lii~D 322 (363)
+.+||-|. |+. +++--+..+. -.++|.--...+||||+++.+.
T Consensus 310 ~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 310 PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 57999997 555 3331100000 0346666677899999999985
No 387
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=88.73 E-value=0.41 Score=40.58 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=21.2
Q ss_pred eEEEecccccHHHHHhhcCCC--eEEEEeecC
Q 017983 223 NVMDMNASYGGFAAALIDQPL--WVMNVVPID 252 (363)
Q Consensus 223 ~VLDvGCG~G~faa~L~~~~v--~v~~v~~~d 252 (363)
+|||+|||.|.++..++..+. .+..+.|..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~ 32 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP 32 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCH
Confidence 589999999999998887542 344444443
No 388
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=88.66 E-value=0.14 Score=41.52 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=32.5
Q ss_pred EEecccccHHHHHhhcC----C-CeEEEEeecCCc-chHHHHHhcCc---eeeeccccccCC-CCC-CCcceeeeccccc
Q 017983 225 MDMNASYGGFAAALIDQ----P-LWVMNVVPIDAP-DTLSIIFDRGL---IGMYHDWCESFN-TYP-RTYDLLHSSFLLS 293 (363)
Q Consensus 225 LDvGCG~G~faa~L~~~----~-v~v~~v~~~d~s-~~L~~a~~Rgl---~~~~~d~~e~~l-pfp-~sFDlVh~~~~l~ 293 (363)
|.+|+..|..+..|++. + ..+..+.+.... ...+.+.+.++ +..+.......+ .++ +.||+++... .
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg--~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG--D 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--C
Confidence 57898899877776642 1 123334333311 12223333333 223322221112 255 8999999874 2
Q ss_pred cccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 294 DVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
| ........+..+.+.|+|||.+++-|
T Consensus 79 H--~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 H--SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C--CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 11234567888999999999988765
No 389
>PRK11524 putative methyltransferase; Provisional
Probab=88.63 E-value=0.38 Score=46.64 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=34.8
Q ss_pred eeecccCCC--CCCCCCccEEEeCC--cc--------ccccc-----CCCchhhhhcccccCCeEEEEEeC
Q 017983 25 LSVIGTQKL--TFPDDAYDLIHCAR--CR--------VHWDA-----QGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 25 ~~~~~~~~L--Pfpd~sFD~v~cs~--~~--------~~~~~-----~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
+...|+..+ .+++++||+|+++- .. ..|.. -....|.|+.|||||||.+++...
T Consensus 11 i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 11 IIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred EEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 444554332 57899999999942 10 00100 002488999999999999998744
No 390
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=88.54 E-value=0.42 Score=44.89 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=44.3
Q ss_pred CCCHHHHHHHH-HcCCC----------------ceeeecccCCCCCCC-CCccEEE--eCCcccccccCCCchhhhhccc
Q 017983 7 DEHEAQIQFAL-ERGIP----------------AILSVIGTQKLTFPD-DAYDLIH--CARCRVHWDAQGGKPLLELNRI 66 (363)
Q Consensus 7 D~~~~qvq~A~-erg~p----------------~~~~~~~~~~LPfpd-~sFD~v~--cs~~~~~~~~~~~~~l~E~~RV 66 (363)
|+|+..|+.|. |++.. +.+.+.|.-.|+-.+ +.||+|. .++|++|-. .......-+.++
T Consensus 66 Dls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~-~R~~Ya~~l~~l 144 (218)
T PF05724_consen 66 DLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPE-MRERYAQQLASL 144 (218)
T ss_dssp ES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GG-GHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHH-HHHHHHHHHHHH
Confidence 78899999984 44531 133444555555433 4799998 466777633 346799999999
Q ss_pred ccCCeEEEE
Q 017983 67 LRPGGFFIW 75 (363)
Q Consensus 67 LrPGG~~~~ 75 (363)
|||||.+++
T Consensus 145 l~p~g~~lL 153 (218)
T PF05724_consen 145 LKPGGRGLL 153 (218)
T ss_dssp EEEEEEEEE
T ss_pred hCCCCcEEE
Confidence 999999433
No 391
>PLN02366 spermidine synthase
Probab=88.38 E-value=1.1 Score=44.26 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHcC------C---CceeeecccCC-C-CCCCCCccEEEeCCcccccccC----CCchhhhhcccccCCe
Q 017983 7 DEHEAQIQFALERG------I---PAILSVIGTQK-L-TFPDDAYDLIHCARCRVHWDAQ----GGKPLLELNRILRPGG 71 (363)
Q Consensus 7 D~~~~qvq~A~erg------~---p~~~~~~~~~~-L-Pfpd~sFD~v~cs~~~~~~~~~----~~~~l~E~~RVLrPGG 71 (363)
|+.+..++.|++.- . .+.+...|+.. + ..+++.||+|++-. ..++... ...+++.+.|.|+|||
T Consensus 122 EiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgG 200 (308)
T PLN02366 122 EIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDS-SDPVGPAQELFEKPFFESVARALRPGG 200 (308)
T ss_pred ECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCc
Confidence 56778888887751 1 13444455422 1 23467899999853 2233211 1247899999999999
Q ss_pred EEEEEeC
Q 017983 72 FFIWSAT 78 (363)
Q Consensus 72 ~~~~s~~ 78 (363)
.++.-..
T Consensus 201 vlv~q~~ 207 (308)
T PLN02366 201 VVCTQAE 207 (308)
T ss_pred EEEECcC
Confidence 9987433
No 392
>PHA03411 putative methyltransferase; Provisional
Probab=88.12 E-value=0.77 Score=44.91 Aligned_cols=75 Identities=11% Similarity=0.109 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccC-------------------CCchhhhhccc
Q 017983 6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-------------------GGKPLLELNRI 66 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-------------------~~~~l~E~~RV 66 (363)
-|+++.+++.|+++--.+.+...++..++ .+++||+|++.-...|-... ...++..+.++
T Consensus 94 VDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~ 172 (279)
T PHA03411 94 VELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYF 172 (279)
T ss_pred EECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHhe
Confidence 38899999999887434566666766655 35789999996555442111 02466788899
Q ss_pred ccCCeEEEE--EeCCCC
Q 017983 67 LRPGGFFIW--SATPVY 81 (363)
Q Consensus 67 LrPGG~~~~--s~~~~~ 81 (363)
|+|+|.+.+ |+.|.|
T Consensus 173 L~p~G~~~~~yss~~~y 189 (279)
T PHA03411 173 IVPTGSAGFAYSGRPYY 189 (279)
T ss_pred ecCCceEEEEEeccccc
Confidence 999997655 455665
No 393
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=87.33 E-value=0.83 Score=42.58 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=19.9
Q ss_pred Ccceeeeccc-cccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 282 TYDLLHSSFL-LSDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 282 sFDlVh~~~~-l~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
.-|+|+++.. |. ..+...|.++..-||||-++|-+
T Consensus 122 ~AdvVf~Nn~~F~-----~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 122 DADVVFVNNTCFD-----PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp C-SEEEE--TTT------HHHHHHHHHHHTTS-TT-EEEES
T ss_pred CCCEEEEeccccC-----HHHHHHHHHHHhcCCCCCEEEEC
Confidence 4588988744 33 13456778888889988776543
No 394
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=87.31 E-value=1.6 Score=40.88 Aligned_cols=96 Identities=25% Similarity=0.201 Sum_probs=53.7
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHH-----HhcCc-eeeeccccccCCCCC-CCcceeeecccc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSII-----FDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLL 292 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a-----~~Rgl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l 292 (363)
..++|||+|+|.|--+.+-+..+.. .|+..|....+..+ ...|. +...|.. +-.. ..||++.++.+|
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d----~~g~~~~~Dl~LagDlf 152 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANGVSILFTHAD----LIGSPPAFDLLLAGDLF 152 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhccceeEEeecc----ccCCCcceeEEEeecee
Confidence 4579999999999543333322211 12233332111111 11222 5556642 3336 999999999887
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 324 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 324 (363)
- +...-..++.=.+|....|-.+++.|..
T Consensus 153 y---~~~~a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 153 Y---NHTEADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred c---CchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 5 2223345777556666667777777753
No 395
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=87.01 E-value=0.86 Score=47.70 Aligned_cols=77 Identities=16% Similarity=0.367 Sum_probs=48.6
Q ss_pred cCCCCHHHHHHHH---Hc-CCCc-eeeecccCCCC-CCCCCccEEE----eCCc---------ccccccC--------CC
Q 017983 5 PKDEHEAQIQFAL---ER-GIPA-ILSVIGTQKLT-FPDDAYDLIH----CARC---------RVHWDAQ--------GG 57 (363)
Q Consensus 5 p~D~~~~qvq~A~---er-g~p~-~~~~~~~~~LP-fpd~sFD~v~----cs~~---------~~~~~~~--------~~ 57 (363)
-.|+|..-++... +| |+.+ .+...++..++ ...+.||.|. ||-- ...|+.. ..
T Consensus 143 A~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~ 222 (470)
T PRK11933 143 ANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQR 222 (470)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHH
Confidence 3577766655554 33 8774 55566666652 3336799999 6521 1123211 12
Q ss_pred chhhhhcccccCCeEEEEEeCCCC
Q 017983 58 KPLLELNRILRPGGFFIWSATPVY 81 (363)
Q Consensus 58 ~~l~E~~RVLrPGG~~~~s~~~~~ 81 (363)
..|..+.+.|||||++++|+=.+.
T Consensus 223 ~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 223 ELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred HHHHHHHHHcCCCcEEEEECCCCC
Confidence 577888999999999999976444
No 396
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=86.92 E-value=0.55 Score=42.32 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=19.2
Q ss_pred HHHHHHHHhHhccCCeEEEEE
Q 017983 301 IADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 301 ~~~~L~Em~RVLRPGG~lii~ 321 (363)
+...+.|+.|||||||.++|.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 577999999999999999886
No 397
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=86.06 E-value=0.56 Score=42.32 Aligned_cols=109 Identities=20% Similarity=0.278 Sum_probs=49.8
Q ss_pred ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeee-ccccccCCC-CC--CCcceeeec
Q 017983 222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMY-HDWCESFNT-YP--RTYDLLHSS 289 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~-~d~~e~~lp-fp--~sFDlVh~~ 289 (363)
+.|+|+.||.|+-+..++...-. |+++|.. ..++.++.- |. +..+ .|+-+ .++ +. ..||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~---Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~-~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDR---VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFE-LLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-E---EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHH-HGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCCe---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHH-HHhhccccccccEEEEC
Confidence 37999999999999999987533 4455555 344433222 32 3333 34322 222 22 238999975
Q ss_pred ---c--------ccc---cccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhC
Q 017983 290 ---F--------LLS---DVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSL 337 (363)
Q Consensus 290 ---~--------~l~---~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l 337 (363)
. .|. ++ .+-++.+++..+.++-+- .++..-.+.-+..+.+++..+
T Consensus 77 PPWGGp~Y~~~~~fdL~~~~-~p~~~~~l~~~~~~~t~n--v~l~LPRn~dl~ql~~~~~~l 135 (163)
T PF09445_consen 77 PPWGGPSYSKKDVFDLEKSM-QPFNLEDLLKAARKITPN--VVLFLPRNSDLNQLSQLTREL 135 (163)
T ss_dssp --BSSGGGGGSSSB-TTTSS-SS--HHHHHHHHHHH-S---EEEEEETTB-HHHHHHT----
T ss_pred CCCCCccccccCccCHHHcc-CCCCHHHHHHHHHhhCCC--EEEEeCCCCCHHHHHHHhccc
Confidence 1 111 11 122456666666666432 333444444556666665433
No 398
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=85.36 E-value=2.7 Score=41.27 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=41.6
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-------eeeeccccccCCCCC-CCcceeee
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-------IGMYHDWCESFNTYP-RTYDLLHS 288 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-------~~~~~d~~e~~lpfp-~sFDlVh~ 288 (363)
...||.+|-|||.++..|.+.+..| ++.... .|+....+|+. ..+++. .++--+ -.||.+++
T Consensus 59 tD~VLEvGPGTGnLT~~lLe~~kkV---vA~E~Dprmvael~krv~gtp~~~kLqV~~g---D~lK~d~P~fd~cVs 129 (315)
T KOG0820|consen 59 TDVVLEVGPGTGNLTVKLLEAGKKV---VAVEIDPRMVAELEKRVQGTPKSGKLQVLHG---DFLKTDLPRFDGCVS 129 (315)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCeE---EEEecCcHHHHHHHHHhcCCCccceeeEEec---ccccCCCcccceeec
Confidence 4699999999999999999987664 344443 57777777743 234442 133333 44777776
No 399
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=85.33 E-value=0.98 Score=42.64 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHc----CCC--ceeeecccCC-CC-----CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEE
Q 017983 7 DEHEAQIQFALER----GIP--AILSVIGTQK-LT-----FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFI 74 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p--~~~~~~~~~~-LP-----fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~ 74 (363)
|.++..++.|++. |+. +.+...++.. |+ .++.+||+|++-.-- +.-..++.++.|.|||||.++
T Consensus 100 D~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k----~~y~~~~~~~~~ll~~GG~ii 175 (234)
T PLN02781 100 DIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADK----PNYVHFHEQLLKLVKVGGIIA 175 (234)
T ss_pred ECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCH----HHHHHHHHHHHHhcCCCeEEE
Confidence 5566666666554 654 3444445422 33 235799999874211 112358889999999999998
Q ss_pred EE
Q 017983 75 WS 76 (363)
Q Consensus 75 ~s 76 (363)
+.
T Consensus 176 ~d 177 (234)
T PLN02781 176 FD 177 (234)
T ss_pred EE
Confidence 64
No 400
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=85.19 E-value=1 Score=41.37 Aligned_cols=66 Identities=24% Similarity=0.371 Sum_probs=42.3
Q ss_pred HHHHHHHcCCCceee-ecccCC-CC--CCCCCccEEEeCCcccccccC--------CCchhhhhcccccCCeEEEEEeC
Q 017983 12 QIQFALERGIPAILS-VIGTQK-LT--FPDDAYDLIHCARCRVHWDAQ--------GGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 12 qvq~A~erg~p~~~~-~~~~~~-LP--fpd~sFD~v~cs~~~~~~~~~--------~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
..+.+.++|+++... ..++.. |+ ++++++|.|+... --||+.. ...+|.++.|+|+|||.+.+.+.
T Consensus 57 a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 57 ALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF-PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp HHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred HHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC-CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 345555668875544 445655 33 6789999998743 2355431 12589999999999999999865
No 401
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=84.98 E-value=1.5 Score=41.54 Aligned_cols=67 Identities=21% Similarity=0.271 Sum_probs=49.4
Q ss_pred HHHHHHHHcCC-CceeeecccCCC-C--CCCCCccEEEeCCcccccccCC--------CchhhhhcccccCCeEEEEEeC
Q 017983 11 AQIQFALERGI-PAILSVIGTQKL-T--FPDDAYDLIHCARCRVHWDAQG--------GKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 11 ~qvq~A~erg~-p~~~~~~~~~~L-P--fpd~sFD~v~cs~~~~~~~~~~--------~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
..++.+.+.|+ .+.+...+|..+ + ++++|.|-|.-... -||+-.. ..+|.++.|+|+|||.|.+.+.
T Consensus 87 ~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP-DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 87 KALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP-DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred HHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 45667778899 788888886553 3 46669999986543 2664321 2589999999999999999865
No 402
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=84.85 E-value=4.1 Score=38.83 Aligned_cols=94 Identities=16% Similarity=0.073 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHc--CCCceeeecccC-CCCC-CCCCccEEEeCCccc--------------ccc-------cCC----
Q 017983 6 KDEHEAQIQFALER--GIPAILSVIGTQ-KLTF-PDDAYDLIHCARCRV--------------HWD-------AQG---- 56 (363)
Q Consensus 6 ~D~~~~qvq~A~er--g~p~~~~~~~~~-~LPf-pd~sFD~v~cs~~~~--------------~~~-------~~~---- 56 (363)
-|.++..++.|++. .....+...+.. .++- -.+.||+|++.-=.+ |.+ .+.
T Consensus 116 vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~ 195 (251)
T TIGR03704 116 ADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVL 195 (251)
T ss_pred EECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHH
Confidence 48889999888765 111244444533 2331 135799999853111 100 000
Q ss_pred CchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEE
Q 017983 57 GKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVAR 108 (363)
Q Consensus 57 ~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~ 108 (363)
..++..+.++|+|||.|++....- ....+..+.+...|+....
T Consensus 196 ~~i~~~a~~~L~~gG~l~l~~~~~---------~~~~v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 196 RRVAAGAPDWLAPGGHLLVETSER---------QAPLAVEAFARAGLIARVA 238 (251)
T ss_pred HHHHHHHHHhcCCCCEEEEEECcc---------hHHHHHHHHHHCCCCceee
Confidence 146667779999999999986621 1234555555555544443
No 403
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=84.81 E-value=0.7 Score=46.14 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=11.9
Q ss_pred CC-CCcceeeeccccccc
Q 017983 279 YP-RTYDLLHSSFLLSDV 295 (363)
Q Consensus 279 fp-~sFDlVh~~~~l~~~ 295 (363)
|| +|.|++|++.+||-+
T Consensus 103 fP~~Svh~~~Ss~alHWL 120 (334)
T PF03492_consen 103 FPSNSVHFGHSSYALHWL 120 (334)
T ss_dssp S-TT-EEEEEEES-TTB-
T ss_pred CCCCceEEEEEechhhhc
Confidence 78 999999999999854
No 404
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=84.80 E-value=2.9 Score=40.56 Aligned_cols=66 Identities=14% Similarity=0.205 Sum_probs=39.5
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcC----ceeeeccccccCCCCCC--Ccceeeec
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRG----LIGMYHDWCESFNTYPR--TYDLLHSS 289 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rg----l~~~~~d~~e~~lpfp~--sFDlVh~~ 289 (363)
..+||.||+|.|.++..|+++...+. .+-.|. .+++.-.++- -+.+++..+- ...|++ .++.|+++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~-aiEiD~-~l~~~L~~~~~~~~n~~vi~~DaL-k~d~~~l~~~~~vVaN 102 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVT-AIEIDR-RLAEVLKERFAPYDNLTVINGDAL-KFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEE-EEEeCH-HHHHHHHHhcccccceEEEeCchh-cCcchhhcCCCEEEEc
Confidence 57999999999999999999765432 223342 3444444442 1344443221 234443 67888876
No 405
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=83.98 E-value=4.4 Score=40.44 Aligned_cols=99 Identities=19% Similarity=0.117 Sum_probs=56.9
Q ss_pred ceEEEecccc-cHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeecc-----ccccCCCC-C-CCcceeeeccc
Q 017983 222 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHD-----WCESFNTY-P-RTYDLLHSSFL 291 (363)
Q Consensus 222 r~VLDvGCG~-G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d-----~~e~~lpf-p-~sFDlVh~~~~ 291 (363)
.+||..|||. |.+++.+++ .+.. .+..++.+ ++++.+.+.+-..++.. +.+....+ + +.+|+|+-.-.
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~--~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg 263 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAE--RVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAVG 263 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECCC
Confidence 5899999987 777777766 3432 24444554 67887777732122211 11111122 2 47998876421
Q ss_pred c-----------ccc-cccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 292 L-----------SDV-TQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 292 l-----------~~~-~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
- .|. ....+....+.++.|.|+|||.+++..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 264 MEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 1 111 001122458999999999999998864
No 406
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=83.96 E-value=2.8 Score=40.48 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983 7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV 80 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~ 80 (363)
|.++.-.+.|++. |+. +.+...|....-+++ .||+|+-- .+ ++-.++..+..+|+|||.+++-.|-+
T Consensus 126 E~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~LD-----mp-~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 126 EIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFLD-----LP-DPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred EecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEEc-----CC-ChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 5566667777654 433 344445555556665 99999763 33 34569999999999999999998854
Q ss_pred CCCChhhHHHHHHHHHHHhhcceEEEE
Q 017983 81 YRHDDRHRSVWNAMVNLTESMCWKAVA 107 (363)
Q Consensus 81 ~~~~~e~~~~~~~~~~l~~~~cw~~~~ 107 (363)
. ++.+.++.|-+. ||.-+.
T Consensus 199 e-------Qv~kt~~~l~~~-g~~~ie 217 (256)
T COG2519 199 E-------QVEKTVEALRER-GFVDIE 217 (256)
T ss_pred H-------HHHHHHHHHHhc-Cccchh
Confidence 4 666667777666 775443
No 407
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=83.86 E-value=0.18 Score=42.66 Aligned_cols=38 Identities=32% Similarity=0.769 Sum_probs=26.2
Q ss_pred ccEEEeCCccccc-----ccCC-CchhhhhcccccCCeEEEEEeC
Q 017983 40 YDLIHCARCRVHW-----DAQG-GKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 40 FD~v~cs~~~~~~-----~~~~-~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
||+|.|--+ .-| .|++ ..++.-+.+.|||||.|++-..
T Consensus 2 yDvilclSV-tkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 2 YDVILCLSV-TKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred ccEEEEEEe-eEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 899999432 233 2221 3588999999999999999854
No 408
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=83.44 E-value=4.1 Score=38.89 Aligned_cols=87 Identities=14% Similarity=0.208 Sum_probs=52.9
Q ss_pred ceEEEeccc-ccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCC-----CCC-CCcceeeecccc
Q 017983 222 RNVMDMNAS-YGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFN-----TYP-RTYDLLHSSFLL 292 (363)
Q Consensus 222 r~VLDvGCG-~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~l-----pfp-~sFDlVh~~~~l 292 (363)
.+||..|+| .|.++..++. .++. |+..+.+ ...+.+.+.|....+... +... ..+ +.+|+|+.....
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G~~---V~~~~~s~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~D~vid~~g~ 242 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMGAA---VIAVDIKEEKLELAKELGADEVLNSL-DDSPKDKKAAGLGGGFDVIFDFVGT 242 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCE---EEEEcCCHHHHHHHHHhCCCEEEcCC-CcCHHHHHHHhcCCCceEEEECCCC
Confidence 588888876 4667777776 4544 3444444 566777666653222211 1000 123 678987643111
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
...+.++.|.|+|||.++..
T Consensus 243 ---------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 243 ---------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred ---------HHHHHHHHHHhhcCCEEEEE
Confidence 34889999999999999875
No 409
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=82.42 E-value=14 Score=34.38 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=68.9
Q ss_pred EEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHH----HhcCc---ee-eeccccccCCCCC-C-Ccceeeecccc
Q 017983 224 VMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII----FDRGL---IG-MYHDWCESFNTYP-R-TYDLLHSSFLL 292 (363)
Q Consensus 224 VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a----~~Rgl---~~-~~~d~~e~~lpfp-~-sFDlVh~~~~l 292 (363)
|.|+||--|.+..+|.+.+. +-.+.++|.+ .-|+.| ...|+ +. .+.|. .-+++ + ..|.|+.+.+=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdG---L~~l~~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDG---LEVLKPGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SG---GGG--GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCc---ccccCCCCCCCEEEEecCC
Confidence 68999999999999999874 2345666766 444433 33454 22 23331 22455 3 47888887664
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeeee
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY 344 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~ 344 (363)
-. .+.++|.+....++..-.|++.-. .-...+++.+....|...-+
T Consensus 77 G~-----lI~~ILe~~~~~~~~~~~lILqP~-~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 77 GE-----LIIEILEAGPEKLSSAKRLILQPN-THAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp HH-----HHHHHHHHTGGGGTT--EEEEEES-S-HHHHHHHHHHTTEEEEEE
T ss_pred HH-----HHHHHHHhhHHHhccCCeEEEeCC-CChHHHHHHHHHCCCEEEEe
Confidence 42 256788888888888778887655 45678999999999987665
No 410
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=82.36 E-value=8.6 Score=38.76 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=69.9
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc----chHH-HHHhcCc---eeeeccccccCCCCC-CCcceeeeccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP----DTLS-IIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFL 291 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s----~~L~-~a~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~ 291 (363)
..+||||=||.|.|+..++.++... |.+.|.. ..|. .+.--++ +..++..|.. .+.. +.||-|++...
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~--V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~re-v~~~~~~aDrIim~~p 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPK--VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDARE-VAPELGVADRIIMGLP 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCce--EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHH-hhhccccCCEEEeCCC
Confidence 4699999999999999998876431 5555554 2332 2222222 2233333443 4445 99999987633
Q ss_pred cccccccCCHHHHHHHHhHhccCCeEEEEEcCH---H----HHHHHHHHHHhCCce
Q 017983 292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL---E----MINKLKPVLHSLQWS 340 (363)
Q Consensus 292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~---~----~~~~i~~l~~~l~W~ 340 (363)
-. -..++-..-+.||+||.+..=+.. + ....+++.+..+.-+
T Consensus 266 ~~-------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~ 314 (341)
T COG2520 266 KS-------AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYK 314 (341)
T ss_pred Cc-------chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCc
Confidence 22 134777888889999998775432 1 467888888777543
No 411
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=81.50 E-value=2.6 Score=41.72 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCC-------CchhhhhcccccCCeEEE
Q 017983 6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-------GKPLLELNRILRPGGFFI 74 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-------~~~l~E~~RVLrPGG~~~ 74 (363)
-|++...|+.|++. ++.......+.-..+-.+ .||+|+|.- |+++.. .+.+.++.+.|++||.|.
T Consensus 188 vDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNP---Pfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 188 VDVNARAVESARKNLAANGVENTEVWASNLYEPVEG-KFDLIISNP---PFHAGKAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred EecCHHHHHHHHHhHHHcCCCccEEEEecccccccc-cccEEEeCC---CccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence 48888899998765 555532333444456665 999999963 444321 157789999999999999
Q ss_pred EEeC
Q 017983 75 WSAT 78 (363)
Q Consensus 75 ~s~~ 78 (363)
+-..
T Consensus 264 iVan 267 (300)
T COG2813 264 IVAN 267 (300)
T ss_pred EEEc
Confidence 8755
No 412
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=81.46 E-value=3.4 Score=40.84 Aligned_cols=113 Identities=21% Similarity=0.278 Sum_probs=69.2
Q ss_pred CCCCHHHHH----HHHHcCCCc--eeeecccC---CCCCCCCCccEEEeCCcccccccCC--CchhhhhcccccCCeEEE
Q 017983 6 KDEHEAQIQ----FALERGIPA--ILSVIGTQ---KLTFPDDAYDLIHCARCRVHWDAQG--GKPLLELNRILRPGGFFI 74 (363)
Q Consensus 6 ~D~~~~qvq----~A~erg~p~--~~~~~~~~---~LPfpd~sFD~v~cs~~~~~~~~~~--~~~l~E~~RVLrPGG~~~ 74 (363)
+|-++.-|+ .+.+||+.. .+.+.++- .|.=-+-..++++.|-...-|+++. ...|.-+.+.|.|||+++
T Consensus 167 rDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lI 246 (311)
T PF12147_consen 167 RDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLI 246 (311)
T ss_pred EeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEE
Confidence 566655554 445778874 45555532 2222234568888876666666543 346778999999999999
Q ss_pred EEeCCCCCCChh----------------hHHHHHHHHHHHhhcceEEEEEecCCCceeEE
Q 017983 75 WSATPVYRHDDR----------------HRSVWNAMVNLTESMCWKAVARSVDSNRIGFV 118 (363)
Q Consensus 75 ~s~~~~~~~~~e----------------~~~~~~~~~~l~~~~cw~~~~~~~~~~~~~~~ 118 (363)
++..|-....+- -+..+.+|+.|...-..+++...-|.-|+.++
T Consensus 247 yTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~ID~~GIFTV 306 (311)
T PF12147_consen 247 YTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQRIDEWGIFTV 306 (311)
T ss_pred EcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhheeccCCceEE
Confidence 998642211110 01125678888888888877766555555433
No 413
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=81.39 E-value=2.5 Score=39.97 Aligned_cols=66 Identities=24% Similarity=0.338 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHc----CCCce--eee-cc-cCCCC-CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983 7 DEHEAQIQFALER----GIPAI--LSV-IG-TQKLT-FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p~~--~~~-~~-~~~LP-fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s 76 (363)
|..+...+.|++- |+.-. +.. .+ .+.|- +.+++||+|+-- ++..+-..++.++.+.|||||.+++-
T Consensus 91 E~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 91 ERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred eCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 4566666677644 66543 222 12 22233 678999999863 23323346999999999999999884
No 414
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=81.25 E-value=1.9 Score=40.27 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHc----CCCc-eeeecccCCCCC-CCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 7 DEHEAQIQFALER----GIPA-ILSVIGTQKLTF-PDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p~-~~~~~~~~~LPf-pd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
|.++..++.|+++ |... .+...+.. ..+ +...||.|++..+... .-.++.+-||+||++++-..
T Consensus 104 E~~~~l~~~A~~~l~~~~~~nv~~~~gdg~-~g~~~~apfD~I~v~~a~~~-------ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 104 ERDPELAERARRNLARLGIDNVEVVVGDGS-EGWPEEAPFDRIIVTAAVPE-------IPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp ESBHHHHHHHHHHHHHHTTHSEEEEES-GG-GTTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEES
T ss_pred CccHHHHHHHHHHHHHhccCceeEEEcchh-hccccCCCcCEEEEeeccch-------HHHHHHHhcCCCcEEEEEEc
Confidence 4567777777766 6654 44444432 233 3568999999755422 23456667999999999755
No 415
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=80.92 E-value=2.4 Score=38.10 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=19.4
Q ss_pred chhhhhcccccCCeEEEEEeCCC
Q 017983 58 KPLLELNRILRPGGFFIWSATPV 80 (363)
Q Consensus 58 ~~l~E~~RVLrPGG~~~~s~~~~ 80 (363)
..+.|+.|||||||.+++.....
T Consensus 37 ~~~~~~~rvLk~~g~~~i~~~~~ 59 (231)
T PF01555_consen 37 EWLKECYRVLKPGGSIFIFIDDR 59 (231)
T ss_dssp HHHHHHHHHEEEEEEEEEEE-CC
T ss_pred HHHHHHHhhcCCCeeEEEEecch
Confidence 58899999999999999987643
No 416
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=80.80 E-value=3 Score=41.99 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=57.3
Q ss_pred CceEEEeccc-ccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCC-CCCCcceeeecccccccc
Q 017983 221 VRNVMDMNAS-YGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNT-YPRTYDLLHSSFLLSDVT 296 (363)
Q Consensus 221 ~r~VLDvGCG-~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lp-fp~sFDlVh~~~~l~~~~ 296 (363)
...|+=+|+| .|..|..+++ .+ ..|+.+|.+ +-++.|++-|...++..-.+..+. ....||+|+..-. .
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~--- 239 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG---AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P--- 239 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h---
Confidence 3477777776 4467777776 44 356777877 788888888864333311111111 2255998886533 2
Q ss_pred ccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 297 QRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 297 ~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
..+...-+.||+||++++-
T Consensus 240 ------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 240 ------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred ------hhHHHHHHHHhcCCEEEEE
Confidence 3778888999999999986
No 417
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=80.20 E-value=13 Score=36.62 Aligned_cols=121 Identities=15% Similarity=0.190 Sum_probs=70.5
Q ss_pred hccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCcc-----hHHHHHhcCc---eeee-ccccccCCCCC--
Q 017983 212 GGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPD-----TLSIIFDRGL---IGMY-HDWCESFNTYP-- 280 (363)
Q Consensus 212 ~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~-----~L~~a~~Rgl---~~~~-~d~~e~~lpfp-- 280 (363)
..|.+.+|+ +|+.-|.|.|++.-+|+..-.-..-+.-.+.++ .++--++.|+ +.+. -|-|. ..|.
T Consensus 99 ~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~--~GF~~k 174 (314)
T KOG2915|consen 99 SMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG--SGFLIK 174 (314)
T ss_pred HHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc--CCcccc
Confidence 345566665 999999999998888876321111233335442 3334444454 3333 46665 4554
Q ss_pred -CCcceeeeccccccccccCCHHHHHHHHhHhccCCe-EEE-EEcCHHHHHHHHHHHHhCCceeeee
Q 017983 281 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGG-YVL-VQDTLEMINKLKPVLHSLQWSTNIY 344 (363)
Q Consensus 281 -~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG-~li-i~D~~~~~~~i~~l~~~l~W~~~~~ 344 (363)
..+|.|+-. ++++ -.++--.+.+||-+| +++ |+--.+.+++--+.+.++.|.....
T Consensus 175 s~~aDaVFLD-----lPaP---w~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~ 233 (314)
T KOG2915|consen 175 SLKADAVFLD-----LPAP---WEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIET 233 (314)
T ss_pred ccccceEEEc-----CCCh---hhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEE
Confidence 788888754 2222 225555566888866 333 3334555666667778888865443
No 418
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=80.06 E-value=8.3 Score=39.22 Aligned_cols=129 Identities=19% Similarity=0.103 Sum_probs=70.3
Q ss_pred cccCCCCCceEEEecccccHHHHHhhcC--CCe-EEEEeecCCc----chHHHHHhcCc----eeeeccc-----cc--c
Q 017983 214 LAINWSSVRNVMDMNASYGGFAAALIDQ--PLW-VMNVVPIDAP----DTLSIIFDRGL----IGMYHDW-----CE--S 275 (363)
Q Consensus 214 l~i~~~~~r~VLDvGCG~G~faa~L~~~--~v~-v~~v~~~d~s----~~L~~a~~Rgl----~~~~~d~-----~e--~ 275 (363)
|++++ ..+||||.+-.|+=.+.|.+. ..+ -..|+..|.. +||.-...|-. ..+-|+. +. .
T Consensus 151 L~v~p--~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 151 LGVKP--GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred cccCC--CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccccccc
Confidence 34555 469999999999977777652 111 0124555554 56655555532 1111210 00 0
Q ss_pred CCCCC-CCcceeeec------cccccccc--------c--CC----HHHHHHHHhHhccCCeEEEEEc-------CHHH-
Q 017983 276 FNTYP-RTYDLLHSS------FLLSDVTQ--------R--CD----IADVAVEMDRILRPGGYVLVQD-------TLEM- 326 (363)
Q Consensus 276 ~lpfp-~sFDlVh~~------~~l~~~~~--------~--~~----~~~~L~Em~RVLRPGG~lii~D-------~~~~- 326 (363)
..++. -.||-|.|. ..+.+-++ . -+ -..+|.-=.|.|||||.++.+. ...+
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV 308 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVV 308 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHH
Confidence 01345 689999874 22222110 0 00 0356777789999999999984 2222
Q ss_pred HHHHHHHHHhCCceeeee
Q 017983 327 INKLKPVLHSLQWSTNIY 344 (363)
Q Consensus 327 ~~~i~~l~~~l~W~~~~~ 344 (363)
...++++...+.|.....
T Consensus 309 ~~~L~~~~~~~~lv~~~~ 326 (375)
T KOG2198|consen 309 QEALQKVGGAVELVDVSG 326 (375)
T ss_pred HHHHHHhcCcccceeecc
Confidence 344555556777765544
No 419
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=79.64 E-value=5.1 Score=41.00 Aligned_cols=99 Identities=16% Similarity=0.226 Sum_probs=63.2
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHh--------cCc-----eeeeccccccCCCCC-CCcc
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD--------RGL-----IGMYHDWCESFNTYP-RTYD 284 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~--------Rgl-----~~~~~d~~e~~lpfp-~sFD 284 (363)
..|+||=+|-|-|--++.|.+++ .++.++-+|.. +|++.+.. .|. +.++.+.+-..+-=. +.||
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 35899999999999999999987 34456666665 67776652 221 334444332222223 8999
Q ss_pred eeeeccccccccccCC--H-----HHHHHHHhHhccCCeEEEEEcCH
Q 017983 285 LLHSSFLLSDVTQRCD--I-----ADVAVEMDRILRPGGYVLVQDTL 324 (363)
Q Consensus 285 lVh~~~~l~~~~~~~~--~-----~~~L~Em~RVLRPGG~lii~D~~ 324 (363)
.|+... +++.+ + +.+-.-..|-|+++|.+++.-..
T Consensus 368 ~vIVDl-----~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 368 VVIVDL-----PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred EEEEeC-----CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 998752 22222 1 33444556778899999998543
No 420
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=79.44 E-value=1.2 Score=42.17 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHc-----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeCCC-
Q 017983 8 EHEAQIQFALER-----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSATPV- 80 (363)
Q Consensus 8 ~~~~qvq~A~er-----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~~~- 80 (363)
..+.-++.|.+. +....+.+.+.|..--+.+.+|+|.|--|+-|-++++ -.+|.-....|+|||.+++---..
T Consensus 86 p~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~ 165 (218)
T PF05891_consen 86 PVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSS 165 (218)
T ss_dssp S-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred cCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCC
Confidence 445667777754 2335666777777654468999999999999988653 578999999999999999841110
Q ss_pred --C-CCChhhHHH---HHHHHHHHhhcceEEEEEecC
Q 017983 81 --Y-RHDDRHRSV---WNAMVNLTESMCWKAVARSVD 111 (363)
Q Consensus 81 --~-~~~~e~~~~---~~~~~~l~~~~cw~~~~~~~~ 111 (363)
. -.++++-.+ -..+..|.++-..+++.+..|
T Consensus 166 ~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 166 SGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp SSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred CCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 0 112222111 456777888888888886544
No 421
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=79.03 E-value=3.1 Score=37.42 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=39.4
Q ss_pred CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----eeeecccccc-CCCCC-CCcceeeecccc
Q 017983 221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IGMYHDWCES-FNTYP-RTYDLLHSSFLL 292 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----~~~~~d~~e~-~lpfp-~sFDlVh~~~~l 292 (363)
...++|+|||.|-+..+..-.+. -.|++.|.. +.|++...... +..+. |.- .+-+. ..||.++.+-=|
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfEvqidlLq--cdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFEVQIDLLQ--CDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhhhhhheee--eeccchhccCCeEeeEEecCCC
Confidence 35899999999987644433221 135667776 66765433321 22222 111 12234 899998887655
Q ss_pred c
Q 017983 293 S 293 (363)
Q Consensus 293 ~ 293 (363)
.
T Consensus 125 G 125 (185)
T KOG3420|consen 125 G 125 (185)
T ss_pred C
Confidence 4
No 422
>PHA01634 hypothetical protein
Probab=78.54 E-value=4.7 Score=35.52 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=37.4
Q ss_pred hhccc-cchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc
Q 017983 193 EAFNK-DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP 254 (363)
Q Consensus 193 e~F~~-~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s 254 (363)
|.|.. +-..|+....+ |- .+.+. .++|+|+|++.|.-+.+++-+++. .|++....
T Consensus 5 ~yf~~~~c~ywrey~~~-Y~-~idvk---~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~ 60 (156)
T PHA01634 5 EYFRKLECDYWREYPHA-YG-MLNVY---QRTIQIVGADCGSSALYFLLRGAS--FVVQYEKE 60 (156)
T ss_pred HHHHHccchHHHHHHHH-hh-heeec---CCEEEEecCCccchhhHHhhcCcc--EEEEeccC
Confidence 34433 67889988765 53 23333 479999999999999999877754 24444444
No 423
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=78.51 E-value=3 Score=39.80 Aligned_cols=98 Identities=15% Similarity=0.233 Sum_probs=43.2
Q ss_pred hccccchhHHHHHH----HhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCc----
Q 017983 194 AFNKDTTHWYALVS----DVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGL---- 265 (363)
Q Consensus 194 ~F~~~~~~W~~~~~----~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl---- 265 (363)
+|......++..-. +..+...+++.+...+|||.-||.|.=+.-|+..|.. |+....+..+....+.|+
T Consensus 45 DF~~g~~~~R~~~~~g~~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~---V~~lErspvia~Ll~dGL~r~~ 121 (234)
T PF04445_consen 45 DFHPGAAAYRRKHGGGKGDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCK---VTGLERSPVIAALLKDGLKRAQ 121 (234)
T ss_dssp -SSSHHHHHHHHHSSGGGSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHH
T ss_pred EcCCcHHHHHHhhcCCCccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCe---EEEEECCHHHHHHHHHHHHHHH
Confidence 46665555554322 1122334566665569999999999754444433433 444444322222222211
Q ss_pred ------------eeeeccccccCCCCC-CCcceeeecccccc
Q 017983 266 ------------IGMYHDWCESFNTYP-RTYDLLHSSFLLSD 294 (363)
Q Consensus 266 ------------~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~ 294 (363)
+.+++..+...|..+ ++||+|...=+|.|
T Consensus 122 ~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 122 QDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEEE--S---
T ss_pred hCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEEECCCCCC
Confidence 345554444456666 99999999988887
No 424
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=78.45 E-value=2.5 Score=37.34 Aligned_cols=67 Identities=7% Similarity=-0.087 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHcC--C-CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcc--cccCCeEEEEE
Q 017983 6 KDEHEAQIQFALERG--I-PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNR--ILRPGGFFIWS 76 (363)
Q Consensus 6 ~D~~~~qvq~A~erg--~-p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~R--VLrPGG~~~~s 76 (363)
-|.++.+++.++++- . .+.+...++..+++++..||.|++.. ++.. ....+..+.. -+.++|.|++-
T Consensus 41 vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~---Py~~-~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 41 IEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNL---PYNI-STPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred EECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECC---Cccc-HHHHHHHHHhcCCCcceEEEEEE
Confidence 477888899888772 2 35677788899999998899998863 2221 1123332322 24588888876
No 425
>PHA03412 putative methyltransferase; Provisional
Probab=77.63 E-value=5.8 Score=38.11 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCC-----ccccccc-C-----CCchhhhhcccccCCeEEEE
Q 017983 7 DEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCAR-----CRVHWDA-Q-----GGKPLLELNRILRPGGFFIW 75 (363)
Q Consensus 7 D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~-----~~~~~~~-~-----~~~~l~E~~RVLrPGG~~~~ 75 (363)
|+++..++.|++.-..+.+...+....++ +++||+|+|.- ...+... . ...++..+.|.|+||+. ++
T Consensus 83 EID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 83 ELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 78899999998765456777777766665 57999999942 1111100 0 11367778887777775 44
No 426
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=77.60 E-value=2.1 Score=40.95 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=27.5
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHh
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD 262 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~ 262 (363)
....|||+|+|+|.++.+|.+.+.. ++.++.. .+.+...+
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~---v~~vE~d~~~~~~L~~ 70 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKR---VIAVEIDPDLAKHLKE 70 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSE---EEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCccchhhHhcccCc---ceeecCcHhHHHHHHH
Confidence 3569999999999999999987633 3344443 34444444
No 427
>PRK00536 speE spermidine synthase; Provisional
Probab=77.04 E-value=4.1 Score=39.52 Aligned_cols=35 Identities=34% Similarity=0.518 Sum_probs=27.8
Q ss_pred CCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983 37 DDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA 77 (363)
Q Consensus 37 d~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~ 77 (363)
.++||+|++-. + +...+.+.+.|.|+|||.++.-+
T Consensus 137 ~~~fDVIIvDs-~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 137 IKKYDLIICLQ-E-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CCcCCEEEEcC-C-----CChHHHHHHHHhcCCCcEEEECC
Confidence 37899999752 2 23468899999999999999953
No 428
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=75.93 E-value=6.6 Score=39.53 Aligned_cols=77 Identities=21% Similarity=0.437 Sum_probs=45.6
Q ss_pred cCCCCHHHHHHH---HHc-CCCc-eeeecccCCCC--CCCC-CccEEEe----CC-ccc------ccccC----------
Q 017983 5 PKDEHEAQIQFA---LER-GIPA-ILSVIGTQKLT--FPDD-AYDLIHC----AR-CRV------HWDAQ---------- 55 (363)
Q Consensus 5 p~D~~~~qvq~A---~er-g~p~-~~~~~~~~~LP--fpd~-sFD~v~c----s~-~~~------~~~~~---------- 55 (363)
..|.|+.-++.. .+| |+.+ .+...++..+| ++.. .||.|.+ |- ..+ -|...
T Consensus 187 A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~l 266 (355)
T COG0144 187 AVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKL 266 (355)
T ss_pred EEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHH
Confidence 456666444333 333 8775 56666665553 3333 5999985 32 111 11111
Q ss_pred CCchhhhhcccccCCeEEEEEeCCCC
Q 017983 56 GGKPLLELNRILRPGGFFIWSATPVY 81 (363)
Q Consensus 56 ~~~~l~E~~RVLrPGG~~~~s~~~~~ 81 (363)
....|..+.++|||||.|++|+=.+.
T Consensus 267 Q~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 267 QKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 11477888999999999999965443
No 429
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=75.82 E-value=1.1 Score=43.10 Aligned_cols=135 Identities=21% Similarity=0.311 Sum_probs=70.3
Q ss_pred cchhHHHHHHHhhhh---ccccCCCCCceEEEecccccHHHHHhhcC---CC--e-EE--EEeecCCcchHHHHHhcCce
Q 017983 198 DTTHWYALVSDVYVG---GLAINWSSVRNVMDMNASYGGFAAALIDQ---PL--W-VM--NVVPIDAPDTLSIIFDRGLI 266 (363)
Q Consensus 198 ~~~~W~~~~~~~y~~---~l~i~~~~~r~VLDvGCG~G~faa~L~~~---~v--~-v~--~v~~~d~s~~L~~a~~Rgl~ 266 (363)
..+.||.+-.-..++ .++|=.| ..+|.|+.+-.|++.-.|.++ +. . .. -++.+|...|..+ .|++
T Consensus 17 Ke~gwRARSAFKLlqideef~i~~g-v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI---~GV~ 92 (294)
T KOG1099|consen 17 KENGWRARSAFKLLQIDEEFQIFEG-VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI---EGVI 92 (294)
T ss_pred HhccchHHhHHHHhhhhhhhhHHhh-hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc---CceE
Confidence 457788765521111 1222223 679999999999988777652 10 0 00 1555555444321 2222
Q ss_pred eeeccc-----cccCCC-CC-CCcceeeeccc-----cccccc---cCCHHHHHHHHhHhccCCeEEEEE-----cCHHH
Q 017983 267 GMYHDW-----CESFNT-YP-RTYDLLHSSFL-----LSDVTQ---RCDIADVAVEMDRILRPGGYVLVQ-----DTLEM 326 (363)
Q Consensus 267 ~~~~d~-----~e~~lp-fp-~sFDlVh~~~~-----l~~~~~---~~~~~~~L~Em~RVLRPGG~lii~-----D~~~~ 326 (363)
....|. ++..+- |. .--|+|+|... +|.+.. .+-+..+|.=.-+||||||.|+-- |..-.
T Consensus 93 qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslL 172 (294)
T KOG1099|consen 93 QLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLL 172 (294)
T ss_pred EeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHH
Confidence 111111 011111 45 57899999754 332211 122345666778999999999853 33333
Q ss_pred HHHHHHHHHh
Q 017983 327 INKLKPVLHS 336 (363)
Q Consensus 327 ~~~i~~l~~~ 336 (363)
-..++.+-++
T Consensus 173 ysql~~ff~k 182 (294)
T KOG1099|consen 173 YSQLRKFFKK 182 (294)
T ss_pred HHHHHHHhhc
Confidence 3455555443
No 430
>PLN02823 spermine synthase
Probab=75.15 E-value=8.9 Score=38.44 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHcC-C-------C-ceeeeccc-CCCCCCCCCccEEEeCCcccccccC------CCchhh-hhcccccC
Q 017983 7 DEHEAQIQFALERG-I-------P-AILSVIGT-QKLTFPDDAYDLIHCARCRVHWDAQ------GGKPLL-ELNRILRP 69 (363)
Q Consensus 7 D~~~~qvq~A~erg-~-------p-~~~~~~~~-~~LPfpd~sFD~v~cs~~~~~~~~~------~~~~l~-E~~RVLrP 69 (363)
|+.+..++.|++.- . | +.+...|+ +-|.-.++.||+|++-. .-++... ...++. .+.|.|+|
T Consensus 134 EiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p 212 (336)
T PLN02823 134 DIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNP 212 (336)
T ss_pred ECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecC-CCccccCcchhhccHHHHHHHHHHhcCC
Confidence 77888999998762 1 1 33444443 22455578999999853 2222111 124676 78999999
Q ss_pred CeEEEEEe
Q 017983 70 GGFFIWSA 77 (363)
Q Consensus 70 GG~~~~s~ 77 (363)
||.|++-.
T Consensus 213 ~Gvlv~q~ 220 (336)
T PLN02823 213 GGIFVTQA 220 (336)
T ss_pred CcEEEEec
Confidence 99998754
No 431
>PRK10742 putative methyltransferase; Provisional
Probab=74.66 E-value=15 Score=35.52 Aligned_cols=91 Identities=20% Similarity=0.139 Sum_probs=53.8
Q ss_pred ccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc----chHHHHHhcC---------c---eeeeccccccC
Q 017983 213 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP----DTLSIIFDRG---------L---IGMYHDWCESF 276 (363)
Q Consensus 213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s----~~L~~a~~Rg---------l---~~~~~d~~e~~ 276 (363)
-.+++.+..-+|||.=+|+|.-+..++..+..| +.++.+ ..|+-..+|. + +.+++..+...
T Consensus 81 Avglk~g~~p~VLD~TAGlG~Da~~las~G~~V---~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~ 157 (250)
T PRK10742 81 AVGIKGDYLPDVVDATAGLGRDAFVLASVGCRV---RMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA 157 (250)
T ss_pred HhCCCCCCCCEEEECCCCccHHHHHHHHcCCEE---EEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHH
Confidence 344555433489999999999999999887653 444433 2333333331 0 23344333333
Q ss_pred CCC-CCCcceeeeccccccccccCCHHHHHHHHh
Q 017983 277 NTY-PRTYDLLHSSFLLSDVTQRCDIADVAVEMD 309 (363)
Q Consensus 277 lpf-p~sFDlVh~~~~l~~~~~~~~~~~~L~Em~ 309 (363)
|.- +.+||+|...=.|.|=. .. ....+||.
T Consensus 158 L~~~~~~fDVVYlDPMfp~~~-ks--a~vkk~mr 188 (250)
T PRK10742 158 LTDITPRPQVVYLDPMFPHKQ-KS--ALVKKEMR 188 (250)
T ss_pred HhhCCCCCcEEEECCCCCCCc-cc--cchhhhHH
Confidence 432 37899999998888632 21 12556664
No 432
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=73.64 E-value=10 Score=36.62 Aligned_cols=95 Identities=21% Similarity=0.312 Sum_probs=52.8
Q ss_pred CCceEEEeccccc--HHHHHhhcCCCeEEEEeecCCc---chHHHHHhcCc----------eeeeccccccC--CCCCCC
Q 017983 220 SVRNVMDMNASYG--GFAAALIDQPLWVMNVVPIDAP---DTLSIIFDRGL----------IGMYHDWCESF--NTYPRT 282 (363)
Q Consensus 220 ~~r~VLDvGCG~G--~faa~L~~~~v~v~~v~~~d~s---~~L~~a~~Rgl----------~~~~~d~~e~~--lpfp~s 282 (363)
...+||.+|+|+| +.++++... .+++-.|.+ ..|+...+++. +....+|-++. .-++..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~----~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG----AEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc----ceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence 4568999999999 344444322 134444444 23333322221 11233454321 112333
Q ss_pred -cceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 283 -YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 283 -FDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
||+|+++.++-+.... +.++.=|.-.|--+|.+++.
T Consensus 162 ~~DlilasDvvy~~~~~---e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 162 PFDLILASDVVYEEESF---EGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred cccEEEEeeeeecCCcc---hhHHHHHHHHHhcCCeEEEE
Confidence 9999999999866554 44555566667778855554
No 433
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=72.74 E-value=3.5 Score=41.26 Aligned_cols=68 Identities=16% Similarity=0.289 Sum_probs=48.8
Q ss_pred CCccEEEeCC---cccccccCCCchhhhhcccccCCeEEEEEeCCCCCCChhh--------HHHHHHHHHHHhhcceEEE
Q 017983 38 DAYDLIHCAR---CRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDRH--------RSVWNAMVNLTESMCWKAV 106 (363)
Q Consensus 38 ~sFD~v~cs~---~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~--------~~~~~~~~~l~~~~cw~~~ 106 (363)
++||+|+... +++. --.+|.-+..+|||||.++=-+|..|..-++. .-....+..+++.+.|+..
T Consensus 258 ~~~d~VvTcfFIDTa~N----ileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ 333 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHN----ILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVE 333 (369)
T ss_pred CccceEEEEEEeechHH----HHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEE
Confidence 5799997421 2222 22478889999999999999999777433311 1125788899999999999
Q ss_pred EEe
Q 017983 107 ARS 109 (363)
Q Consensus 107 ~~~ 109 (363)
.+.
T Consensus 334 ke~ 336 (369)
T KOG2798|consen 334 KER 336 (369)
T ss_pred Eee
Confidence 876
No 434
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=72.61 E-value=3.3 Score=42.22 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=37.5
Q ss_pred CC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 279 YP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 279 fp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
.| ++||.++-+..+.-+. .......+.++.|++||||.++++..
T Consensus 291 ~~~~s~~~~vL~D~~Dwm~-~~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 291 LPPGSFDRFVLSDHMDWMD-PEQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred CCCCCeeEEEecchhhhCC-HHHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 56 9999999888887654 46788999999999999999999854
No 435
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=72.39 E-value=9.9 Score=36.54 Aligned_cols=87 Identities=15% Similarity=0.208 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHc----CCC--ceeeecccCCCCCC---CCCccEEEeCCcccccccCCCchhhhhcccc-cCCeEEEEE
Q 017983 7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFP---DDAYDLIHCARCRVHWDAQGGKPLLELNRIL-RPGGFFIWS 76 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfp---d~sFD~v~cs~~~~~~~~~~~~~l~E~~RVL-rPGG~~~~s 76 (363)
|.|+.-++.|++. |++ +.+..-|...--|+ ++.||.|+-- .+ ++-.++..+.++| ||||+++.-
T Consensus 72 E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLD-----lp-~Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 72 EFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLD-----LP-DPWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp ESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEE-----SS-SGGGGHHHHHHHE-EEEEEEEEE
T ss_pred ccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEEe-----CC-CHHHHHHHHHHHHhcCCceEEEE
Confidence 5666666666643 665 45556665444453 4789999753 23 2456999999999 999999998
Q ss_pred eCCCCCCChhhHHHHHHHHHHHhhcceEEEE
Q 017983 77 ATPVYRHDDRHRSVWNAMVNLTESMCWKAVA 107 (363)
Q Consensus 77 ~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~ 107 (363)
+|-+. ++++.++.|-+ ..|..+.
T Consensus 146 sP~ie-------Qv~~~~~~L~~-~gf~~i~ 168 (247)
T PF08704_consen 146 SPCIE-------QVQKTVEALRE-HGFTDIE 168 (247)
T ss_dssp ESSHH-------HHHHHHHHHHH-TTEEEEE
T ss_pred CCCHH-------HHHHHHHHHHH-CCCeeeE
Confidence 88443 66677776666 3565553
No 436
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=71.51 E-value=2.2 Score=38.30 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=28.9
Q ss_pred CCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 36 PDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 36 pd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
....||+|+++.|...- ..-..++.=+.+.|+|+|.++++.+
T Consensus 116 ~~~~~D~IlasDv~Y~~-~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 116 EPHSFDVILASDVLYDE-ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp S-SSBSEEEEES--S-G-GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred ccccCCEEEEecccchH-HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 34689999999998552 2234677888899999999888866
No 437
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=71.48 E-value=12 Score=36.61 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=45.4
Q ss_pred CceEEEecccccHHHHHh-hcCCCeEEEEeecCCc-chHHHH----H-hcCc---eeeeccccccCCCCC-CCcceeeec
Q 017983 221 VRNVMDMNASYGGFAAAL-IDQPLWVMNVVPIDAP-DTLSII----F-DRGL---IGMYHDWCESFNTYP-RTYDLLHSS 289 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L-~~~~v~v~~v~~~d~s-~~L~~a----~-~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~ 289 (363)
.++|+=+|+|.=-+++-+ ++.-.....|..+|.. ..++.+ . .-|+ +.+.... ....++. ..||+|+.+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d-~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITAD-VLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES--GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecc-hhccccccccCCEEEEh
Confidence 469999999976554443 3321111223444544 323222 2 1133 2222111 1225567 899999987
Q ss_pred cccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983 290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 323 (363)
Q Consensus 290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 323 (363)
....- +....+++|..+.+.++||..++++-.
T Consensus 200 alVg~--~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 200 ALVGM--DAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp TT-S------SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred hhccc--ccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 55441 334578999999999999999999954
No 438
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=70.31 E-value=3.4 Score=41.29 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=14.0
Q ss_pred CCCCCCCCCccEEEeCCccccccc
Q 017983 31 QKLTFPDDAYDLIHCARCRVHWDA 54 (363)
Q Consensus 31 ~~LPfpd~sFD~v~cs~~~~~~~~ 54 (363)
..==||++|.|++|++.++ ||..
T Consensus 99 y~rLfP~~Svh~~~Ss~al-HWLS 121 (334)
T PF03492_consen 99 YGRLFPSNSVHFGHSSYAL-HWLS 121 (334)
T ss_dssp TS--S-TT-EEEEEEES-T-TB-S
T ss_pred hhccCCCCceEEEEEechh-hhcc
Confidence 3345999999999999776 8854
No 439
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=70.26 E-value=1.7 Score=40.71 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=41.6
Q ss_pred CCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCC--CChhhH----HHHHHHHHHHhhcceEEEEEe
Q 017983 36 PDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYR--HDDRHR----SVWNAMVNLTESMCWKAVARS 109 (363)
Q Consensus 36 pd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~--~~~e~~----~~~~~~~~l~~~~cw~~~~~~ 109 (363)
+++++|++...... | +....++.+++.+.|||||.+++...-+.. ...+.. -.-..+..-+....+++-++.
T Consensus 127 ~~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 127 PTAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred ccchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeee
Confidence 45566666544333 2 333467999999999999999997542211 111100 002234555666677777765
No 440
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=69.40 E-value=5.8 Score=40.61 Aligned_cols=71 Identities=15% Similarity=0.231 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHc----CCC---ceeeecccCC-CC-C--CCCCccEEEeCCcccccccCC----------Cchhhhhc
Q 017983 6 KDEHEAQIQFALER----GIP---AILSVIGTQK-LT-F--PDDAYDLIHCARCRVHWDAQG----------GKPLLELN 64 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p---~~~~~~~~~~-LP-f--pd~sFD~v~cs~~~~~~~~~~----------~~~l~E~~ 64 (363)
-|.++..++.|.+. |+. +.+...++.. |+ + ..++||+|++.-=. +.... ..++.-+.
T Consensus 249 VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~--f~~~k~~l~~~~~~y~~l~~~a~ 326 (396)
T PRK15128 249 VDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPK--FVENKSQLMGACRGYKDINMLAI 326 (396)
T ss_pred EECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCC--CCCChHHHHHHHHHHHHHHHHHH
Confidence 47888888888764 553 3455556433 21 2 35689999985211 11100 12334567
Q ss_pred ccccCCeEEEEEeC
Q 017983 65 RILRPGGFFIWSAT 78 (363)
Q Consensus 65 RVLrPGG~~~~s~~ 78 (363)
++|+|||.|+.++-
T Consensus 327 ~lLk~gG~lv~~sc 340 (396)
T PRK15128 327 QLLNPGGILLTFSC 340 (396)
T ss_pred HHcCCCeEEEEEeC
Confidence 99999999998643
No 441
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=69.29 E-value=6.8 Score=38.59 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=41.9
Q ss_pred CCCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC-----------HHHHHHHHHHHHhCCceee
Q 017983 279 YPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-----------LEMINKLKPVLHSLQWSTN 342 (363)
Q Consensus 279 fp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----------~~~~~~i~~l~~~l~W~~~ 342 (363)
|.+-||+|+.++...|.- --|+.++++|||.+++-.. ..+.++|+++|+.-.|+..
T Consensus 219 y~~~Fd~ifvs~s~vh~L--------~p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 219 YQNFFDLIFVSCSMVHFL--------KPELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred hcCCCCEEEEhhhhHhhc--------chHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 568899999876655432 1258899999999988642 2367899999999888754
No 442
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=69.12 E-value=55 Score=31.79 Aligned_cols=95 Identities=23% Similarity=0.270 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHc----CCCceeeecccCCC-CCCCCCccEEEeCCcccccc-------------------cCC-----
Q 017983 6 KDEHEAQIQFALER----GIPAILSVIGTQKL-TFPDDAYDLIHCARCRVHWD-------------------AQG----- 56 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~L-Pfpd~sFD~v~cs~~~~~~~-------------------~~~----- 56 (363)
-|+|...++.|++. |+.....+.+ .-+ +.+ +.||+|+|+-=.++-. ..+
T Consensus 140 ~Dis~~Al~~A~~Na~~~~l~~~~~~~~-dlf~~~~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~ 217 (280)
T COG2890 140 VDISPDALALARENAERNGLVRVLVVQS-DLFEPLR-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVY 217 (280)
T ss_pred EECCHHHHHHHHHHHHHcCCccEEEEee-ecccccC-CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHH
Confidence 48999888888654 5422122222 112 233 3899999943111110 000
Q ss_pred CchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcc-eEEEEEecC
Q 017983 57 GKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMC-WKAVARSVD 111 (363)
Q Consensus 57 ~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~c-w~~~~~~~~ 111 (363)
..++.++.+.|+|||.+++..-.. .-..+.++....+ +..+....+
T Consensus 218 ~~i~~~a~~~l~~~g~l~le~g~~---------q~~~v~~~~~~~~~~~~v~~~~d 264 (280)
T COG2890 218 RRILGEAPDILKPGGVLILEIGLT---------QGEAVKALFEDTGFFEIVETLKD 264 (280)
T ss_pred HHHHHhhHHHcCCCcEEEEEECCC---------cHHHHHHHHHhcCCceEEEEEec
Confidence 146788999999999999986521 1346777888888 444444444
No 443
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=68.89 E-value=14 Score=33.87 Aligned_cols=81 Identities=14% Similarity=0.150 Sum_probs=49.2
Q ss_pred HHHcCCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHH
Q 017983 16 ALERGIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAM 94 (363)
Q Consensus 16 A~erg~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~ 94 (363)
+.+-|++ +.+....++. +-...+||+|++.-.. + ...++.-+.+.|+|||++++---+ ... ++....
T Consensus 92 ~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~-~----l~~l~~~~~~~l~~~G~~l~~KG~--~~~----~El~~~ 159 (184)
T PF02527_consen 92 VRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA-P----LDKLLELARPLLKPGGRLLAYKGP--DAE----EELEEA 159 (184)
T ss_dssp HHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS-S----HHHHHHHHGGGEEEEEEEEEEESS----H----HHHHTH
T ss_pred HHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc-C----HHHHHHHHHHhcCCCCEEEEEcCC--ChH----HHHHHH
Confidence 4455887 5555555777 7778999999986433 3 236888888999999998887431 111 334445
Q ss_pred HHHHhhcceEEEEE
Q 017983 95 VNLTESMCWKAVAR 108 (363)
Q Consensus 95 ~~l~~~~cw~~~~~ 108 (363)
+.-.+.+.++...-
T Consensus 160 ~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 160 KKAWKKLGLKVLSV 173 (184)
T ss_dssp HHHHHCCCEEEEEE
T ss_pred HhHHHHhCCEEeee
Confidence 55555565655543
No 444
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=68.58 E-value=3.3 Score=43.69 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=29.0
Q ss_pred hhccccchhHHHHHHHhhhh-ccccCCCCCceEEEecccccHHHHHhhcCC
Q 017983 193 EAFNKDTTHWYALVSDVYVG-GLAINWSSVRNVMDMNASYGGFAAALIDQP 242 (363)
Q Consensus 193 e~F~~~~~~W~~~~~~~y~~-~l~i~~~~~r~VLDvGCG~G~faa~L~~~~ 242 (363)
+.|.-.+..=- .+- .|+. ..++..+ ..+||+-||||.++.+|+.+-
T Consensus 359 AFFQ~Nt~~ae-vLy-s~i~e~~~l~~~--k~llDv~CGTG~iglala~~~ 405 (534)
T KOG2187|consen 359 AFFQTNTSAAE-VLY-STIGEWAGLPAD--KTLLDVCCGTGTIGLALARGV 405 (534)
T ss_pred hhhccCcHHHH-HHH-HHHHHHhCCCCC--cEEEEEeecCCceehhhhccc
Confidence 45555444322 221 2443 3344444 589999999999999999863
No 445
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.98 E-value=12 Score=35.30 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHc----CCCceeeecccCCCCCCC-CCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 8 EHEAQIQFALER----GIPAILSVIGTQKLTFPD-DAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 8 ~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd-~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
..+...++|+++ |...+....+--..=+|. +.||.|++..+.-..+ .-..+-|||||.+++-.-
T Consensus 102 r~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP-------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 102 RIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVP-------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeeccCCCC-------HHHHHhcccCCEEEEEEc
Confidence 345667777554 775444444433444554 8899999875543322 233457999999999744
No 446
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=65.21 E-value=23 Score=31.29 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHc----CCC--ceeeecccCCCC-CCC-CCccEEEeCCcccccccCCC--------chhhhhcccccCC
Q 017983 7 DEHEAQIQFALER----GIP--AILSVIGTQKLT-FPD-DAYDLIHCARCRVHWDAQGG--------KPLLELNRILRPG 70 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LP-fpd-~sFD~v~cs~~~~~~~~~~~--------~~l~E~~RVLrPG 70 (363)
|+-+..++.+++| |.. +.+...+=+.|. |-+ +.+|+|+-++...|=.+..- .+|..+.+.|+||
T Consensus 6 DIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~g 85 (140)
T PF06962_consen 6 DIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPG 85 (140)
T ss_dssp ES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEE
T ss_pred ECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccC
Confidence 5666677777766 433 444444434443 333 59999998877666332111 4889999999999
Q ss_pred eEEEEEeCCCCCCChhhHHHHHHHHHHHhhcce
Q 017983 71 GFFIWSATPVYRHDDRHRSVWNAMVNLTESMCW 103 (363)
Q Consensus 71 G~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw 103 (363)
|.+++... ...+.-.++...+++.++.+..
T Consensus 86 G~i~iv~Y---~GH~gG~eE~~av~~~~~~L~~ 115 (140)
T PF06962_consen 86 GIITIVVY---PGHPGGKEESEAVEEFLASLDQ 115 (140)
T ss_dssp EEEEEEE-----STCHHHHHHHHHHHHHHTS-T
T ss_pred CEEEEEEe---CCCCCCHHHHHHHHHHHHhCCc
Confidence 99999866 4444444566777777777644
No 447
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=64.71 E-value=13 Score=40.24 Aligned_cols=58 Identities=10% Similarity=0.102 Sum_probs=37.2
Q ss_pred CCcceeeeccccccccccCCH-HHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceee
Q 017983 281 RTYDLLHSSFLLSDVTQRCDI-ADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTN 342 (363)
Q Consensus 281 ~sFDlVh~~~~l~~~~~~~~~-~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~ 342 (363)
..||+++.. .|+.-.+++.. ++++.+|.|.++|||.++--.... .|++-+..-..++.
T Consensus 165 ~~~d~~~lD-~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~a~---~vr~~l~~~GF~v~ 223 (662)
T PRK01747 165 ARADAWFLD-GFAPAKNPDMWSPNLFNALARLARPGATLATFTSAG---FVRRGLQEAGFTVR 223 (662)
T ss_pred ccccEEEeC-CCCCccChhhccHHHHHHHHHHhCCCCEEEEeehHH---HHHHHHHHcCCeee
Confidence 568988865 56654444332 689999999999999988543322 34444444444443
No 448
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=64.23 E-value=33 Score=33.54 Aligned_cols=90 Identities=21% Similarity=0.211 Sum_probs=51.2
Q ss_pred CceEEEecccc-cHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeeccccccC---CCCCCCcceeeecccccc
Q 017983 221 VRNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESF---NTYPRTYDLLHSSFLLSD 294 (363)
Q Consensus 221 ~r~VLDvGCG~-G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~---lpfp~sFDlVh~~~~l~~ 294 (363)
..+||=+|+|. |.+++.+++ .++.+..+...+.+ +-++.+.+-|...+ +.-+.. ....+.||+|+-...
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~g--- 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEATG--- 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECcC---
Confidence 35888888864 446666655 35444333333323 56677777775322 111100 001145787765421
Q ss_pred ccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 295 VTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 295 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
. ...+.+..++|||||.+++.
T Consensus 248 --~----~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 248 --V----PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred --C----HHHHHHHHHHccCCcEEEEE
Confidence 1 23788999999999999874
No 449
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=64.08 E-value=17 Score=34.47 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=40.7
Q ss_pred HHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeeeecceEEEEEec
Q 017983 301 IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKG 354 (363)
Q Consensus 301 ~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~~~~~li~~K~ 354 (363)
....+.|+.|||+++|.+++...-.....+...++.+.|+..- ..||.|+
T Consensus 78 ~~~~~~~~~rvl~~~~~~~v~~~~~~~~~~~~~~~~~gf~~~~----~iiw~k~ 127 (302)
T COG0863 78 LLQWLAEQKRVLKPGGSLYVIDPFSNLARIEDIAKKLGFEILG----KIIWKKP 127 (302)
T ss_pred HHHHHHHhhheecCCCEEEEECCchhhhHHHHHHHhCCCeEee----eEEEeCC
Confidence 4678999999999999999999888888888888878887654 4455554
No 450
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=64.02 E-value=37 Score=33.09 Aligned_cols=85 Identities=13% Similarity=-0.042 Sum_probs=49.0
Q ss_pred CceEEEecccc-cHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCCCCcceeeeccccccccc
Q 017983 221 VRNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ 297 (363)
Q Consensus 221 ~r~VLDvGCG~-G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~ 297 (363)
..+||=.|+|. |.+++.+++ .++.+ +..+.+ +-++.+++-|...++.. .. +-++.||+++-...
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~v---i~~~~~~~~~~~a~~~Ga~~vi~~--~~--~~~~~~d~~i~~~~------ 232 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATV---HVMTRGAAARRLALALGAASAGGA--YD--TPPEPLDAAILFAP------ 232 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeE---EEEeCChHHHHHHHHhCCceeccc--cc--cCcccceEEEECCC------
Confidence 35899889763 334455554 45443 333443 55777888775332221 00 11255786543211
Q ss_pred cCCHHHHHHHHhHhccCCeEEEEE
Q 017983 298 RCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 298 ~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
....+.+..+.|||||.+++.
T Consensus 233 ---~~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 ---AGGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred ---cHHHHHHHHHhhCCCcEEEEE
Confidence 123788899999999999874
No 451
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=63.91 E-value=19 Score=30.96 Aligned_cols=50 Identities=14% Similarity=0.296 Sum_probs=36.4
Q ss_pred HHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeeee-----cceEEEEEec
Q 017983 302 ADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY-----HDQFLVGKKG 354 (363)
Q Consensus 302 ~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~-----~~~~li~~K~ 354 (363)
.+++.+|.|+++|||.+.--.... .|++-+....+++... +...+++.|+
T Consensus 70 ~e~~~~l~~~~~~~~~l~Tys~a~---~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 70 EELFKKLARLSKPGGTLATYSSAG---AVRRALQQAGFEVEKVPGFGRKREMLRAVKP 124 (124)
T ss_dssp HHHHHHHHHHEEEEEEEEES--BH---HHHHHHHHCTEEEEEEE-STTSSEEEEEEC-
T ss_pred HHHHHHHHHHhCCCcEEEEeechH---HHHHHHHHcCCEEEEcCCCCCcchheEEEcC
Confidence 579999999999999887654433 5777777777777655 6677777774
No 452
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=63.02 E-value=6.4 Score=40.29 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=18.2
Q ss_pred CCCCCCCCccEEEeCCccccccc
Q 017983 32 KLTFPDDAYDLIHCARCRVHWDA 54 (363)
Q Consensus 32 ~LPfpd~sFD~v~cs~~~~~~~~ 54 (363)
.==||++|.+++|++.|+ ||..
T Consensus 155 ~RLfP~~Slh~~~Ss~sl-HWLS 176 (386)
T PLN02668 155 RRLFPARSIDVFHSAFSL-HWLS 176 (386)
T ss_pred ccccCCCceEEEEeeccc-eecc
Confidence 335999999999999877 8854
No 453
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=62.57 E-value=37 Score=32.38 Aligned_cols=89 Identities=16% Similarity=0.108 Sum_probs=49.1
Q ss_pred CceEEEeccc-ccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-CCcceeeecccccccc
Q 017983 221 VRNVMDMNAS-YGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVT 296 (363)
Q Consensus 221 ~r~VLDvGCG-~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~ 296 (363)
..+||-.||| .|..+..++. .++.+. ..+.+ +.++.+.+.|....+..--.....-. +.+|+++.. +..
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~~G~~v~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~-~~~--- 235 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARAMGFETV---AITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVT-VVS--- 235 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE---EEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEEC-CCc---
Confidence 3588888886 5655555555 355443 33333 55666655553222211000000002 468877642 111
Q ss_pred ccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 297 QRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 297 ~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
...+.++.|.|+++|.++..
T Consensus 236 -----~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 236 -----GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred -----HHHHHHHHHhcccCCEEEEE
Confidence 23788899999999999875
No 454
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=61.89 E-value=35 Score=32.56 Aligned_cols=89 Identities=17% Similarity=0.117 Sum_probs=49.2
Q ss_pred CceEEEeccc-ccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeeccccccC----CCCC-CCcceeeecccc
Q 017983 221 VRNVMDMNAS-YGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESF----NTYP-RTYDLLHSSFLL 292 (363)
Q Consensus 221 ~r~VLDvGCG-~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~----lpfp-~sFDlVh~~~~l 292 (363)
..+||-.|+| .|..++.+++ .++.. +...+.+ +..+.+.+.|....+.. .+.. ...+ +.+|+++....
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~~G~~~--v~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~vd~v~~~~~- 235 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKLNGASR--VTVAEPNEEKLELAKKLGATETVDP-SREDPEAQKEDNPYGFDVVIEATG- 235 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcE--EEEECCCHHHHHHHHHhCCeEEecC-CCCCHHHHHHhcCCCCcEEEECCC-
Confidence 3588998865 2444444544 34431 2222333 56666666665322221 1110 0113 67898875311
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
. ...+.++.|.|+++|.++..
T Consensus 236 ~--------~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 236 V--------PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred C--------hHHHHHHHHHHhcCCEEEEE
Confidence 1 24889999999999999864
No 455
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=61.41 E-value=5.6 Score=37.26 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=49.1
Q ss_pred ceEEEecccccHHHHHhhcC--CCeEEEEeecCCcchHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeecccc
Q 017983 222 RNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL 292 (363)
Q Consensus 222 r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l 292 (363)
..+-|+|+|+|-++..-+++ .|.++...|. ....|.+. |+ +.++.. ..+.|. ...|+|+|..+=
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk----~a~~a~eN~~v~g~~n~evv~g---DA~~y~fe~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPK----RARLAEENLHVPGDVNWEVVVG---DARDYDFENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcH----HHHHhhhcCCCCCCcceEEEec---ccccccccccceeHHHHhh
Confidence 47999999999754433332 2333333222 22233332 22 223332 247788 899999997543
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEE
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLV 320 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii 320 (363)
..+-.. .-..+|.-+-..||-.|+++=
T Consensus 107 TaLi~E-~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 107 TALIEE-KQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhcc-cccHHHHHHHHHhhcCCcccc
Confidence 333221 123455555557788887763
No 456
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=59.89 E-value=17 Score=37.45 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeecccC----CCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGTQ----KLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~----~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s 76 (363)
-|.|+.+++.|.+. |+. +.+...++. .+||++++||+|++.- |... ....+..+.+ |+|++.+++|
T Consensus 325 vD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP---Pr~g-~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 325 VEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP---PRAG-AAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred EeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc---CCcC-hHHHHHHHHh-cCCCeEEEEE
Confidence 48899999988864 554 555566643 3568788999998742 1111 1234444444 6999999999
Q ss_pred eCC
Q 017983 77 ATP 79 (363)
Q Consensus 77 ~~~ 79 (363)
..|
T Consensus 400 Cnp 402 (443)
T PRK13168 400 CNP 402 (443)
T ss_pred eCh
Confidence 664
No 457
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=59.71 E-value=16 Score=30.00 Aligned_cols=80 Identities=21% Similarity=0.248 Sum_probs=49.0
Q ss_pred cccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeeccccc----cC-CCCC-CCcceeeeccccccccccCCH
Q 017983 230 SYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCE----SF-NTYP-RTYDLLHSSFLLSDVTQRCDI 301 (363)
Q Consensus 230 G~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e----~~-lpfp-~sFDlVh~~~~l~~~~~~~~~ 301 (363)
|.|.++..+++ .+. +|+.++.+ .-++.+.+-|...++..... .. -.++ +.+|+|+=.-. -
T Consensus 1 ~vG~~a~q~ak~~G~---~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g---------~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGA---KVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG---------S 68 (130)
T ss_dssp HHHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS---------S
T ss_pred ChHHHHHHHHHHcCC---EEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC---------c
Confidence 56778877776 343 34555555 57788888775332221000 00 0133 57887763311 1
Q ss_pred HHHHHHHhHhccCCeEEEEE
Q 017983 302 ADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 302 ~~~L~Em~RVLRPGG~lii~ 321 (363)
...+.+...+|||||.+++.
T Consensus 69 ~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHhccCCEEEEE
Confidence 45999999999999999986
No 458
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=59.46 E-value=53 Score=33.72 Aligned_cols=107 Identities=10% Similarity=0.055 Sum_probs=61.7
Q ss_pred CceEEEecccccHHHHHhhcCCC--e------------------------------E-----E-EEeecCCc-chHHHHH
Q 017983 221 VRNVMDMNASYGGFAAALIDQPL--W------------------------------V-----M-NVVPIDAP-DTLSIIF 261 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~~~v--~------------------------------v-----~-~v~~~d~s-~~L~~a~ 261 (363)
....+|==||+|+|+.+.+-... - . . -+.++|.. .+++.|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 36899999999998765442210 0 0 0 15588887 7887665
Q ss_pred hc----Cc---eeeeccccccCCCCC-CCcceeeec--cccccccccCCHH----HHHHHHhHhccCCeEEEEEcCHHHH
Q 017983 262 DR----GL---IGMYHDWCESFNTYP-RTYDLLHSS--FLLSDVTQRCDIA----DVAVEMDRILRPGGYVLVQDTLEMI 327 (363)
Q Consensus 262 ~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~--~~l~~~~~~~~~~----~~L~Em~RVLRPGG~lii~D~~~~~ 327 (363)
.- |+ |........ .++=| +.+|+|+|+ +... +.....++ .+..+|.|.++--+.++++......
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~-~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e~~~ 349 (381)
T COG0116 272 ANARAAGVGDLIEFKQADAT-DLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSEDLL 349 (381)
T ss_pred HHHHhcCCCceEEEEEcchh-hCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhcCCceEEEEccHHHH
Confidence 43 54 333322222 24334 899999997 2221 11222232 3445666777777788888776644
Q ss_pred HH
Q 017983 328 NK 329 (363)
Q Consensus 328 ~~ 329 (363)
..
T Consensus 350 ~~ 351 (381)
T COG0116 350 FC 351 (381)
T ss_pred HH
Confidence 33
No 459
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.87 E-value=21 Score=34.25 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=30.6
Q ss_pred CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983 35 FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 35 fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s 76 (363)
.+.++||+|+.- ||-++-...+.+..|.||+||.+++-
T Consensus 145 ~~~~tfDfaFvD----adK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 145 GESGTFDFAFVD----ADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred CCCCceeEEEEc----cchHHHHHHHHHHHhhcccccEEEEe
Confidence 478999999864 56544346889999999999999985
No 460
>PLN02476 O-methyltransferase
Probab=58.46 E-value=6.3 Score=38.55 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHH----cCCC--ceeeeccc-CCCC-C----CCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEE
Q 017983 7 DEHEAQIQFALE----RGIP--AILSVIGT-QKLT-F----PDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFI 74 (363)
Q Consensus 7 D~~~~qvq~A~e----rg~p--~~~~~~~~-~~LP-f----pd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~ 74 (363)
|.++...+.|++ .|+. +.+...++ +-|| + .+++||+|+.-. +...-..++..+.+.|||||.++
T Consensus 150 E~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV 225 (278)
T PLN02476 150 ERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDA----DKRMYQDYFELLLQLVRVGGVIV 225 (278)
T ss_pred ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECC----CHHHHHHHHHHHHHhcCCCcEEE
Confidence 344555555543 3765 44444443 3343 2 246899998642 22112357888999999999998
Q ss_pred EE
Q 017983 75 WS 76 (363)
Q Consensus 75 ~s 76 (363)
+-
T Consensus 226 ~D 227 (278)
T PLN02476 226 MD 227 (278)
T ss_pred Ee
Confidence 74
No 461
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=57.92 E-value=22 Score=34.26 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=36.5
Q ss_pred eEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCce-eeeccccccCCCC--CCCcceeeec
Q 017983 223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLI-GMYHDWCESFNTY--PRTYDLLHSS 289 (363)
Q Consensus 223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~-~~~~d~~e~~lpf--p~sFDlVh~~ 289 (363)
+|+|+-||.|++...|...+..+ +..+|........+++..- ..+........+. ...+|+++++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~--v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEI--VAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEE--EEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeC
Confidence 69999999999988888776543 4555655222223333321 1111111122221 3469999976
No 462
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=57.90 E-value=6.7 Score=33.31 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=18.8
Q ss_pred CCceEEEecccccHHHHHhhcCCCe
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLW 244 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~ 244 (363)
+...-.|+|||.|-+.--|...|..
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~ 82 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYP 82 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCC
Confidence 3457899999999887777765543
No 463
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=56.65 E-value=12 Score=38.22 Aligned_cols=43 Identities=23% Similarity=0.493 Sum_probs=33.8
Q ss_pred CCCCCccEEEeCCcccccccC--CCchhhhhcccccCCeEEEEEeC
Q 017983 35 FPDDAYDLIHCARCRVHWDAQ--GGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 35 fpd~sFD~v~cs~~~~~~~~~--~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
.|+++||.++-+... .|-++ -...+.++.|+++|||++++-+-
T Consensus 291 ~~~~s~~~~vL~D~~-Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 291 LPPGSFDRFVLSDHM-DWMDPEQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred CCCCCeeEEEecchh-hhCCHHHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 688999999887654 56543 24678999999999999999744
No 464
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=55.80 E-value=15 Score=34.84 Aligned_cols=54 Identities=28% Similarity=0.344 Sum_probs=38.4
Q ss_pred HHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 17 LERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 17 ~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
.++|-+. +.+.+....-=+.+-||.|||... .....+++.-.|+|||.+++-.-
T Consensus 141 ~~~~~l~-ivvGDgr~g~~e~a~YDaIhvGAa-------a~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 141 LKRGELS-IVVGDGRKGYAEQAPYDAIHVGAA-------ASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred hccCceE-EEeCCccccCCccCCcceEEEccC-------ccccHHHHHHhhccCCeEEEeec
Confidence 3455333 335566666667889999999722 34688899999999999988643
No 465
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=55.76 E-value=37 Score=31.89 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=15.1
Q ss_pred CceEEEecccccHHHHHhh
Q 017983 221 VRNVMDMNASYGGFAAALI 239 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~ 239 (363)
..+|||+||-+|++..--.
T Consensus 70 ~~~VlD~G~APGsWsQVav 88 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAV 88 (232)
T ss_pred CCEEEEccCCCChHHHHHH
Confidence 4699999999999865443
No 466
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=54.59 E-value=47 Score=35.32 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=57.7
Q ss_pred CCceEEEecccccHHHHHhhc--CCCeEEEEeecCCc-chHHHHHhcCceeeeccccccC---------C----------
Q 017983 220 SVRNVMDMNASYGGFAAALID--QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESF---------N---------- 277 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~--~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~---------l---------- 277 (363)
...+|+=+|||.-++++.... .+. .|...|.. +.++.+.+-|......+..+.. +
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA---~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA---IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 357999999999886654332 454 36667777 6788887777531111100000 0
Q ss_pred CCC---CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 278 TYP---RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 278 pfp---~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
.|. +.+|+|+..-....-+. ..-+..|+-+.+||||.++..
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~a---P~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPA---PKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccC---cchHHHHHHHhcCCCCEEEEE
Confidence 111 46999998744432111 122459999999999998764
No 467
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=53.73 E-value=29 Score=34.63 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=58.3
Q ss_pred CCceEEEecccccHHHHHhhcCCCeEEEEeecCCcch---HHHHHhcCc--------ee-eeccccccCC-CCC-CCcce
Q 017983 220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDT---LSIIFDRGL--------IG-MYHDWCESFN-TYP-RTYDL 285 (363)
Q Consensus 220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~---L~~a~~Rgl--------~~-~~~d~~e~~l-pfp-~sFDl 285 (363)
++++||=||-|-|++.+..+.+. .+-++.-.+.-.+ +...+-+.+ +. ..+|... ++ -++ ++||+
T Consensus 121 npkkvlVVgggDggvlrevikH~-~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~-fl~~~~~~~~dV 198 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHK-SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL-FLEDLKENPFDV 198 (337)
T ss_pred CCCeEEEEecCCccceeeeeccc-cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH-HHHHhccCCceE
Confidence 46899999999999998888763 3334443333322 222232222 11 1222211 12 255 99999
Q ss_pred eeeccccccccccCC--HHHHHHHHhHhccCCeEEEEEc
Q 017983 286 LHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 286 Vh~~~~l~~~~~~~~--~~~~L~Em~RVLRPGG~lii~D 322 (363)
|+....= .....|. .+.+..-|.+-|||||++++..
T Consensus 199 ii~dssd-pvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSD-PVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecCC-ccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9975221 1111121 2557788999999999999874
No 468
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=51.44 E-value=14 Score=37.35 Aligned_cols=45 Identities=24% Similarity=0.241 Sum_probs=36.6
Q ss_pred cCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeC
Q 017983 30 TQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 30 ~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
.+..|=.| +|++-.|++||+|++ .++|+=+..-|+|||.+++-..
T Consensus 231 fq~~P~~d----aI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 231 FQDTPKGD----AIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred cccCCCcC----eEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 34466554 999999999999754 6788899999999999999744
No 469
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=51.41 E-value=19 Score=34.86 Aligned_cols=117 Identities=14% Similarity=0.155 Sum_probs=60.6
Q ss_pred CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHH---HHhc-Cc-e-eeeccccccCCC-CC-CCcceeeec
Q 017983 219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSI---IFDR-GL-I-GMYHDWCESFNT-YP-RTYDLLHSS 289 (363)
Q Consensus 219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~---a~~R-gl-~-~~~~d~~e~~lp-fp-~sFDlVh~~ 289 (363)
+..++|||+|||.=-++.........+ .+.++|.. .+.++ .... |. . ..+.| .+. -| .+.|+.+.-
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a-~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~D----l~~~~~~~~~DlaLll 178 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGA-TYIAYDIDSQLVEFLNAFLAVLGVPHDARVRD----LLSDPPKEPADLALLL 178 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT--EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-----TTTSHTTSEESEEEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCc-EEEEEeCCHHHHHHHHHHHHhhCCCcceeEee----eeccCCCCCcchhhHH
Confidence 346899999999999988776543211 46778877 44443 2222 21 1 12233 222 24 889998876
Q ss_pred cccccccccCCHHHHHHHHhHhccCCeEEEEEcCH------------HHHHHHHHHHHhCCceeee
Q 017983 290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------EMINKLKPVLHSLQWSTNI 343 (363)
Q Consensus 290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~l~~~l~W~~~~ 343 (363)
-+++-+..... ..-.++-.-++ .=+++||-.. ..-..++.++..-.|.+.-
T Consensus 179 K~lp~le~q~~--g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~ 241 (251)
T PF07091_consen 179 KTLPCLERQRR--GAGLELLDALR-SPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDR 241 (251)
T ss_dssp T-HHHHHHHST--THHHHHHHHSC-ESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHHHHHhc--chHHHHHHHhC-CCeEEEeccccccccCccccccCHHHHHHHhcccCCceeee
Confidence 55554332111 12222222222 3456776431 2456788888888887543
No 470
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=50.88 E-value=8.4 Score=31.70 Aligned_cols=65 Identities=22% Similarity=0.357 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHcCCCceeeeccc---CCC--CCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 7 DEHEAQIQFALERGIPAILSVIGT---QKL--TFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 7 D~~~~qvq~A~erg~p~~~~~~~~---~~L--Pfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
|.++...++|++.|....+..... +++ .++.+.+|+|+=.-. .+..+.+...+|||||.+++.+-
T Consensus 21 ~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-------~~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 21 DRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-------SGDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp ESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-------SHHHHHHHHHHEEEEEEEEEESS
T ss_pred ECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-------cHHHHHHHHHHhccCCEEEEEEc
Confidence 457777888888884333332221 111 244468999973211 13699999999999999999855
No 471
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=50.86 E-value=29 Score=32.15 Aligned_cols=60 Identities=23% Similarity=0.197 Sum_probs=40.4
Q ss_pred HHHHHHc-CCCceeeecc-c-CCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983 13 IQFALER-GIPAILSVIG-T-QKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT 78 (363)
Q Consensus 13 vq~A~er-g~p~~~~~~~-~-~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~ 78 (363)
++.-.+| |+++...+.+ + +.|+=.+ +||.|+-.-. .+ ....|..+..-|||||++++-.-
T Consensus 74 ~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg-~~----i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 74 IERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG-GN----IEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred HHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCC-CC----HHHHHHHHHHHcCcCCeEEEEee
Confidence 3333344 8886655555 3 4455222 8999997654 22 34688999999999999999744
No 472
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=50.16 E-value=6.1 Score=40.53 Aligned_cols=72 Identities=24% Similarity=0.265 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHc----CCC---ceeeeccc-CCCCCCCC---CccEEEe---CCccc---cccc--CCCchhhhhcccc
Q 017983 7 DEHEAQIQFALER----GIP---AILSVIGT-QKLTFPDD---AYDLIHC---ARCRV---HWDA--QGGKPLLELNRIL 67 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p---~~~~~~~~-~~LPfpd~---sFD~v~c---s~~~~---~~~~--~~~~~l~E~~RVL 67 (363)
|.|..-++-|+|. |++ ..+.+.|+ +-|..... .||+|+. ++..- -|.. +-...+....++|
T Consensus 247 D~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL 326 (393)
T COG1092 247 DLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLL 326 (393)
T ss_pred eccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHc
Confidence 7777788888765 543 45666663 33554444 9999997 11110 0211 1125788899999
Q ss_pred cCCeEEEEEeC
Q 017983 68 RPGGFFIWSAT 78 (363)
Q Consensus 68 rPGG~~~~s~~ 78 (363)
+|||.+++|+-
T Consensus 327 ~pgG~l~~~s~ 337 (393)
T COG1092 327 APGGTLVTSSC 337 (393)
T ss_pred CCCCEEEEEec
Confidence 99999999865
No 473
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=49.22 E-value=76 Score=30.42 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=48.9
Q ss_pred CceEEEecccc-cHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeecccccc--CCCCC-CCcceeeecccccc
Q 017983 221 VRNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCES--FNTYP-RTYDLLHSSFLLSD 294 (363)
Q Consensus 221 ~r~VLDvGCG~-G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~--~lpfp-~sFDlVh~~~~l~~ 294 (363)
..+||-.|||. |.+++.+++ .++. .+..++.+ +..+.+.+.|...++..-.+. .+... +.||+++-....
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~--~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~-- 241 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAA--EIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA-- 241 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC--
Confidence 46888888764 445555554 3441 13333444 455555555542222210000 11112 448888753211
Q ss_pred ccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 295 VTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 295 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
...+.++.+.|+++|.++..
T Consensus 242 -------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 242 -------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred -------HHHHHHHHHHHhcCCEEEEE
Confidence 23788999999999999864
No 474
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=48.79 E-value=26 Score=35.78 Aligned_cols=69 Identities=13% Similarity=0.100 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeecccCC----CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGTQK----LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~----LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s 76 (363)
-|.++..++.|++. |+. +.+...++.. +++.+++||+|+..--... -...++.++.+ |+|++.+++|
T Consensus 320 vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G---~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 320 IEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKG---CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred EEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCC---CCHHHHHHHHh-cCCCEEEEEc
Confidence 47888888888764 554 4455555433 4566788999987422111 01245555554 8999988888
Q ss_pred eC
Q 017983 77 AT 78 (363)
Q Consensus 77 ~~ 78 (363)
..
T Consensus 396 c~ 397 (431)
T TIGR00479 396 CN 397 (431)
T ss_pred CC
Confidence 55
No 475
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=48.51 E-value=45 Score=29.94 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=37.8
Q ss_pred C-CCcceeeecccccccc------------ccCCHHHHHHHHhHhccCCeEEEEEcCHH---HHHHHHHHHHhCCc
Q 017983 280 P-RTYDLLHSSFLLSDVT------------QRCDIADVAVEMDRILRPGGYVLVQDTLE---MINKLKPVLHSLQW 339 (363)
Q Consensus 280 p-~sFDlVh~~~~l~~~~------------~~~~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~l~~~l~W 339 (363)
. +.||.|+-+ |.|.. ++.-+..++.-..++|+|+|.+.|+=... ..=.|+++|..-..
T Consensus 72 ~~~~FDrIiFN--FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl 145 (166)
T PF10354_consen 72 KNQRFDRIIFN--FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGL 145 (166)
T ss_pred cCCcCCEEEEe--CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCC
Confidence 5 999999865 56654 11234677888999999999999983221 12234566655433
No 476
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=48.45 E-value=52 Score=32.72 Aligned_cols=88 Identities=22% Similarity=0.195 Sum_probs=54.6
Q ss_pred eEEEecccccHHH-HHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeeccccc-----cCCCCC--CCcceeeecccc
Q 017983 223 NVMDMNASYGGFA-AALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCE-----SFNTYP--RTYDLLHSSFLL 292 (363)
Q Consensus 223 ~VLDvGCG~G~fa-a~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e-----~~lpfp--~sFDlVh~~~~l 292 (363)
+|+=+|||+=++. +.+++ .+.. .|+.+|.+ +-|+.|.+.+-...+.+--+ ..+... +-||+|+=...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~--~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGAS--VVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCc--eEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 9999999975554 44444 3332 35566777 78999988553211111000 001122 46898875433
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
...++.+.-+.+||||.+++-
T Consensus 248 --------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 248 --------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred --------CHHHHHHHHHHhcCCCEEEEE
Confidence 134899999999999999885
No 477
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=48.35 E-value=59 Score=29.39 Aligned_cols=90 Identities=21% Similarity=0.234 Sum_probs=50.0
Q ss_pred CceEEEecccc-cHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeeccccccC----CCCC-CCcceeeecccc
Q 017983 221 VRNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESF----NTYP-RTYDLLHSSFLL 292 (363)
Q Consensus 221 ~r~VLDvGCG~-G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~----lpfp-~sFDlVh~~~~l 292 (363)
..+||..|+|. |..++.++. .+..+ ...+.+ +..+.+.+.|....+...-... .... +.||+++...
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~~v---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~-- 209 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGARV---IVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAV-- 209 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeE---EEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECC--
Confidence 46899999985 555555554 34443 333433 4555555555322221100000 0112 6789887531
Q ss_pred ccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQD 322 (363)
Q Consensus 293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 322 (363)
. . ...+..+.+.|+++|.++...
T Consensus 210 ~---~----~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 210 G---G----PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred C---C----HHHHHHHHHhcccCCEEEEEc
Confidence 1 1 136777889999999998764
No 478
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=48.23 E-value=50 Score=32.22 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=29.8
Q ss_pred eeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 285 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 285 lVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
.|....+|+|+++.++...++......|-||.+++|+
T Consensus 153 avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~is 189 (267)
T PF04672_consen 153 AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAIS 189 (267)
T ss_dssp EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEE
T ss_pred eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEE
Confidence 4666778999998888999999999999999999998
No 479
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=48.15 E-value=23 Score=36.16 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983 6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV 80 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~ 80 (363)
.|.++..++.|.+. |+. ..+...++..+....+.||+|+.- |+ ..+..++..+.+.++|||.+++|.+..
T Consensus 87 ~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD----P~-Gs~~~~l~~al~~~~~~gilyvSAtD~ 161 (382)
T PRK04338 87 NDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID----PF-GSPAPFLDSAIRSVKRGGLLCVTATDT 161 (382)
T ss_pred EeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC----CC-CCcHHHHHHHHHHhcCCCEEEEEecCc
Confidence 57788888777643 555 336666665542214679999874 32 223467777788899999999996643
No 480
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=46.25 E-value=27 Score=34.47 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=45.6
Q ss_pred CCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC-CCCC-CChhhHHHHHHHHHHHhhcceEEEEE
Q 017983 37 DDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT-PVYR-HDDRHRSVWNAMVNLTESMCWKAVAR 108 (363)
Q Consensus 37 d~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~-~~~~-~~~e~~~~~~~~~~l~~~~cw~~~~~ 108 (363)
.+-||+|+.+...+|.. --|+.++++|||.|++-+. -+-. ........-+++.+||+...|+-+..
T Consensus 220 ~~~Fd~ifvs~s~vh~L------~p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~~~ 287 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFL------KPELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPVTN 287 (289)
T ss_pred cCCCCEEEEhhhhHhhc------chHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccccc
Confidence 48899999776655532 2258889999999999875 1111 22223344678999999999876543
No 481
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=46.06 E-value=1.3e+02 Score=27.80 Aligned_cols=101 Identities=10% Similarity=0.100 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHc----CCC-ceeeecccC-CCCCCCCCccEEEeCCcccccccCC-Cchhhhh--cccccCCeEEEEEe
Q 017983 7 DEHEAQIQFALER----GIP-AILSVIGTQ-KLTFPDDAYDLIHCARCRVHWDAQG-GKPLLEL--NRILRPGGFFIWSA 77 (363)
Q Consensus 7 D~~~~qvq~A~er----g~p-~~~~~~~~~-~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~--~RVLrPGG~~~~s~ 77 (363)
|.++..++.|.+. |+. +.+...++. .++..+.+||+|++.- |+.... ..++.-+ ..+|+|+|.++++.
T Consensus 83 E~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP---Py~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 83 EMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDP---PFRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred ECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECC---CCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 4455555554432 443 445555543 2444456799999852 222110 1122222 23478999999986
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhcceEEEEEecCCCceeEEEEecCC
Q 017983 78 TPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPV 124 (363)
Q Consensus 78 ~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~ 124 (363)
+... ..++ + .-.|++..++ .-....+.+|+++.
T Consensus 160 ~~~~-~~~~----------~--~~~~~~~~~k-~yG~s~~~~~~~~~ 192 (199)
T PRK10909 160 EVEN-GLPT----------V--PANWQLHREK-VAGQVAYRLYIREA 192 (199)
T ss_pred cCCC-Cccc----------C--CCccEEEEEe-cCCCEEEEEEEECC
Confidence 6321 1111 0 1136665543 22234688898754
No 482
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=45.57 E-value=70 Score=30.27 Aligned_cols=92 Identities=14% Similarity=0.089 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHHcCCCce-eeecccCC-----CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983 6 KDEHEAQIQFALERGIPAI-LSVIGTQK-----LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP 79 (363)
Q Consensus 6 ~D~~~~qvq~A~erg~p~~-~~~~~~~~-----LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~ 79 (363)
-|.+..|+...+...-.+. ....+.+. ++..-..||++++|+++ .|..+.+.|+| |.+++-.-|
T Consensus 104 vD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~---------~l~~i~~~l~~-~~~~~L~KP 173 (228)
T TIGR00478 104 VDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS---------ILPELDLLLNP-NDLTLLFKP 173 (228)
T ss_pred EeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh---------HHHHHHHHhCc-CeEEEEcCh
Confidence 3788888887555542222 22223333 32222477888777543 57889999999 888876555
Q ss_pred CCCCChh-------------hHHHHHHHHHHHhhcceEEEE
Q 017983 80 VYRHDDR-------------HRSVWNAMVNLTESMCWKAVA 107 (363)
Q Consensus 80 ~~~~~~e-------------~~~~~~~~~~l~~~~cw~~~~ 107 (363)
.+.-.++ .....+.+...+....|....
T Consensus 174 qFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (228)
T TIGR00478 174 QFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKK 214 (228)
T ss_pred HhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEee
Confidence 5432221 122244555556666666544
No 483
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=45.20 E-value=2.8e+02 Score=26.48 Aligned_cols=125 Identities=11% Similarity=0.059 Sum_probs=78.3
Q ss_pred eEEEecccccHHHHHhhcCCCeEEEEeecCCc-c----hHHHHHhcCceeeeccccc-cCCCCC--CCcceeeecccccc
Q 017983 223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-D----TLSIIFDRGLIGMYHDWCE-SFNTYP--RTYDLLHSSFLLSD 294 (363)
Q Consensus 223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~----~L~~a~~Rgl~~~~~d~~e-~~lpfp--~sFDlVh~~~~l~~ 294 (363)
++.|+||=-|.+..+|...+.. ..++..+.. . ......+-++.......+. -+.++. ..+|.++.+.+=-.
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~-~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG~ 97 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPA-STAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGGT 97 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCc-ceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcHH
Confidence 4999999999999999986531 123333333 2 2333333444221111111 234565 48999988765442
Q ss_pred ccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeeee---c-----ceEEEEEec
Q 017983 295 VTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY---H-----DQFLVGKKG 354 (363)
Q Consensus 295 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~---~-----~~~li~~K~ 354 (363)
.+..+|.|-..-|+-=-++++.-. .-...+++-+....|..+.+ . -.|+++.|.
T Consensus 98 -----lI~~ILee~~~~l~~~~rlILQPn-~~~~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e~~ 159 (226)
T COG2384 98 -----LIREILEEGKEKLKGVERLILQPN-IHTYELREWLSANSYEIKAETILEEDGKIYEILVVEKS 159 (226)
T ss_pred -----HHHHHHHHhhhhhcCcceEEECCC-CCHHHHHHHHHhCCceeeeeeeecccCeEEEEEEEecC
Confidence 256788888888875556666543 33568899999999998876 2 246888876
No 484
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=44.72 E-value=41 Score=32.97 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHc-CCCc--------eeeeccc-CCCC-CCCCCccEEEeCCccccccc----CCCchhhhhcccccCCe
Q 017983 7 DEHEAQIQFALER-GIPA--------ILSVIGT-QKLT-FPDDAYDLIHCARCRVHWDA----QGGKPLLELNRILRPGG 71 (363)
Q Consensus 7 D~~~~qvq~A~er-g~p~--------~~~~~~~-~~LP-fpd~sFD~v~cs~~~~~~~~----~~~~~l~E~~RVLrPGG 71 (363)
|+.++-|..|++. +.+. .+...|+ +-+. ++. +||+|++-. .-+-.. ....++..+.|.|+|+|
T Consensus 107 EID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fDvIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~G 184 (282)
T COG0421 107 EIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFDVIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDG 184 (282)
T ss_pred EcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC-cCCEEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCc
Confidence 4566677777766 2221 2333333 2243 443 999999732 111000 01368899999999999
Q ss_pred EEEEE
Q 017983 72 FFIWS 76 (363)
Q Consensus 72 ~~~~s 76 (363)
.++.-
T Consensus 185 i~v~q 189 (282)
T COG0421 185 IFVAQ 189 (282)
T ss_pred EEEEe
Confidence 99987
No 485
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=44.67 E-value=24 Score=36.36 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=24.4
Q ss_pred CCCceEEEecccccHHHHHhhc-CCCeEEEEeecCCc
Q 017983 219 SSVRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP 254 (363)
Q Consensus 219 ~~~r~VLDvGCG~G~faa~L~~-~~v~v~~v~~~d~s 254 (363)
..+..|.|+|+|-|.++..|.= .+..| .++|.+
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV---~aIegs 185 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSV---KAIEGS 185 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceE---EEeccc
Confidence 3567999999999999998864 45444 455554
No 486
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=44.15 E-value=20 Score=34.13 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHcC-----C----CceeeecccCC-CCCCCC-CccEEEeCCcccccccC----CCchhhhhcccccCCe
Q 017983 7 DEHEAQIQFALERG-----I----PAILSVIGTQK-LTFPDD-AYDLIHCARCRVHWDAQ----GGKPLLELNRILRPGG 71 (363)
Q Consensus 7 D~~~~qvq~A~erg-----~----p~~~~~~~~~~-LPfpd~-sFD~v~cs~~~~~~~~~----~~~~l~E~~RVLrPGG 71 (363)
|+.+..++.|++-- . ...+...|+.. |--..+ .||+|+.-..- +.... -..+++.+.|.|+|||
T Consensus 107 EiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~G 185 (246)
T PF01564_consen 107 EIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDG 185 (246)
T ss_dssp ES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEE
T ss_pred ecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCC-CCCCcccccCHHHHHHHHhhcCCCc
Confidence 56677777776641 1 13344444322 222223 99999973322 22111 1368899999999999
Q ss_pred EEEEEeC
Q 017983 72 FFIWSAT 78 (363)
Q Consensus 72 ~~~~s~~ 78 (363)
.+++-..
T Consensus 186 v~v~~~~ 192 (246)
T PF01564_consen 186 VLVLQAG 192 (246)
T ss_dssp EEEEEEE
T ss_pred EEEEEcc
Confidence 9998653
No 487
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=44.03 E-value=71 Score=30.70 Aligned_cols=82 Identities=12% Similarity=0.040 Sum_probs=45.4
Q ss_pred ceEEEeccc-ccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCCCCcceeeecccccccccc
Q 017983 222 RNVMDMNAS-YGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR 298 (363)
Q Consensus 222 r~VLDvGCG-~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~ 298 (363)
.+||=+||| .|.+++.+++ .++.+ ++.++.. +.++.+...+. +.. .. .-.+.||+|+-.-. .
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~--v~~~~~~~~rl~~a~~~~~---i~~--~~--~~~~g~Dvvid~~G-----~- 210 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSP--PAVWETNPRRRDGATGYEV---LDP--EK--DPRRDYRAIYDASG-----D- 210 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCce--EEEeCCCHHHHHhhhhccc---cCh--hh--ccCCCCCEEEECCC-----C-
Confidence 467777876 3456666665 45543 2233433 45555543222 111 00 01256888775411 1
Q ss_pred CCHHHHHHHHhHhccCCeEEEEE
Q 017983 299 CDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 299 ~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
...+.+..+.|||||++++.
T Consensus 211 ---~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 211 ---PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred ---HHHHHHHHHhhhcCcEEEEE
Confidence 23678888999999999964
No 488
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=43.97 E-value=43 Score=29.54 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=37.7
Q ss_pred CCcceeeeccccccccc--------cCCHHHHHHHHhHhccCCeEEEEEc------CHHHHHHHHHHHHhC---Cceeee
Q 017983 281 RTYDLLHSSFLLSDVTQ--------RCDIADVAVEMDRILRPGGYVLVQD------TLEMINKLKPVLHSL---QWSTNI 343 (363)
Q Consensus 281 ~sFDlVh~~~~l~~~~~--------~~~~~~~L~Em~RVLRPGG~lii~D------~~~~~~~i~~l~~~l---~W~~~~ 343 (363)
+.+|+|+-+... +|. ...-..+|....+.|+|||.++|.- ..+..+.+.+.+.++ .|.+..
T Consensus 45 ~~v~~~iFNLGY--LPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~ 122 (140)
T PF06962_consen 45 GPVDAAIFNLGY--LPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLK 122 (140)
T ss_dssp --EEEEEEEESB---CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEE
T ss_pred CCcCEEEEECCc--CCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEE
Confidence 378888776433 331 1123578999999999999999862 234455566666554 455544
Q ss_pred e
Q 017983 344 Y 344 (363)
Q Consensus 344 ~ 344 (363)
.
T Consensus 123 ~ 123 (140)
T PF06962_consen 123 Y 123 (140)
T ss_dssp E
T ss_pred E
Confidence 3
No 489
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=43.92 E-value=26 Score=35.29 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983 7 DEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP 79 (363)
Q Consensus 7 D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~ 79 (363)
|.++.-.++|++-|-...+...+...+.--...||+|+..-. ...+....+.||+||++++.+-+
T Consensus 197 ~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~--------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 197 TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG--------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC--------hhhHHHHHHHHhcCCEEEEECCC
Confidence 678888889988886554443232222211123999986422 25788999999999999998654
No 490
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=43.84 E-value=65 Score=31.46 Aligned_cols=88 Identities=14% Similarity=0.058 Sum_probs=45.7
Q ss_pred CceEEEecccccH-HHHHhhcC--CCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCCCCcceeeecccccccc
Q 017983 221 VRNVMDMNASYGG-FAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVT 296 (363)
Q Consensus 221 ~r~VLDvGCG~G~-faa~L~~~--~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~ 296 (363)
..+||=+|||.=+ ++..++++ +.. .|+.++.+ +-++.+.+-+......+ ++-...||+|+=.-. .
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~--~vi~~~~~~~k~~~a~~~~~~~~~~~-----~~~~~g~d~viD~~G-~--- 232 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPES--KLVVFGKHQEKLDLFSFADETYLIDD-----IPEDLAVDHAFECVG-G--- 232 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCC--cEEEEeCcHhHHHHHhhcCceeehhh-----hhhccCCcEEEECCC-C---
Confidence 4589989987434 34444442 221 23333444 45555554232111111 110124787763211 0
Q ss_pred ccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 297 QRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 297 ~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
......+.+..+.|||||.+++.
T Consensus 233 --~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 233 --RGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred --CccHHHHHHHHHhCcCCcEEEEE
Confidence 00234788899999999999864
No 491
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.47 E-value=2.7e+02 Score=27.30 Aligned_cols=97 Identities=14% Similarity=0.223 Sum_probs=48.1
Q ss_pred EEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCce-e-eeccccccCCCCC-CCcceeeec---cccccccc
Q 017983 224 VMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLI-G-MYHDWCESFNTYP-RTYDLLHSS---FLLSDVTQ 297 (363)
Q Consensus 224 VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~-~-~~~d~~e~~lpfp-~sFDlVh~~---~~l~~~~~ 297 (363)
|+|+=||.|++...|...+..+ +..+|........+++..- . ...| .+...+-. ..+|++++. .-|+-...
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~--~~a~e~~~~a~~ty~~N~~~~~~~~D-i~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKC--VFASEIDKYAQKTYEANFGNKVPFGD-ITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeE--EEEEeCCHHHHHHHHHhCCCCCCccC-hhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 6899999999999998776544 3344443222222232211 1 1112 11111111 357888765 22221111
Q ss_pred ----cCCHHHHHHHHhHhc---cCCeEEEEEcCHH
Q 017983 298 ----RCDIADVAVEMDRIL---RPGGYVLVQDTLE 325 (363)
Q Consensus 298 ----~~~~~~~L~Em~RVL---RPGG~lii~D~~~ 325 (363)
.+....++.|+.|++ ||- +++.+.+.
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~ 110 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVK 110 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccH
Confidence 112234667777766 674 66666553
No 492
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=43.11 E-value=26 Score=34.98 Aligned_cols=77 Identities=13% Similarity=0.070 Sum_probs=47.9
Q ss_pred CCCcCCCCHHHHHHHHHcCC----C-ceee-ecc--c---CCCCC--CCCCccEEEeCCcc-cccccC-CCchhhhhcc-
Q 017983 2 SLAPKDEHEAQIQFALERGI----P-AILS-VIG--T---QKLTF--PDDAYDLIHCARCR-VHWDAQ-GGKPLLELNR- 65 (363)
Q Consensus 2 s~ap~D~~~~qvq~A~erg~----p-~~~~-~~~--~---~~LPf--pd~sFD~v~cs~~~-~~~~~~-~~~~l~E~~R- 65 (363)
.+.|-|+|+..++.|.++-. | +.+. ..+ . ..||= ..+.+.++..--.. -++... ...+|.++.+
T Consensus 106 ~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~ 185 (319)
T TIGR03439 106 DYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLAT 185 (319)
T ss_pred eEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHh
Confidence 36789999999999988633 4 2221 222 1 22322 22456777653322 233322 2468999999
Q ss_pred cccCCeEEEEEeC
Q 017983 66 ILRPGGFFIWSAT 78 (363)
Q Consensus 66 VLrPGG~~~~s~~ 78 (363)
.|+|||.|++..-
T Consensus 186 ~l~~~d~lLiG~D 198 (319)
T TIGR03439 186 ALSPSDSFLIGLD 198 (319)
T ss_pred hCCCCCEEEEecC
Confidence 9999999999854
No 493
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=42.73 E-value=54 Score=31.51 Aligned_cols=89 Identities=15% Similarity=0.079 Sum_probs=48.9
Q ss_pred ceEEEecccc-cHHHHHhhc-CCCeEEEEeecCCcchHHHHHhcCceeeec----cccccCCC-CC-CCcceeeeccccc
Q 017983 222 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAPDTLSIIFDRGLIGMYH----DWCESFNT-YP-RTYDLLHSSFLLS 293 (363)
Q Consensus 222 r~VLDvGCG~-G~faa~L~~-~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~----d~~e~~lp-fp-~sFDlVh~~~~l~ 293 (363)
.+||-.|+|. |.+++.|++ .++.+..++.. ++..+.+.+.|...++. ++.+.... .+ +.+|+++-... .
T Consensus 161 ~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s--~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g-~ 237 (337)
T cd08261 161 DTVLVVGAGPIGLGVIQVAKARGARVIVVDID--DERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATG-N 237 (337)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCC-C
Confidence 4888888763 556666665 35544333222 24555555555322221 10011011 13 55888764311 1
Q ss_pred cccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 294 DVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
...+.++.+.|+++|.++..
T Consensus 238 --------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 238 --------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred --------HHHHHHHHHHHhcCCEEEEE
Confidence 34789999999999998864
No 494
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=41.90 E-value=17 Score=34.83 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=25.3
Q ss_pred CCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983 37 DDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 37 d~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s 76 (363)
+++||+|+.-. +...-..++..+.+.|||||.+++=
T Consensus 154 ~~~fD~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 154 HGTFDFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred CCcccEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 36899998742 2222235677778999999998873
No 495
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=41.37 E-value=99 Score=30.20 Aligned_cols=107 Identities=18% Similarity=0.168 Sum_probs=68.3
Q ss_pred ceEEEecccc--cHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-CCcceeeeccccccccc
Q 017983 222 RNVMDMNASY--GGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ 297 (363)
Q Consensus 222 r~VLDvGCG~--G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~ 297 (363)
.+|.=+|.|- |.|+..|.+.+ +...+.+.|.+ ..+..+.+.|++..+.. ...--. ...|+|+.+-=+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g-~~v~i~g~d~~~~~~~~a~~lgv~d~~~~---~~~~~~~~~aD~VivavPi~---- 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAG-LVVRIIGRDRSAATLKAALELGVIDELTV---AGLAEAAAEADLVIVAVPIE---- 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcC-CeEEEEeecCcHHHHHHHhhcCccccccc---chhhhhcccCCEEEEeccHH----
Confidence 4666677663 45777777766 44467888888 78888888887543221 111123 6789998762222
Q ss_pred cCCHHHHHHHHhHhccCCeEEEE--EcCHHHHHHHHHHHHhCC
Q 017983 298 RCDIADVAVEMDRILRPGGYVLV--QDTLEMINKLKPVLHSLQ 338 (363)
Q Consensus 298 ~~~~~~~L~Em~RVLRPGG~lii--~D~~~~~~~i~~l~~~l~ 338 (363)
....+|.|+..-|+||-.+.= +....+++.+++......
T Consensus 76 --~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~ 116 (279)
T COG0287 76 --ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV 116 (279)
T ss_pred --HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC
Confidence 357799999999999975431 123456677777665544
No 496
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=40.22 E-value=1.5e+02 Score=29.54 Aligned_cols=99 Identities=18% Similarity=0.174 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHc----CCCceeeec----c---cCCCCCCCCCccEEEeCCcccccccCCC-----------------
Q 017983 6 KDEHEAQIQFALER----GIPAILSVI----G---TQKLTFPDDAYDLIHCARCRVHWDAQGG----------------- 57 (363)
Q Consensus 6 ~D~~~~qvq~A~er----g~p~~~~~~----~---~~~LPfpd~sFD~v~cs~~~~~~~~~~~----------------- 57 (363)
-|.|++.+..|.|. ++...+.+. . ....|.+++..|+++|+-=.+.- +|-.
T Consensus 178 iD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~-dD~~~l~~eV~~yEp~lALdG 256 (328)
T KOG2904|consen 178 IDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRK-DDNRQLKPEVRLYEPKLALDG 256 (328)
T ss_pred EeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccc-cchhhcCchheecCchhhhcc
Confidence 48899999888765 444344333 2 23345678999999996422221 1111
Q ss_pred ---------chhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983 58 ---------KPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARS 109 (363)
Q Consensus 58 ---------~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~ 109 (363)
.++.=+-|.|+|||++.+..-.- ++.....+.+......-|-..++-+
T Consensus 257 g~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~----~~~~~lv~~~m~s~~~d~~~~~~v~ 313 (328)
T KOG2904|consen 257 GLEGYDNLVHYWLLATRMLQPGGFEQLELVER----KEHSYLVRIWMISLKDDSNGKAAVV 313 (328)
T ss_pred ccchhHHHHHHHHhhHhhcccCCeEEEEeccc----ccCcHHHHHHHHhchhhccchhhee
Confidence 13344569999999999985521 2323344444444444444444433
No 497
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=39.73 E-value=14 Score=35.37 Aligned_cols=42 Identities=24% Similarity=0.361 Sum_probs=29.2
Q ss_pred CCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983 34 TFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS 76 (363)
Q Consensus 34 Pfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s 76 (363)
..||+.||-|.----..+. +|-..+...+.|.|||||.|-+-
T Consensus 164 ~L~d~~FDGI~yDTy~e~y-Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 164 TLPDKHFDGIYYDTYSELY-EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred cccccCcceeEeechhhHH-HHHHHHHHHHhhhcCCCceEEEe
Confidence 3789999999753222222 22334667889999999999876
No 498
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=39.38 E-value=94 Score=30.55 Aligned_cols=99 Identities=22% Similarity=0.371 Sum_probs=58.3
Q ss_pred CceEEEecccccHHHHHhhc----CCCeEEEEeecCCc-chHHH----HHhc--Cc--eeeeccccccCCCCCCCcc--e
Q 017983 221 VRNVMDMNASYGGFAAALID----QPLWVMNVVPIDAP-DTLSI----IFDR--GL--IGMYHDWCESFNTYPRTYD--L 285 (363)
Q Consensus 221 ~r~VLDvGCG~G~faa~L~~----~~v~v~~v~~~d~s-~~L~~----a~~R--gl--~~~~~d~~e~~lpfp~sFD--l 285 (363)
..+..|+|.|+-.=++.|.+ ++ .....+|+|.+ ..|.. +... ++ .+...|.|.+.--.|+-=- +
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~-~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRG-SLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcC-CcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 46899999999876666654 33 34568899988 44432 2111 22 3445566543111222111 2
Q ss_pred eeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983 286 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 321 (363)
Q Consensus 286 Vh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 321 (363)
++-...+-.+. ++.-..+|..+.-.|+||-++.+.
T Consensus 158 ~flGStlGN~t-p~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNLT-PGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCCC-hHHHHHHHHHHHhcCCCcceEEEe
Confidence 22233333332 233467899999999999999997
No 499
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=38.20 E-value=1.8e+02 Score=26.10 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCCceeeecccCCC----CCCCCCccEEEeCCccccccc------CC---------CchhhhhcccccCCe
Q 017983 11 AQIQFALERGIPAILSVIGTQKL----TFPDDAYDLIHCARCRVHWDA------QG---------GKPLLELNRILRPGG 71 (363)
Q Consensus 11 ~qvq~A~erg~p~~~~~~~~~~L----Pfpd~sFD~v~cs~~~~~~~~------~~---------~~~l~E~~RVLrPGG 71 (363)
.-++.-.++|+.+.. .+|+.+| ....+.||.|+=.. |+.. +. ..++.-+.++|+++|
T Consensus 44 ~nl~~L~~~g~~V~~-~VDat~l~~~~~~~~~~FDrIiFNF---PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G 119 (166)
T PF10354_consen 44 ENLEELRELGVTVLH-GVDATKLHKHFRLKNQRFDRIIFNF---PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDG 119 (166)
T ss_pred HHHHHHhhcCCcccc-CCCCCcccccccccCCcCCEEEEeC---CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344444566876554 4566665 33689999998541 2221 00 137788899999999
Q ss_pred EEEEEeCCC--CCCChhhHHHHHHHHHHHhhcceEEEEE
Q 017983 72 FFIWSATPV--YRHDDRHRSVWNAMVNLTESMCWKAVAR 108 (363)
Q Consensus 72 ~~~~s~~~~--~~~~~e~~~~~~~~~~l~~~~cw~~~~~ 108 (363)
.+.++--.. |..| .++.+|+.-...+..+
T Consensus 120 ~IhVTl~~~~py~~W--------~i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 120 EIHVTLKDGQPYDSW--------NIEELAAEAGLVLVRK 150 (166)
T ss_pred EEEEEeCCCCCCccc--------cHHHHHHhcCCEEEEE
Confidence 999994422 3222 3567888876666554
No 500
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=38.03 E-value=77 Score=33.12 Aligned_cols=68 Identities=19% Similarity=0.368 Sum_probs=42.8
Q ss_pred HHHHHHcCCCcee-eecccCCCC---CCCCCccEEE----eCCcccccccC-----------------CCchhhhhcccc
Q 017983 13 IQFALERGIPAIL-SVIGTQKLT---FPDDAYDLIH----CARCRVHWDAQ-----------------GGKPLLELNRIL 67 (363)
Q Consensus 13 vq~A~erg~p~~~-~~~~~~~LP---fpd~sFD~v~----cs~~~~~~~~~-----------------~~~~l~E~~RVL 67 (363)
.+.+.+-|+...+ ...+...+| |+- +||-|. ||-.-+-+-+. ..+.|..+.-.+
T Consensus 283 ~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv 361 (460)
T KOG1122|consen 283 KANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLV 361 (460)
T ss_pred HHHHHHhCCCceEEEccCcccccccccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhc
Confidence 3445556877544 445565555 775 999997 55422222110 124677777899
Q ss_pred cCCeEEEEEeCCCC
Q 017983 68 RPGGFFIWSATPVY 81 (363)
Q Consensus 68 rPGG~~~~s~~~~~ 81 (363)
||||++|+|+=.|.
T Consensus 362 ~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 362 KAGGVLVYSTCSIT 375 (460)
T ss_pred cCCcEEEEEeeecc
Confidence 99999999966554
Done!